Psyllid ID: psy7616

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL
Secondary Structure (PSIPRED)
ccEEEEEccEEEEcccccEEEEEccccEEEEEEEEcccccEEEEEEcccccccccEEEEccEEEEccccccccEEEEEEEEccccccEEEEEEEEEEEEEcccccEEEEccEEEEEEEcccccEEEEEEEEccccccEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccEEcccccccccccccEEEEccccEEEEcEEEEEcccEEEEEEcccccccccccEcccEEEEEEEEHHHcccEEEEEEccccccccEEEEEEEEEccccEEEccccccEEEEEEEEccccEEEEEEEcccccccEEEEEEEEEc
Coil and Loop (DISEMBL)
meqlqmvppsirtspsngqltvrkggtitleckasgnpvpsiiwskkdsslpsgeksleGFSITLEKVdrhqagvyqctatngvgdpvTVDMTLEVLCKILpsgeksleGFSITLEKVdrhqagvyqctatngvgdpvtVDMTLEVL
Flexible Loop (DISEMBL)
meqlqmvppsirtspsngqlTVRKGGTITLeckasgnpvpsiiwskkdsslpsGEKSLEGFSITLEKVDRHQAGVYQCTatngvgdpvTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGvyqctatngvgdpvTVDMTLEVL
Low Complexity Region (SEG)
MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL
Disordered region (IsUnstruct)
**************************TITLECK*******SIIW***************GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD******
Disordered Region (DISOPRED)
*EQLQMVPPSIRTS*******VRKGGTITLECKASGNPVPSIIWSKKDSSL****KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL
Disordered Region (DISEMBL)
******************QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL
Disordered Region (DISPRO)
**QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q96RW7	5635	Hemicentin-1 OS=Homo sapi	yes	N/A	0.863	0.022	0.304	1e-09
Q3UQ28	1475	Peroxidasin homolog OS=Mu	yes	N/A	0.768	0.076	0.317	4e-09
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.632	0.266	0.308	8e-09
Q0WYX8	949	MAM domain-containing gly	no	N/A	0.503	0.077	0.371	1e-08
P16621	2029	Tyrosine-protein phosphat	no	N/A	0.666	0.048	0.347	2e-08
P98160	4391	Basement membrane-specifi	no	N/A	0.537	0.017	0.387	2e-08
Q92626	1479	Peroxidasin homolog OS=Ho	no	N/A	0.768	0.076	0.301	2e-08
Q05793	3707	Basement membrane-specifi	no	N/A	0.448	0.017	0.417	2e-08
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.891	0.025	0.335	3e-08
O42414	1369	Neurofascin OS=Gallus gal	no	N/A	0.564	0.060	0.370	3e-08

>sp|Q96RW7|HMCN1_HUMAN Hemicentin-1 OS=Homo sapiens GN=HMCN1 PE=1 SV=2

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/171 (30%), Positives = 73/171 (42%), Gaps = 44/171 (25%)

Query: 7    VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS--GEKSLEGF-SI 63
            VPP IR++   G  TV +     L C A G P P+I W K +  L +  G+ + E +  +
Sbjct: 4167 VPPRIRST--EGHYTVNENSQAILPCVADGIPTPAINWKKDNVLLANLLGKYTAEPYGEL 4224

Query: 64   TLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL---------------------CK-- 99
             LE V    +G Y C A N  G D  TV +T+ VL                     CK  
Sbjct: 4225 ILENVVLEDSGFYTCVANNAAGEDTHTVSLTVHVLPTFTELPGDVSLNKGEQLRLSCKAT 4284

Query: 100  --------------ILPSGEKSLEGFS-ITLEKVDRHQAGVYQCTATNGVG 135
                          I+P+   S+ G S + +E+V +  +G Y CTA N VG
Sbjct: 4285 GIPLPKLTWTFNNNIIPAHFDSVNGHSELVIERVSKEDSGTYVCTAENSVG 4335

Homo sapiens (taxid: 9606)

>sp|Q3UQ28|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2

 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 40/126 (31%), Positives = 59/126 (46%), Gaps = 13/126 (10%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---- 57
           E+L    P I + P +  +T   G T+   C+A GNP P IIW + ++ L     S    
Sbjct: 236 EELNCERPRITSEPQDADVT--SGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNL 293

Query: 58  LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK-------ILPSGEKSLEG 110
           L+  ++ ++       GVYQC A N  G+  T ++TL  L         I P   + L G
Sbjct: 294 LDDGTLMIQNTQEADEGVYQCMAKNVAGEAKTQEVTLRYLGSPARPTFVIQPQNTEVLVG 353

Query: 111 FSITLE 116
            S+TLE
Sbjct: 354 ESVTLE 359

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system (By similarity). Plays a role in extracellular matrix formation.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 49/94 (52%), Gaps = 1/94 (1%)

Query: 4   LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS-LPSGEKSLEGFS 62
           LQ+  P + +  S   L V +G  + LEC A G P P + W +++++ LP+G     G  
Sbjct: 126 LQVRRPPVISDNSTRSLVVSEGQAVRLECYAGGYPAPRVSWRRENNAILPTGGSIYRGNV 185

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           + + ++ +   G Y C A NGVG     ++ +EV
Sbjct: 186 LKISRIGKEDRGTYYCVAENGVGKGARRNIAVEV 219

May play a role in early neuronal differentiation and axon outgrowth.

Schistocerca americana (taxid: 7009)

>sp|Q0WYX8|MDGA1_CHICK MAM domain-containing glycosylphosphatidylinositol anchor protein 1 OS=Gallus gallus GN=MDGA1 PE=1 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 4/78 (5%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--KDSSLPSGEKSLEGF- 61
           + VPP+I        +TVR+G    L+C+  G P P IIWS+  K++ +PSG  ++E + 
Sbjct: 436 ETVPPTISVPKGQSTITVREGSRAELQCEVRGKPKPPIIWSRVDKETPMPSGTMTVETYD 495

Query: 62  -SITLEKVDRHQAGVYQC 78
             + LE V R  +G Y+C
Sbjct: 496 GKLRLESVSRDMSGTYKC 513

Required for radial migration of cortical neurons in the superficial layer of the neocortex.

Gallus gallus (taxid: 9031)

>sp|P16621|LAR_DROME Tyrosine-protein phosphatase Lar OS=Drosophila melanogaster GN=Lar PE=1 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 57/115 (49%), Gaps = 17/115 (14%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-----S 62
           PP I   P N    VR GG  +  C A G+P PSI+W K    + SG +S          
Sbjct: 35  PPEIIRKPQNQ--GVRVGGVASFYCAARGDPPPSIVWRKNGKKV-SGTQSRYTVLEQPGG 91

Query: 63  ITLEKVDRHQAGV----YQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSI 113
           I++ +++  +AG     Y+C A NGVGD V+ D TL +       G+K+  GF +
Sbjct: 92  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY-----EGDKTPAGFPV 141

Possible cell adhesion receptor. It possesses an intrinsic protein tyrosine phosphatase activity (PTPase). It controls motor axon guidance.

Drosophila melanogaster (taxid: 7227)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

EC: 8

>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core protein OS=Homo sapiens GN=HSPG2 PE=1 SV=4

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 45/80 (56%), Gaps = 1/80 (1%)

Query: 6    MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
            M P + +      +LTV  G T TL C A+G+P P+I WSK  S LP  +  LEG ++ +
Sbjct: 3207 MAPGAPQVQAEEAELTVEAGHTATLRCSATGSPAPTIHWSKLRSPLP-WQHRLEGDTLII 3265

Query: 66   EKVDRHQAGVYQCTATNGVG 85
             +V +  +G Y C AT+  G
Sbjct: 3266 PRVAQQDSGQYICNATSPAG 3285

The LG3 peptide has anti-angiogenic properties that require binding of calcium ions for full activity.

Homo sapiens (taxid: 9606)

>sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 58/126 (46%), Gaps = 13/126 (10%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---- 57
           E+L    P I + P +  +T   G T+   C+A GNP P IIW + ++ L     S    
Sbjct: 239 EELNCERPRITSEPQDADVT--SGNTVYFTCRAEGNPKPEIIWLRNNNELSMKTDSRLNL 296

Query: 58  LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK-------ILPSGEKSLEG 110
           L+  ++ ++       G+YQC A N  G+  T ++TL            I P   + L G
Sbjct: 297 LDDGTLMIQNTQETDQGIYQCMAKNVAGEVKTQEVTLRYFGSPARPTFVIQPQNTEVLVG 356

Query: 111 FSITLE 116
            S+TLE
Sbjct: 357 ESVTLE 362

Displays low peroxidase activity and is likely to participate in H(2)O(2) metabolism and peroxidative reactions in the cardiovascular system. Plays a role in extracellular matrix formation.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 7

>sp|Q05793|PGBM_MOUSE Basement membrane-specific heparan sulfate proteoglycan core protein OS=Mus musculus GN=Hspg2 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 19   QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQC 78
            +LT+  G T TL C A+GNP P+I WSK  + LP  +  +EG ++ + +V +  +G Y C
Sbjct: 2541 ELTLEAGHTATLHCSATGNPPPTIHWSKLRAPLP-WQHRIEGNTLVIPRVAQQDSGQYIC 2599

Query: 79   TATNGVG 85
             ATN  G
Sbjct: 2600 NATNSAG 2606

The LG3 peptide has anti-angiogenic properties that require binding of calcium ions for full activity.

Mus musculus (taxid: 10090)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 48/143 (33%), Positives = 70/143 (48%), Gaps = 12/143 (8%)

Query: 1    MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL----PSGEK 56
            +E +  VPP  R  P+       +G   +L C ASG P P+I W+K+ ++L    P    
Sbjct: 968  VELVVQVPP--RIHPTATHHITNEGVPASLPCVASGVPAPTITWTKETNALTSRGPHYNV 1025

Query: 57   SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV----LCKILPSGEKSLEGFS 112
            S EG ++ + +     AG Y CTATN VG   + +M L V    L K +      L   S
Sbjct: 1026 SKEG-TLLIAQPSAQDAGAYVCTATNTVGF-SSQEMRLSVNRLALSKYVWEEYGLLPSGS 1083

Query: 113  ITLEKVDRHQAGVYQCTATNGVG 135
            + L +V    +G Y+CTA+N  G
Sbjct: 1084 LRLAQVQVGDSGHYECTASNPAG 1106

Homo sapiens (taxid: 9606)

>sp|O42414|NFASC_CHICK Neurofascin OS=Gallus gallus GN=NFASC PE=1 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 49/89 (55%), Gaps = 6/89 (6%)

Query: 16  SNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF--SITLEKVDRHQA 73
           S+ Q+ +R G  + LEC ASG P P I+W KK   LP+G+  LE F  ++ +  V    +
Sbjct: 271 SSSQMVLR-GVDLLLECIASGVPAPDIMWYKKGGELPAGKTKLENFNKALRISNVSEEDS 329

Query: 74  GVYQCTATNGVGDPVTVDMTLEVLCKILP 102
           G Y C A+N +G   ++  T+ V  K  P
Sbjct: 330 GEYFCLASNKMG---SIRHTISVRVKAAP 355

Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance, synaptogenesis, myelination and neuron-glial cell interactions.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
242005474	369	lachesin precursor, putative [Pediculus	0.625	0.249	0.760	9e-37
347967624	423	AGAP002325-PA [Anopheles gambiae str. PE	0.755	0.262	0.582	1e-27
1688299	528	Klingon [Drosophila melanogaster]	0.748	0.208	0.578	1e-27
194743974	468	GF16716 [Drosophila ananassae] gi|190627	0.748	0.235	0.578	1e-27
195502743	556	GE10339 [Drosophila yakuba] gi|194184461	0.748	0.197	0.578	1e-27
24649162	545	klingon [Drosophila melanogaster] gi|730	0.748	0.201	0.578	1e-27
194910680	517	GG11171 [Drosophila erecta] gi|190656845	0.748	0.212	0.578	2e-27
195573024	481	GD20989 [Drosophila simulans] gi|1942004	0.748	0.228	0.578	2e-27
157112896	123	hypothetical protein AaeL_AAEL000156 [Ae	0.741	0.886	0.601	2e-27
195331175	521	GM26472 [Drosophila sechellia] gi|194121	0.748	0.211	0.578	2e-27

>gi|242005474|ref|XP_002423590.1| lachesin precursor, putative [Pediculus humanus corporis] gi|212506738|gb|EEB10852.1| lachesin precursor, putative [Pediculus humanus corporis]

 Score =  157 bits (398), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 85/92 (92%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           +VPPSI+T P++GQLT RKGGTIT+ECKASGNPVPSI W++K++ LP+GEK +EGFSITL
Sbjct: 48  LVPPSIKTQPASGQLTARKGGTITMECKASGNPVPSIQWTRKNNVLPTGEKMVEGFSITL 107

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
           E +DRHQ+GVYQCTA+NGVGDPVTVDM L+VL
Sbjct: 108 EMIDRHQSGVYQCTASNGVGDPVTVDMQLDVL 139

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|347967624|ref|XP_312645.4| AGAP002325-PA [Anopheles gambiae str. PEST] gi|333468374|gb|EAA07686.4| AGAP002325-PA [Anopheles gambiae str. PEST]

 Score =  128 bits (321), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 67/115 (58%), Positives = 80/115 (69%), Gaps = 4/115 (3%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           +VPPS+R  P  GQ+T RKGG +TLECKASGNPVPSI W+K+  +  S  K  EG  ++L
Sbjct: 66  LVPPSVRAIPPTGQVTARKGGAVTLECKASGNPVPSIYWTKRTGTGKSAAKIGEGPVLSL 125

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSL----EGFSITLE 116
           E+V+R QAGVYQCTA N VG+PVTVDM L+VL     S EKS     EGF   LE
Sbjct: 126 ERVERQQAGVYQCTADNSVGEPVTVDMRLDVLYPPDISVEKSWIHSGEGFEAQLE 180

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|1688299|gb|AAB36950.1| Klingon [Drosophila melanogaster]

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           +VPPS+R  P++GQL  RKGG ITLECK SGNPVPSI W+KK  +  S  +  +G  +TL
Sbjct: 191 LVPPSVRAIPTSGQLQARKGGPITLECKGSGNPVPSIYWTKKSGANKSTARIGDGPILTL 250

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----CKILPSGEKSLEGFSITL 115
           EK++R QAGVYQCTA NGVGDPVTVDM L+VL     ++  S   S EGF   L
Sbjct: 251 EKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKL 304

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194743974|ref|XP_001954473.1| GF16716 [Drosophila ananassae] gi|190627510|gb|EDV43034.1| GF16716 [Drosophila ananassae]

 Score =  127 bits (320), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           +VPPS+R  P++GQL  RKGG ITLECK SGNPVPSI W+KK  +  S  +  +G  +TL
Sbjct: 113 LVPPSVRAIPTSGQLQARKGGPITLECKGSGNPVPSIYWTKKSGANKSTARIGDGPILTL 172

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----CKILPSGEKSLEGFSITL 115
           EK++R QAGVYQCTA NGVGDPVTVDM L+VL     ++  S   S EGF   L
Sbjct: 173 EKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKL 226

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195502743|ref|XP_002098360.1| GE10339 [Drosophila yakuba] gi|194184461|gb|EDW98072.1| GE10339 [Drosophila yakuba]

 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           +VPPS+R  P++GQL  RKGG ITLECK SGNPVPSI W+KK  +  S  +  +G  +TL
Sbjct: 176 LVPPSVRAIPTSGQLQARKGGPITLECKGSGNPVPSIYWTKKSGANKSSARIGDGPILTL 235

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----CKILPSGEKSLEGFSITL 115
           EK++R QAGVYQCTA NGVGDPVTVDM L+VL     ++  S   S EGF   L
Sbjct: 236 EKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKL 289

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24649162|ref|NP_524454.2| klingon [Drosophila melanogaster] gi|7300932|gb|AAF56071.1| klingon [Drosophila melanogaster] gi|16648274|gb|AAL25402.1| LD10776p [Drosophila melanogaster]

 Score =  127 bits (319), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 66/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           +VPPS+R  P++GQL  RKGG ITLECK SGNPVPSI W+KK  +  S  +  +G  +TL
Sbjct: 194 LVPPSVRAIPTSGQLQARKGGPITLECKGSGNPVPSIYWTKKSGANKSTARIGDGPILTL 253

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----CKILPSGEKSLEGFSITL 115
           EK++R QAGVYQCTA NGVGDPVTVDM L+VL     ++  S   S EGF   L
Sbjct: 254 EKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKL 307

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194910680|ref|XP_001982207.1| GG11171 [Drosophila erecta] gi|190656845|gb|EDV54077.1| GG11171 [Drosophila erecta]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           +VPPS+R  P++GQL  RKGG ITLECK SGNPVPSI W+KK  +  S  +  +G  +TL
Sbjct: 166 LVPPSVRAIPTSGQLQARKGGPITLECKGSGNPVPSIYWTKKSGANKSTARIGDGPILTL 225

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----CKILPSGEKSLEGFSITL 115
           EK++R QAGVYQCTA NGVGDPVTVDM L+VL     ++  S   S EGF   L
Sbjct: 226 EKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKL 279

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195573024|ref|XP_002104495.1| GD20989 [Drosophila simulans] gi|194200422|gb|EDX13998.1| GD20989 [Drosophila simulans]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           +VPPS+R  P++GQL  RKGG ITLECK SGNPVPSI W+KK  +  S  +  +G  +TL
Sbjct: 130 LVPPSVRAIPTSGQLQARKGGPITLECKGSGNPVPSIYWTKKSGANKSTARIGDGPILTL 189

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----CKILPSGEKSLEGFSITL 115
           EK++R QAGVYQCTA NGVGDPVTVDM L+VL     ++  S   S EGF   L
Sbjct: 190 EKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKL 243

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157112896|ref|XP_001657666.1| hypothetical protein AaeL_AAEL000156 [Aedes aegypti] gi|108884632|gb|EAT48857.1| AAEL000156-PA, partial [Aedes aegypti]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 68/113 (60%), Positives = 78/113 (69%), Gaps = 4/113 (3%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
           PPS+R  P +GQLT RKGG +TLECKASGNPVPSI W+K+ S      K  EG  +TLE+
Sbjct: 1   PPSVRVIPPSGQLTARKGGVVTLECKASGNPVPSIYWTKRGSPAKVATKIGEGPILTLER 60

Query: 68  VDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSL----EGFSITLE 116
           V+R QAGVYQCTA N VGDPVTVDM L+VL     S +KS     EGF   LE
Sbjct: 61  VERQQAGVYQCTADNNVGDPVTVDMRLDVLYPPDISVDKSWIHSGEGFEAQLE 113

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195331175|ref|XP_002032278.1| GM26472 [Drosophila sechellia] gi|194121221|gb|EDW43264.1| GM26472 [Drosophila sechellia]

 Score =  127 bits (318), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 66/114 (57%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           +VPPS+R  P++GQL  RKGG ITLECK SGNPVPSI W+KK  +  S  +  +G  +TL
Sbjct: 170 LVPPSVRAIPTSGQLQARKGGPITLECKGSGNPVPSIYWTKKSGANKSTARIGDGPILTL 229

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----CKILPSGEKSLEGFSITL 115
           EK++R QAGVYQCTA NGVGDPVTVDM L+VL     ++  S   S EGF   L
Sbjct: 230 EKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKL 283

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
FB|FBgn0017590	545	klg "klingon" [Drosophila mela	0.748	0.201	0.578	2.8e-30
FB|FBgn0037107	467	CG7166 [Drosophila melanogaste	0.734	0.231	0.521	1.1e-25
ZFIN|ZDB-GENE-030616-360	957	mamdc1 "MAM domain containing	0.517	0.079	0.371	1.9e-13
UNIPROTKB|F1RVR8	935	MDGA1 "Uncharacterized protein	0.591	0.093	0.344	2.5e-12
UNIPROTKB|F1MHX8	955	MDGA1 "Uncharacterized protein	0.591	0.091	0.344	5.3e-12
UNIPROTKB|Q8NFP4	955	MDGA1 "MAM domain-containing g	0.591	0.091	0.344	1.6e-12
UNIPROTKB|J3KNB7	959	MDGA1 "MAM domain-containing g	0.591	0.090	0.344	1.6e-12
ZFIN|ZDB-GENE-050726-3	381	sid4 "secreted immunoglobulin	0.510	0.196	0.349	3.9e-13
UNIPROTKB|F1PGE1	954	MDGA1 "Uncharacterized protein	0.591	0.091	0.344	1.4e-11
FB|FBgn0259245	555	CG42343 [Drosophila melanogast	0.619	0.163	0.35	6.8e-13

FB|FBgn0017590 klg "klingon" [Drosophila melanogaster (taxid:7227)]

 Score = 315 (115.9 bits), Expect = 2.8e-30, Sum P(2) = 2.8e-30
 Identities = 66/114 (57%), Positives = 80/114 (70%)

Query:     6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
             +VPPS+R  P++GQL  RKGG ITLECK SGNPVPSI W+KK  +  S  +  +G  +TL
Sbjct:   194 LVPPSVRAIPTSGQLQARKGGPITLECKGSGNPVPSIYWTKKSGANKSTARIGDGPILTL 253

Query:    66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----CKILPSGEKSLEGFSITL 115
             EK++R QAGVYQCTA NGVGDPVTVDM L+VL     ++  S   S EGF   L
Sbjct:   254 EKLERQQAGVYQCTADNGVGDPVTVDMRLDVLYPPDIQVEKSWIHSGEGFEAKL 307

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0007465 "R7 cell fate commitment" evidence=IGI

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IMP

FB|FBgn0037107 CG7166 [Drosophila melanogaster (taxid:7227)]

 Score = 276 (102.2 bits), Expect = 1.1e-25, Sum P(2) = 1.1e-25
 Identities = 60/115 (52%), Positives = 76/115 (66%)

Query:     6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS-IT 64
             +VPP++R  P NGQ+T RKG T+TLECKASGNPVP+I W KKD  + SG   L   S + 
Sbjct:   132 LVPPTLRALPHNGQVTARKGSTVTLECKASGNPVPTIFWFKKD--VFSGPTHLSDSSTLI 189

Query:    65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSL----EGFSITL 115
             LE VDRH AG YQC+A NGV D V++D+ L +L     + EKS     EG+ + L
Sbjct:   190 LENVDRHHAGTYQCSADNGVKDRVSMDIQLTILSPPEITVEKSWVHASEGYDVEL 244

GO:0005576 "extracellular region" evidence=ISS

ZFIN|ZDB-GENE-030616-360 mamdc1 "MAM domain containing 1" [Danio rerio (taxid:7955)]

 Score = 138 (53.6 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 29/78 (37%), Positives = 42/78 (53%)

Query:    21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE--KVDRHQAGVYQC 78
             T+R+G T+ L C  SG+P P I W+K   S     +    F+ TL   ++ RHQ G Y C
Sbjct:    51 TIREGETLELTCLVSGHPRPQIRWTKTAGSATDRFQDSSVFNETLRITRIQRHQGGRYYC 110

Query:    79 TATNGVGDPVTVDMTLEV 96
              A NG+G P    + ++V
Sbjct:   111 KAENGLGTPAIKSIRVDV 128

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1RVR8 MDGA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 144 (55.7 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query:     8 PPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
             PP+++ S  N  L V  G  +T++C  +G +P+P + WS     LP G  + +G ++++ 
Sbjct:   217 PPALKLSV-NETLVVNPGENVTVQCLLTGGDPLPQLQWSHGPGPLPLGALA-QGGTLSIP 274

Query:    67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
              V    +G Y CTATN VG+P    + L V
Sbjct:   275 SVQARDSGYYNCTATNNVGNPAKKTVNLLV 304

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|F1MHX8 MDGA1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 144 (55.7 bits), Expect = 5.3e-12, Sum P(2) = 5.3e-12
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query:     8 PPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
             PP+++ S  N  L V  G  +T++C  +G +P+P + WS     LP G  + +G ++++ 
Sbjct:   239 PPALKLSV-NETLVVNPGENVTVQCLLTGGDPLPQLQWSHGPGPLPLGALA-QGGTLSIP 296

Query:    67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
              V    +G Y CTATN VG+P    + L V
Sbjct:   297 SVQARDSGYYNCTATNNVGNPAKKTVNLLV 326

GO:0016020 "membrane" evidence=IEA

UNIPROTKB|Q8NFP4 MDGA1 "MAM domain-containing glycosylphosphatidylinositol anchor protein 1" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query:     8 PPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
             PP+++ S  N  L V  G  +T++C  +G +P+P + WS     LP G  + +G ++++ 
Sbjct:   239 PPALKLSV-NETLVVNPGENVTVQCLLTGGDPLPQLQWSHGPGPLPLGALA-QGGTLSIP 296

Query:    67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
              V    +G Y CTATN VG+P    + L V
Sbjct:   297 SVQARDSGYYNCTATNNVGNPAKKTVNLLV 326

GO:0001764 "neuron migration" evidence=ISS

GO:0046658 "anchored to plasma membrane" evidence=ISS;IDA

GO:0003674 "molecular_function" evidence=ND

GO:0007420 "brain development" evidence=ISS

GO:0021527 "spinal cord association neuron differentiation" evidence=ISS

UNIPROTKB|J3KNB7 MDGA1 "MAM domain-containing glycosylphosphatidylinositol anchor protein 1" [Homo sapiens (taxid:9606)]

 Score = 144 (55.7 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
 Identities = 31/90 (34%), Positives = 50/90 (55%)

Query:     8 PPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
             PP+++ S  N  L V  G  +T++C  +G +P+P + WS     LP G  + +G ++++ 
Sbjct:   239 PPALKLSV-NETLVVNPGENVTVQCLLTGGDPLPQLQWSHGPGPLPLGALA-QGGTLSIP 296

Query:    67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
              V    +G Y CTATN VG+P    + L V
Sbjct:   297 SVQARDSGYYNCTATNNVGNPAKKTVNLLV 326

GO:0016020 "membrane" evidence=IEA

ZFIN|ZDB-GENE-050726-3 sid4 "secreted immunoglobulin domain 4" [Danio rerio (taxid:7955)]

 Score = 133 (51.9 bits), Expect = 3.9e-13, Sum P(2) = 3.9e-13
 Identities = 29/83 (34%), Positives = 44/83 (53%)

Query:     8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS-----LPSGEKSLEGFS 62
             PP +R SP+ G LT+R G  +TL+C  SG P PS+ W ++ +      + +   S     
Sbjct:   112 PPKVRVSPA-GPLTLRVGEIVTLDCSVSGKPRPSVSWIRRQAGGETELVSTTTDSTTSLQ 170

Query:    63 ITLEKVDRHQAGVYQCTATNGVG 85
             +T+   +   AG+Y C A NG G
Sbjct:   171 VTMATAEN--AGMYVCRAQNGEG 191

GO:0009653 "anatomical structure morphogenesis" evidence=IMP

GO:0050840 "extracellular matrix binding" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IDA

UNIPROTKB|F1PGE1 MDGA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 143 (55.4 bits), Expect = 1.4e-11, Sum P(2) = 1.4e-11
 Identities = 31/90 (34%), Positives = 49/90 (54%)

Query:     8 PPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
             PP+++ S  N  L V  G  +T++C  +G +P+P + WS     LP G  +  G ++++ 
Sbjct:   239 PPALKLSV-NETLVVNPGENVTVQCLLTGGDPLPQLQWSHGPGPLPLGALAQSG-TLSIP 296

Query:    67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
              V    +G Y CTATN VG+P    + L V
Sbjct:   297 SVQARDSGYYNCTATNNVGNPAKKTVNLLV 326

GO:0016020 "membrane" evidence=IEA

FB|FBgn0259245 CG42343 [Drosophila melanogaster (taxid:7227)]

 Score = 160 (61.4 bits), Expect = 6.8e-13, Sum P(2) = 6.8e-13
 Identities = 35/100 (35%), Positives = 55/100 (55%)

Query:     6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD---------SSLPSGEK 56
             ++PP I    ++G + V +GG+  L C+A G+P P I W ++D         S   +  +
Sbjct:   208 VIPPDIINEETSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREIIARNGSHQKTKAQ 267

Query:    57 SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
             S+EG  +TL K+ R + G Y C A+NGV   V+  M L+V
Sbjct:   268 SVEGEMLTLSKITRSEMGAYMCIASNGVPPTVSKRMKLQV 307

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	147
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-17
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	8e-15
smart00410	85	smart00410, IG_like, Immunoglobulin like	2e-13
smart00409	85	smart00409, IG, Immunoglobulin	2e-13
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	1e-12
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	4e-12
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	8e-12
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-11
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	1e-11
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	5e-11
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	3e-10
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-10
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	1e-09
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	3e-09
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	6e-09
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	5e-08
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	8e-08
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	1e-07
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	1e-07
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-07
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	2e-07
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	6e-07
cd05868	76	cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-lik	1e-06
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	3e-06
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	4e-06
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	9e-06
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-05
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	1e-05
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	2e-05
cd05740	91	cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-	2e-05
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	4e-05
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	6e-05
pfam00047	62	pfam00047, ig, Immunoglobulin domain	6e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	6e-05
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	8e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	1e-04
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	1e-04
cd05875	77	cd05875, Ig6_hNeurofascin_like, Sixth immunoglobul	2e-04
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	3e-04
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	3e-04
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	4e-04
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	4e-04
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	5e-04
cd05734	79	cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-li	8e-04
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	9e-04
cd05850	94	cd05850, Ig1_Contactin-2, First Ig domain of conta	0.001
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	0.002
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.004
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.004
cd05874	77	cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like	0.004
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	0.004

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 71.9 bits (177), Expect = 2e-17
 Identities = 25/93 (26%), Positives = 41/93 (44%), Gaps = 8/93 (8%)

Query: 9  PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGF--SI 63
          P     P +  + V++G +    C  +G+P P++ W K    L S ++   + EG   ++
Sbjct: 1  PKFTQKPKD--VEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTL 58

Query: 64 TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          T+  V     G Y C ATN  G+       L V
Sbjct: 59 TISNVQPDDEGKYTCVATNSAGE-AEASAELTV 90

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 64.4 bits (157), Expect = 8e-15
 Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSI-TLEKVDRHQAGVYQCTATNG 83
          G ++TL C A GNPVP+I W K    LP   + +   S  T++ V    +G+Y C A N 
Sbjct: 2  GQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAENS 61

Query: 84 VG 85
           G
Sbjct: 62 AG 63

Length = 63

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 61.4 bits (149), Expect = 2e-13
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP------SGEKSLEGFSITLEKVDRH 71
            +TV++G ++TL C+ASG+P P + W K+   L       S  +S    ++T+  V   
Sbjct: 2  PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 72 QAGVYQCTATNGVGDPVTVDMTLEV 96
           +G Y C ATN  G   +   TL V
Sbjct: 62 DSGTYTCAATNSSGS-ASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 61.4 bits (149), Expect = 2e-13
 Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 7/85 (8%)

Query: 18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP------SGEKSLEGFSITLEKVDRH 71
            +TV++G ++TL C+ASG+P P + W K+   L       S  +S    ++T+  V   
Sbjct: 2  PSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPE 61

Query: 72 QAGVYQCTATNGVGDPVTVDMTLEV 96
           +G Y C ATN  G   +   TL V
Sbjct: 62 DSGTYTCAATNSSGS-ASSGTTLTV 85

Length = 85

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 59.4 bits (144), Expect = 1e-12
 Identities = 28/89 (31%), Positives = 38/89 (42%), Gaps = 9/89 (10%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
           P +  SP+     V +G  +TL C A GNP P+  W K    L S +            
Sbjct: 1  KPVLTPSPTV----VFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQN-----GFFTPN 51

Query: 68 VDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          V    +G Y C A+NG G   +  +TL V
Sbjct: 52 VSAEDSGTYTCVASNGGGGKTSNPVTLTV 80

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 58.3 bits (141), Expect = 4e-12
 Identities = 40/103 (38%), Positives = 49/103 (47%), Gaps = 18/103 (17%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--------KDSS------LPS 53
          PP I   PS+  L V KG   TL CKA G P P+I W K        KD        LPS
Sbjct: 1  PPRIVEHPSD--LIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPS 58

Query: 54 GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          G  SL    +   +  R   GVY C A N +G+ V+ + +LEV
Sbjct: 59 G--SLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAVSRNASLEV 99

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 57.1 bits (138), Expect = 8e-12
 Identities = 28/63 (44%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 24 KGGTITLECKASGNPVPSIIWSKKDSSLPS-GEKSLEGFSITLEKVDRHQAGVYQCTATN 82
          KG  +TLEC A GNPVP I W K D S+PS  E S+ G  + +  +     G Y+C A N
Sbjct: 15 KGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAEN 74

Query: 83 GVG 85
            G
Sbjct: 75 IKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 56.2 bits (136), Expect = 1e-11
 Identities = 24/60 (40%), Positives = 31/60 (51%), Gaps = 2/60 (3%)

Query: 28 ITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL--EKVDRHQAGVYQCTATNGVG 85
          + LEC A G P P I W K    LP+     E F+ TL  + V     G Y+CTA+N +G
Sbjct: 1  LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLG 60

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 56.8 bits (137), Expect = 1e-11
 Identities = 27/75 (36%), Positives = 39/75 (52%), Gaps = 10/75 (13%)

Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF----------SITLEKVDR 70
          T  +   ITL C+A G+P+P I W +   +   G+KSL+G           S+TL+ V  
Sbjct: 12 TAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQL 71

Query: 71 HQAGVYQCTATNGVG 85
            AG Y C A+N +G
Sbjct: 72 TDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 55.4 bits (133), Expect = 5e-11
 Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 11/79 (13%)

Query: 28 ITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF----------SITLEKVDRHQAGVYQ 77
          ITL C+ASG+P+PSI W     ++ S EK+L+G           S+TL+ +    AG Y 
Sbjct: 20 ITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL 79

Query: 78 CTATNGVGDPVTVDMTLEV 96
          CTA+N +G      M LEV
Sbjct: 80 CTASNTIGQDSQS-MYLEV 97

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 52.8 bits (127), Expect = 3e-10
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 25 GGTITLECKASGNPVPSIIWSKKDSSL----PSGEKSLEGFSITLEKVDRHQAGVYQCTA 80
          G T  L+C+A G P P+I W      +    P   + ++G ++ L  V  +   VYQC A
Sbjct: 1  GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNA 60

Query: 81 TNGVG 85
          +N  G
Sbjct: 61 SNVHG 65

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 52.9 bits (126), Expect = 3e-10
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 9/67 (13%)

Query: 28 ITLECKASGNPVPSIIWSKKDSSLP---------SGEKSLEGFSITLEKVDRHQAGVYQC 78
          +TL C ASG P P+I W K    LP         S   S    ++T+  V    +G Y C
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 79 TATNGVG 85
           A+N  G
Sbjct: 61 VASNSAG 67

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 51.3 bits (123), Expect = 1e-09
 Identities = 21/59 (35%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 28 ITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGVG 85
          +  +C+  G+PVP+++W K+D  LP G  + L+  S+ +  V     G Y C A N VG
Sbjct: 1  VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVG 59

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 50.8 bits (121), Expect = 3e-09
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 24 KGGTITLECKASGNPVPSIIWSKKDSSLP-SGEKSLEGFSITLEKVDRHQAGVYQCTATN 82
          KG  +TLEC A GNPVP I W K    +P + E S+ G  + +  +     G Y+C A N
Sbjct: 15 KGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAEN 74

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 49.9 bits (119), Expect = 6e-09
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGFSI 63
          PP+IR   S    T   G ++TL C A G P P++ W+K    + SGE+    + +G  +
Sbjct: 1  PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEM 60

Query: 64 TLEKVDRHQAGVYQCTATNGVGD 86
          T+  VD+     Y C A N  G+
Sbjct: 61 TILDVDKLDEAEYTCIAENKAGE 83

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 47.0 bits (111), Expect = 5e-08
 Identities = 27/77 (35%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSL-EGFSITL 65
           P I  SPS    +V  GG +TL C A G P P +I W +  S           G ++TL
Sbjct: 1  KPVITVSPSP---SVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSGGLGSSGSTLTL 57

Query: 66 EKVDRHQAGVYQCTATN 82
            V    +G Y C A+N
Sbjct: 58 SSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 46.8 bits (111), Expect = 8e-08
 Identities = 22/59 (37%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPS-GEKSLEGFSITLEKVDRHQAGVYQCTATN 82
          G ++  ECKASGNP P+  W K    L S     +E   + + K+    +G+YQC A N
Sbjct: 14 GSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAEN 72

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.1 bits (109), Expect = 1e-07
 Identities = 27/69 (39%), Positives = 34/69 (49%), Gaps = 2/69 (2%)

Query: 24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE--KVDRHQAGVYQCTAT 81
          +G T+   C+A G P P I W+K  S L    + L   S TL   +V  H  G Y+C A 
Sbjct: 1  EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAV 60

Query: 82 NGVGDPVTV 90
          N VG   TV
Sbjct: 61 NIVGSQRTV 69

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 15/70 (21%)

Query: 28 ITLECKASGNPVPSIIWSK--------KDSSLPSGEKSLEG-FSITL---EKVDRHQAGV 75
          I ++C+A GNP P+  W++        KD  +     S  G   I      + + ++ G 
Sbjct: 1  IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDS--GTLVIDNMNGGRAEDYE-GE 57

Query: 76 YQCTATNGVG 85
          YQC A+N +G
Sbjct: 58 YQCYASNELG 67

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 46.0 bits (109), Expect = 2e-07
 Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 3/64 (4%)

Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPS---GEKSLEGFSITLEKVDRHQAGVYQCTAT 81
          G ++ L+C ASGNP P I W K +  L     GE   + ++++L+ +    +G Y C  +
Sbjct: 9  GSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVS 68

Query: 82 NGVG 85
          N  G
Sbjct: 69 NRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 45.6 bits (108), Expect = 2e-07
 Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 2/63 (3%)

Query: 21 TVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCT 79
           VR G  ++  C+A S +P  +++W++    LPS      G  +T+  V    AG Y CT
Sbjct: 12 EVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAMDFNGI-LTIRNVQLSDAGTYVCT 70

Query: 80 ATN 82
           +N
Sbjct: 71 GSN 73

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 44.7 bits (106), Expect = 6e-07
 Identities = 26/79 (32%), Positives = 38/79 (48%), Gaps = 11/79 (13%)

Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG-------FSITLEKVDRHQAGVYQ 77
          G T+ L+C ASGNP P+I W  KD      E  + G       +++ LE V    +G Y 
Sbjct: 9  GSTVRLKCPASGNPRPTITW-LKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYT 67

Query: 78 CTATNGVGDPVTVDMTLEV 96
          C   N  G   +++ T +V
Sbjct: 68 CIVENKYG---SINHTYKV 83

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143276 cd05868, Ig4_NrCAM, Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

 Score = 43.4 bits (102), Expect = 1e-06
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 4/61 (6%)

Query: 29 TLECKASGNPVPSIIWSKKDSSLP----SGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
          TL C+A+GNP PSI W      +        + ++G +I   KV    + VYQC A+N  
Sbjct: 5  TLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEY 64

Query: 85 G 85
          G
Sbjct: 65 G 65

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 76

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 42.2 bits (99), Expect = 3e-06
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 2/60 (3%)

Query: 28 ITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE--KVDRHQAGVYQCTATNGVG 85
          + LEC A G P P + W + D  L          + TL+   V     G Y CTA N  G
Sbjct: 1  LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEG 60

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 6/75 (8%)

Query: 15 PSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSL---PSGEKSLEGFSITLEKVDR 70
          PS+ Q  V  G    LEC    G+P P++ W K    L       + ++  ++ + +  +
Sbjct: 3  PSDTQ--VAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARK 60

Query: 71 HQAGVYQCTATNGVG 85
             G Y+C ATN VG
Sbjct: 61 SDEGTYKCVATNMVG 75

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 41.3 bits (97), Expect = 9e-06
 Identities = 24/82 (29%), Positives = 37/82 (45%), Gaps = 7/82 (8%)

Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF------SITLEKVDRHQAG 74
          T+ +G T+ L C   G+P P + W K D +L   +            S+T++ V    +G
Sbjct: 12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSG 71

Query: 75 VYQCTATNGVGDPVTVDMTLEV 96
           Y     N  G   TVD+T+ V
Sbjct: 72 KYGIVVKNKYGGE-TVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 40.9 bits (96), Expect = 1e-05
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)

Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--LEGFSITLEKVDRHQAGVYQCTATN 82
          GG + +ECK    P P+I WSK    L +  +       S+ +  V +   G Y C A N
Sbjct: 1  GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAEN 60

Query: 83 GVG 85
            G
Sbjct: 61 FFG 63

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 40.7 bits (95), Expect = 1e-05
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 11/76 (14%)

Query: 30 LECKASGNPVPSIIWSKK-DSSLPSGEK-------SLEGFSITLEKVDRHQAGVYQCTAT 81
          LEC A+G+P P I W K   +  P+  +         + F I   K++    GVY CTA 
Sbjct: 3  LECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIE--DTGVYSCTAQ 60

Query: 82 NGVGDPVTVDMTLEVL 97
          N  G  ++ + TL VL
Sbjct: 61 NTAGS-ISANATLTVL 75

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 40.7 bits (95), Expect = 2e-05
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 7/83 (8%)

Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEG---FSITLEKVDRHQA 73
          +T+ +G T+ L C   GNP P +IW K D  +   E     LE     S+T++ V    +
Sbjct: 11 VTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDS 70

Query: 74 GVYQCTATNGVGDPVTVDMTLEV 96
          G Y     N  G   TVD+T+ V
Sbjct: 71 GKYSINVKNKYGGE-TVDVTVSV 92

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143217 cd05740, Ig_CEACAM_D4, Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 26/91 (28%), Positives = 35/91 (38%), Gaps = 3/91 (3%)

Query: 9  PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG--FSITLE 66
          P I ++ S G         +TL C+A G     I W    S L      L     ++T  
Sbjct: 2  PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFN 60

Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
           V R   G YQC A+N V +  +    L V 
Sbjct: 61 NVTRSDTGHYQCEASNEVSNMTSDPYILNVN 91

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D4 Ig-like domain. Length = 91

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)

Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDS--SLPSGEKSLEG----------FSITLEKV 68
          T  + G  TL CKA G P+P I W +     +   G+KS +G           S+ ++ V
Sbjct: 12 TTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDV 71

Query: 69 DRHQAGVYQCTATNGVG 85
              +G Y C A + +G
Sbjct: 72 KLSDSGRYDCEAASRIG 88

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 16/76 (21%)

Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDS------------SLPSGEKSLEGFSITLEK 67
          + VR GG + L C A G P P I W KKD              LP+G  SL   S+   K
Sbjct: 10 VAVR-GGPVVLNCSAEGEPPPKIEW-KKDGVLLNLVSDERRQQLPNG--SLLITSVVHSK 65

Query: 68 VDRHQAGVYQCTATNG 83
           ++   G YQC A N 
Sbjct: 66 HNKPDEGFYQCVAQND 81

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 38.7 bits (90), Expect = 6e-05
 Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)

Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG------FSITLEKVDRHQAGVYQC 78
          G ++TL C  SG P   + W K+   L                ++T+  V    +G Y C
Sbjct: 1  GSSVTLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTC 60

Query: 79 TA 80
            
Sbjct: 61 VV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 38.8 bits (90), Expect = 6e-05
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)

Query: 28 ITLECKASGNPVPSIIWSKK-DSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGVG 85
          I  EC+ +G P P++ W K  D  +PS   K ++  ++ +  + +   G YQC A N VG
Sbjct: 2  IVFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVG 61

Query: 86 D 86
          +
Sbjct: 62 N 62

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 39.0 bits (91), Expect = 8e-05
 Identities = 19/64 (29%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 26 GTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFSITLEKVDRHQAGVYQCTAT 81
          G ++L C+A G+P P+  W    + +     S    + G  +         AG YQC A+
Sbjct: 20 GKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLAS 79

Query: 82 NGVG 85
          N VG
Sbjct: 80 NIVG 83

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 4/72 (5%)

Query: 29 TLECKASGNPVPSIIWSKK----DSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
          T+ C ASGNP P I W K     D++     K L   ++ +E  +    G Y+C ATN  
Sbjct: 2  TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSA 61

Query: 85 GDPVTVDMTLEV 96
          G   +    L V
Sbjct: 62 GTRYSAPANLYV 73

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 11/82 (13%)

Query: 25 GGTITLECKASGNPVPSIIWSKKDSSL---------PSGEKSL-EGFSITLEKVDRHQAG 74
          G T+T +C+A+GNP P+I W K+ S            S   S+ +   +T+  V R   G
Sbjct: 1  GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVG 60

Query: 75 VYQCTATNGVGDPVTVDMTLEV 96
           Y C   N V   +     LEV
Sbjct: 61 YYICQTLN-VAGSILTKAYLEV 81

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143283 cd05875, Ig6_hNeurofascin_like, Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 11/78 (14%)

Query: 28 ITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLEKVDRHQA-------GVYQ 77
          I +EC+A GNPVP+  W++        +    S+   S TL  +D           G YQ
Sbjct: 1  IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLV-IDFSGGGRPEDYEGEYQ 59

Query: 78 CTATNGVGDPVTVDMTLE 95
          C A N +G  ++  + L+
Sbjct: 60 CFARNNLGTALSNKILLQ 77

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms. Length = 77

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 37.5 bits (87), Expect = 3e-04
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 6/73 (8%)

Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG------EKSLEGFSITLEKVDRHQA 73
          + V  G  + L+   SG P P++ WS+ D +          E   +  S  +E  +R   
Sbjct: 5  IVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDE 64

Query: 74 GVYQCTATNGVGD 86
          GVY  T TN VG+
Sbjct: 65 GVYTITVTNPVGE 77

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 37.6 bits (87), Expect = 3e-04
 Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 4/72 (5%)

Query: 28 ITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFSITLEKVDRHQAGVYQCTATNG 83
          + L C+A GNPVP+  W +  + + +        ++G  I     +   +G YQC ATN 
Sbjct: 22 VILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNS 81

Query: 84 VGDPVTVDMTLE 95
          +G  ++ +  L+
Sbjct: 82 IGSILSREALLQ 93

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 36.5 bits (84), Expect = 4e-04
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 2/63 (3%)

Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL--EGFSITLEKVDRHQAGVYQCTATN 82
          GG + +ECK    P P   WSK    L +  +    +  S+ +  + +   G Y C A N
Sbjct: 1  GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAEN 60

Query: 83 GVG 85
            G
Sbjct: 61 NRG 63

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 36.9 bits (85), Expect = 4e-04
 Identities = 21/72 (29%), Positives = 36/72 (50%), Gaps = 3/72 (4%)

Query: 26 GTITLECKASGNPVPSIIWSKK--DSSLPSGEKSLEGFSITLEKVDRHQ-AGVYQCTATN 82
          G +++ C+A  NP P   W K   D  L +   S+ G ++ +   D+++ AG Y C  +N
Sbjct: 20 GKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSN 79

Query: 83 GVGDPVTVDMTL 94
            G   + + TL
Sbjct: 80 IYGKVRSREATL 91

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 4/62 (6%)

Query: 25 GGTITLECKASGNPVPSIIWSKK----DSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTA 80
          G T  L+C+  G P P+I WS      + + P   + +   ++ L  V      VYQC A
Sbjct: 1  GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEA 60

Query: 81 TN 82
           N
Sbjct: 61 RN 62

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143211 cd05734, Ig7_DSCAM, Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

 Score = 36.1 bits (83), Expect = 8e-04
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 10/79 (12%)

Query: 28 ITLECKASGNPVPSIIWS-KKDSSLPSGEKS---------LEGFSITLEKVDRHQAGVYQ 77
          +TL C A G P P+I+W   K    P    +         L   S+ ++ V    +G Y 
Sbjct: 1  VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYL 60

Query: 78 CTATNGVGDPVTVDMTLEV 96
          C  +N VG   +  M L V
Sbjct: 61 CKVSNDVGADASKSMVLTV 79

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion. Length = 79

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 35.6 bits (82), Expect = 9e-04
 Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 5/70 (7%)

Query: 28 ITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLEKVDRHQAGVYQCTATNGV 84
          + + C A G+P P+I W+K    +    K   S EG+ + +  V     G Y+C A N +
Sbjct: 1  VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGY-LAIRDVGVADQGRYECVARNTI 59

Query: 85 GDPVTVDMTL 94
          G   +V M L
Sbjct: 60 GY-ASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143258 cd05850, Ig1_Contactin-2, First Ig domain of contactin-2

 Score = 36.1 bits (83), Expect = 0.001
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 4/73 (5%)

Query: 26 GTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFSITLEKVDRHQAGVYQCTAT 81
            +TL C+A  +P  +  W    + +    +S    + G  +         AG YQC A 
Sbjct: 20 EKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAI 79

Query: 82 NGVGDPVTVDMTL 94
          N  G  V+ +  L
Sbjct: 80 NRCGTVVSREANL 92

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing chick retina, corresponding to the period of formation and maturation of AC processes. Length = 94

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 8/71 (11%)

Query: 22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF-------SITLEKVDRHQAG 74
          V    T+   C A+GNP P++ W K        E  + G+       S+ +E V     G
Sbjct: 6  VPAANTVKFRCPAAGNPTPTMRWLKNGKEF-KQEHRIGGYKVRNQHWSLIMESVVPSDKG 64

Query: 75 VYQCTATNGVG 85
           Y C   N  G
Sbjct: 65 NYTCVVENEYG 75

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 5/62 (8%)

Query: 29 TLECKASGNPVPSIIWSKKDSSL-PSGEKSLE----GFSITLEKVDRHQAGVYQCTATNG 83
          +L C A G P+P + W K    + P   K L     G  + +  V     G Y C A N 
Sbjct: 2  SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNE 61

Query: 84 VG 85
           G
Sbjct: 62 AG 63

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 34.1 bits (78), Expect = 0.004
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 28 ITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGFSITLEKVDRHQAGVYQCTATNG 83
          +TL C   G+P P+  W +  + L  G+     S +  ++TL       +G+Y C A N 
Sbjct: 1  VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNA 60

Query: 84 VG 85
           G
Sbjct: 61 FG 62

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143282 cd05874, Ig6_NrCAM, Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

 Score = 34.2 bits (78), Expect = 0.004
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 11/72 (15%)

Query: 28 ITLECKASGNPVPSIIWSK--------KDS--SLPSGEKSLEGFSITLEKVDRHQAGVYQ 77
          I ++C+A G P PS  W++        KD   ++     +L    +  EK + ++ GVYQ
Sbjct: 1  IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYE-GVYQ 59

Query: 78 CTATNGVGDPVT 89
          CTA N  G  V+
Sbjct: 60 CTARNERGAAVS 71

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system. Length = 77

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 34.4 bits (79), Expect = 0.004
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 6/80 (7%)

Query: 21 TVRKGGTITLECKASGNPVPSIIWSK-----KDSSLPSGEKSLEGFSITLEKVDRHQAGV 75
           V +GGT T+ C A G+P+P + W         +   + E +++ +++ L  +       
Sbjct: 11 VVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTT 70

Query: 76 YQCTATNGVG-DPVTVDMTL 94
            CTA N VG   V+V +T+
Sbjct: 71 VTCTAENPVGQANVSVQVTV 90

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
KOG3513|consensus	1051		99.88
KOG3513|consensus	1051		99.85
KOG4194|consensus	873		99.76
KOG4194|consensus	873		99.75
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.72
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.7
PHA02785	326	IL-beta-binding protein; Provisional	99.68
PHA02826	227	IL-1 receptor-like protein; Provisional	99.68
KOG4222|consensus	1281		99.66
KOG4221|consensus	1381		99.66
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.62
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.61
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.6
KOG4221|consensus	1381		99.59
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.59
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.59
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.59
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.57
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.57
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.56
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.56
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.56
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.55
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.55
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.54
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.53
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.53
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.52
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.52
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.52
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.52
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.52
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.51
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.51
KOG4222|consensus	1281		99.51
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.51
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.51
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.5
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.5
PHA02785	326	IL-beta-binding protein; Provisional	99.5
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.49
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.49
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.49
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.49
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.49
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.48
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.48
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.48
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.47
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.47
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.46
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.46
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.46
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.46
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.45
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.45
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.45
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.45
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.44
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.44
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.44
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.43
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.43
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.42
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.42
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.42
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.41
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.39
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.39
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.39
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.39
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.39
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.39
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.38
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.36
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.36
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.36
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.35
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.35
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.35
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.35
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.33
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.33
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.32
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.32
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.32
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.31
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.3
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.29
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.28
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.28
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.27
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.27
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.26
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.24
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.21
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.21
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.2
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.19
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.18
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.17
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.15
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.15
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.13
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.13
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.13
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.13
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.12
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.12
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.12
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.12
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.12
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.11
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.1
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.1
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.09
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.09
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.09
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.08
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.08
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.07
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.07
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.06
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.06
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.06
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.05
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.05
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.05
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.05
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.05
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.05
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.04
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.03
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.02
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.02
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.01
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.01
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.0
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.0
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	98.99
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.99
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	98.98
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	98.98
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	98.98
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	98.98
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.97
PHA02826	227	IL-1 receptor-like protein; Provisional	98.96
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.95
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	98.95
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	98.93
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	98.93
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	98.92
smart00409	86	IG Immunoglobulin.	98.92
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.92
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	98.92
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	98.91
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.91
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	98.9
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	98.9
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	98.9
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	98.89
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	98.89
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	98.89
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	98.88
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	98.87
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	98.86
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	98.85
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	98.85
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.84
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.84
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	98.83
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.83
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	98.82
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.8
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.8
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.8
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	98.79
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	98.78
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	98.78
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	98.78
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.77
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.76
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.74
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.74
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	98.73
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	98.73
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	98.72
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.72
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	98.71
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.7
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	98.69
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	98.68
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.67
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.66
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	98.66
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	98.66
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.64
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.63
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.63
KOG3515|consensus	741		98.63
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.62
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	98.62
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	98.62
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.61
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.59
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.58
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.57
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.55
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	98.54
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.53
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	98.51
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	98.49
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	98.49
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	98.47
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	98.45
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.45
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.44
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.44
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.43
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.42
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.41
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.4
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	98.38
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.38
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.38
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.38
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.38
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.37
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.37
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.36
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	98.33
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.31
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.31
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.3
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.3
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.29
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	98.29
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.29
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.27
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.25
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	98.24
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.24
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.22
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.2
PHA02633	63	hypothetical protein; Provisional	98.19
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.19
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.16
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.15
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.12
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	98.11
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.1
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.1
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.07
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	98.05
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.04
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	98.02
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	97.99
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.99
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.99
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	97.97
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.97
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.96
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	97.95
smart00409	86	IG Immunoglobulin.	97.95
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	97.95
smart00408	63	IGc2 Immunoglobulin C-2 Type.	97.94
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	97.91
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.91
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	97.87
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	97.86
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.85
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.84
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.84
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	97.72
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.71
PHA03376	221	BARF1; Provisional	97.7
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.69
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	97.68
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	97.66
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.63
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.6
PF00047	64	ig: Immunoglobulin domain The Prosite family only	97.57
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.57
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.57
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	97.5
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.48
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	97.47
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.46
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	97.45
smart00407	75	IGc1 Immunoglobulin C-Type.	97.4
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	97.38
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.37
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.33
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.28
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	97.26
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.26
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.25
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	97.22
PHA02987	189	Ig domain OX-2-like protein; Provisional	97.21
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	97.18
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	97.16
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	97.14
smart00406	81	IGv Immunoglobulin V-Type.	97.09
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	97.0
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	96.98
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	96.97
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	96.96
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	96.95
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	96.93
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.93
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	96.86
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	96.84
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	96.82
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.81
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.8
KOG3515|consensus	741		96.8
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.77
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	96.76
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	96.73
PHA02633	63	hypothetical protein; Provisional	96.57
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	96.55
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.52
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.52
smart00406	81	IGv Immunoglobulin V-Type.	96.48
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.45
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.43
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.36
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.32
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	96.12
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	96.07
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	96.03
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	96.0
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	95.99
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	95.96
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	95.95
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	95.91
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	95.56
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	95.43
PHA03042	286	CD47-like protein; Provisional	95.38
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.38
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.35
PHA03376	221	BARF1; Provisional	94.82
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	94.66
PHA02982	251	hypothetical protein; Provisional	94.31
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	94.28
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	93.88
KOG1480|consensus	909		93.68
KOG1480|consensus	909		93.56
PHA03270	466	envelope glycoprotein C; Provisional	93.47
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	92.61
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	91.56
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	91.26
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	90.82
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.32
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	89.72
PHA02865	338	MHC-like TNF binding protein; Provisional	88.5
PHA03042	286	CD47-like protein; Provisional	87.95
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	87.87
PHA02914	500	Immunoglobulin-like domain protein; Provisional	85.67
PHA03052	69	Hypothetical protein; Provisional	85.41
KOG4597|consensus	560		85.38
PHA03282	540	envelope glycoprotein E; Provisional	82.64

>KOG3513|consensus

Probab=99.88  E-value=7.3e-21  Score=136.13  Aligned_cols=140  Identities=31%  Similarity=0.515  Sum_probs=112.7

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEeecCCCCeEEEE
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      ..++.+|.+...+.  ...+..|+++.|.|.+.|.|.|.+.|.+++.++....    .....+.|+|.+++..|+|.|.|
T Consensus       326 v~v~a~P~w~~~~~--d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC  403 (1051)
T KOG3513|consen  326 VTVYAPPYWLQKPQ--DTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQC  403 (1051)
T ss_pred             EEEecCchhhcccc--eeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEe
Confidence            34567888887766  5688999999999999999999999999998885332    34577899999999999999999


Q ss_pred             EeecCCCCceEEeEEEEEeee-ecCCCCcc-------------------------------------------ccCCceE
Q psy7616          79 TATNGVGDPVTVDMTLEVLCK-ILPSGEKS-------------------------------------------LEGFSIT  114 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~l~v~~~-~~~~~~~~-------------------------------------------~~~~~~~  114 (147)
                      .+.|..|.. -+.+.|.|... |.+...+.                                           .+.++|.
T Consensus       404 ~A~Nk~G~i-~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~  482 (1051)
T KOG3513|consen  404 IAENKYGTI-YANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLE  482 (1051)
T ss_pred             eeecccceE-eeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEE
Confidence            999988874 56666666543 44432222                                           3456778


Q ss_pred             EeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         115 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       115 l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +.+++++|+|.|+|.|+|..|.+ +.+..|.|
T Consensus       483 I~n~t~~DaG~YtC~A~N~~G~a-~~~~~L~V  513 (1051)
T KOG3513|consen  483 ISNVTRSDAGKYTCVAENKLGKA-ESTGNLIV  513 (1051)
T ss_pred             ecccCcccCcEEEEEEEcccCcc-ceEEEEEE
Confidence            89999999999999999999998 77888876

>KOG3513|consensus

Probab=99.85  E-value=4.2e-20  Score=132.31  Aligned_cols=138  Identities=30%  Similarity=0.468  Sum_probs=110.1

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCC-CCCCce-eeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS-LPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~-~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      ++|.+....+. +.....|+.+.|.|.+.|.|.|.+.|.|.++. ++.... ...+..|.|.+++..|+|.|.|.+.|..
T Consensus       239 ~~P~i~~~~p~-~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~  317 (1051)
T KOG3513|consen  239 YAPKILVPFPE-TETALKGQSVKLECFALGNPTPQIKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSR  317 (1051)
T ss_pred             cCCccccCCCC-cccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEeccc
Confidence            56777666554 56888999999999999999999999998884 333222 3356689999999999999999999998


Q ss_pred             CCceEEeEEEEEeeeecCCCCc-----------------------------c--------------ccCCceEEeecCCC
Q psy7616          85 GDPVTVDMTLEVLCKILPSGEK-----------------------------S--------------LEGFSITLEKVDRH  121 (147)
Q Consensus        85 ~~~~~~~~~l~v~~~~~~~~~~-----------------------------~--------------~~~~~~~l~~~~~~  121 (147)
                      |.. .....+.+..+|.+....                             +              ...+.|.|.+++..
T Consensus       318 G~~-~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~  396 (1051)
T KOG3513|consen  318 GSA-THSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQES  396 (1051)
T ss_pred             ccc-eeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccc
Confidence            864 777778887766554322                             2              22346788999999


Q ss_pred             CCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         122 QAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       122 d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      |+|.|.|.|.|.+|.. ..++.|.|+
T Consensus       397 dsg~YQC~A~Nk~G~i-~anA~L~V~  421 (1051)
T KOG3513|consen  397 DSGVYQCIAENKYGTI-YANAELKVL  421 (1051)
T ss_pred             cCeEEEeeeecccceE-eeeeEEEEE
Confidence            9999999999999998 778888885

>KOG4194|consensus

Probab=99.76  E-value=1.7e-17  Score=113.17  Aligned_cols=137  Identities=28%  Similarity=0.398  Sum_probs=101.2

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC--CCCceEEEecCCCCCCC------------------ceeeeccceEEEe
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN--PVPSIIWSKKDSSLPSG------------------EKSLEGFSITLEK   67 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~~~~~~------------------~~~~~~~~l~~~~   67 (147)
                      +|++...|.  +.....|.+++++|.+.+.  .+.++.|.+++..++.-                  ........|.+.+
T Consensus       503 kpqI~~qPe--~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~n  580 (873)
T KOG4194|consen  503 KPQIVTQPE--TVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDN  580 (873)
T ss_pred             CcceecCch--HhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeee
Confidence            455555555  5577789999999998663  34579999988654321                  0112344688999


Q ss_pred             ecCCCCeEEEEEeecCCCCceEEeEEEEEeeeecC-----------------------------CCCcc-----------
Q psy7616          68 VDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP-----------------------------SGEKS-----------  107 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~~~~-----------------------------~~~~~-----------  107 (147)
                      +...|.|.|.|.+.|.+|...+..+.++|...|.+                             .|.+.           
T Consensus       581 Vt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eR  660 (873)
T KOG4194|consen  581 VTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARER  660 (873)
T ss_pred             eecccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhh
Confidence            99999999999999999888777777777654443                             33332           


Q ss_pred             -----ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 -----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 -----~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                           .+.....+.++..+|+|.|+|.|.|..|.. +.+++|.|+
T Consensus       661 Rl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~  704 (873)
T KOG4194|consen  661 RLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVL  704 (873)
T ss_pred             eeeecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEe
Confidence                 222334558999999999999999999998 889999885

>KOG4194|consensus

Probab=99.75  E-value=4.1e-17  Score=111.40  Aligned_cols=142  Identities=28%  Similarity=0.460  Sum_probs=108.5

Q ss_pred             eeeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCC-CCCC----cee-eeccceEEEeecCCCCeE
Q psy7616           2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS-LPSG----EKS-LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~-~~~~----~~~-~~~~~l~~~~~~~~~~g~   75 (147)
                      +..++..|.|...|.  .+++..|+...+.|-+.|.|.|.+.|.++++. ++.-    .+. .+...+.|.+++.+|.|.
T Consensus       606 KltV~~~PsFtktP~--dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk~eD~Gi  683 (873)
T KOG4194|consen  606 KLTVNQAPSFTKTPE--DLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMPEDDVFFITNVKIEDQGI  683 (873)
T ss_pred             EEEeeccCccccCcc--cceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecCCCCEEEEecccccccce
Confidence            567888999998887  67999999999999999999999999998876 4421    122 245567889999999999


Q ss_pred             EEEEeecCCCCceEEeEEEEEeeeecCCCCcc----cc---------------------------------------CCc
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLCKILPSGEKS----LE---------------------------------------GFS  112 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~----~~---------------------------------------~~~  112 (147)
                      |+|.+.+..|+. ++...+.|...|.+..+-.    ..                                       .+-
T Consensus       684 YtC~A~n~AG~i-sanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~d~pil~t~rh~f~d~dQl  762 (873)
T KOG4194|consen  684 YTCTAQNVAGQI-SANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKEDKPILITERHTFPDGDQL  762 (873)
T ss_pred             eEEeeeccccce-eeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCCCCceEEeecccCCCCCeE
Confidence            999999998884 7888888876544332211    11                                       122


Q ss_pred             eEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         113 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      +.+.+...+|+|.|+|...|..|.- .....+.|+
T Consensus       763 lvv~~~~~~daG~yTcem~~~~~~~-~~~i~l~~~  796 (873)
T KOG4194|consen  763 LVVKENLVEDAGIYTCEMSNTLGTE-RIHICLLVY  796 (873)
T ss_pred             EEEEehhhhhcceEEEEEEeeccce-eeEEEEEEe
Confidence            4447778999999999999999866 666666553

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.72  E-value=3.6e-16  Score=85.82  Aligned_cols=92  Identities=25%  Similarity=0.440  Sum_probs=74.5

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEEeecC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      |.|...+.  .+.+..|+.+.|.|.+.|.|.+.+.|++++..+......     ...+.|.|.++...|+|.|.|.+.|.
T Consensus         1 p~~~~~p~--~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~   78 (98)
T cd05762           1 PQIIQFPE--DMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENK   78 (98)
T ss_pred             CceEECCc--CEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcC
Confidence            44555554  568999999999999999999999999999887543321     13457999999999999999999999


Q ss_pred             CCCceEEeEEEEEeeeecCC
Q psy7616          84 VGDPVTVDMTLEVLCKILPS  103 (147)
Q Consensus        84 ~~~~~~~~~~l~v~~~~~~~  103 (147)
                      .|.. .+.+.|.|...|..+
T Consensus        79 ~G~~-~~~~~l~V~~~P~pP   97 (98)
T cd05762          79 LGSR-QAQVNLTVVDKPDPP   97 (98)
T ss_pred             CCce-eEEEEEEEecCCCCC
Confidence            9986 778888888777543

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.70  E-value=1.1e-15  Score=82.36  Aligned_cols=86  Identities=30%  Similarity=0.522  Sum_probs=69.5

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-eeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-LEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      ||.+...+.  ...+..|+.+.|.|.+.|.|.|.+.|++++..+...... ..+..|.|.++...|+|.|.|.+.|..|.
T Consensus         1 ~p~i~~~~~--~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   78 (88)
T cd05851           1 PADINVKFK--DTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISMSGAVLKIFNIQPEDEGTYECEAENIKGK   78 (88)
T ss_pred             CCceEEccc--cEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEecCCCEEEECcCChhhCEEEEEEEEcCCCc
Confidence            577777766  458899999999999999999999999998777544332 24557999999999999999999999887


Q ss_pred             ceEEeEEEEE
Q psy7616          87 PVTVDMTLEV   96 (147)
Q Consensus        87 ~~~~~~~l~v   96 (147)
                      . ...+.|.|
T Consensus        79 ~-~~~~~l~V   87 (88)
T cd05851          79 D-KHQARVYV   87 (88)
T ss_pred             e-EEEEEEEE
Confidence            5 66665544

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.68  E-value=1.5e-15  Score=99.96  Aligned_cols=116  Identities=20%  Similarity=0.293  Sum_probs=80.4

Q ss_pred             EEeeCCeEEEEEee-----cCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          21 TVRKGGTITLECKA-----SGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        21 ~~~~g~~~~l~C~~-----~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      ....|+++.+.|..     .+.|.+.+.|++++...........+..+.|.++...|+|.|.|.+.|..+.. ...+.|.
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~-~~s~~L~  115 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCD-MMSLNLT  115 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcce-EEEEEEE
Confidence            45579999999986     57778899999987543221112234457788999999999999999976543 4444444


Q ss_pred             Eeee------------------------------------ecCCCCcc----------ccCCceEEeecCCCCCeEEEEE
Q psy7616          96 VLCK------------------------------------ILPSGEKS----------LEGFSITLEKVDRHQAGVYQCT  129 (147)
Q Consensus        96 v~~~------------------------------------~~~~~~~~----------~~~~~~~l~~~~~~d~G~Y~C~  129 (147)
                      |...                                    |.+.|.+.          ..+..|.+.+++.+|+|.|+|.
T Consensus       116 V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~  195 (326)
T PHA02785        116 IVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIEDVRKNDAGYYTCV  195 (326)
T ss_pred             EEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEeecChhhCeEEEEE
Confidence            3211                                    11222211          1234688899999999999999


Q ss_pred             eecCCCCC
Q psy7616         130 ATNGVGDP  137 (147)
Q Consensus       130 a~n~~g~~  137 (147)
                      |.|..|..
T Consensus       196 ~~n~~g~~  203 (326)
T PHA02785        196 LKYIYGDK  203 (326)
T ss_pred             EEeccCCE
Confidence            99998865

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.68  E-value=1e-15  Score=95.61  Aligned_cols=128  Identities=17%  Similarity=0.289  Sum_probs=85.4

Q ss_pred             ceEEeeCCeEEEEEeecCC-----------CCCceEEEecCCCC---CC-----------CceeeeccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASGN-----------PVPSIIWSKKDSSL---PS-----------GEKSLEGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-----------~~~~v~w~~~~~~~---~~-----------~~~~~~~~~l~~~~~~~~~~   73 (147)
                      .+.+..|+++.|.|.+.+.           ..+.+.|++++...   ..           .........|.|.+++..|+
T Consensus        31 ~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~~~Ds  110 (227)
T PHA02826         31 PVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVINIDE  110 (227)
T ss_pred             eEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCChHHC
Confidence            4578899999999997553           34589999986421   00           00011245899999999999


Q ss_pred             eEEEEEeecCCCCceEEeEEEEEee----------------------------eecCCCCcc-------------ccCCc
Q psy7616          74 GVYQCTATNGVGDPVTVDMTLEVLC----------------------------KILPSGEKS-------------LEGFS  112 (147)
Q Consensus        74 g~y~C~~~~~~~~~~~~~~~l~v~~----------------------------~~~~~~~~~-------------~~~~~  112 (147)
                      |.|.|.+.+..+.. ...+.|.|..                            .|.+.|.++             ..+..
T Consensus       111 G~Y~C~a~N~~~~~-~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~  189 (227)
T PHA02826        111 GIYICTISSGNICE-ESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNST  189 (227)
T ss_pred             EEEEEEEEECCcce-EEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCE
Confidence            99999999866542 3333333321                            133455444             12346


Q ss_pred             eEEeecCCCCCeEEEEEeecCC-CCC--cCeeeEEEEC
Q psy7616         113 ITLEKVDRHQAGVYQCTATNGV-GDP--VTVDMTLEVL  147 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a~n~~-g~~--~~~~~~l~V~  147 (147)
                      |.+.+++.+|+|.|+|.|+... |..  .+..+.|+|+
T Consensus       190 L~I~~V~~~DsG~YtC~a~~~~~g~~y~~t~~~~~~~~  227 (227)
T PHA02826        190 LVIKSATHDDSGIYTCNLRFNKNSNNYNITKEYKVTII  227 (227)
T ss_pred             EEECcCCHHhCEEEEEEEEEeECCEEEEEEEEEEEEEC
Confidence            8889999999999999999876 333  3455555553

>KOG4222|consensus

Probab=99.66  E-value=1.2e-15  Score=109.85  Aligned_cols=140  Identities=34%  Similarity=0.529  Sum_probs=102.0

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCC-----CceeeeccceEEEee-----cCCCCeE
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS-----GEKSLEGFSITLEKV-----DRHQAGV   75 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~-----~~~~~~~~~l~~~~~-----~~~~~g~   75 (147)
                      ..+|.++.-|.  .+.+..+++++|.|.+.|.|.|.+.|+++|.....     .........|.+..+     ...|.|.
T Consensus        29 d~~p~iiehp~--d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~lp~gsLf~l~~ahg~~a~~d~G~  106 (1281)
T KOG4222|consen   29 DQPPRIIEHPH--DLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLLPDGSLFLLRLAHGKKAGHDHGV  106 (1281)
T ss_pred             cCCCceEecch--hhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceecCCccEEEEecccCCcccCCCce
Confidence            35777777776  55889999999999999999999999999954321     122333344433322     2348899


Q ss_pred             EEEEeecCCCCceEEeEEEEEeee-------------------------------ecCCCCcc--------------ccC
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLCK-------------------------------ILPSGEKS--------------LEG  110 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~~-------------------------------~~~~~~~~--------------~~~  110 (147)
                      |.|.+.|..+...+....|.+...                               |.+.|.++              ..|
T Consensus       107 y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisg  186 (1281)
T KOG4222|consen  107 YSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISG  186 (1281)
T ss_pred             eEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecC
Confidence            999999988776555555555431                               22233332              567


Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      +.+.+.++++.|+|.|.|.+.|.+|...+..++|.|+
T Consensus       187 G~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~  223 (1281)
T KOG4222|consen  187 GNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQ  223 (1281)
T ss_pred             CcEEEeccccCCCceeeeeecccccccccccceeeec
Confidence            7888899999999999999999999998888888875

>KOG4221|consensus

Probab=99.66  E-value=5.1e-15  Score=107.36  Aligned_cols=137  Identities=25%  Similarity=0.445  Sum_probs=99.9

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc--eeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--KSLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      .+.|...+.  ..++..|+.+.|.|.+.+.+.+.+.|.++..+++...  ....++.|.|..+...|.|.|+|.+.+...
T Consensus       140 ~~~f~~~~~--~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~  217 (1381)
T KOG4221|consen  140 LADFALQPE--STTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPSGALEISGLQPSDTGEYRCVVTGGAS  217 (1381)
T ss_pred             cCccccCcc--ceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCCCcEEecccccCCCceEEEEEecCCc
Confidence            345544554  4489999999999999998888999999998775433  345788899999999999999999998654


Q ss_pred             CceEEeEEEEEee-----------------------------------eecCCCCcc-------------ccCCceEEee
Q psy7616          86 DPVTVDMTLEVLC-----------------------------------KILPSGEKS-------------LEGFSITLEK  117 (147)
Q Consensus        86 ~~~~~~~~l~v~~-----------------------------------~~~~~~~~~-------------~~~~~~~l~~  117 (147)
                      ...+....+++..                                   .|.+.|..+             ..+.++.+.+
T Consensus       218 ~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~  297 (1381)
T KOG4221|consen  218 QRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISN  297 (1381)
T ss_pred             CCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEec
Confidence            4444444444442                                   244455544             2355667799


Q ss_pred             cCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         118 VDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       118 ~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ++..|+|.|+|.|.|..... ...+.|+|+
T Consensus       298 a~~~dSg~YtC~Atn~~D~i-dasaev~V~  326 (1381)
T KOG4221|consen  298 ATDDDSGKYTCRATNTNDSI-DASAEVTVL  326 (1381)
T ss_pred             cccccCceEEEEecCCCccc-ccceEEEEE
Confidence            99999999999999965444 445555553

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.62  E-value=1.5e-14  Score=78.27  Aligned_cols=87  Identities=29%  Similarity=0.473  Sum_probs=67.8

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--eeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--LEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      |.+.......+..+..|+.++|.|.+.+. .|.+.|++++..+......  .....|.|.+++..|+|.|.|.+.|..|.
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNRTLTFNNVTRSDTGHYQCEASNEVSN   80 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCCEEEECcCChhhCEEEEEEEEcCCCC
Confidence            44544444446688999999999999998 8999999998776543221  23457999999999999999999999888


Q ss_pred             ceEEeEEEEE
Q psy7616          87 PVTVDMTLEV   96 (147)
Q Consensus        87 ~~~~~~~l~v   96 (147)
                      ..+..+.|.|
T Consensus        81 ~~S~~~~L~V   90 (91)
T cd05740          81 MTSDPYILNV   90 (91)
T ss_pred             EEeeeEEEEe
Confidence            6666766655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.61  E-value=1.6e-14  Score=79.06  Aligned_cols=89  Identities=35%  Similarity=0.674  Sum_probs=69.8

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-cee---eeccceEEEeecCCCCeEEEEEeecC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-EKS---LEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      ||.+...+...+..+..|+.+.|.|.+.|.|.+.+.|++++..+... ...   .....|.|.++...|.|.|.|.+.|.
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   80 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENK   80 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcC
Confidence            56666655544567899999999999999999999999998776543 111   23446999999999999999999999


Q ss_pred             CCCceEEeEEEEEe
Q psy7616          84 VGDPVTVDMTLEVL   97 (147)
Q Consensus        84 ~~~~~~~~~~l~v~   97 (147)
                      .|.. ...+.|.|.
T Consensus        81 ~G~~-~~~~~L~V~   93 (95)
T cd05730          81 AGEQ-EAEIHLKVF   93 (95)
T ss_pred             CCeE-EEEEEEEEE
Confidence            8875 677777664

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.60  E-value=6.7e-14  Score=75.47  Aligned_cols=85  Identities=36%  Similarity=0.583  Sum_probs=66.0

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-eeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      |.+...+.  ...+..|+.+.|.|.+.+.|.|.+.|++++..+.... .......|.|.+++.+|+|.|.|.+.|..|..
T Consensus         2 ~~~~~~p~--~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   79 (88)
T cd04968           2 SIIVVFPK--DTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDEGTYECEAENIKGKD   79 (88)
T ss_pred             CcEEECCC--ceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEEeCCEEEECCCCcccCEEEEEEEEECCCcE
Confidence            44445554  5578899999999999999999999999877654322 22356689999999999999999999988875


Q ss_pred             eEEeEEEEE
Q psy7616          88 VTVDMTLEV   96 (147)
Q Consensus        88 ~~~~~~l~v   96 (147)
                       .....|.|
T Consensus        80 -~~~~~l~V   87 (88)
T cd04968          80 -THQGRIYV   87 (88)
T ss_pred             -EEEEEEEE
Confidence             55555544

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>KOG4221|consensus

Probab=99.59  E-value=8.4e-15  Score=106.28  Aligned_cols=125  Identities=25%  Similarity=0.458  Sum_probs=96.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce---eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      ...+..|+++.|.|.+.+.+.|.|.|.+++..+.-+..   ....+.|.+.+++..|+|.|+|++.|.... ..+...+.
T Consensus       246 ~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~-idasaev~  324 (1381)
T KOG4221|consen  246 NAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDS-IDASAEVT  324 (1381)
T ss_pred             ccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecccceEEeccccccCceEEEEecCCCcc-cccceEEE
Confidence            55888999999999999999999999999887743322   335678999999999999999999984433 25556667


Q ss_pred             EeeeecCCCCcc-----------------------------------------ccCCceEEeecCCCCCeEEEEEeecCC
Q psy7616          96 VLCKILPSGEKS-----------------------------------------LEGFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus        96 v~~~~~~~~~~~-----------------------------------------~~~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      |..+|.+...+.                                         ..++.+.+..+-..|.|.|.|.+.|..
T Consensus       325 V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v~w~kNgd~~ipsdy~ki~~~~~lrIlgi~~sdeg~yQcvaen~~  404 (1381)
T KOG4221|consen  325 VLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTVRWYKNGDRIIPSDYFKIVGGGNLRILGIVKSDEGFYQCVAENDA  404 (1381)
T ss_pred             EEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceEEEEecCcccCcccceEecCCCCcEEEEEecccchhhhhhhccCc
Confidence            766655543322                                         234447778888999999999999999


Q ss_pred             CCCcCeeeEEE
Q psy7616         135 GDPVTVDMTLE  145 (147)
Q Consensus       135 g~~~~~~~~l~  145 (147)
                      |.+ ...++|.
T Consensus       405 G~a-~a~a~l~  414 (1381)
T KOG4221|consen  405 GSA-QAAAQLE  414 (1381)
T ss_pred             ccc-cchhhhe
Confidence            988 5555553

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.59  E-value=3.9e-14  Score=77.96  Aligned_cols=78  Identities=21%  Similarity=0.328  Sum_probs=63.3

Q ss_pred             ceEEeeCCeEEEEEeecC-CCCCceEEEecCCCCCCCcee---e-------eccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKS---L-------EGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      .+.+..|+++.|.|.+.+ .|.|.+.|++++..+......   .       ....|.|..+...|+|.|+|.+.|..|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            568889999999999999 889999999999887633221   1       13679999999999999999999998874


Q ss_pred             eEEeEEEEEe
Q psy7616          88 VTVDMTLEVL   97 (147)
Q Consensus        88 ~~~~~~l~v~   97 (147)
                       +..+.|.|.
T Consensus        92 -~~t~~L~V~  100 (101)
T cd04975          92 -SLTFELYVN  100 (101)
T ss_pred             -EEEEEEEEE
Confidence             666666653

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.59  E-value=3.3e-14  Score=77.26  Aligned_cols=85  Identities=26%  Similarity=0.541  Sum_probs=67.0

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--ee---eccceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SL---EGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~---~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .||.+...|.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+.....  ..   ....|.|.++...|+|.|.|.+.
T Consensus         2 ~~~~~~~~p~--~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   79 (92)
T cd05747           2 LPATILTKPR--SLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVE   79 (92)
T ss_pred             CCCcccccCc--cEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEE
Confidence            3677776665  66899999999999999999999999999877643322  11   23478999999999999999999


Q ss_pred             cCCCCceEEeEEE
Q psy7616          82 NGVGDPVTVDMTL   94 (147)
Q Consensus        82 ~~~~~~~~~~~~l   94 (147)
                      |..|.. +..+.|
T Consensus        80 N~~G~~-~~~~~l   91 (92)
T cd05747          80 NSEGKQ-EAQFTL   91 (92)
T ss_pred             cCCCCE-eEEEEe
Confidence            988874 555443

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.59  E-value=1.4e-14  Score=75.57  Aligned_cols=71  Identities=32%  Similarity=0.606  Sum_probs=57.7

Q ss_pred             eCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        24 ~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      +|+.+.|.|.+.|.|.|.+.|++++..+.....  ......|.|.++...|+|.|.|.+.|..|.. +..+.|.
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~   73 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLT   73 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEe
Confidence            478999999999999999999999877654322  3345689999999999999999999998875 5555553

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.57  E-value=1e-13  Score=76.02  Aligned_cols=85  Identities=35%  Similarity=0.581  Sum_probs=62.8

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc------e-e---eeccceEEEeecCCCCeEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE------K-S---LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~------~-~---~~~~~l~~~~~~~~~~g~y~   77 (147)
                      +|.+...+..  .....|+.+.|.|.+.|.|.|.+.|++++..+....      . .   ...+.|.|.+++..|+|.|.
T Consensus         2 ~p~i~~~~~~--~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~   79 (97)
T cd05869           2 KPKITYVENQ--TAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYL   79 (97)
T ss_pred             CceEEEccCc--eEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEE
Confidence            5666665543  245558999999999999999999999876553211      0 0   11246899999999999999


Q ss_pred             EEeecCCCCceEEeEEEE
Q psy7616          78 CTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        78 C~~~~~~~~~~~~~~~l~   95 (147)
                      |.+.|..|.. +..+.|.
T Consensus        80 C~A~N~~G~~-~~~~~l~   96 (97)
T cd05869          80 CTASNTIGQD-SQSMYLE   96 (97)
T ss_pred             EEEecCCCCe-eEEEEEE
Confidence            9999998886 6665554

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.57  E-value=4.3e-14  Score=74.11  Aligned_cols=71  Identities=28%  Similarity=0.575  Sum_probs=57.3

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCC----ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      |+.+.|.|.+.+.|.|.+.|++++..+...    ........|.|.+++..|+|.|.|.+.|..|.. ...+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence            678999999999999999999998776432    122345679999999999999999999988874 66666654

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.56  E-value=3.4e-14  Score=73.78  Aligned_cols=70  Identities=27%  Similarity=0.541  Sum_probs=56.2

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      |+.+.|.|.+.+.|.|.+.|++++..+....+  ....+.|.|.+++..|.|.|.|.+.|..|.. .....|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEE
Confidence            67899999999999999999998876643322  2355689999999999999999999998875 5555443

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.56  E-value=1.1e-13  Score=74.55  Aligned_cols=77  Identities=21%  Similarity=0.332  Sum_probs=61.8

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCC--ceee--------eccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSG--EKSL--------EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~--~~~~--------~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      |+.+.|.|.+.+.|.+.+.|++++..+...  ....        ..+.|.|.++...|+|.|.|.+.|..|.. +..+.|
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGED-RGIIQL   79 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcc-eEEEEE
Confidence            688999999999999999999998766432  1111        11468899999999999999999999986 788888


Q ss_pred             EEeeeecC
Q psy7616          95 EVLCKILP  102 (147)
Q Consensus        95 ~v~~~~~~  102 (147)
                      .|..+|+.
T Consensus        80 ~V~~~P~~   87 (88)
T cd05735          80 TVQEPPDP   87 (88)
T ss_pred             EEeCCCCC
Confidence            88877754

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.56  E-value=1e-13  Score=75.34  Aligned_cols=76  Identities=30%  Similarity=0.543  Sum_probs=60.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--ee----eccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SL----EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~----~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      .+.+..|+.+.|.|.+.+.|.|.+.|++++..+.....  ..    ....|.|.++...|+|.|.|.+.|..|.. +..+
T Consensus        10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~   88 (92)
T cd05737          10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGE-TVDV   88 (92)
T ss_pred             eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcc-eEEE
Confidence            56889999999999999999999999999877753321  11    12368999999999999999999988875 5555


Q ss_pred             EEE
Q psy7616          93 TLE   95 (147)
Q Consensus        93 ~l~   95 (147)
                      .+.
T Consensus        89 ~v~   91 (92)
T cd05737          89 TVS   91 (92)
T ss_pred             EEe
Confidence            443

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.55  E-value=7.4e-14  Score=74.84  Aligned_cols=76  Identities=29%  Similarity=0.543  Sum_probs=61.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc--e-ee---eccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--K-SL---EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~-~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      .+.+..|+.+.|.|.+.|.|.|.+.|++++..+....  . ..   ....|.|..+...|+|.|.|.+.|..|.. +..+
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~   82 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGED-HASL   82 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcE-EEEE
Confidence            4578899999999999999999999999998775321  1 11   23579999999999999999999999875 5655


Q ss_pred             EEE
Q psy7616          93 TLE   95 (147)
Q Consensus        93 ~l~   95 (147)
                      .|.
T Consensus        83 ~l~   85 (86)
T cd05894          83 FVK   85 (86)
T ss_pred             EEE
Confidence            554

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.55  E-value=2.4e-13  Score=74.91  Aligned_cols=87  Identities=40%  Similarity=0.709  Sum_probs=62.7

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-----ce--eeeccceEEEe-----ecCCCCeE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----EK--SLEGFSITLEK-----VDRHQAGV   75 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-----~~--~~~~~~l~~~~-----~~~~~~g~   75 (147)
                      ||.+...+.  ...+..|+.+.|.|.+.+.|.|.+.|++++..+...     ..  ......+.+..     +...|+|.
T Consensus         1 ~P~i~~~p~--~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~   78 (100)
T cd07693           1 PPRIVEHPS--DLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGV   78 (100)
T ss_pred             CCeEEecCc--eeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEE
Confidence            577777765  568899999999999999999999999998776431     11  11222222222     26789999


Q ss_pred             EEEEeecCCCCceEEeEEEEE
Q psy7616          76 YQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      |.|.+.|..|...+..+.|.|
T Consensus        79 Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          79 YVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEEccccceecceEEEEe
Confidence            999999998885566665554

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.54  E-value=1.1e-13  Score=74.12  Aligned_cols=76  Identities=32%  Similarity=0.546  Sum_probs=62.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+.... .......|.|.++...|+|.|.|.+.|..|.. ...+.|.
T Consensus         8 ~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   84 (85)
T cd05728           8 DTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVEAGDLRITKLSLSDSGMYQCVAENKHGTI-YASAELA   84 (85)
T ss_pred             ccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEeCCEEEEeeCCHHHCEEEEEEEECCCCeE-EEEEEEE
Confidence            4588899999999999999999999999988775432 23356679999999999999999999988874 5555553

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.53  E-value=5.5e-14  Score=72.26  Aligned_cols=59  Identities=24%  Similarity=0.394  Sum_probs=50.3

Q ss_pred             EEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          29 TLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        29 ~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      .|.|.+.|.|.|.+.|++++.++...........|.|.++...|+|.|+|.+.|..|..
T Consensus         2 ~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~G~~   60 (70)
T cd05864           2 KIPVKYYGYPPPEVKWYKNGQLIVLNHTFKRGVHLTIYEVTEKDAGNYTVVLTNPITKE   60 (70)
T ss_pred             EEEeEEEEeCCCEEEEEECCEECCCCCEEccCCEEEECcCCHHHCEEEEEEEEECCCce
Confidence            68999999999999999999888654444445579999999999999999999998765

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.53  E-value=2e-13  Score=76.39  Aligned_cols=94  Identities=21%  Similarity=0.428  Sum_probs=67.6

Q ss_pred             EeCCceEEcCCCCceEE--eeCCeEEEEEeecCCCCCceEEEecCCCCCCC-cee---------eeccceEEEeec-CCC
Q psy7616           6 MVPPSIRTSPSNGQLTV--RKGGTITLECKASGNPVPSIIWSKKDSSLPSG-EKS---------LEGFSITLEKVD-RHQ   72 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~--~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-~~~---------~~~~~l~~~~~~-~~~   72 (147)
                      .++|.+...+.......  ..|..+.|.|.+.|.|.+.+.|++++..+... ...         ...+.|.|.++. ..|
T Consensus         2 ~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D   81 (109)
T cd05773           2 RFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALD   81 (109)
T ss_pred             ccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCC
Confidence            45777766655322211  24578999999999999999999998776421 111         013468888887 589


Q ss_pred             CeEEEEEeecCCCCceEEeEEEEEeeee
Q psy7616          73 AGVYQCTATNGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        73 ~g~y~C~~~~~~~~~~~~~~~l~v~~~~  100 (147)
                      .|.|.|.+.|..|.. ...+.|.+..+|
T Consensus        82 ~G~Y~C~A~N~~G~~-~~~i~L~~~~~p  108 (109)
T cd05773          82 YALFTCTAHNSLGED-SLDIQLVSTSRP  108 (109)
T ss_pred             CEEEEEEEEeCCccC-cEEEEEEecCCC
Confidence            999999999999886 777777776655

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.52  E-value=3.8e-13  Score=73.32  Aligned_cols=83  Identities=25%  Similarity=0.513  Sum_probs=59.7

Q ss_pred             CceEEcCCCCceEEe---eCCeEEEEEeecCCCCCceEEEecCCCCCCCc---eeeeccceEEEeec-CCCCeEEEEEee
Q psy7616           9 PSIRTSPSNGQLTVR---KGGTITLECKASGNPVPSIIWSKKDSSLPSGE---KSLEGFSITLEKVD-RHQAGVYQCTAT   81 (147)
Q Consensus         9 p~~~~~~~~~~~~~~---~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~---~~~~~~~l~~~~~~-~~~~g~y~C~~~   81 (147)
                      |.|...|.  .+.+.   .|+.+.|.|.+.|.|.|.+.|++++..+....   .....+.|.|.++. ..|+|.|.|.+.
T Consensus         2 P~f~~~p~--~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPD--DAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCC--cEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEE
Confidence            45555554  22332   46899999999999999999999988774321   22345678888774 689999999999


Q ss_pred             cCCCCceEEeEE
Q psy7616          82 NGVGDPVTVDMT   93 (147)
Q Consensus        82 ~~~~~~~~~~~~   93 (147)
                      |..|...+..+.
T Consensus        80 N~~G~~~S~~~~   91 (94)
T cd05848          80 NSIGSILSREAL   91 (94)
T ss_pred             cCCCeEEeccEE
Confidence            998875444433

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.52  E-value=4.9e-13  Score=73.01  Aligned_cols=78  Identities=17%  Similarity=0.398  Sum_probs=58.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCC-CceEEEe-cCCCCCC-Cce--eee----ccceEEEeecCCCCeEEEEEeecCCCCceE
Q psy7616          19 QLTVRKGGTITLECKASGNPV-PSIIWSK-KDSSLPS-GEK--SLE----GFSITLEKVDRHQAGVYQCTATNGVGDPVT   89 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~-~~v~w~~-~~~~~~~-~~~--~~~----~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   89 (147)
                      ...+..|+.+.|.|.+.+.|. |.+.|++ ++..+.. ...  ...    .+.|.|.+++..|+|.|+|.+.|..+....
T Consensus         9 ~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~   88 (96)
T cd05865           9 QGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESE   88 (96)
T ss_pred             ccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEE
Confidence            447889999999999999884 6999998 5655433 211  111    257999999999999999999998744446


Q ss_pred             EeEEEEE
Q psy7616          90 VDMTLEV   96 (147)
Q Consensus        90 ~~~~l~v   96 (147)
                      +.+.|.+
T Consensus        89 ~s~~l~v   95 (96)
T cd05865          89 ATVNVKI   95 (96)
T ss_pred             EEEEEEE
Confidence            6666554

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.52  E-value=2.5e-13  Score=74.86  Aligned_cols=76  Identities=16%  Similarity=0.218  Sum_probs=61.7

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----------eeccceEEEeecCCCCeEEEEEeecCCCCce
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----------LEGFSITLEKVDRHQAGVYQCTATNGVGDPV   88 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   88 (147)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++.++..+...           ...+.|.|.++...|+|.|+|.+.|..+.. 
T Consensus        13 ~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~-   91 (101)
T cd05859          13 EFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK-   91 (101)
T ss_pred             EEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE-
Confidence            46778899999999999999999999999887643321           123579999999999999999999998774 


Q ss_pred             EEeEEEEE
Q psy7616          89 TVDMTLEV   96 (147)
Q Consensus        89 ~~~~~l~v   96 (147)
                      +..+.+.|
T Consensus        92 ~~t~~l~V   99 (101)
T cd05859          92 SYTFALQI   99 (101)
T ss_pred             EEEEEEEE
Confidence            66666654

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.52  E-value=1.4e-13  Score=72.06  Aligned_cols=71  Identities=34%  Similarity=0.605  Sum_probs=56.3

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCC----ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      |+++.|.|.+.|.|.|.+.|++++.++...    ........|.+.+++..|.|.|.|.+.|..|.. .+.+.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence            678899999999999999999998876421    112234578889999999999999999998875 66665554

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.52  E-value=3.3e-13  Score=73.05  Aligned_cols=76  Identities=25%  Similarity=0.525  Sum_probs=60.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-----eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      ...+..|+.+.|.|.+.|.|.|.+.|++++..+.....     ......|.|.++...|.|.|.|.+.|..|.. ...+.
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~~~~~   87 (90)
T cd04972           9 ATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQA-NVSVQ   87 (90)
T ss_pred             CEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCce-eEEEE
Confidence            44688999999999999999999999999877643221     1123478999999999999999999998875 55554


Q ss_pred             EE
Q psy7616          94 LE   95 (147)
Q Consensus        94 l~   95 (147)
                      |.
T Consensus        88 L~   89 (90)
T cd04972          88 VT   89 (90)
T ss_pred             Ee
Confidence            43

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.51  E-value=4.8e-13  Score=72.67  Aligned_cols=70  Identities=27%  Similarity=0.535  Sum_probs=54.2

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCC--CceeeeccceEEEeec-CCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPS--GEKSLEGFSITLEKVD-RHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~--~~~~~~~~~l~~~~~~-~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      ++.+.|.|.+.|.|.|.+.|++++..+..  ......++.|.|.++. ..|+|.|.|.+.|..|...+..+.|
T Consensus        19 ~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            44799999999999999999999877642  2223345678888875 5899999999999988765555444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.51  E-value=8.2e-14  Score=70.85  Aligned_cols=65  Identities=22%  Similarity=0.380  Sum_probs=52.7

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      +.|.|.+.|.|.|.+.|++++..+...   .....|.|.++..+|+|.|+|.+.|..|.. +..+.+.+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~---~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l   65 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGK---HSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL   65 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECccc---CCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence            368999999999999999999877532   235689999999999999999999988864 55555544

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>KOG4222|consensus

Probab=99.51  E-value=1.6e-13  Score=99.34  Aligned_cols=137  Identities=27%  Similarity=0.449  Sum_probs=102.8

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCC----ceeeeccceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .+..|.+.+.  .+.+..|+.++|+|.- .+.+-+.+.|.+++.++...    ......+.|+|.++...|.|.|.|.+.
T Consensus       130 lrddfrv~pr--d~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVat  207 (1281)
T KOG4222|consen  130 LRDDFRVSPR--DVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIALISGGNLLISNVRKSDEGTYACVAT  207 (1281)
T ss_pred             echhcccCcc--cccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEEecCCcEEEeccccCCCceeeeeec
Confidence            3455555555  4678889999999974 56677899999999988622    223567789999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeeecCCCCcc-----------------------------------------ccCCceEEeecCC
Q psy7616          82 NGVGDPVTVDMTLEVLCKILPSGEKS-----------------------------------------LEGFSITLEKVDR  120 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~~~~-----------------------------------------~~~~~~~l~~~~~  120 (147)
                      |..+..-+....+++..+|.+...+.                                         ....++.+.++..
T Consensus       208 NmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~tp  287 (1281)
T KOG4222|consen  208 NMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRVTP  287 (1281)
T ss_pred             ccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeeccccccccccCC
Confidence            98888656677788877665543332                                         1113444577888


Q ss_pred             CCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         121 HQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       121 ~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.|.|.|.+.|.+|.- +....|+|
T Consensus       288 ~deg~y~C~a~n~vG~l-~asa~ltV  312 (1281)
T KOG4222|consen  288 TDEGTYVCPAENLVGGL-EASATLTV  312 (1281)
T ss_pred             Ccccceeeecccccccc-ccccceEE
Confidence            99999999999999877 66666665

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.51  E-value=5e-13  Score=71.73  Aligned_cols=76  Identities=28%  Similarity=0.563  Sum_probs=59.8

Q ss_pred             ceEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCC-c--eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          19 QLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSG-E--KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      ...+..|+++.|.|.+ .+.|.+.+.|++++..+... .  .....+.|.|.+++..|+|.|.|.+.|..|...+..+.+
T Consensus         5 ~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l   84 (86)
T cd05724           5 DTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDGNLLIAEARKSDEGTYKCVATNMVGERESAAARL   84 (86)
T ss_pred             cEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCCEEEEeECCcccCEEEEEEEEeccCceeeeeEEE
Confidence            5678899999999997 67888999999998766432 1  122356799999999999999999999888754444444

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.51  E-value=2.3e-13  Score=71.33  Aligned_cols=71  Identities=30%  Similarity=0.541  Sum_probs=57.1

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      |+.+.|.|.+.+.|.|.+.|++++..+....    .......|.|.+++..|+|.|.|.+.|..|.. .+.+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence            6789999999999999999999987764322    23345679999999999999999999988774 66665554

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.50  E-value=1.5e-13  Score=74.41  Aligned_cols=84  Identities=37%  Similarity=0.735  Sum_probs=65.4

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEEeecC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      |.|...+.  .+.+..|+++.|.|.+.+.|.+.+.|++++..+......     .....|.|.++...|+|.|.|.+.+.
T Consensus         1 P~~~~~~~--~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~   78 (90)
T PF07679_consen    1 PVFTKKPK--DVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNS   78 (90)
T ss_dssp             EEEEEESS--EEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEET
T ss_pred             CEEEEecC--CEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEEC
Confidence            45555554  678999999999999998889999999998777543221     13557999999999999999999998


Q ss_pred             CCCceEEeEEEE
Q psy7616          84 VGDPVTVDMTLE   95 (147)
Q Consensus        84 ~~~~~~~~~~l~   95 (147)
                      .+.. +..+.|.
T Consensus        79 ~g~~-~~~~~l~   89 (90)
T PF07679_consen   79 SGEA-TASVNLT   89 (90)
T ss_dssp             TEEE-EEEEEEE
T ss_pred             CCEE-EEEEEEE
Confidence            6654 5555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.50  E-value=2e-13  Score=71.00  Aligned_cols=70  Identities=30%  Similarity=0.527  Sum_probs=56.2

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCCc--eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSGE--KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      |+.+.|.|.+.+.|.+.+.|++++..+....  .......|.|.+++..|+|.|.|.+.|..|.. ...+.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEE
Confidence            6789999999999999999999987764332  23345679999999999999999999998875 5555543

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.50  E-value=1.8e-12  Score=85.52  Aligned_cols=65  Identities=29%  Similarity=0.416  Sum_probs=47.6

Q ss_pred             EEeeCCeEEEEEee-----cCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKA-----SGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        21 ~~~~g~~~~l~C~~-----~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      .+..|+...+.|..     .+.+.+.+.|+++. .+..... ....+.|.|.+++..|.|.|+|.+.+..+.
T Consensus       132 ~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~~~~~r~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~  202 (326)
T PHA02785        132 IVNERSTGEMVCPNINAFIASNVNADIIWSGHR-RLRNKRLKQRTPGIITIEDVRKNDAGYYTCVLKYIYGD  202 (326)
T ss_pred             eecccCcEEEECCChhhcccCCCCceEEEccCC-ccCCcceEecCCCeEEEeecChhhCeEEEEEEEeccCC
Confidence            56688899999962     35578899998754 2322221 223567999999999999999999886554

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.49  E-value=4e-13  Score=71.94  Aligned_cols=75  Identities=25%  Similarity=0.519  Sum_probs=59.0

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee------eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      +.+..|+.+.|.|.+.+.|.|.+.|++++..+......      .....|.|.++...|+|.|.|.+.|..|.. ...+.
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~   82 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYH   82 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEE-EEEEE
Confidence            35778999999999999999999999998876533221      123468888999999999999999998874 66655


Q ss_pred             EE
Q psy7616          94 LE   95 (147)
Q Consensus        94 l~   95 (147)
                      |.
T Consensus        83 l~   84 (85)
T cd05857          83 LD   84 (85)
T ss_pred             EE
Confidence            54

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.49  E-value=7.4e-13  Score=72.53  Aligned_cols=84  Identities=33%  Similarity=0.599  Sum_probs=62.9

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-----e--e---eeccceEEEeecCCCCeEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-----K--S---LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-----~--~---~~~~~l~~~~~~~~~~g~y~   77 (147)
                      +|.+.. +.  +..+..|+.+.|.|.+.+.|.|.+.|++++..+....     .  .   .....|.|.+++..|+|.|.
T Consensus         2 ~P~i~~-~~--~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   78 (96)
T cd05732           2 QPKITY-LE--NQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYD   78 (96)
T ss_pred             Ccccee-cC--ceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeE
Confidence            566643 22  4478899999999999999999999999875553211     1  1   12347899999999999999


Q ss_pred             EEeecCCCCceEEeEEEE
Q psy7616          78 CTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        78 C~~~~~~~~~~~~~~~l~   95 (147)
                      |.+.|..|.. +..+.|.
T Consensus        79 C~a~N~~G~~-~~s~~l~   95 (96)
T cd05732          79 CEASNRIGGD-QQSMYLE   95 (96)
T ss_pred             EEEEeCCCCc-EEEEEEe
Confidence            9999998885 5555543

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.49  E-value=3.1e-13  Score=69.90  Aligned_cols=68  Identities=31%  Similarity=0.571  Sum_probs=54.2

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      +.|.|.+.|.|.|.+.|++++..+.....  ......|.|.+++..|+|.|.|.+.|..|.. +..+.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence            36899999999999999999877654322  2345689999999999999999999998874 66665544

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.49  E-value=1.1e-12  Score=72.11  Aligned_cols=84  Identities=30%  Similarity=0.564  Sum_probs=61.8

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEec--CCCCCC------Cce-ee---eccceEEEeecCCCCe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK--DSSLPS------GEK-SL---EGFSITLEKVDRHQAG   74 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~~~------~~~-~~---~~~~l~~~~~~~~~~g   74 (147)
                      ++|++.. +.  +..+..|+.++|.|.+.|.|.|.+.|++.  +..+..      ... ..   ....|.|.+++..|+|
T Consensus         1 ~~p~i~~-~~--~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G   77 (98)
T cd05870           1 VQPHIIQ-LK--NETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSG   77 (98)
T ss_pred             CCCEEEe-ec--cEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCE
Confidence            3577654 33  56889999999999999999999999994  322211      111 11   2347999999999999


Q ss_pred             EEEEEeecCCCCceEEeEEE
Q psy7616          75 VYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        75 ~y~C~~~~~~~~~~~~~~~l   94 (147)
                      .|.|.+.|..|.. ...+.|
T Consensus        78 ~Y~C~A~N~~G~~-~~~~~l   96 (98)
T cd05870          78 RYDCEAASRIGGH-QKSMYL   96 (98)
T ss_pred             EEEEEEeccCCcc-eeEEEE
Confidence            9999999998875 555544

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.49  E-value=5.2e-13  Score=69.05  Aligned_cols=68  Identities=25%  Similarity=0.588  Sum_probs=53.4

Q ss_pred             eEEEEEeecCCCCCceEEEecCCCCCCCc--eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          27 TITLECKASGNPVPSIIWSKKDSSLPSGE--KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        27 ~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      ++.|.|.+.|.|.|.+.|++++..+....  .......+.+.++...|+|.|.|.+.|..|.. ...+.|.
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~   70 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLI   70 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEE
Confidence            36899999999999999999987764332  22345568888999999999999999988874 5555543

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.48  E-value=2.9e-13  Score=70.55  Aligned_cols=67  Identities=25%  Similarity=0.589  Sum_probs=51.9

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCC-ce--ee-e-c--cceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSG-EK--SL-E-G--FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~-~~--~~-~-~--~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      +.|.|.+.|.|.|.+.|++++..+... .+  .. . .  ..|.|.++...|+|.|+|.+.|..|.. ...+.|.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~   74 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLD   74 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEe
Confidence            468999999999999999998877522 22  11 1 1  269999999999999999999998875 5555553

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.48  E-value=1.7e-12  Score=70.95  Aligned_cols=77  Identities=31%  Similarity=0.595  Sum_probs=58.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEee-----cCCCCeEEEEEeecC-CCCce
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKV-----DRHQAGVYQCTATNG-VGDPV   88 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~-----~~~~~g~y~C~~~~~-~~~~~   88 (147)
                      ...+..|+++.|.|.+.+.|.+.+.|++++..+....    .....+.+.+..+     ...|.|.|.|.+.|. .|...
T Consensus         8 ~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~   87 (95)
T cd05722           8 DIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV   87 (95)
T ss_pred             CeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence            4577889999999999999999999999988775321    1223445666655     578999999999998 88765


Q ss_pred             EEeEEEE
Q psy7616          89 TVDMTLE   95 (147)
Q Consensus        89 ~~~~~l~   95 (147)
                      +..+.|.
T Consensus        88 s~~~~l~   94 (95)
T cd05722          88 SRTARLT   94 (95)
T ss_pred             EeeeEEe
Confidence            6666554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.48  E-value=1.4e-12  Score=68.81  Aligned_cols=74  Identities=20%  Similarity=0.506  Sum_probs=57.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      .+.+..|+.+.|.|.+.+. .+.+.|++++.++..... ......|.|.++...|+|.|.|.+.+..+.. ...+.+
T Consensus         3 ~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~~~~~v   77 (79)
T cd04973           3 SYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRITGEEVQIKDAVPRDSGLYACVTSSPSGSD-TTYFSV   77 (79)
T ss_pred             cEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEeCCEEEECCCChhhCEEEEEEEeCCCCcc-cEEEEE
Confidence            4578899999999999885 568999999988864322 2345678999999999999999999877654 433333

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.47  E-value=2.5e-12  Score=70.11  Aligned_cols=84  Identities=25%  Similarity=0.474  Sum_probs=59.1

Q ss_pred             CceEEcCCCCceEEee---CCeEEEEEeecCCCCCceEEEecCCCCCCC---ceeeeccceEEEeec-CCCCeEEEEEee
Q psy7616           9 PSIRTSPSNGQLTVRK---GGTITLECKASGNPVPSIIWSKKDSSLPSG---EKSLEGFSITLEKVD-RHQAGVYQCTAT   81 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~---g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~---~~~~~~~~l~~~~~~-~~~~g~y~C~~~   81 (147)
                      |.|...|.  .....+   |+.+.|.|.+.+.|.+.+.|++++..+...   ......+.|.|.++. ..|.|.|.|.+.
T Consensus         2 P~f~~~P~--~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g~L~I~~~~~~~D~G~Y~C~A~   79 (94)
T cd05850           2 PVFEEQPS--SLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAGNLVINNPQKARDAGSYQCLAI   79 (94)
T ss_pred             CeeEECCC--CEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECCeEEEccCCccCcCEEEEEEEE
Confidence            44444444  333333   458999999999999999999999877421   122345567787654 589999999999


Q ss_pred             cCCCCceEEeEEE
Q psy7616          82 NGVGDPVTVDMTL   94 (147)
Q Consensus        82 ~~~~~~~~~~~~l   94 (147)
                      |..|...+..+.|
T Consensus        80 N~~G~~~s~~a~l   92 (94)
T cd05850          80 NRCGTVVSREANL   92 (94)
T ss_pred             cCcCcEEEEEEEE
Confidence            9988765555444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.47  E-value=4.7e-13  Score=69.19  Aligned_cols=68  Identities=25%  Similarity=0.439  Sum_probs=53.9

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      +.|.|.+.|.|.|.+.|++++..+..... ......|.|.++...|+|.|+|.+.|..+.. +..+.+.+
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~   69 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKKSGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL   69 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEcCCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence            36899999999999999999988754432 2345679999999999999999999988764 55555544

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.46  E-value=1.6e-12  Score=70.30  Aligned_cols=74  Identities=34%  Similarity=0.556  Sum_probs=57.4

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCC--------CCc--eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLP--------SGE--KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~--------~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      |+.+.|.|.+.+.|.|.+.|++++....        ...  .......|.|.+++..|+|.|.|.+.|..|.. ...+.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l   79 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAYL   79 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEEE
Confidence            6789999999999999999999876431        111  12235579999999999999999999988875 666777


Q ss_pred             EEeee
Q psy7616          95 EVLCK   99 (147)
Q Consensus        95 ~v~~~   99 (147)
                      .|...
T Consensus        80 ~V~~~   84 (90)
T cd05726          80 EVTDV   84 (90)
T ss_pred             EEeec
Confidence            76643

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.46  E-value=1.1e-12  Score=69.75  Aligned_cols=75  Identities=27%  Similarity=0.616  Sum_probs=58.3

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee---eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      +....|+.+.|.|.+.+.|.|.+.|++++..+......   .....|.|.++...|+|.|.|.+.|..|.. ...+.+.
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~   81 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVD   81 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceecCceEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEe
Confidence            35667999999999999899999999998876432221   223578899999999999999999988764 5555443

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.46  E-value=9.2e-13  Score=69.61  Aligned_cols=72  Identities=24%  Similarity=0.436  Sum_probs=55.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      .+.+..|+++.|.|.+.|.|.| .+.|.+++.++... .....+.|.+..+  .|.|.|.|.+.|..|...+...+
T Consensus         7 ~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-~~~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~   79 (81)
T cd05749           7 DLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-PAPSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGT   79 (81)
T ss_pred             ceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-CCCCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEE
Confidence            5688999999999999999999 69999999877531 1123456777665  47899999999998875444433

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.46  E-value=9.5e-13  Score=67.71  Aligned_cols=67  Identities=33%  Similarity=0.748  Sum_probs=53.3

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      +.|.|.+.|.|.|.+.|++++..++.... ......|.|.+++.+|+|.|.|.+.|..|.. ...+.|.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~   68 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEILDDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLT   68 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEeeCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEE
Confidence            36899999999999999999877654332 3356679999999999999999999988875 5555543

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.45  E-value=1.2e-12  Score=69.93  Aligned_cols=74  Identities=26%  Similarity=0.370  Sum_probs=57.6

Q ss_pred             CeEEEEEeecCCCCC--ceEEEecCCCCCCCc---e---e---eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          26 GTITLECKASGNPVP--SIIWSKKDSSLPSGE---K---S---LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        26 ~~~~l~C~~~~~~~~--~v~w~~~~~~~~~~~---~---~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      +++.|.|.+.+.|.|  .+.|++++..+....   .   .   ...+.|.|.+++..|+|.|+|.+.|..+.. ++.+.|
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L   79 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEE
Confidence            467899999998876  589999987764311   1   1   124579999999999999999999998875 778888


Q ss_pred             EEeeee
Q psy7616          95 EVLCKI  100 (147)
Q Consensus        95 ~v~~~~  100 (147)
                      .|..+|
T Consensus        80 ~V~~~P   85 (85)
T cd05854          80 VVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            877654

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.45  E-value=1.2e-12  Score=68.27  Aligned_cols=67  Identities=25%  Similarity=0.539  Sum_probs=53.1

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      +.|.|.+.|.|.|.+.|++++..+......     .....|.|.++...|+|.|.|.+.|..|.. +..+.|.
T Consensus         2 ~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   73 (74)
T cd05748           2 VRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVK   73 (74)
T ss_pred             EEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEE
Confidence            679999999999999999998877433221     124579999999999999999999998874 5555543

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.45  E-value=1.6e-12  Score=70.37  Aligned_cols=76  Identities=25%  Similarity=0.497  Sum_probs=57.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEec-CCCCCCCce--eeec---cceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPSGEK--SLEG---FSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~-~~~~~~~~~--~~~~---~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      ...+..|+.+.|.|.+.|.|. .+.|+++ +..+....+  ....   ..|.|..+..+|+|.|+|.+.|..|......+
T Consensus         9 ~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i   87 (92)
T cd05866           9 KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATV   87 (92)
T ss_pred             ceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEE
Confidence            457889999999999999887 8999985 444332221  2222   27999999999999999999999887645555


Q ss_pred             EEE
Q psy7616          93 TLE   95 (147)
Q Consensus        93 ~l~   95 (147)
                      .|.
T Consensus        88 ~l~   90 (92)
T cd05866          88 VLE   90 (92)
T ss_pred             EEE
Confidence            554

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.45  E-value=1.6e-12  Score=70.60  Aligned_cols=76  Identities=33%  Similarity=0.570  Sum_probs=59.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--e--ee--ccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--S--LE--GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~--~~--~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      .+.+..|+.+.|.|.+.+.|.|.+.|++++..+.....  .  ..  ...|.|.++...|+|.|.|.+.|..|.. ...+
T Consensus        10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~   88 (92)
T cd05891          10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGE-TVDV   88 (92)
T ss_pred             cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCce-eeEE
Confidence            66889999999999998889999999999876643221  1  11  1368899999999999999999988875 5555


Q ss_pred             EEE
Q psy7616          93 TLE   95 (147)
Q Consensus        93 ~l~   95 (147)
                      .+.
T Consensus        89 ~v~   91 (92)
T cd05891          89 TVS   91 (92)
T ss_pred             EEE
Confidence            543

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.44  E-value=7.9e-13  Score=70.80  Aligned_cols=74  Identities=24%  Similarity=0.372  Sum_probs=56.9

Q ss_pred             CeEEEEEeecCCCCC--ceEEEecCCCCCCCc------e---eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          26 GTITLECKASGNPVP--SIIWSKKDSSLPSGE------K---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        26 ~~~~l~C~~~~~~~~--~v~w~~~~~~~~~~~------~---~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      +.+.|.|.+.+.|.+  .+.|++++..+....      .   ....+.|.|.+++..|+|.|+|.+.|..+.. +..+.|
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l   79 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADL   79 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEE
Confidence            467899999988877  568999987764211      0   1234579999999999999999999988774 777778


Q ss_pred             EEeeee
Q psy7616          95 EVLCKI  100 (147)
Q Consensus        95 ~v~~~~  100 (147)
                      .|..+|
T Consensus        80 ~V~~pP   85 (85)
T cd04970          80 IVRGPP   85 (85)
T ss_pred             EEECCC
Confidence            777654

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.44  E-value=8.3e-13  Score=68.84  Aligned_cols=68  Identities=32%  Similarity=0.574  Sum_probs=53.2

Q ss_pred             EEEEeecCCCCCceEEEecCCCCCC--Cce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          29 TLECKASGNPVPSIIWSKKDSSLPS--GEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        29 ~l~C~~~~~~~~~v~w~~~~~~~~~--~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      +|.|.+.|.|.|.+.|++++..+..  ...  ....+.|.|.+++..|+|.|.|.+.|..|...+....+.|
T Consensus         2 ~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           2 TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             EEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            6899999999999999999876642  111  2345578999999999999999999998876556655554

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.44  E-value=7e-13  Score=69.16  Aligned_cols=67  Identities=28%  Similarity=0.582  Sum_probs=51.6

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCC-ce--eeecc----ceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSG-EK--SLEGF----SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~-~~--~~~~~----~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      +.|.|.+.|.|.|.+.|++++..+... .+  .....    .|.|..+...|+|.|+|.+.|..|.. +....|.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~   74 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLD   74 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEe
Confidence            468999999999999999998877532 11  11111    58899999999999999999998875 5555543

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.43  E-value=1.3e-12  Score=69.42  Aligned_cols=74  Identities=18%  Similarity=0.235  Sum_probs=57.7

Q ss_pred             CeEEEEEeecCC--CCCceEEEecCCCCCCC--c-e--e----eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          26 GTITLECKASGN--PVPSIIWSKKDSSLPSG--E-K--S----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        26 ~~~~l~C~~~~~--~~~~v~w~~~~~~~~~~--~-~--~----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      +++.|.|.+...  +.+.+.|++++..+...  . +  .    ...+.|.|.+++..|+|.|+|.+.+..+.. ++...|
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L   79 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADL   79 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEE
Confidence            367899998663  46789999999887521  1 1  1    134579999999999999999999998875 788888


Q ss_pred             EEeeee
Q psy7616          95 EVLCKI  100 (147)
Q Consensus        95 ~v~~~~  100 (147)
                      .|..||
T Consensus        80 ~V~~pP   85 (85)
T cd05853          80 IVRGPP   85 (85)
T ss_pred             EEecCC
Confidence            887765

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.43  E-value=2.1e-12  Score=66.28  Aligned_cols=66  Identities=24%  Similarity=0.540  Sum_probs=50.2

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCCcee-eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      |+.+.|.|.+.|.|.|.+.|++++..+...... .....|.|.++  .|+|.|.|.+.|..|.. .....
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~~~~~L~i~~~--~d~G~Y~C~A~N~~G~~-~~~a~   67 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGRNVLELTNI--YESANYTCVAISSLGMI-EATAQ   67 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceecCccEEEEecc--ccCeeEEEEEEeCCCEE-EEEEE
Confidence            678999999999999999999998776543322 23446777776  47899999999988764 44443

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.42  E-value=1.6e-12  Score=68.16  Aligned_cols=64  Identities=20%  Similarity=0.371  Sum_probs=51.0

Q ss_pred             EEEeecCCCCCceEEEecCCCCCCCcee----------eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          30 LECKASGNPVPSIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        30 l~C~~~~~~~~~v~w~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      ++|.+.|.|.|.+.|++++..+......          .....|.|.++...|+|.|+|.+.|..|.. ++.+.+
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~   76 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSA   76 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCccc-ceEEEe
Confidence            5788899999999999999888543321          123468999999999999999999999875 665544

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.42  E-value=8.2e-13  Score=67.93  Aligned_cols=65  Identities=28%  Similarity=0.581  Sum_probs=51.8

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      +.|.|.+.|.|.|.+.|++++..+.....  ....+.|.|.++...|+|.|.|.+.|..|.. +..+.
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~   67 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLAIRDVGVADQGRYECVARNTIGYA-SVSMV   67 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCCEEEECcCChhhCEEEEEEEECCCCcE-EEEEE
Confidence            46899999999999999999877643322  3346689999999999999999999998875 54443

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.42  E-value=3.7e-12  Score=69.30  Aligned_cols=76  Identities=18%  Similarity=0.322  Sum_probs=57.6

Q ss_pred             ceEEeeCCeEEEEEeecC-----CCCCceEEEecCCCCCC----Cce-eeeccceEEEeecCCCCeEEEEEeecCCCCce
Q psy7616          19 QLTVRKGGTITLECKASG-----NPVPSIIWSKKDSSLPS----GEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPV   88 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-----~~~~~v~w~~~~~~~~~----~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   88 (147)
                      +..+..|+.+.|.|...+     .|.+.+.|++++..+..    ..+ ......|.|.++...|+|.|.|.+.|..+.. 
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~-   86 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKDLLWFLPAALEDSGLYTCVVRNSTYCM-   86 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCCeEEEccCCcccCeEEEEEEcCCCccE-
Confidence            446789999999999888     57889999999866431    111 2235678999999999999999999987764 


Q ss_pred             EEeEEEE
Q psy7616          89 TVDMTLE   95 (147)
Q Consensus        89 ~~~~~l~   95 (147)
                      +..+.|.
T Consensus        87 ~~~~~L~   93 (94)
T cd05756          87 KVSISLT   93 (94)
T ss_pred             EEEEEEE
Confidence            4444443

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.41  E-value=2.7e-12  Score=67.42  Aligned_cols=69  Identities=28%  Similarity=0.621  Sum_probs=52.6

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCCce---e-eeccceEEEeecCCCCeEEEEEeecCCCCce-EEeEEEEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSGEK---S-LEGFSITLEKVDRHQAGVYQCTATNGVGDPV-TVDMTLEV   96 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~---~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~-~~~~~l~v   96 (147)
                      ++|.|.+.|.|.|.+.|++++..+.....   . .....|.|.++...|+|.|.|.+.|..|... +..+.|.|
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v   74 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSI   74 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEE
Confidence            46899999999999999999887744321   1 2335799999999999999999999887642 34555544

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.39  E-value=4e-12  Score=66.40  Aligned_cols=67  Identities=25%  Similarity=0.583  Sum_probs=51.6

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCC-ce--eeec----cceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSG-EK--SLEG----FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~-~~--~~~~----~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      +.|.|.+.|.|.|.+.|++++..+... ..  ....    ..|.|.+++..|+|.|+|.+.|..|.. ...+.|.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   74 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLD   74 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEe
Confidence            368999999999999999999877532 11  1111    259999999999999999999998875 5555543

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.39  E-value=5.9e-12  Score=65.62  Aligned_cols=70  Identities=26%  Similarity=0.563  Sum_probs=53.1

Q ss_pred             CCeEEEEEeecCCCCCceEEEec-CCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKK-DSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~-~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      |+.+.|.|.+.+.|.|.+.|++. +..+.....  ......|.|..+...|+|.|.|.+.|..|.. +..+.+.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEE
Confidence            67899999999999999999974 444332221  2245678999999999999999999988774 5555543

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.39  E-value=3.5e-12  Score=67.48  Aligned_cols=65  Identities=17%  Similarity=0.339  Sum_probs=50.8

Q ss_pred             EEEeecCCCCCceEEEecCCCCCCCcee------------eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          30 LECKASGNPVPSIIWSKKDSSLPSGEKS------------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        30 l~C~~~~~~~~~v~w~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      +.|.+.|.|.|.+.|++++..+......            .....|.|.+++..|+|.|+|.+.|..|.. +..+.+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD-SKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe-eeEEEee
Confidence            5788999999999999999877543321            113368999999999999999999998885 5555543

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.39  E-value=2.3e-12  Score=66.64  Aligned_cols=68  Identities=31%  Similarity=0.630  Sum_probs=52.9

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      +.|.|.+.|.|.|.+.|++++..+.....  ......|.|.++...|+|.|.|.+.|..|.. +..+.+.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence            46899999999999999998876643222  2234579999999999999999999988774 66665544

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.39  E-value=7.8e-12  Score=67.88  Aligned_cols=76  Identities=22%  Similarity=0.444  Sum_probs=55.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEec-CCCCCC-Cc-eee----eccceEEEeecCCCCeEEEEEeecCCCCceEEe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPS-GE-KSL----EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD   91 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~-~~~~~~-~~-~~~----~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   91 (147)
                      ...+..|+.+.|.|.+.|.| +.+.|++. +..+.. .. ...    ....|.|.+++..|+|.|+|.+.|..+....+.
T Consensus         9 ~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~s   87 (92)
T cd04977           9 QGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEAT   87 (92)
T ss_pred             cEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeE
Confidence            56888999999999998876 48999974 443322 11 111    124799999999999999999999866544555


Q ss_pred             EEEE
Q psy7616          92 MTLE   95 (147)
Q Consensus        92 ~~l~   95 (147)
                      +.|.
T Consensus        88 v~l~   91 (92)
T cd04977          88 VNLK   91 (92)
T ss_pred             EEEE
Confidence            5443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.39  E-value=5.6e-12  Score=66.20  Aligned_cols=66  Identities=21%  Similarity=0.442  Sum_probs=52.0

Q ss_pred             ceEEcCCCCceEEeeCCeEEEEEeecCCCC-CceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616          10 SIRTSPSNGQLTVRKGGTITLECKASGNPV-PSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+...|+  ...+..|+.++|.|.+.+.|. ..+.|++++..+..     ..+.|.|.++ ..|+|.|.|.+.+.
T Consensus         2 vv~~~P~--~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-----~~~~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           2 VVSLDPP--WTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-----TTNSYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             eEEeCCC--CeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-----cCCeEEEeec-ccCCEEeEEECCCC
Confidence            3445555  458899999999999988765 46999999876522     3457888888 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.38  E-value=7.5e-12  Score=65.39  Aligned_cols=67  Identities=36%  Similarity=0.640  Sum_probs=50.9

Q ss_pred             EEEEeecCCCCCceEEEecCCCC-CC--Cce---eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          29 TLECKASGNPVPSIIWSKKDSSL-PS--GEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        29 ~l~C~~~~~~~~~v~w~~~~~~~-~~--~~~---~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      .|.|.+.|.|.|.+.|++++... +.  ...   ......|.|.++...|+|.|.|.+.|..|.. ...+.|.|
T Consensus         2 ~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V   74 (75)
T cd05763           2 RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTV   74 (75)
T ss_pred             EeEeecccccCCEEEEEeCCCccCCcccccceEEecCCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEE
Confidence            68999999999999999987632 21  111   1234578999999999999999999988774 66666654

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.36  E-value=2.1e-11  Score=65.81  Aligned_cols=78  Identities=23%  Similarity=0.409  Sum_probs=58.9

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-----ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      .+.+..|+.+.|.|...+ +.+.+.|++++..+...     ........|.|.+++..|+|.|.|.+.+..+........
T Consensus         5 ~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~   83 (89)
T cd04979           5 VVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTEDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYS   83 (89)
T ss_pred             EEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCCCEEEccCCHHHCEEEEEEEecCccceeEeEEE
Confidence            457889999999999876 77889999998766432     112234568899999999999999998766554456666


Q ss_pred             EEEe
Q psy7616          94 LEVL   97 (147)
Q Consensus        94 l~v~   97 (147)
                      +.|.
T Consensus        84 l~V~   87 (89)
T cd04979          84 LNVL   87 (89)
T ss_pred             EEEe
Confidence            6553

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.36  E-value=5.7e-12  Score=66.36  Aligned_cols=63  Identities=29%  Similarity=0.529  Sum_probs=51.4

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCCcee--e---eccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--L---EGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~---~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      |+.+.|.|.+.+.|.|.+.|++++..+....+.  .   ....|.|.++...|+|.|.|.+.|..|..
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~   68 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMV   68 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEE
Confidence            678999999999999999999988766543221  1   23579999999999999999999988765

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.36  E-value=1e-11  Score=67.16  Aligned_cols=71  Identities=30%  Similarity=0.455  Sum_probs=52.4

Q ss_pred             CCeEEEEEeecCCCCCceEEEecC----CCCC-CCc-e--e----------eeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKD----SSLP-SGE-K--S----------LEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~----~~~~-~~~-~--~----------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      |+.+.|.|.+.+.|.|.+.|++++    ..+. ... .  .          .....|.|.+++..|+|.|.|.+.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999963    1111 000 0  0          11246889999999999999999999887


Q ss_pred             ceEEeEEEEE
Q psy7616          87 PVTVDMTLEV   96 (147)
Q Consensus        87 ~~~~~~~l~v   96 (147)
                      . .+.+.|.|
T Consensus        81 ~-~~sa~L~V   89 (90)
T cd04974          81 S-HHSAWLTV   89 (90)
T ss_pred             c-cCCEEEEe
Confidence            5 55666654

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.35  E-value=9e-12  Score=65.76  Aligned_cols=68  Identities=31%  Similarity=0.600  Sum_probs=50.8

Q ss_pred             EEEEEeecCCCCCceEEEecCCCC-C-------CC--ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSL-P-------SG--EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~-~-------~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      ++|.|.+.|.|.|.+.|++.+... +       ..  ........|.|.++...|+|.|.|.+.|..|...+..+.|.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~   78 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLT   78 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEEecCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEe
Confidence            468999999999999999965421 1       01  11234567999999999999999999999887655555553

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.35  E-value=6.4e-12  Score=64.76  Aligned_cols=58  Identities=22%  Similarity=0.422  Sum_probs=47.3

Q ss_pred             EEEEeecCCCCCceEEEecCCCCCCC--ceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          29 TLECKASGNPVPSIIWSKKDSSLPSG--EKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        29 ~l~C~~~~~~~~~v~w~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      .|.|...|.|.|.+.|++++.++...  ........|.|.+++..|+|.|+|.+.+....
T Consensus         2 ~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~a~~~~~~   61 (72)
T cd07702           2 RLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGYSLVIKDVTEEDAGIYTILLGIKQYN   61 (72)
T ss_pred             eEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCCEEEECcCCHHHCEEEEEEEEccccc
Confidence            68899999999999999999887543  22334557999999999999999999986443

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.35  E-value=7.3e-12  Score=66.64  Aligned_cols=72  Identities=17%  Similarity=0.346  Sum_probs=55.9

Q ss_pred             EEeeCCeEEEEEeecC-CCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          21 TVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      .+..|++++|.|...+ .+.+.+.|++++..+..   ......+.|.+++.+|+|.|.|.+.+..+...+..+.++
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~---~~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~   82 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKY---SHSNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSIT   82 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEccc---cCCCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEE
Confidence            7889999999999754 45667999999865532   223457899999999999999999998776555555554

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.35  E-value=1.6e-11  Score=65.03  Aligned_cols=70  Identities=27%  Similarity=0.512  Sum_probs=52.4

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCC---CC--CCCc-----eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDS---SL--PSGE-----KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~---~~--~~~~-----~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      |+.+.|.|.+.+.|.|.+.|+++..   .+  ....     .......|.|.++...|+|.|.|.+.|..|.. ...+.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l   79 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFPL   79 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEccccEEEEccCCcccCEEEEEEEecCCceE-EEEEEE
Confidence            6789999999999999999999732   11  1100     11233578999999999999999999998874 666655


Q ss_pred             E
Q psy7616          95 E   95 (147)
Q Consensus        95 ~   95 (147)
                      .
T Consensus        80 ~   80 (81)
T cd05765          80 S   80 (81)
T ss_pred             e
Confidence            4

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.33  E-value=1.7e-11  Score=66.28  Aligned_cols=71  Identities=32%  Similarity=0.463  Sum_probs=52.3

Q ss_pred             CCeEEEEEeecCCCCCceEEEecC----CCCCC-Cc---eee----------eccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKD----SSLPS-GE---KSL----------EGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~----~~~~~-~~---~~~----------~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      |+.+.|.|.+.+.|.|.+.|++..    ..+.. ..   ...          ....|.|.+++..|+|.|+|.+.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            678999999999999999999843    22211 10   000          1246999999999999999999999887


Q ss_pred             ceEEeEEEEE
Q psy7616          87 PVTVDMTLEV   96 (147)
Q Consensus        87 ~~~~~~~l~v   96 (147)
                      . ...+.|.|
T Consensus        81 ~-~~~a~L~V   89 (90)
T cd05858          81 S-HHSAWLTV   89 (90)
T ss_pred             c-cceEEEEE
Confidence            5 55555554

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.33  E-value=1.2e-11  Score=64.88  Aligned_cols=65  Identities=23%  Similarity=0.645  Sum_probs=48.4

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCCC--ce--e-eeccceEEEeecC----CCCeEEEEEeecCCCCceEEeE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPSG--EK--S-LEGFSITLEKVDR----HQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~~--~~--~-~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      +.|.|.+.|.|.|.+.|++++..+...  ..  . ...+.|.|..+..    .|+|.|.|.+.|..|...+..+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEI   74 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEcccc
Confidence            468999999999999999998876422  11  1 2356788887653    6899999999999887644443

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.32  E-value=1.9e-11  Score=64.13  Aligned_cols=66  Identities=29%  Similarity=0.594  Sum_probs=47.8

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCCC--Cce--e-eeccceEEEeecC----CCCeEEEEEeecCCCCceEEeEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLPS--GEK--S-LEGFSITLEKVDR----HQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~~--~~~--~-~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      +.|.|.+.|.|.|.+.|++++..+..  ...  . ...+.|.|..+..    .|.|.|.|.+.|..|...+..+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIV   75 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEE
Confidence            46899999999999999999876521  111  1 2356677776654    37899999999988876444443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.32  E-value=2.7e-11  Score=64.66  Aligned_cols=70  Identities=19%  Similarity=0.384  Sum_probs=52.7

Q ss_pred             CCeEEEEEeecCC--CCCceEEEecCCCCCCCce----------eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          25 GGTITLECKASGN--PVPSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        25 g~~~~l~C~~~~~--~~~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      |+.+.|.|.+.+.  +.+.+.|.+++..+.....          ....+.|.|.+++..|+|.|.|.+.+..+.. +...
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s~   79 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ-KEST   79 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce-EEEE
Confidence            6889999999988  7788999987755421110          1134579999999999999999999987764 5555


Q ss_pred             EEE
Q psy7616          93 TLE   95 (147)
Q Consensus        93 ~l~   95 (147)
                      .+.
T Consensus        80 ~v~   82 (84)
T cd05742          80 KVN   82 (84)
T ss_pred             EEE
Confidence            554

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.32  E-value=3.4e-11  Score=65.28  Aligned_cols=65  Identities=31%  Similarity=0.615  Sum_probs=49.9

Q ss_pred             eCCeEEEEEeecCCCCCceEEEecCCCCCC---CceeeeccceEEEeec-CCCCeEEEEEeecCCCCce
Q psy7616          24 KGGTITLECKASGNPVPSIIWSKKDSSLPS---GEKSLEGFSITLEKVD-RHQAGVYQCTATNGVGDPV   88 (147)
Q Consensus        24 ~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~---~~~~~~~~~l~~~~~~-~~~~g~y~C~~~~~~~~~~   88 (147)
                      .++.+.|.|.+.+.|.+.+.|++++..+..   .......+.|.|.++. ..|+|.|.|.+.|..|...
T Consensus        18 ~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~   86 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPSKAKDAGRYQCLASNIVGTVL   86 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECCEEEEecCCccCCCEEEEEEEEcCCCEEE
Confidence            346799999999889999999999877632   1222345578887776 4899999999999887653

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.31  E-value=1.5e-11  Score=64.19  Aligned_cols=60  Identities=23%  Similarity=0.489  Sum_probs=47.9

Q ss_pred             EEEEEeecC-CCCCceEEEecCCCCCCCcee--------eeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          28 ITLECKASG-NPVPSIIWSKKDSSLPSGEKS--------LEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        28 ~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      +.|.|.+.+ .|.+.+.|++++..+......        .....|.|.++...|+|.|.|.+.|..|..
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   69 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGND   69 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCce
Confidence            468999998 899999999998877532211        123568999999999999999999988764

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.30  E-value=3.1e-11  Score=63.19  Aligned_cols=68  Identities=26%  Similarity=0.478  Sum_probs=52.8

Q ss_pred             EEEEeecCCCCCceEEEecCCCCCCCc----ee-eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          29 TLECKASGNPVPSIIWSKKDSSLPSGE----KS-LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        29 ~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      .|.|.+.|.|.|.+.|++++..+....    .. .....|.|.++...|+|.|.|.+.|..|.. +..+.|.|.
T Consensus         2 ~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFVE   74 (76)
T ss_pred             EeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence            588999999999999999987764321    11 123468899999999999999999988875 666666553

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.29  E-value=7.8e-11  Score=63.03  Aligned_cols=68  Identities=26%  Similarity=0.520  Sum_probs=54.9

Q ss_pred             ceEEeeCCeEEEEEeecC-CCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      .+.+..|+.++|.|.+.+ .+.+.+.|++++..++.. .......|.|.+++..|+|.|.|.+.|..+..
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-~~~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~   78 (85)
T cd05754          10 SQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR-AMDFNGILTIRNVQLSDAGTYVCTGSNMLDTD   78 (85)
T ss_pred             ceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc-ccccCCEEEECCCCHHHCEEEEEEEeccCCeE
Confidence            557889999999999864 577889999988765433 22345679999999999999999999987764

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.28  E-value=1.3e-10  Score=63.81  Aligned_cols=82  Identities=28%  Similarity=0.442  Sum_probs=59.3

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCC---ce-eee-------ccceEEEeecCCC-Ce
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSG---EK-SLE-------GFSITLEKVDRHQ-AG   74 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~---~~-~~~-------~~~l~~~~~~~~~-~g   74 (147)
                      ||.+. .+.  ...+..|+.+.|.|.+.+.|.| .+.|++++..+...   .. ...       .+.|.|.+++..| .|
T Consensus         2 pp~i~-~~~--~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G   78 (98)
T cd05758           2 PPIIT-SEA--TQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQT   78 (98)
T ss_pred             CCeEc-CCC--cEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccce
Confidence            45553 333  4578999999999999999998 59999998766432   11 111       1368899999855 89


Q ss_pred             EEEEEeecCCCCceEEeEE
Q psy7616          75 VYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        75 ~y~C~~~~~~~~~~~~~~~   93 (147)
                      .|.|.+.|..|.. ...+.
T Consensus        79 ~Y~C~A~N~~G~~-~~~~~   96 (98)
T cd05758          79 SYNCTAWNSFGSG-TAIIS   96 (98)
T ss_pred             eEEEEEEcCCCcc-cEEEE
Confidence            9999999998875 44443

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.28  E-value=9.8e-11  Score=63.77  Aligned_cols=67  Identities=24%  Similarity=0.432  Sum_probs=51.9

Q ss_pred             CCceEEeeCCeEEEEEeecCCCCCceEEEecCCCC---------CCCcee-e----eccceEEEeecCCCCeEEEEEeec
Q psy7616          17 NGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL---------PSGEKS-L----EGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        17 ~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~---------~~~~~~-~----~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      ..+..+..|+.+.|.|.+.+.+.+.+.|++++..+         ...... .    ....|.|.++...|.|.|.|.+..
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            34678999999999999999889999999877532         111111 1    135799999999999999999887


Q ss_pred             C
Q psy7616          83 G   83 (147)
Q Consensus        83 ~   83 (147)
                      .
T Consensus        84 ~   84 (95)
T cd05882          84 M   84 (95)
T ss_pred             e
Confidence            3

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.27  E-value=5e-11  Score=62.51  Aligned_cols=66  Identities=26%  Similarity=0.568  Sum_probs=47.8

Q ss_pred             EEEEEeecCCCCCceEEEecCCCCC--CCce--e-eeccceEEEeecC----CCCeEEEEEeecCCCCceEEeEE
Q psy7616          28 ITLECKASGNPVPSIIWSKKDSSLP--SGEK--S-LEGFSITLEKVDR----HQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        28 ~~l~C~~~~~~~~~v~w~~~~~~~~--~~~~--~-~~~~~l~~~~~~~----~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      +.|.|.+.|.|.|.+.|++++..+.  ....  . ...+.|.|..+..    .|.|.|.|.+.|..|...+..+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~   75 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKIL   75 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEE
Confidence            4689999999999999999987542  1111  1 2456788876542    36899999999998876555443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.27  E-value=1.2e-11  Score=62.95  Aligned_cols=50  Identities=18%  Similarity=0.127  Sum_probs=37.8

Q ss_pred             EeeeecCCCCcc-------ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616          96 VLCKILPSGEKS-------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus        96 v~~~~~~~~~~~-------~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..++|.+.|.++       ..+..|.+.++..+|+|.|+|.|.|..|.. +.+++++|
T Consensus         9 g~P~P~v~W~kdg~~l~~~~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~l   65 (67)
T cd05863           9 AYPPPEFQWYKDGKLISGKHSQHSLQIKDVTEASAGTYTLVLWNSAAGL-EKRISLEL   65 (67)
T ss_pred             EeCCCEEEEEECCEECcccCCcCEEEECCCCHHHCEEEEEEEEECCccE-EEEEEEEE
Confidence            344555666554       245689999999999999999999999976 55666554

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.26  E-value=4.7e-11  Score=63.75  Aligned_cols=64  Identities=20%  Similarity=0.385  Sum_probs=52.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC--ceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG--EKSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      +..+..|+++.|.|...+ +.+.+.|.+++.++...  ........|.|.+++..|+|.|.|.+.+.
T Consensus         5 ~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~~~~L~I~nv~~~DsG~Y~C~a~e~   70 (87)
T cd05873           5 QRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLYRDGLLIFNASEADAGRYQCLSVEK   70 (87)
T ss_pred             eEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEECCcEEEeCCCHHHCEEEEEEEEec
Confidence            568899999999999754 67789999999887543  23345567999999999999999999764

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.24  E-value=2.4e-11  Score=63.05  Aligned_cols=37  Identities=24%  Similarity=0.418  Sum_probs=33.1

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+.|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        37 ~~g~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~~   73 (73)
T cd05852          37 DDGSLEILNITKLDEGSYTCFAENNRGKA-NSTGVLSV   73 (73)
T ss_pred             CCCEEEECcCChhHCEEEEEEEECCCCce-eEEEEEEC
Confidence            45679999999999999999999999998 77888875

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.21  E-value=3.3e-10  Score=60.43  Aligned_cols=75  Identities=29%  Similarity=0.569  Sum_probs=56.7

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee------eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      +.+..|+.+.|.|.+.+.+.+.+.|++++..+......      .....|.|.++...|.|.|.|.+.+..+.. +..+.
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~   82 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSI-NHTYK   82 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceE-EEEEE
Confidence            35678999999999998888899999998766432111      122358888999999999999999987764 55555


Q ss_pred             EE
Q psy7616          94 LE   95 (147)
Q Consensus        94 l~   95 (147)
                      |.
T Consensus        83 l~   84 (85)
T cd05729          83 VD   84 (85)
T ss_pred             Ee
Confidence            43

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.21  E-value=1.3e-10  Score=61.26  Aligned_cols=78  Identities=32%  Similarity=0.690  Sum_probs=55.7

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCce
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV   88 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   88 (147)
                      |.+...+.    .+..|+.+.|.|.+.+.+...+.|++++..+..     ....+.+..+...|.|.|.|.+.+..+...
T Consensus         2 P~l~~~~~----~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-----~~~~~~~~~~~~~~~g~y~C~~~~~~~~~~   72 (80)
T PF13895_consen    2 PVLSSSPQ----SVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS-----SQNGLFIPNVSPEDSGNYTCRASNGSGSNT   72 (80)
T ss_dssp             -EEEEESS----EEETTSEEEEEEEEESSSSSEEEEEETTEEEEE-----ESSEEEESSEEGGGTEEEEEEEEETTEEEE
T ss_pred             cEEEccce----EEeCCCcEEEEEEEEcccceeeeeeeeeeeeee-----eeeeeeeeeeccccCEEEEEEEEeCCCCeE
Confidence            44544442    688999999999998877889999998755431     112266678889999999999988655433


Q ss_pred             EEeEEEE
Q psy7616          89 TVDMTLE   95 (147)
Q Consensus        89 ~~~~~l~   95 (147)
                      +..+.|.
T Consensus        73 s~~~~v~   79 (80)
T PF13895_consen   73 STSVNVT   79 (80)
T ss_dssp             EEEEEEE
T ss_pred             eeeEEee
Confidence            4555554

...

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.20  E-value=5.2e-10  Score=59.64  Aligned_cols=72  Identities=22%  Similarity=0.438  Sum_probs=51.6

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCCc-----e----eeeccceEEEeecCCCCeEEEEEeecCCC-CceEEeEEE
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSGE-----K----SLEGFSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTL   94 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-----~----~~~~~~l~~~~~~~~~~g~y~C~~~~~~~-~~~~~~~~l   94 (147)
                      |++++|.|.+.+.+.+.+.|.+.++......     .    ......|.|.+++..|+|.|.|.+.+... ......+.+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            6889999999888889999998765322110     0    11245799999999999999999987654 223455555


Q ss_pred             EE
Q psy7616          95 EV   96 (147)
Q Consensus        95 ~v   96 (147)
                      +|
T Consensus        81 ~V   82 (84)
T cd05861          81 TV   82 (84)
T ss_pred             EE
Confidence            54

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.19  E-value=3e-10  Score=61.48  Aligned_cols=67  Identities=21%  Similarity=0.365  Sum_probs=52.8

Q ss_pred             EEeeCCeEEEEEeecC-----CCCCceEEEecCCCCCCCcee-eeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          21 TVRKGGTITLECKASG-----NPVPSIIWSKKDSSLPSGEKS-LEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~-----~~~~~v~w~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      .+..|+...|.|...+     .+.|.+.|++++.++...... ..+..|.|.++...|+|.|+|.+.+..+..
T Consensus         6 ~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~~~~~L~I~~v~~~DsG~YtC~~~n~~~~~   78 (92)
T cd05757           6 ILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGK   78 (92)
T ss_pred             EEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEecCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence            6778999999998543     246789999999887643332 266789999999999999999999865543

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.18  E-value=2.2e-10  Score=59.98  Aligned_cols=60  Identities=18%  Similarity=0.462  Sum_probs=45.5

Q ss_pred             EEEEEeecC-CCCCceEEEecCCCCCCCce-----e----eeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          28 ITLECKASG-NPVPSIIWSKKDSSLPSGEK-----S----LEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        28 ~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~-----~----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      +.|.|.+.+ .|.+.+.|++++..+.....     .    .....|.|.++...|+|.|.|.+.|..|..
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~   70 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGND   70 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCce
Confidence            368999764 57789999999887742210     1    123568999999999999999999988764

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.17  E-value=6.7e-11  Score=61.60  Aligned_cols=37  Identities=30%  Similarity=0.491  Sum_probs=32.9

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ....|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        38 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V   74 (74)
T cd05745          38 SSGTLRISRVALHDQGQYECQAVNIVGSQ-RTVAQLTV   74 (74)
T ss_pred             cCCeEEEeeCCHHhCEEEEEEEEeCCCce-eEEEEEeC
Confidence            35578999999999999999999999988 87888876

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.15  E-value=1.3e-10  Score=60.82  Aligned_cols=38  Identities=34%  Similarity=0.559  Sum_probs=34.2

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+..+.+.+++.+|+|.|+|.|.|.+|.. ..++.|.||
T Consensus        39 ~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v~   76 (76)
T cd05868          39 DGDTIIFSKVQERSSAVYQCNASNEYGYL-LANAFVNVL   76 (76)
T ss_pred             cCCEEEECCCCHhhCEEEEEEEEcCCCEE-EEEEEEEeC
Confidence            35578889999999999999999999999 889999986

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.15  E-value=1e-09  Score=59.82  Aligned_cols=68  Identities=26%  Similarity=0.440  Sum_probs=50.2

Q ss_pred             CceEEeeCCeEEEEEeecCCCCCceEEEecCC--------C-CCCCce-e----eeccceEEEeecCCCCeEEEEEeecC
Q psy7616          18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDS--------S-LPSGEK-S----LEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        18 ~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--------~-~~~~~~-~----~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .++.+.+|+++.|.|...+.+.+.+.|++.+.        . ....+. .    .....|.|.+++.+|+|.|.|.+...
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~   84 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFTM   84 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEee
Confidence            36789999999999999988889999986322        1 111111 1    12347899999999999999999874


Q ss_pred             CC
Q psy7616          84 VG   85 (147)
Q Consensus        84 ~~   85 (147)
                      ..
T Consensus        85 ~~   86 (95)
T cd07701          85 PV   86 (95)
T ss_pred             cC
Confidence            33

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.13  E-value=1.5e-10  Score=60.09  Aligned_cols=37  Identities=27%  Similarity=0.383  Sum_probs=32.8

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ....|.|.+++.+|+|.|+|.|.|.+|.. +.++.|.|
T Consensus        37 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   73 (73)
T cd04969          37 PDGSLEILNVTKSDEGKYTCFAENFFGKA-NSTGSLSV   73 (73)
T ss_pred             CCCeEEEccCChhHCEEEEEEEECCCCce-EEEEEEEC
Confidence            34579999999999999999999999998 87888876

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.13  E-value=1.3e-10  Score=60.51  Aligned_cols=34  Identities=29%  Similarity=0.539  Sum_probs=31.1

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        42 ~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~a~L~V   75 (75)
T cd05892          42 TLLIKNVNKKDAGWYTVSAVNEAGVA-TCHARLDV   75 (75)
T ss_pred             EEEECCCChhhCEEEEEEEEcCcCeE-EEEEEEeC
Confidence            68889999999999999999999988 77888876

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.13  E-value=1.4e-10  Score=60.60  Aligned_cols=38  Identities=37%  Similarity=0.531  Sum_probs=34.1

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+..+.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        38 ~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~   75 (75)
T cd05763          38 EDDVFFIVDVKIEDTGVYSCTAQNTAGSI-SANATLTVL   75 (75)
T ss_pred             CCCEEEEeeCCcccCEEEEEEEEcCCCEE-EeeEEEEEC
Confidence            35578889999999999999999999987 889999986

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.13  E-value=2e-10  Score=59.29  Aligned_cols=36  Identities=25%  Similarity=0.482  Sum_probs=31.5

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...+.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        36 ~~~l~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~L~V   71 (71)
T cd05723          36 EHNLQVLGLVKSDEGFYQCIAENDVGNV-QASAQLII   71 (71)
T ss_pred             cCCEEEEcCCcccCEEEEEEEEcCCCEE-EEEEEEEC
Confidence            4567888999999999999999999988 77888775

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.12  E-value=1.9e-10  Score=59.41  Aligned_cols=37  Identities=30%  Similarity=0.475  Sum_probs=33.2

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        34 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05876          34 NNKTLQLDNVLESDDGEYVCTAENSEGSA-RHHYTVTV   70 (71)
T ss_pred             CCCEEEEcccCHHhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence            45688999999999999999999999988 77888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.12  E-value=1.5e-10  Score=59.50  Aligned_cols=38  Identities=26%  Similarity=0.372  Sum_probs=30.2

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      .+..|.+.++..+|+|.|+|.|.|..|.. .+.+++|.|
T Consensus        32 ~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~v   70 (70)
T cd05864          32 RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLVV   70 (70)
T ss_pred             cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEEC
Confidence            35678999999999999999999999977 344455543

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.12  E-value=2.7e-10  Score=59.59  Aligned_cols=37  Identities=27%  Similarity=0.454  Sum_probs=33.4

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. ..++.|.|.
T Consensus        40 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   76 (76)
T cd05867          40 SGALILTDVQPSDTAVYQCEARNRHGNL-LANAHVHVV   76 (76)
T ss_pred             CCEEEECCCChhhCEEEEEEEECCCCeE-EEEEEEEEC
Confidence            4578999999999999999999999988 778998884

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.12  E-value=1.6e-10  Score=59.68  Aligned_cols=37  Identities=27%  Similarity=0.420  Sum_probs=30.8

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|.. +..+++.|
T Consensus        33 ~~~~L~I~~v~~~D~G~YtC~a~N~~g~~-~~~~~~~~   69 (71)
T cd04976          33 SGHSLTIKDVTEEDAGNYTVVLTNKQAKL-EKRLTFTL   69 (71)
T ss_pred             CCCEEEECcCCHHHCEEEEEEEEcCCccE-EEEEEEEE
Confidence            45678999999999999999999999976 55555554

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.12  E-value=2.3e-10  Score=61.84  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=33.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...+.|.+++.+|+|.|+|.|.|..|.. +.++.|.|+
T Consensus        54 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~sa~L~V~   90 (90)
T cd04974          54 SEVLYLRNVSFDDAGEYTCLAGNSIGPS-HHSAWLTVL   90 (90)
T ss_pred             cceEEEeccccccCcEEEEEeecccCcc-cCCEEEEeC
Confidence            3468889999999999999999999998 889999885

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.11  E-value=2.1e-10  Score=59.99  Aligned_cols=39  Identities=28%  Similarity=0.484  Sum_probs=34.9

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        38 ~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~   76 (76)
T cd04978          38 VDGGTLILSNVQPNDTAVYQCNASNVHGYL-LANAFVHVV   76 (76)
T ss_pred             ccCCEEEECCCChhhCEEEEEEEEccCCeE-EEeEEEEEC
Confidence            446778999999999999999999999988 889999885

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.10  E-value=3e-10  Score=61.13  Aligned_cols=38  Identities=21%  Similarity=0.381  Sum_probs=33.7

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        51 ~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~   88 (88)
T cd05851          51 SGAVLKIFNIQPEDEGTYECEAENIKGKD-KHQARVYVQ   88 (88)
T ss_pred             CCCEEEECcCChhhCEEEEEEEEcCCCce-EEEEEEEEC
Confidence            45678999999999999999999999988 888888874

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.10  E-value=1.1e-09  Score=59.38  Aligned_cols=68  Identities=19%  Similarity=0.326  Sum_probs=52.6

Q ss_pred             ceEEeeCCeEEEEEee-cCCCCCceEEEecCCCC--CCCc--eee-eccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSL--PSGE--KSL-EGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~--~~~~--~~~-~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      ...+..|+.+.|.|.. .+.|.+.+.|++++..+  ..+.  ... ..+.|.|.++...|+|.|.|.+.+....
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCCcEEEeecCHhhCceeEEEEEecccC
Confidence            3478899999999974 56788999999997653  1111  122 3678999999999999999999986543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.09  E-value=3.8e-09  Score=56.07  Aligned_cols=64  Identities=17%  Similarity=0.356  Sum_probs=51.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      +..+..|+++.|+|...+ +...+.|++++..+..+.. ......+.|..+...|+|.|.|.+...
T Consensus         5 ~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~GLlI~~~~~~dsG~Y~C~s~E~   69 (85)
T cd05872           5 NRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDGLLILVTSPEHSGTYRCYSEEE   69 (85)
T ss_pred             EEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCCCEEEECCHhhCEEEEEEEecC
Confidence            457889999999999877 5669999999988764333 334556789999999999999998643

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.09  E-value=2.9e-10  Score=62.39  Aligned_cols=37  Identities=19%  Similarity=0.396  Sum_probs=33.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.+.++..+|+|.|+|.|.|.+|.. ...++|.|+
T Consensus        55 ~s~L~I~~~~~~D~G~Ytc~a~N~~G~~-~~~~~l~V~   91 (98)
T cd05762          55 SSKLTITEGQQEHCGCYTLEVENKLGSR-QAQVNLTVV   91 (98)
T ss_pred             eeEEEECCCChhhCEEEEEEEEcCCCce-eEEEEEEEe
Confidence            4568889999999999999999999998 778988874

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.09  E-value=2.9e-10  Score=59.16  Aligned_cols=36  Identities=22%  Similarity=0.481  Sum_probs=31.9

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        39 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   74 (74)
T cd05748          39 STSLVIKNAERSDSGKYTLTLKNPAGEK-SATINVKV   74 (74)
T ss_pred             eEEEEECCCCcCcCEEEEEEEECCCccE-EEEEEEEC
Confidence            4568889999999999999999999988 88888876

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.08  E-value=1.7e-09  Score=54.02  Aligned_cols=61  Identities=38%  Similarity=0.770  Sum_probs=47.7

Q ss_pred             eCCeEEEEEeecCCCCCceEEEecCCCCCCCc-eeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        24 ~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .|+.+.|.|...+.+.+.+.|++++..+.... .......|.|.++...|+|.|.|.+.+..
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~   62 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRLSASGSTLTIKSVSLEDSGEYTCVAENSA   62 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEEecCCcEEEEeeCCcccCEEEEEEEecCC
Confidence            37889999998777888999999877665211 12345579999999999999999997754

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.08  E-value=2.2e-10  Score=59.68  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=30.8

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        42 ~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V   75 (75)
T cd05893          42 CLLIQGATKEDAGWYTVSAKNEAGIV-SCTARLDV   75 (75)
T ss_pred             EEEECCCCHHHCEEEEEEEEcCCCEE-EEEEEEeC
Confidence            47889999999999999999999988 77888876

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.07  E-value=3.3e-10  Score=61.29  Aligned_cols=38  Identities=32%  Similarity=0.546  Sum_probs=34.5

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..|.|.+++.+|+|.|.|.|.|..|...+..+.|.|
T Consensus        53 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          53 DNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYILNV   90 (91)
T ss_pred             CCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence            45679999999999999999999999988788899887

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.07  E-value=5.1e-10  Score=61.64  Aligned_cols=36  Identities=22%  Similarity=0.336  Sum_probs=32.2

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus        65 ~~L~i~~v~~~D~G~Ytc~A~N~~G~~-~~t~~L~V~  100 (101)
T cd04975          65 SELKLVRLKESEAGTYTFLASNSDASK-SLTFELYVN  100 (101)
T ss_pred             EEEEEeecCHhhCeeEEEEEECCCccE-EEEEEEEEE
Confidence            568889999999999999999999987 888888773

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.06  E-value=4.2e-10  Score=60.26  Aligned_cols=35  Identities=34%  Similarity=0.551  Sum_probs=31.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.+.++..+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        52 ~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~~l~V   86 (86)
T cd05894          52 SSFVIEGAEREDEGVYTITVTNPVGED-HASLFVKV   86 (86)
T ss_pred             EEEEECCCccCcCEEEEEEEEeCCCcE-EEEEEEEC
Confidence            468889999999999999999999988 77888876

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.06  E-value=4.5e-10  Score=58.90  Aligned_cols=33  Identities=18%  Similarity=0.399  Sum_probs=28.9

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE  145 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~  145 (147)
                      .|.+.++..+|+|.|+|.|.|.+|.. +.++.+.
T Consensus        45 ~L~i~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~   77 (79)
T cd05855          45 CLQLDNPTHLNNGIYTLVAKNEYGED-EKNVSAH   77 (79)
T ss_pred             EEEECCCCcccCEEEEEEEEcCCccc-ceEEEee
Confidence            57788999999999999999999988 7777664

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.06  E-value=8.4e-10  Score=57.88  Aligned_cols=38  Identities=26%  Similarity=0.542  Sum_probs=32.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V~  147 (147)
                      +..|.+.+++.+|+|.|+|.|.|.+|.. .+..++|.|+
T Consensus        37 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760          37 ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            4578899999999999999999999976 3567888774

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.05  E-value=1.1e-08  Score=55.38  Aligned_cols=75  Identities=24%  Similarity=0.370  Sum_probs=51.4

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCC--CC----C-CCceeeeccceEEEeecCCCCeEEEEEeec-CCCCceEEe
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDS--SL----P-SGEKSLEGFSITLEKVDRHQAGVYQCTATN-GVGDPVTVD   91 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~----~-~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~-~~~~~~~~~   91 (147)
                      +....|+.+.|.|.. +.|.+.+.|++...  ..    . ..........|.|.++...|+|.|.|.+.+ ..+.. ...
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~~~   83 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTERGLLLRSLQRSDAGVYTCTAVEHSFSQT-LAK   83 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecCeEEEeeCChhHCEEEEEEEEccCCeEE-EEE
Confidence            457789999999986 46888999998432  11    1 112223445699999999999999999974 43332 344


Q ss_pred             EEEEE
Q psy7616          92 MTLEV   96 (147)
Q Consensus        92 ~~l~v   96 (147)
                      ..|.|
T Consensus        84 ~~l~v   88 (91)
T cd05871          84 YTLHV   88 (91)
T ss_pred             EEEEE
Confidence            44544

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.05  E-value=6.9e-09  Score=56.63  Aligned_cols=68  Identities=28%  Similarity=0.495  Sum_probs=49.3

Q ss_pred             CCceEEeeCCeEEEEEeecCCCCCceEEEecCCC---------CCCCce-e----eeccceEEEeecCCCCeEEEEEeec
Q psy7616          17 NGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS---------LPSGEK-S----LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        17 ~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~---------~~~~~~-~----~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      ++.+.+..|+.+.|.|.+.+.+.+.+.|++.++.         ...... .    .....|.|.+++..|+|.|.|.+..
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   83 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYT   83 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEec
Confidence            3467889999999999988777788999863321         111111 1    1234689999999999999999887


Q ss_pred             CC
Q psy7616          83 GV   84 (147)
Q Consensus        83 ~~   84 (147)
                      ..
T Consensus        84 ~~   85 (95)
T cd05717          84 MP   85 (95)
T ss_pred             CC
Confidence            54

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.05  E-value=7.2e-10  Score=57.69  Aligned_cols=38  Identities=26%  Similarity=0.478  Sum_probs=33.1

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .++.|.+.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        36 ~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738          36 RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            34568889999999999999999999987788888876

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.05  E-value=5.9e-10  Score=61.42  Aligned_cols=36  Identities=17%  Similarity=0.301  Sum_probs=32.2

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus        65 s~L~I~~v~~~D~G~Ytc~A~N~~g~~-~~t~~l~V~  100 (101)
T cd05859          65 SKLKLIRAKEEDSGLYTALAQNEDAVK-SYTFALQIQ  100 (101)
T ss_pred             cEEEEeeCCHHHCEEEEEEEEcCCceE-EEEEEEEEE
Confidence            468899999999999999999999988 888888773

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.05  E-value=1e-09  Score=59.03  Aligned_cols=38  Identities=24%  Similarity=0.396  Sum_probs=34.1

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        51 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   88 (88)
T cd04968          51 SGAVLKIPNIQFEDEGTYECEAENIKGKD-THQGRIYVQ   88 (88)
T ss_pred             eCCEEEECCCCcccCEEEEEEEEECCCcE-EEEEEEEEC
Confidence            46788999999999999999999999998 888888874

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.05  E-value=2.7e-10  Score=58.50  Aligned_cols=37  Identities=30%  Similarity=0.495  Sum_probs=32.7

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        33 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   69 (69)
T cd05725          33 DDKSLKIRNVTAGDEGSYTCEAENMVGKI-EASASLTV   69 (69)
T ss_pred             eCCEEEECcCChhHCEEEEEEEEcCCCcE-EEEEEEEC
Confidence            45679999999999999999999999988 77888775

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.04  E-value=4.7e-10  Score=57.86  Aligned_cols=36  Identities=25%  Similarity=0.605  Sum_probs=32.3

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        35 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   70 (71)
T cd05731          35 NKTLKIDNVSEEDDGEYRCTASNSLGSA-RHTISVTV   70 (71)
T ss_pred             CCEEEECCCCHHHCEEEEEEEEeCCceE-EEEEEEEE
Confidence            4578899999999999999999999988 77888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.03  E-value=5.9e-10  Score=58.16  Aligned_cols=34  Identities=24%  Similarity=0.483  Sum_probs=30.9

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        42 ~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v   75 (75)
T cd05744          42 CLLIQNANKEDAGWYTVSAVNEAGVV-SCNARLDV   75 (75)
T ss_pred             EEEECCCCcccCEEEEEEEEcCCCcE-EEEEEEeC
Confidence            58889999999999999999999988 77888875

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.02  E-value=9.3e-10  Score=59.72  Aligned_cols=34  Identities=35%  Similarity=0.542  Sum_probs=30.8

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        59 ~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v   92 (92)
T cd05737          59 SLTIKGVSSEDSGKYGIVVKNKYGGE-TVDVTVSV   92 (92)
T ss_pred             EEEEccCChhhCEEEEEEEEECCCcc-eEEEEEeC
Confidence            68889999999999999999999988 77888775

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.02  E-value=8.8e-10  Score=60.17  Aligned_cols=38  Identities=29%  Similarity=0.606  Sum_probs=33.7

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+..|.+.+++.+|.|.|+|.|.|..|.. +..+.|.|+
T Consensus        56 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V~   93 (95)
T cd05730          56 DGSEMTILDVDKLDEAEYTCIAENKAGEQ-EAEIHLKVF   93 (95)
T ss_pred             CCCEEEECCCChhhCEEEEEEEEcCCCeE-EEEEEEEEE
Confidence            35568999999999999999999999988 888888874

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.01  E-value=5.4e-10  Score=57.35  Aligned_cols=34  Identities=29%  Similarity=0.511  Sum_probs=30.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +.++.|
T Consensus        35 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L   68 (69)
T cd05746          35 EGYLAIRDVGVADQGRYECVARNTIGYA-SVSMVL   68 (69)
T ss_pred             CCEEEECcCChhhCEEEEEEEECCCCcE-EEEEEe
Confidence            5578999999999999999999999988 767665

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.01  E-value=5.4e-09  Score=55.96  Aligned_cols=71  Identities=21%  Similarity=0.310  Sum_probs=49.7

Q ss_pred             CCeEEEEEeecCCC--CCceEEEecCCCCCCC---c----e----eeeccceEEEeecCCCCeEEEEEeecCCCCceEEe
Q psy7616          25 GGTITLECKASGNP--VPSIIWSKKDSSLPSG---E----K----SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD   91 (147)
Q Consensus        25 g~~~~l~C~~~~~~--~~~v~w~~~~~~~~~~---~----~----~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   91 (147)
                      |+++.|.|.+.+.+  ...+.|...+......   .    .    ....+.|.|.+++..|+|.|.|.+.+..+.. ...
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA-KNS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe-ccc
Confidence            68899999987644  4568998877543110   0    0    1234579999999999999999999876553 455


Q ss_pred             EEEEE
Q psy7616          92 MTLEV   96 (147)
Q Consensus        92 ~~l~v   96 (147)
                      +.+.|
T Consensus        80 t~~~V   84 (86)
T cd05862          80 TIVIV   84 (86)
T ss_pred             EEEEE
Confidence            55544

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.00  E-value=2.6e-09  Score=53.91  Aligned_cols=56  Identities=34%  Similarity=0.767  Sum_probs=43.3

Q ss_pred             CCeEEEEEee-cCCCCCceEEEecCCCCCCCceee---ecc----ceEEEeecCCCCeEEEEEe
Q psy7616          25 GGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKSL---EGF----SITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus        25 g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~~~---~~~----~l~~~~~~~~~~g~y~C~~   80 (147)
                      |+.+.|.|.+ .+.+...+.|.+++..........   ...    .|.|.+++..|+|.|.|.+
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999998 666778899999988765433211   111    2999999999999999975

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.00  E-value=4e-09  Score=57.11  Aligned_cols=67  Identities=18%  Similarity=0.278  Sum_probs=52.7

Q ss_pred             ceEEeeCCeEEEEEe-ecCCCCCceEEEecCCCC-CCCc--eeeeccceEEEeecCCCCe-EEEEEeecCCC
Q psy7616          19 QLTVRKGGTITLECK-ASGNPVPSIIWSKKDSSL-PSGE--KSLEGFSITLEKVDRHQAG-VYQCTATNGVG   85 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~-~~~~~~~~v~w~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~g-~y~C~~~~~~~   85 (147)
                      .+.+.+|+.+.|.|. ..+.|.|.+.|++++... ....  .....+.|.|.++...|+| .|.|.+.+...
T Consensus        12 ~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~   83 (95)
T cd05845          12 PVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNGNLYFANVEEQDSHPDYICHAHFPGL   83 (95)
T ss_pred             eeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCceEEEEEEehhhCCCCeEEEEEcccc
Confidence            568899999999997 688899999999876442 2111  2334578999999999999 79999988653

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.99  E-value=9.6e-10  Score=57.20  Aligned_cols=37  Identities=19%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+.|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        38 ~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v   74 (74)
T cd05764          38 DNGTLDILITTVKDTGSFTCIASNAAGEA-TATVELHI   74 (74)
T ss_pred             cCCEEEEEECChhhCEEEEEEEECCCCeE-EEEEEEEC
Confidence            34578899999999999999999999988 87888875

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.99  E-value=1.3e-08  Score=55.59  Aligned_cols=68  Identities=21%  Similarity=0.312  Sum_probs=50.0

Q ss_pred             ceEEeeCCeEEEEEeec-----------CCCCCceEEEecCCCCCCC--------ceeeeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKAS-----------GNPVPSIIWSKKDSSLPSG--------EKSLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~-----------~~~~~~v~w~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|+++.|.|..-           ......+.|+|++..+...        +-......|.|.++..+|+|.|.|.
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~   88 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCV   88 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEE
Confidence            45788999999999851           1123479999996444221        2234677899999999999999999


Q ss_pred             eecCCCC
Q psy7616          80 ATNGVGD   86 (147)
Q Consensus        80 ~~~~~~~   86 (147)
                      +.|....
T Consensus        89 ~rN~t~C   95 (104)
T cd05896          89 LRNSTYC   95 (104)
T ss_pred             ECCCCcc
Confidence            9887644

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.98  E-value=1.3e-09  Score=58.24  Aligned_cols=38  Identities=29%  Similarity=0.476  Sum_probs=33.3

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+..|.+.+++.+|+|.|+|.|.|..|.. ..++.|+|
T Consensus        48 ~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   85 (85)
T cd05728          48 VEAGDLRITKLSLSDSGMYQCVAENKHGTI-YASAELAV   85 (85)
T ss_pred             EeCCEEEEeeCCHHHCEEEEEEEECCCCeE-EEEEEEEC
Confidence            345679999999999999999999999988 77888875

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.98  E-value=1.6e-09  Score=57.27  Aligned_cols=33  Identities=15%  Similarity=0.329  Sum_probs=28.6

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE  145 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~  145 (147)
                      .|.+.+++.+|+|.|+|.|.|.+|.. +..+++.
T Consensus        47 ~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~~~   79 (81)
T cd04971          47 CLQFDNPTHVNNGNYTLVASNEYGQD-SKSISAH   79 (81)
T ss_pred             EEEECCCCcccCeEEEEEEEeCCCCe-eeEEEee
Confidence            58889999999999999999999988 6666654

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=98.98  E-value=2.2e-09  Score=56.87  Aligned_cols=36  Identities=19%  Similarity=0.571  Sum_probs=31.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +..+.|+|
T Consensus        47 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~v~v   82 (82)
T cd05856          47 KWTLSLKNLKPEDSGKYTCHVSNRAGEI-NATYKVDV   82 (82)
T ss_pred             eEEEEEccCChhhCEEEEEEEEcCCccE-EEEEEEeC
Confidence            3568889999999999999999999987 77888875

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.98  E-value=1.6e-09  Score=58.23  Aligned_cols=36  Identities=22%  Similarity=0.397  Sum_probs=31.8

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.++..+|+|.|+|.|.|.+|.. +..+.|.|.
T Consensus        47 s~L~I~~~~~~D~G~YtC~A~N~~G~~-~~~~~L~V~   82 (88)
T cd05735          47 STLQILPTVREDSGFFSCHAINSYGED-RGIIQLTVQ   82 (88)
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCcc-eEEEEEEEe
Confidence            357778999999999999999999988 888888874

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.97  E-value=2e-08  Score=54.82  Aligned_cols=74  Identities=24%  Similarity=0.382  Sum_probs=54.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCC---cee--e------eccceEEEeecCCC-CeEEEEEeecCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSG---EKS--L------EGFSITLEKVDRHQ-AGVYQCTATNGVG   85 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~---~~~--~------~~~~l~~~~~~~~~-~g~y~C~~~~~~~   85 (147)
                      ...+..|+.+.|.|.+.+.|.| .+.|..++..+...   ...  .      ..+.|.|.++...| .|.|.|.+.|..|
T Consensus        10 s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G   89 (98)
T cd05898          10 VQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFG   89 (98)
T ss_pred             eEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCc
Confidence            4478899999999999887876 47888877655322   111  1      34478999998767 6899999999998


Q ss_pred             CceEEeEE
Q psy7616          86 DPVTVDMT   93 (147)
Q Consensus        86 ~~~~~~~~   93 (147)
                      .. ...+.
T Consensus        90 ~d-~~~i~   96 (98)
T cd05898          90 SG-TAIIQ   96 (98)
T ss_pred             cc-eEEEE
Confidence            86 44443

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.96  E-value=1.4e-08  Score=63.87  Aligned_cols=65  Identities=12%  Similarity=0.331  Sum_probs=50.7

Q ss_pred             ceEEeeCCeEEEEEeecC-----CCCCceEEEecCCCCCCCceee---eccceEEEeecCCCCeEEEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASG-----NPVPSIIWSKKDSSLPSGEKSL---EGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-----~~~~~v~w~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      ...+..|+.+.|.|.+.+     .|.|.+.|++++..+....+..   ....|.|.+++..|+|.|+|.+...
T Consensus       138 ~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~~~~~L~I~~V~~~DsG~YtC~a~~~  210 (227)
T PHA02826        138 NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRNNNSTLVIKSATHDDSGIYTCNLRFN  210 (227)
T ss_pred             cceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeCCCCEEEECcCCHHhCEEEEEEEEEe
Confidence            346678999999998753     3568899999998875433322   3457999999999999999999764

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.95  E-value=1.2e-08  Score=55.25  Aligned_cols=72  Identities=22%  Similarity=0.404  Sum_probs=52.9

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      +|.+...|..   .+..|++++|.|... .+...+.|++++........  ......+.|.+++..|+|.|+|...+.
T Consensus         2 kP~L~a~p~~---vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           2 KPSLWAEPSS---VVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKPPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CCEEEecCCC---ccCCCCcEEEEEecC-CCCCEEEEEECCCCccccccCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            4566666642   688999999999875 46778999998865432111  123446888999999999999998875

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=98.95  E-value=1.1e-09  Score=59.22  Aligned_cols=36  Identities=33%  Similarity=0.417  Sum_probs=33.4

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|+
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~a~L~V~   90 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGIS-HHSAWLTVL   90 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcc-cceEEEEEC
Confidence            468999999999999999999999988 889999986

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=98.93  E-value=3.7e-09  Score=58.03  Aligned_cols=35  Identities=26%  Similarity=0.546  Sum_probs=31.7

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.|.+++.+|+|.|+|.|.|.+|.. +.++.|+|
T Consensus        64 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~~   98 (98)
T cd05870          64 SSLHIKDVKLSDSGRYDCEAASRIGGH-QKSMYLDI   98 (98)
T ss_pred             eEEEEeeCCcCCCEEEEEEEeccCCcc-eeEEEEeC
Confidence            478999999999999999999999988 77888875

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=98.93  E-value=3.7e-09  Score=57.12  Aligned_cols=36  Identities=25%  Similarity=0.473  Sum_probs=31.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...|.+.+++.+|.|.|+|.|.|..|.. +..++|+|
T Consensus        55 ~~~L~I~~v~~~D~g~Y~C~A~N~~G~~-~~~~~L~v   90 (90)
T cd04972          55 IYNLQLSNITSETQTTVTCTAENPVGQA-NVSVQVTV   90 (90)
T ss_pred             EEEEEEecCCcccCEEEEEEEECCCCce-eEEEEEeC
Confidence            3468889999999999999999999988 77888875

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=98.92  E-value=2.3e-09  Score=56.69  Aligned_cols=36  Identities=28%  Similarity=0.407  Sum_probs=32.5

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v   81 (81)
T cd05765          46 IGQLVIYNAQPQDAGLYTCTARNSGGLL-RANFPLSV   81 (81)
T ss_pred             ccEEEEccCCcccCEEEEEEEecCCceE-EEEEEEeC
Confidence            3578899999999999999999999987 88888876

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>smart00409 IG Immunoglobulin

Probab=98.92  E-value=9.6e-08  Score=50.43  Aligned_cols=76  Identities=32%  Similarity=0.629  Sum_probs=55.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEec-CCCCCCC-ce-eee---ccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPSG-EK-SLE---GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~-~~~~~~~-~~-~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+... .. ...   ...|.+.++...|.|.|.|.+.+..+.. ...+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~   81 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA-SSTT   81 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-EEEE
Confidence            45778999999999998877788999998 5554311 11 112   2468899999999999999999766554 3334


Q ss_pred             EEE
Q psy7616          93 TLE   95 (147)
Q Consensus        93 ~l~   95 (147)
                      .+.
T Consensus        82 ~l~   84 (86)
T smart00409       82 TLT   84 (86)
T ss_pred             EEE
Confidence            443

>smart00410 IG_like Immunoglobulin like

Probab=98.92  E-value=9.6e-08  Score=50.43  Aligned_cols=76  Identities=32%  Similarity=0.629  Sum_probs=55.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEec-CCCCCCC-ce-eee---ccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPSG-EK-SLE---GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~-~~~~~~~-~~-~~~---~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      ...+..|+++.|.|.+.+.+.+.+.|+++ +..+... .. ...   ...|.+.++...|.|.|.|.+.+..+.. ...+
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~   81 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSA-SSTT   81 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeE-EEEE
Confidence            45778999999999998877788999998 5554311 11 112   2468899999999999999999766554 3334


Q ss_pred             EEE
Q psy7616          93 TLE   95 (147)
Q Consensus        93 ~l~   95 (147)
                      .+.
T Consensus        82 ~l~   84 (86)
T smart00410       82 TLT   84 (86)
T ss_pred             EEE
Confidence            443

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=98.92  E-value=1.9e-09  Score=58.39  Aligned_cols=37  Identities=27%  Similarity=0.556  Sum_probs=33.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.....++.|.|+
T Consensus        56 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~l~~~   92 (92)
T cd05866          56 SRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIY   92 (92)
T ss_pred             eEEEEecCChHHCEEEEEEEEcCCCcEEEEEEEEEEC
Confidence            3789999999999999999999999877888998875

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=98.91  E-value=4.9e-09  Score=57.43  Aligned_cols=35  Identities=43%  Similarity=0.651  Sum_probs=31.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        63 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v   97 (97)
T cd05869          63 SSLTLKYIQYTDAGEYLCTASNTIGQD-SQSMYLEV   97 (97)
T ss_pred             EEEEEecCccCcCEEEEEEEecCCCCe-eEEEEEEC
Confidence            468889999999999999999999988 88888876

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.91  E-value=7.2e-09  Score=56.22  Aligned_cols=66  Identities=17%  Similarity=0.382  Sum_probs=48.1

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCC-CC-------------Cce--------eeeccceEEEeecCCCCeEEEE
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSL-PS-------------GEK--------SLEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~-~~-------------~~~--------~~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+..|+.++|+|...+.+.+.+.|++.+... ..             ..+        ......|.|.+++.+|+|.|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            5678999999999988888899999654321 00             000        1122359999999999999999


Q ss_pred             EeecCCCC
Q psy7616          79 TATNGVGD   86 (147)
Q Consensus        79 ~~~~~~~~   86 (147)
                      .+.+..++
T Consensus        83 ~v~~~~~~   90 (94)
T cd07690          83 EVEDKKEE   90 (94)
T ss_pred             EECCccce
Confidence            99886543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=98.90  E-value=2.3e-09  Score=57.04  Aligned_cols=38  Identities=18%  Similarity=0.312  Sum_probs=33.6

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+.|.+.+++..|+|+|+|.|+|..+.. +.++.|.|.
T Consensus        45 ~~~~L~I~nv~~~dsG~YtC~a~n~~~~~-~a~a~L~V~   82 (85)
T cd05853          45 SAGDLMIRSIQLKHAGKYVCMVQTSVDKL-SAAADLIVR   82 (85)
T ss_pred             CCCcEEEecCCHHHCEEEEEEEEcccCce-EEEEEEEEe
Confidence            34579999999999999999999999988 888888773

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=98.90  E-value=4.3e-09  Score=55.44  Aligned_cols=37  Identities=19%  Similarity=0.474  Sum_probs=32.3

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|+|
T Consensus        43 ~~~~L~I~~~~~~DsG~Y~C~a~n~~g~~-~~~~~v~V   79 (79)
T cd04973          43 TGEEVQIKDAVPRDSGLYACVTSSPSGSD-TTYFSVNV   79 (79)
T ss_pred             eCCEEEECCCChhhCEEEEEEEeCCCCcc-cEEEEEeC
Confidence            35678999999999999999999999987 77888776

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=98.90  E-value=2.5e-09  Score=57.13  Aligned_cols=37  Identities=27%  Similarity=0.335  Sum_probs=33.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus        46 ~~~L~I~~v~~~D~G~YtC~A~n~~g~~-~~~~~L~V~   82 (85)
T cd05854          46 IGDLVIVNAQLSHAGTYTCTAQTVVDSA-SASATLVVR   82 (85)
T ss_pred             EeEEEEccCChhhCeEEEEEEecCCCCE-EEEEEEEEE
Confidence            3578999999999999999999999988 888888874

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=98.89  E-value=2.9e-09  Score=56.89  Aligned_cols=35  Identities=29%  Similarity=0.502  Sum_probs=31.2

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+.+.+++.+|+|.|+|.|.|..|.. +.++.|+|
T Consensus        51 ~~l~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~v   85 (85)
T cd05857          51 WSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDV   85 (85)
T ss_pred             eEEEEccCCcccCEEEEEEEEeCCCEE-EEEEEEEC
Confidence            457788999999999999999999988 88888876

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=98.89  E-value=3.6e-09  Score=57.75  Aligned_cols=36  Identities=19%  Similarity=0.562  Sum_probs=31.9

Q ss_pred             CceEEeecCCCCCeEEEEEeecCC-CCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGV-GDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~-g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|.. |.. +.++.|.|+
T Consensus        60 ~~L~I~~v~~~D~G~YtC~A~N~~~g~~-~~s~~l~v~   96 (96)
T cd05865          60 STLTIYNANIDDAGIYKCVVSNEDEGES-EATVNVKIF   96 (96)
T ss_pred             eEEEEeccChhhCEEEEEEEEcCCCCcE-EEEEEEEEC
Confidence            568899999999999999999998 655 888999886

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=98.89  E-value=5.2e-09  Score=55.11  Aligned_cols=38  Identities=29%  Similarity=0.490  Sum_probs=33.7

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ....|.+.+++.+|+|.|+|.|.|..|...+..+.|+|
T Consensus        42 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734          42 SNGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             cCCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            34678899999999999999999999988888888876

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=98.88  E-value=8.9e-09  Score=53.79  Aligned_cols=36  Identities=28%  Similarity=0.411  Sum_probs=31.9

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +..+.+.+++.+|.|.|+|.|.|..|.. +..+.|.|
T Consensus        38 ~~~l~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   73 (76)
T cd05736          38 GSELHISNVRYEDTGAYTCIAKNEAGVD-EDISSLFV   73 (76)
T ss_pred             CCEEEECcCCcccCEEEEEEEEcCCCCc-ceEEEEEE
Confidence            4468889999999999999999999988 77888876

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.87  E-value=5e-09  Score=56.04  Aligned_cols=37  Identities=27%  Similarity=0.496  Sum_probs=32.8

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +..|.+.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        50 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~l~V   86 (86)
T cd05724          50 DGNLLIAEARKSDEGTYKCVATNMVGERESAAARLSV   86 (86)
T ss_pred             CCEEEEeECCcccCEEEEEEEEeccCceeeeeEEEEC
Confidence            4679999999999999999999999988777787765

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=98.86  E-value=1e-08  Score=55.62  Aligned_cols=34  Identities=35%  Similarity=0.554  Sum_probs=30.4

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        59 ~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~~   92 (92)
T cd05891          59 SLTIKGVTSEDSGKYSINVKNKYGGE-TVDVTVSV   92 (92)
T ss_pred             EEEECCCChhhCEEEEEEEEeCCCce-eeEEEEEC
Confidence            68889999999999999999999988 77777765

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=98.85  E-value=4.6e-09  Score=54.14  Aligned_cols=37  Identities=24%  Similarity=0.353  Sum_probs=28.5

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCC-CCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGV-GDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~-g~~~~~~~~l~V  146 (147)
                      +..|.+.+++.+|+|.|+|.|.|.. |......++|.|
T Consensus        35 ~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~~~~   72 (72)
T cd07702          35 GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTITLIV   72 (72)
T ss_pred             CCEEEECcCCHHHCEEEEEEEEccccceEeeEEEEEEC
Confidence            4578899999999999999999995 444455555543

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=98.85  E-value=1.1e-08  Score=55.89  Aligned_cols=35  Identities=43%  Similarity=0.652  Sum_probs=31.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.|.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        62 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~s~~l~v   96 (96)
T cd05732          62 SSLTLKDVQLTDAGRYDCEASNRIGGD-QQSMYLEV   96 (96)
T ss_pred             EEEEECcCCcCcCEEeEEEEEeCCCCc-EEEEEEeC
Confidence            468889999999999999999999988 88888875

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.84  E-value=5e-08  Score=52.96  Aligned_cols=66  Identities=15%  Similarity=0.213  Sum_probs=49.3

Q ss_pred             EEeeCCeEEEEEee-c----CCCCCceEEEecCCCCCCCce--e--eeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKA-S----GNPVPSIIWSKKDSSLPSGEK--S--LEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        21 ~~~~g~~~~l~C~~-~----~~~~~~v~w~~~~~~~~~~~~--~--~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      .+..|.+..|.|.- .    ..+.+.+.|++++.++.....  .  .+...|.|.++...|+|.|+|.+.+..+.
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g   80 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEG   80 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCC
Confidence            56678899999972 2    335678999999987753221  1  23457999999999999999999886544

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.84  E-value=2.8e-07  Score=51.27  Aligned_cols=36  Identities=25%  Similarity=0.532  Sum_probs=30.8

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+|.|.+++.+|+|.|+|.+.+..+.. ...+.|.|
T Consensus        67 ~~sL~I~~v~~sD~G~Y~C~v~~~~~~~-~~~v~L~V  102 (106)
T cd05714          67 DASLVITDLRLEDSGRYRCEVIDGIEDE-QDTVELEV  102 (106)
T ss_pred             cceEEECCCCHHHCEEEEEEEEcCCCce-EEEEEEEE
Confidence            4578899999999999999999987765 77787776

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=98.83  E-value=5.3e-09  Score=55.87  Aligned_cols=37  Identities=24%  Similarity=0.333  Sum_probs=33.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|.
T Consensus        46 ~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~   82 (85)
T cd04970          46 NGDLMIRNAQLKHAGKYTCTAQTVVDSL-SASADLIVR   82 (85)
T ss_pred             cceEEEccCCHHhCeeeEEEEecCCCcE-EEEEEEEEE
Confidence            4579999999999999999999999988 778888873

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.83  E-value=4e-07  Score=51.39  Aligned_cols=38  Identities=24%  Similarity=0.336  Sum_probs=29.2

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      ...++.|.+++.+|.|.|+|.+.|.-+.. ....+.|.|
T Consensus        78 ~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v  116 (116)
T cd05879          78 KDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV  116 (116)
T ss_pred             CeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence            34578899999999999999999997654 344455543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=98.82  E-value=1.1e-08  Score=55.32  Aligned_cols=37  Identities=30%  Similarity=0.419  Sum_probs=33.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|.
T Consensus        46 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   82 (90)
T cd05726          46 TGDLTITNVQRSDVGYYICQTLNVAGSI-LTKAYLEVT   82 (90)
T ss_pred             CCeEEEeeCChhhCEEEEEEEEcCCCce-EEEEEEEEe
Confidence            4579999999999999999999999988 778888873

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.80  E-value=1.5e-07  Score=52.09  Aligned_cols=66  Identities=17%  Similarity=0.246  Sum_probs=47.9

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCC---------------------CceeeeccceEEEeecCCCCeEEEEE
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPS---------------------GEKSLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+..|+++.|.|.........+.|+++......                     ......+.+|.|++++..|+|.|.|.
T Consensus         9 ~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~~~D~G~Y~~~   88 (105)
T cd05774           9 QVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVTQKDTGFYTLQ   88 (105)
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCCcccCEEEEEE
Confidence            678999999999765445557999996432110                     01123456899999999999999999


Q ss_pred             eecCCCC
Q psy7616          80 ATNGVGD   86 (147)
Q Consensus        80 ~~~~~~~   86 (147)
                      +.+....
T Consensus        89 v~~~~~~   95 (105)
T cd05774          89 TITTNFQ   95 (105)
T ss_pred             EEeCCcc
Confidence            9886543

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.80  E-value=2.8e-07  Score=50.26  Aligned_cols=77  Identities=17%  Similarity=0.296  Sum_probs=59.9

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCc-eEEEecCCCCCCCce----------eeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          19 QLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~-v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      ...+..|+.+.|.|...+.|.|. +.|.+++..+.....          ....+.|.+..++..+.|.|+|.+.|.....
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            45788999999999999999997 999998765522111          1134578999999999999999999987664


Q ss_pred             eEEeEEEEE
Q psy7616          88 VTVDMTLEV   96 (147)
Q Consensus        88 ~~~~~~l~v   96 (147)
                       +..+.|.+
T Consensus        92 -s~tF~l~v   99 (101)
T cd05860          92 -SVTFNVYV   99 (101)
T ss_pred             -EEEEEEEE
Confidence             66666654

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.80  E-value=3.7e-07  Score=51.19  Aligned_cols=37  Identities=16%  Similarity=0.495  Sum_probs=30.5

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...+|+|.+++.+|+|.|+|.+....... +..+.|.|
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~-~~~v~l~v  108 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIEDN-YDTVEVQV  108 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCCCc-eeEEEEEE
Confidence            35678999999999999999999776666 66777765

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=98.79  E-value=1.1e-08  Score=53.73  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=25.0

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|..
T Consensus        42 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~   68 (78)
T cd05743          42 GTLTIRDVKESDQGAYTCEAINTRGMV   68 (78)
T ss_pred             EEEEECCCChHHCEEEEEEEEecCCEE
Confidence            468889999999999999999999987

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=98.78  E-value=1.8e-08  Score=54.85  Aligned_cols=35  Identities=26%  Similarity=0.469  Sum_probs=28.3

Q ss_pred             CCceEEeecC-CCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         110 GFSITLEKVD-RHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       110 ~~~~~l~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      ++.+.+.++. .+|+|.|+|.|.|.+|...+..+.|
T Consensus        57 ~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          57 DGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL   92 (94)
T ss_pred             CCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence            4567777874 6999999999999999886666655

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=98.78  E-value=2.1e-08  Score=54.35  Aligned_cols=34  Identities=24%  Similarity=0.378  Sum_probs=29.7

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus        58 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l   91 (92)
T cd05747          58 KSTFEISKVQMSDEGNYTVVVENSEGKQ-EAQFTL   91 (92)
T ss_pred             eeEEEECCCCcccCEeEEEEEEcCCCCE-eEEEEe
Confidence            3578889999999999999999999987 767765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=98.78  E-value=1.6e-08  Score=54.82  Aligned_cols=36  Identities=25%  Similarity=0.560  Sum_probs=31.0

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|++.+++.+|+|.|+|.|.|..|...+.++.|.|
T Consensus        57 ~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~l~~   92 (92)
T cd04977          57 STLTIYNANIEDAGIYKCVATDAKGTESEATVNLKI   92 (92)
T ss_pred             EEEEEecCCcccCEEEEEEEEcCCCCcceeEEEEEC
Confidence            468899999999999999999998766577888765

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.77  E-value=1.4e-07  Score=49.44  Aligned_cols=60  Identities=13%  Similarity=0.295  Sum_probs=45.1

Q ss_pred             EEEEEeec-CCCCCceEEEecCCCCCCCce-------eeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          28 ITLECKAS-GNPVPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        28 ~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      +.|.|... +.|++.+.|++++.++.....       ....+.|.|......|.+.|.|.+.|..+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            57899864 568889999999988854221       1233468888888888899999999976654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.76  E-value=1.2e-07  Score=51.30  Aligned_cols=70  Identities=17%  Similarity=0.278  Sum_probs=49.0

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCC--------------------ceeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSG--------------------EKSLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~--------------------~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      |++++|.|.........+.|++........                    .......+|.|.+++..|+|.|.|.+....
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~l~~~DsG~Y~c~v~~~~   80 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPNGSLLIQNLTKEDSGTYTLQIISTN   80 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCCceEEEccCCchhcEEEEEEEEcCC
Confidence            788999998776556679999865432110                    012234679999999999999999998876


Q ss_pred             CCceEEeEEE
Q psy7616          85 GDPVTVDMTL   94 (147)
Q Consensus        85 ~~~~~~~~~l   94 (147)
                      +......+.|
T Consensus        81 ~~~~~~~~~l   90 (92)
T cd05741          81 GVTENAKFFL   90 (92)
T ss_pred             CcEEEEEEEE
Confidence            5543444443

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.74  E-value=4.8e-07  Score=47.78  Aligned_cols=74  Identities=16%  Similarity=0.340  Sum_probs=51.7

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      .+..|++++|.|...+.+.  +.+.|...+..... ........|.+..+...|+|.|.|.+...... ....+.+.|
T Consensus        10 ~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~-~~~~~~V~V   85 (88)
T cd07694          10 HVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSE-KTLKLDIKV   85 (88)
T ss_pred             eeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-eccCCccEEEeceeCcccCCEEEEEEEECceE-EEEEeeEEE
Confidence            6789999999999865444  48999987765321 11235567888999999999999999754222 244444444

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.74  E-value=6.9e-07  Score=50.46  Aligned_cols=37  Identities=22%  Similarity=0.312  Sum_probs=29.4

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      ..+|.|.+++.+|+|.|+|.+.|..+.. ....+.|+|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  115 (115)
T cd05880          78 DASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLRV  115 (115)
T ss_pred             ceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            4568899999999999999999987753 245666664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=98.73  E-value=2.1e-08  Score=53.45  Aligned_cols=37  Identities=19%  Similarity=0.442  Sum_probs=32.5

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +.+..|.|+
T Consensus        48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~-~~s~~v~v~   84 (84)
T cd05742          48 SSTLTIPNATLKDSGTYTCAASSGTMDQ-KESTKVNIH   84 (84)
T ss_pred             EEEEEECCCChhhCEEEEEEEccCCCce-EEEEEEEEC
Confidence            3468889999999999999999999988 778888875

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=98.73  E-value=2e-08  Score=52.59  Aligned_cols=35  Identities=23%  Similarity=0.563  Sum_probs=28.2

Q ss_pred             CCceEEeecCC----CCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         110 GFSITLEKVDR----HQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       110 ~~~~~l~~~~~----~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      .+.|.|.+++.    +|+|.|+|.|.|.+|...+..+.|
T Consensus        38 ~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l   76 (77)
T cd05733          38 SGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL   76 (77)
T ss_pred             CCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence            46777877754    789999999999999886666665

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.72  E-value=1.4e-08  Score=54.69  Aligned_cols=36  Identities=39%  Similarity=0.711  Sum_probs=31.7

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        55 ~~~L~I~~v~~~D~G~Y~C~~~n~~g~~-~~~~~l~V   90 (90)
T PF07679_consen   55 SSSLTIKNVTREDAGTYTCVASNSSGEA-TASVNLTV   90 (90)
T ss_dssp             EEEEEESSESGGGSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             eeEEccCCCChhhCEEEEEEEEECCCEE-EEEEEEEC
Confidence            4568889999999999999999999988 87888876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.72  E-value=5.9e-07  Score=49.96  Aligned_cols=36  Identities=22%  Similarity=0.497  Sum_probs=30.8

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+|.|.+++.+|+|.|+|.+.+..+.. ...++|.|
T Consensus        67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~-~~~~~l~v  102 (106)
T cd05877          67 DASLVITDLRLEDYGRYRCEVIDGLEDE-SVVVALRL  102 (106)
T ss_pred             cEEEEEccCChHHCEEEEEEEEecccce-EEEEEEEE
Confidence            3468899999999999999999988876 77787776

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=98.71  E-value=3.5e-08  Score=53.81  Aligned_cols=37  Identities=32%  Similarity=0.545  Sum_probs=30.2

Q ss_pred             CCceEEeec-----CCCCCeEEEEEeecC-CCCCcCeeeEEEE
Q psy7616         110 GFSITLEKV-----DRHQAGVYQCTATNG-VGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~-----~~~d~G~Y~C~a~n~-~g~~~~~~~~l~V  146 (147)
                      ++.+.+.++     +.+|+|.|+|.|.|. .|...+..+.|+|
T Consensus        53 ~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          53 NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             CCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence            445666555     689999999999999 9988788888876

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.70  E-value=2.2e-08  Score=51.85  Aligned_cols=72  Identities=38%  Similarity=0.714  Sum_probs=46.5

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCC-CCceEEEecCCCC--CCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSL--PSGEKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +|.+...+..   ....+..+.|.|.+.+.+ .+.+.|+......  ...........|.+.++..+|.|.|.|.+.|
T Consensus         1 kP~I~~~~~~---~~~~~~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPP---VVTSGGSVTLTCSAEGGPPPPSISWYDSNPSFNSNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTS---EEETTEEEEEEEEESSEESSEEEEEETEEEEEEEEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCC---cEeeceeEEEEEEEccccCCeEEEEEecCCceeeeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3556555543   333344499999998876 7789999110000  0111123556788999999999999999865

...

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=98.69  E-value=4.9e-08  Score=53.15  Aligned_cols=36  Identities=28%  Similarity=0.477  Sum_probs=29.2

Q ss_pred             CCceEEeecC-CCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616         110 GFSITLEKVD-RHQAGVYQCTATNGVGDPVTVDMTLE  145 (147)
Q Consensus       110 ~~~~~l~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l~  145 (147)
                      ++.|.+.++. .+|+|.|+|.|.|..|...+..+.|.
T Consensus        57 ~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   93 (94)
T cd05850          57 AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANLR   93 (94)
T ss_pred             CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEEe
Confidence            4567777755 59999999999999998877777764

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.68  E-value=3.4e-08  Score=53.72  Aligned_cols=36  Identities=19%  Similarity=0.258  Sum_probs=32.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +..|.|.+++.+|+|.|+|.+.|..|.. +..+.|+|
T Consensus        59 ~~~L~I~~~~~~DsG~Y~C~~~N~~g~~-~~~~~L~v   94 (94)
T cd05756          59 KDLLWFLPAALEDSGLYTCVVRNSTYCM-KVSISLTV   94 (94)
T ss_pred             CCeEEEccCCcccCeEEEEEEcCCCccE-EEEEEEEC
Confidence            5678899999999999999999999987 77888776

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.67  E-value=8e-08  Score=53.76  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=31.6

Q ss_pred             CCceEEeecC-CCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVD-RHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      +..|.+.++. .+|.|.|+|.|.|.+|.. +..+.|.|.
T Consensus        68 ~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i~L~~~  105 (109)
T cd05773          68 TSILTIINVSAALDYALFTCTAHNSLGED-SLDIQLVST  105 (109)
T ss_pred             eeEEEECcCCccCCCEEEEEEEEeCCccC-cEEEEEEec
Confidence            3567888887 599999999999999998 888888874

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.66  E-value=1.4e-06  Score=49.31  Aligned_cols=37  Identities=22%  Similarity=0.332  Sum_probs=28.5

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      ..+|+|.+++.+|+|.|+|.+.|.-+.. .+..+.|.|
T Consensus        79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  116 (116)
T cd05715          79 DASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV  116 (116)
T ss_pred             eeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            3568899999999999999999886543 234566654

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=98.66  E-value=7.9e-08  Score=49.23  Aligned_cols=30  Identities=17%  Similarity=0.387  Sum_probs=23.7

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      .|.+.++  .|+|.|+|.|.|..|.. +.++.|
T Consensus        39 ~L~i~~~--~d~G~Y~C~A~N~~G~~-~~~a~l   68 (69)
T cd05739          39 VLELTNI--YESANYTCVAISSLGMI-EATAQV   68 (69)
T ss_pred             EEEEecc--ccCeeEEEEEEeCCCEE-EEEEEE
Confidence            4666665  58999999999999987 656655

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=98.66  E-value=2.7e-08  Score=54.05  Aligned_cols=37  Identities=27%  Similarity=0.414  Sum_probs=30.1

Q ss_pred             cCCceEEeecC-CCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616         109 EGFSITLEKVD-RHQAGVYQCTATNGVGDPVTVDMTLE  145 (147)
Q Consensus       109 ~~~~~~l~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l~  145 (147)
                      .++.|.+.++. .+|+|.|+|.|.|..|...+..+.|.
T Consensus        55 ~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~   92 (93)
T cd05849          55 VGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS   92 (93)
T ss_pred             ECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence            35678888875 69999999999999998866667664

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.64  E-value=9.6e-08  Score=52.36  Aligned_cols=38  Identities=26%  Similarity=0.517  Sum_probs=33.5

Q ss_pred             cCCceEEeecCCCCCeEEEEEeec-CCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n-~~g~~~~~~~~l~V~  147 (147)
                      ...+|.|.+++.+|.|.|+|.+.| +.|.. +..+.|.||
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~~-~~~~~L~V~   99 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGNR-ESQLNLTVY   99 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCCe-EEEEEEEEC
Confidence            456799999999999999999999 67765 889999996

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.63  E-value=1.2e-06  Score=47.57  Aligned_cols=69  Identities=16%  Similarity=0.298  Sum_probs=49.2

Q ss_pred             CceEEeeCCeEEEEEeecCCCCCceEEEecCCCC---------CCCc-eee----eccceEEEeecCCCCeEEEEEeecC
Q psy7616          18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL---------PSGE-KSL----EGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        18 ~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~---------~~~~-~~~----~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      +++.+..|+++.|.|...+.....+.|++.+..+         ...+ ...    ....|.|..++..|.|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            4678999999999999988766668888765321         1111 111    1225899999999999999998765


Q ss_pred             CCC
Q psy7616          84 VGD   86 (147)
Q Consensus        84 ~~~   86 (147)
                      ...
T Consensus        85 p~~   87 (95)
T cd05881          85 PPQ   87 (95)
T ss_pred             cCe
Confidence            433

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.63  E-value=5.8e-08  Score=50.85  Aligned_cols=35  Identities=29%  Similarity=0.530  Sum_probs=27.2

Q ss_pred             CCceEEeecCCC----CCeEEEEEeecCCCCCcCeeeEE
Q psy7616         110 GFSITLEKVDRH----QAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       110 ~~~~~l~~~~~~----d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      ++.+.|..++.+    |.|.|+|.|.|.+|...+..+.|
T Consensus        38 ~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05874          38 TGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI   76 (77)
T ss_pred             CceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence            566777777643    78999999999999886666655

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>KOG3515|consensus

Probab=98.63  E-value=1.8e-07  Score=67.03  Aligned_cols=77  Identities=23%  Similarity=0.376  Sum_probs=52.8

Q ss_pred             EEeeCCeEEEEEeecCCCC-CceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          21 TVRKGGTITLECKASGNPV-PSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~-~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      .+..|+++.|+|.+.+.|+ ..+.|++.+..+...........|......+..-+.|.|++.+..+.-....+.+.+.
T Consensus        18 ~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l~v~   95 (741)
T KOG3515|consen   18 GLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEHGRYATIADPTLVTTGDVRDTVAELNCRAFNSVGMPSRCPMILDVD   95 (741)
T ss_pred             hhccCCcceeeeecCCCCCCcceEEEecCcccccccccccCCceeeecchhhhhhhhhhhhcccccCceecceeeccc
Confidence            7889999999999887754 5799999887665333334455666666666677788888887654433344444443

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.62  E-value=5.7e-07  Score=47.63  Aligned_cols=57  Identities=25%  Similarity=0.508  Sum_probs=39.3

Q ss_pred             EEEEEeecC-CCCCceEEEecCCCCCCCcee----------eeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          28 ITLECKASG-NPVPSIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        28 ~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      +.|.|.+.+ .|.+.+.|++++..+......          ...+.|.+......+.+.|.|.+.+..
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~   69 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA   69 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence            578999876 577899999998766432211          112345565555667789999998854

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=98.62  E-value=1.2e-07  Score=52.03  Aligned_cols=30  Identities=40%  Similarity=0.722  Sum_probs=26.5

Q ss_pred             cCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         118 VDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       118 ~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        71 ~~~~D~G~Y~C~a~N~~G~~~s~~~~l~v~  100 (100)
T cd07693          71 KGRSDEGVYVCVAHNSLGEAVSRNASLEVA  100 (100)
T ss_pred             CCcCcCEEEEEEEEccccceecceEEEEeC
Confidence            368999999999999999966889999874

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=98.62  E-value=9.6e-08  Score=50.89  Aligned_cols=38  Identities=18%  Similarity=0.385  Sum_probs=31.2

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V~  147 (147)
                      ...|.+.+++.+|+|.|+|.|.|..+.. .+..+.|+|+
T Consensus        45 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~   83 (84)
T cd05861          45 RSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNITVH   83 (84)
T ss_pred             EEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence            4578889999999999999999987622 3777888874

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.61  E-value=8.3e-07  Score=49.56  Aligned_cols=65  Identities=20%  Similarity=0.434  Sum_probs=47.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCC--C-------------CCCce-ee-----eccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSS--L-------------PSGEK-SL-----EGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~--~-------------~~~~~-~~-----~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|+++.|.|...+.+...+.|++....  .             ..... ..     ....|.|.+++.+|+|.|.
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   86 (109)
T cd04983           7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSAVYF   86 (109)
T ss_pred             ceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCEEEE
Confidence            56889999999999988767778999985421  0             00111 11     2346899999999999999


Q ss_pred             EEeecC
Q psy7616          78 CTATNG   83 (147)
Q Consensus        78 C~~~~~   83 (147)
                      |.+.+.
T Consensus        87 C~~~~~   92 (109)
T cd04983          87 CALSES   92 (109)
T ss_pred             EEEecC
Confidence            998764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.59  E-value=5e-07  Score=50.60  Aligned_cols=37  Identities=22%  Similarity=0.461  Sum_probs=26.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+|.|.+++.+|+|.|.|.+.............|.|
T Consensus        78 ~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   78 NFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             EEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             eEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            3468889999999999999998873222344555554

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.58  E-value=1.6e-07  Score=50.89  Aligned_cols=29  Identities=24%  Similarity=0.440  Sum_probs=26.4

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      .+..|.+.++..+|+|.|+|.|.|..|..
T Consensus        50 ~~~~L~I~~v~~~DsG~YtC~~~n~~~~~   78 (92)
T cd05757          50 KGSKLLIQNVTEEDAGNYTCKLTFTHNGK   78 (92)
T ss_pred             cCCEEEEeeCChhhCEEEEEEEEecCCCE
Confidence            56789999999999999999999998776

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.57  E-value=1.3e-06  Score=47.50  Aligned_cols=70  Identities=27%  Similarity=0.385  Sum_probs=49.3

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-----eeeeccceEEEeecCCCCeEEEEEeec
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-----KSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      |.+...+..   .+..|++++|.|.... ....+.|++.+.......     .......+.|.+++..|+|.|.|....
T Consensus         2 P~l~a~p~~---vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~~   76 (94)
T cd05711           2 PFLSAHPSP---VVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGSY   76 (94)
T ss_pred             CEEEecCCC---ccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEEC
Confidence            555555532   7889999999998755 455799999876533211     011234678899999999999998753

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.55  E-value=1.3e-07  Score=50.57  Aligned_cols=37  Identities=27%  Similarity=0.356  Sum_probs=31.5

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. .....|.|+
T Consensus        49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~-~~~t~~~V~   85 (86)
T cd05862          49 SSTLTIENVTLSDLGRYTCTASSGQMIA-KNSTIVIVH   85 (86)
T ss_pred             eeEEEEecCCcccCEEEEEEEeecceEe-cccEEEEEe
Confidence            3468889999999999999999998877 777777774

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=98.54  E-value=1.7e-07  Score=49.10  Aligned_cols=36  Identities=22%  Similarity=0.421  Sum_probs=26.8

Q ss_pred             cCCceEEeecCC----CCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         109 EGFSITLEKVDR----HQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       109 ~~~~~~l~~~~~----~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      .++.|.+..++.    .|+|.|+|.|.|.+|...+..+.|
T Consensus        37 ~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~   76 (77)
T cd05875          37 RSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL   76 (77)
T ss_pred             CCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence            355777776642    469999999999999886665554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.53  E-value=1.1e-07  Score=49.60  Aligned_cols=32  Identities=19%  Similarity=0.474  Sum_probs=27.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeee
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM  142 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~  142 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +.++
T Consensus        43 ~~~L~I~~~~~~DsG~Y~C~a~N~~g~~-~~~~   74 (76)
T cd05895          43 SSELQISKASLADNGEYKCMVSSKLGND-SVTA   74 (76)
T ss_pred             EEEEEECcCCcccCEEEEEEEEeCCCce-eEEE
Confidence            3568889999999999999999999976 4444

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=98.51  E-value=1.6e-07  Score=48.81  Aligned_cols=33  Identities=24%  Similarity=0.466  Sum_probs=27.3

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT  143 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~  143 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +..++
T Consensus        42 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~   74 (75)
T cd05750          42 NSELQINKAKLADSGEYTCVVENILGND-TVTAN   74 (75)
T ss_pred             eEEEEEccCCcccCeEEEEEEEEcCCce-eEEEe
Confidence            3467889999999999999999999987 54443

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=98.49  E-value=2.3e-07  Score=49.98  Aligned_cols=38  Identities=24%  Similarity=0.348  Sum_probs=32.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.|.+++.+|+|.|+|.|.|..+.....+++|.|+
T Consensus        50 ~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~~l~V~   87 (89)
T cd04979          50 EDGLLIRSVSPADAGVYTCQSVEHGFKQTLATYSLNVL   87 (89)
T ss_pred             CCCEEEccCCHHHCEEEEEEEecCccceeEeEEEEEEe
Confidence            34588899999999999999998876666888888885

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=98.49  E-value=2.3e-07  Score=50.16  Aligned_cols=32  Identities=31%  Similarity=0.572  Sum_probs=25.7

Q ss_pred             CCceEEeecCC-CCCeEEEEEeecCCCCCcCee
Q psy7616         110 GFSITLEKVDR-HQAGVYQCTATNGVGDPVTVD  141 (147)
Q Consensus       110 ~~~~~l~~~~~-~d~G~Y~C~a~n~~g~~~~~~  141 (147)
                      +..|.+.++.. +|+|.|+|.|.|..|...+..
T Consensus        57 ~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S~~   89 (91)
T cd04967          57 GGNLVISNPSKAKDAGRYQCLASNIVGTVLSRE   89 (91)
T ss_pred             CCEEEEecCCccCCCEEEEEEEEcCCCEEEecc
Confidence            45677777764 999999999999999775544

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=98.47  E-value=5.8e-07  Score=47.48  Aligned_cols=34  Identities=15%  Similarity=0.274  Sum_probs=25.9

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      .+..|.+..+  .|.|.|.|.|+|.+|...+..+.|
T Consensus        47 ~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~~   80 (81)
T cd05749          47 SPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGTV   80 (81)
T ss_pred             CCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEEe
Confidence            3455666665  589999999999999886666665

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.45  E-value=2.8e-07  Score=48.99  Aligned_cols=38  Identities=16%  Similarity=0.365  Sum_probs=33.5

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..+.+.+++.+|+|.|+|.|.|..|...|..+.|+|
T Consensus        46 ~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~~s~~~~i~~   83 (83)
T cd05753          46 SNSNLSIPQATLSDSGSYHCSGIIGSYDYSSEPVSITV   83 (83)
T ss_pred             CCceEEECccCHHHCEEEEEEEEeCCceecCCCEEEEC
Confidence            35678889999999999999999999888788888876

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.45  E-value=1.5e-06  Score=48.19  Aligned_cols=65  Identities=26%  Similarity=0.572  Sum_probs=46.0

Q ss_pred             EEeeCCeEEEEEeecCC-CCCceEEEecCCC-CC-----------------CCce-ee-----eccceEEEeecCCCCeE
Q psy7616          21 TVRKGGTITLECKASGN-PVPSIIWSKKDSS-LP-----------------SGEK-SL-----EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~-~~-----------------~~~~-~~-----~~~~l~~~~~~~~~~g~   75 (147)
                      .+..|+++.|.|..... ....+.|++.... ..                 .... ..     ....|.|.+++..|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            56789999999998765 5667999985431 00                 0000 11     23378999999999999


Q ss_pred             EEEEeecCCC
Q psy7616          76 YQCTATNGVG   85 (147)
Q Consensus        76 y~C~~~~~~~   85 (147)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987553

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.44  E-value=7.3e-07  Score=48.81  Aligned_cols=73  Identities=25%  Similarity=0.430  Sum_probs=50.0

Q ss_pred             eCCeEEEEEeecC-CCCCceEEEecCCCCC--------CC---------ce--e-eeccceEEEeecCCCCeEEEEEeec
Q psy7616          24 KGGTITLECKASG-NPVPSIIWSKKDSSLP--------SG---------EK--S-LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        24 ~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~--------~~---------~~--~-~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .|++++|+|.... .....+.|++....+.        ..         .+  . ....+|.|.+++.+|+|.|.|.+..
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            6899999998754 3455689998532110        00         00  1 1235799999999999999999988


Q ss_pred             CCCCceEEeEEEEE
Q psy7616          83 GVGDPVTVDMTLEV   96 (147)
Q Consensus        83 ~~~~~~~~~~~l~v   96 (147)
                      ..+......+.|.|
T Consensus        83 ~~~~~~~~~f~L~v   96 (97)
T cd05775          83 KNGVTITKEFTLHI   96 (97)
T ss_pred             CCCCeEEEEEEEEe
Confidence            77665566666654

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.44  E-value=4.4e-07  Score=49.27  Aligned_cols=37  Identities=16%  Similarity=0.275  Sum_probs=29.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCC---cCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDP---VTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~---~~~~~~l~V  146 (147)
                      +..|.+.++..+|+|.|+|.|.+.+|..   .+..+.|.|
T Consensus        54 ~~~L~I~~v~~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v   93 (95)
T cd05897          54 STYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIKLRI   93 (95)
T ss_pred             CCEEEEEEcChhhCEEEEEEEEEeeCCEEEEEEEEEEEEE
Confidence            3578899999999999999999998654   344555554

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.43  E-value=3.8e-06  Score=46.16  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=27.5

Q ss_pred             cceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        61 ~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      .+|.|.+++..|+|.|.|.+.+..+. ....+.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~i~l~v   99 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFY-EEATVELKV   99 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence            46999999999999999999886554 356665554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.42  E-value=7.4e-06  Score=43.17  Aligned_cols=70  Identities=20%  Similarity=0.283  Sum_probs=43.7

Q ss_pred             EEEEEeecC-CCCCceEEEecCCCCCCCce--------eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          28 ITLECKASG-NPVPSIIWSKKDSSLPSGEK--------SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        28 ~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      +.|.|.+.+ .|.+.|.|++++.++.....        ....+.|.|..-...|...|.|++.++.-........|.|.
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            578998755 47788999999988754321        11233455544434444569999998664434455555443

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.41  E-value=3.4e-06  Score=47.17  Aligned_cols=36  Identities=28%  Similarity=0.556  Sum_probs=30.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+|.|.+++.+|+|.|.|.+....... +..+.|.|
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~-~~~v~L~V  106 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGINDE-QDTVPLEV  106 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCccc-EEEEEEEE
Confidence            4568889999999999999999866544 77888876

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.40  E-value=6.9e-06  Score=46.01  Aligned_cols=73  Identities=25%  Similarity=0.491  Sum_probs=47.5

Q ss_pred             eCCeEEEEEeecCCC----------CCceEEEecC--CCC------------CC---Cce-e------eeccceEEEeec
Q psy7616          24 KGGTITLECKASGNP----------VPSIIWSKKD--SSL------------PS---GEK-S------LEGFSITLEKVD   69 (147)
Q Consensus        24 ~g~~~~l~C~~~~~~----------~~~v~w~~~~--~~~------------~~---~~~-~------~~~~~l~~~~~~   69 (147)
                      .|++++|+|.....+          ...+.|++..  ...            ..   ++. .      .....|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            378999999875432          2569999852  110            00   000 1      123469999999


Q ss_pred             CCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          70 RHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        70 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      .+|+|.|.|.+....... .+.+.|.|.
T Consensus        81 ~sD~G~Y~C~v~~~~~~~-~~~v~l~V~  107 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDE-QDTVPLEVT  107 (110)
T ss_pred             hhhCEEEEEEEEeCCCcc-eEEEEEEEE
Confidence            999999999998755443 566666654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=98.38  E-value=2.1e-06  Score=45.06  Aligned_cols=34  Identities=21%  Similarity=0.420  Sum_probs=27.4

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..+.+.++ .+|+|.|+|.|.|.   ..+..++|+|
T Consensus        45 ~~~~l~i~~~-~~dsG~Y~C~a~~~---~~S~~v~l~V   78 (78)
T cd05752          45 TTNSYRIRAA-NNDSGEYRCQTQGS---SLSDPVHLEV   78 (78)
T ss_pred             cCCeEEEeec-ccCCEEeEEECCCC---cCCCCEEEeC
Confidence            4567888999 99999999999986   2366777765

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.38  E-value=9.3e-06  Score=44.42  Aligned_cols=72  Identities=28%  Similarity=0.444  Sum_probs=46.6

Q ss_pred             CCeEEEEEeecCCCC-CceEEEecCCCCC---------C------C--ce------eeeccceEEEeecCCCCeEEEEEe
Q psy7616          25 GGTITLECKASGNPV-PSIIWSKKDSSLP---------S------G--EK------SLEGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus        25 g~~~~l~C~~~~~~~-~~v~w~~~~~~~~---------~------~--~~------~~~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      |++++|.|....... ..+.|++.....+         .      .  .+      ......|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            678999998654332 3599998532110         0      0  00      012346999999999999999998


Q ss_pred             ecCCCCceEEeEEEEE
Q psy7616          81 TNGVGDPVTVDMTLEV   96 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v   96 (147)
                      ........+..+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            8655444466666655

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.38  E-value=7.3e-06  Score=44.81  Aligned_cols=71  Identities=23%  Similarity=0.376  Sum_probs=44.8

Q ss_pred             CeEEEEEeecCCC---CCceEEEecCCC---------------CCCC--ce--ee----eccceEEEeecCCCCeEEEEE
Q psy7616          26 GTITLECKASGNP---VPSIIWSKKDSS---------------LPSG--EK--SL----EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        26 ~~~~l~C~~~~~~---~~~v~w~~~~~~---------------~~~~--~~--~~----~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      ++++|.|......   ...+.|++....               ....  .+  ..    ....|.|.+++..|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4678999876543   346999986531               0000  00  01    245799999999999999999


Q ss_pred             eecCCCCceEEeEEEEE
Q psy7616          80 ATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v   96 (147)
                      +...........+.|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            87533332356665554

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.38  E-value=6.4e-06  Score=45.12  Aligned_cols=72  Identities=24%  Similarity=0.405  Sum_probs=47.5

Q ss_pred             ceEEcCCCCceEEeeCCeEEEEEeecCC-CCCc--eEEEecCCCCCCCcee-------eeccceEEEeecCCCCe-EEEE
Q psy7616          10 SIRTSPSNGQLTVRKGGTITLECKASGN-PVPS--IIWSKKDSSLPSGEKS-------LEGFSITLEKVDRHQAG-VYQC   78 (147)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~--v~w~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~g-~y~C   78 (147)
                      .+.+.+.+.  .+..|+.++|.|.+.+. |...  +.|++++..+......       .....+.+ .+.+.|.| .|.|
T Consensus         3 ~V~l~~~p~--~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~-~~~r~D~g~~~sC   79 (100)
T cd05755           3 SVELSPLPS--WQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITI-TVDREDHGANFSC   79 (100)
T ss_pred             eEEEecCCC--cccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEE-ecchhhCCcEEEE
Confidence            455555544  67899999999998764 6665  7999999877542211       12234444 34566666 6999


Q ss_pred             EeecCC
Q psy7616          79 TATNGV   84 (147)
Q Consensus        79 ~~~~~~   84 (147)
                      ++....
T Consensus        80 ~A~l~l   85 (100)
T cd05755          80 ETELDL   85 (100)
T ss_pred             EEEecc
Confidence            998754

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.38  E-value=4.5e-06  Score=46.72  Aligned_cols=64  Identities=23%  Similarity=0.517  Sum_probs=46.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-----------------CCce-e----eeccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-----------------SGEK-S----LEGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-----------------~~~~-~----~~~~~l~~~~~~~~~~g   74 (147)
                      .+.+..|++++|.|...+ +.+.+.|++...  .+.                 .... .    .....|.|.+++.+|+|
T Consensus         7 ~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~~Dsg   85 (110)
T cd05899           7 YLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEPEDSA   85 (110)
T ss_pred             ceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCChhhCE
Confidence            568899999999999877 667899998542  110                 0000 0    12346889999999999


Q ss_pred             EEEEEeecC
Q psy7616          75 VYQCTATNG   83 (147)
Q Consensus        75 ~y~C~~~~~   83 (147)
                      .|.|.+...
T Consensus        86 ~Y~Ca~~~~   94 (110)
T cd05899          86 VYLCASSLG   94 (110)
T ss_pred             EEEEEeeCC
Confidence            999998653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.37  E-value=4e-05  Score=46.30  Aligned_cols=82  Identities=17%  Similarity=0.321  Sum_probs=56.9

Q ss_pred             ceEEeeCCeEEEEEeec-CCCCCceEEEecCCCCC----------CC--cee------eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLP----------SG--EKS------LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~----------~~--~~~------~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      ...+.+|+++.|.|... +...+.+.|++....+.          ..  .+.      .....+.|++++.+|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            34778999999999974 54577899999643221          00  011      1345789999999999999999


Q ss_pred             eecCCCC-ceEEeEEEEEeeee
Q psy7616          80 ATNGVGD-PVTVDMTLEVLCKI  100 (147)
Q Consensus        80 ~~~~~~~-~~~~~~~l~v~~~~  100 (147)
                      ....... ..+....|.|....
T Consensus       104 F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEecCCCCCceeEEEEEEEchh
Confidence            8764333 44667777776543

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.37  E-value=5.9e-06  Score=45.95  Aligned_cols=65  Identities=26%  Similarity=0.489  Sum_probs=44.7

Q ss_pred             ceEEeeCCeEEEEEeecCCC-CCceEEEecCC--CCC----------C---Cce-ee---eccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNP-VPSIIWSKKDS--SLP----------S---GEK-SL---EGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~~--~~~----------~---~~~-~~---~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+.+..|++++|.|...+.. ...+.|++...  ...          .   ... ..   ....|.|.+++.+|+|.|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsg~Y~C   88 (106)
T cd04980           9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDAAVYYC   88 (106)
T ss_pred             cEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHCEEEEE
Confidence            55788999999999986544 56799997431  110          0   000 10   12358899999999999999


Q ss_pred             EeecC
Q psy7616          79 TATNG   83 (147)
Q Consensus        79 ~~~~~   83 (147)
                      .+.+.
T Consensus        89 a~~~~   93 (106)
T cd04980          89 QQYGT   93 (106)
T ss_pred             EEeCC
Confidence            88653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.36  E-value=7.9e-07  Score=48.66  Aligned_cols=38  Identities=21%  Similarity=0.462  Sum_probs=34.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+|.+.+++.+|+|.|.|.+.+..|......+.|.||
T Consensus        60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~vy   97 (97)
T cd05775          60 DYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHIY   97 (97)
T ss_pred             ceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEeC
Confidence            46799999999999999999999988888888999986

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=98.33  E-value=9.8e-07  Score=46.84  Aligned_cols=35  Identities=26%  Similarity=0.500  Sum_probs=30.6

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+.+.++..+|.|.|+|.+.|..|.. +.+++|+|
T Consensus        51 ~~l~i~~~~~~d~g~Y~C~~~n~~g~~-~~~~~l~v   85 (85)
T cd05729          51 WTLILESVVPSDSGKYTCIVENKYGSI-NHTYKVDV   85 (85)
T ss_pred             EEEEEeECCcccCEEEEEEEEECCceE-EEEEEEeC
Confidence            357788999999999999999999987 77888875

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.31  E-value=1.3e-05  Score=45.07  Aligned_cols=37  Identities=32%  Similarity=0.601  Sum_probs=28.7

Q ss_pred             ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ..+|.|.+++..|+|.|.|.+....... ...+.|.|.
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V~  114 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDVS  114 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEEE
Confidence            4579999999999999999998766553 556666554

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.31  E-value=2e-06  Score=47.32  Aligned_cols=37  Identities=19%  Similarity=0.391  Sum_probs=31.8

Q ss_pred             CCceEEeecCCCCCeEEEEEeec-CCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n-~~g~~~~~~~~l~V~  147 (147)
                      ..+|+|.+++.+|+|.|.|.+.+ +.|.. +..+.|.|+
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~-~~~~~L~V~  100 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGNF-EAELVLTVW  100 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCCe-eeEEEEEeC
Confidence            55699999999999999999998 56765 888999885

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.30  E-value=2.5e-06  Score=46.46  Aligned_cols=38  Identities=34%  Similarity=0.482  Sum_probs=32.0

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecC-CCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNG-VGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~-~g~~~~~~~~l~V~  147 (147)
                      ...+|.|.+++.+|.|.|+|.+.+- .|+. +.+..|+||
T Consensus        58 ~d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~-~~~~~l~~~   96 (96)
T cd05887          58 LDATIMLENVGFSDIGVYICKAVTFPLGNT-QSSTTVTVL   96 (96)
T ss_pred             CccEEEEeCCCccccEEEEEEEEeCCCCCe-eEEEEEEEC
Confidence            3567999999999999999998555 5766 889999986

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.30  E-value=1.8e-05  Score=43.52  Aligned_cols=37  Identities=16%  Similarity=0.302  Sum_probs=28.2

Q ss_pred             ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ...|.|.+++.+|+|.|.|.+.+......+..+.|.|
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            3469999999999999999998744443466666654

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.29  E-value=3.1e-05  Score=42.50  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=28.7

Q ss_pred             cceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        61 ~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      .+|.|.+++..|.|.|.|.+.+......+..+.|.|
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            578999999999999999999944333467777765

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=98.29  E-value=9.4e-07  Score=47.12  Aligned_cols=35  Identities=29%  Similarity=0.384  Sum_probs=29.1

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      .+..+.+.+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus        50 ~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~-~~~~~l   84 (85)
T cd05754          50 FNGILTIRNVQLSDAGTYVCTGSNMLDTD-EATATL   84 (85)
T ss_pred             cCCEEEECCCCHHHCEEEEEEEeccCCeE-eEEEEE
Confidence            35679999999999999999999999977 544443

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.29  E-value=1.3e-06  Score=48.03  Aligned_cols=35  Identities=17%  Similarity=0.320  Sum_probs=30.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+|.|.+++.+|+|.|+|.+.|..+.. +..+.|.|
T Consensus        65 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~i~l~v   99 (100)
T cd05713          65 VALRIHNVRASDEGLYTCFFQSDGFYE-EATVELKV   99 (100)
T ss_pred             EEEEEEcCChhhCEEEEEEEecCCcEE-EEEEEEEE
Confidence            468899999999999999999987765 77888877

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.27  E-value=1.7e-06  Score=46.76  Aligned_cols=37  Identities=32%  Similarity=0.560  Sum_probs=29.7

Q ss_pred             CCceEEeecCCCCCeEEEEEeec-CCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n-~~g~~~~~~~~l~V~  147 (147)
                      +..|.|.+++.+|+|.|+|.|.| ..+.. ...++|.|+
T Consensus        52 ~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~-~~~~~l~v~   89 (91)
T cd05871          52 ERGLLLRSLQRSDAGVYTCTAVEHSFSQT-LAKYTLHVI   89 (91)
T ss_pred             cCeEEEeeCChhHCEEEEEEEEccCCeEE-EEEEEEEEe
Confidence            45588999999999999999985 55545 557888874

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.25  E-value=2.1e-06  Score=47.06  Aligned_cols=38  Identities=29%  Similarity=0.374  Sum_probs=31.2

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+..|.+.++..+|+|.|+|.+.|...-. ...++|+|
T Consensus        67 ~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~-~~~i~l~V  104 (104)
T cd05896          67 KEEDSIWFRPAELQDSGLYTCVLRNSTYCM-KVSMSLTV  104 (104)
T ss_pred             EeCCEEEEEeCChhhCeEEEEEECCCCcce-EEEEEEEC
Confidence            457789999999999999999999997555 66666665

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=98.24  E-value=1.8e-06  Score=47.28  Aligned_cols=32  Identities=28%  Similarity=0.504  Sum_probs=27.4

Q ss_pred             ceEEeecCCCC-CeEEEEEeecCCCCCcCeeeEE
Q psy7616         112 SITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       112 ~~~l~~~~~~d-~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      .|.+.+++.+| .|.|+|.|.|..|.. ...++|
T Consensus        65 ~L~I~~v~~~d~~G~Y~C~A~N~~G~~-~~~~~L   97 (98)
T cd05758          65 TLTISNTQESDFQTSYNCTAWNSFGSG-TAIISL   97 (98)
T ss_pred             EEEECCccccccceeEEEEEEcCCCcc-cEEEEe
Confidence            68889999955 899999999999988 667766

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.24  E-value=3e-06  Score=46.38  Aligned_cols=37  Identities=24%  Similarity=0.390  Sum_probs=31.4

Q ss_pred             CCceEEeecCCCCCeEEEEEeec-CCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n-~~g~~~~~~~~l~V~  147 (147)
                      ..+|.|.+++.+|+|.|.|.+.+ +.|.. ...++|.||
T Consensus        61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~-~~~~~l~V~   98 (98)
T cd05718          61 DATISISNLRLEDEGNYICEFATFPQGNR-QKVTTLTVL   98 (98)
T ss_pred             ceEEEEccCCcccCEEEEEEEEeCCCCcE-EEEEEEEeC
Confidence            45789999999999999999976 55665 888999986

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.22  E-value=2.8e-05  Score=42.37  Aligned_cols=37  Identities=30%  Similarity=0.326  Sum_probs=29.4

Q ss_pred             ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ..+|.|.+++..|+|.|.|.+........++.+.|.|
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            4478999999999999999998765554577776654

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.20  E-value=5.3e-05  Score=44.23  Aligned_cols=46  Identities=24%  Similarity=0.429  Sum_probs=32.6

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCC
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSS   50 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~   50 (147)
                      +.+..+|.+...+..  .....|+.+.|.|.+.+. |. ..+.|++++..
T Consensus        33 l~v~~~P~v~~~~~~--~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~   80 (139)
T cd05771          33 LSVSEPPRVRLSLEK--LVSMIEEPQTLICHIAGYYPLDVQVEWTREPPG   80 (139)
T ss_pred             EEEecCCceEEeCCC--ceeecCCcEEEEEEECCCCCCCeEEEEEECCCC
Confidence            345567877666542  244478889999999885 43 47999998754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>PHA02633 hypothetical protein; Provisional

Probab=98.19  E-value=4.1e-06  Score=41.01  Aligned_cols=37  Identities=14%  Similarity=0.311  Sum_probs=30.1

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..+++.++..+|+|.|.|..+|..-.. ..++.|+|
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V   52 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCI   52 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEE
Confidence            57889999999999999999999875444 55666665

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.19  E-value=1.9e-05  Score=44.58  Aligned_cols=64  Identities=19%  Similarity=0.442  Sum_probs=45.3

Q ss_pred             ceEEeeCCeEEEEEeecC--CCCCceEEEecC--CCCC------------------CCce-e--e---eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASG--NPVPSIIWSKKD--SSLP------------------SGEK-S--L---EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~--~~~~~v~w~~~~--~~~~------------------~~~~-~--~---~~~~l~~~~~~~   70 (147)
                      .+.+..|+.+.|.|...+  .+.+.+.|++..  ....                  .... .  .   ....|.|.+++.
T Consensus         7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~   86 (116)
T cd04982           7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQNLEK   86 (116)
T ss_pred             eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEECCH
Confidence            557888999999999866  466789999952  1110                  0111 1  1   234689999999


Q ss_pred             CCCeEEEEEeec
Q psy7616          71 HQAGVYQCTATN   82 (147)
Q Consensus        71 ~~~g~y~C~~~~   82 (147)
                      +|+|.|.|.+..
T Consensus        87 ~Dsg~Y~C~~~~   98 (116)
T cd04982          87 EDSATYYCAYWE   98 (116)
T ss_pred             HHCEEEEEEEec
Confidence            999999998764

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.16  E-value=1.5e-05  Score=46.56  Aligned_cols=39  Identities=23%  Similarity=0.300  Sum_probs=28.6

Q ss_pred             ceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEeeeec
Q psy7616          62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        62 ~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~~~  101 (147)
                      +|.|.+++..|+|.|.|.+.+..+.. ...+.|.+..+|.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~   40 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPR   40 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCc
Confidence            47889999999999999998765553 5555666554443

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.15  E-value=2.4e-05  Score=42.84  Aligned_cols=62  Identities=19%  Similarity=0.370  Sum_probs=42.5

Q ss_pred             EEeeCCeEEEEEeecCC--CCCceEEEecCC--CCC----------C--Cceee-----eccceEEEeecCCCCeEEEEE
Q psy7616          21 TVRKGGTITLECKASGN--PVPSIIWSKKDS--SLP----------S--GEKSL-----EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~--~~~----------~--~~~~~-----~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+..|+++.|.|...+.  ....+.|++...  .+.          .  ..+..     ....|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46789999999987654  445699998432  110          0  00110     223588999999999999998


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      +.+
T Consensus        82 ~~~   84 (98)
T cd04984          82 VWD   84 (98)
T ss_pred             Ecc
Confidence            764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.12  E-value=4.8e-06  Score=44.96  Aligned_cols=38  Identities=16%  Similarity=0.264  Sum_probs=31.4

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...+|.|.+++.+|+|.|+|.+....|......+.|.|
T Consensus        55 ~~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~v   92 (92)
T cd05741          55 PNGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLRV   92 (92)
T ss_pred             CCceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEEC
Confidence            34789999999999999999999988766566676654

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=98.11  E-value=3.4e-06  Score=45.87  Aligned_cols=29  Identities=17%  Similarity=0.345  Sum_probs=25.8

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      ..++|.+.+++.+|+|.|+|.|+|.....
T Consensus        58 ~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          58 TNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            46789999999999999999999997654

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.10  E-value=5.9e-05  Score=39.91  Aligned_cols=59  Identities=20%  Similarity=0.344  Sum_probs=36.7

Q ss_pred             EEEEEeecCC-CCCceEEEecCCCCCCCcee---------eeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          28 ITLECKASGN-PVPSIIWSKKDSSLPSGEKS---------LEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        28 ~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      +.|.|.+.+. |.+.+.|++++..+......         .-.+.+.+......+.+.|.|.+.+....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            5789998664 77899999998876432110         01112333333334456899999986544

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.10  E-value=8.3e-06  Score=45.24  Aligned_cols=39  Identities=15%  Similarity=0.202  Sum_probs=31.6

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...++|.|.+++.+|+|.|+|.+.+.-.......+.|.|
T Consensus        67 ~~ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          67 YPNGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             eCCCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence            445689999999999999999999987545466677665

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.07  E-value=6.7e-06  Score=44.96  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=28.0

Q ss_pred             CCceEEeecCCCC-CeEEEEEeecCCCCCcCeeeEE
Q psy7616         110 GFSITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       110 ~~~~~l~~~~~~d-~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      ...|.+.++..+| .|.|.|.|.|.+|.. ...++|
T Consensus        63 ~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d-~~~i~L   97 (98)
T cd05898          63 LSTLTINNIMEADFQTHYNCTAWNSFGSG-TAIIQL   97 (98)
T ss_pred             EEEEEECCCccccCCcEEEEEEEeCCccc-eEEEEe
Confidence            3467888988877 799999999999988 767665

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.05  E-value=8.9e-06  Score=44.32  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=27.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...|.+.+++.+|+|.|+|.+... - ..+..++|.|
T Consensus        61 ~~~L~I~nV~~~D~G~YtC~~~t~-~-~~~~~~~~~v   95 (95)
T cd05882          61 ELIISISNVQLSDEGEYTCSIFTM-P-VRTAKATVTV   95 (95)
T ss_pred             eEEEEECCCCcccCEEEEEEEEee-c-cccEEEEEEC
Confidence            457889999999999999999883 2 2255666654

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.04  E-value=1.4e-05  Score=43.70  Aligned_cols=39  Identities=31%  Similarity=0.401  Sum_probs=32.3

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecC-CCCCcCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNG-VGDPVTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~-~g~~~~~~~~l~V~  147 (147)
                      ....+|.|.+++.+|+|.|+|...+. .|.. +..+.|+|+
T Consensus        58 ~~~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~-~~~~~L~v~   97 (97)
T cd05846          58 LNSTSITIWNVTLEDEGCYKCIFNTFPDGSK-SGTMCLTVY   97 (97)
T ss_pred             CCccEEEEeCCceeeeEEEEEEEEeCCCCCe-eeEEEEEEC
Confidence            34567999999999999999998754 5665 889999985

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.02  E-value=1.2e-05  Score=43.86  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=27.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+|.+.+++.+|+|.|+|.+.+..+ . +..+.|.|
T Consensus        61 ~~sL~I~~v~~~DsG~Y~C~~~t~~~-~-~~~~~l~v   95 (95)
T cd07701          61 ELSISISDVSLSDEGQYTCSLFTMPV-K-TSKAYLTV   95 (95)
T ss_pred             cEEEEECcCCcccCEEEEEEeEeecC-c-cEEEEEEC
Confidence            35688999999999999999998533 3 56677665

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=97.99  E-value=1.5e-05  Score=43.55  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=31.1

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.|..++.+|+|.|+|.|.|..+.. +.++.|.|
T Consensus        65 S~L~L~Rlk~~E~G~YTf~a~N~~~~~-s~tF~l~v   99 (101)
T cd05860          65 SELHLTRLKGTEGGTYTFLVSNSDASA-SVTFNVYV   99 (101)
T ss_pred             EEEEEeecChhhCcEEEEEEECCCCeE-EEEEEEEE
Confidence            457889999999999999999999988 88888876

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.99  E-value=0.00018  Score=38.11  Aligned_cols=59  Identities=20%  Similarity=0.387  Sum_probs=37.4

Q ss_pred             EEEEEeecCC-CCCceEEEecCCCCCCCce-e--ee-------ccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          28 ITLECKASGN-PVPSIIWSKKDSSLPSGEK-S--LE-------GFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        28 ~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~-~--~~-------~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      +.|.|.+.+. |...|.|++++..+..... .  ..       .+.+.+......+...|.|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            5789998764 7789999999877643221 1  11       122333333344557899999986543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.99  E-value=1.6e-05  Score=44.57  Aligned_cols=36  Identities=28%  Similarity=0.610  Sum_probs=30.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+|+|++++.+|+|.|.|.+....+.. ...+.|.|
T Consensus        71 ~asL~I~~l~~sD~G~Y~C~v~~~~~~~-~~~v~l~V  106 (110)
T cd05878          71 DASLEISRLRSSDSGVYRCEVMHGIEDE-QDTVPLEV  106 (110)
T ss_pred             cEEEEECCCChhhCEEEEEEEEeCCCcc-eEEEEEEE
Confidence            4568999999999999999998875555 77888876

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd00098 IgC Immunoglobulin Constant domain

Probab=97.97  E-value=2.7e-05  Score=42.26  Aligned_cols=63  Identities=29%  Similarity=0.501  Sum_probs=42.1

Q ss_pred             eeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce-----eee------ccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          23 RKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK-----SLE------GFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-----~~~------~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      ..|+.+.|.|.+.+. |. ..+.|++++..+.....     ...      .+.|.+......+.+.|.|.+.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            368899999999887 43 57999999877643321     011      12344444444588999999988643

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.97  E-value=8.6e-05  Score=40.49  Aligned_cols=34  Identities=12%  Similarity=0.283  Sum_probs=25.9

Q ss_pred             ccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      ..+|.|.+++.+|+|.|.|.+.........+.+.
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~   92 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIE   92 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEE
Confidence            3578999999999999999998755443455543

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.96  E-value=2.2e-05  Score=44.20  Aligned_cols=36  Identities=33%  Similarity=0.637  Sum_probs=31.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+|.|.+++.+|+|.|.|.+.+..... ...+.|.|
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~-~~~v~L~V  113 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDT-QDTVSLDV  113 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCccc-EEEEEEEE
Confidence            4568889999999999999999987766 77888876

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>smart00410 IG_like Immunoglobulin like

Probab=97.95  E-value=2.8e-05  Score=40.75  Aligned_cols=36  Identities=36%  Similarity=0.634  Sum_probs=30.4

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+.+.+++.+|+|.|+|.+.+..+.. ...+.|.|+
T Consensus        51 ~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~~l~V~   86 (86)
T smart00410       51 STLTISNVTPEDSGTYTCAATNSSGSA-SSTTTLTVL   86 (86)
T ss_pred             eEEEEEeeccccCeEEEEEEEcCCCeE-EEEEEEEEC
Confidence            468889999999999999999888877 555888774

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=97.95  E-value=2.8e-05  Score=40.75  Aligned_cols=36  Identities=36%  Similarity=0.634  Sum_probs=30.4

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+.+.+++.+|+|.|+|.+.+..+.. ...+.|.|+
T Consensus        51 ~~l~i~~~~~~d~G~Y~C~v~~~~~~~-~~~~~l~V~   86 (86)
T smart00409       51 STLTISNVTPEDSGTYTCAATNSSGSA-SSTTTLTVL   86 (86)
T ss_pred             eEEEEEeeccccCeEEEEEEEcCCCeE-EEEEEEEEC
Confidence            468889999999999999999888877 555888774

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=97.95  E-value=2.2e-05  Score=42.68  Aligned_cols=35  Identities=26%  Similarity=0.374  Sum_probs=27.7

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...|.+.+++.+|+|.|+|.+.+... . +....|+|
T Consensus        61 ~~~L~I~~v~~~DsG~Y~C~~~~~~~-~-~~~~~~~v   95 (95)
T cd05717          61 ELSISISNVSLSDEGRYTCSLYTMPV-Q-TAKATVTV   95 (95)
T ss_pred             eeEEEEccCCcccCEEEEEEEecCCC-c-eEEEEEEC
Confidence            34688999999999999999997753 3 56666765

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=97.94  E-value=2e-05  Score=38.84  Aligned_cols=27  Identities=33%  Similarity=0.694  Sum_probs=23.6

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      ....|.+.+++.+|+|.|+|.+.|..|
T Consensus        37 ~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408       37 SGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            355788999999999999999999865

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=97.91  E-value=0.00015  Score=40.90  Aligned_cols=64  Identities=20%  Similarity=0.431  Sum_probs=44.2

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEecCC--CC-----------C--CCce-ee-----eccceEEEeecCCCCeEE
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKKDS--SL-----------P--SGEK-SL-----EGFSITLEKVDRHQAGVY   76 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~--~~-----------~--~~~~-~~-----~~~~l~~~~~~~~~~g~y   76 (147)
                      .+.+..|+++.|+|..... ....+.|++...  .+           .  ..+. ..     ....|.|.+++..|+|.|
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Dsg~Y   87 (116)
T cd07706           8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLEDSAKY   87 (116)
T ss_pred             ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHHCEEE
Confidence            5678899999999987653 345699998431  10           0  0111 11     123688999999999999


Q ss_pred             EEEeec
Q psy7616          77 QCTATN   82 (147)
Q Consensus        77 ~C~~~~   82 (147)
                      .|.+..
T Consensus        88 ~C~~~~   93 (116)
T cd07706          88 FCALST   93 (116)
T ss_pred             EEEEEC
Confidence            999875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00096 Ig Immunoglobulin domain

Probab=97.91  E-value=7e-05  Score=37.43  Aligned_cols=56  Identities=39%  Similarity=0.707  Sum_probs=40.7

Q ss_pred             EEEEeecCCCCCceEEEecCCCCCCCc---------eeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          29 TLECKASGNPVPSIIWSKKDSSLPSGE---------KSLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        29 ~l~C~~~~~~~~~v~w~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .+.|...+.+...+.|++.+.......         .......+.+.++...|.|.|.|.+.+..
T Consensus         2 ~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           2 TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            678998876677899999775543211         12344467888888899999999987754

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=97.87  E-value=1.3e-05  Score=41.84  Aligned_cols=34  Identities=26%  Similarity=0.601  Sum_probs=28.5

Q ss_pred             eEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         113 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +.+.+++.+|.|.|+|.|.+..+...+..++|.|
T Consensus        47 ~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   47 LFIPNVSPEDSGNYTCRASNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EEESSEEGGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eeeeeeccccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence            5667899999999999999977655688888876

...

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=97.86  E-value=0.00028  Score=38.57  Aligned_cols=64  Identities=25%  Similarity=0.381  Sum_probs=43.8

Q ss_pred             EEeeCCeEEEEEeecCC-CCCceEEEecCCCCC--------------CCce-e-----eeccceEEEeecCCCCeEEEEE
Q psy7616          21 TVRKGGTITLECKASGN-PVPSIIWSKKDSSLP--------------SGEK-S-----LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~--------------~~~~-~-----~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+..|++++|.|..... ....+.|++......              .... .     .....|.|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            67899999999987542 455689998542110              0011 1     1223688999999999999998


Q ss_pred             eecCC
Q psy7616          80 ATNGV   84 (147)
Q Consensus        80 ~~~~~   84 (147)
                      +....
T Consensus        83 ~~~~~   87 (98)
T cd05716          83 VGDDG   87 (98)
T ss_pred             cccCC
Confidence            87643

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.85  E-value=0.00018  Score=38.12  Aligned_cols=58  Identities=19%  Similarity=0.327  Sum_probs=36.7

Q ss_pred             EEEEEeecC-CCCCceEEEecCCCCCCCcee----------eeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          28 ITLECKASG-NPVPSIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        28 ~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      +.|.|.+.+ .|...+.|++++..+......          ...+.+.+......+...|.|.+.+..-
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l   70 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESL   70 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhc
Confidence            578999876 466779999999876432211          1122344443334455679999988543

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.84  E-value=0.0002  Score=39.86  Aligned_cols=62  Identities=21%  Similarity=0.449  Sum_probs=41.3

Q ss_pred             EEeeCCeEEEEEeecCC-CCCceEEEecCCC---CC--------------------CCcee---e---eccceEEEeecC
Q psy7616          21 TVRKGGTITLECKASGN-PVPSIIWSKKDSS---LP--------------------SGEKS---L---EGFSITLEKVDR   70 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~---~~--------------------~~~~~---~---~~~~l~~~~~~~   70 (147)
                      .+..|++++|.|..... ....+.|++....   ..                    .....   .   ....|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46789999999987653 3456999984321   00                    00010   0   112488999999


Q ss_pred             CCCeEEEEEeec
Q psy7616          71 HQAGVYQCTATN   82 (147)
Q Consensus        71 ~~~g~y~C~~~~   82 (147)
                      +|+|.|.|....
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999998753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.84  E-value=7.4e-05  Score=41.40  Aligned_cols=28  Identities=14%  Similarity=0.360  Sum_probs=21.9

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecC
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKD   48 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~   48 (147)
                      .+..|++++|.|.........+.|++..
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~   29 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQP   29 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeC
Confidence            4578999999998765445679999865

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=97.72  E-value=5.6e-05  Score=40.43  Aligned_cols=26  Identities=19%  Similarity=0.285  Sum_probs=22.7

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      .++.|.|.+++.+|+|.|+|.|.+..
T Consensus        46 ~~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873          46 YRDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             ECCcEEEeCCCHHHCEEEEEEEEecc
Confidence            34568999999999999999998874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.71  E-value=0.00012  Score=39.86  Aligned_cols=34  Identities=18%  Similarity=0.372  Sum_probs=26.2

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecC-CCCCcCeeeE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNG-VGDPVTVDMT  143 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~-~g~~~~~~~~  143 (147)
                      ...+|.|.+++.+|.|.|+|.+.+- .|.. +..++
T Consensus        58 ~d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~-~~~i~   92 (96)
T cd05889          58 EDMSLSFNNATEEDVGLYCCSLVTYPQGSW-EKVIE   92 (96)
T ss_pred             CccEEEEcCCCcccCEEEEEEEEeCCCCCe-EEEEE
Confidence            3567899999999999999999766 4544 44443

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PHA03376 BARF1; Provisional

Probab=97.70  E-value=0.00082  Score=40.89  Aligned_cols=66  Identities=20%  Similarity=0.224  Sum_probs=44.9

Q ss_pred             ceEEeeCCeEEEEEeecCC---CCCceEEEecCC----CCC------------CCc-e--e---eeccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASGN---PVPSIIWSKKDS----SLP------------SGE-K--S---LEGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~---~~~~v~w~~~~~----~~~------------~~~-~--~---~~~~~l~~~~~~~~~~   73 (147)
                      .+....|+++.|.|.....   ..-.|.|++.+.    .+-            .++ .  .   .++.+|.|.++..+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            3467889999999986522   234599999542    100            000 0  1   2445788999999999


Q ss_pred             eEEEEEeecCC
Q psy7616          74 GVYQCTATNGV   84 (147)
Q Consensus        74 g~y~C~~~~~~   84 (147)
                      |+|+|......
T Consensus       100 GtY~C~fQkge  110 (221)
T PHA03376        100 GNYLCRMKLGE  110 (221)
T ss_pred             ceEEEEEEcCC
Confidence            99999998654

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.69  E-value=0.00067  Score=38.53  Aligned_cols=65  Identities=18%  Similarity=0.291  Sum_probs=43.2

Q ss_pred             ceEEeeCCeEEEEEeecCCC------CCceEEEecCCC----C-------CC-------Cc-ee-----eeccceEEEee
Q psy7616          19 QLTVRKGGTITLECKASGNP------VPSIIWSKKDSS----L-------PS-------GE-KS-----LEGFSITLEKV   68 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~------~~~v~w~~~~~~----~-------~~-------~~-~~-----~~~~~l~~~~~   68 (147)
                      .+.+..|+.++|+|......      ...+.|++....    .       ..       .+ ..     .....|.|.++
T Consensus         8 ~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I~~l   87 (119)
T cd05712           8 SVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLISDA   87 (119)
T ss_pred             EEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEEccC
Confidence            56888999999999764221      245899985321    0       00       00 00     12236899999


Q ss_pred             cCCCCeEEEEEeecC
Q psy7616          69 DRHQAGVYQCTATNG   83 (147)
Q Consensus        69 ~~~~~g~y~C~~~~~   83 (147)
                      +..|+|.|.|.+...
T Consensus        88 ~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          88 QPEDSGKYFFRVELG  102 (119)
T ss_pred             ChhhCeEEEEEEEcC
Confidence            999999999988653

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=97.68  E-value=8.2e-05  Score=40.18  Aligned_cols=36  Identities=25%  Similarity=0.387  Sum_probs=27.9

Q ss_pred             CceEEeecCCCCCeEEEEEeecCC-C-CCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGV-G-DPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~-g-~~~~~~~~l~V  146 (147)
                      ..+.|.+++.+|+|.|+|.+.+.. + +..+..+.|.|
T Consensus        53 ~~f~i~~v~~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V   90 (91)
T cd05751          53 AKFFIPSMKREHAGRYRCYYRSGVALWSEPSDPLELVV   90 (91)
T ss_pred             EEEEccCCChhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence            457889999999999999999873 2 33466677766

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=97.66  E-value=2.6e-05  Score=42.35  Aligned_cols=26  Identities=12%  Similarity=0.455  Sum_probs=23.0

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGD  136 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~  136 (147)
                      .+|++.+++.+|+|.|+|.+.|..+.
T Consensus        65 ~~L~I~~l~~sDsgtY~C~v~~~~~~   90 (94)
T cd07690          65 FPLIIKNLKIEDSDTYICEVEDKKEE   90 (94)
T ss_pred             EEEEECCCCHHHCEEEEEEECCccce
Confidence            46999999999999999999988654

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.63  E-value=0.00063  Score=34.01  Aligned_cols=53  Identities=30%  Similarity=0.473  Sum_probs=35.6

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +...|..++|.|+..+.   .+.|.+++..+..     ....+.+.+-. +++|.|.|.+.+
T Consensus         3 VsisGTtVtlTCP~~~~---~i~W~~n~~~~~g-----~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           3 VSISGTTVTVTCPLSGD---DIKWKKNDQVSQG-----SDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EEEeccEEEEECCCCCC---CceEEeCCccCCC-----CCceEEeeccC-CCCceEEEEeCC
Confidence            34678999999975432   2899999855543     11233344444 789999998854

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.60  E-value=0.00093  Score=36.19  Aligned_cols=72  Identities=19%  Similarity=0.391  Sum_probs=42.5

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC-ceEEEecCCCCCCCc----ee-eeccceE---EEeecCCCCeEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP-SIIWSKKDSSLPSGE----KS-LEGFSIT---LEKVDRHQAGVYQ   77 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~~----~~-~~~~~l~---~~~~~~~~~g~y~   77 (147)
                      ||.+.+.+...  .   ++...|.|.+.+. |.. .+.|.+++..+....    .. ...+...   .-.+...+...|.
T Consensus         2 pP~v~v~~~~~--~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~yt   76 (93)
T cd07698           2 PPEVRVTRKRA--P---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYS   76 (93)
T ss_pred             CCEEEEEecCC--C---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEE
Confidence            67776665532  1   6789999999885 443 789999985321111    11 1111111   1233445778899


Q ss_pred             EEeecCC
Q psy7616          78 CTATNGV   84 (147)
Q Consensus        78 C~~~~~~   84 (147)
                      |.+.+..
T Consensus        77 C~V~H~~   83 (93)
T cd07698          77 CRVEHSG   83 (93)
T ss_pred             EEEEeCC
Confidence            9998754

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=97.57  E-value=6.5e-05  Score=37.53  Aligned_cols=18  Identities=28%  Similarity=0.741  Sum_probs=17.1

Q ss_pred             eEEeecCCCCCeEEEEEe
Q psy7616         113 ITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a  130 (147)
                      |.|.+++.+|+|.|+|.|
T Consensus        47 L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen   47 LTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             EEESSCTGGGTEEEEEEE
T ss_pred             EEEccCCHHHCEEEEEEC
Confidence            889999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.57  E-value=0.00054  Score=38.43  Aligned_cols=78  Identities=14%  Similarity=0.304  Sum_probs=44.0

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce-e--ee-------ccceEEEeecCCC
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK-S--LE-------GFSITLEKVDRHQ   72 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-~--~~-------~~~l~~~~~~~~~   72 (147)
                      ++.+|...+.... ......|+.++|.|.+.+. |. ..+.|++++..+..... .  ..       .+.|.+. +...|
T Consensus         2 v~~~P~~p~i~~~-~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~-~~~~d   79 (111)
T cd05772           2 VRAKPSVPVVSGP-SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVK-LTEDD   79 (111)
T ss_pred             cccCCCCcEeCCc-hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEE-Ccccc
Confidence            3456655443322 1134578889999999885 43 46999999977643211 0  01       1122222 23333


Q ss_pred             Ce-EEEEEeecCC
Q psy7616          73 AG-VYQCTATNGV   84 (147)
Q Consensus        73 ~g-~y~C~~~~~~   84 (147)
                      .+ .|.|.+.+..
T Consensus        80 ~~~~ytC~V~H~~   92 (111)
T cd05772          80 VHSQVTCEVQHRT   92 (111)
T ss_pred             ccCceEEEEEeCC
Confidence            33 4999998854

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.57  E-value=0.00024  Score=39.08  Aligned_cols=76  Identities=26%  Similarity=0.472  Sum_probs=43.0

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-C-CCceEEEecCCCCCCCce----e-eecc------ceEEEeecCCCCe
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-P-VPSIIWSKKDSSLPSGEK----S-LEGF------SITLEKVDRHQAG   74 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~w~~~~~~~~~~~~----~-~~~~------~l~~~~~~~~~~g   74 (147)
                      ||.+.+.+++. .....++..+|.|.+.+. | ...+.|++++..+.....    . ...+      .|.+......+..
T Consensus         1 pP~V~v~~p~~-~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~   79 (100)
T cd07699           1 APSVTIFPPSS-EELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHK   79 (100)
T ss_pred             CCeEEEECCCH-HHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCC
Confidence            45555554432 133456789999998874 3 346899999877642211    1 1112      2223222222356


Q ss_pred             EEEEEeecCC
Q psy7616          75 VYQCTATNGV   84 (147)
Q Consensus        75 ~y~C~~~~~~   84 (147)
                      .|.|.+.+..
T Consensus        80 ~~sC~V~H~~   89 (100)
T cd07699          80 VYTCEVTHEG   89 (100)
T ss_pred             eEEEEEEecC
Confidence            7999998754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=97.50  E-value=0.00011  Score=39.95  Aligned_cols=30  Identities=13%  Similarity=0.103  Sum_probs=25.6

Q ss_pred             ccCCceEEeecCCCCCe-EEEEEeecCCCCC
Q psy7616         108 LEGFSITLEKVDRHQAG-VYQCTATNGVGDP  137 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G-~Y~C~a~n~~g~~  137 (147)
                      ...++|.+.+++.+|+| .|.|.|.|.....
T Consensus        55 ~~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          55 GQNGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             CCCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence            34588999999999999 8999999997544

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.48  E-value=0.0022  Score=36.37  Aligned_cols=64  Identities=23%  Similarity=0.424  Sum_probs=42.5

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCC--CC---------------C---CCce-ee--e---ccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDS--SL---------------P---SGEK-SL--E---GFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~--~~---------------~---~~~~-~~--~---~~~l~~~~~~~   70 (147)
                      .+.+..|++++|.|......  ...+.|++-..  .+               .   .... ..  .   ...|.|.++..
T Consensus         6 ~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   85 (117)
T cd04981           6 PGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNSLTP   85 (117)
T ss_pred             CeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECCCCH
Confidence            45889999999999865432  45689998432  11               0   0000 10  1   12588899999


Q ss_pred             CCCeEEEEEeec
Q psy7616          71 HQAGVYQCTATN   82 (147)
Q Consensus        71 ~~~g~y~C~~~~   82 (147)
                      +|+|.|.|....
T Consensus        86 ~Dsa~YyCa~~~   97 (117)
T cd04981          86 EDTAVYYCARGL   97 (117)
T ss_pred             HHCEEEEEEEEc
Confidence            999999998754

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=97.47  E-value=0.00012  Score=37.52  Aligned_cols=25  Identities=32%  Similarity=0.638  Sum_probs=21.4

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeec
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .....|.+.++..+|.|.|+|.|.|
T Consensus        51 ~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   51 SSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             ceeeEEEEccCCHHhCcEEEEEEEC
Confidence            3455688899999999999999987

...

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.46  E-value=0.00044  Score=37.03  Aligned_cols=61  Identities=21%  Similarity=0.427  Sum_probs=37.8

Q ss_pred             CCeEEEEEee-cCCCCCceEEEecCCCCCCCce----------eeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          25 GGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        25 g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      |+.+.+.|.+ .+.|.+.+.|+.++..+.....          ..-.+.|.+..-...+...+.|.+.+...
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~   85 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPAL   85 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCcc
Confidence            5799999975 4568889999999876621110          11122344443333456778999988643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=97.45  E-value=0.0003  Score=37.45  Aligned_cols=37  Identities=16%  Similarity=0.306  Sum_probs=25.6

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      ....+.+..++.+|+|.|.|.+. +.|.. .-..+.|.|
T Consensus        45 ~~~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~l~v   82 (85)
T cd05872          45 GTDGLLILVTSPEHSGTYRCYSE-EEGFQQLVASYSLNV   82 (85)
T ss_pred             eCCCCEEEECCHhhCEEEEEEEe-cCCCeEEEEEEEEEE
Confidence            34457789999999999999986 44544 233344444

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.40  E-value=0.0015  Score=33.82  Aligned_cols=57  Identities=23%  Similarity=0.403  Sum_probs=33.8

Q ss_pred             EEEEEeecCC-CC-CceEEEecCCCCCCCce-----------eeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          28 ITLECKASGN-PV-PSIIWSKKDSSLPSGEK-----------SLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        28 ~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      ++|.|.+.+. |. ..+.|++++..+.....           ....+.|.+......+...|.|.+.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            5789998885 44 47999999875322111           0111223333334456678999987643

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=97.38  E-value=0.00044  Score=37.65  Aligned_cols=33  Identities=21%  Similarity=0.314  Sum_probs=24.2

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +|.+++++.+|+|.|+|.+....-  .+...+++|
T Consensus        63 tL~I~~vq~~D~G~Y~Cqv~t~p~--~~~~~~~~~   95 (95)
T cd05881          63 RVSLSNVSLSDEGRYFCQLYTDPP--QEAYTTITV   95 (95)
T ss_pred             EEEECcCCcccCEEEEEEEEcccC--eEEEEEEEC
Confidence            478899999999999999976422  244555543

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.37  E-value=0.00059  Score=37.67  Aligned_cols=31  Identities=23%  Similarity=0.384  Sum_probs=22.9

Q ss_pred             EeeCCeEEEEEeecCCCCC--ceEEEecCCCCC
Q psy7616          22 VRKGGTITLECKASGNPVP--SIIWSKKDSSLP   52 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~~~~--~v~w~~~~~~~~   52 (147)
                      +..+..++|.|.+.+..+.  .+.|.+++..+.
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~   45 (102)
T cd05768          13 LSLQETATLTCLVKGFSPSDIFVKWLQNGQPLS   45 (102)
T ss_pred             hCcCCceEEEEEEeeEeCCCCEEEEEECCEECC
Confidence            3456789999999885333  479999987653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.33  E-value=0.003  Score=34.33  Aligned_cols=71  Identities=18%  Similarity=0.337  Sum_probs=40.9

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCcee-----e------eccceEEEeecCCCCe
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEKS-----L------EGFSITLEKVDRHQAG   74 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~~-----~------~~~~l~~~~~~~~~~g   74 (147)
                      ||.+.+.+..   ....+...+|.|.+.+. |. ..+.|.+++..+......     .      ....|.+   ...+..
T Consensus         1 ~P~V~v~~~~---~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~   74 (94)
T cd05767           1 PPEVTVFSLK---PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGD   74 (94)
T ss_pred             CCEEEEEeCC---cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCC
Confidence            4555444332   23346667999999885 43 358999998876432110     1      1112322   234556


Q ss_pred             EEEEEeecCC
Q psy7616          75 VYQCTATNGV   84 (147)
Q Consensus        75 ~y~C~~~~~~   84 (147)
                      .|.|.+.+..
T Consensus        75 ~ytC~V~H~~   84 (94)
T cd05767          75 IYSCIVEHWG   84 (94)
T ss_pred             eEEEEEEeCC
Confidence            7999998753

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.28  E-value=0.0045  Score=33.63  Aligned_cols=62  Identities=15%  Similarity=0.285  Sum_probs=37.0

Q ss_pred             eeCCeEEEEEeecCC-CCC-ceEEEecCCCCCCCce---e--eeccceEE---EeecCCCCeEEEEEeecCC
Q psy7616          23 RKGGTITLECKASGN-PVP-SIIWSKKDSSLPSGEK---S--LEGFSITL---EKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~~~---~--~~~~~l~~---~~~~~~~~g~y~C~~~~~~   84 (147)
                      ..|+..+|.|.+.+. |.. .+.|.+++..+.....   .  ...+...+   -.+...+...|.|.+.+..
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            467889999999885 333 5899999877543211   1  11111111   1223345567999998754

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=97.26  E-value=0.00061  Score=37.37  Aligned_cols=40  Identities=20%  Similarity=0.397  Sum_probs=33.4

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+...|.++.++.+|+|.|.-++.+..|......+++.|+
T Consensus        68 ~enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   68 SENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             TTTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             ccCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            4566788899999999999999999999888888999885

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.26  E-value=0.002  Score=36.38  Aligned_cols=78  Identities=19%  Similarity=0.364  Sum_probs=43.4

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce-----ee-------eccceEEEeecCCC-
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK-----SL-------EGFSITLEKVDRHQ-   72 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-----~~-------~~~~l~~~~~~~~~-   72 (147)
                      +|.+.+-+++. ..+..++.++|.|.+.+. |. ..+.|.+++..+.....     ..       -.+.|.+...+..+ 
T Consensus         2 ~P~V~v~~ps~-~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~   80 (115)
T cd05769           2 PPTVAIFPPSE-AEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNP   80 (115)
T ss_pred             CCEEEEECcCh-HHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccC
Confidence            45555444432 233356778999999885 43 36899999876543211     11       11223333222222 


Q ss_pred             CeEEEEEeecCCCC
Q psy7616          73 AGVYQCTATNGVGD   86 (147)
Q Consensus        73 ~g~y~C~~~~~~~~   86 (147)
                      ...|.|.+.+....
T Consensus        81 ~~~ytC~V~H~g~~   94 (115)
T cd05769          81 RNTFTCIVQFYGGT   94 (115)
T ss_pred             CCeEEEEEEEeCCc
Confidence            45799999886443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.25  E-value=0.004  Score=33.76  Aligned_cols=61  Identities=16%  Similarity=0.292  Sum_probs=37.1

Q ss_pred             eeCCeEEEEEeecCCCC--CceEEEecCCCCCCCcee-----eeccceEEE---eecCCCCeEEEEEeecCC
Q psy7616          23 RKGGTITLECKASGNPV--PSIIWSKKDSSLPSGEKS-----LEGFSITLE---KVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~~-----~~~~~l~~~---~~~~~~~g~y~C~~~~~~   84 (147)
                      ..|...+|.|.+.+.-+  ..+.|.+++..+. ....     .......+.   .+...+...|.|.+.+..
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            35666789999988533  3589999998765 2211     111222221   234556667999998743

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=97.22  E-value=0.00072  Score=35.53  Aligned_cols=35  Identities=14%  Similarity=0.277  Sum_probs=26.4

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCC--cCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDP--VTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~--~~~~~~l~V  146 (147)
                      .|.+...+..|.+.|+|.|.|+.+..  ......|.|
T Consensus        44 ~L~~~~~~~Ddg~~~~C~A~n~a~~~~~~~~~~~l~V   80 (80)
T cd05885          44 TIRFPVDRKDDGAILSCEASHPALVSQKKQTQYSLDV   80 (80)
T ss_pred             EEEEEeeeccCCcEEEEEEEChhhCCCCeeEEEEEeC
Confidence            46677778888999999999998754  345566654

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=97.21  E-value=0.0011  Score=40.34  Aligned_cols=39  Identities=18%  Similarity=0.294  Sum_probs=30.9

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCC-CCCcCeeeEEEE
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGV-GDPVTVDMTLEV  146 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~-g~~~~~~~~l~V  146 (147)
                      .....+++.+++.+|+|.|+|....-. |..++....|+|
T Consensus        82 ~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtV  121 (189)
T PHA02987         82 FNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNV  121 (189)
T ss_pred             CCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEE
Confidence            346789999999999999999996553 634477888876

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=97.18  E-value=0.00029  Score=38.89  Aligned_cols=25  Identities=24%  Similarity=0.607  Sum_probs=22.3

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      ..|.|.+++.+|+|.|.|.+.+..+
T Consensus        67 ~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          67 FTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCC
Confidence            4688899999999999999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=97.16  E-value=0.0013  Score=36.47  Aligned_cols=73  Identities=26%  Similarity=0.512  Sum_probs=48.6

Q ss_pred             eCCeEEEEEeecCCC------CCceEEEecC--C-CC-------CCC------c--e------eeeccceEEEeecCCCC
Q psy7616          24 KGGTITLECKASGNP------VPSIIWSKKD--S-SL-------PSG------E--K------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus        24 ~g~~~~l~C~~~~~~------~~~v~w~~~~--~-~~-------~~~------~--~------~~~~~~l~~~~~~~~~~   73 (147)
                      .|++++|+|.....+      ...+.|++..  . ..       ...      .  +      .....+|.|.+++..|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            378999999976532      4579999963  1 10       000      0  0      01244789999999999


Q ss_pred             eEEEEEeecCCCCceEEeEEEEEe
Q psy7616          74 GVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        74 g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      |.|.|.+.+..+.. ...+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~-~~~v~L~V~  103 (106)
T cd05714          81 GRYRCEVIDGIEDE-QDTVELEVR  103 (106)
T ss_pred             EEEEEEEEcCCCce-EEEEEEEEE
Confidence            99999998865543 566666654

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=97.14  E-value=0.00062  Score=37.86  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=21.6

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      ..|.|.+++.+|+|.|.|.+.+..+
T Consensus        70 ~~L~I~~~~~~DsG~Y~C~~~~~~~   94 (109)
T cd04983          70 SSLHISAAQLSDSAVYFCALSESGG   94 (109)
T ss_pred             EEEEECCCCHHHCEEEEEEEecCCC
Confidence            4688899999999999999997643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.09  E-value=0.0024  Score=33.20  Aligned_cols=20  Identities=25%  Similarity=0.629  Sum_probs=16.7

Q ss_pred             cceEEEeecCCCCeEEEEEe
Q psy7616          61 FSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus        61 ~~l~~~~~~~~~~g~y~C~~   80 (147)
                      ..|.|.+++..|+|.|.|.+
T Consensus        62 ~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       62 VSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEcCCCHHHCEEEEEcC
Confidence            35888999999999999963

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=97.00  E-value=0.0037  Score=35.14  Aligned_cols=72  Identities=17%  Similarity=0.380  Sum_probs=46.5

Q ss_pred             eCCeEEEEEeecCCC------------CCceEEEecCC--CC-------------CC--Cce-e------eeccceEEEe
Q psy7616          24 KGGTITLECKASGNP------------VPSIIWSKKDS--SL-------------PS--GEK-S------LEGFSITLEK   67 (147)
Q Consensus        24 ~g~~~~l~C~~~~~~------------~~~v~w~~~~~--~~-------------~~--~~~-~------~~~~~l~~~~   67 (147)
                      .|++++|+|......            .+.+.|++...  +.             ..  ++. .      .....|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            378999999875422            35799998531  10             00  011 1      1355799999


Q ss_pred             ecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          68 VDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ++.+|+|.|.|.+.+..... .....|.|
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~-~~~v~l~v  108 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDN-YDTVEVQV  108 (112)
T ss_pred             cccccCEEEEEEEecCCCCc-eeEEEEEE
Confidence            99999999999998754443 44444544

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=96.98  E-value=0.0012  Score=36.02  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=20.0

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        63 ~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          63 ASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             EEEEECCCChhhCEEEEEEEccC
Confidence            35888999999999999999764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=96.97  E-value=0.0015  Score=34.38  Aligned_cols=34  Identities=21%  Similarity=0.382  Sum_probs=23.3

Q ss_pred             eEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         113 ITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      |.+......|.|.|+|.|.|..... ....++|+|
T Consensus        48 L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l~v   82 (82)
T cd05759          48 LPITPSDHDTGRTFTCRARNEALPTGKETSVTLDV   82 (82)
T ss_pred             EEEeCceecCCCEEEEEEcCccCCCCcEEEEEEcC
Confidence            4455556678889999999986433 355666654

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=96.96  E-value=0.00093  Score=36.46  Aligned_cols=25  Identities=28%  Similarity=0.569  Sum_probs=21.5

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      ..+|.+.+++.+|+|.|.|.+....
T Consensus        63 ~~~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          63 VFTVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             EEEEEEcCCCHHHCEEEEEEcccCC
Confidence            3568889999999999999997764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=96.95  E-value=0.0028  Score=35.09  Aligned_cols=73  Identities=25%  Similarity=0.474  Sum_probs=47.7

Q ss_pred             eCCeEEEEEeecCC------CCCceEEEecCCC-CC---------------C---Cce-e----eeccceEEEeecCCCC
Q psy7616          24 KGGTITLECKASGN------PVPSIIWSKKDSS-LP---------------S---GEK-S----LEGFSITLEKVDRHQA   73 (147)
Q Consensus        24 ~g~~~~l~C~~~~~------~~~~v~w~~~~~~-~~---------------~---~~~-~----~~~~~l~~~~~~~~~~   73 (147)
                      .|++++|.|.....      ....+.|++.... .+               .   .+. .    ....+|.|.+++..|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            37899999987543      2346999985421 00               0   000 1    1123689999999999


Q ss_pred             eEEEEEeecCCCCceEEeEEEEEe
Q psy7616          74 GVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        74 g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      |.|.|.+.+..+.. ...+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~-~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDE-SVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccce-EEEEEEEEE
Confidence            99999998765553 566666553

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=96.93  E-value=0.0016  Score=36.47  Aligned_cols=37  Identities=27%  Similarity=0.530  Sum_probs=28.2

Q ss_pred             ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ..+|.|.+++.+|+|.|.|.+....... ...+.|.|.
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~-~~~v~L~V~  107 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGINDE-QDTVPLEVT  107 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCccc-EEEEEEEEE
Confidence            3478999999999999999998755332 566666654

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.93  E-value=0.0095  Score=32.45  Aligned_cols=27  Identities=26%  Similarity=0.512  Sum_probs=21.0

Q ss_pred             eCCeEEEEEeecCCCC--CceEEEecCCC
Q psy7616          24 KGGTITLECKASGNPV--PSIIWSKKDSS   50 (147)
Q Consensus        24 ~g~~~~l~C~~~~~~~--~~v~w~~~~~~   50 (147)
                      .++.++|.|.+.+..+  ..|.|.+++..
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~   43 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS   43 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE
Confidence            4667899999988533  35899999875

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=96.86  E-value=0.0032  Score=35.63  Aligned_cols=68  Identities=19%  Similarity=0.309  Sum_probs=46.1

Q ss_pred             ceEEeeCCeEEEEEeecCC----CCCceEEEec---------------CCCCCCC-----cee-------eeccceEEEe
Q psy7616          19 QLTVRKGGTITLECKASGN----PVPSIIWSKK---------------DSSLPSG-----EKS-------LEGFSITLEK   67 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~----~~~~v~w~~~---------------~~~~~~~-----~~~-------~~~~~l~~~~   67 (147)
                      ++.+..|+.+.|.|.....    +...+.|...               +......     .+.       ....++.|.+
T Consensus         7 ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~n   86 (116)
T cd05879           7 EVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIHN   86 (116)
T ss_pred             eEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEcc
Confidence            5578899999999997553    2357999432               2211100     011       1334789999


Q ss_pred             ecCCCCeEEEEEeecCCCC
Q psy7616          68 VDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~~~~   86 (147)
                      ++..|.|.|.|.+.+....
T Consensus        87 v~~sD~G~Y~C~v~n~p~~  105 (116)
T cd05879          87 LDYTDNGTFTCDVKNPPDI  105 (116)
T ss_pred             CCcccCEEEEEEEEcCCCc
Confidence            9999999999999986653

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=96.84  E-value=0.0013  Score=36.44  Aligned_cols=23  Identities=30%  Similarity=0.683  Sum_probs=20.1

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.|.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          71 FTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             EEEEECCCChHHCEEEEEEEeCC
Confidence            35888999999999999999764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=96.82  E-value=0.027  Score=30.67  Aligned_cols=62  Identities=11%  Similarity=0.168  Sum_probs=35.1

Q ss_pred             eCCeEEEEEee-cCCCCCceEEEecCCCCCCCce-------eeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          24 KGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        24 ~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      ......+.|.+ .+.|.+.|.|+++.........       ..-.+.|.+......+...+.|++.+...
T Consensus        14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l   83 (95)
T cd05719          14 GEPVTVATCVSANGKPPATISWETTLGGEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTL   83 (95)
T ss_pred             CCccEEEEEECCCCcCCCEEEEEeCCCCcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence            34456788987 5678899999997211110000       11122344433333444569999988653

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.81  E-value=0.0063  Score=33.06  Aligned_cols=61  Identities=23%  Similarity=0.333  Sum_probs=35.5

Q ss_pred             eCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce-----eeecc------ceEEEeecCCCCeEEEEEeecCC
Q psy7616          24 KGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK-----SLEGF------SITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        24 ~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-----~~~~~------~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      ..+.+.|.|.+.+. |. ..+.|.+++..+.....     .....      .|.+......+...|.|.+.+..
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence            45668999999885 43 45899999877532211     11111      23232222234567999998753

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.80  E-value=0.0074  Score=32.95  Aligned_cols=29  Identities=10%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             EEeeCCeEEEEEeecCC-CCC--ceEEEecCC
Q psy7616          21 TVRKGGTITLECKASGN-PVP--SIIWSKKDS   49 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~-~~~--~v~w~~~~~   49 (147)
                      .+..|+..+|.|.+.+. .++  .+.|.++++
T Consensus        10 ~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~   41 (96)
T cd07696          10 QLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSG   41 (96)
T ss_pred             HhccCCCeEEEEEEeCCCCCCCcEEEEEECCe
Confidence            34568889999999887 333  489999864

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG3515|consensus

Probab=96.80  E-value=0.0075  Score=44.36  Aligned_cols=65  Identities=20%  Similarity=0.316  Sum_probs=41.8

Q ss_pred             eEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCCcee---------eeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          20 LTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKS---------LEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      ..+..|+...+.|.. .+.+...+.|+++..........         .......+......+.|.+.|.+.+..
T Consensus       310 ~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~  384 (741)
T KOG3515|consen  310 SGLSSGRSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLE  384 (741)
T ss_pred             cccccccccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccc
Confidence            457778888888875 45577789999966544321110         111123344556788899999998755

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.77  E-value=0.014  Score=31.85  Aligned_cols=61  Identities=23%  Similarity=0.383  Sum_probs=38.4

Q ss_pred             EEeeCCeEEEEEeecCC-CC--CceEEEecCCCCCCCceee---------eccceEEEeecCCCCe-EEEEEeec
Q psy7616          21 TVRKGGTITLECKASGN-PV--PSIIWSKKDSSLPSGEKSL---------EGFSITLEKVDRHQAG-VYQCTATN   82 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~-~~--~~v~w~~~~~~~~~~~~~~---------~~~~l~~~~~~~~~~g-~y~C~~~~   82 (147)
                      .+..|..+++.|.+.+. |.  ..+.|+++...+.......         ....+.|.. +++|.| .|.|++.-
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L   84 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKL   84 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEE
Confidence            35799999999998653 33  4588988776553322111         122344433 477776 69998864

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=96.76  E-value=0.0015  Score=36.48  Aligned_cols=25  Identities=24%  Similarity=0.497  Sum_probs=21.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      ...|.+.+++.+|+|.|.|.+.+..
T Consensus        71 ~~~L~I~~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          71 RSSLTIKSAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             ccEEEECCCChhhCEEEEEEeeCCC
Confidence            4568889999999999999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=96.73  E-value=0.0017  Score=36.10  Aligned_cols=22  Identities=18%  Similarity=0.579  Sum_probs=19.3

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|+|.+++.+|+|.|.|...+.
T Consensus        73 ~L~I~~~~~~Dsg~YyCa~~~~   94 (107)
T cd07700          73 RLHINRVKPEDSGTYFCMTVGS   94 (107)
T ss_pred             EEEECCCCHHHCEEEEEeEcCC
Confidence            5888999999999999998644

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PHA02633 hypothetical protein; Provisional

Probab=96.57  E-value=0.014  Score=28.88  Aligned_cols=40  Identities=13%  Similarity=0.285  Sum_probs=28.7

Q ss_pred             eccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEeee
Q psy7616          59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK   99 (147)
Q Consensus        59 ~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~   99 (147)
                      ....|.|-++..+|+|.|.|...+..... ...+.+.|...
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~-~~si~l~V~~~   55 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSD-MMKFDLCICLR   55 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeE-EEEEEEEEeec
Confidence            45568888999999999999998765443 44555655443

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=96.55  E-value=0.0055  Score=33.26  Aligned_cols=35  Identities=23%  Similarity=0.342  Sum_probs=24.1

Q ss_pred             ceEEeecCCCCCeEEEEEeecCC----CCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGV----GDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~----g~~~~~~~~l~V  146 (147)
                      .+.|..++.+|+|.|.|.+....    -+..|..+.|.|
T Consensus        56 ~f~I~~~~~~~~G~Y~C~~~~~~~~~~wS~~Sdpl~l~V   94 (94)
T cd05711          56 SFPLGPVTPAHAGTYRCYGSYNHSLYEWSAPSDPLKIVV   94 (94)
T ss_pred             EEEecCCCcccCEEEEEEEECCCCCccccCCCCCeEEeC
Confidence            45678999999999999975321    112366666654

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.52  E-value=0.017  Score=31.68  Aligned_cols=42  Identities=19%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCC---CCceEEEecCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP---VPSIIWSKKDSS   50 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~v~w~~~~~~   50 (147)
                      .|.+.+.+++.. .+..+..+.|.|.+.+.-   ...|.|.+++..
T Consensus         3 ~PsV~l~pPs~e-~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~   47 (99)
T cd04986           3 KPSLSLQRPALE-DLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK   47 (99)
T ss_pred             CCEEEEECcChH-HhCcCCccEEEEEEeccCCCCCeEEEEEECCcc
Confidence            455555444321 344678899999988744   235999998865

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.52  E-value=0.014  Score=29.57  Aligned_cols=50  Identities=20%  Similarity=0.466  Sum_probs=33.4

Q ss_pred             eCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616          24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        24 ~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      ..+.+.|.|..    ..++.|++ +..+...    .+..+.+......-.|.|.|.+.+
T Consensus         5 ~~~~V~L~C~~----~tsi~W~k-G~~~~~~----~~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           5 SEGKVFLKCNG----ATNITWKK-GKEILEV----SNTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             cCceEEEEecC----CCcEEEec-Ccccccc----cccEEeccCcccCCCcceEecCcc
Confidence            44578999955    24599999 4333211    144566666666778999998866

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>smart00406 IGv Immunoglobulin V-Type

Probab=96.48  E-value=0.0013  Score=34.20  Aligned_cols=21  Identities=24%  Similarity=0.600  Sum_probs=17.8

Q ss_pred             CCceEEeecCCCCCeEEEEEe
Q psy7616         110 GFSITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a  130 (147)
                      ..+|.|.+++.+|+|.|.|.+
T Consensus        61 ~~~L~i~~~~~~D~G~Y~C~v   81 (81)
T smart00406       61 DVSLTISNLRVEDTGTYYCAV   81 (81)
T ss_pred             EEEEEEcCCCHHHCEEEEEcC
Confidence            345888999999999999963

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.45  E-value=0.054  Score=29.50  Aligned_cols=59  Identities=14%  Similarity=0.188  Sum_probs=33.7

Q ss_pred             eEEEEEeec-CCCCCceEEEecCCCCCCCce-------eeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          27 TITLECKAS-GNPVPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        27 ~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      -+.+.|.+. +.|.+.|.|+++.........       ..-.+.|.+......+...+.|++.+...
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al   83 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGNANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETL   83 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCCeeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCccc
Confidence            467899865 668889999987322111010       01122344433333445569999998653

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.43  E-value=0.016  Score=31.60  Aligned_cols=31  Identities=19%  Similarity=0.297  Sum_probs=22.6

Q ss_pred             EeeCCeEEEEEeecCC-CC-CceEEEecCCCCC
Q psy7616          22 VRKGGTITLECKASGN-PV-PSIIWSKKDSSLP   52 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~   52 (147)
                      +..+...+|.|.+.+. |. ..+.|.+++..+.
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~   45 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGNSPSI   45 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECCEECc
Confidence            3345678999999885 33 3589999987653

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.36  E-value=0.064  Score=29.33  Aligned_cols=65  Identities=15%  Similarity=0.295  Sum_probs=37.5

Q ss_pred             eEEeeCCeEEE-EEee-cCCCCCceEEEecCCCCCCCc-e------eeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          20 LTVRKGGTITL-ECKA-SGNPVPSIIWSKKDSSLPSGE-K------SLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        20 ~~~~~g~~~~l-~C~~-~~~~~~~v~w~~~~~~~~~~~-~------~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      ..+..|+.+.+ .|.+ .+.|.+.+.|+.+........ .      ..-.+.+.+......+...+.|.+.+..
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSESHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccceeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            45667778777 8875 567889999997643221100 0      0111233333333345556899998764

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.32  E-value=0.019  Score=30.23  Aligned_cols=58  Identities=28%  Similarity=0.539  Sum_probs=35.7

Q ss_pred             eCCeEEEEEeecCC-CCC-ceEEEecCCCCCCCce----e-ee------ccceEEEeecCCCCeEEEEEeecCC
Q psy7616          24 KGGTITLECKASGN-PVP-SIIWSKKDSSLPSGEK----S-LE------GFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        24 ~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~~~----~-~~------~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .++.+.|.|.+.+. |.. .|.|.+++..+.....    . ..      .+.+.+.   ..+...|.|.+.+..
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETT
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECC
Confidence            47889999998875 433 5999999876543221    1 01      1123332   444557999988754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=96.12  E-value=0.0055  Score=34.51  Aligned_cols=24  Identities=13%  Similarity=0.447  Sum_probs=20.4

Q ss_pred             CCceEEeecCCCCCeEEEEEeecC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        76 ~~~L~I~~~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          76 TSTLTIQNLEKEDSATYYCAYWES   99 (116)
T ss_pred             EEEEEEEECCHHHCEEEEEEEecC
Confidence            346888999999999999999753

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=96.07  E-value=0.014  Score=31.17  Aligned_cols=37  Identities=14%  Similarity=0.410  Sum_probs=26.9

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+.+|.+.+++..|+|..+|.+.-... .....+.+.|
T Consensus        49 ~~ktL~~~qv~~qdSG~WtC~V~~~~k-~~~~~~~V~V   85 (88)
T cd07694          49 DKKTLNLVQLGPNDSGTWDCIVSVNSS-EKTLKLDIKV   85 (88)
T ss_pred             CccEEEeceeCcccCCEEEEEEEECce-EEEEEeeEEE
Confidence            567889999999999999999974422 2244555555

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=96.03  E-value=0.018  Score=32.47  Aligned_cols=67  Identities=21%  Similarity=0.409  Sum_probs=44.4

Q ss_pred             ceEEeeCCeEEEEEeecCCC----CCceEEEecCC--C-------------CC-CCcee-----------eeccceEEEe
Q psy7616          19 QLTVRKGGTITLECKASGNP----VPSIIWSKKDS--S-------------LP-SGEKS-----------LEGFSITLEK   67 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~~~--~-------------~~-~~~~~-----------~~~~~l~~~~   67 (147)
                      .+.+..|+.++|.|......    ...+.|++...  .             .. .....           .....|.|.+
T Consensus         7 ~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   86 (116)
T cd05715           7 EVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVIHN   86 (116)
T ss_pred             eEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEEee
Confidence            55788999999999875432    24599986321  0             00 00000           0124689999


Q ss_pred             ecCCCCeEEEEEeecCCC
Q psy7616          68 VDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~~~   85 (147)
                      ++.+|+|.|.|.+.+...
T Consensus        87 v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          87 LQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             CCcccCEEEEEEEEeCCC
Confidence            999999999999987544

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=96.00  E-value=0.017  Score=32.61  Aligned_cols=67  Identities=21%  Similarity=0.459  Sum_probs=44.6

Q ss_pred             ceEEeeCCeEEEEEeecCCC----CCceEEEec---CCC---C----------CCCc---ee-------eeccceEEEee
Q psy7616          19 QLTVRKGGTITLECKASGNP----VPSIIWSKK---DSS---L----------PSGE---KS-------LEGFSITLEKV   68 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~---~~~---~----------~~~~---~~-------~~~~~l~~~~~   68 (147)
                      .+.+..|+++.|.|.....+    ...+.|++.   +..   +          ....   +.       .....|.|.++
T Consensus         7 ~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~~v   86 (115)
T cd05880           7 EVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIWQL   86 (115)
T ss_pred             eEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEeeC
Confidence            56889999999999865432    235999752   111   0          0000   00       12346999999


Q ss_pred             cCCCCeEEEEEeecCCC
Q psy7616          69 DRHQAGVYQCTATNGVG   85 (147)
Q Consensus        69 ~~~~~g~y~C~~~~~~~   85 (147)
                      +.+|+|.|.|.+.+...
T Consensus        87 ~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          87 QPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             ChhhCEEEEEEEEeCCC
Confidence            99999999999987544

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.99  E-value=0.01  Score=32.90  Aligned_cols=65  Identities=25%  Similarity=0.504  Sum_probs=46.2

Q ss_pred             ceEEeeCCeEEEEEeec-CCCCCceEEEecCCCC-----C----C------------Cceee-----eccceEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSL-----P----S------------GEKSL-----EGFSITLEKVDRH   71 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~-----~----~------------~~~~~-----~~~~l~~~~~~~~   71 (147)
                      .+.+..|+++.|.|... ......+.|++.....     .    .            .....     ....|.|.+++..
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~l~~~   89 (114)
T PF07686_consen   10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKNLQPS   89 (114)
T ss_dssp             EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESSESGG
T ss_pred             eEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECCCCcC
Confidence            56888999999999987 4455679999944310     0    0            00011     1235999999999


Q ss_pred             CCeEEEEEeecC
Q psy7616          72 QAGVYQCTATNG   83 (147)
Q Consensus        72 ~~g~y~C~~~~~   83 (147)
                      |+|.|.|.+...
T Consensus        90 DsG~Y~C~v~~~  101 (114)
T PF07686_consen   90 DSGTYFCQVSTS  101 (114)
T ss_dssp             GEEEEEEEEEES
T ss_pred             cCEEEEEEEEEC
Confidence            999999998876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=95.96  E-value=0.13  Score=29.07  Aligned_cols=29  Identities=17%  Similarity=0.158  Sum_probs=21.4

Q ss_pred             eEEeeCCeEEEEEeecCCCC---CceEEEecC
Q psy7616          20 LTVRKGGTITLECKASGNPV---PSIIWSKKD   48 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~---~~v~w~~~~   48 (147)
                      ..+..|..+.|.|...+...   ..+.|.+..
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~   39 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGA   39 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEeC
Confidence            36778889999999866432   358888864

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=95.95  E-value=0.01  Score=33.70  Aligned_cols=23  Identities=17%  Similarity=0.315  Sum_probs=20.1

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        80 ~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          80 CSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             EEEEEccCChhhCeEEEEEEEcC
Confidence            46888999999999999998664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=95.91  E-value=0.0053  Score=34.61  Aligned_cols=23  Identities=17%  Similarity=0.385  Sum_probs=20.2

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .+|.|.+++.+|+|.|.|.+...
T Consensus        72 ~sL~I~~~~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          72 ISLTISALQLEDSAKYFCALSTL   94 (116)
T ss_pred             EEEEECCCCHHHCEEEEEEEECC
Confidence            46888999999999999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00096 Ig Immunoglobulin domain

Probab=95.56  E-value=0.017  Score=28.33  Aligned_cols=25  Identities=28%  Similarity=0.613  Sum_probs=21.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      ...+.+.+++..|.|.|.|.+.+..
T Consensus        42 ~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096          42 SSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             EEEEEECccCcccCcEEEEEEecCc
Confidence            4457778889999999999998876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=95.43  E-value=0.043  Score=27.54  Aligned_cols=39  Identities=26%  Similarity=0.203  Sum_probs=24.6

Q ss_pred             EEEEeee---ecCCCCcc-----ccCCceEEeecCCCCCeEEEEEeec
Q psy7616          93 TLEVLCK---ILPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus        93 ~l~v~~~---~~~~~~~~-----~~~~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .+.+.+|   ..+.|.++     ..+..+.+.+-. +++|.|.|.+.+
T Consensus         9 tVtlTCP~~~~~i~W~~n~~~~~g~~~~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           9 TVTVTCPLSGDDIKWKKNDQVSQGSDEKYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EEEEECCCCCCCceEEeCCccCCCCCceEEeeccC-CCCceEEEEeCC
Confidence            3445555   44666665     223345555666 899999999953

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA03042 CD47-like protein; Provisional

Probab=95.38  E-value=0.13  Score=33.46  Aligned_cols=63  Identities=17%  Similarity=0.267  Sum_probs=40.2

Q ss_pred             EeeCCeEEEEEeecCC-----CCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          22 VRKGGTITLECKASGN-----PVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~-----~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      -.-++.+.++|.....     ....+.|..++...-..... +..++.+...+ .-.|+|+|.+.+...+
T Consensus        28 T~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-n~aSL~~~f~~-~l~GNYTCEv~~l~n~   95 (286)
T PHA03042         28 TTCNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-NTSSLKFNFSK-NLSGNYTCEAINKFNK   95 (286)
T ss_pred             EecCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-cceEEEEeccc-cCCCceeEEEeecccC
Confidence            3468889999987542     23459999988665322222 33456554443 3479999999875444

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.38  E-value=0.01  Score=34.12  Aligned_cols=71  Identities=18%  Similarity=0.286  Sum_probs=37.6

Q ss_pred             eeCCeEEEEEeecCCC-----CCceEEEecCCCCCC----Cce--------------eeeccceEEEeecCCCCeEEEEE
Q psy7616          23 RKGGTITLECKASGNP-----VPSIIWSKKDSSLPS----GEK--------------SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~~-----~~~v~w~~~~~~~~~----~~~--------------~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .-++.+.++|.+....     ...+.|...+..+-.    ...              ..+..+|.+...+.- .|.|+|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            3578899999986522     234899998764310    000              112234777765544 7999999


Q ss_pred             eecCCCCceEEeEEEE
Q psy7616          80 ATNGVGDPVTVDMTLE   95 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~   95 (147)
                      +.....+. +..+.|.
T Consensus       104 Vt~~~~eg-e~~i~Lk  118 (130)
T PF08204_consen  104 VTELSREG-ETTIELK  118 (130)
T ss_dssp             EEETTEEE-EEEEEEE
T ss_pred             EEecCCCc-eEEEEEE
Confidence            98765443 4444443

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.35  E-value=0.043  Score=35.34  Aligned_cols=47  Identities=15%  Similarity=0.338  Sum_probs=35.2

Q ss_pred             CCCceEEEecCCCC-CCCc--eeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          38 PVPSIIWSKKDSSL-PSGE--KSLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        38 ~~~~v~w~~~~~~~-~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      ..|.+.|..+++.. ..+.  ...+.+.|++.+.....+|.|+|.+....
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNITETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEEccCceEEeeccccccCCceEEEEEEEe
Confidence            56889999876554 3332  24466779999999999999999987643

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03376 BARF1; Provisional

Probab=94.82  E-value=0.033  Score=34.20  Aligned_cols=24  Identities=21%  Similarity=0.444  Sum_probs=20.1

Q ss_pred             CceEEeecCCCCCeEEEEEeecCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      .++.|.+++.+|.|.|+|..+...
T Consensus        87 vsLvI~~l~lSDdGtY~C~fQkge  110 (221)
T PHA03376         87 FFLVVTAANISHDGNYLCRMKLGE  110 (221)
T ss_pred             EEEEEEeeeecCCceEEEEEEcCC
Confidence            356678999999999999997654

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=94.66  E-value=0.023  Score=32.15  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=19.0

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.+.+++.+|+|.|.|.+..
T Consensus        77 ~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          77 YLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             EEEECCCCHHHCEEEEEEEEc
Confidence            588899999999999999865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA02982 hypothetical protein; Provisional

Probab=94.31  E-value=0.48  Score=29.75  Aligned_cols=28  Identities=11%  Similarity=0.376  Sum_probs=19.4

Q ss_pred             EEeeCCeEEEEEeecCC-CCCceEEEecC
Q psy7616          21 TVRKGGTITLECKASGN-PVPSIIWSKKD   48 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~-~~~~v~w~~~~   48 (147)
                      ....++++.|.|..... ...+..|+.+.
T Consensus        35 ~a~vd~~V~L~C~~~~~~~i~~~~W~~~~   63 (251)
T PHA02982         35 NATVDQEVKLQCLFKDADEISRAMWKGDA   63 (251)
T ss_pred             hccCCCcEEEEecCCCcchhhhheeeCCC
Confidence            44568999999985432 34568898754

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=94.28  E-value=0.12  Score=27.35  Aligned_cols=31  Identities=23%  Similarity=0.293  Sum_probs=22.1

Q ss_pred             ecCCCCCe-EEEEEeecCCCCCcCeeeEEEEC
Q psy7616         117 KVDRHQAG-VYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       117 ~~~~~d~G-~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .++.+|.| .|+|.|.|+.-........|+|+
T Consensus        49 ~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~   80 (82)
T cd05883          49 KVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQ   80 (82)
T ss_pred             ECchhhCCCEEEEEEcCcccCCceeeEEEEEE
Confidence            55556665 79999999874445667777774

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=93.88  E-value=0.057  Score=34.80  Aligned_cols=27  Identities=19%  Similarity=0.335  Sum_probs=22.1

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      .+.+.|.+.+.+..++|.|+|..+-..
T Consensus        34 T~TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   34 TETGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             ccCceEEeeccccccCCceEEEEEEEe
Confidence            444569999999999999999986554

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>KOG1480|consensus

Probab=93.68  E-value=0.061  Score=39.84  Aligned_cols=74  Identities=22%  Similarity=0.440  Sum_probs=51.6

Q ss_pred             EEeeCCeEEEEEe-ecCCCCCceEEEecCCCCCCCc--eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          21 TVRKGGTITLECK-ASGNPVPSIIWSKKDSSLPSGE--KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        21 ~~~~g~~~~l~C~-~~~~~~~~v~w~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      .+..++.+.+.|. ..+.+...+.|++++.......  .......+++..+...|.|.|+|.+.+........++.+
T Consensus       140 ~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v  216 (909)
T KOG1480|consen  140 EVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDHNLIISQARLSDSGNYTCEATNIVAKRKSDPATV  216 (909)
T ss_pred             eecccccccccccCcccchhhhhhccccCCCCCccccchhhhcCCccccchhhhhcccceeeeehhhccccccceEE
Confidence            5666777788886 4667788899999886654422  222344577888889999999999998766543333333

>KOG1480|consensus

Probab=93.56  E-value=0.046  Score=40.45  Aligned_cols=37  Identities=24%  Similarity=0.389  Sum_probs=30.6

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .++++.+++..|.|+|+|+|.|..+..++..+++.||
T Consensus       183 ~~li~~~arlsd~~nytc~a~ni~~~r~~~~~~v~vy  219 (909)
T KOG1480|consen  183 HNLIISQARLSDSGNYTCEATNIVAKRKSDPATVQVY  219 (909)
T ss_pred             CCccccchhhhhcccceeeeehhhccccccceEEEEE
Confidence            4566689999999999999999998887777776664

>PHA03270 envelope glycoprotein C; Provisional

Probab=93.47  E-value=1.7  Score=30.49  Aligned_cols=42  Identities=21%  Similarity=0.394  Sum_probs=31.1

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC--ceEEEecCCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP--SIIWSKKDSSLP   52 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~--~v~w~~~~~~~~   52 (147)
                      -+|.+.+.+.    .+..|++..-.|.+... |..  .+.|+.++....
T Consensus       220 r~Psvsv~~~----PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~V~  264 (466)
T PHA03270        220 RRPSLSIRPH----AVLEGEPFGATCVAANYYPGDRAAFRWFEGGDEVF  264 (466)
T ss_pred             cCCcccccCC----ccccCCCceEEEEeeeecCCCceEEEEEeCCcccc
Confidence            3667666665    56799999999997654 332  499999998764

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=92.61  E-value=0.45  Score=26.46  Aligned_cols=38  Identities=21%  Similarity=0.419  Sum_probs=28.5

Q ss_pred             eccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        59 ~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ++..|.|+.++..|+|.|.-.+.+..|......+.+.|
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            45579999999999999999999988876555565554

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=91.56  E-value=0.44  Score=24.99  Aligned_cols=17  Identities=6%  Similarity=0.110  Sum_probs=12.8

Q ss_pred             CCCCeEEEEEeecCCCC
Q psy7616         120 RHQAGVYQCTATNGVGD  136 (147)
Q Consensus       120 ~~d~G~Y~C~a~n~~g~  136 (147)
                      ..|.+.|+|.|.+....
T Consensus        54 ~d~g~~~~C~v~h~~l~   70 (82)
T cd05761          54 EDDGAPIICRVDHPALK   70 (82)
T ss_pred             hhCCCEEEEEEeChhcC
Confidence            34456999999998644

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=91.26  E-value=0.24  Score=28.61  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=20.2

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE  145 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~  145 (147)
                      .+|.+...+.- .|+|+|.+....... +..+.|.
T Consensus        86 aSL~~~~~~a~-~GnYTCeVt~~~~eg-e~~i~Lk  118 (130)
T PF08204_consen   86 ASLKMDKSDAV-EGNYTCEVTELSREG-ETTIELK  118 (130)
T ss_dssp             --EEEEHHHHH--EEEEEEEEETTEEE-EEEEEEE
T ss_pred             EEEEEcchhcc-ccceEEEEEecCCCc-eEEEEEE
Confidence            35666654444 799999998776555 4455554

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=90.82  E-value=1.6  Score=23.53  Aligned_cols=59  Identities=22%  Similarity=0.467  Sum_probs=34.8

Q ss_pred             EEeeCCeEEEEEeecCC-----CCCceEEEecCCCCCCCceee---eccceEEEeecCCCCeEEEEE
Q psy7616          21 TVRKGGTITLECKASGN-----PVPSIIWSKKDSSLPSGEKSL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~-----~~~~v~w~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+..|++++..|.....     ....+.|..++..++...+..   ..+...+.+.......-|.|.
T Consensus        14 vv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~in~~~SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen   14 VVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVINDTVSSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             EEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEESTTEEEEEESS--SSEEEEEEEE
T ss_pred             EEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHcceeCCeEEEEEEccCCCCCceEEEEE
Confidence            78999999999986432     345699999888777654432   223445555444333344554

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.32  E-value=0.67  Score=24.40  Aligned_cols=36  Identities=17%  Similarity=0.243  Sum_probs=22.6

Q ss_pred             CCceEEeecCCCCCeEEEEEe-ecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTA-TNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a-~n~~g~~~~~~~~l~V  146 (147)
                      ...+...+...+|+|...|.| .+..-.. .....|.|
T Consensus        42 ~~~~~~~~~~~~d~G~w~C~a~~~~~k~~-~s~~~i~v   78 (80)
T PF05790_consen   42 KKLVSTFTPTTEDSGTWVCTASDNEPKER-ESKIEILV   78 (80)
T ss_dssp             SSEEEEESBTCGGSEEEEEEEEECTTEEE-EEEEEEEE
T ss_pred             ceEEEEecCCCCCCEEEEEEEcCCceEEE-EEEEEEEc
Confidence            334555777889999999999 4443222 33444444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.72  E-value=1.9  Score=22.72  Aligned_cols=38  Identities=16%  Similarity=0.243  Sum_probs=23.6

Q ss_pred             CCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEee
Q psy7616          39 VPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus        39 ~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .+.+.|+..+..     ................|+|.+.|.+.
T Consensus        26 ~~~~~l~~~~~k-----~~~~~~~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   26 KPSLFLENPGKK-----SLETKKLVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             CEEEEEECSSCE-----EEEESSEEEEESBTCGGSEEEEEEEE
T ss_pred             ChhheeeccCcc-----ccccceEEEEecCCCCCCEEEEEEEc
Confidence            345666554422     12233445566777899999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=88.50  E-value=4.6  Score=27.59  Aligned_cols=35  Identities=20%  Similarity=0.442  Sum_probs=22.4

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKK   47 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~   47 (147)
                      +||.+.+...+     ..+ .++|.|.+.|. |. ..+.|.++
T Consensus       202 vpP~V~Vt~k~-----~~~-~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        202 VTPTVKVTGEE-----LGD-NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CCCceEEeccc-----CCC-CceEEEEEEeEeCCccEEEEEec
Confidence            46666554321     122 57999999885 33 34889999

>PHA03042 CD47-like protein; Provisional

Probab=87.95  E-value=0.64  Score=30.37  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=15.0

Q ss_pred             CCeEEEEEeecCCCCCcCeeeEE
Q psy7616         122 QAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       122 d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      -.|+|||+|.+..... ...+.|
T Consensus        81 l~GNYTCEv~~l~n~g-k~~IeL  102 (286)
T PHA03042         81 LSGNYTCEAINKFNKI-KNTIEL  102 (286)
T ss_pred             CCCceeEEEeecccCc-cEEEEE
Confidence            3699999998876544 334443

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=87.87  E-value=0.32  Score=26.84  Aligned_cols=23  Identities=26%  Similarity=0.693  Sum_probs=19.4

Q ss_pred             ccceEEEeecCCCCeEEEEEeec
Q psy7616          60 GFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        60 ~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      ...|.|.+++.+|+|.|.|.+..
T Consensus        68 ~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          68 SFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             EEEEEECCCCHHHCEEEEEEEcc
Confidence            34689999999999999998753

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=85.67  E-value=5  Score=28.10  Aligned_cols=65  Identities=22%  Similarity=0.447  Sum_probs=45.5

Q ss_pred             ceEEeeCCeEEEEEeec--C-CCCCceEEEecCCCCCC------------------Cce----------eeeccceEEEe
Q psy7616          19 QLTVRKGGTITLECKAS--G-NPVPSIIWSKKDSSLPS------------------GEK----------SLEGFSITLEK   67 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~--~-~~~~~v~w~~~~~~~~~------------------~~~----------~~~~~~l~~~~   67 (147)
                      ++.+..|..+.+.|...  | ....++.|+..+-+..+                  ...          -..+++|.|++
T Consensus       273 ~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkk  352 (500)
T PHA02914        273 EVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKK  352 (500)
T ss_pred             eeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeee
Confidence            56777799999999853  2 23456889987644321                  000          11456899999


Q ss_pred             ecCCCCeEEEEEeecC
Q psy7616          68 VDRHQAGVYQCTATNG   83 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~   83 (147)
                      +.....|-|.|.+...
T Consensus       353 a~I~N~GCY~~~a~~g  368 (500)
T PHA02914        353 AHINNAGCYEAQAFMG  368 (500)
T ss_pred             EEEEcCCceEEEEecC
Confidence            9999999999998754

>PHA03052 Hypothetical protein; Provisional

Probab=85.41  E-value=3.4  Score=20.94  Aligned_cols=33  Identities=18%  Similarity=0.436  Sum_probs=23.9

Q ss_pred             ceEEeeCCeEEEEEeec---CCCCCceEEEecCCCC
Q psy7616          19 QLTVRKGGTITLECKAS---GNPVPSIIWSKKDSSL   51 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~---~~~~~~v~w~~~~~~~   51 (147)
                      .+.+..|+++++.|.+.   +...+.+.|..++...
T Consensus         6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          6 GIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             cEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            55788999999999962   3344567888776554

>KOG4597|consensus

Probab=85.38  E-value=2.6  Score=30.07  Aligned_cols=75  Identities=16%  Similarity=0.178  Sum_probs=51.2

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEec--CCCC---CCC-----ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEE
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKK--DSSL---PSG-----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTV   90 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~---~~~-----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   90 (147)
                      .+..++...+.|...|.+.+.|.|.+-  ++..   ..+     ......-.|.|-+....++|-|.|.+.+..+.. .+
T Consensus       207 ~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~-~r  285 (560)
T KOG4597|consen  207 FVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAGFL-RR  285 (560)
T ss_pred             hcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeecccccccee-ec
Confidence            556788889999999999999999862  1111   111     112233357788888999999999999877763 55


Q ss_pred             eEEEEE
Q psy7616          91 DMTLEV   96 (147)
Q Consensus        91 ~~~l~v   96 (147)
                      .+.+.+
T Consensus       286 dv~c~s  291 (560)
T KOG4597|consen  286 DVPCSS  291 (560)
T ss_pred             cceeee
Confidence            444443

>PHA03282 envelope glycoprotein E; Provisional

Probab=82.64  E-value=3.5  Score=29.38  Aligned_cols=39  Identities=13%  Similarity=0.215  Sum_probs=26.3

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      ....+|.|.+++.+|+|.|+-.+...-... +...+.|.|
T Consensus       121 ~~n~tl~l~~a~~~DsG~Y~L~~~~~~~~~~~~~~v~l~V  160 (540)
T PHA03282        121 VVNGTLVLREARETDSGMYVLSVSRAPNSTAARAVVFLVV  160 (540)
T ss_pred             EecceEEEeeccccCCceEEEEecCCCCchhheEEEEEEe
Confidence            446679999999999999999864332222 233355544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	147
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		1e-09
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-09
2v9t_A	117	Complex Between The Second Lrr Domain Of Slit2 And		4e-09
2v9q_A	212	First And Second Ig Domains From Human Robo1 Length		5e-09
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		4e-08
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		4e-07
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		1e-06
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		1e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-06
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		2e-06
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		2e-06
1bih_A	395	Crystal Structure Of The Insect Immune Protein Hemo		2e-06
3kld_A	384	Ptprg Cntn4 Complex Length = 384		2e-06
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		2e-06
3s97_C	201	Ptprz Cntn1 Complex Length = 201		2e-06
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		2e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		3e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		3e-06
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		3e-06
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		3e-06
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		4e-06
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-06
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-05
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		7e-06
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		9e-06
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		3e-05
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		2e-05
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		2e-05
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		2e-05
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-05
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		3e-05
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		4e-05
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		4e-05
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		5e-05
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		4e-05
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		4e-05
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		4e-05
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		6e-05
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		7e-05
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		1e-04
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		2e-04
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		2e-04
3k0w_A	218	Crystal Structure Of The Tandem Ig-Like C2-Type 2 D		3e-04
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		3e-04
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		5e-04
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		5e-04
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		8e-04
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		9e-04

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL-----EGFS 62
           PP I   P N    VR GG  +  C A G+P PSI+W K    + SG +S      +   
Sbjct: 8   PPEIIRKPQN--QGVRVGGVASFYCAARGDPPPSIVWRKNGKKV-SGTQSRYTVLEQPGG 64
Query: 63  ITLEKVDRHQAGV----YQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSI 113
           I++ +++  +AG     Y+C A NGVGD V+ D TL +       G+K+  GF +
Sbjct: 65  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY-----EGDKTPAGFPV 114

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 40/115 (34%), Positives = 58/115 (50%), Gaps = 17/115 (14%)
Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL-----EGFS 62
           PP I   P N    VR GG  +  C A G+P PSI+W K    + SG +S      +   
Sbjct: 6   PPEIIRKPQN--QGVRVGGVASFYCAARGDPPPSIVWRKNGKKV-SGTQSRYTVLEQPGG 62
Query: 63  ITLEKVDRHQAGV----YQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSI 113
           I++ +++  +AG     Y+C A NGVGD V+ D TL +       G+K+  GF +
Sbjct: 63  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIY-----EGDKTPAGFPV 112

>pdb|2V9T|A Chain A, Complex Between The Second Lrr Domain Of Slit2 And The First Ig Domain From Robo1 Length = 117

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--------KDSS------LP 52
            PP I   PS+  L V KG   TL CKA G P P+I W K        KD        LP
Sbjct: 8   FPPRIVEHPSD--LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 53  SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           SG  SL    I   +  R   GVY C A N +G+ V+ D +LEV
Sbjct: 66  SG--SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|2V9Q|A Chain A, First And Second Ig Domains From Human Robo1 Length = 212

Iteration: 1
 Score = 56.6 bits (135), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 42/104 (40%), Positives = 49/104 (47%), Gaps = 18/104 (17%)
Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--------KDSS------LP 52
            PP I   PS+  L V KG   TL CKA G P P+I W K        KD        LP
Sbjct: 8   FPPRIVEHPSD--LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65
Query: 53  SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           SG  SL    I   +  R   GVY C A N +G+ V+ D +LEV
Sbjct: 66  SG--SLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEV 107

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 22  VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE--KVDRHQAGVYQCT 79
           V +G  + LEC ASG P P I W KK   LPS +   E F+  L    V    +G Y C 
Sbjct: 234 VLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCL 293
Query: 80  ATNGVGDPVTVDMTLEVLCKILP 102
           A+N +G   ++  T+ V  K  P
Sbjct: 294 ASNKMG---SIRHTISVRVKAAP 313

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEG 60
           Q++M  P I   P N  + + +G    L C   GNP PS+ W K DS+L    +   LE 
Sbjct: 96  QVKM-KPKITRPPIN--VKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLES 152
Query: 61  FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
            S+ +  V +  AG Y+C A N +G   +  + LEV
Sbjct: 153 GSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEV 188

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 6/86 (6%)
Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEG 60
          VPPS+R   S    T     ++TL C A G P P++ W+K    +   +       + +G
Sbjct: 10 VPPSVRARQSTMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDG 69
Query: 61 FSITLEKVDRHQAGVYQCTATNGVGD 86
            + ++KVD+     Y C A N  G+
Sbjct: 70 SELIIKKVDKSDEAEYICIAENKAGE 95

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGFSI 63
           VPP+I     +   T  +G  +T  C+ASG+P P+I W +    +   EK +       +
Sbjct: 191 VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 250
Query: 64  TLEKVDRHQAGVYQCTATNGVGD 86
           T+  +     G Y C ATN  G+
Sbjct: 251 TVRNIINSDGGPYVCRATNKAGE 273

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 25/83 (30%), Positives = 39/83 (46%), Gaps = 3/83 (3%)
Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGFSI 63
           VPP+I     +   T  +G  +T  C+ASG+P P+I W +    +   EK +       +
Sbjct: 95  VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 154
Query: 64  TLEKVDRHQAGVYQCTATNGVGD 86
           T+  +     G Y C ATN  G+
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGE 177

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 61/154 (39%), Gaps = 43/154 (27%)
Query: 24  KGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS---ITLEKVDRHQAGVYQCTA 80
           KG T+ LEC A GNPVP+I+W + D   P   K+    S   + +    +  AG Y+C A
Sbjct: 218 KGTTVKLECFALGNPVPTILWRRADGK-PIARKARRHKSNGILEIPNFQQEDAGSYECVA 276
Query: 81  TNGVG--------------------DPVTVDMTLEVL--CKI----------LPSGEKSL 108
            N  G                    + + V M   V   CK           L +G+  L
Sbjct: 277 ENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL 336
Query: 109 EGFSITLEK-------VDRHQAGVYQCTATNGVG 135
               I +E+       V+   AG+YQC A N  G
Sbjct: 337 TRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 370

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
           PP     P + Q+ V  GG  +  C+A+G+P P + W+KK   + S       F  +   
Sbjct: 6   PPRFIKEPKD-QIGV-SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 68  VDRHQ-------AGVYQCTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVD 119
           V R Q         VY+C A N VG+ +TV   L VL +  LPSG  +++     L+ V+
Sbjct: 64  VLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNID-MGPQLKVVE 121
Query: 120 RHQAGVYQCTATNGVGDP 137
           R +     C A+ G  DP
Sbjct: 122 RTRTATMLCAAS-GNPDP 138

>pdb|1BIH|A Chain A, Crystal Structure Of The Insect Immune Protein Hemolin: A New Domain Arrangement With Implications For Homophilic Adhesion Length = 395

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 35/67 (52%)
Query: 20  LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCT 79
           + V++G  +T+ CK +G P P+++WS     L  G  ++    + ++ V     G Y C 
Sbjct: 319 IVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCR 378
Query: 80  ATNGVGD 86
           ATN  GD
Sbjct: 379 ATNEHGD 385

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 61/154 (39%), Gaps = 43/154 (27%)
Query: 24  KGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS---ITLEKVDRHQAGVYQCTA 80
           KG T+ LEC A GNPVP+I+W + D   P   K+    S   + +    +  AG Y+C A
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGK-PIARKARRHKSNGILEIPNFQQEDAGSYECVA 277
Query: 81  TNGVG--------------------DPVTVDMTLEVL--CKI----------LPSGEKSL 108
            N  G                    + + V M   V   CK           L +G+  L
Sbjct: 278 ENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLL 337
Query: 109 EGFSITLEK-------VDRHQAGVYQCTATNGVG 135
               I +E+       V+   AG+YQC A N  G
Sbjct: 338 TRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG 371

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
           PP     P + Q+ V  GG  +  C+A+G+P P + W+KK   + S       F  +   
Sbjct: 6   PPRFIKEPKD-QIGV-SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 68  VDRHQ-------AGVYQCTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVD 119
           V R Q         VY+C A N VG+ +TV   L VL +  LPSG  +++     L+ V+
Sbjct: 64  VLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNID-MGPQLKVVE 121
Query: 120 RHQAGVYQCTATNGVGDP 137
           R +     C A+ G  DP
Sbjct: 122 RTRTATMLCAAS-GNPDP 138

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/138 (31%), Positives = 65/138 (47%), Gaps = 13/138 (9%)
Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
           PP     P + Q+ V  GG  +  C+A+G+P P + W+KK   + S       F  +   
Sbjct: 6   PPRFIKEPKD-QIGV-SGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGA 63
Query: 68  VDRHQ-------AGVYQCTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVD 119
           V R Q         VY+C A N VG+ +TV   L VL +  LPSG  +++     L+ V+
Sbjct: 64  VLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLREDQLPSGFPNID-MGPQLKVVE 121
Query: 120 RHQAGVYQCTATNGVGDP 137
           R +     C A+ G  DP
Sbjct: 122 RTRTATMLCAAS-GNPDP 138

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 57/127 (44%), Gaps = 19/127 (14%)
Query: 30  LECKASGNPVPSIIWSKKDSSL-----------PSGEKSLEGFSITLEKVDRHQAGVYQC 78
           +ECKASGNP+P IIW + D +              G+     F     + + H A VY C
Sbjct: 24  IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH-AQVYAC 82
Query: 79  TATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
            A N  G  ++ D+ +  +  ++ S E   +      E V R  + V +C   + V D V
Sbjct: 83  LARNQFGSIISRDVHVRAV--VIQSYESEADN-----EYVIRGNSVVMKCEIPSYVADFV 135
Query: 139 TVDMTLE 145
            VD+ L+
Sbjct: 136 FVDLWLD 142

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Query: 25  GGTITLECKASGNPVPSIIWSKKDSSLPS-GEKSLEGFSITLEKVDRHQAGVYQCTATNG 83
           G  +TLEC A GNPVP I W K    +PS  E S  G  + +  +     G+Y+C A N 
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENI 187
Query: 84  VG 85
            G
Sbjct: 188 RG 189

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGF--S 62
           PP  R  P    +   KG  + LEC+  G P   + W K    L SG+K     E F  S
Sbjct: 384 PPVFRKKPH--PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 441
Query: 63  ITLEKVDRHQAGVYQCTATNGVG 85
           I +  VD    G YQC A+N VG
Sbjct: 442 IHILNVDSADIGEYQCKASNDVG 464

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGF--S 62
           PP  R  P    +   KG  + LEC+  G P   + W K    L SG+K     E F  S
Sbjct: 192 PPVFRKKPH--PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 249
Query: 63  ITLEKVDRHQAGVYQCTATNGVG 85
           I +  VD    G YQC A+N VG
Sbjct: 250 IHILNVDSADIGEYQCKASNDVG 272

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 25  GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 82
           G  +TLEC A GNPVP I W K D S  S   S E   + ++ VD    G Y+C A N
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPL-LHIQNVDFEDEGTYECEAEN 278

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 38/83 (45%), Gaps = 7/83 (8%)
Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGF--S 62
           PP  R  P    +   KG  + LEC+  G P   + W K    L SG+K     E F  S
Sbjct: 192 PPVFRKKPH--PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTS 249
Query: 63  ITLEKVDRHQAGVYQCTATNGVG 85
           I +  VD    G YQC A+N VG
Sbjct: 250 IHILNVDSADIGEYQCKASNDVG 272

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 30/83 (36%), Positives = 40/83 (48%), Gaps = 4/83 (4%)
Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK-DSSLPSGEKSLEGFS-I 63
           +VPP     PSN  L   +   I  EC  SG PVP++ W K  D  +PS    + G S +
Sbjct: 310 LVPPWFLNHPSN--LYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNL 367
Query: 64  TLEKVDRHQAGVYQCTATNGVGD 86
            +  V +   G YQC A N  G+
Sbjct: 368 RILGVVKSDEGFYQCVAENEAGN 390

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 31/85 (36%), Positives = 41/85 (48%), Gaps = 4/85 (4%)
Query: 2   EQLQMVPPSIRTS-PSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG 60
           E  ++  PSI+   P+     V  G  +TLEC A GNPVP I W K D SL     + E 
Sbjct: 199 EDTRLFAPSIKARFPAETYALV--GQQVTLECFAFGNPVPRIKWRKVDGSLSPQWTTAEP 256
Query: 61  FSITLEKVDRHQAGVYQCTATNGVG 85
            ++ +  V     G Y+C A N  G
Sbjct: 257 -TLQIPSVSFEDEGTYECEAENSKG 280

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/107 (33%), Positives = 49/107 (45%), Gaps = 11/107 (10%)
Query: 1   MEQLQMVP--PSIRTSPSNGQL-TVRKGGTITLECKASGNPVPSIIWSKK----DSSLPS 53
           +E+ Q+ P  PSI   P   QL  V K  T T+ C A GNP P I W K     D +  +
Sbjct: 99  LEEEQLPPGFPSIDMGP---QLKVVEKARTATMLCAAGGNPDPEISWFKDFLPVDPATSN 155
Query: 54  GE-KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
           G  K L   ++ +E  +    G Y+C ATN  G   +    L V  +
Sbjct: 156 GRIKQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYVRVR 202

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 25  GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS--------ITLEKVDRHQAGVY 76
           GG  +  C+A+G P P I W KK   + S    +  F         I   +V R +A +Y
Sbjct: 21  GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IY 79
Query: 77  QCTATNGVGDPVTVDMTLEVL-CKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
           +CTATN +G+ +     L VL  + LP G  S++     L+ V++ +     C A  G  
Sbjct: 80  ECTATNSLGE-INTSAKLSVLEEEQLPPGFPSID-MGPQLKVVEKARTATMLC-AAGGNP 136
Query: 136 DP 137
           DP
Sbjct: 137 DP 138

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 8/100 (8%)
Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG--FS-- 62
           VPP+++   S    T   G ++TL C A G P P++ W+K    + + E+  E   FS  
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252
Query: 63  ---ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
              +T+  VD++    Y C A N  G+     + L+V  K
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLKVFAK 291

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 46/101 (45%), Gaps = 9/101 (8%)
Query: 2   EQLQMVPPSIRTSPSNGQL-TVRKGGTITLECKASGNPVPSIIWSKK----DSSLPSGE- 55
           +QL    P+I   P   QL  V KG T T+ C A GNP P I W K     D +  +G  
Sbjct: 103 DQLPSGFPTIDMGP---QLKVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRI 159
Query: 56  KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           K L   ++ +E  +    G Y+C ATN  G   +    L V
Sbjct: 160 KQLRSGALQIESSEESDQGKYECVATNSAGTRYSAPANLYV 200

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 58/122 (47%), Gaps = 13/122 (10%)
Query: 25  GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS--------ITLEKVDRHQAGVY 76
           GG  +  C+A+G P P I W KK   + S    +  F         I   +V R +A +Y
Sbjct: 22  GGVASFVCQATGEPKPRITWMKKGKKVSSQRFEVIEFDDGAGSVLRIQPLRVQRDEA-IY 80
Query: 77  QCTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
           +CTATN +G+ +     L VL +  LPSG  +++     L+ V++ +     C A  G  
Sbjct: 81  ECTATNSLGE-INTSAKLSVLEEDQLPSGFPTID-MGPQLKVVEKGRTATMLC-AAGGNP 137
Query: 136 DP 137
           DP
Sbjct: 138 DP 139

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---- 60
           Q   P I   P++  L V+K    TL CK  G P P+I W K    + + EK        
Sbjct: 6   QYQSPRIIEHPTD--LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK 63
Query: 61  -----FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                F  T++       G Y C A N VG  V+   +L++
Sbjct: 64  DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 42/101 (41%), Gaps = 11/101 (10%)
Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---- 60
           Q   P I   P++  L V+K    TL CK  G P P+I W K    + + EK        
Sbjct: 6   QYQSPRIIEHPTD--LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK 63
Query: 61  -----FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                F  T++       G Y C A N VG  V+   +L++
Sbjct: 64  DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQI 104

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSI 63
          PP IR  P N   TV   GT  L C A+G+PVP+I+W +KD  L S +    K LE   +
Sbjct: 8  PPVIRQGPVN--QTVAVDGTFVLSCVATGSPVPTILW-RKDGVLVSTQDSRIKQLENGVL 64
Query: 64 TLEKVDRHQAGVYQCTATNGVGD 86
           +        G Y C A+   G+
Sbjct: 65 QIRYAKLGDTGRYTCIASTPSGE 87

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 11/121 (9%)
Query: 25  GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQ-------AGVYQ 77
           GG  +  C+A+G+P P I+W+KK   + +    +  F      V R Q         +Y+
Sbjct: 21  GGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE 80
Query: 78  CTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD 136
           C A+N VG+ ++V   L VL +  +P G  +++     L+ V+R +     C A+ G  D
Sbjct: 81  CVASNNVGE-ISVSTRLTVLREDQIPRGFPTID-MGPQLKVVERTRTATMLCAAS-GNPD 137
Query: 137 P 137
           P
Sbjct: 138 P 138

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 5/82 (6%)
Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGFSIT 64
          PP I   P+N  L V   GT  L+CKA+G+P+P I W K+  + P  +      E  ++ 
Sbjct: 8  PPIILQGPANQTLAVD--GTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65
Query: 65 LEKVDRHQAGVYQCTATNGVGD 86
          ++ +     G Y C AT+  G+
Sbjct: 66 IKNLRISDTGTYTCVATSSSGE 87

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 4  LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL--PSGEKSLEG- 60
          L+ V P+I  +  N   ++  G +I + C ASGNP P I+W K + +L   SG    +G 
Sbjct: 6  LERVAPTITGNLENQTTSI--GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN 63
Query: 61 FSITLEKVDRHQAGVYQCTATNGVG 85
           ++T+ +V +   G+Y C A + +G
Sbjct: 64 RNLTIRRVRKEDEGLYTCQACSVLG 88

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 26/99 (26%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL------- 58
            VPP     P++      +G    +ECKA G P P + W K     P   K L       
Sbjct: 712 YVPPRWILEPTDKAFA--QGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR 769
Query: 59  -EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
            E  ++ ++ + +   G Y C A NG+G  ++  + + V
Sbjct: 770 VEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISV 808

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 30  LECKASGNPVPSIIWSKKDSSL-----------PSGEKSLEGFSITLEKVDRHQAGVYQC 78
           +ECKASGNP+P IIW + D +              G+     F     + + H A VY C
Sbjct: 59  IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH-AQVYAC 117
Query: 79  TATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
            A N  G  ++ D+ +  +       +       +  E V R  + V +C   + V D V
Sbjct: 118 LARNQFGSIISRDVHVRAVVAQYYEAD-------VNKEHVIRGNSAVIKCLIPSFVADFV 170
Query: 139 TV 140
            V
Sbjct: 171 EV 172

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 30  LECKASGNPVPSIIWSKKDSSL-----------PSGEKSLEGFSITLEKVDRHQAGVYQC 78
           +ECKASGNP+P IIW + D +              G+     F     + + H A VY C
Sbjct: 24  IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH-AQVYAC 82
Query: 79  TATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
            A N  G  ++ D+ +  +       +       +  E V R  + V +C   + V D V
Sbjct: 83  LARNQFGSIISRDVHVRAVVAQYYEAD-------VNKEHVIRGNSAVIKCLIPSFVADFV 135
Query: 139 TV 140
            V
Sbjct: 136 EV 137

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 3/81 (3%)
Query: 9  PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---EGFSITL 65
          P+I     +   T  +G  +T  C+ASG+P P+I W +    +   EK +       +T+
Sbjct: 3  PAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV 62
Query: 66 EKVDRHQAGVYQCTATNGVGD 86
            +     G Y C ATN  G+
Sbjct: 63 RNIINSDGGPYVCRATNKAGE 83

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 19/122 (15%)
Query: 30  LECKASGNPVPSIIWSKKDSSL-----------PSGEKSLEGFSITLEKVDRHQAGVYQC 78
           +ECKASGNP+P IIW + D +              G+     F     + + H A VY C
Sbjct: 30  IECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVH-AQVYAC 88
Query: 79  TATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
            A N  G  ++ D+ +  +       +       +  E V R  + V +C   + V D V
Sbjct: 89  LARNQFGSIISRDVHVRAVVAQYYEAD-------VNKEHVIRGNSAVIKCLIPSFVADFV 141
Query: 139 TV 140
            V
Sbjct: 142 EV 143

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 5/85 (5%)
Query: 4   LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL--PSGEKSLEG- 60
           L+ V P+I  +  N   ++  G +I + C ASGNP P I+W K + +L   SG    +G 
Sbjct: 662 LERVAPTITGNLENQTTSI--GESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGN 719
Query: 61  FSITLEKVDRHQAGVYQCTATNGVG 85
            ++T+ +V +   G+Y C A + +G
Sbjct: 720 RNLTIRRVRKEDEGLYTCQACSVLG 744

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 30/96 (31%), Positives = 44/96 (45%), Gaps = 9/96 (9%)
Query: 18  GQLTVRKGGTITLECKASGNPVPSIIWS------KKDSSLPSGEKSLEGFSITLEKVDRH 71
           G LTV++G    ++CK SG P P + W       + DS+     +     S+ +E V   
Sbjct: 17  GDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSR 76
Query: 72  QAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKS 107
            AG+Y C ATN  G       +LE++     SG  S
Sbjct: 77  DAGIYTCIATNRAGQ---NSFSLELVVAAKESGPSS 109

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/121 (30%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 25  GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQA-------GVYQ 77
           GG  +  C+A+G+P P + W+KK   + S       F  +   V R Q         +Y+
Sbjct: 21  GGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENIYE 80
Query: 78  CTATNGVGDPVTVDMTLEVLCK-ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD 136
           C A N  G+ VTV   L VL +  LP G  +++     L+ V+R +     C A+ G  D
Sbjct: 81  CVAQNPHGE-VTVHAKLTVLREDQLPPGFPNID-MGPQLKVVERTRTATMLCAAS-GNPD 137
Query: 137 P 137
           P
Sbjct: 138 P 138

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 20  LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG-------FSITLEKVDRHQ 72
           L V    T+   C A+GNP PSI W K       GE  + G       +S+ +E V    
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREF-RGEHRIGGIKLRHQQWSLVMESVVPSD 191
Query: 73  AGVYQCTATNGVGDPVTVDMTLEVL 97
            G Y C   N  G  +    TL+VL
Sbjct: 192 RGNYTCVVENKFGS-IRQTYTLDVL 215

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/102 (30%), Positives = 44/102 (43%), Gaps = 13/102 (12%)
Query: 6  MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS--------GEKS 57
          M PP     P N  +++ +G    ++ K SG P P + W     ++ S         EK 
Sbjct: 3  MGPPRFIQVPEN--MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60
Query: 58 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
          L   S+  E V    AG Y C A N  G+  T  + L+VL K
Sbjct: 61 LH--SLIFEVVRASDAGAYACVAKNRAGE-ATFTVQLDVLAK 99

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/85 (32%), Positives = 36/85 (42%), Gaps = 9/85 (10%)
Query: 20  LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG-------FSITLEKVDRHQ 72
           L V    T+   C A+GNP PSI W K       GE  + G       +S+ +E V    
Sbjct: 25  LAVPAANTVRFRCPAAGNPTPSISWLKNGREF-RGEHRIGGIKLRHQQWSLVMESVVPSD 83
Query: 73  AGVYQCTATNGVGDPVTVDMTLEVL 97
            G Y C   N  G  +    TL+VL
Sbjct: 84  RGNYTCVVENKFGS-IRQTYTLDVL 107

>pdb|3K0W|A Chain A, Crystal Structure Of The Tandem Ig-Like C2-Type 2 Domains Of The Human Mucosa-Associated Lymphoid Tissue Lymphoma Translocation Protein 1 Length = 218

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 5/107 (4%)
Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           +VP   + + +     V  G  + L C+A+G+P     W K +  +P+G  S     +  
Sbjct: 14  LVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS----ELIF 69
Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFS 112
             V    AG Y C   N      +    L+V C I  S ++S++G S
Sbjct: 70  NAVHVKDAGFYVCRVNNNFTFEFSQWSQLDV-CDIPESFQRSVDGVS 115

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 5/70 (7%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGFSITLEKVDRHQAGV 75
          TV          KA+G P P+ IW+K   ++  G K        GF + + K D   +G+
Sbjct: 17 TVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGL 76
Query: 76 YQCTATNGVG 85
          Y CT  N  G
Sbjct: 77 YTCTVKNSAG 86

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSK--KDSSLPSGEKSLEGF----------SITLEKV 68
          T  + G +TL C A G P+P I W +     +   G+KSL+G           S+ ++ V
Sbjct: 11 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 70
Query: 69 DRHQAGVYQCTATNGVG 85
              +G Y C A + +G
Sbjct: 71 KLSDSGRYDCEAASRIG 87

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 12/77 (15%)
Query: 21 TVRKGGTITLECKASGNPVPSIIWSK--KDSSLPSGEKSLEGF----------SITLEKV 68
          T  + G +TL C A G P+P I W +     +   G+KSL+G           S+ ++ V
Sbjct: 11 TTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDV 70
Query: 69 DRHQAGVYQCTATNGVG 85
              +G Y C A + +G
Sbjct: 71 KLSDSGRYDCEAASRIG 87

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSK-----KDSSLPSGEKSLEG--FSITLEKVDRHQ 72
          + V +G T T E   SG PVP + W +       S+LP  + S       +T+  V +  
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKAN 74
Query: 73 AGVYQCTATNGVGDPVTVDMTLEVLCK 99
          +G Y   ATNG G   +   T E+L K
Sbjct: 75 SGRYSLKATNGSGQATS---TAELLVK 98

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 39.3 bits (90), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 10/87 (11%)
Query: 20 LTVRKGGTITLECKASGNPVPSIIWSK-----KDSSLPSGEKSLEG--FSITLEKVDRHQ 72
          + V +G T T E   SG PVP + W +       S+LP  + S       +T+  V +  
Sbjct: 15 VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKAN 74
Query: 73 AGVYQCTATNGVGDPVTVDMTLEVLCK 99
          +G Y   ATNG G   +   T E+L K
Sbjct: 75 SGRYSLKATNGSGQATS---TAELLVK 98

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	3e-29
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-26
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-18
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-26
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-21
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-17
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	6e-15
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-26
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	6e-15
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-13
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-25
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-19
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-16
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-13
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-24
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-17
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-24
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-15
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-23
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-14
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-11
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-23
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-20
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-23
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	4e-23
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-20
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-19
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	7e-23
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	7e-23
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	4e-19
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	8e-23
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	1e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	9e-23
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	9e-23
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-16
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	7e-22
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-19
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	8e-22
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-20
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	9e-18
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-17
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-21
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-20
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-18
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-21
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-19
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-14
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-21
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-13
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	3e-21
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-19
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-20
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-19
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-18
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-13
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	4e-21
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-21
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	1e-18
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	8e-17
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-10
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	5e-21
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-18
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	7e-21
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	4e-20
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	9e-21
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-16
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	9e-21
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-20
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	2e-20
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-20
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	5e-20
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-18
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	5e-20
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	6e-16
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	6e-20
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	2e-17
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-19
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-18
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-18
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-10
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	2e-19
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-19
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-19
2ens_A	96	Advanced glycosylation END product-specific recept	3e-19
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	5e-19
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	7e-19
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	7e-19
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-19
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-17
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	6e-15
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-18
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-15
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	3e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-17
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-17
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	7e-13
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-04
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-18
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-11
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-18
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-13
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	2e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-18
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	3e-17
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-18
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-18
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	8e-18
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-16
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-15
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	9e-18
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-17
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	6e-15
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	8e-15
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-17
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-10
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	1e-17
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	2e-17
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	6e-17
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	4e-12
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	3e-08
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	9e-17
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-16
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-16
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-15
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-10
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	2e-16
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-16
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-07
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	3e-16
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-16
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	7e-16
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	4e-16
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-16
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	1e-07
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	7e-16
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	8e-16
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	3e-07
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	9e-16
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-15
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-14
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	9e-16
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	9e-16
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-15
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-15
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-06
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-15
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-06
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	2e-15
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-15
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	7e-13
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-09
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-07
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-04
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-15
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-15
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	4e-15
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	4e-15
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-12
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	5e-15
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-14
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-08
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-14
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-11
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	4e-14
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	5e-14
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-09
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	8e-14
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-13
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	9e-14
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-13
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	2e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	4e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	7e-13
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	3e-13
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-05
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-13
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-07
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-10
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-12
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-10
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-12
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-12
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	5e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-07
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-12
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-12
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-11
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	6e-09
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	5e-12
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-11
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-08
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	5e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	8e-12
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-10
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	8e-12
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-05
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	9e-12
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-11
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-11
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	3e-11
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	8e-11
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	1e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-10
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	9e-09
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-10
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	2e-08
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	3e-10
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-10
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-10
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	6e-10
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-09
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	2e-09
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-09
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-09
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-09
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-09
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-09
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-08
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	5e-05
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	4e-09
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	6e-09
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	7e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-06
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	7e-09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	7e-09
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	1e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	1e-08
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-08
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	2e-08
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-07
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-08
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	2e-04
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-07
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-08
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	5e-08
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	8e-08
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	9e-08
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-07
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-07
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-06
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	3e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	6e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	9e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	7e-06
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-05
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	1e-05
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	1e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	1e-05
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	1e-05
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	2e-05
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	2e-05
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	2e-05
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	3e-05
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	3e-05
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	5e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	3e-05
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	3e-05
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	5e-05
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	6e-05
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	7e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	9e-05
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	2e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	3e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	3e-04
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	4e-04
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	4e-04
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	7e-04
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	7e-04

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score =  104 bits (261), Expect = 3e-29
 Identities = 43/190 (22%), Positives = 60/190 (31%), Gaps = 48/190 (25%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----S 57
           E+L    P I T      +        T  C     P P I W++    +   +      
Sbjct: 2   EKLP-KAPVITTPLET--VDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR 58

Query: 58  LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK----ILPSGEKSLEGFSI 113
             G  +T+  V+    G+Y CTA NGVG  V     L+V  K      P   K +EG   
Sbjct: 59  ENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKA 118

Query: 114 TLE-------------------------------------KVDRHQAGVYQCTATNGVGD 136
            L                                       V +  AG Y+C A N +G 
Sbjct: 119 VLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSLGT 178

Query: 137 PVTVDMTLEV 146
             +  + LEV
Sbjct: 179 AYSKLVKLEV 188

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 97.2 bits (242), Expect = 1e-26
 Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 45/182 (24%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-------SLEG 60
              +  +P    LTV +G  + L C   G   P I W K  + + + ++           
Sbjct: 2   GLKLMGAPVK--LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59

Query: 61  FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK----ILPSGEKSLEGFSITLE 116
             ++L+ V+R  AG Y C   +G    ++  + L V       + P            L 
Sbjct: 60  GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119

Query: 117 --------------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTL 144
                                                Q+ ++ C A N  G   +   T+
Sbjct: 120 CEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATV 179

Query: 145 EV 146
            +
Sbjct: 180 HL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 76.8 bits (189), Expect = 1e-18
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 7/91 (7%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITL 65
             P     P +  L V       L C+A G P P +I+W +  + +     S       L
Sbjct: 97  GVPFFTVEPKD--LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPS----PSVL 150

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                 Q+ ++ C A N  G   +   T+ +
Sbjct: 151 NVTGVTQSTMFSCEAHNLKGLASSRTATVHL 181

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  101 bits (252), Expect = 2e-26
 Identities = 32/187 (17%), Positives = 54/187 (28%), Gaps = 50/187 (26%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-------SLE 59
             P  +    +  +  + G    + C    NP+    + K    +    +          
Sbjct: 211 GEPVPQYVSKD--MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTS 268

Query: 60  GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL---------------------- 97
           G  +  +       GVY C   NGVG P    + L V+                      
Sbjct: 269 GKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVT 328

Query: 98  --CKI----------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVT 139
             CK+                L  G  ++    + ++ V     G Y C ATN  GD   
Sbjct: 329 IPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGD-KY 387

Query: 140 VDMTLEV 146
            +  ++V
Sbjct: 388 FETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 86.9 bits (215), Expect = 4e-21
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           +  P     P    + V++G  +T+ CK +G P P+++WS     L  G  ++    + +
Sbjct: 306 VSAPKYEQKPEK-VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVI 364

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           + V     G Y C ATN  GD    +  ++V
Sbjct: 365 KGVKNGDKGYYGCRATNEHGD-KYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 76.1 bits (187), Expect = 2e-17
 Identities = 32/198 (16%), Positives = 49/198 (24%), Gaps = 59/198 (29%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKS----LEGF 61
             P ++  P+   +  R+     LEC   GN       W K   S    E +     +  
Sbjct: 5   KYPVLKDQPAE--VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG 62

Query: 62  SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC----KILPSGEKSLEGFSITLE- 116
           S+   +      G YQC A    G   +  ++               +  +EG    L+ 
Sbjct: 63  SLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDC 122

Query: 117 -----------------------------------------------KVDRHQAGVYQCT 129
                                                          K D      Y CT
Sbjct: 123 VLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCT 182

Query: 130 ATNGVGDPVTVDMTLEVL 147
           A N   D   V +  E+ 
Sbjct: 183 AKNAAVDEEVVLVEYEIK 200

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 69.6 bits (170), Expect = 6e-15
 Identities = 32/210 (15%), Positives = 48/210 (22%), Gaps = 71/210 (33%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECK-ASGNPVPSIIWSKKDSSLPSGEKSLEG---FS 62
              +          T  +G    L+C   +  P P I W K+ S         +     +
Sbjct: 99  YLIASPAKTHE--KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRIT 156

Query: 63  IT---------LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC--------------K 99
                      + K D      Y CTA N   D   V +  E+                +
Sbjct: 157 AGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQ 216

Query: 100 ILPSGEKSLEGFSITLE------------------------------------------K 117
            +     +  G    +                                            
Sbjct: 217 YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 276

Query: 118 VDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
                 GVY C   NGVG P    + L V+
Sbjct: 277 TLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  100 bits (250), Expect = 4e-26
 Identities = 44/183 (24%), Positives = 59/183 (32%), Gaps = 45/183 (24%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
           Q  P      P++       G  +TLEC A GNPVP I W K D S  S   S E   + 
Sbjct: 204 QYAPSIKAKFPAD--TYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP-LLH 260

Query: 65  LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-----------------------CK-- 99
           ++ VD    G Y+C A N  G   T    + +                        C   
Sbjct: 261 IQNVDFEDEGTYECEAENIKGR-DTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVAS 319

Query: 100 ---------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144
                          +       + G  +   K+    +G+YQC A N  G  V     L
Sbjct: 320 GKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT-VYASAEL 378

Query: 145 EVL 147
            V 
Sbjct: 379 TVQ 381

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 69.5 bits (170), Expect = 6e-15
 Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 21/141 (14%)

Query: 8   PPSIRTSPSNGQLTVRKGG---TITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEG 60
            P     P++      +G     +TL C+A  NP  +  W    + L  G  S    + G
Sbjct: 4   GPVFEEQPAH--TLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61

Query: 61  FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEK--- 117
             +    V    AG YQC ATN  G  V+ + +L             L+ FS        
Sbjct: 62  DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRF---------GFLQEFSAEERDPVK 112

Query: 118 VDRHQAGVYQCTATNGVGDPV 138
           +      ++ C+         
Sbjct: 113 ITEGWGVMFTCSPPPHYPALS 133

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 64.1 bits (156), Expect = 4e-13
 Identities = 28/200 (14%), Positives = 50/200 (25%), Gaps = 58/200 (29%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGE-----K 56
           +   +            + + +G  +   C      P  S  W   +             
Sbjct: 96  RFGFLQEFSAEERDP--VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFV 153

Query: 57  SLEGFSITLEKVDRHQAGVYQCTATNGVGD------------PVTVDMTLEVLCKIL--- 101
           S    ++ + K +    G Y C AT+ +               +  +   +    I    
Sbjct: 154 SQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKF 213

Query: 102 PSGEKSLEGFSITLE----------------------------------KVDRHQAGVYQ 127
           P+   +L G  +TLE                                   VD    G Y+
Sbjct: 214 PADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYE 273

Query: 128 CTATNGVGDPVTVDMTLEVL 147
           C A N  G   T    + + 
Sbjct: 274 CEAENIKGR-DTYQGRIIIH 292

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 98.4 bits (245), Expect = 2e-25
 Identities = 41/185 (22%), Positives = 61/185 (32%), Gaps = 46/185 (24%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
           +  P      P    +   KG T+ LEC A GNPVP+I+W + D    + +      +  
Sbjct: 202 EYEPKIEVQFPET--VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI 259

Query: 65  L--EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-----------------------CK 99
           L      +  AG Y+C A N  G        L                          CK
Sbjct: 260 LEIPNFQQEDAGSYECVAENSRGK-NVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECK 318

Query: 100 -----------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM 142
                            +L      +E  ++ +  V+   AG+YQC A N  G  +    
Sbjct: 319 ANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGV-IFSSA 377

Query: 143 TLEVL 147
            L V+
Sbjct: 378 ELSVI 382

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 82.2 bits (203), Expect = 1e-19
 Identities = 24/95 (25%), Positives = 44/95 (46%), Gaps = 4/95 (4%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSIT 64
              P+     ++  + V    ++  ECKA+G P P+  W K    L + ++  +E  ++ 
Sbjct: 293 YAQPNWVQIIND--IHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLN 350

Query: 65  LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
           +  V+   AG+YQC A N  G  +     L V+ +
Sbjct: 351 ITIVNLSDAGMYQCVAENKHGV-IFSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 73.7 bits (181), Expect = 2e-16
 Identities = 35/139 (25%), Positives = 50/139 (35%), Gaps = 17/139 (12%)

Query: 8   PPSIRTSPSN-GQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
            P     PS+       +   + L C+  GNP P I W    + +  G     S+   S+
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSL 64

Query: 64  TLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEK---VD 119
            +   ++ Q AG YQC ATN  G  V+ +  L+            LE F         V 
Sbjct: 65  LINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFA---------YLENFKTRTRSTVSVR 115

Query: 120 RHQAGVYQCTATNGVGDPV 138
           R Q  V  C      G+  
Sbjct: 116 RGQGMVLLCGPPPHSGELS 134

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 63.3 bits (154), Expect = 7e-13
 Identities = 29/196 (14%), Positives = 55/196 (28%), Gaps = 57/196 (29%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK---SLEGFS 62
              + +T   +  ++VR+G  + L C     +   S  W   +       +   S E  +
Sbjct: 100 YLENFKTRTRS-TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGN 158

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKS--------------L 108
           + + KV++   G Y C  TN V +   +     ++ +      +                
Sbjct: 159 LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAE 218

Query: 109 EGFSITLE-------------------------------------KVDRHQAGVYQCTAT 131
           +G ++ LE                                        +  AG Y+C A 
Sbjct: 219 KGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAE 278

Query: 132 NGVGDPVTVDMTLEVL 147
           N  G        L   
Sbjct: 279 NSRGK-NVAKGQLTFY 293

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 93.0 bits (231), Expect = 1e-24
 Identities = 32/179 (17%), Positives = 51/179 (28%), Gaps = 56/179 (31%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
               I  +P +    V  G  + L C+A+G+P     W K +  +P+G  S     +   
Sbjct: 17  RGSKITVNPES--KAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS----ELIFN 70

Query: 67  KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK-------------------ILPSGEKS 107
            V    AG Y C   N      +    L+V                      + P+ +K 
Sbjct: 71  AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130

Query: 108 LEGFSITLE-------------------------------KVDRHQAGVYQCTATNGVG 135
           + G ++ L+                                VD    G Y C   N   
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPYVDLEHQGTYWCHVYNDRD 189

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 73.8 bits (181), Expect = 3e-17
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 6/84 (7%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF 61
           + +      I   P++    +  G T+ L+C A G+P+P   W K +  L    K     
Sbjct: 112 DGVSESKLQICVEPTS--QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK---- 165

Query: 62  SITLEKVDRHQAGVYQCTATNGVG 85
              +  VD    G Y C   N   
Sbjct: 166 LYMVPYVDLEHQGTYWCHVYNDRD 189

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 93.8 bits (233), Expect = 1e-23
 Identities = 41/188 (21%), Positives = 64/188 (34%), Gaps = 47/188 (25%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
           +  P  +    +     V +G  + LEC ASG P P I W KK   LPS +   E F+  
Sbjct: 217 ERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKA 276

Query: 65  L--EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-----------------------CK 99
           L    V    +G Y C A+N +G  +   +++ V                        C+
Sbjct: 277 LRITNVSEEDSGEYFCLASNKMGS-IRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR 335

Query: 100 I--------------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVT 139
                                 P+  + + G +I           VYQC  +N  G  + 
Sbjct: 336 ANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEHGY-LL 394

Query: 140 VDMTLEVL 147
            +  + VL
Sbjct: 395 ANAFVSVL 402

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 67.2 bits (164), Expect = 3e-14
 Identities = 31/143 (21%), Positives = 46/143 (32%), Gaps = 18/143 (12%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--------- 56
             PP+I    +     V     I +EC+A GNP PS  W++        +          
Sbjct: 14  TQPPTITKQSAK-DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS 72

Query: 57  -SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITL 115
            +L               G YQC A N  G  ++  + L+V      S        ++  
Sbjct: 73  GTLV-IDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV------SKSPLWPKENLDP 125

Query: 116 EKVDRHQAGVYQCTATNGVGDPV 138
             V        QC    G+  PV
Sbjct: 126 VVVQEGAPLTLQCNPPPGLPSPV 148

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 34/199 (17%), Positives = 52/199 (26%), Gaps = 60/199 (30%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK---SLEGFS 62
             P          + V++G  +TL+C    G P P I W        + +K         
Sbjct: 114 KSPLWPKEN-LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD 172

Query: 63  ITLEKVDRH-QAGVYQCTATNGVGDP---------------------------------- 87
           +    V        Y C A                                         
Sbjct: 173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQ 232

Query: 88  -VTVDMTLEVLC----------------KILPSGEKSLEGFSITL--EKVDRHQAGVYQC 128
            V   M L + C                  LPS +   E F+  L    V    +G Y C
Sbjct: 233 MVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFC 292

Query: 129 TATNGVGDPVTVDMTLEVL 147
            A+N +G  +   +++ V 
Sbjct: 293 LASNKMGS-IRHTISVRVK 310

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 91.3 bits (227), Expect = 2e-23
 Identities = 36/191 (18%), Positives = 58/191 (30%), Gaps = 52/191 (27%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEG 60
           M PP     P +  + +  G + T +C  +G     I W+K +  +  G           
Sbjct: 3   MAPPFFDLKPVS--VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60

Query: 61  FSITLEKVDRHQAGVYQCTATNGVG-----------------------DPVTVDMTLEVL 97
            ++T+ KV +  AG Y C A+N  G                         V  D      
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYE 120

Query: 98  CK-----------------ILPSGE----KSLEGFSITLEKVDRHQAGVYQCTATNGVGD 136
           CK                 I  S +           + +  +    +G Y C A N  G 
Sbjct: 121 CKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS 180

Query: 137 PVTVDMTLEVL 147
             +   +L+V 
Sbjct: 181 -ASSSTSLKVK 190

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 83.6 bits (207), Expect = 2e-20
 Identities = 37/189 (19%), Positives = 62/189 (32%), Gaps = 52/189 (27%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGF 61
            PP         +  V++      ECK  G+P   ++W K ++ +    K          
Sbjct: 97  EPPRFIKKLEPSR-IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVA 155

Query: 62  SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-----------------------C 98
            + +  +    +G Y C A N  G   +   +L+V                        C
Sbjct: 156 VLEMYNLSVEDSGDYTCEAHNAAGS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC 214

Query: 99  KI----------------LPSGEK---SLEGFSITLE--KVDRHQAGVYQCTATNGVGDP 137
           ++                L SG+K     E F  ++    VD    G YQC A+N VG  
Sbjct: 215 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS- 273

Query: 138 VTVDMTLEV 146
            T   ++ +
Sbjct: 274 YTCVGSITL 282

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 88.8 bits (220), Expect = 3e-23
 Identities = 30/190 (15%), Positives = 47/190 (24%), Gaps = 53/190 (27%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP--SIIWSKKDSSLPSGEKSLEGFSIT 64
             P I TS     +       +TL+C  + +        W+K    L +  K+       
Sbjct: 2   NEPRIVTSEEV--IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYR 59

Query: 65  LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL--PSGEKSLEGFSITLE------ 116
           + K     +G Y C             + ++    I      E   EG    +       
Sbjct: 60  INKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGY 119

Query: 117 --------------------KVDRHQ--------------------AGVYQCTATNGVGD 136
                                  R                       G Y+C ATN +G 
Sbjct: 120 PHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGS 179

Query: 137 PVTVDMTLEV 146
             +V   L V
Sbjct: 180 -ASVSTVLRV 188

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 90.7 bits (225), Expect = 4e-23
 Identities = 27/194 (13%), Positives = 52/194 (26%), Gaps = 56/194 (28%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFS 62
                + +P+      ++G    + C    +  P+IIW  K   +   +      L    
Sbjct: 99  QKLMFKNAPTP--QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 156

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPV-TVDMTLEVL------------------------ 97
           + +  + +   G Y+C         +   D+ + V                         
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTL 216

Query: 98  -CK-----------------ILPSGEKSLEGFSI------TLEKVDRHQAGVYQCTATNG 133
            C                  I    E   +          T+  VD++    Y C A N 
Sbjct: 217 VCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENK 276

Query: 134 VGDPVTVDMTLEVL 147
            G+     + L+V 
Sbjct: 277 AGE-QDASIHLKVF 289

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 82.6 bits (204), Expect = 5e-20
 Identities = 22/192 (11%), Positives = 52/192 (27%), Gaps = 55/192 (28%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSGEKS--------LE 59
             +   PS     +  G +    C+ +G+     I W   +    S  +          +
Sbjct: 3   LQVDIVPSQ--GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD 60

Query: 60  GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL---------------------- 97
             ++T+   +   AG+Y+C  T   G      + +++                       
Sbjct: 61  SSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVI 120

Query: 98  -CK-----------------ILPSGE---KSLEGFSITLEKVDRHQAGVYQCTATNGVGD 136
            C                  ++   +     L    + +  + +   G Y+C        
Sbjct: 121 VCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARG 180

Query: 137 PV-TVDMTLEVL 147
            +   D+ + V 
Sbjct: 181 EINFKDIQVIVN 192

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 81.5 bits (201), Expect = 1e-19
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 8/100 (8%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
           VPP+++   S    T   G ++TL C A G P P++ W+K    + + E+  E    + +
Sbjct: 193 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 252

Query: 67  -------KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
                   VD++    Y C A N  G+     + L+V  K
Sbjct: 253 SSELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLKVFAK 291

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 86.0 bits (213), Expect = 7e-23
 Identities = 36/107 (33%), Positives = 47/107 (43%), Gaps = 14/107 (13%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-------- 54
           + +  PP I   PS+  L V KG   TL CKA G P P+I W K    + +         
Sbjct: 4   RQEDFPPRIVEHPSD--LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61

Query: 55  ----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
                 SL    I   +  R   GVY C A N +G+ V+ D +LEV 
Sbjct: 62  MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 88.7 bits (220), Expect = 7e-23
 Identities = 45/197 (22%), Positives = 67/197 (34%), Gaps = 58/197 (29%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFS 62
            PP I   P N    VR GG  +  C A G+P PSI+W K    +   +       +   
Sbjct: 5   HPPEIIRKPQN--QGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG 62

Query: 63  ITLEKVDRHQ----AGVYQCTATNGVGDPVTVDMTLEVL--------------------- 97
           I++ +++  +       Y+C A NGVGD V+ D TL +                      
Sbjct: 63  ISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVI 122

Query: 98  ---------CK-----------------ILPSGE-KSLEGFSITLEKVDRHQAGVYQCTA 130
                    CK                 +  S    SL+   + +E       G Y+C A
Sbjct: 123 EVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVA 182

Query: 131 TNGVGDPVTVDMTLEVL 147
            N +G   +    L V 
Sbjct: 183 ENSMGTEHSKATNLYVK 199

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 78.7 bits (194), Expect = 4e-19
 Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 4/99 (4%)

Query: 1   MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SL 58
            ++     P I   P      +  G T+ + CKA GNP P+I W K  + +       SL
Sbjct: 103 GDKTPAGFPVITQGPGT--RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL 160

Query: 59  EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
           +   + +E       G Y+C A N +G   +    L V 
Sbjct: 161 KDGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 88.5 bits (219), Expect = 8e-23
 Identities = 36/207 (17%), Positives = 58/207 (28%), Gaps = 70/207 (33%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------------ 56
            S+ T+ S+  + V +  +I L C  SG   P + W     S  +               
Sbjct: 2   GSVYTAQSD--VQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADR 59

Query: 57  -SLEGFSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL----------------- 97
            +     IT   V R   G Y C  +   G +   V + L VL                 
Sbjct: 60  VTFSSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIG 119

Query: 98  ------CK------------------ILPSGEKSLEGF------------SITLEKVDRH 121
                 C                   +L +  K    F             +  + V   
Sbjct: 120 NRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAF 179

Query: 122 QAGVYQCTATNGVGDPV-TVDMTLEVL 147
            +G Y C A NG G  + +    ++ +
Sbjct: 180 DSGEYYCQAQNGYGTAMRSEAAHMDAV 206

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 66.9 bits (163), Expect = 1e-14
 Identities = 22/107 (20%), Positives = 37/107 (34%), Gaps = 17/107 (15%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK-------- 56
           +VPPS  T       +V  G    L C    G+P     W K   S+ + +         
Sbjct: 102 LVPPSKPTISVP--SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159

Query: 57  -----SLEGFSITLEKVDRHQAGVYQCTATNGVGDPV-TVDMTLEVL 97
                  +   +  + V    +G Y C A NG G  + +    ++ +
Sbjct: 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV 206

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 88.3 bits (219), Expect = 9e-23
 Identities = 50/200 (25%), Positives = 72/200 (36%), Gaps = 57/200 (28%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------ 56
           + +  PP I   PS+  L V KG   TL CKA G P P+I W K    + + +       
Sbjct: 4   RQEDFPPRIVEHPSD--LIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHR 61

Query: 57  ------SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL------------- 97
                 SL    I   +  R   GVY C A N +G+ V+ D +LEV              
Sbjct: 62  MLLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDV 121

Query: 98  -----------CK-----------------ILPSGEK--SLEGFSITLEKVDRHQAGVYQ 127
                      C+                  L   ++  ++ G  + +    +  AG Y 
Sbjct: 122 MVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYV 181

Query: 128 CTATNGVGDPVTVDMTLEVL 147
           C  TN VG+  +    L VL
Sbjct: 182 CVGTNMVGERESEVAELTVL 201

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 88.1 bits (218), Expect = 9e-23
 Identities = 34/205 (16%), Positives = 55/205 (26%), Gaps = 67/205 (32%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----------- 56
             S+    S  ++ + +   + L C  SG   P + W                       
Sbjct: 2   MGSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 57  --SLEGFSITLEKVDRHQAGVYQCTATNGVGDPV-TVDMTLEVL---------------- 97
             +     IT + V R   G Y C  +   G+    V + L VL                
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATI 121

Query: 98  -------CK-----------------ILPSGEKSLEGF------------SITLEKVDRH 121
                  C                  ++P+  KS   F             +  + +   
Sbjct: 122 GNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSAS 181

Query: 122 QAGVYQCTATNGVGDPVTVDMTLEV 146
             G Y C A NG G P+T    + +
Sbjct: 182 DTGEYSCEARNGYGTPMT-SNAVRM 205

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 70.4 bits (172), Expect = 7e-16
 Identities = 25/104 (24%), Positives = 36/104 (34%), Gaps = 16/104 (15%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLEGF--- 61
           +VPPS  T       +   G    L C    G+P     W K    +P+  KS   F   
Sbjct: 105 LVPPSKPTVNIP--SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162

Query: 62  ---------SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                     +  + +     G Y C A NG G P+T    + +
Sbjct: 163 SYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMT-SNAVRM 205

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 87.6 bits (217), Expect = 7e-22
 Identities = 40/192 (20%), Positives = 58/192 (30%), Gaps = 51/192 (26%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---- 57
           +QL    P+I   P      V +  T T+ C ASGNP P I W K    +     +    
Sbjct: 102 DQLPSGFPNIDMGPQL--KVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIK 159

Query: 58  -LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL------------------- 97
            L   ++ +E  +    G Y+C ATN  G   +    L V                    
Sbjct: 160 QLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMP 219

Query: 98  -------CKI----------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 134
                  C                  L   +    G    LE  D   +  Y C A + +
Sbjct: 220 GGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVG-RNVLELTDVKDSANYTCVAMSSL 278

Query: 135 GDPVTVDMTLEV 146
           G  +     + V
Sbjct: 279 GV-IEAVAQITV 289

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 80.6 bits (199), Expect = 3e-19
 Identities = 33/140 (23%), Positives = 56/140 (40%), Gaps = 17/140 (12%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEG 60
            PP     P +       GG  +  C+A+G+P P + W+KK   + S            G
Sbjct: 5   EPPRFIKEPKD--QIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAG 62

Query: 61  FSITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLE--K 117
             + ++ +   +   VY+C A N VG+ +TV   L VL +             +  +   
Sbjct: 63  AVLRIQPLRTPRDENVYECVAQNSVGE-ITVHAKLTVLRE--DQLPSGFPNIDMGPQLKV 119

Query: 118 VDRHQAGVYQCTATNGVGDP 137
           V+R +     C A+   G+P
Sbjct: 120 VERTRTATMLCAAS---GNP 136

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 89.1 bits (221), Expect = 8e-22
 Identities = 36/190 (18%), Positives = 58/190 (30%), Gaps = 52/190 (27%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGF 61
           VPP     P +  + +  G + T +C  +G     I W+K +  +  G            
Sbjct: 196 VPPFFDLKPVS--VDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA 253

Query: 62  SITLEKVDRHQAGVYQCTATNGVGD-----------------------PVTVDMTLEVLC 98
           ++T+ KV +  AG Y C A+N  G                         V  D      C
Sbjct: 254 TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYEC 313

Query: 99  KI----------------LPSGEK-----SLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
           KI                +    K           + +  +    +G Y C A N  G  
Sbjct: 314 KIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAGS- 372

Query: 138 VTVDMTLEVL 147
            +   +L+V 
Sbjct: 373 ASSSTSLKVK 382

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 86.8 bits (215), Expect = 6e-21
 Identities = 44/192 (22%), Positives = 60/192 (31%), Gaps = 54/192 (28%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFS 62
             PP  R  P    +   KG  + LEC+  G P   + W K    L SG+K     E F 
Sbjct: 382 KEPPVFRKKPHP--VETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 439

Query: 63  ITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----------------------- 97
            ++    VD    G YQC A+N VG   T   ++ +                        
Sbjct: 440 TSIHILNVDSADIGEYQCKASNDVGS-DTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQ 498

Query: 98  CK-----------------ILPSGEK---SLEGFSITLE--KVDRHQAGVYQCTATNGVG 135
                              I+   +    S      TL+  + +   AG Y C   N  G
Sbjct: 499 ATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAG 558

Query: 136 DPVTVDMTLEVL 147
                  TL VL
Sbjct: 559 T-QECFATLSVL 569

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 84.9 bits (210), Expect = 3e-20
 Identities = 35/190 (18%), Positives = 58/190 (30%), Gaps = 50/190 (26%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEG 60
             PP         +  V++      ECK  G+P   ++W K ++ +    K         
Sbjct: 288 QEPPRFIKKLEPSR-IVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESV 346

Query: 61  FSITLEKVDRHQAGVYQCTATNGVGD----------------------PVTVDMTLEVLC 98
             + +  +    +G Y C A N  G                              + + C
Sbjct: 347 AVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLEC 406

Query: 99  K----------------ILPSGEK---SLEGFSITLE--KVDRHQAGVYQCTATNGVGDP 137
           +                 L SG+K     E F  ++    VD    G YQC A+N VG  
Sbjct: 407 ELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGS- 465

Query: 138 VTVDMTLEVL 147
            T   ++ + 
Sbjct: 466 DTCVGSITLK 475

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 77.5 bits (191), Expect = 9e-18
 Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 54/190 (28%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
           PP       +  +    G  ITL+CK  G P   I W K+ + L S        +    +
Sbjct: 5   PPYFIEPLEH--VEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62

Query: 65  LE--KVDRHQAGVYQCTATNGVGD-----------------------PVTVDM--TLEVL 97
           L   KVD    G Y C A N VG                         V   +   +   
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122

Query: 98  CKI----------------LPSGEK-----SLEGFSITLEKVDRHQAGVYQCTATNGVGD 136
           C+I                L               ++ + + D+   G Y C+A+N +G 
Sbjct: 123 CRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGT 182

Query: 137 PVTVDMTLEV 146
             +    L +
Sbjct: 183 -ASSSAKLTL 191

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 76.8 bits (189), Expect = 2e-17
 Identities = 32/193 (16%), Positives = 60/193 (31%), Gaps = 54/193 (27%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLE 59
           + +PPS      +  +    G  +  EC+ +G+    + W K    L             
Sbjct: 98  RKLPPSFARKLKD--VHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHN 155

Query: 60  GFSITLEKVDRHQAGVYQCTATNGVGD-----PVTVDM--------------------TL 94
             ++ + + D+   G Y C+A+N +G       +T+                      + 
Sbjct: 156 VATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESG 215

Query: 95  EVLCKI----------------LPSGEK-----SLEGFSITLEKVDRHQAGVYQCTATNG 133
              C +                +  G            ++T+ KV +  AG Y C A+N 
Sbjct: 216 TFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNV 275

Query: 134 VGDPVTVDMTLEV 146
            G   +    L V
Sbjct: 276 AGK-DSCSAQLGV 287

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 88.4 bits (219), Expect = 1e-21
 Identities = 38/185 (20%), Positives = 59/185 (31%), Gaps = 48/185 (25%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFS 62
                    PSN  +   +G    LEC  SG P PS  W + +  +    K    L G +
Sbjct: 219 HRQLYFLQRPSN--VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSN 276

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-----------------------CK 99
           + +  V    +G Y C  T    + ++    L VL                       C 
Sbjct: 277 LLISNVTDDDSGTYTCVVTYKNEN-ISASAELTVLVPPWFLNHPSNLYAYESMDIEFECA 335

Query: 100 -----------------ILPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD 141
                            ++PS   + + G ++ +  V +   G YQC A N  G+     
Sbjct: 336 VSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEAGN-AQSS 394

Query: 142 MTLEV 146
             L V
Sbjct: 395 AQLIV 399

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 84.1 bits (208), Expect = 3e-20
 Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 56/194 (28%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-----KSLEGF 61
            P    +   +  +T   G T+ L+C+  G+P+P+I W K    L           L   
Sbjct: 120 GPLRFLSQTES--ITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSG 177

Query: 62  SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK----------ILPSGEKSLEGF 111
           ++ + ++    +GVY+C+A N        +  + +L              PS   ++EG 
Sbjct: 178 ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGK 237

Query: 112 SITLE--------------------------------------KVDRHQAGVYQCTATNG 133
              LE                                       V    +G Y C  T  
Sbjct: 238 DAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYK 297

Query: 134 VGDPVTVDMTLEVL 147
             + ++    L VL
Sbjct: 298 NEN-ISASAELTVL 310

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 78.7 bits (194), Expect = 3e-18
 Identities = 36/196 (18%), Positives = 65/196 (33%), Gaps = 57/196 (29%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGE---------K 56
                 + PS+      +GG + L C A  +  VP I W K    L  G           
Sbjct: 20  RSLHFVSEPSD--AVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPNG 77

Query: 57  SLEGFSITLEKVDRHQAGVYQCTATNGVG----------------------DPVTVDM-- 92
           SL   +I   +  +   G+YQC A+ G                        + +T  M  
Sbjct: 78  SLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGD 137

Query: 93  TLEVLCKI-------------------LPSGEK--SLEGFSITLEKVDRHQAGVYQCTAT 131
           T+ + C++                   +P   +   L   ++ + ++    +GVY+C+A 
Sbjct: 138 TVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSAR 197

Query: 132 NGVGDPVTVDMTLEVL 147
           N        +  + +L
Sbjct: 198 NPASTRTGNEAEVRIL 213

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 88.2 bits (218), Expect = 2e-21
 Identities = 30/189 (15%), Positives = 50/189 (26%), Gaps = 50/189 (26%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE-GFSIT 64
           +    I  + S+    + +        +    P     W+    S P  +K L+ G+SI+
Sbjct: 322 VEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSIS 381

Query: 65  LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK--ILPSGE----------------- 105
                +HQ G Y   A N      T   TL +  K  +L                     
Sbjct: 382 KFCNHKHQPGEYIFHAENDDAQ-FTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWT 440

Query: 106 ----------------------------KSLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
                                             S TL   +  +  + +C A N +G  
Sbjct: 441 WKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLG-T 499

Query: 138 VTVDMTLEV 146
               + L  
Sbjct: 500 SCETILLNS 508

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 82.1 bits (202), Expect = 3e-19
 Identities = 28/185 (15%), Positives = 50/185 (27%), Gaps = 42/185 (22%)

Query: 4   LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLE 59
             + P S  T      + V    +ITL+         S +W  K SSL         +  
Sbjct: 42  CALRPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRG 101

Query: 60  GFSITLEKVDRHQAGVYQCTATNGVG---------------------DPVTVDMTLEVLC 98
             S+ + K+   QAG Y     +                            ++    ++C
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVC 161

Query: 99  K-----------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD 141
                                  E+S        + +        +C A N +G   T  
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221

Query: 142 MTLEV 146
            T+++
Sbjct: 222 FTIDL 226

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 66.6 bits (162), Expect = 6e-14
 Identities = 22/183 (12%), Positives = 40/183 (21%), Gaps = 53/183 (28%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-PSGEKSLEGFSITLE 66
                          +      L C +   P P + W   DS      E+S        +
Sbjct: 140 TLLYTLRRPY---FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196

Query: 67  KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC--KILPSGEKSLEGFSITLE-------- 116
            +        +C A N +G   T   T+++    +          G  + +         
Sbjct: 197 VLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNH 256

Query: 117 ---------------------------------------KVDRHQAGVYQCTATNGVGDP 137
                                                   V R+  G Y C+++      
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316

Query: 138 VTV 140
             V
Sbjct: 317 ALV 319

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 84.2 bits (208), Expect = 2e-21
 Identities = 27/91 (29%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITL 65
            P  I     +  +    G  +TLEC A GNPVP I W K    +PS  + S  G  + +
Sbjct: 112 YPADIVVQFKD--VYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKI 169

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
             +     G+Y+C A N  G        + V
Sbjct: 170 FNIQLEDEGIYECEAENIRGK-DKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 63.4 bits (154), Expect = 2e-13
 Identities = 24/196 (12%), Positives = 49/196 (25%), Gaps = 59/196 (30%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP--SIIWSKKDSSLPSGE-----KSLE 59
           + P          + V++G  + L C    +     S  W   +  +          S  
Sbjct: 7   LDPFPPEERPE--VRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQT 64

Query: 60  GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK-------------ILPSGEK 106
             ++ +  V+    G Y C  ++           + ++               +      
Sbjct: 65  NGNLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVY 124

Query: 107 SLEGFSITLE------------------------------------KVDRHQAGVYQCTA 130
           +L G ++TLE                                     +     G+Y+C A
Sbjct: 125 ALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEA 184

Query: 131 TNGVGDPVTVDMTLEV 146
            N  G        + V
Sbjct: 185 ENIRGK-DKHQARIYV 199

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 84.5 bits (209), Expect = 3e-21
 Identities = 36/201 (17%), Positives = 65/201 (32%), Gaps = 64/201 (31%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL------EG 60
            PP    +P +   T   GG  +  C+A+G+P P I+W+KK   + +    +       G
Sbjct: 5   TPPRFTRTPVD--QTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSG 62

Query: 61  FSITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKS-----------L 108
             + ++ +   +   +Y+C A+N VG+ ++V   L VL +                    
Sbjct: 63  SVLRIQPLRTPRDEAIYECVASNNVGE-ISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121

Query: 109 EGFSITLE-------------------------------------------KVDRHQAGV 125
              + T+                                            + +    G 
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181

Query: 126 YQCTATNGVGDPVTVDMTLEV 146
           Y+C ATN  G   +    L V
Sbjct: 182 YECVATNSAGTRYSAPANLYV 202

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 78.7 bits (194), Expect = 4e-19
 Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 10/103 (9%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----- 56
           +Q+    P+I   P      V +  T T+ C ASGNP P I W K    + +        
Sbjct: 102 DQIPRGFPTIDMGPQL--KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK 159

Query: 57  ---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
              S    ++ +E+ +    G Y+C ATN  G   +    L V
Sbjct: 160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV 202

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 87.3 bits (216), Expect = 4e-21
 Identities = 36/184 (19%), Positives = 55/184 (29%), Gaps = 52/184 (28%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
           P     SPS      R G  ++L C A+ NP     W    +     +       + +  
Sbjct: 381 PDDPTISPSY--TYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ------ELFISN 432

Query: 68  VDRHQAGVYQCTATNGVGD--------------------------PVTVDMTLEVLCKI- 100
           +    +G+Y C A N                              PV     +   C+  
Sbjct: 433 ITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE 492

Query: 101 --------------LPSGEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 143
                         LP   +   S    ++TL  V R+ A  Y C   N V    +  +T
Sbjct: 493 AQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVT 552

Query: 144 LEVL 147
           L+VL
Sbjct: 553 LDVL 556

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 85.0 bits (210), Expect = 3e-20
 Identities = 31/183 (16%), Positives = 54/183 (29%), Gaps = 40/183 (21%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLE 59
           ++    P    S +N +  V     +   C+       + +W   + SLP   +   S  
Sbjct: 105 RVYPELPKPSISSNNSK-PVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRLQLSNG 162

Query: 60  GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL---------------------- 97
             ++TL  V R+    Y+C   N V    +  + L VL                      
Sbjct: 163 NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLN 222

Query: 98  --CKILPS----------GEKSLEGFSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTL 144
             C    +          G        + +  +  + +G Y C A N       T   T+
Sbjct: 223 LSCHAASNPPAQYSWFVNGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTI 282

Query: 145 EVL 147
            V 
Sbjct: 283 TVY 285

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 83.1 bits (205), Expect = 1e-19
 Identities = 33/176 (18%), Positives = 53/176 (30%), Gaps = 40/176 (22%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
            P    S +N +  V     +   C+       + +W     SLP   +   S    ++T
Sbjct: 466 LPKPSISSNNSK-PVEDKDAVAFTCEPEAQN-TTYLWWVNGQSLPVSPRLQLSNGNRTLT 523

Query: 65  LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK-----ILPSGEKSLEGFSITLE--- 116
           L  V R+ A  Y C   N V    +  +TL+VL       I P     L G ++ L    
Sbjct: 524 LFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHS 583

Query: 117 --------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
                                     K+  +  G Y C  +N         +   +
Sbjct: 584 ASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATG-RNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 79.2 bits (195), Expect = 3e-18
 Identities = 35/184 (19%), Positives = 57/184 (30%), Gaps = 52/184 (28%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
           P +   SP N   + R G  + L C A+ NP     W    +   S +       + +  
Sbjct: 203 PDAPTISPLN--TSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ------ELFIPN 254

Query: 68  VDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKI-------------------------- 100
           +  + +G Y C A N       T   T+ V  +                           
Sbjct: 255 ITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPE 314

Query: 101 --------------LPSGEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 143
                         LP   +   S +  ++TL  V R+  G Y+C   N +    +  + 
Sbjct: 315 IQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVI 374

Query: 144 LEVL 147
           L VL
Sbjct: 375 LNVL 378

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 65.4 bits (159), Expect = 2e-13
 Identities = 29/202 (14%), Positives = 52/202 (25%), Gaps = 68/202 (33%)

Query: 10  SIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG--------------- 54
           +I ++P N    V +G  + L        +    W K +    +                
Sbjct: 3   TIESTPFN----VAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPG 58

Query: 55  ------EKSLEGFSITLEKVDRHQAGVYQCTATNGVG----------------------- 85
                 E      S+ ++ + ++  G Y                                
Sbjct: 59  PAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSN 118

Query: 86  --DPVTVDMTLEVLCKI---------------LPSGEK---SLEGFSITLEKVDRHQAGV 125
              PV     +   C+                LP   +   S    ++TL  V R+    
Sbjct: 119 NSKPVEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTAS 178

Query: 126 YQCTATNGVGDPVTVDMTLEVL 147
           Y+C   N V    +  + L VL
Sbjct: 179 YKCETQNPVSARRSDSVILNVL 200

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 80.8 bits (200), Expect = 4e-21
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 6/78 (7%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
             I   P++    +  G T+ L+C A G+P+P   W K +  L    K        +  
Sbjct: 3  KLQICVEPTS--QKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK----LYMVPY 56

Query: 68 VDRHQAGVYQCTATNGVG 85
          VD    G Y C   N   
Sbjct: 57 VDLEHQGTYWCHVYNDRD 74

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 86.5 bits (214), Expect = 5e-21
 Identities = 32/180 (17%), Positives = 52/180 (28%), Gaps = 45/180 (25%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-------SLEG 60
           P +         L +    TI+L C A G P PS  W K        +            
Sbjct: 212 PRTPALVQKP--LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVS 269

Query: 61  FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----------------------- 97
            ++ ++      +G Y C   N VG   +V+  L V                        
Sbjct: 270 GTLIIKDAVVEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 328

Query: 98  CKI----------LPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
           C+           +  G+        + +E V +   G+YQC   N           L++
Sbjct: 329 CQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRES-AEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 80.0 bits (197), Expect = 1e-18
 Identities = 36/147 (24%), Positives = 55/147 (37%), Gaps = 24/147 (16%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD-----------SSLPSGE 55
             P     P+N ++         +ECKASGNP+P IIW + D                G+
Sbjct: 2   KGPVFLKEPTN-RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60

Query: 56  KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITL 115
                F     + + H A VY C A N  G  ++ D+ +              + +   +
Sbjct: 61  LVFPPFRAEDYRQEVH-AQVYACLARNQFGSIISRDVHVRA---------VVAQYYEADV 110

Query: 116 EK--VDRHQAGVYQCTATNGVGDPVTV 140
            K  V R  + V +C   + V D V V
Sbjct: 111 NKEHVIRGNSAVIKCLIPSFVADFVEV 137

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 74.6 bits (183), Expect = 8e-17
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 8/91 (8%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
             P S +  P     TV  G      C+ +GNP+ ++ W K   ++   E  L      +
Sbjct: 305 TAPLSAKIDPPT--QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL-----RI 357

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           E V +   G+YQC   N           L++
Sbjct: 358 ESVKKEDKGMYQCFVRNDRES-AEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 55.3 bits (133), Expect = 5e-10
 Identities = 19/145 (13%), Positives = 36/145 (24%), Gaps = 18/145 (12%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKA---SGNPVPSIIWSKKDSSLPSGEKSLEGFSI 63
           V        +     V +G +  ++C       + V  + W   +          +G  +
Sbjct: 102 VAQYYEADVNK--EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 159

Query: 64  TLE-------KVDRHQA-GVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKS--LEGFSI 113
            L        +V        YQC   + +     +  T   L    P    +        
Sbjct: 160 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQ 219

Query: 114 TLEKVDRHQAGVYQCTATNGVGDPV 138
              ++         C A    G P 
Sbjct: 220 KPLELMVAHTISLLCPAQ---GFPA 241

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 82.9 bits (205), Expect = 7e-21
 Identities = 27/189 (14%), Positives = 55/189 (29%), Gaps = 52/189 (27%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFSI 63
             + R   S      ++G    + C+ S +P P++ W   +  + +   +    L   ++
Sbjct: 2   MLTFREVVSP--QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNL 59

Query: 64  TLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEVLCKILPSGEKSL------EGFSITLE 116
            +  +++   G+Y+C       G+    D+ + V      S  +         G  +T  
Sbjct: 60  QILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFS 119

Query: 117 --------------------------------------KVDRHQAGVYQCTATNGVGDPV 138
                                                  +     G Y C ATN  G+  
Sbjct: 120 CRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE-D 178

Query: 139 TVDMTLEVL 147
                L+V 
Sbjct: 179 EKQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 81.0 bits (200), Expect = 4e-20
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 4/94 (4%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
           VPP+I     +   T  +G  +T  C+ASG+P P+I W +    +   EK         +
Sbjct: 95  VPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTEL 154

Query: 64  TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
           T+  +     G Y C ATN  G+       L+V 
Sbjct: 155 TVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVF 187

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 83.4 bits (206), Expect = 9e-21
 Identities = 43/200 (21%), Positives = 63/200 (31%), Gaps = 62/200 (31%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE-------- 59
            P I   P++  L V+K    TL CK  G P P+I W K    + + EK           
Sbjct: 9   SPRIIEHPTD--LVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA 66

Query: 60  -GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC-----KILPSGEKSLEGFSI 113
             F  T++       G Y C A N VG  V+   +L++       ++ P   +  +G + 
Sbjct: 67  LFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETA 126

Query: 114 TLE----------------------------------------------KVDRHQAGVYQ 127
            LE                                               V+    G Y+
Sbjct: 127 LLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNYK 186

Query: 128 CTATNGVGDPVTVDMTLEVL 147
           C A N VG   +    L V 
Sbjct: 187 CIAQNLVGTRESSYAKLIVQ 206

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 72.2 bits (177), Expect = 2e-16
 Identities = 28/106 (26%), Positives = 43/106 (40%), Gaps = 13/106 (12%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLEC-KASGNPVPSIIWSKKDSSLPSGEKS---- 57
           Q+ ++    R  P +    V KG T  LEC    G P P++IW K    L   +      
Sbjct: 103 QIAVLRDDFRVEPKD--TRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGA 160

Query: 58  ------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
                 ++G ++ +  V+    G Y+C A N VG   +    L V 
Sbjct: 161 SSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 80.1 bits (198), Expect = 9e-21
 Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 6/93 (6%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE---KSLEGFSIT 64
          PP I   P+N   T+   GT  L+CKA+G+P+P I W K+  + P  +      E  ++ 
Sbjct: 8  PPIILQGPAN--QTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQ 65

Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
          ++ +     G Y C AT+  G+  +    L+V 
Sbjct: 66 IKNLRISDTGTYTCVATSSSGE-TSWSAVLDVT 97

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 80.1 bits (198), Expect = 1e-20
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
          V P+I  +  N   T   G +I + C ASGNP P I+W K + +L             ++
Sbjct: 9  VAPTITGNLEN--QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL 66

Query: 64 TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          T+ +V +   G+Y C A + +G    V+    +
Sbjct: 67 TIRRVRKEDEGLYTCQACSVLGC-AKVEAFFII 98

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 83.3 bits (206), Expect = 2e-20
 Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 52/191 (27%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGF 61
           M    +  S S   + +  G +    C A G P  SI W           +      EG 
Sbjct: 2   MALLQVTISLSK--VELSVGESKFFTCTAIGEP-ESIDWYNPQGEKIISTQRVVVQKEGV 58

Query: 62  SITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK----ILPSGEKSLEGFSITL 115
              L     +   AG+Y+C AT+  G      + LE+  K     + S ++  +G    +
Sbjct: 59  RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 118

Query: 116 E---------------------------------------KVDRHQAGVYQCTATNGVGD 136
                                                    +++   G+Y+C        
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARG 178

Query: 137 PVTVDMTLEVL 147
            +     + ++
Sbjct: 179 EIDFRDIIVIV 189

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 82.9 bits (205), Expect = 4e-20
 Identities = 25/190 (13%), Positives = 57/190 (30%), Gaps = 52/190 (27%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFS 62
              + R   S      ++G    + C+ S +P P++ W   +  + +   +    L   +
Sbjct: 97  QKLTFREVVSP--QEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNN 154

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL------------------------- 97
           + +  +++   G+Y+C         +     + ++                         
Sbjct: 155 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTF 214

Query: 98  -CK----------------ILPSGEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
            C+                ++   EK         +T+  +     G Y C ATN  G+ 
Sbjct: 215 SCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE- 273

Query: 138 VTVDMTLEVL 147
                 L+V 
Sbjct: 274 DEKQAFLQVF 283

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 80.6 bits (199), Expect = 5e-20
 Identities = 24/192 (12%), Positives = 55/192 (28%), Gaps = 55/192 (28%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSGEKS--------L 58
              +   PS     +  G +    C+ +G+     I W   +    S  +          
Sbjct: 2   VLQVDIVPSQ--GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59

Query: 59  EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL----PSGEKSLEGFSIT 114
           +  ++T+   +   AG+Y+C  T   G      + +++  K++    P+ ++  EG    
Sbjct: 60  DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAV 119

Query: 115 LE---------------------------------------KVDRHQAGVYQCTATNGVG 135
           +                                         + +   G Y+C       
Sbjct: 120 IVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILAR 179

Query: 136 DPVTV-DMTLEV 146
             +   D+ + V
Sbjct: 180 GEINFKDIQVIV 191

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 76.8 bits (189), Expect = 2e-18
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 7/95 (7%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFS 62
                + +P+      ++G    + C    +  P+IIW  K   +   +      L    
Sbjct: 99  QKLMFKNAPTP--QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY 156

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTV-DMTLEV 96
           + +  + +   G Y+C         +   D+ + V
Sbjct: 157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 80.9 bits (200), Expect = 5e-20
 Identities = 39/192 (20%), Positives = 59/192 (30%), Gaps = 57/192 (29%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
            P IR    +  +T + G    L C+  G P+P I W +    L    K   S +G + T
Sbjct: 7   APGIRKEMKD--VTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64

Query: 65  L--EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK-------ILPSGEKSLEGFSITL 115
           L     ++   GVY C ATN VG+ V     L +           L        G ++ L
Sbjct: 65  LTVMTEEQEDEGVYTCIATNEVGE-VETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRL 123

Query: 116 E-KV--------------------DRHQ--------------------AGVYQCTATNGV 134
                                   +                       AG Y+   +N  
Sbjct: 124 HVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVF 183

Query: 135 GDPVTVDMTLEV 146
           G  V   + +E+
Sbjct: 184 GT-VDAILDVEI 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 70.1 bits (172), Expect = 6e-16
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 8/97 (8%)

Query: 7   VPPSIRTSPSNGQ-LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEG 60
             P         +      G T+ L     G PVP++ W      L + E      +   
Sbjct: 99  ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHY 158

Query: 61  FSITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEV 96
             + ++ V R   AG Y+   +N  G  V   + +E+
Sbjct: 159 THLVMKNVQRKTHAGKYKVQLSNVFGT-VDAILDVEI 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 80.5 bits (199), Expect = 6e-20
 Identities = 43/193 (22%), Positives = 59/193 (30%), Gaps = 58/193 (30%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK-----KDSSLPSGEKSLEGFS 62
            P+      +  + V +G T T E   SG PVP + W +       S+LP  + S     
Sbjct: 5   APTFTQPLQS--VVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGR 62

Query: 63  ITL--EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP-------SGEKSLEGFSI 113
             L    V +  +G Y   ATNG G   T    L V  +  P             +G  +
Sbjct: 63  AKLTIPAVTKANSGRYSLKATNGSGQ-ATSTAELLVKAETAPPNFVQRLQSMTVRQGSQV 121

Query: 114 TLE-KV--------------------DRHQ-------------------AGVYQCTATNG 133
            L+ +V                       Q                   +G Y   ATN 
Sbjct: 122 RLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS 181

Query: 134 VGDPVTVDMTLEV 146
           VG   T    L V
Sbjct: 182 VGR-ATSTAELLV 193

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 74.0 bits (182), Expect = 2e-17
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 8/99 (8%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLE 59
           + +  PP+      +  +TVR+G  + L+ + +G P P + + +  + + S      S E
Sbjct: 98  KAETAPPNFVQRLQS--MTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQE 155

Query: 60  GFSITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           G   +L   +     +G Y   ATN VG   T    L V
Sbjct: 156 GDLYSLLIAEAYPEDSGTYSVNATNSVGR-ATSTAELLV 193

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 79.9 bits (197), Expect = 1e-19
 Identities = 27/195 (13%), Positives = 52/195 (26%), Gaps = 59/195 (30%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKS--------- 57
                 +P N  +T  +G T TL C+       P + W +    L   + +         
Sbjct: 2   ESPFVGNPGN--ITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGED 59

Query: 58  -----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL--------------- 97
                +    + +  +     G YQC    G    V+    + +                
Sbjct: 60  EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVA 119

Query: 98  --------CKI-----------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 132
                   C+                  L +        S+ +  ++  +   + C A N
Sbjct: 120 ANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--KTSSFSCEAHN 177

Query: 133 GVGDPVTVDMTLEVL 147
             G   +   T+ VL
Sbjct: 178 AKGVTTSRTATITVL 192

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 76.5 bits (188), Expect = 2e-18
 Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 5/92 (5%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITL 65
             P     P +   TV       L C+A G P P  ++W +    L +        S+ +
Sbjct: 105 GLPYFLEEPED--RTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHV 162

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
             ++  +   + C A N  G   +   T+ VL
Sbjct: 163 PGLN--KTSSFSCEAHNAKGVTTSRTATITVL 192

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 77.4 bits (191), Expect = 1e-19
 Identities = 21/95 (22%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGF 61
           +   I T P +  +TV +G +    C   G PVP++ W +K   L +  +     +    
Sbjct: 13  LAARILTKPRS--MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70

Query: 62  SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           +  +  V     G Y     N  G     + TL +
Sbjct: 71  TFEISSVQASDEGNYSVVVENSEGK-QEAEFTLTI 104

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 83.1 bits (205), Expect = 1e-19
 Identities = 40/193 (20%), Positives = 66/193 (34%), Gaps = 52/193 (26%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
           +  PP IR +      T+  G ++ L+C A GNP P I W      + + ++   G  +T
Sbjct: 426 RFDPPVIRQAFQE--ETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483

Query: 65  LE----------KVDRHQAGVYQCTATNGVGD---------------------PVTVDMT 93
           +            V  +  G+Y+C A + VG                       +    T
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGET 543

Query: 94  LEVLCKI----------------LPSGEK--SLEGFSITLEKVDR-HQAGVYQCTATNGV 134
           L V C +                LP   K       ++ +E V+R      Y C A N  
Sbjct: 544 LIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQE 603

Query: 135 GDPVTVDMTLEVL 147
           G      + ++V+
Sbjct: 604 GYSARGSLEVQVM 616

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 82.3 bits (203), Expect = 2e-19
 Identities = 33/179 (18%), Positives = 47/179 (26%), Gaps = 50/179 (27%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----- 56
           E +    P + +       T     T+ L C A G PVP   W K        +      
Sbjct: 240 EPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLND 299

Query: 57  --SLEGFSITLEKVDRHQAGVYQCTATNGVG------------------DP----VTVDM 92
                  ++ ++      +G Y C   N VG                  DP    V    
Sbjct: 300 RVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGR 359

Query: 93  TLEVLC----------------KILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
                C                K +   E  L      +E V +   G+YQC   N   
Sbjct: 360 PAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL-----RIESVKKEDKGMYQCFVRNDRE 413

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 81.1 bits (200), Expect = 7e-19
 Identities = 37/190 (19%), Positives = 59/190 (31%), Gaps = 54/190 (28%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSIT 64
             P IR         +  G T+ + C  +G P+ SI+W + + +LP   K       ++ 
Sbjct: 526 GLPYIRQMEK---KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLI 582

Query: 65  LEKVDR-HQAGVYQCTATNGVGDPVTVDMTLEVL------------------------CK 99
           +E V+R      Y C A N  G      + ++V+                        C 
Sbjct: 583 IENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCS 642

Query: 100 ------------------ILPSGEKSL-----EGFSITLEKVDRHQAGVYQCTATNGVGD 136
                             I      +       G  +T+E V+   AG + C A N  G 
Sbjct: 643 VPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGH 702

Query: 137 PVTVDMTLEV 146
                  L V
Sbjct: 703 -QQFTTPLNV 711

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 80.0 bits (197), Expect = 1e-18
 Identities = 35/193 (18%), Positives = 55/193 (28%), Gaps = 61/193 (31%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
            P S +  P     TV  G      C+ +GNP+ ++ W K   ++   E  L      +E
Sbjct: 342 APLSAKIDPPT--QTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVL-----RIE 394

Query: 67  KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKI-------LPSGEKSLEGFSITLE--- 116
            V +   G+YQC   N           L++  +            E    G S+ L+   
Sbjct: 395 SVKKEDKGMYQCFVRNDRES-AEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVA 453

Query: 117 ------------------------------------------KVDRHQAGVYQCTATNGV 134
                                                      V  +  G+Y+C A + V
Sbjct: 454 GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKV 513

Query: 135 GDPVTVDMTLEVL 147
           G        L V 
Sbjct: 514 GV-AEHSAKLNVY 525

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 73.0 bits (179), Expect = 4e-16
 Identities = 35/149 (23%), Positives = 53/149 (35%), Gaps = 18/149 (12%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL----PSGEKS 57
                  P     P+N ++         +ECKASGNP+P IIW + D +     P   + 
Sbjct: 32  PDADQKGPVFLKEPTN-RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQI 90

Query: 58  LEGFSITLEKVDRH------QAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGF 111
                +               A VY C A N  G  ++ D+ +     +    E  +   
Sbjct: 91  SSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA--VVAQYYEADVNK- 147

Query: 112 SITLEKVDRHQAGVYQCTATNGVGDPVTV 140
               E V R  + V +C   + V D V V
Sbjct: 148 ----EHVIRGNSAVIKCLIPSFVADFVEV 172

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 72.7 bits (178), Expect = 6e-16
 Identities = 36/194 (18%), Positives = 63/194 (32%), Gaps = 54/194 (27%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEK------SL 58
           MV P I    +  +   + G  +TL C   G  +P +I W+    ++             
Sbjct: 616 MVLPRIIP-FAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGR 674

Query: 59  EGFSITLEKVDRHQAGVYQCTATNGVG-----------DP-----------VTVDMTLEV 96
            G  +T+E V+   AG + C A N  G            P                  +V
Sbjct: 675 RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKV 734

Query: 97  LCK------------------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 132
            CK                        +  S    +E  ++ ++ + +   G Y C A N
Sbjct: 735 ECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEAIN 794

Query: 133 GVGDPVTVDMTLEV 146
           G+G  ++  + + V
Sbjct: 795 GIGSGLSAVIMISV 808

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 55.7 bits (134), Expect = 4e-10
 Identities = 24/207 (11%), Positives = 44/207 (21%), Gaps = 70/207 (33%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKA---SGNPVPSIIWSKKDSSLPSGEKSLEG-FS 62
           V        +     V +G +  ++C       + V  + W   +          +G + 
Sbjct: 137 VAQYYEADVNK--EHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYL 194

Query: 63  ITLE------KVDR-HQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKS-------- 107
           +         +V        YQC   + +     +  T   L    P             
Sbjct: 195 VLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254

Query: 108 ------LEGFSITLE------------------------------------------KVD 119
                     ++ L                                              
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314

Query: 120 RHQAGVYQCTATNGVGDPVTVDMTLEV 146
              +G Y C   N VG   +V+  L V
Sbjct: 315 VEDSGKYLCVVNNSVGG-ESVETVLTV 340

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 77.0 bits (190), Expect = 2e-19
 Identities = 28/100 (28%), Positives = 42/100 (42%), Gaps = 9/100 (9%)

Query: 6  MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGF 61
          M PP     P N  +++ +G    ++ K SG P P + W     ++ S +       E  
Sbjct: 3  MGPPRFIQVPEN--MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKG 60

Query: 62 SITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
            +L    V    AG Y C A N  G+  T  + L+VL K
Sbjct: 61 LHSLIFEVVRASDAGAYACVAKNRAGE-ATFTVQLDVLAK 99

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 77.1 bits (190), Expect = 2e-19
 Identities = 31/93 (33%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE---KSLEGFSIT 64
          PP IR  P N   TV   GT  L C A+G+PVP+I+W K    + + +   K LE   + 
Sbjct: 8  PPVIRQGPVN--QTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQ 65

Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
          +        G Y C A+   G+  T    +EV 
Sbjct: 66 IRYAKLGDTGRYTCIASTPSGE-ATWSAYIEVQ 97

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 75.9 bits (187), Expect = 3e-19
 Identities = 22/91 (24%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
             +   P      V  GGT+TL C+    P P I W K    LP          + L +
Sbjct: 10 EVQLVVEPEG--GAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP----VLILPE 63

Query: 68 VDRHQAGVYQCTATNGVGDP-VTVDMTLEVL 97
          +     G Y C AT+    P  +  +++ ++
Sbjct: 64 IGPQDQGTYSCVATHSSHGPQESRAVSISII 94

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 75.6 bits (186), Expect = 5e-19
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
          P  +       Q +VR G  +T  C A S +P  +++W++  +             +T+ 
Sbjct: 9  PIMVTVEEQRSQ-SVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIR 67

Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           V    AG Y CT +N          TL V
Sbjct: 68 NVQPSDAGTYVCTGSNMFA-MDQGTATLHV 96

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 75.1 bits (185), Expect = 7e-19
 Identities = 23/93 (24%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 6  MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
           V PS  +   +    V +G    L+C   G PVP I W      +     + E     L
Sbjct: 9  EVAPSFSSVLKD--CAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAEL 66

Query: 66 E--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                    G Y C A N +G  V+    + V
Sbjct: 67 HIQDALPEDHGTYTCLAENALGQ-VSCSAWVTV 98

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 75.1 bits (185), Expect = 7e-19
 Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 8/95 (8%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGF 61
          + P I T+     + ++ G T  LE    G P P+  W+  DS      +          
Sbjct: 1  LKPKILTASRK--IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58

Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          SI      R  +G Y+    N +G+       + V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGE-DEAIFEVIV 92

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 80.5 bits (198), Expect = 8e-19
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 2/91 (2%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE-GFSITL 65
               I  + S+    + +        +    P     W+    S P  +K L+ G+SI+ 
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISK 382

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
               +HQ G Y   A N      T   TL +
Sbjct: 383 FCNHKHQPGEYIFHAENDDAQ-FTKMFTLNI 412

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 77.0 bits (189), Expect = 1e-17
 Identities = 28/182 (15%), Positives = 51/182 (28%), Gaps = 45/182 (24%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFS 62
              ++  + +   + V    +ITL+         S +W  K SSL              S
Sbjct: 48  SSGTVYEAAA---VEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVS 104

Query: 63  ITLEKVDRHQAGVYQCTATNGVGD-----PVTVDMTLEVL----------------CK-- 99
           + + K+   QAG Y     +   +      V++  TL                   C   
Sbjct: 105 MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISE 164

Query: 100 ---------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144
                               E+S        + +        +C A N +G   T   T+
Sbjct: 165 SVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTI 224

Query: 145 EV 146
           ++
Sbjct: 225 DL 226

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 69.7 bits (170), Expect = 6e-15
 Identities = 25/183 (13%), Positives = 41/183 (22%), Gaps = 53/183 (28%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
                          +      L C +   P P + W   DS   S ++         EK
Sbjct: 140 TLLYTLRRPY---FRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEK 196

Query: 68  V-DRHQAGVYQCTATNGVGDP---------------------VTVDMTLEVLCK------ 99
           V         +C A N +G                       + V   L + CK      
Sbjct: 197 VLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNH 256

Query: 100 ----------------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
                                    +    +      +  V R+  G Y C+++      
Sbjct: 257 GFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS 316

Query: 138 VTV 140
             V
Sbjct: 317 ALV 319

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 77.1 bits (190), Expect = 1e-18
 Identities = 38/197 (19%), Positives = 59/197 (29%), Gaps = 61/197 (30%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE------- 59
           + P  +    N  L VR     TL CK +G+P P + W ++   + +             
Sbjct: 3   MAPHFKEELRN--LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 60  GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL---------PSGEKSLEG 110
              + +  V    A VYQ  ATN  G  V+   +LEV                   +L G
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGS-VSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119

Query: 111 FSITLE-----------------------------------------KVDRHQAGVYQCT 129
             ++++                                          V+R  AG Y   
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179

Query: 130 ATNGVGDPVTVDMTLEV 146
           A N  G      + L+V
Sbjct: 180 AKNRFGI-DQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 69.4 bits (170), Expect = 1e-15
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEG 60
           ++  P          +   +G  ++++   SG P P I W K    + +           
Sbjct: 101 KIHLPKTLEGMGA--VHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS 158

Query: 61  FSITL--EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           F+  +    V+R  AG Y   A N  G      + L+V
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNRFGI-DQKTVELDV 195

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 74.3 bits (183), Expect = 3e-18
 Identities = 18/97 (18%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 6   MVPPSIRTSPSNGQ-LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE----G 60
             PP IR      Q    + G  + L     G P P ++W+K  + L +    +      
Sbjct: 19  AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFD 78

Query: 61  FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
               + +  R  +G Y+ +         T  + + V+
Sbjct: 79  TVFFVRQAARSDSGEYELSVQIENMK-DTATIRIRVV 114

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 79.4 bits (195), Expect = 3e-18
 Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 5/135 (3%)

Query: 7   VPPSIRTSPSNGQ-LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
             P +         +    G  + +  K  G P P I W K    L S      G  +T+
Sbjct: 326 EKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTI 385

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGV 125
            +V     G Y    TN +         + ++  + P   +  +     ++         
Sbjct: 386 MEVSERDTGNYTVILTNPISK-EKQSHVVSLVVYVPPQIGE--KSLISPVDSYQYGTTQT 442

Query: 126 YQCTATNGVGDPVTV 140
             CT    +  P  +
Sbjct: 443 LTCTVY-AIPPPHHI 456

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 75.6 bits (185), Expect = 5e-17
 Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 6/93 (6%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
           V P+I  +  N   T   G +I + C ASGNP P I+W K + +L             ++
Sbjct: 665 VAPTITGNLEN--QTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNL 722

Query: 64  TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           T+ +V +   G+Y C A + +G    V+    +
Sbjct: 723 TIRRVRKEDEGLYTCQACSVLGC-AKVEAFFII 754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 74.8 bits (183), Expect = 9e-17
 Identities = 34/196 (17%), Positives = 60/196 (30%), Gaps = 58/196 (29%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--------------KDSSLPS 53
              +  SPS+  + +  G  + L C A       I ++               +D    S
Sbjct: 223 IYDVVLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 281

Query: 54  GEKSLEGFSI-TLEKVDRHQAGVYQCTATNGVGD-------------------------P 87
           G +  +  S  T++ V R   G+Y C A++G+                            
Sbjct: 282 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVE 341

Query: 88  VTVDMTLEVLCKI----------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTAT 131
            TV   + +  K                 L S      G  +T+ +V     G Y    T
Sbjct: 342 ATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILT 401

Query: 132 NGVG-DPVTVDMTLEV 146
           N +  +  +  ++L V
Sbjct: 402 NPISKEKQSHVVSLVV 417

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 65.5 bits (159), Expect = 2e-13
 Identities = 25/210 (11%), Positives = 53/210 (25%), Gaps = 74/210 (35%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---------- 56
             P I   P    +   +  +++L C A  +   ++ W K                    
Sbjct: 549 RGPEITLQP---DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKN 605

Query: 57  ---------------SLEGFSITLEKVDRHQAGVYQCTATNGVGDP-------------- 87
                          + +   + L+       G Y C A +                   
Sbjct: 606 LDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERV 665

Query: 88  ------------VTVDMTLEVLC----------------KILPSGEK---SLEGFSITLE 116
                        ++  ++EV C                + L             ++T+ 
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIR 725

Query: 117 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
           +V +   G+Y C A + +G    V+    +
Sbjct: 726 RVRKEDEGLYTCQACSVLGC-AKVEAFFII 754

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 63.6 bits (154), Expect = 7e-13
 Identities = 26/184 (14%), Positives = 45/184 (24%), Gaps = 57/184 (30%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE----- 59
            +  P +        LT++   T+ + C   G      +W    S      +  E     
Sbjct: 28  SLDLPRLSIQKD--ILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGL 83

Query: 60  -GFSITLEKVDRHQAGVYQCTATNGVG-----------------------DPVTV----- 90
              ++T+ KV  +  G Y+C                                V +     
Sbjct: 84  FCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKN 143

Query: 91  -DMTLE----------VLCKILPSGEKSLEGFSI--------TLEKVDRHQAGVYQCTAT 131
             + +            LC   P      +G  I        T+       AG+  C A 
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAK 203

Query: 132 NGVG 135
               
Sbjct: 204 INDE 207

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 59.4 bits (143), Expect = 2e-11
 Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 62/200 (31%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS--LPSGEK--SLEGFSIT 64
            S+        +T  K  T+ + C  S + +   + ++      +P G +         T
Sbjct: 127 ASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFT 186

Query: 65  LEKVDRHQAGVYQCTATNGVGD--------------------------PVTVDMTLEVLC 98
           +       AG+  C A                                 ++V   L + C
Sbjct: 187 IPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNC 246

Query: 99  KI------------------------------LPSGEKSLEGFSI-TLEKVDRHQAGVYQ 127
                                             SG +  +  S  T++ V R   G+Y 
Sbjct: 247 TARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT 306

Query: 128 CTATNGVGDPVTVDMTLEVL 147
           C A++G+         + V 
Sbjct: 307 CAASSGLMT-KKNSTFVRVH 325

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 54.8 bits (131), Expect = 1e-09
 Identities = 26/142 (18%), Positives = 40/142 (28%), Gaps = 13/142 (9%)

Query: 6   MVPPSIRTSPSNGQL-TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
            VPP I        + + + G T TL C     P P  I            +  +  S+T
Sbjct: 418 YVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVT 477

Query: 65  LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAG 124
                     V      N +         +E                  TL     + + 
Sbjct: 478 NPYPCEEWRSVEDFQGGNKIEVNKNQFALIE-----------GKNKTVSTLVIQAANVSA 526

Query: 125 VYQCTATNGVGDPVTVDMTLEV 146
           +Y+C A N VG      ++  V
Sbjct: 527 LYKCEAVNKVGR-GERVISFHV 547

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 39/102 (38%)

Query: 73  AGVYQCTATNGVG-----------------DPVTVDM--TLEVLCK-------ILPSGEK 106
             ++ C  T                     D +T+    TL++ C+       + P+ + 
Sbjct: 9   VALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLDWLWPNNQS 68

Query: 107 SLE-------------GFSITLEKVDRHQAGVYQCTATNGVG 135
             E               ++T+ KV  +  G Y+C       
Sbjct: 69  GSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDL 110

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 75.2 bits (185), Expect = 3e-18
 Identities = 33/174 (18%), Positives = 56/174 (32%), Gaps = 41/174 (23%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSGEKSLEGFSITLE 66
           PP          + V +  ++TL C+ + +P   SI W    + +P+  +          
Sbjct: 2   PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPS-----YRF 56

Query: 67  KVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLE--------- 116
           K + + +G Y C        DPV + +  E L    P  E   EG +I L          
Sbjct: 57  KANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLE-FQEGETIMLRCHSWKDKPL 115

Query: 117 ------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
                                   + +   +G Y CT   G     +  +T+ V
Sbjct: 116 VKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 56.7 bits (137), Expect = 4e-11
 Identities = 16/91 (17%), Positives = 35/91 (38%), Gaps = 7/91 (7%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKSLEGFSITL 65
               +  +P       ++G TI L C +  + P+  + + +   S      S    + ++
Sbjct: 85  FEWLVLQTPHL---EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF---SHLDPTFSI 138

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
            + +   +G Y CT   G     +  +T+ V
Sbjct: 139 PQANHSHSGDYHCTGNIGYTLFSSKPVTITV 169

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 77.4 bits (190), Expect = 4e-18
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS-SLPSGEKSLEGFSIT 64
           +  P +      G  T  +    T  C+A GNP+P +   K  +  LP GE         
Sbjct: 181 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE--------- 231

Query: 65  LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
              V R   G Y C A +  G+ VT ++T+ VL
Sbjct: 232 SVTVTRDLEGTYLCRARSTQGE-VTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 63.2 bits (153), Expect = 6e-13
 Identities = 30/177 (16%), Positives = 50/177 (28%), Gaps = 46/177 (25%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
             P+     +     V +G  +T++C+A      ++         P  +       + L+
Sbjct: 97  SFPAPNVILTK--PEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQ-------LLLK 147

Query: 67  KVDRHQAGVYQCTATNGVGDPVTVD---MTLEVLCK------ILPSGEKSLEGFSITLE- 116
                    + C+AT  V   +        L VL          P      E    T   
Sbjct: 148 ATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMC 207

Query: 117 --------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
                                      V R   G Y C A +  G+ VT ++T+ VL
Sbjct: 208 QAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGE-VTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 47.7 bits (113), Expect = 2e-07
 Identities = 26/181 (14%), Positives = 42/181 (23%), Gaps = 46/181 (25%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGN---PVPSIIWSKKDSSLPS----GEKSLEG 60
           PP + +        +      T+ C   G        +  +  D  L      G  S   
Sbjct: 6   PPQLVSPR-----VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSA 60

Query: 61  FSITLEKVDRHQAGVYQCTATNGVGD--------------PVTVDMTLEVL--------C 98
            +      +        C    G                 P  +    EV         C
Sbjct: 61  KASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKC 120

Query: 99  KILPSGEKSLEGFSI---------TLEKVDRHQAGVYQCTATNGVGDPVTVD---MTLEV 146
           +  P  + +L G             L+         + C+AT  V   +        L V
Sbjct: 121 EAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV 180

Query: 147 L 147
           L
Sbjct: 181 L 181

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 75.4 bits (185), Expect = 4e-18
 Identities = 15/93 (16%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
           Q++   +  +       + +G ++TL  ++     PS+           G K+L     +
Sbjct: 95  QLLVFGLTANSDT---HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTL-----S 146

Query: 65  LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
           + +++   +G + CT        V   + + VL
Sbjct: 147 VSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVL 178

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 73.5 bits (180), Expect = 3e-17
 Identities = 22/174 (12%), Positives = 49/174 (28%), Gaps = 48/174 (27%)

Query: 21  TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---------------------- 58
             +KG T+ L C AS        W   +     G +                        
Sbjct: 6   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 65

Query: 59  EGFSITLEKVDRHQAGVYQCTATNGVGD--------------PVTVDMTLEVLCK----- 99
             F + ++ +    +  Y C   +   +               +    +L +  +     
Sbjct: 66  GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGS 125

Query: 100 ------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
                   P G+    G ++++ +++   +G + CT        V   + + VL
Sbjct: 126 SPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVL 178

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 73.1 bits (180), Expect = 4e-18
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 8/95 (8%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGF 61
            P I T   +   TV          KA+G P P+ IW+K   ++  G K        GF
Sbjct: 5  SKPVIVTGLQD--TTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62

Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           + + K D   +G+Y CT  N  G  V+    L +
Sbjct: 63 FLEIHKTDTSDSGLYTCTVKNSAGS-VSSSCKLTI 96

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 76.5 bits (188), Expect = 8e-18
 Identities = 30/182 (16%), Positives = 49/182 (26%), Gaps = 49/182 (26%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
            P I   PS  +L V  G T+TL C ++G    S+ W    S   + +    G ++T   
Sbjct: 4   APVI--EPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRN 57

Query: 68  VDRHQAGVYQCTATNGVG-----------DP------------VTVDMTLEVLC------ 98
                 G Y+CT                 DP            V       + C      
Sbjct: 58  ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA 117

Query: 99  ------------KILPSGEKSL--EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144
                       + +               + K     +  Y C       +  +  + L
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWL 177

Query: 145 EV 146
           +V
Sbjct: 178 KV 179

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 73.1 bits (179), Expect = 2e-16
 Identities = 25/104 (24%), Positives = 43/104 (41%), Gaps = 11/104 (10%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---- 57
            ++   PP I+  PS   L   +G    + C A+   V   +  K+  +      +    
Sbjct: 180 NRVHPEPPQIKLEPSK--LVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQ 237

Query: 58  ----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
                +  +++L  VD   AG+Y C A+N VG   T  M  +V+
Sbjct: 238 DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGT-RTATMNFQVV 280

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 70.4 bits (172), Expect = 2e-15
 Identities = 28/196 (14%), Positives = 50/196 (25%), Gaps = 57/196 (29%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKS---LEGFS 62
            P       +  ++TV +G    L C  +      S+   ++       +          
Sbjct: 87  DPAHSWNLLA-QEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRG 145

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL--------PSGEKSLEGFSIT 114
             + K     +  Y C       +  +  + L+V             PS    + G +  
Sbjct: 146 FIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQ 205

Query: 115 LE-------------------------------------------KVDRHQAGVYQCTAT 131
           +                                             VD   AG+Y C A+
Sbjct: 206 IVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVAS 265

Query: 132 NGVGDPVTVDMTLEVL 147
           N VG   T  M  +V+
Sbjct: 266 NDVGT-RTATMNFQVV 280

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 72.5 bits (178), Expect = 9e-18
 Identities = 21/98 (21%), Positives = 37/98 (37%), Gaps = 9/98 (9%)

Query: 8   PPSIRTSP--SNGQLTVRKGGTITLECKASGNPVPSIIWSK------KDSSLPSGEKSLE 59
            P    +         V    T+   C A GNP+P++ W K      ++  +   +   +
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 63

Query: 60  GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
            +S+ +E V     G Y C   N  G  +     L+V+
Sbjct: 64  HWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVV 100

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 76.2 bits (187), Expect = 1e-17
 Identities = 34/184 (18%), Positives = 54/184 (29%), Gaps = 49/184 (26%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
             P I   PS  +L V+ G T+TL C  +G    S+ W    S   +         ++  
Sbjct: 3   SIPVI--EPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSSILSTN 56

Query: 67  KVDRHQAGVYQCTATNGVG-----------DP------------VTVDMTLEVLC----- 98
                  G Y+CT                 DP            V  D    + C     
Sbjct: 57  NATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDP 116

Query: 99  -------------KILPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT 143
                        + L              T+ +    Q+  YQC+A  G    +++ + 
Sbjct: 117 VLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIR 176

Query: 144 LEVL 147
           L+V 
Sbjct: 177 LKVQ 180

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 68.8 bits (168), Expect = 6e-15
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 11/99 (11%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE------- 59
            PP++   P+   L   +G    + C AS   V   ++ + +++  +  +  +       
Sbjct: 185 GPPALTLVPAE--LVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQ 242

Query: 60  -GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
              ++ L++VD   AG Y C A+N  G   +  M   V+
Sbjct: 243 KVLTLNLDQVDFQHAGNYSCVASNVQGK-HSTSMFFRVV 280

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 68.5 bits (167), Expect = 8e-15
 Identities = 28/196 (14%), Positives = 50/196 (25%), Gaps = 57/196 (29%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSS-LPSGEK--SLEGFS 62
            P       +     V +     L C  +       +   +     L             
Sbjct: 87  DPARPWNVLAQEV-VVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHG 145

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL--------PSGEKSLEGFSIT 114
            T+ +    Q+  YQC+A  G    +++ + L+V   I         P+    + G +  
Sbjct: 146 FTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQ 205

Query: 115 LE-------------------------------------------KVDRHQAGVYQCTAT 131
           +                                            +VD   AG Y C A+
Sbjct: 206 IVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVAS 265

Query: 132 NGVGDPVTVDMTLEVL 147
           N  G   +  M   V+
Sbjct: 266 NVQGK-HSTSMFFRVV 280

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 74.2 bits (182), Expect = 1e-17
 Identities = 32/178 (17%), Positives = 53/178 (29%), Gaps = 45/178 (25%)

Query: 7   VP--PSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSGEKSLEGFSI 63
           VP  P +  +P      + KG  +TL C  +    V S  W    S       SL     
Sbjct: 1   VPQKPKVSLNPPW--NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSL----- 53

Query: 64  TLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLE------ 116
            +       +G Y+C        +PV +++  + L  +  S E  +EG  + L       
Sbjct: 54  NIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWL-LLQASAEVVMEGQPLFLRCHGWRN 112

Query: 117 ---------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
                                            +G Y CT      D  +  + + V+
Sbjct: 113 WDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKSLEGF 61
            L++    +    S     V +G  + L C    N  V  +I+ K   +L       E  
Sbjct: 80  YLEVFSDWLLLQASAE--VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY---WYENH 134

Query: 62  SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
           +I++       +G Y CT      D  +  + + V+
Sbjct: 135 NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI 170

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 72.0 bits (177), Expect = 1e-17
 Identities = 27/99 (27%), Positives = 41/99 (41%), Gaps = 9/99 (9%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE------KSLEG 60
             P    +P +  LTV++G    ++CK SG P P + W      +          +    
Sbjct: 8   FRPHFLQAPGD--LTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGV 65

Query: 61  FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
            S+ +E V    AG+Y C ATN  G   +  + L V  K
Sbjct: 66  HSLIIEPVTSRDAGIYTCIATNRAGQ-NSFSLELVVAAK 103

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 71.2 bits (175), Expect = 2e-17
 Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 9/96 (9%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGFS 62
           PP+ + S  +   +VR+G  + +  +  G P P + W +    +   ++      EG  
Sbjct: 4  APPTFKVSLMD--QSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGL 61

Query: 63 ITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
            L     +R  AG Y C A N  G     +  LEV
Sbjct: 62 CRLRILAAERGDAGFYTCKAVNEYGA-RQCEARLEV 96

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 74.8 bits (183), Expect = 6e-17
 Identities = 21/92 (22%), Positives = 37/92 (40%), Gaps = 3/92 (3%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEKSLEGFSITL 65
             P +     +G     +   + L CKA  NP  +   W+  + SLP G ++        
Sbjct: 230 YEPEVTIEGFDGN-WYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFK 288

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
             ++   AG Y C ATN +G   +  + + + 
Sbjct: 289 GPINYSLAGTYICEATNPIGTR-SGQVEVNIT 319

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 61.3 bits (148), Expect = 4e-12
 Identities = 26/194 (13%), Positives = 47/194 (24%), Gaps = 54/194 (27%)

Query: 6   MVPPSIRTSPSNGQLTVRK---GGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLE-- 59
           M  P+     +   L  +K      +   C ++ G P   + W  +       ++     
Sbjct: 128 MAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPN 187

Query: 60  -----GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----------------- 97
                     L            C     +       +TL V                  
Sbjct: 188 GTVTVISRYRLVPSREAHQQSLACIVNYHMD-RFKESLTLNVQYEPEVTIEGFDGNWYLQ 246

Query: 98  -------CKI-----------------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG 133
                  CK                  LP G ++          ++   AG Y C ATN 
Sbjct: 247 RMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPINYSLAGTYICEATNP 306

Query: 134 VGDPVTVDMTLEVL 147
           +G   +  + + + 
Sbjct: 307 IGTR-SGQVEVNIT 319

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 50.1 bits (119), Expect = 3e-08
 Identities = 23/163 (14%), Positives = 44/163 (26%), Gaps = 31/163 (19%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNP----VPSIIWSKKDSSLPS---- 53
           +Q+   P  +     +  +    G  + L C  +       +  + W K  +        
Sbjct: 8   QQMGRDPSQVVQVNDS--MYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAI 65

Query: 54  -------------------GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94
                                 S    +I L +++    GVY C             + L
Sbjct: 66  YNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNL 125

Query: 95  EVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
            V+    P+         +  +K    +  V  CT+ NG    
Sbjct: 126 TVM--AKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPS 166

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 69.7 bits (171), Expect = 9e-17
 Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLE 66
            S      +    V  G  + L C+   +   SI W +    L    +  + G  + ++
Sbjct: 3  SGSSGVEVES--FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQ 59

Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                +G+Y C  ++  G   T   ++ V
Sbjct: 60 DSVPADSGLYACVTSSPSGS-DTTYFSVNV 88

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 72.6 bits (178), Expect = 1e-16
 Identities = 34/209 (16%), Positives = 54/209 (25%), Gaps = 70/209 (33%)

Query: 7   VPPSIRTSP--SNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SL 58
             P    +         V    T+   C A GNP+P++ W K         +        
Sbjct: 14  RAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRN 73

Query: 59  EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK---------ILPSGEKSLE 109
           + +S+ +E V     G Y C   N  G  +     L+V+ +          LP+   ++ 
Sbjct: 74  QHWSLIMESVVPSDKGNYTCVVENEYGS-INHTYHLDVVERSRHRPILQAGLPANASTVV 132

Query: 110 GFSITLE---------------------------------------------------KV 118
           G  +                                                       V
Sbjct: 133 GGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNV 192

Query: 119 DRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
               AG Y C  +N +G        L VL
Sbjct: 193 TEADAGEYICKVSNYIGQ-ANQSAWLTVL 220

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 71.5 bits (175), Expect = 3e-16
 Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 19/113 (16%)

Query: 1   MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG 60
           +E+ +  P      P+N   +   GG +   CK   +  P I W K      S       
Sbjct: 111 VERSRHRPILQAGLPAN--ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGL 168

Query: 61  FSITLEKVDRHQ----------------AGVYQCTATNGVGDPVTVDMTLEVL 97
             + + K                     AG Y C  +N +G        L VL
Sbjct: 169 PYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQ-ANQSAWLTVL 220

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 73.4 bits (180), Expect = 1e-16
 Identities = 22/99 (22%), Positives = 39/99 (39%), Gaps = 9/99 (9%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE------KSL 58
           +     +   P    +T+++G  + L C   G+P P + W K + +L S +      ++ 
Sbjct: 219 KNRARVLGGLPDV--VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAG 276

Query: 59  EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
                T+  V    +G Y     N  G   T D T+ V 
Sbjct: 277 RTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVF 314

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 70.3 bits (172), Expect = 2e-15
 Identities = 27/198 (13%), Positives = 48/198 (24%), Gaps = 61/198 (30%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK-SLEGFSI 63
              P      S     V     + L+CK +       I+W K +  +   EK   +    
Sbjct: 5   FTGPHFVEYLSW---EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC 61

Query: 64  TLE--KVDRHQAGVYQCTATNGVG----------------------DPVTVDMTLEVLC- 98
           TL   +  +  AG+Y+    +  G                              L++   
Sbjct: 62  TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQST 121

Query: 99  --------------------------KILPSG--EKSLEGFSITLE--KVDRHQAGVYQC 128
                                      I  S   +  + G  I L+  +   +  G Y  
Sbjct: 122 AEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVM 181

Query: 129 TATNGVGDPVTVDMTLEV 146
              +G        + L  
Sbjct: 182 ELFDGKT-GHQKTVDLSG 198

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 54.9 bits (132), Expect = 6e-10
 Identities = 21/143 (14%), Positives = 39/143 (27%), Gaps = 6/143 (4%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SL 58
           E +  V   I  S ++ ++     G               + WS   S++   ++    +
Sbjct: 100 ELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGV 159

Query: 59  EGFSITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLE 116
            G  I L+  +   +  G Y     +G        + L          E      +   E
Sbjct: 160 TGEQIWLQINEPTPNDKGKYVMELFDGKT-GHQKTVDLSGQAYDEAYAEFQRLKQAAIAE 218

Query: 117 KVDRHQAGVYQCTATNGVGDPVT 139
           K      G      T   G  + 
Sbjct: 219 KNRARVLGGLPDVVTIQEGKALN 241

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 69.7 bits (171), Expect = 2e-16
 Identities = 21/103 (20%), Positives = 41/103 (39%), Gaps = 10/103 (9%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG------- 54
                  P     P +    V +G ++ LEC+ S  P P + W + +  +          
Sbjct: 9   SHEHKRAPMFIYKPQS--KKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLY 66

Query: 55  EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
           + +    ++ ++ V++  AG Y  +A N  G   T +  L+V 
Sbjct: 67  QDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGV-TTCNTRLDVT 108

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 71.8 bits (176), Expect = 2e-16
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SL 58
           +     +   P    +T+++G  + L C   G+P P + W K + +L   +       + 
Sbjct: 114 KNRARVLGGLPDV--VTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAG 171

Query: 59  EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
                T+  V    +G Y     N  G   T D T+ V 
Sbjct: 172 RTAYFTINGVSTADSGKYGLVVKNKYGS-ETSDFTVSVF 209

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 47.9 bits (114), Expect = 1e-07
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 6/68 (8%)

Query: 24 KGGTITLECK-ASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLE--KVDRHQAGVYQ 77
              I L            + WS   S++   ++    + G  I L+  +   +  G Y 
Sbjct: 16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 75

Query: 78 CTATNGVG 85
              +G  
Sbjct: 76 MELFDGKT 83

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 68.9 bits (169), Expect = 3e-16
 Identities = 23/100 (23%), Positives = 35/100 (35%), Gaps = 8/100 (8%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGFS 62
            P I   P +    VR G ++ L  K +G    +  W K    +   E      S  G  
Sbjct: 7   GPQIIQFPED--QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSK 64

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP 102
           +T+    +   G Y     N +G      + L V+ K  P
Sbjct: 65  LTILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVDKPDP 103

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 72.9 bits (179), Expect = 3e-16
 Identities = 38/196 (19%), Positives = 62/196 (31%), Gaps = 61/196 (31%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP--SGEKSLEG------ 60
           P I     N   T  + G +TL C A G P+P I W +         G+KSL+G      
Sbjct: 2   PHI-IQLKN--ETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG 58

Query: 61  ----FSITLEKVDRHQAGVYQCTATNGVG-----------DP-----------VTVDMTL 94
                S+ ++ V    +G Y C A + +G                              +
Sbjct: 59  QHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPI 118

Query: 95  EVLCK-----------------ILPSGEKSLEGFS------ITLEKVDRHQAGVYQCTAT 131
            + C                  +      +L+ +S      + +     +  G Y CTAT
Sbjct: 119 NISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTAT 178

Query: 132 NGVGDPVTVDMTLEVL 147
           N +G     +  L + 
Sbjct: 179 NHIGT-RFQEYILALA 193

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 72.1 bits (177), Expect = 7e-16
 Identities = 23/98 (23%), Positives = 36/98 (36%), Gaps = 10/98 (10%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----EKSLEGF 61
             P   ++ +       +G  I + C    NP  SI W +    LP+      +    G 
Sbjct: 99  YAPKFISNQTI--YYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR 156

Query: 62  SITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
            + LE      +  G Y CTATN +G     +  L + 
Sbjct: 157 KMILEIAPTSDNDFGRYNCTATNHIGT-RFQEYILALA 193

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 72.1 bits (177), Expect = 4e-16
 Identities = 40/197 (20%), Positives = 58/197 (29%), Gaps = 59/197 (29%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-PSGEK----SLEGF 61
           + P  +    N  L VR     TL CK +G+P P + W ++   +   G K      +G 
Sbjct: 3   MAPHFKEELRN--LNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG 60

Query: 62  SITLE--KVDRHQAGVYQCTATNGVG-----------DP----------------VTVDM 92
              L    V    A VYQ  ATN  G            P                     
Sbjct: 61  YHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGE 120

Query: 93  TLEVLCK-----------------ILPSGEKSL---EGFSITL--EKVDRHQAGVYQCTA 130
            + +                    I  +G   +     F+  +    V+R  AG Y   A
Sbjct: 121 VVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCA 180

Query: 131 TNGVGDPVTVDMTLEVL 147
            N  G      + L+V 
Sbjct: 181 KNRFGI-DQKTVELDVA 196

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 71.7 bits (175), Expect = 6e-16
 Identities = 24/191 (12%), Positives = 41/191 (21%), Gaps = 53/191 (27%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKSLEGFS-- 62
           +  P          + +         C +  G P   I W      +P+  +     S  
Sbjct: 115 LAKPQNTAEVQK--VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT 172

Query: 63  ------ITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL-----CKILPSGEKSLEG 110
                   L    +       C   +     P  + + L V                L  
Sbjct: 173 VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQ 232

Query: 111 FSITLE-----------------------------------KVDRHQAGVYQCTATNGVG 135
              TL                                     VD+       C  TN +G
Sbjct: 233 NEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALG 292

Query: 136 DPVTVDMTLEV 146
                ++T++V
Sbjct: 293 A-RQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 48.6 bits (115), Expect = 1e-07
 Identities = 22/214 (10%), Positives = 42/214 (19%), Gaps = 79/214 (36%)

Query: 11  IRTSPSNGQLTVRKGGTITLECKASGNPVP-----SIIWSKKDSSLP------------- 52
           +  +P+   +    G ++TL C      +       + W++   S               
Sbjct: 3   VVQAPTQ--VPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYS 60

Query: 53  ----------SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK--- 99
                          L   S+ +  +     G Y C          +VD+ L VL K   
Sbjct: 61  ESKRLEFVAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQN 120

Query: 100 -ILPSGEKSLEGFSITLE------------------------------------------ 116
                  +                                                    
Sbjct: 121 TAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWI 180

Query: 117 --KVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL 147
                +       C   +     P  + + L V 
Sbjct: 181 LVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVY 214

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 69.5 bits (170), Expect = 7e-16
 Identities = 26/180 (14%), Positives = 57/180 (31%), Gaps = 44/180 (24%)

Query: 3   QLQMVP-PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSII-WSKKDSSLPSGEKSLEG 60
           + + +P   +   P     +V +  ++TL+C+ + +P  +   W   +S + S   S   
Sbjct: 1   RTEDLPKAVVFLEPQW--YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSY-- 56

Query: 61  FSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLE--- 116
               ++    + +G Y+C        DPV +++ +  L  +        E   I L    
Sbjct: 57  ---FIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWL-LLQAPRWVFKEEDPIHLRCHS 112

Query: 117 ------------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
                                         K     +G Y C    G  +  +  + + +
Sbjct: 113 WKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI 172

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 69.7 bits (170), Expect = 8e-16
 Identities = 10/88 (11%), Positives = 21/88 (23%), Gaps = 11/88 (12%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSI--- 63
            P ++                +T+ C  +  P P + W   +   P+   +  G      
Sbjct: 103 KPLTLSVHSER--SQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKD 160

Query: 64  ------TLEKVDRHQAGVYQCTATNGVG 85
                     + +       C   N   
Sbjct: 161 GSLSVAVDLSLPKPWHLPVTCVGKNDKE 188

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 46.6 bits (110), Expect = 3e-07
 Identities = 16/173 (9%), Positives = 35/173 (20%), Gaps = 61/173 (35%)

Query: 11  IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDR 70
            +  P   Q+ +   G +  +      P        + ++          F + +   + 
Sbjct: 29  FKLGPGEEQVLI---GRMHHDVIFIEWPFRGFFDIHRSAN---------TFFLVVTAANI 76

Query: 71  HQAGVYQCTATNGVGDPVTVDMTLEVLCK----ILPSGEKSLEGFSITLE---------- 116
              G Y C    G    VT    L V+      +     +  +   +T+           
Sbjct: 77  SHDGNYLCRMKLGET-EVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPH 135

Query: 117 ----------------------------------KVDRHQAGVYQCTATNGVG 135
                                              + +       C   N   
Sbjct: 136 VQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 71.6 bits (175), Expect = 9e-16
 Identities = 39/196 (19%), Positives = 55/196 (28%), Gaps = 70/196 (35%)

Query: 20  LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQA 73
           L V    T+   C A+GNP PSI W K         +        + +S+ +E V     
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 192

Query: 74  GVYQCTATNGVGDPVTVDMTLEVLCK---------ILPSGEKSLEGFSITLE-------- 116
           G Y C   N  G  +    TL+VL +          LP+ + ++ G  +           
Sbjct: 193 GNYTCVVENKFGS-IRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQ 251

Query: 117 ---------------------------------------------KVDRHQAGVYQCTAT 131
                                                         V    AG Y C A 
Sbjct: 252 PHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAG 311

Query: 132 NGVGDPVTVDMTLEVL 147
           N +G        L VL
Sbjct: 312 NSIGF-SHHSAWLVVL 326

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 70.8 bits (173), Expect = 2e-15
 Identities = 15/92 (16%), Positives = 26/92 (28%), Gaps = 4/92 (4%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK-SLEGFSIT 64
          VP           L    G  + L C    G P+   +W K  + L   E+  +    + 
Sbjct: 7  VPGPEPGQQEQ--LVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQ 64

Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          +       +G Y C             + +  
Sbjct: 65 VLNASHEDSGAYSCRQRLTQRVLCHFSVRVTD 96

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 67.3 bits (164), Expect = 3e-14
 Identities = 26/115 (22%), Positives = 34/115 (29%), Gaps = 21/115 (18%)

Query: 1   MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS------- 53
           +E+    P      P+N   T   G  +   CK   +  P I W K      S       
Sbjct: 215 LERSPHRPILQAGLPAN--QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGT 272

Query: 54  -----------GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
                           E   ++L  V    AG Y C A N +G        L VL
Sbjct: 273 PYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGF-SHHSAWLVVL 326

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 67.1 bits (164), Expect = 9e-16
 Identities = 18/93 (19%), Positives = 34/93 (36%), Gaps = 5/93 (5%)

Query: 5  QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSI 63
          Q  P  +     +  L V  G  + L C+   +   SI W +    L    +  + G  +
Sbjct: 6  QAQPWGVPVEVES--LLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEV 62

Query: 64 TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           +       +G+Y C  ++  G   T   ++ V
Sbjct: 63 EVRDSIPADSGLYACVTSSPSGS-DTTYFSVNV 94

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 69.9 bits (171), Expect = 9e-16
 Identities = 20/100 (20%), Positives = 36/100 (36%), Gaps = 11/100 (11%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SL 58
            M  P ++  P    +   +G  + + C+    P  +I W +    LPS         + 
Sbjct: 16  HMYAPKLQ-GPVA--VYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNT 72

Query: 59  EGFSI-TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
              S   +     +  G Y CTA N +G   +++  L   
Sbjct: 73  PSASYLEVTPDSENDFGNYNCTAVNRIGQ-ESLEFILVQA 111

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 71.4 bits (174), Expect = 1e-15
 Identities = 21/173 (12%), Positives = 48/173 (27%), Gaps = 48/173 (27%)

Query: 21  TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----------------------SL 58
             +KG T+ L C AS        W   +     G +                        
Sbjct: 5   LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQ 64

Query: 59  EGFSITLEKVDRHQAGVYQCTATNGVGD--------------PVTVDMTLEVLCK----- 99
             F + ++ +    +  Y C   +   +               +    +L +  +     
Sbjct: 65  GNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGS 124

Query: 100 ------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
                   P G+    G ++++ +++   +G + CT        V   + + V
Sbjct: 125 SPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVV 176

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 71.0 bits (173), Expect = 2e-15
 Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 10/114 (8%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS 62
           ++Q++   +  +       + +G ++TL  ++     PS+           G K+L    
Sbjct: 92  EVQLLVFGLTANSDT---HLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTL---- 144

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC-KILPSGEKSLEGFSITL 115
            ++ +++   +G + CT        V   + + VL  +   S     EG  +  
Sbjct: 145 -SVSQLELQDSGTWTCTVLQNQK-KVEFKIDIVVLAFQKASSIVYKKEGEQVEF 196

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 20/159 (12%), Positives = 48/159 (30%), Gaps = 34/159 (21%)

Query: 21  TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---------FSITLEKVDRH 71
            +   G +  + + + +    I +  K+  +     + +            +TL +    
Sbjct: 206 KLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQ 265

Query: 72  QA--GVYQCTATNGVGD-------------PVTVDMTLEVLCKILPS--------GEKSL 108
            A  G          G               +  ++T EV     P          +++ 
Sbjct: 266 YAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAK 325

Query: 109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
                    V   +AG++QC  ++     V ++  ++VL
Sbjct: 326 VSKREKAVWVLNPEAGMWQCLLSD--SGQVLLESNIKVL 362

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 70.0 bits (171), Expect = 1e-15
 Identities = 26/137 (18%), Positives = 35/137 (25%), Gaps = 20/137 (14%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---- 57
           E+    P      P+N   T   G  +   CK   +  P I W K      S        
Sbjct: 108 ERSPHRPILQAGLPAN--QTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTP 165

Query: 58  -------------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSG 104
                             + L  V     G Y C ATN +G        L V        
Sbjct: 166 YVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGV-AEKAFWLSVHGPRAAEE 224

Query: 105 EKSLEGFSITLEKVDRH 121
           E      + ++     H
Sbjct: 225 ELVEADEAGSVHHHHHH 241

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 69.6 bits (170), Expect = 2e-15
 Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 7/84 (8%)

Query: 20  LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQA 73
           L V    T+   C A+GNP PSI W K         +        + +S+ +E V     
Sbjct: 25  LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDR 84

Query: 74  GVYQCTATNGVGDPVTVDMTLEVL 97
           G Y C   N  G  +    TL+VL
Sbjct: 85  GNYTCVVENKFGS-IRQTYTLDVL 107

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 71.6 bits (175), Expect = 1e-15
 Identities = 23/203 (11%), Positives = 52/203 (25%), Gaps = 66/203 (32%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGF---- 61
             P +  S ++    +R+G   T+ C            W +++S     EK         
Sbjct: 210 AVPVVSVSKAS--YLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDF 267

Query: 62  ------SITLEKVDRHQAGVYQCTATNGVGDP-------------------------VTV 90
                 ++T+     + +GV+ C A N  G                           V  
Sbjct: 268 NYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVND 327

Query: 91  DMTLEVLCKI---------------------------LPSGEKSLEGFSITLEKVDRHQA 123
              ++++ +                              +         + L ++   + 
Sbjct: 328 GENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEG 387

Query: 124 GVYQCTATNGVGDPVTVDMTLEV 146
           G Y    +N   +   +   + V
Sbjct: 388 GTYTFLVSNSDVN-AAIAFNVYV 409

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 70.9 bits (173), Expect = 2e-15
 Identities = 23/203 (11%), Positives = 46/203 (22%), Gaps = 64/203 (31%)

Query: 6   MVPPSIRTSPSNGQ-LTVRKGGTITLECKASGNPVPSII-WSKKDSSLPSGEKSLEGF-- 61
           +    I   P     + V  G  + L  +    P P    W   + +     +       
Sbjct: 308 VDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSEN 367

Query: 62  --------SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL---------------- 97
                    + L ++   + G Y    +N   +   +   + V                 
Sbjct: 368 ESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVN-AAIAFNVYVNTKPEILTYDRLVNGML 426

Query: 98  -CK------------------------ILPSGEKSLEGFSI---------TLEKVDRHQA 123
            C                         +LP   ++L              +++       
Sbjct: 427 QCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHN 486

Query: 124 GVYQCTATNGVGDPVTVDMTLEV 146
           G  +C A N VG   +       
Sbjct: 487 GTVECKAYNDVGK-TSAYFNFAF 508

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 59.3 bits (143), Expect = 2e-11
 Identities = 27/200 (13%), Positives = 45/200 (22%), Gaps = 63/200 (31%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS-SLPSGEK----SLEGF 61
            P  +     +  L  ++     + C  +   V +          LP   +       G 
Sbjct: 113 DPAKLFLVDRS--LYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGI 170

Query: 62  SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKIL--------PSGEKSLEGFSI 113
            I   K   H      C+        ++    L+V              +     EG   
Sbjct: 171 MIKSVKRAYH-RLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEF 229

Query: 114 TLE----------------------------------------------KVDRHQAGVYQ 127
           T+                                                   + +GV+ 
Sbjct: 230 TVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFM 289

Query: 128 CTATNGVGDPVTVDMTLEVL 147
           C A N  G    V  TLEV+
Sbjct: 290 CYANNTFGS-ANVTTTLEVV 308

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 43.5 bits (102), Expect = 6e-06
 Identities = 23/136 (16%), Positives = 34/136 (25%), Gaps = 59/136 (43%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
           +  PPSI    S   L VR G  I L C   G     + W+         +++ E     
Sbjct: 33  EPSPPSIHPGKS--DLIVRVGDEIRLLCTDPG----FVKWTF-----EILDETNENKQNE 81

Query: 65  LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAG 124
                                                              EK +    G
Sbjct: 82  W------------------------------------------------ITEKAEATNTG 93

Query: 125 VYQCTATNGVGDPVTV 140
            Y CT  +G+ + + V
Sbjct: 94  KYTCTNKHGLSNSIYV 109

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 68.0 bits (166), Expect = 2e-15
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 17/105 (16%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF 61
           E+   V P    +  +  + V +G     +CK  G P P ++W K D+ +         F
Sbjct: 35  EEKPHVKPYFTKTILD--MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRH----F 88

Query: 62  SITLEKVDRHQ----------AGVYQCTATNGVGDPVTVDMTLEV 96
            I  ++                  Y C A N +G+  T    L V
Sbjct: 89  QIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGE-ATCTAELLV 132

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 70.7 bits (172), Expect = 3e-15
 Identities = 27/93 (29%), Positives = 39/93 (41%), Gaps = 11/93 (11%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS-SLPSGEKSLEGFSIT 64
           +  P +      G  T  +    T  C+A GNP+P +   K  +  LP GE         
Sbjct: 366 LYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGE--------- 416

Query: 65  LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
              V R   G Y C A +  G+ VT ++T+ VL
Sbjct: 417 SVTVTRDLEGTYLCRARSTQGE-VTREVTVNVL 448

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 63.7 bits (154), Expect = 7e-13
 Identities = 29/177 (16%), Positives = 50/177 (28%), Gaps = 46/177 (25%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
             P+     +     V +G  +T++C+A      ++            +       + L+
Sbjct: 282 SFPAPNVILTKP--EVSEGTEVTVKCEAHPRAKVTLNGVP-------AQPLGPRAQLLLK 332

Query: 67  KVDRHQAGVYQCTATNGVGDPV---TVDMTLEVL------CKILPSGEKSLEGFSITLE- 116
                    + C+AT  V   +        L VL       +  P      E    T   
Sbjct: 333 ATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMC 392

Query: 117 --------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
                                      V R   G Y C A +  G+ VT ++T+ VL
Sbjct: 393 QAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGE-VTREVTVNVL 448

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 52.6 bits (125), Expect = 6e-09
 Identities = 23/112 (20%), Positives = 43/112 (38%), Gaps = 12/112 (10%)

Query: 11  IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS-ITLEKVD 69
              SPS   + + +GG++ + C  S +    +     ++ LP  E  L G +    E  +
Sbjct: 2   TSVSPSK--VILPRGGSVLVTCSTSCDQPMLLGI---ETPLPKKELLLPGNNRKVYELSN 56

Query: 70  RHQAGVYQCTATNGVGD-----PVTVDMTLEVLCKILPSGEKSLEGFSITLE 116
             +     C +    G       +TV  T E + ++ P       G ++TL 
Sbjct: 57  VQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERV-ELAPLPSWQPVGKNLTLR 107

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 47.2 bits (111), Expect = 4e-07
 Identities = 22/183 (12%), Positives = 37/183 (20%), Gaps = 38/183 (20%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN---PVPSIIWSKKDSSLPS----GE 55
           QLQ                +      T+ C   G        +  +  D  L      G 
Sbjct: 181 QLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGN 240

Query: 56  KSLEGFSITLEKVDRHQAGVYQCTATNGVGD----------------------PVTVDMT 93
            S    +      +        C    G                          V+    
Sbjct: 241 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTE 300

Query: 94  LEVLCKILPS---------GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144
           + V C+  P           +       + L+         + C+AT  V   +      
Sbjct: 301 VTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQT 360

Query: 145 EVL 147
             L
Sbjct: 361 REL 363

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 5/88 (5%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPS--IIWSKKDSSLPSGEKSLE 59
            L +     R   +        G  +TL C+  G  P  +  ++  + +  L       E
Sbjct: 79  FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGE 138

Query: 60  GFSITLE--KVDRHQAGVYQCTATNGVG 85
              +T        H    + C     + 
Sbjct: 139 PAEVTTTVLVRRDHHGANFSCRTELDLR 166

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 67.0 bits (163), Expect = 3e-15
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 20/96 (20%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL--------- 58
                 +P +       GG++ L C+A G+PVP I W  +          L         
Sbjct: 21  MAGFVQAPLS--QQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRV 78

Query: 59  ---------EGFSITLEKVDRHQAGVYQCTATNGVG 85
                       +I+++ +     G Y+C A+N   
Sbjct: 79  HIHATYHQHAASTISIDTLVEEDTGTYECRASNDPD 114

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 65.8 bits (161), Expect = 4e-15
 Identities = 19/96 (19%), Positives = 28/96 (29%), Gaps = 8/96 (8%)

Query: 6  MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFS 62
             P I     +    V  G            P   + W      L    K   +     
Sbjct: 6  DHAPRITLRMRS--HRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63

Query: 63 ITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          +TLE        +G Y+   TN  G+  +   TL+V
Sbjct: 64 LTLEILDCHTDDSGTYRAVCTNYKGE-ASDYATLDV 98

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 68.2 bits (166), Expect = 4e-15
 Identities = 21/96 (21%), Positives = 40/96 (41%), Gaps = 6/96 (6%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGF 61
                      +N   TV++  ++TL C +  +   +I W     SL   E+   S    
Sbjct: 107 HQPVTQPFLQVTN--TTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTLSQNNS 163

Query: 62  SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
            + ++ + R  AG YQC  +N V    +  + L+++
Sbjct: 164 ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 199

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 24/190 (12%), Positives = 46/190 (24%), Gaps = 63/190 (33%)

Query: 21  TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG---------------------EKSLE 59
            V +   + L        + +  W K +++                         E    
Sbjct: 10  QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYS 69

Query: 60  GFSITLEKVDRHQAGVYQCTATNGVGD----------------------PVTVDMTLEVL 97
             S+  + +     GVY    T+                            TV     V 
Sbjct: 70  NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVT 129

Query: 98  CKILPSGEK--------------------SLEGFSITLEKVDRHQAGVYQCTATNGVGDP 137
              L +                       S     + ++ + R  AG YQC  +N V   
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVR 189

Query: 138 VTVDMTLEVL 147
            +  + L+++
Sbjct: 190 RSNSIKLDII 199

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 68.0 bits (166), Expect = 5e-15
 Identities = 27/180 (15%), Positives = 55/180 (30%), Gaps = 44/180 (24%)

Query: 3   QLQMVP-PSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEG 60
           + + +P   +   P      V +  ++TL+C+ + +P   S  W   +S + S   S   
Sbjct: 1   RTEDLPKAVVFLEPQWY--RVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSY-- 56

Query: 61  FSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLE--- 116
               ++      +G Y+C        DPV +++ +  L  +        E   I L    
Sbjct: 57  ---FIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWL-LLQAPRWVFKEEDPIHLRCHS 112

Query: 117 ------------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
                                         K     +G Y C    G  +  +  + + +
Sbjct: 113 WKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI 172

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 69.7 bits (171), Expect = 6e-15
 Identities = 23/101 (22%), Positives = 38/101 (37%), Gaps = 7/101 (6%)

Query: 1   MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----- 55
                     IR   +  Q+ V +G T+   C+A G+P P+I+W      L S +     
Sbjct: 377 PNYFTCRRARIRDRKAQ-QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRL 435

Query: 56  KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                 ++ +        G Y C A N  G+  ++   L V
Sbjct: 436 TVFPDGTLEVRYAQVQDNGTYLCIAANAGGN-DSMPAHLHV 475

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 68.6 bits (167), Expect = 1e-14
 Identities = 24/189 (12%), Positives = 46/189 (24%), Gaps = 53/189 (28%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-PSGEKSLEGFSITLEK 67
           P+++    N   +V  G  + L C+  G  +    W   +     +  KS    S+ L  
Sbjct: 159 PTLKVQVPN--ASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTL 216

Query: 68  VD---RHQAGVYQCTATNGVG------------------DPVTVDMTLEVLCK------- 99
            +           C A N VG                            +          
Sbjct: 217 ANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAP 276

Query: 100 ---------------------ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV 138
                                + P+  +++    + L +      G Y   A N  G   
Sbjct: 277 SLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-A 335

Query: 139 TVDMTLEVL 147
           +  +    +
Sbjct: 336 SASIMAAFM 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 13/104 (12%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--------- 56
            V  ++    S    T  +     +     G P PS+ W    S L              
Sbjct: 242 SVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 301

Query: 57  ---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
              ++    + L +      G Y   A N  G   +  +    +
Sbjct: 302 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQ-ASASIMAAFM 344

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 66.5 bits (162), Expect = 3e-14
 Identities = 25/162 (15%), Positives = 45/162 (27%), Gaps = 43/162 (26%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEK 67
             I   P    ++V +  T+TL C+    P   S  W    ++  +   S       +  
Sbjct: 2   AVITLQPPW--VSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTPSY-----RITS 54

Query: 68  VDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLE---------- 116
              + +G Y+C        DP+ +++    L  +  S     EG  + L           
Sbjct: 55  ASVNDSGEYRCQRGLSGRSDPIQLEIHRGWL-LLQVSSRVFTEGEPLALRCHAWKDKLVY 113

Query: 117 -----------------------KVDRHQAGVYQCTATNGVG 135
                                  K +    G Y C+      
Sbjct: 114 NVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR 155

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 59.2 bits (143), Expect = 2e-11
 Identities = 29/187 (15%), Positives = 58/187 (31%), Gaps = 48/187 (25%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKSLEGF 61
           QL++    +    S+      +G  + L C A  +  V ++++ +   +      +    
Sbjct: 77  QLEIHRGWLLLQVSSR--VFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSN-L 133

Query: 62  SITLEKVDRHQAGVYQCTATNGVG------------------------DPVTVDMTLEVL 97
           +I   K +    G Y C+                               P+     + + 
Sbjct: 134 TIL--KTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLS 191

Query: 98  C--KILPS------------GEKSLEGFS----ITLEKVDRHQAGVYQCTATNGVGDPVT 139
           C  K+L              G K+L G +      +    R  +G+Y C A    G+ + 
Sbjct: 192 CETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDGNVLK 251

Query: 140 VDMTLEV 146
               LE+
Sbjct: 252 RSPELEL 258

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 63.1 bits (154), Expect = 4e-14
 Identities = 19/97 (19%), Positives = 28/97 (28%), Gaps = 9/97 (9%)

Query: 6  MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGF 61
          M  P I     +   TV +G       +  G P P   W K    +   ++      E  
Sbjct: 3  MEAPKIFERIQS--QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN 60

Query: 62 SITLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
             L    V    +      A N  G+  +    L V
Sbjct: 61 VCELVIRDVTGEDSASIMVKAINIAGE-TSSHAFLLV 96

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 65.5 bits (159), Expect = 5e-14
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 7/96 (7%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLP---SGEKSLEGF 61
           +V PS      +G  +   G    L+C+   G+      W K   S          +   
Sbjct: 119 LVKPSGTRCFVDG--SEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP 176

Query: 62  SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
            I+++      +G Y CT  N VG      + L+V+
Sbjct: 177 VISVKNASSEYSGTYSCTVQNRVGS-DQCMLRLDVV 211

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 52.8 bits (126), Expect = 2e-09
 Identities = 31/213 (14%), Positives = 52/213 (24%), Gaps = 78/213 (36%)

Query: 10  SIRTSPSNGQLTVRKGGTITLECKASGNPVP----SIIWSKKDSSLPSGEKSL------- 58
           SI T      +   KG T  L CK + +P       I W    S     ++ +       
Sbjct: 2   SITTPEQR--IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDK 59

Query: 59  ----------------------EGFSITLEKVDRHQAGVYQCTATNGVG----------- 85
                                    SI +  +     G YQC      G           
Sbjct: 60  IYDNYYPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVL 119

Query: 86  -----------DPVTVDMTLEVLCK--------------------ILPSGEKSLEGFSIT 114
                          +    ++ C+                    +       +    I+
Sbjct: 120 VKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVIS 179

Query: 115 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
           ++      +G Y CT  N VG      + L+V+
Sbjct: 180 VKNASSEYSGTYSCTVQNRVGS-DQCMLRLDVV 211

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 65.9 bits (160), Expect = 8e-14
 Identities = 28/203 (13%), Positives = 49/203 (24%), Gaps = 65/203 (32%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS-LPSGEK----SLEG 60
             P  +        L  ++     + C  +   V      + D   LP+          G
Sbjct: 89  RDPAKLFLVGLP--LFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAG 146

Query: 61  FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK--------ILPSGEKSLEGFS 112
            +I   K   H+    +C A        +   TL+V           +  +     +G +
Sbjct: 147 ITIKNVKRAYHR-LCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDT 205

Query: 113 ITL------------------------------------------------EKVDRHQAG 124
            T+                                                       +G
Sbjct: 206 FTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSG 265

Query: 125 VYQCTATNGVGDPVTVDMTLEVL 147
           V+ C A N  G    V  TL+V+
Sbjct: 266 VFMCYANNTFGS-ANVTTTLKVV 287

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 65.5 bits (159), Expect = 1e-13
 Identities = 38/183 (20%), Positives = 57/183 (31%), Gaps = 49/183 (26%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
           +  PPSI   P+  +L V  G T++L C         + W+ K     +     +     
Sbjct: 9   EPSPPSI--HPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTY--FNEMVENKKNEWI 60

Query: 65  LEKVDRHQAGVYQCTATNG--------VGDP-----------VTVDMTLEVLC------- 98
            EK +  + G Y C+ +NG        V DP              D    V C       
Sbjct: 61  QEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQV 120

Query: 99  ----------KILPSGEK----SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 144
                     K LP+          G +I   K   H+    +C A        +   TL
Sbjct: 121 SQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR-LCVRCAAQRDGTWLHSDKFTL 179

Query: 145 EVL 147
           +V 
Sbjct: 180 KVR 182

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 62.6 bits (152), Expect = 9e-14
 Identities = 27/110 (24%), Positives = 40/110 (36%), Gaps = 17/110 (15%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSG---------EK 56
            PP I ++ +        G    ++C     P P  I WS K++ L SG           
Sbjct: 13  GPPIISSTQTQ---HALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 69

Query: 57  SLEGFSITL--EKVDR-HQAGVYQCTATNGVGDPVTVDMTLEVLCKILPS 103
           + EG   TL    + R     +Y CTA N  G   T  + L+     +  
Sbjct: 70  TEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKEQGSEMSG 118

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 61.3 bits (149), Expect = 2e-13
 Identities = 15/101 (14%), Positives = 27/101 (26%), Gaps = 16/101 (15%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---------- 56
            P+I    S             +     GNP P++ W    + L   +           
Sbjct: 3  FAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 57 SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
          +     + L+       G Y   A N  G      ++   +
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFM 97

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 61.6 bits (150), Expect = 2e-13
 Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 10/96 (10%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG------EKSLEGF 61
            P       +    + +G  +T  C+ +GNP P I W K    +         ++ L+G 
Sbjct: 8   APFFEMKLKH--YKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65

Query: 62  -SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
            S+          G Y   A N  G  ++    L V
Sbjct: 66  CSLHTTASTLDDDGNYTIMAANPQGR-ISCTGRLMV 100

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 64.7 bits (157), Expect = 2e-13
 Identities = 20/106 (18%), Positives = 37/106 (34%), Gaps = 13/106 (12%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS 62
           +LQ+   ++  +       VR+G  ITL C   GN V +  W+          + +  F 
Sbjct: 176 RLQVSSINVSVNAVQ--TVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFL 233

Query: 63  I----------TLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL 97
           +           +   +   +G Y C  T  V        + + V+
Sbjct: 234 LDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVV 279

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 64.0 bits (155), Expect = 4e-13
 Identities = 24/178 (13%), Positives = 40/178 (22%), Gaps = 48/178 (26%)

Query: 14  SPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLE----GFSITLEKVD 69
           +P   +L +    T  L C  S      ++W +     P      +       +TL  + 
Sbjct: 4   TPPGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLT 59

Query: 70  RHQAGVYQCTATNGVGDPVTVDMTLEVLCK----------ILPSGEKSLEGFSITLE--- 116
               G Y CT  +  G        L +                      E   IT+    
Sbjct: 60  GLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRV 119

Query: 117 ---------------------------KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 147
                                           +   Y C  T G  +  +    +  L
Sbjct: 120 TDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRL 177

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 63.2 bits (153), Expect = 7e-13
 Identities = 20/192 (10%), Positives = 43/192 (22%), Gaps = 57/192 (29%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
              +        + + +   IT+ C+ +  P   +   +K   +            +   
Sbjct: 93  VGFLPNDAEELFIFLTEITEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSG-- 149

Query: 68  VDRHQAGVYQCTATNGVGDPVTVDMTLEVLC------KILPSGEKSLEGFSITL------ 115
               +   Y C  T G  +  +    +  L        +        +G +ITL      
Sbjct: 150 --IFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIG 207

Query: 116 ---------------------------------------EKVDRHQAGVYQCTATNGVG- 135
                                                     +   +G Y C  T  V  
Sbjct: 208 NEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVND 267

Query: 136 DPVTVDMTLEVL 147
                 + + V+
Sbjct: 268 HQDEKAINITVV 279

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 63.3 bits (153), Expect = 3e-13
 Identities = 25/112 (22%), Positives = 45/112 (40%), Gaps = 8/112 (7%)

Query: 11  IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE--KV 68
           I T+P + +   + G +++L C  +G   P   W  +  S  +G+ + EG + TL    V
Sbjct: 3   IETTPES-RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61

Query: 69  DRHQAGVYQCTATNGVGDPVTVDMTLEVLCK----ILPSGEKSLEGFSITLE 116
                  Y CTAT      +   + +E+        +        G  IT++
Sbjct: 62  SFGNEHSYLCTATCESR-KLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVK 112

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 41.7 bits (97), Expect = 2e-05
 Identities = 15/97 (15%), Positives = 27/97 (27%), Gaps = 13/97 (13%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN---PVPSIIWSKKDSSLPSGEKSLE 59
           Q+++               +  G  IT++C  +         I   K D  + S E   +
Sbjct: 85  QVEIYSFPKDPEIHLSG-PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLED 143

Query: 60  G---------FSITLEKVDRHQAGVYQCTATNGVGDP 87
                       +T   V      V  C A   + + 
Sbjct: 144 ADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM 180

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 63.4 bits (153), Expect = 4e-13
 Identities = 14/116 (12%), Positives = 30/116 (25%), Gaps = 29/116 (25%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---------- 57
                ++     + V +G  IT+ C  +     ++ W    +   + E            
Sbjct: 136 NNVHVSTAEV--VQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQ 193

Query: 58  ----------------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
                               ++ +       AG   C    G G  +  D +  +L
Sbjct: 194 FGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQG-ELDADRSSTIL 248

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 47.2 bits (111), Expect = 3e-07
 Identities = 24/130 (18%), Positives = 41/130 (31%), Gaps = 21/130 (16%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECK---ASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
            ++RT+ +   + V  GGT+ L C    A+    P I W K  S   S +     ++   
Sbjct: 3   MTVRTTHTE--VEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYN--- 57

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGV 125
                     +Q      V      +   + L +       +L   ++ L  V     G 
Sbjct: 58  ----------WQGEGLGFVESDSYKESFGDFLGRA---SVANLAAPTLRLTHVHPQDGGR 104

Query: 126 YQCTATNGVG 135
           Y C       
Sbjct: 105 YWCQVAQWSI 114

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 64.0 bits (155), Expect = 4e-13
 Identities = 21/103 (20%), Positives = 32/103 (31%), Gaps = 19/103 (18%)

Query: 1   MEQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG 60
           +E+ +   P I  SP+N  + V  G  I L C  +G       W    S +   +  L  
Sbjct: 201 LEENKPTRPVI-VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGE 259

Query: 61  FSITLEKVD------------------RHQAGVYQCTATNGVG 85
              ++E                     R     + C A N  G
Sbjct: 260 DYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 302

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 55.9 bits (134), Expect = 3e-10
 Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 15/145 (10%)

Query: 4   LQMVPPSIRTSPSNGQLTVRKGGTITLEC------KASGNPVPSIIWSKKDSSLPSGEKS 57
           ++  P     + +  +  +   G   L C      K   N +P + W K    L      
Sbjct: 97  VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH 156

Query: 58  LEGF--SITLEKVDRHQAGVYQCTATN---GVGDPVTVDMTLEVLCKILPSGEKSLEGFS 112
             G    + +  V     G Y C A+    G   P+T  +    L +  P+    +   +
Sbjct: 157 FSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPAN 216

Query: 113 ITLEKVDRHQAGVYQCTATNGVGDP 137
            T+E VD        C  T   G  
Sbjct: 217 ETME-VDLGSQIQLICNVT---GQL 237

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 51.3 bits (122), Expect = 1e-08
 Identities = 22/173 (12%), Positives = 36/173 (20%), Gaps = 58/173 (33%)

Query: 20  LTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQA 73
           L           C  + N    +I W K DS  P   +           +         +
Sbjct: 15  LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 74

Query: 74  GVYQCTATNGVGDPVTVDMTLEVL------------------------------------ 97
           G Y C   N     + + ++ + +                                    
Sbjct: 75  GHYYCVVRNSSYC-LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKN 133

Query: 98  -------------CKILPSGEKSLEGF--SITLEKVDRHQAGVYQCTATNGVG 135
                        CK L        G    + +  V     G Y C A+    
Sbjct: 134 ENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL 186

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 9e-13
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 11/101 (10%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF 61
              Q   P I  +P +  L + +G    L+C+    P+ S+ W   + ++ S        
Sbjct: 346 ASFQCSAPFIMDAPRD--LNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRI 401

Query: 62  SI----TLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           S+    TL    V     GVY C  TN  G+       L V
Sbjct: 402 SVLNDGTLNFSHVLLSDTGVYTCMVTNVAGN-SNASAYLNV 441

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 61.2 bits (148), Expect = 1e-12
 Identities = 19/98 (19%), Positives = 27/98 (27%), Gaps = 4/98 (4%)

Query: 21  TVRKGGTITLECKASGNPVP--SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQC 78
               G  I L C  + +        W K    L     +L G     +     Q G Y C
Sbjct: 9   VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKED--ALPGQKTEFKVDSDDQWGEYSC 66

Query: 79  TATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLE 116
                      + +      K + S E   EG +  L 
Sbjct: 67  VFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLV 104

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 55.8 bits (134), Expect = 1e-10
 Identities = 24/103 (23%), Positives = 37/103 (35%), Gaps = 16/103 (15%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSL--PSGEKSLEGFSI 63
            PP ++   S+    + +G T  L CK+   P V    W K   S        S   F +
Sbjct: 82  GPPRVKAVKSS--EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFV 139

Query: 64  ---------TLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEV 96
                     +E ++     G Y+C  T+  G      +TL V
Sbjct: 140 SSSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITLRV 181

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.5 bits (152), Expect = 2e-12
 Identities = 25/96 (26%), Positives = 41/96 (42%), Gaps = 10/96 (10%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSI---- 63
            P I   P++  L V +G    L+C+AS   + S+ W   + ++ +        ++    
Sbjct: 341 APVIVEPPAD--LNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDG 397

Query: 64  TLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
           TL    V     G+Y C  +N VG+  T   TL V 
Sbjct: 398 TLNFTNVTVQDTGMYTCMVSNSVGN-TTASATLNVT 432

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 61.4 bits (148), Expect = 3e-12
 Identities = 21/143 (14%), Positives = 45/143 (31%), Gaps = 9/143 (6%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTIT---LECKASGNPVPSIIWSKKDSSLPSGEKSL-EGFS 62
              S    P +          IT   ++     +  P+I W      + +    + EG +
Sbjct: 119 CFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMN 178

Query: 63  ITLEKVDRHQAGVYQCTAT---NGVGDPVTVDMTLEVLCKILPSGEKSLEG-FSITLEKV 118
           ++         G Y C  T   NG    +T  +T++V+     +    +       + + 
Sbjct: 179 LSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEK 238

Query: 119 DRHQAGVYQCTATNG-VGDPVTV 140
           +  +  +  CT     + D    
Sbjct: 239 EPGEELLIPCTVYFSFLMDSRNE 261

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 52.6 bits (125), Expect = 5e-09
 Identities = 26/201 (12%), Positives = 45/201 (22%), Gaps = 72/201 (35%)

Query: 19  QLTVRKGGTITLEC-----------KASGNPVPSIIWSKKDSSLPSGEK----------S 57
           Q+ V +     ++C             + +   ++IW          E           S
Sbjct: 16  QIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRIS 75

Query: 58  LEGFSITLEKVDRHQAGVYQCTATNGVGD--------------------------PVTVD 91
            E   +       +  G Y C   N                                   
Sbjct: 76  KEKDVLWFRPTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEY 135

Query: 92  MTLEVLC----------------------KILPSGEKSLEGFSITLEKVDRHQAGVYQCT 129
               + C                      KI        EG +++         G Y C 
Sbjct: 136 GIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCV 195

Query: 130 AT---NGVGDPVTVDMTLEVL 147
            T   NG    +T  +T++V+
Sbjct: 196 VTYPENGRTFHLTRTLTVKVV 216

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 48.3 bits (114), Expect = 1e-07
 Identities = 14/104 (13%), Positives = 26/104 (25%), Gaps = 20/104 (19%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKA----SGNPVPSIIWSKKDSSL------ 51
                VPP I +   +       G  + + C        +    + W+            
Sbjct: 218 SPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITID 277

Query: 52  ---------PSGEKSLEGFSITLEKVDR-HQAGVYQCTATNGVG 85
                       E       ++++KV        Y C A +  G
Sbjct: 278 VTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKG 321

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 57.7 bits (140), Expect = 4e-12
 Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 20 LTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEK---SLEGFSITLE--KVDRHQA 73
              +GG +   CK       + + W      L + EK   + E     L    + +   
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDD 70

Query: 74 GVYQCTATNGVGDPVTVDMTLEV 96
          G Y+C   N  G+  +    L V
Sbjct: 71 GTYRCKVVNDYGE-DSSYAELFV 92

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 61.2 bits (148), Expect = 4e-12
 Identities = 27/192 (14%), Positives = 49/192 (25%), Gaps = 66/192 (34%)

Query: 21  TVRKGGTITLECK-------ASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKV 68
              +G  + L C        AS +P  ++ W K DS+     +       +  ++ L   
Sbjct: 29  FRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPA 88

Query: 69  DRHQAGVYQCTATNGVGDPVTVDMTLEVL------------------------------- 97
            +  +G Y CT  N       + + L V                                
Sbjct: 89  LQEDSGTYVCTTRNASYC-DKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSE 147

Query: 98  ---------------CKILPSGEK----SLEGFSITLEKVDRHQAGVYQCTATNGVGD-- 136
                            +L    +          + +  V    AG Y+C  T       
Sbjct: 148 FTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQ 207

Query: 137 -PVTVDMTLEVL 147
             +T  + L + 
Sbjct: 208 YNITRSIELRIK 219

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 58.9 bits (142), Expect = 3e-11
 Identities = 19/143 (13%), Positives = 31/143 (21%), Gaps = 14/143 (9%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLEC-----KASGNPVPSIIWSKKDSSLPSGEK----S 57
                     +    +    +  L C              I W K    L    +     
Sbjct: 117 ENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSV 176

Query: 58  LEGFSITLEKVDRHQAGVYQCTATNGVGD---PVTVDMTLEVLCKILPSGEKSLEGFSIT 114
                + +  V    AG Y+C  T         +T  + L +  K   +    +      
Sbjct: 177 RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTI 236

Query: 115 LEKVDRHQAGVYQCTATNGVGDP 137
                        C    G G P
Sbjct: 237 --SASLGSRLTIPCKVFLGTGTP 257

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 52.0 bits (124), Expect = 6e-09
 Identities = 15/117 (12%), Positives = 41/117 (35%), Gaps = 25/117 (21%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKA---SGNPVPSIIWSKKDSSLP------ 52
           ++ +   P I +      ++   G  +T+ CK    +G P+ +++W   + +        
Sbjct: 220 KKKEETIPVIISPLKT--ISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPG 277

Query: 53  ------------SGEKSLEGFSITLEKVDRHQAGV-YQCTATNGVGDPVTVDMTLEV 96
                          ++     +  + V R    + ++C   N +    T+  T++ 
Sbjct: 278 GRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSF-QTLRTTVKE 333

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 61.0 bits (147), Expect = 5e-12
 Identities = 21/186 (11%), Positives = 46/186 (24%), Gaps = 53/186 (28%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPV---------PSIIWSKKDSSLP 52
           +  + + PS              G   + +C    + +           + W K   +  
Sbjct: 22  KDSKWLNPSCMF-GGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRR 80

Query: 53  SGEKSLEGFSITLEKVDRHQAG-VYQCTATNGVGDPVTVDMTLEVL-------------- 97
              + ++   + +     + +   Y CT T   GD V   +   +               
Sbjct: 81  PLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGT 140

Query: 98  ---------CK------------------ILPSGEK-SLEGFSITLEKVDRHQAGVYQCT 129
                    C                   ++  G K S  G ++ +   +   +G Y C 
Sbjct: 141 HDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCY 200

Query: 130 ATNGVG 135
                 
Sbjct: 201 VHYDDV 206

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 59.8 bits (144), Expect = 1e-11
 Identities = 22/137 (16%), Positives = 39/137 (28%), Gaps = 9/137 (6%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECK-ASGNPVPSIIWSKKDSSLPSGEK--SLEGFS 62
             PPS         L       I L C         +I W K +  L       S  G +
Sbjct: 126 RKPPSCIPETYE--LGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQN 183

Query: 63  ITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRH 121
           + +   +   +G Y C            + ++   +  ++PS +   +        V   
Sbjct: 184 LIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIG 243

Query: 122 QAGVYQCTATNGVGDPV 138
           +     CTA       +
Sbjct: 244 EPANITCTAV---STSL 257

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 17/111 (15%), Positives = 32/111 (28%), Gaps = 18/111 (16%)

Query: 3   QLQMVPPSIRTSP--SNGQLTVRKGGTITLECKASGNPVP----SIIWSKKDSSLPSGEK 56
            L ++P          + ++ V  G    + C A    +      I W      +   + 
Sbjct: 219 ILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDF 278

Query: 57  SLEGF----------SITLEKVDRHQAG-VYQCTATNGVGDPVTVDMTLEV 96
            +             ++  E V     G  Y C   N   D  T+  T+ +
Sbjct: 279 GVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFD-KTLTTTVVL 328

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 57.8 bits (139), Expect = 5e-12
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 17/103 (16%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNPVP--SIIWSKKDSSLP-------------S 53
           P I   P     +   G  ++  C A+ +     +  W   + +L               
Sbjct: 11  PQITVQPET--QSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQG 68

Query: 54  GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           GE       + L  V+    G YQC  +N  G   +V   L +
Sbjct: 69  GELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 59.2 bits (143), Expect = 8e-12
 Identities = 18/88 (20%), Positives = 33/88 (37%), Gaps = 7/88 (7%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEK-SLE 59
           E ++   P      S     V     + L+CK +     + I+W K +  +   EK   +
Sbjct: 111 EWIRKQGPHFVEYLSW---EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK 167

Query: 60  GFSITLE--KVDRHQAGVYQCTATNGVG 85
               TL   +  +  AG+Y+    +  G
Sbjct: 168 DGICTLLITEFSKKDAGIYEVILKDDRG 195

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 20/184 (10%), Positives = 45/184 (24%), Gaps = 68/184 (36%)

Query: 20  LTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRH 71
           + + + G +    +A   +    + +   +  +  G K       +     + +EK+   
Sbjct: 12  VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 71

Query: 72  QAGVYQCTATNGVG----------------------------------------DPVTVD 91
             G Y     +G                                            VT +
Sbjct: 72  DEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGE 131

Query: 92  MTLEVLCK------------------ILPSGEKSLEGFSITLE--KVDRHQAGVYQCTAT 131
             + + CK                  I    +   +    TL   +  +  AG+Y+    
Sbjct: 132 CNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILK 191

Query: 132 NGVG 135
           +  G
Sbjct: 192 DDRG 195

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 60.2 bits (145), Expect = 8e-12
 Identities = 18/142 (12%), Positives = 36/142 (25%), Gaps = 16/142 (11%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP----SIIWSKKDSSLPSGEKSLEGFS 62
           +  ++    +        G   TL    +G+       +  W+K D    +   +L    
Sbjct: 1   MAFTVSIQSNK--RCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNTATL---- 54

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQ 122
            T+       AG Y+ T  +             +    L       + F ++        
Sbjct: 55  -TVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS-----QT 108

Query: 123 AGVYQCTATNGVGDPVTVDMTL 144
                 T     G     +  L
Sbjct: 109 DVELHATVKFSGGKTPADNYEL 130

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 42.5 bits (99), Expect = 1e-05
 Identities = 19/141 (13%), Positives = 42/141 (29%), Gaps = 17/141 (12%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECK---ASGNPVPSII-----WSKKDSSLPSGEK 56
           +       T P +    V     + L      + G            WSK +  + + + 
Sbjct: 89  EAELIVNITEPQH--FYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDTTQ- 145

Query: 57  SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLE 116
                 IT+++    + GVY         D      + +++   +   +  +E  ++ L 
Sbjct: 146 -----DITIQEFTADKNGVYTVKVWGESED-SAASASTKIMLATMNVDQDVVESKTVALG 199

Query: 117 KVDRHQAGVYQCTATNGVGDP 137
                   V +    +  G P
Sbjct: 200 NEISLNYVVSEDIVGDSSGMP 220

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 57.4 bits (139), Expect = 9e-12
 Identities = 13/79 (16%), Positives = 26/79 (32%), Gaps = 8/79 (10%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGFSI 63
             I     +  + V++G + T  C+ S      + W    + L + E     +  G   
Sbjct: 13 RVHIIEDLED--VDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70

Query: 64 TL--EKVDRHQAGVYQCTA 80
           L   ++    +G     A
Sbjct: 71 VLTLRQLALKDSGTIYFEA 89

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.2 bits (136), Expect = 2e-11
 Identities = 18/83 (21%), Positives = 26/83 (31%), Gaps = 8/83 (9%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
          P +I     +    V  G  + L C+ S    P + W K   ++   +K     EG    
Sbjct: 8  PAAIIKPLED--QWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM 64

Query: 65 LE--KVDRHQAGVYQCTATNGVG 85
          L         AG Y C       
Sbjct: 65 LVIRGASLKDAGEYTCEVEASKS 87

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 56.4 bits (136), Expect = 2e-11
 Identities = 21/113 (18%), Positives = 34/113 (30%), Gaps = 15/113 (13%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---------S 57
            PP +  S    +L +       +E    GNP P++ W      L   +           
Sbjct: 7   YPPRV-VSLEEPELRL----EHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGE 61

Query: 58  LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEG 110
           +    +   K   +  G Y   A N +G      +    L +  P  E S   
Sbjct: 62  ISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEPFPVDEVSPTP 113

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 56.3 bits (135), Expect = 3e-11
 Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 17/103 (16%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWS--------------KKDSSLPSG 54
             +  SPS+  + +  G  + L C A       I ++               +D    SG
Sbjct: 8   YDVVLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSG 66

Query: 55  EKSLEGFSI-TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
            +  +  S  T++ V R   G+Y C A++G+         + V
Sbjct: 67  SEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRV 108

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 56.4 bits (135), Expect = 8e-11
 Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 1/78 (1%)

Query: 9  PSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
            ++  P    + V  G +  L C+ +  +   S+ W   D+SL + +       +T+  
Sbjct: 6  KPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRN 65

Query: 68 VDRHQAGVYQCTATNGVG 85
               AG   C  + G  
Sbjct: 66 ASLSAAGTRVCVGSCGGR 83

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 54.6 bits (131), Expect = 1e-10
 Identities = 25/103 (24%), Positives = 38/103 (36%), Gaps = 18/103 (17%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--------------KDSSLPSG 54
            S+        +TV +G T+TL+C  S     S+ W                K+S     
Sbjct: 2   GSLTNHTET--ITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLL 59

Query: 55  EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
             S    SIT+  V     GVY+C   +      T ++ + VL
Sbjct: 60  HHSANQLSITVPNVTLQDEGVYKCLHYS--DSVSTKEVKVIVL 100

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 57.3 bits (138), Expect = 1e-10
 Identities = 18/88 (20%), Positives = 32/88 (36%), Gaps = 7/88 (7%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEK-SLE 59
           E ++   P      S     V     + L+CK +       I+W K +  +   EK   +
Sbjct: 216 EWIRKQGPHFVEYLSW---EVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK 272

Query: 60  GFSITLE--KVDRHQAGVYQCTATNGVG 85
               TL   +  +  AG+Y+    +  G
Sbjct: 273 DGICTLLITEFSKKDAGIYEVILKDDRG 300

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 56.2 bits (135), Expect = 2e-10
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 8/105 (7%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
           + P  +    N  +      ++  EC     P     WSK   S     +     +G   
Sbjct: 2   IDPFTKEVVVN--VDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKT 58

Query: 64  TLE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEK 106
            +    +     G+Y C  T+  G   +  +  E L ++L    +
Sbjct: 59  KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHE 103

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 51.5 bits (123), Expect = 9e-09
 Identities = 22/197 (11%), Positives = 47/197 (23%), Gaps = 70/197 (35%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK-------SL 58
            P     S     + + + G +    +A   +    + +   +  +  G K       + 
Sbjct: 106 FPTVPVKSELA--VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNT 163

Query: 59  EGFSITLEKVDRHQAGVYQCTATNGVG--------------------------------- 85
               + +EK+     G Y     +G                                   
Sbjct: 164 GIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGP 223

Query: 86  -------DPVTVDMTLEVLCK------------------ILPSGEKSLEGFSITLE--KV 118
                    VT +  + + CK                  I    +   +    TL   + 
Sbjct: 224 HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEF 283

Query: 119 DRHQAGVYQCTATNGVG 135
            +  AG+Y+    +  G
Sbjct: 284 SKKDAGIYEVILKDDRG 300

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 55.7 bits (134), Expect = 1e-10
 Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 6/61 (9%)

Query: 25  GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
               TL C+      P +   +    L   ++      +   K     +  ++CTA N V
Sbjct: 115 CINTTLTCEVMNGTDPELNLYQDGKHLKLSQR------VITHKWTTSLSAKFKCTAGNKV 168

Query: 85  G 85
            
Sbjct: 169 S 169

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 49.9 bits (119), Expect = 2e-08
 Identities = 18/169 (10%), Positives = 46/169 (27%), Gaps = 45/169 (26%)

Query: 12  RTSPSNGQLTVRKGGTITLECK--ASGNPVPSIIWSKKDSSLPSGE-------------- 55
           +   +  +     G  I L+       + +  I W K        +              
Sbjct: 1   KEITNALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTY 60

Query: 56  KSLEGFSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEVL----------------- 97
           K  +  ++ ++ +      +Y+ +  +  G + +     L++                  
Sbjct: 61  KLFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTL 120

Query: 98  -CKI----------LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
            C++             G+       +   K     +  ++CTA N V 
Sbjct: 121 TCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNKVS 169

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 53.1 bits (128), Expect = 3e-10
 Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 8/80 (10%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
          P   + +  +  L V +GG  TL C  S    P + W   ++ L  G+K     EG  + 
Sbjct: 8  PVRFQEALKD--LEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE 64

Query: 65 L--EKVDRHQAGVYQCTATN 82
          L    +    +G Y C+  +
Sbjct: 65 LVVRNLRPQDSGRYSCSFGD 84

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 55.6 bits (133), Expect = 3e-10
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 5/87 (5%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPS--GEKSLEGFSI 63
            P+   +   G LT   G ++TL C         ++ W  +  +  S     +  G  +
Sbjct: 5  RCPAQEVAR--GVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRL 62

Query: 64 TLEKVDRHQAGVYQCTATNGVGDPVTV 90
           L  V  H +G Y C         V +
Sbjct: 63 LLRSVQLHDSGNYSCYRAGRPAGTVHL 89

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 52.4 bits (126), Expect = 5e-10
 Identities = 13/83 (15%), Positives = 25/83 (30%), Gaps = 8/83 (9%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGF--S 62
             +    ++  LTV+       +C+ S   V    W K    +   ++   S  G    
Sbjct: 8  QLEVLQDIAD--LTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHK 64

Query: 63 ITLEKVDRHQAGVYQCTATNGVG 85
          + ++ V     G Y         
Sbjct: 65 LVIDDVRPEDEGDYTFVPDGYAL 87

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 5e-10
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 13  TSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF----SITLEKV 68
           +           G T+T+ C      +  +  S  +  + S   +         +  +KV
Sbjct: 249 SEYKESAWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKV 308

Query: 69  DRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                GVY C A     +  T+ + L+V
Sbjct: 309 QVEDGGVYTCYAMGETFN-ETLSVELKV 335

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 54.4 bits (130), Expect = 6e-10
 Identities = 18/104 (17%), Positives = 33/104 (31%), Gaps = 17/104 (16%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNP--VPSIIWSKKDSSLPSGEKSLEGF---- 61
              +  SPS+  + +  G  + L C A           W    S     +          
Sbjct: 104 IYDVVLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS 162

Query: 62  ---------SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                    ++T++ V R   G+Y C A++G+         + V
Sbjct: 163 GSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT-KKNSTFVRV 205

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 51.2 bits (123), Expect = 1e-09
 Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 8/80 (10%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
                  +N  L V + GT    CK   +P  ++ W K    L +  K   S EG ++ 
Sbjct: 8  ANCFTEELTN--LQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLR 64

Query: 65 LE--KVDRHQAGVYQCTATN 82
          L    +++  +  Y C    
Sbjct: 65 LTISALEKADSDTYTCDIGQ 84

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 51.2 bits (123), Expect = 2e-09
 Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 9/80 (11%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
          P               +G T TL+C+ S   V  + W K   +L  G +     +G    
Sbjct: 8  PARFTQDLKT--KEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDGTRCE 63

Query: 65 LE--KVDRHQAGVYQCTATN 82
          L+   +    AG Y C    
Sbjct: 64 LQIHDLSVADAGEYSCMCGQ 83

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 51.5 bits (123), Expect = 2e-09
 Identities = 20/109 (18%), Positives = 35/109 (32%), Gaps = 20/109 (18%)

Query: 20  LTVRKGGTITLECKASGNPV---PSIIWSKKD------------SSLPSGEKSLEGFSIT 64
            TV+ G  IT   K     +   P+I W K                  + E+    ++  
Sbjct: 17  GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 76

Query: 65  LE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGF 111
           ++  K   + AG Y+C  T       +    LEV          +++  
Sbjct: 77  MQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEVHES--TGTTPNIDSG 122

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 9/110 (8%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-------EKSLE 59
           V            +         L C+A G P   +IW+  D  + SG       ++  +
Sbjct: 113 VNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEK 172

Query: 60  GFSITLE-KVDRHQAGVYQCTATNGVG-DPVTVDMTLEVLCKILPSGEKS 107
            F++T   +++     ++ CT       +  T ++ +  L    P  E++
Sbjct: 173 LFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPLAHPPNERT 222

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 50.4 bits (121), Expect = 2e-09
 Identities = 15/82 (18%), Positives = 21/82 (25%), Gaps = 8/82 (9%)

Query: 6  MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEG-- 60
          M    +        + V  G T   E + S  P     W  K   L +        +G  
Sbjct: 3  MALIEVEKPLYG--VEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKK 59

Query: 61 FSITLEKVDRHQAGVYQCTATN 82
            + L        G     A N
Sbjct: 60 HILILHNCQLGMTGEVSFQAAN 81

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 50.5 bits (121), Expect = 3e-09
 Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 8/84 (9%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
             I        + V +G + + EC  S  +     +W+    ++ S  +   + +G   
Sbjct: 8  HVGITKRLKT--MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKY 65

Query: 64 TLE--KVDRHQAGVYQCTATNGVG 85
           L   +     AG    +      
Sbjct: 66 ILVVREAAPSDAGEVVFSVRGLTS 89

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 53.1 bits (126), Expect = 4e-09
 Identities = 30/219 (13%), Positives = 50/219 (22%), Gaps = 77/219 (35%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--------- 55
             V        S   +    G ++ + C  +     SI +        +G          
Sbjct: 326 LFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEG 385

Query: 56  ---------------KSLEGFSITLEKVDRHQAGVYQCTATNG----------------- 83
                               F++ L ++    AG Y C                      
Sbjct: 386 WVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPN 445

Query: 84  ----------VGDPVTVDMTLEVL---------------CKILPSGEKSLEG-------- 110
                     +G+ + V                      C+ LPS ++            
Sbjct: 446 LKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDEN 505

Query: 111 ---FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
               S+TL  V R   G Y C    G     T  + + V
Sbjct: 506 SRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAV 544

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 50.4 bits (119), Expect = 3e-08
 Identities = 20/136 (14%), Positives = 38/136 (27%), Gaps = 21/136 (15%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVR------KGGTITLECKASGNPVPSIIWSKKDSSLPSGE 55
            Q+    P +      G +T                C+ S      ++ +      P+ E
Sbjct: 217 LQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276

Query: 56  --------KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-------CKI 100
                        FS+ +  + +  AG Y C A +         +    L          
Sbjct: 277 GRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR 336

Query: 101 LPSGEKSLEGFSITLE 116
            P+  K + G S+ + 
Sbjct: 337 SPTVVKGVAGSSVAVL 352

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 42.7 bits (99), Expect = 1e-05
 Identities = 23/148 (15%), Positives = 38/148 (25%), Gaps = 29/148 (19%)

Query: 19  QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---------------------- 56
             TV  G T+T+ C              K   L                           
Sbjct: 121 VYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGT 180

Query: 57  SLEGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVLCKILPSGEKSLEGFSITL 115
               FS+ + ++    AG Y C A +         D+ +      L   +      S+T 
Sbjct: 181 GQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYED---LRGSVTF 237

Query: 116 E---KVDRHQAGVYQCTATNGVGDPVTV 140
                 +      + C  ++G    V V
Sbjct: 238 HCALGPEVANVAKFLCRQSSGENCDVVV 265

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 41.1 bits (95), Expect = 5e-05
 Identities = 12/101 (11%), Positives = 30/101 (29%), Gaps = 26/101 (25%)

Query: 13  TSPSNGQLTVRKGGTITLECK---ASGNPVPSIIWSKKDSSL---------------PSG 54
             P    +   +G ++++ C     S N      W ++ +                  +G
Sbjct: 5   FGPEE--VNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAG 62

Query: 55  EKSLE------GFSITLEKVDRHQAGVYQCTATNGVGDPVT 89
             +L        F + + ++ +  +G Y+C           
Sbjct: 63  RANLTNFPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSF 103

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 50.0 bits (120), Expect = 4e-09
 Identities = 14/85 (16%), Positives = 23/85 (27%), Gaps = 12/85 (14%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSI---- 63
          P  I T   +    V  G  + +  + S      ++W K    L   +     +      
Sbjct: 8  PVLIVTPLED--QQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDG 64

Query: 64 -----TLEKVDRHQAGVYQCTATNG 83
                   V +   G YQ     G
Sbjct: 65 KRHILIFSDVVQEDRGRYQVITNGG 89

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 49.3 bits (118), Expect = 6e-09
 Identities = 15/80 (18%), Positives = 26/80 (32%), Gaps = 8/80 (10%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
            +    P +  + V  G     E +        + W +  S + +  K   + EG   T
Sbjct: 8  VSAFSKKPRS--VEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEGTRHT 64

Query: 65 LE--KVDRHQAGVYQCTATN 82
          L   +V     G Y   A +
Sbjct: 65 LTVREVGPADQGSYAVIAGS 84

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 49.7 bits (119), Expect = 6e-09
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 9/81 (11%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
          +P        N      +G T  L C+ S      + W K   +L  G++     +G   
Sbjct: 18 LPIKFTEGLRN--EEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARC 73

Query: 64 TLE--KVDRHQAGVYQCTATN 82
           L+   +    AG Y C    
Sbjct: 74 ELQIRGLVAEDAGEYLCMCGK 94

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 50.7 bits (121), Expect = 7e-09
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 6/61 (9%)

Query: 25  GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
               TL C+        +   +    L S  +       T+     +    ++C A N V
Sbjct: 110 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQK------TMSYQWTNLRAPFKCKAVNRV 163

Query: 85  G 85
            
Sbjct: 164 S 164

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 44.2 bits (104), Expect = 2e-06
 Identities = 18/155 (11%), Positives = 43/155 (27%), Gaps = 45/155 (29%)

Query: 25  GGTITLECK--ASGNPVPSIIWSKKDSSLPSGEKSLEGF------------SITLEKVDR 70
           G  I L        + +  + W +  + +   ++ ++ F             + ++ + R
Sbjct: 11  GHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTR 70

Query: 71  HQAGVYQCTATNGVGDPVTVDMTLEVLCKILPS--------------------------- 103
             +G Y  T  +  G    ++  L++    + S                           
Sbjct: 71  DDSGTYNVTVYSTNG-TRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKL 129

Query: 104 ---GEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
               E        T+     +    ++C A N V 
Sbjct: 130 YQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 164

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 49.3 bits (118), Expect = 7e-09
 Identities = 15/80 (18%), Positives = 25/80 (31%), Gaps = 6/80 (7%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
          P  I +      LT      + L C+ S    P   W K    +   E     ++G    
Sbjct: 8  PVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHR 66

Query: 65 LE--KVDRHQAGVYQCTATN 82
          L   +     +G ++C    
Sbjct: 67 LILPEAKVQDSGEFECRTEG 86

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 49.3 bits (118), Expect = 7e-09
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 9/81 (11%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEG--FS 62
             I T  ++   TV  G  I L+C+ S N      W+K    +   ++     +G    
Sbjct: 7  GLKILTPLTD--QTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQKGRIHK 62

Query: 63 ITLEKVDRHQAGVYQCTATNG 83
          + +        G Y       
Sbjct: 63 LVIANALTEDEGDYVFAPDAY 83

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 48.9 bits (117), Expect = 1e-08
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 8/83 (9%)

Query: 5  QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGF 61
          ++V    + +     +    G + TL C+ +      + W K    L S  K      G 
Sbjct: 8  KVVFAKEQPAHRE--VQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGC 64

Query: 62 SITL--EKVDRHQAGVYQCTATN 82
          +  L  ++  + +AG Y C A  
Sbjct: 65 TRRLVVQQAGQAEAGEYSCEAGG 87

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 48.6 bits (116), Expect = 1e-08
 Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 6/81 (7%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSI 63
          V   I        +   +   + L C+    P   + W+K    +          E    
Sbjct: 10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVR 68

Query: 64 TLE--KVDRHQAGVYQCTATN 82
           L    V    +G Y C   +
Sbjct: 69 RLVLPAVQLEDSGEYLCEIDD 89

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 21/162 (12%), Positives = 38/162 (23%), Gaps = 41/162 (25%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECK---ASGNPVPSIIWSKKDSSLP---------- 52
              P +  S     L V  G ++ + C         V  + W                  
Sbjct: 3   QGLPGLTVSSPQ--LRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYS 60

Query: 53  ---------------SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
                           G+      S+ L+ V +   G+Y C         V        +
Sbjct: 61  NLSVPTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWV 120

Query: 98  CKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVT 139
               P   +   G +  +           +C+  +     VT
Sbjct: 121 LPEEPRDLRVRVGDTTQM-----------RCSIQSTEEKRVT 151

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 44.5 bits (104), Expect = 3e-06
 Identities = 23/138 (16%), Positives = 39/138 (28%), Gaps = 25/138 (18%)

Query: 13  TSPSNGQLTVRKGGTITLECKASGNPVPSII---WSKKDSSLPSGEKSLEGFSITLEKVD 69
                  L VR G T  + C         +    W     S    E  L  +   +    
Sbjct: 121 LPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLS-YDSNMRSGK 179

Query: 70  RHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCT 129
               G ++                     ++  +G+ S    SI L+ V     G+Y C+
Sbjct: 180 FQSLGRFRN--------------------RVDLTGDISRNDGSIKLQTVKESDQGIYTCS 219

Query: 130 ATNGVGDPVTVDMTLEVL 147
              G  +     + L V+
Sbjct: 220 IYVGKLE-SRKTIVLHVV 236

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 50.3 bits (119), Expect = 2e-08
 Identities = 15/97 (15%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEG 60
                    + +  ++++  G T+ L C     P   I+W   D ++   E       + 
Sbjct: 109 DGNEEMGGITQTPYKVSIS-GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDE 165

Query: 61  FSITLEKVDR-HQAGVYQCTATNGVGDPVTVDMTLEV 96
             ++L++     Q+G Y C       +     + L  
Sbjct: 166 DHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA 202

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 48.0 bits (113), Expect = 1e-07
 Identities = 13/68 (19%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 23 RKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN 82
          ++ G++ L C        +I W K    +    +  +     L    +   G+YQC  + 
Sbjct: 16 QEDGSVLLTC---DAEAKNITWFKDGKMIGFLTE--DKKKWNLGSNAKDPRGMYQCKGSQ 70

Query: 83 GVGDPVTV 90
              P+ V
Sbjct: 71 NKSKPLQV 78

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 13/69 (18%), Positives = 19/69 (27%), Gaps = 12/69 (17%)

Query: 29 TLECKASGNPVPSIIWSKKDSSLPSGEK------------SLEGFSITLEKVDRHQAGVY 76
           +     G P PS+ W    S L                 ++    + L +      G Y
Sbjct: 19 CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY 78

Query: 77 QCTATNGVG 85
             A N  G
Sbjct: 79 TLLAANPFG 87

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 6/64 (9%)

Query: 22  VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTAT 81
             +    TL C+        +   +    L S  +       T+     +    ++C A 
Sbjct: 112 YWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQK------TMSYQWTNLRAPFKCKAV 165

Query: 82  NGVG 85
           N V 
Sbjct: 166 NRVS 169

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 21/161 (13%), Positives = 44/161 (27%), Gaps = 45/161 (27%)

Query: 20  LTVRKGGTITLECKAS-GNPVPSIIWSKKDSSL-----PSGEKSLEG------------- 60
           +    G  +TL            + W    +       P+G+K++               
Sbjct: 9   VNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTN 68

Query: 61  FSITLEKVDRHQAGVYQCTATNG----------VGDPVTVDM------TLEVLCKILPSG 104
            ++ +  V +   G Y     +           V + V+  M         + C++L   
Sbjct: 69  GALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGT 128

Query: 105 EKSL----------EGFSITLEKVDRHQAGVYQCTATNGVG 135
           +  L               T+     +    ++C A N V 
Sbjct: 129 DVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 169

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 49.7 bits (118), Expect = 3e-08
 Identities = 14/88 (15%), Positives = 33/88 (37%), Gaps = 9/88 (10%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG-- 60
            +++    +R         V   G + L C+A G P+  + W  ++ S+P+    +    
Sbjct: 98  TVKVKASYMRIDTRIL--EVPGTGEVQLTCQARGYPLAEVSW--QNVSVPANTSHIRTPE 153

Query: 61  --FSITLE-KVDRHQAGVYQCTATNGVG 85
             + +T   ++    +  + C   N   
Sbjct: 154 GLYQVTSVLRLKPQPSRNFSCMFWNAHM 181

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 46.2 bits (109), Expect = 4e-07
 Identities = 19/169 (11%), Positives = 42/169 (24%), Gaps = 54/169 (31%)

Query: 21  TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG--------------FSITLE 66
           TV  G +++LEC         +   +        + SL+                   + 
Sbjct: 13  TVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIP 72

Query: 67  KVDRHQAGVYQCTATNGVG---------------------DPVTVDMTLEVLCKI----- 100
            V    +G Y+C    G                         V     +++ C+      
Sbjct: 73  SVQVRDSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPL 132

Query: 101 ---------LPSGEKSLEG----FSITLE-KVDRHQAGVYQCTATNGVG 135
                    +P+    +      + +T   ++    +  + C   N   
Sbjct: 133 AEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHM 181

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 47.7 bits (113), Expect = 3e-08
 Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 18/94 (19%)

Query: 20  LTVRKGGTITLECKASGNPV---PSIIWSKKD------------SSLPSGEKSLEGFSIT 64
             V  GG+IT   + +G  +   P + W K                  S +++ + +   
Sbjct: 14  GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFE 73

Query: 65  LE--KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           L          G Y+C  +         +  L V
Sbjct: 74  LHITDAQPAFTGSYRCEVSTKDKF-DCSNFNLTV 106

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 50.2 bits (120), Expect = 4e-08
 Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 5/71 (7%)

Query: 20  LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLE--KVDRHQAG 74
             V +G +    C+   +  P + W K D  L    K      G    L   +V     G
Sbjct: 492 TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKG 551

Query: 75  VYQCTATNGVG 85
            Y   A N  G
Sbjct: 552 EYTVRAKNSYG 562

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 47.0 bits (112), Expect = 5e-08
 Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSIT 64
            +      +    V KGG +    + + +P   + W K    +    K     +G    
Sbjct: 6  SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRI 64

Query: 65 LE--KVDRHQAGVYQCTATN 82
          L            Y  TA +
Sbjct: 65 LFINNCQMTDDSEYYVTAGD 84

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 46.6 bits (111), Expect = 8e-08
 Identities = 17/83 (20%), Positives = 26/83 (31%), Gaps = 10/83 (12%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGFS 62
             +     +   T   G  + LEC+ S     ++ W K    +  G K      +EG  
Sbjct: 7  GIMVTKQLED--TTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63

Query: 63 ITLE--KVDRHQAGVYQCTATNG 83
            L      +  A  Y    T G
Sbjct: 64 HILIIEGATKADAAEYSVMTTGG 86

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 46.4 bits (110), Expect = 9e-08
 Identities = 23/104 (22%), Positives = 30/104 (28%), Gaps = 18/104 (17%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG------------- 54
                    N  +TV +GGT  L C+   N   S+ WS                      
Sbjct: 6   SQGQFPLTQN--VTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIEL 63

Query: 55  -EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
              S    SI++  V     G Y C+         T    L VL
Sbjct: 64  VRASWHELSISVSDVSLSDEGQYTCSLFT--MPVKTSKAYLTVL 105

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 47.3 bits (112), Expect = 2e-07
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 7/97 (7%)

Query: 4   LQMVPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKSLEGFS 62
             +         ++ QL       + L C     +   S  W    ++L S        +
Sbjct: 103 RILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNL----T 158

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
           ++           Y C A N V   ++  ++ + LC+
Sbjct: 159 VSW-DPRISSEQDYTCIAENAVS-NLSFSVSAQKLCE 193

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 45.1 bits (107), Expect = 3e-07
 Identities = 16/81 (19%), Positives = 24/81 (29%), Gaps = 8/81 (9%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-PSGEK---SLEGFSI 63
            + +         V KG  I L  + + +    + W K    +  SG K      G   
Sbjct: 15 STAFQKKLEPAY-QVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKR 72

Query: 64 TLE--KVDRHQAGVYQCTATN 82
          TL   +        YQC    
Sbjct: 73 TLTISQCSLADDAAYQCVVGG 93

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 10/61 (16%), Positives = 18/61 (29%), Gaps = 6/61 (9%)

Query: 25  GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
               TL C+        +   +    L S  +       T+     +    ++C A N V
Sbjct: 105 CSNATLTCEVLEGTDVELKLYQGKEHLRSLRQK------TMSYQWTNLRAPFKCKAVNRV 158

Query: 85  G 85
            
Sbjct: 159 S 159

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 41.8 bits (98), Expect = 1e-05
 Identities = 25/157 (15%), Positives = 44/157 (28%), Gaps = 41/157 (26%)

Query: 19  QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---------------LEGFSI 63
           Q+     G +T     S  P+  ++W K+   +   E S                   S+
Sbjct: 4   QIYGVVYGNVTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 64  TLEKVDRHQAGVYQCTATNGVG---------DPVTV--------DMTL--EVLCKILPS- 103
           T+  +       Y+  + N            + V+         + TL  EVL       
Sbjct: 63  TIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVEL 122

Query: 104 -----GEKSLEGFSITLEKVDRHQAGVYQCTATNGVG 135
                 E        T+     +    ++C A N V 
Sbjct: 123 KLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS 159

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 15/96 (15%), Positives = 26/96 (27%), Gaps = 17/96 (17%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG------F 61
           P I   P      V K   +T+ C+ +           + S                 F
Sbjct: 4  KPFIWAEPHFM---VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKF 59

Query: 62 SITLEKVDRHQAGVYQCTATNGVG-----DPVTVDM 92
           I    ++   AG Y C    G       + + + +
Sbjct: 60 YIP--DMNSRMAGQYSCIYRVGELWSEPSNLLDLVV 93

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 24/121 (19%), Positives = 40/121 (33%), Gaps = 19/121 (15%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---FSIT 64
            P +   PS     V +GG +TL C        + +  K+D               F+++
Sbjct: 24  KPFLSAWPSA---VVPRGGHVTLRCHYRH-RFNNFMLYKEDRIHIPIFHGRIFQESFNMS 79

Query: 65  LEKVDRHQAGVYQCTATNGVG--------DPVTVDMTLEVLCKILPSGEKSL--EGFSIT 114
              V    AG Y C  ++           +PV + +T       L +    L   G  + 
Sbjct: 80  --PVTTAHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVI 137

Query: 115 L 115
           L
Sbjct: 138 L 138

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 40.2 bits (94), Expect = 9e-05
 Identities = 24/124 (19%), Positives = 41/124 (33%), Gaps = 20/124 (16%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS----GEKSLEGFSI 63
            PS+   P      V+ G  + L+C +           K+  S       G+        
Sbjct: 119 KPSLLAHPGP---LVKSGERVILQCWSDIMFE-HFFLHKEGISKDPSRLVGQIHDGVSKA 174

Query: 64  --TLEKVDRHQAGVYQCTATNGVG--------DPVTVDMTLEVLCKILPS--GEKSLEGF 111
             ++  +    AG Y+C  +            DP+ + +T       L +  G K   G 
Sbjct: 175 NFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGE 234

Query: 112 SITL 115
           S+TL
Sbjct: 235 SVTL 238

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 42.9 bits (101), Expect = 7e-06
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 21/123 (17%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLEG------ 60
            P I    S     +   G++ ++C+A     +  ++  K  +    G +          
Sbjct: 9   MPFISAKSSPV---IPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE 65

Query: 61  FSITLEKVDRHQAGVYQCTATNGVG-----DPVTVDMTLEVLCK---ILPSGEKSLEGFS 112
           F I    +D ++AG YQC    G       D + + +T  +  K       G   + G +
Sbjct: 66  FVID--HMDANKAGRYQCQYRIGHYRFRYSDTLELVVT-GLYGKPFLSADRGLVLMPGEN 122

Query: 113 ITL 115
           I+L
Sbjct: 123 ISL 125

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 4/76 (5%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD-SSLPSGEKSLEGFSITLE 66
            P +          +  G  I+L C ++  P      +K+   SLP  +      + +L 
Sbjct: 106 KPFLSADRGL---VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLG 162

Query: 67  KVDRHQAGVYQCTATN 82
            VD + +G+Y+C    
Sbjct: 163 PVDLNVSGIYRCYGWY 178

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 42.1 bits (99), Expect = 1e-05
 Identities = 27/115 (23%), Positives = 39/115 (33%), Gaps = 16/115 (13%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
            PS++  PS+    V     +TL C+     V      K  SS    +       I    
Sbjct: 8   KPSLQALPSSL---VPLEKPVTLRCQGPP-GVDLYRLEKLSSSRYQDQAV---LFIP--A 58

Query: 68  VDRHQAGVYQCTATNGVG-----DPVTVDMTLEVLCKIL--PSGEKSLEGFSITL 115
           + R  AG Y+C+  NG       D + +  T       L    G     G  +TL
Sbjct: 59  MKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTL 113

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 20/97 (20%), Positives = 32/97 (32%), Gaps = 17/97 (17%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---FSIT 64
            PS+   P      V  GG +TL+C  +          K+    P           F I 
Sbjct: 94  KPSLSAQPGP---AVSSGGDVTLQC-QTRYGFDQFALYKEGDPAPYKNPERWYRASFPII 149

Query: 65  LEKVDRHQAGVYQCTATNGVG--------DPVTVDMT 93
              V    +G Y+C + +           DP+ + +T
Sbjct: 150 --TVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVVT 184

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 18/96 (18%), Positives = 37/96 (38%), Gaps = 17/96 (17%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG------F 61
            ++   P +    + +G ++T+ C+ +          K+ S  P   ++         F
Sbjct: 5  KATLWAEPGSV---ISRGNSVTIRCQGT-LEAQEYRLVKEGSPEPWDTQNPLEPKNKARF 60

Query: 62 SITLEKVDRHQAGVYQCTATNGVG-----DPVTVDM 92
          SI    +  H AG Y+C   +  G     DP+ + +
Sbjct: 61 SIP--SMTEHHAGRYRCYYYSPAGWSEPSDPLELVV 94

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 41.1 bits (96), Expect = 1e-05
 Identities = 24/99 (24%), Positives = 37/99 (37%), Gaps = 17/99 (17%)

Query: 16  SNGQLTVRKGGTITLECKASGNP--VPSIIWSKKDSSLP-----SGEKSLEGF------- 61
           + G ++  KGG+I L+C  S     V  + W ++D  L       G      F       
Sbjct: 9   TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPG 68

Query: 62  ---SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
               +TL+ +  +  G Y C          T  + LEVL
Sbjct: 69  PGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVL 107

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 42.8 bits (100), Expect = 1e-05
 Identities = 20/106 (18%), Positives = 33/106 (31%), Gaps = 12/106 (11%)

Query: 19  QLTVRKGGTITLECKASGNPVPSIIWSK----------KDSSLPSGEKSLEGFSITLEKV 68
            + V  G   T +C A G  V                 K+  + S  + +  F++     
Sbjct: 173 NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVV--NT 230

Query: 69  DRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSIT 114
            +  AG Y+C      G  ++    L V    +P     L     T
Sbjct: 231 TKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGAT 276

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 9/69 (13%), Positives = 24/69 (34%), Gaps = 4/69 (5%)

Query: 25  GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV 84
            G + +  K +  P+ + IW+       +  ++     + +     +   V     T+G 
Sbjct: 91  PGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRA----ELAISTFWPNFYQVIFEVITSGH 146

Query: 85  GDPVTVDMT 93
              + +D  
Sbjct: 147 QGYLAIDEV 155

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 40.5 bits (94), Expect = 2e-05
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFSITLEKVDR-HQAGVYQCT 79
          G T+ L C     P   I+W   D ++   E       +   ++L++     Q+G Y C 
Sbjct: 21 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCY 78

Query: 80 ATNGVGDPVTVDMTL 94
                +     + L
Sbjct: 79 PRGSKPEDANFYLYL 93

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 41.8 bits (97), Expect = 2e-05
 Identities = 15/70 (21%), Positives = 24/70 (34%), Gaps = 5/70 (7%)

Query: 21  TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTA 80
             R  G++ L C  +      I W K  S +     +    +  L    +   G YQC  
Sbjct: 118 GSRGDGSVLLTCGLTDKT---IKWLKDGSIISPLNAT--KNTWNLGNNAKDPRGTYQCQG 172

Query: 81  TNGVGDPVTV 90
                +P+ V
Sbjct: 173 AKETSNPLQV 182

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 20/96 (20%), Positives = 38/96 (39%), Gaps = 17/96 (17%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG------F 61
           P++   P +    +  G ++T+ C+ +          K++S  P   ++         F
Sbjct: 5  KPTLWAEPGSV---ISWGNSVTIWCQGT-LEAREYRLDKEESPAPWDRQNPLEPKNKARF 60

Query: 62 SITLEKVDRHQAGVYQCTATNGVG-----DPVTVDM 92
          SI    +    AG Y+C   + VG     DP+ + M
Sbjct: 61 SIP--SMTEDYAGRYRCYYRSPVGWSQPSDPLELVM 94

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus} Length = 105

 Score = 40.1 bits (94), Expect = 3e-05
 Identities = 22/79 (27%), Positives = 28/79 (35%), Gaps = 11/79 (13%)

Query: 5  QMVP-PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG--- 60
          Q +P PS+   PS     V  G T+TL C         +      +     EK  E    
Sbjct: 1  QQLPQPSLSLHPSQ---GVSLGDTVTLRCH-LPRMAAWVQLWLNGTLRFDKEKDKEQDAA 56

Query: 61 -FSITLEKVDRHQAGVYQC 78
           FS      +   AG YQC
Sbjct: 57 EFSFA--VTNLEDAGTYQC 73

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 13/90 (14%)

Query: 3  QLQMVP-PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG- 60
          Q Q +P P I   P      V K   +T+ C+ +           + S            
Sbjct: 1  QQQTLPKPFIWAEPHFM---VPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPER 56

Query: 61 -----FSITLEKVDRHQAGVYQCTATNGVG 85
               F I    ++   AG Y C    G  
Sbjct: 57 INKVKFYIP--DMNSRMAGQYSCIYRVGEL 84

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 37.6 bits (87), Expect = 5e-04
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 15/98 (15%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG---FSIT 64
            P++   P      V  G  +T  C          +  K+  S        +    F + 
Sbjct: 102 TPTLSVHPGP---EVISGEKVTFYC-RLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLG 157

Query: 65  LEKVDRHQAGVYQCTATNGVG------DPVTVDMTLEV 96
              V     G Y+C  +          +PV + +T ++
Sbjct: 158 --PVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDI 193

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 41.4 bits (96), Expect = 3e-05
 Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 12/112 (10%)

Query: 11  IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS-ITLEKVD 69
              SPS   + + +GG++ + C  S +    +     ++ LP  E  L G +    E  +
Sbjct: 2   TSVSPSK--VILPRGGSVLVTCSTSCDQPKLLGI---ETPLPKKELLLPGNNRKVYELSN 56

Query: 70  RHQAGVYQCTATNGVGDPVTVDMTLEVLC-----KILPSGEKSLEGFSITLE 116
             +     C +        T    L V       ++ P       G ++TL 
Sbjct: 57  VQEDSQPMCYSNCP-DGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLR 107

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 41.0 bits (96), Expect = 3e-05
 Identities = 18/123 (14%), Positives = 37/123 (30%), Gaps = 22/123 (17%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEG------F 61
            P++   P +    + +G  +TL C+            ++  + P   +  +       F
Sbjct: 5   KPTLWAEPGSV---ITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQF 60

Query: 62  SITLEKVDRHQAGVYQCTATNGVG------DPVTVDMTLEVLCK---ILPSGEKSLEGFS 112
            I    +     G Y+C   +         DP+   +      K             G +
Sbjct: 61  PIP--SITWEHTGRYRCYYGSDTAGRSESSDPLE-LVVTGAYIKPTLSAQPSPVVNSGGN 117

Query: 113 ITL 115
           +TL
Sbjct: 118 VTL 120

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 41.2 bits (95), Expect = 5e-05
 Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 4/88 (4%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--KSLEGFS 62
           +  P          ++++       L C        +  W  K++   S E         
Sbjct: 495 KECPNPKPDKAPLQKVSLAPNSRYYLSCPMESRH-ATYSWRHKENVEQSCEPGHQSPNCI 553

Query: 63  ITLEKVDRHQAGVYQCTAT-NGVGDPVT 89
           + +E +   Q G Y C A          
Sbjct: 554 LFIENLTAQQYGHYFCEAQEGSYFREAQ 581

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A Length = 106

 Score = 38.9 bits (91), Expect = 6e-05
 Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 24/102 (23%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKAS-----------GNPVPSIIWSKKDSSLPSGEK 56
            PSI   P      +  G  +T  C+                  +       +S    E 
Sbjct: 9   RPSISAEPGTV---IPLGSHVTFVCRGPVGVQTFRLERESRSTYNDTEDVSQASPSESEA 65

Query: 57  SLEGFSITLEKVDRHQAGVYQCTATNGVG-----DPVTVDMT 93
               F I    V    AG Y+C            D + + + 
Sbjct: 66  R---FRID--SVSEGNAGPYRCIYYKPPKWSEQSDYLELLVK 102

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 40.2 bits (93), Expect = 7e-05
 Identities = 23/153 (15%), Positives = 36/153 (23%), Gaps = 38/153 (24%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKD----------------- 48
           VPP +          V +G ++ L+C  +G      + W   D                 
Sbjct: 6   VPPLV---------EVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSE 56

Query: 49  --------SSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKI 100
                          +      + L +        Y C    G          L V  K 
Sbjct: 57  LQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAK- 115

Query: 101 LPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG 133
            P   +            D  Q  +  C + NG
Sbjct: 116 -PEATEVSPNKGTLSVMEDSAQE-IATCNSRNG 146

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 39.4 bits (91), Expect = 9e-05
 Identities = 20/107 (18%), Positives = 32/107 (29%), Gaps = 16/107 (14%)

Query: 5   QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS----------- 53
            +      + P     TV  GGT+ L+C+   +   S+ WS                   
Sbjct: 33  DINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNR 92

Query: 54  ---GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
                 +    SI++  V     G Y C+         T    + VL
Sbjct: 93  IQLVTSTPHELSISISNVALADEGEYTCSIFT--MPVRTAKSLVTVL 137

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 14/116 (12%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIW--SKKDSSLPSGEKSLEGFSITL 65
           P      P      V +GG++ L C  +           S + +    G + L   +  L
Sbjct: 2   PFWADLQPRV--AFVERGGSLWLNCSTNCPRPERGGLETSLRRNGTQRGLRWL---ARQL 56

Query: 66  EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC-----KILPSGEKSLEGFSITLE 116
             + R       C         +     +         +++P       G + TL 
Sbjct: 57  VDI-REPETQPVCFFRCA-RRTLQARGLIRTFQRPDRVELMPLPPWQPVGENFTLS 110

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 12/101 (11%)

Query: 6  MVPPSIRTSPSNGQLTVRKGGTITLEC-------KASGNPVPSIIWSKKDSSLPSGEKS- 57
          ++ P    SP +    V+     T  C                I+W     ++P  + + 
Sbjct: 1  LLDPCGYISPES--PVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTI 58

Query: 58 --LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                S+T   +      +     T G  +     +T+  
Sbjct: 59 INRTASSVTFTDIASLNIQLTCNILTFGQLEQNVYGITIIS 99

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 38.3 bits (88), Expect = 3e-04
 Identities = 15/95 (15%), Positives = 22/95 (23%), Gaps = 6/95 (6%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKAS----GNPVPSIIWSKKDSSLPSGEKSLEGFS 62
           V   I     +    +  G    L C         P  +  W+    S    E +     
Sbjct: 120 VTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTRSS-E 178

Query: 63  ITLEKVDRHQAGVYQCTATN-GVGDPVTVDMTLEV 96
           +TL            C     G        + L V
Sbjct: 179 LTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 192

 Score = 37.8 bits (87), Expect = 4e-04
 Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 11/111 (9%)

Query: 11  IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDR 70
           +   P    L V   G++ + C  + N          ++SL       +         + 
Sbjct: 5   VHVRPKK--LAVEPKGSLEVNCSTTCNQPEVGGL---ETSLNKILLDEQAQWKHYLVSNI 59

Query: 71  HQAGVYQCTATNGVGDPVTVDMTLEVL-----CKILPSGEKSLEGFSITLE 116
               V QC  T   G   +++  + V        +         G S T+E
Sbjct: 60  SHDTVLQCHFTCS-GKQESMNSNVSVYQPPRQVILTLQPTLVAVGKSFTIE 109

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 37.7 bits (87), Expect = 4e-04
 Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 8/89 (8%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEG- 60
           ++ +   +   +PS     +       + C  SG  P P + W +    L +   ++   
Sbjct: 99  EVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQD 158

Query: 61  -----FSITLE-KVDRHQAGVYQCTATNG 83
                ++++ +   +      + C    G
Sbjct: 159 PETELYAVSSKLDFNMTTNHSFMCLIKYG 187

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 37.8 bits (86), Expect = 7e-04
 Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 5/76 (6%)

Query: 26  GTITLECKASGNPVPSIIWSKKDSSLPSGEKS---LEGFSITLEKVDRHQAGVYQCTAT- 81
           GT  L+C    N    + W  ++  L +       +   ++ +  +    +GVYQC +  
Sbjct: 549 GTAELKCSQKSNL-ARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEE 607

Query: 82  NGVGDPVTVDMTLEVL 97
                 V   +   VL
Sbjct: 608 RVKNKTVFQVVAKHVL 623

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 19/92 (20%), Positives = 37/92 (40%), Gaps = 8/92 (8%)

Query: 2   EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSK-KDSSLPSGEKSLE 59
           + L  +  +   S  +  +   K G I LEC+++G  P P I WS  K  ++P+ E  + 
Sbjct: 110 KALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVV 169

Query: 60  G-----FSITLE-KVDRHQAGVYQCTATNGVG 85
                 +++     +         CT  + + 
Sbjct: 170 ADGVGLYAVAASVIMRGSSGEGVSCTIRSSLL 201

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.87
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.87
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.86
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.86
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.86
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.86
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.86
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.86
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.85
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.85
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.84
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.84
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.84
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.84
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.84
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.84
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.83
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.83
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.83
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.83
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.83
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.82
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.82
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.82
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.81
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.81
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.81
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.81
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.81
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.81
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.81
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.8
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.8
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.8
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.8
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.8
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.8
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.8
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.8
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.8
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.79
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.79
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.79
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.79
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.79
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.79
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.79
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.78
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.78
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.78
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.78
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.78
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.78
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.77
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.77
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.77
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.77
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.77
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.76
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.76
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.76
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.76
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.76
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.76
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.76
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.75
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.75
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.74
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.74
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.74
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.74
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.74
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.74
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.74
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.74
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.74
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.74
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.73
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.73
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.73
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.73
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.73
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.73
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.72
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.72
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.72
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.72
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.72
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.72
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.72
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.72
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.71
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.71
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.71
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.7
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.7
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.7
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.7
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.7
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.7
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.69
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.69
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.69
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.69
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.69
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.68
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.68
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.68
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.68
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.68
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.68
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.67
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.67
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.67
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.67
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.66
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.66
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.65
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.65
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.65
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.65
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.65
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.64
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.64
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.64
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.63
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.63
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.63
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.62
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.62
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.62
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.62
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.61
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.61
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.61
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.6
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.6
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.6
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.6
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.59
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.59
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.59
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.59
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.58
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.58
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.58
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.58
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.57
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.57
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.57
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.57
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.57
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.57
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.57
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.57
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.56
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.56
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.56
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.56
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.56
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.55
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.55
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.55
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.55
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.55
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.54
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.54
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.54
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.54
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.54
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.54
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.53
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.53
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.53
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.53
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.53
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.53
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.53
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.53
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.52
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.52
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.52
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.52
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.51
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.51
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.51
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.51
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.51
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.5
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.5
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.5
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.5
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.5
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.49
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.49
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.49
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.49
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.49
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.48
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.48
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.47
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.47
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.47
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.47
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.46
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.46
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.46
2ens_A	96	Advanced glycosylation END product-specific recept	99.46
1he7_A	126	High affinity nerve growth factor receptor; transf	99.46
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.45
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.45
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.45
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.45
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.45
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.44
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.44
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.44
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.44
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.44
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.44
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.43
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.43
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.43
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.43
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.42
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.42
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.42
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.42
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.42
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.42
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.41
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.41
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.41
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.41
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.4
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.4
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.38
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.38
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.38
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.37
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.36
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.36
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.36
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.36
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.36
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.36
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.35
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.35
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.34
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.34
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.34
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.33
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.32
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.32
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.32
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.31
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.31
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.31
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.3
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.3
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.3
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.29
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.29
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.29
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.29
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.29
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.28
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.28
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.28
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.28
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.27
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.27
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.27
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.27
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.27
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.27
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.26
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.26
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.26
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.25
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.25
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.25
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.24
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.24
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.23
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.22
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.22
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.22
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.21
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.21
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.21
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.2
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.2
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.2
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.2
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.2
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.2
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.2
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.2
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.19
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.19
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.19
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.19
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.19
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.19
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.19
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.19
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.19
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.18
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.18
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.16
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.15
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.15
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.15
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.14
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.14
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.14
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.13
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.12
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.12
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.12
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.1
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.1
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.09
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.09
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.08
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.07
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.07
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.06
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.06
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.06
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.05
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.05
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.05
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.05
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.04
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.04
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.04
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.03
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.03
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.03
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.02
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.02
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.02
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.02
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.02
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.02
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.02
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.01
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.01
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.01
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.01
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.0
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.0
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.0
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.0
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.0
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	98.98
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	98.98
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.97
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.97
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.94
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.94
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	98.94
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	98.94
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	98.93
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	98.93
3khq_A	133	B-cell antigen receptor complex-associated protei	98.93
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	98.93
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.93
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	98.92
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	98.92
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.92
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.91
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	98.9
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	98.9
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	98.89
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	98.88
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	98.88
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.87
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	98.87
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	98.87
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	98.87
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	98.87
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	98.86
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	98.86
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	98.86
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.86
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	98.85
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	98.84
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	98.84
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	98.84
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	98.83
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.82
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	98.82
1xt5_A	135	Variable region-containing chitin-binding protein	98.82
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	98.81
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.81
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	98.81
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	98.81
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.81
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	98.81
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	98.81
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	98.81
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	98.8
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.8
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	98.8
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.8
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	98.79
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.79
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	98.78
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	98.78
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	98.77
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.76
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	98.76
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	98.75
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	98.75
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	98.75
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	98.75
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.75
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.74
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	98.74
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	98.74
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.73
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.72
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.72
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.71
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	98.71
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	98.7
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	98.7
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	98.7
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.69
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	98.69
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.69
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	98.69
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.69
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	98.68
1he7_A	126	High affinity nerve growth factor receptor; transf	98.68
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	98.68
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	98.67
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	98.67
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.67
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	98.66
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	98.66
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	98.65
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	98.65
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	98.65
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	98.65
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	98.65
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	98.64
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.64
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.64
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	98.64
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.63
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	98.63
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.63
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.63
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.62
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.61
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	98.61
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.61
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	98.6
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	98.6
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	98.6
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.59
2ens_A	96	Advanced glycosylation END product-specific recept	98.59
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	98.58
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	98.58
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.58
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.58
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	98.58
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	98.58
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.57
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.57
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.57
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.57
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	98.57
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.56
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.56
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.56
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.56
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	98.56
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	98.56
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	98.55
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	98.55
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	98.54
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	98.54
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	98.54
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.54
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.53
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	98.53
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.53
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.52
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.51

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.87  E-value=2.7e-21  Score=119.27  Aligned_cols=140  Identities=26%  Similarity=0.482  Sum_probs=101.9

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee------eccceEEEee-cCCCCeEEE
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL------EGFSITLEKV-DRHQAGVYQ   77 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~------~~~~l~~~~~-~~~~~g~y~   77 (147)
                      +..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+.......      ....|.|.++ ...|+|.|.
T Consensus         3 ~~~~P~~~~~p~--~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~   80 (212)
T 2yd6_A            3 GETPPRFTRTPV--DQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYE   80 (212)
T ss_dssp             -CEEEEEEECCC--CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEE
T ss_pred             CCCCCeEEeCcc--eeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEE
Confidence            446888888776  5688999999999999888889999999988775433211      2346889999 599999999


Q ss_pred             EEeecCCCCceEEeEEEEEeee------------------------------------ecCCCCcc----cc--------
Q psy7616          78 CTATNGVGDPVTVDMTLEVLCK------------------------------------ILPSGEKS----LE--------  109 (147)
Q Consensus        78 C~~~~~~~~~~~~~~~l~v~~~------------------------------------~~~~~~~~----~~--------  109 (147)
                      |.+.+..+.. ...+.+.+...                                    |.+.|..+    ..        
T Consensus        81 C~a~n~~g~~-~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~  159 (212)
T 2yd6_A           81 CVASNNVGEI-SVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIK  159 (212)
T ss_dssp             EEEEETTEEE-EEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEE
T ss_pred             EEEEcCCCcE-EEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEE
Confidence            9999876653 45555555432                                    11122221    00        


Q ss_pred             ------CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 ------GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ------~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                            ...|.+.+++.+|+|.|+|.|.|..|...+..+.|.|+
T Consensus       160 ~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~~  203 (212)
T 2yd6_A          160 QLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVR  203 (212)
T ss_dssp             EEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEecCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEEE
Confidence                  14566688999999999999999999887777887763

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.86  E-value=8.2e-21  Score=115.68  Aligned_cols=137  Identities=29%  Similarity=0.444  Sum_probs=99.8

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-e--ee--ec--cceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-K--SL--EG--FSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~--~~--~~--~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+.... .  ..  ..  ..|.|.+++..|+|.|.|.
T Consensus         3 ~~P~~~~~~~--~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            3 MAPHFKEELR--NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCCEEEECCC--CEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEE
T ss_pred             CCCEEEEcCC--ccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEE
Confidence            4677877665  5689999999999999888889999999987764321 1  11  12  2799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeeeecCCCCcc---------ccC----------------------------------------
Q psy7616          80 ATNGVGDPVTVDMTLEVLCKILPSGEKS---------LEG----------------------------------------  110 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~---------~~~----------------------------------------  110 (147)
                      +.+..+.. ...+.+.+..+|.+.....         ..|                                        
T Consensus        81 ~~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~  159 (197)
T 2j8h_A           81 ATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF  159 (197)
T ss_dssp             EEETTEEE-EEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSE
T ss_pred             EEECCCce-eEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCc
Confidence            99876553 5556666654433321110         111                                        


Q ss_pred             CceEEee-cCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEK-VDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~-~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+ ++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus       160 ~~L~i~~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  196 (197)
T 2j8h_A          160 TSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDVA  196 (197)
T ss_dssp             EEEECTTCCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             eEEEEeCCCCcccCEeEEEEEEeCCCcE-eEEEEEEEe
Confidence            2344456 89999999999999999987 888888873

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.86  E-value=1.7e-20  Score=115.70  Aligned_cols=138  Identities=31%  Similarity=0.530  Sum_probs=100.7

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCC-Cce-e-e----eccceEEEeecC-CCCeEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS-GEK-S-L----EGFSITLEKVDR-HQAGVYQC   78 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~-~~~-~-~----~~~~l~~~~~~~-~~~g~y~C   78 (147)
                      .||.+...+.  ...+..|+.+.|.|.+.+.+.+.+.|++++..+.. ... . .    ....|.|.++.. .|+|.|.|
T Consensus         5 ~pP~~~~~p~--~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C   82 (212)
T 2yd1_A            5 HPPEIIRKPQ--NQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYEC   82 (212)
T ss_dssp             CCCEEEECCC--CEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEE
T ss_pred             CCCEEEcCCC--ceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEE
Confidence            5788888776  56899999999999999888899999999877742 111 1 1    124789999999 99999999


Q ss_pred             EeecCCCCceEEeEEEEEeee-------ec-----------------------------CCCCcc------------ccC
Q psy7616          79 TATNGVGDPVTVDMTLEVLCK-------IL-----------------------------PSGEKS------------LEG  110 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~l~v~~~-------~~-----------------------------~~~~~~------------~~~  110 (147)
                      .+.+..+...+..+.+.|...       |.                             +.|..+            ..+
T Consensus        83 ~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~  162 (212)
T 2yd1_A           83 VAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD  162 (212)
T ss_dssp             EEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEET
T ss_pred             EEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccC
Confidence            999887663355555655432       11                             112111            112


Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus       163 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V  198 (212)
T 2yd1_A          163 GFLQIENSREEDQGKYECVAENSMGTEHSKATNLYV  198 (212)
T ss_dssp             TEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEE
Confidence            357778999999999999999999988554577776

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.86  E-value=5.8e-21  Score=116.02  Aligned_cols=136  Identities=27%  Similarity=0.378  Sum_probs=98.9

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----ee---eeccceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.+.+.+.|++++..+....    ..   .....|.|.+++..|+|.|.|.
T Consensus         4 ~~P~~~~~~~--~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (194)
T 2a38_A            4 QAPTFTQPLQ--SVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLK   81 (194)
T ss_dssp             EEEEEEECCC--CEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCeEEccCC--ceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEE
Confidence            4677777665  5688999999999999888888999999988775432    11   1234799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEe---eeec-----------------------------CCCCcc-------------ccCC--c
Q psy7616          80 ATNGVGDPVTVDMTLEVL---CKIL-----------------------------PSGEKS-------------LEGF--S  112 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~---~~~~-----------------------------~~~~~~-------------~~~~--~  112 (147)
                      +.+..+.. ...+.+.+.   .+|.                             +.|..+             ..+.  .
T Consensus        82 ~~n~~~~~-~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~  160 (194)
T 2a38_A           82 ATNGSGQA-TSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYS  160 (194)
T ss_dssp             EEETTEEE-EEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEE
T ss_pred             EEcCCceE-eEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEE
Confidence            98876543 344444443   2221                             222221             0011  4


Q ss_pred             eEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         113 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      |.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       161 L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  193 (194)
T 2a38_A          161 LLIAEAYPEDSGTYSVNATNSVGRA-TSTAELLV  193 (194)
T ss_dssp             EEEEEECGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEECCCChhcCeEEEEEEEeCCCce-EEEEEEEE
Confidence            6778999999999999999999987 77888887

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.86  E-value=8.2e-21  Score=115.22  Aligned_cols=134  Identities=22%  Similarity=0.358  Sum_probs=96.9

Q ss_pred             eCCceEEcCCCCceEEee-CCeEEEEEeecCCCC--CceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616           7 VPPSIRTSPSNGQLTVRK-GGTITLECKASGNPV--PSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~-g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .||.+...+   ...+.. |+.+.|.|.+.+.+.  +.+.|++++..+...........|.|.++...|+|.|.|.+.+.
T Consensus         2 ~~P~i~~~~---~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~   78 (190)
T 2wv3_A            2 NEPRIVTSE---EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFV   78 (190)
T ss_dssp             -CCEEEECC---CEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCCSEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCcccccc---eEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEeccEEEEEecCCcccCEEEEEEEEeC
Confidence            467776633   345666 999999999887776  78999999988765544445678999999999999999999887


Q ss_pred             CCCceEEeEEEEEeeee-----------------------------cCCCCcccc---------C-----------CceE
Q psy7616          84 VGDPVTVDMTLEVLCKI-----------------------------LPSGEKSLE---------G-----------FSIT  114 (147)
Q Consensus        84 ~~~~~~~~~~l~v~~~~-----------------------------~~~~~~~~~---------~-----------~~~~  114 (147)
                       +. ....+.+.+..+|                             .+.|.....         .           ..|.
T Consensus        79 -~~-~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~  156 (190)
T 2wv3_A           79 -SA-PKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELN  156 (190)
T ss_dssp             -TE-EEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEE
T ss_pred             -Cc-ccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEE
Confidence             43 3455555554332                             223333100         0           1477


Q ss_pred             EeecC-CCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         115 LEKVD-RHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       115 l~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +.+++ .+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       157 i~~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V  188 (190)
T 2wv3_A          157 IVNLQITEDPGEYECNATNSIGSA-SVSTVLRV  188 (190)
T ss_dssp             ECSCCTTTSCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             EEeccccCCCEEEEEEEEecCCcc-eeEEEEEE
Confidence            78899 799999999999999987 77777766

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.86  E-value=4.6e-21  Score=116.31  Aligned_cols=138  Identities=30%  Similarity=0.437  Sum_probs=98.7

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc---e-eeeccceEEEeecCCCCeEEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE---K-SLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~---~-~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.+.+.+.|++++..+....   . ......|.|.+++..|+|.|.|.+.+
T Consensus         6 ~~P~i~~~~~--~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   83 (192)
T 2iep_A            6 KAPVITTPLE--TVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANN   83 (192)
T ss_dssp             EEEEESSCCC--EEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGTEEEESSCCGGGCEEEEEEEEC
T ss_pred             CCceeecCcc--ceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCccEEEEcCCCcccCeEEEEEEEc
Confidence            4555544443  5688999999999999888888999999987764321   1 12344689999999999999999998


Q ss_pred             CCCCceEEeEEEEEeeeecC-----------------------------CCCcc------------ccCCceEEeecCCC
Q psy7616          83 GVGDPVTVDMTLEVLCKILP-----------------------------SGEKS------------LEGFSITLEKVDRH  121 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~~~-----------------------------~~~~~------------~~~~~~~l~~~~~~  121 (147)
                      ..+........+.+..+|.+                             .|..+            .....|.+.+++.+
T Consensus        84 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  163 (192)
T 2iep_A           84 GVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKE  163 (192)
T ss_dssp             SSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGG
T ss_pred             CCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChh
Confidence            77664344445555443322                             22211            12335777899999


Q ss_pred             CCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         122 QAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       122 d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      |+|.|+|.|.|..|...+..+.|.|
T Consensus       164 d~G~Y~C~a~n~~g~~~s~~~~l~V  188 (192)
T 2iep_A          164 DAGQYRCVAKNSLGTAYSKLVKLEV  188 (192)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             hCEEEEEEEEcCCCcEEEEEEEEEE
Confidence            9999999999999977566677766

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.86  E-value=5.1e-20  Score=117.90  Aligned_cols=141  Identities=24%  Similarity=0.387  Sum_probs=104.7

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEE
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~   77 (147)
                      ..+..+|.+...+.. ...+..|+.+.|.|.+.+.|.+.+.|++++..+......     .....|.|.++...|+|.|.
T Consensus        93 l~V~~~p~~~~~~~~-~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  171 (284)
T 2rik_A           93 LGVQEPPRFIKKLEP-SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYT  171 (284)
T ss_dssp             EEEECCCEEEECCCS-EEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             EEccCCCcccccCCC-ceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEECCCCcccCEEEE
Confidence            345567777665443 456789999999999998899999999998876543221     12456889999999999999


Q ss_pred             EEeecCCCCceEEeEEEEEeeeecCCCCcc----ccC----------------------------------------Cce
Q psy7616          78 CTATNGVGDPVTVDMTLEVLCKILPSGEKS----LEG----------------------------------------FSI  113 (147)
Q Consensus        78 C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~----~~~----------------------------------------~~~  113 (147)
                      |.+.+..+.. ...+.+.+..+|.+...+.    ..|                                        ..|
T Consensus       172 C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L  250 (284)
T 2rik_A          172 CEAHNAAGSA-SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSI  250 (284)
T ss_dssp             EEEECSSCEE-EEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTEEECBTTTEEEEEETTEEEE
T ss_pred             EEEEcCCCce-eEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEcCCEEEE
Confidence            9999987764 6666777766554432221    111                                        135


Q ss_pred             EEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         114 TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       114 ~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       251 ~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  282 (284)
T 2rik_A          251 HILNVDSADIGEYQCKASNDVGSY-TCVGSITL  282 (284)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEcCCCcccCEEEEEEEEeCCCce-eEEEEEEE
Confidence            557899999999999999999988 77888877

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.85  E-value=1.2e-20  Score=131.53  Aligned_cols=141  Identities=30%  Similarity=0.444  Sum_probs=104.9

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee---ee--ccceEEEeecCCCCeEEE
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---LE--GFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~---~~--~~~l~~~~~~~~~~g~y~   77 (147)
                      +.+..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+......   ..  ...|.|.++...|+|.|.
T Consensus       379 l~V~~~P~~~~~~~--~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~  456 (570)
T 3b43_A          379 LKVKEPPVFRKKPH--PVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQ  456 (570)
T ss_dssp             ECEECCCEECSCCC--CEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             EEecCCCeeecCCC--ceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhhCEEEE
Confidence            34556777766655  457789999999999999999999999999877543321   11  236889999999999999


Q ss_pred             EEeecCCCCceEEeEEEEEeeee-----------------------------cCCCCcc-----cc-----------CCc
Q psy7616          78 CTATNGVGDPVTVDMTLEVLCKI-----------------------------LPSGEKS-----LE-----------GFS  112 (147)
Q Consensus        78 C~~~~~~~~~~~~~~~l~v~~~~-----------------------------~~~~~~~-----~~-----------~~~  112 (147)
                      |.+.|..|.. ...+.+.+..+|                             .+.|.++     ..           ...
T Consensus       457 C~A~N~~G~~-~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~  535 (570)
T 3b43_A          457 CKASNDVGSD-TCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIAT  535 (570)
T ss_dssp             EEEECSSCEE-EEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTEECCCCTTTEEECCCSSEEE
T ss_pred             EEEEECCCeE-EEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCeEeccCCCeEEEEECCCEEE
Confidence            9999988764 445555554433                             2334332     00           124


Q ss_pred             eEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         113 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      |.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus       536 L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~a~L~V~  569 (570)
T 3b43_A          536 LQFSRAEPANAGKYTCQIKNEAGTQ-ECFATLSVL  569 (570)
T ss_dssp             EEESSCCTTCCEEEEEEEECSSCEE-EEEEEECCB
T ss_pred             EEECcCCHHHCEEEEEEEEECCcEE-EEEEEEEEe
Confidence            6678899999999999999999988 888998875

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.85  E-value=3.8e-20  Score=111.92  Aligned_cols=137  Identities=18%  Similarity=0.335  Sum_probs=94.5

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC----ceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      +|.|...+.  ...+..|+.+.|.|.+.+.+.+.+.|++++..+...    ........|.|.+++..|+|.|.|.+.+.
T Consensus         2 ~~~~~~~~~--~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~   79 (189)
T 2v5t_A            2 MLTFREVVS--PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVE   79 (189)
T ss_dssp             CCEEEECCS--SEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTSCEEETTCCGGGCEEEEEEEEET
T ss_pred             CceeeccCC--CEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCCCEEEeeCCHhHCcEEEEEEEEc
Confidence            567777666  458899999999999988888899999998766421    11234567999999999999999999886


Q ss_pred             CCCce-EEeEEEEEeeeecC-------------------------------CCCcc-------------ccCCceEEeec
Q psy7616          84 VGDPV-TVDMTLEVLCKILP-------------------------------SGEKS-------------LEGFSITLEKV  118 (147)
Q Consensus        84 ~~~~~-~~~~~l~v~~~~~~-------------------------------~~~~~-------------~~~~~~~l~~~  118 (147)
                      .+... ...+.+.+..+|.+                               .|..+             ..+..+.+.++
T Consensus        80 ~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~  159 (189)
T 2v5t_A           80 ARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNI  159 (189)
T ss_dssp             TTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSC
T ss_pred             CCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCC
Confidence            54321 23344444433322                               22211             11335777899


Q ss_pred             CCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         119 DRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       119 ~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      +.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus       160 ~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  187 (189)
T 2v5t_A          160 INSDGGPYVCRATNKAGED-EKQAFLQVF  187 (189)
T ss_dssp             CGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             ChhhCeeEEEEEEeCCCce-eEEEEEEEE
Confidence            9999999999999999987 667777763

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.84  E-value=4.6e-20  Score=112.28  Aligned_cols=136  Identities=18%  Similarity=0.224  Sum_probs=97.5

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCCce----e--ee--------ccceEEEeecCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEK----S--LE--------GFSITLEKVDRHQ   72 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~----~--~~--------~~~l~~~~~~~~~   72 (147)
                      +|.|...|.  ...+..|+.+.|.|.+. +.|.+.+.|++++..+.....    .  ..        ...|.|.+++..|
T Consensus         2 ~~~~~~~p~--~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   79 (195)
T 2c5d_C            2 ESPFVGNPG--NITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSD   79 (195)
T ss_dssp             CCSEEECCC--CEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTT
T ss_pred             CCeeccChh--heEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccC
Confidence            577777766  56899999999999998 888889999999887754421    1  11        4579999999999


Q ss_pred             CeEEEEEeecCCCCceEEeEEEEEeeee------------------------------cCCCCcc----------ccCCc
Q psy7616          73 AGVYQCTATNGVGDPVTVDMTLEVLCKI------------------------------LPSGEKS----------LEGFS  112 (147)
Q Consensus        73 ~g~y~C~~~~~~~~~~~~~~~l~v~~~~------------------------------~~~~~~~----------~~~~~  112 (147)
                      +|.|.|.+.+..+...+..+.+.+..+|                              .+.|..+          ..+..
T Consensus        80 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~  159 (195)
T 2c5d_C           80 TGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRS  159 (195)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSCCEE
T ss_pred             CcEEEEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCCCCe
Confidence            9999999988654432233444443322                              2333332          03345


Q ss_pred             eEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         113 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      |.+.+++  |+|.|+|.|.|..|...+..+.|.|+
T Consensus       160 L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V~  192 (195)
T 2c5d_C          160 LHVPGLN--KTSSFSCEAHNAKGVTTSRTATITVL  192 (195)
T ss_dssp             EEECCCS--SCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEcccc--cCceEEEEEEcCCCceEEEEEEEEEe
Confidence            6666666  89999999999999875578888874

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.84  E-value=4.4e-20  Score=112.23  Aligned_cols=139  Identities=24%  Similarity=0.415  Sum_probs=99.5

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eee---ccceEEEeecCCCCeEEEEE
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLE---GFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~---~~~l~~~~~~~~~~g~y~C~   79 (147)
                      +..+|.+...+.  .+.+..|+.+.|.|.+.+.+.+.+.|++++..+.....  ...   ...|.|.++...|+|.|.|.
T Consensus         4 ~~~~P~~~~~~~--~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   81 (197)
T 3lcy_A            4 SGEAPGIRKEMK--DVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCI   81 (197)
T ss_dssp             CCEEEEEEECCC--CEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEE
T ss_pred             cCCCCcccccCC--ceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEE
Confidence            345777877765  66899999999999998888889999999876643322  111   22699999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeeeecCCCC----cc---ccC----------------------------------------Cc
Q psy7616          80 ATNGVGDPVTVDMTLEVLCKILPSGE----KS---LEG----------------------------------------FS  112 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~~~----~~---~~~----------------------------------------~~  112 (147)
                      +.+..+.. .....+.+..+|.+...    ..   ..|                                        ..
T Consensus        82 ~~n~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~  160 (197)
T 3lcy_A           82 ATNEVGEV-ETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTH  160 (197)
T ss_dssp             EECSSCEE-EEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEE
T ss_pred             EECCCCce-eEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEE
Confidence            99876653 45555555544332211    00   111                                        23


Q ss_pred             eEEeecCC-CCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         113 ITLEKVDR-HQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       113 ~~l~~~~~-~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      +.+.++.. +|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       161 L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  195 (197)
T 3lcy_A          161 LVMKNVQRKTHAGKYKVQLSNVFGTV-DAILDVEIQ  195 (197)
T ss_dssp             EEESSCCHHHHCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             EEEccccchhhCceEEEEEEcCcCce-EEEEEEEEe
Confidence            45566764 89999999999999988 778888773

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.84  E-value=2.5e-20  Score=124.22  Aligned_cols=127  Identities=28%  Similarity=0.478  Sum_probs=95.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC-CCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS-SLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~-~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ...+..|+.+.|.|.+.+.|.|.+.|+++++ .+..... ......|.|.+++..|+|.|.|.+.|..|.. .....+.+
T Consensus       214 ~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~v  292 (384)
T 3kld_A          214 TVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKN-VAKGQLTF  292 (384)
T ss_dssp             EEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             ceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeE-EEEEEEEE
Confidence            5577889999999999999999999999544 4433222 2234579999999999999999999987764 44445555


Q ss_pred             eeeec-----------------------------CCCCcc-----------ccCCceEEeecCCCCCeEEEEEeecCCCC
Q psy7616          97 LCKIL-----------------------------PSGEKS-----------LEGFSITLEKVDRHQAGVYQCTATNGVGD  136 (147)
Q Consensus        97 ~~~~~-----------------------------~~~~~~-----------~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~  136 (147)
                      ..+|.                             +.|.++           ..+..|.+.+++.+|+|.|+|.|.|..|.
T Consensus       293 ~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~  372 (384)
T 3kld_A          293 YAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHGV  372 (384)
T ss_dssp             EEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEECCCBTTEEEETTEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             ecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEECCCCccEEEeCCEEEEeecChhhCEEEEEEEEeCCce
Confidence            44332                             333322           12346777889999999999999999998


Q ss_pred             CcCeeeEEEEC
Q psy7616         137 PVTVDMTLEVL  147 (147)
Q Consensus       137 ~~~~~~~l~V~  147 (147)
                      . ...+.|.|+
T Consensus       373 ~-~~~a~L~V~  382 (384)
T 3kld_A          373 I-FSSAELSVI  382 (384)
T ss_dssp             E-EEEEEEEEC
T ss_pred             E-EeceEEEEe
Confidence            8 778888885

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.84  E-value=7.1e-20  Score=111.71  Aligned_cols=136  Identities=17%  Similarity=0.273  Sum_probs=95.0

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee----eeccceEEEeecCCCCeEEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+|.+...|..   .+..|++++|.|.+.+ +.+.+.|++++..+......    .....|.|.+++..|+|.|.|.+.+
T Consensus         4 ~~P~i~~~p~~---~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 3p2t_A            4 PKPTLWAEPGS---VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRS   79 (196)
T ss_dssp             CCCEEEEESCS---EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEccCCC---cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeC
Confidence            46777776653   7889999999999888 77899999999877532211    2446799999999999999999988


Q ss_pred             CCC-CceEEeEEEEEeee---e---------------------------cCCCCccc----------------cCCceEE
Q psy7616          83 GVG-DPVTVDMTLEVLCK---I---------------------------LPSGEKSL----------------EGFSITL  115 (147)
Q Consensus        83 ~~~-~~~~~~~~l~v~~~---~---------------------------~~~~~~~~----------------~~~~~~l  115 (147)
                      ..+ ...+..+.+.+...   |                           .+.|.++.                ....+.|
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i  159 (196)
T 3p2t_A           80 PVGWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGKSVTLLCQSRSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPM  159 (196)
T ss_dssp             TTEEBCCCCCEEEEEECSSCCCEEEEESCSEECTTCCEEEEEEEEEEEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEE
T ss_pred             CCcccCCCccEEEEecCCCCCCEEEeCCcceecCCCeEEEEEecCCCCCEEEEEeCCCcccceeecccccccCcceEEEe
Confidence            765 12233444444311   1                           11111110                1234666


Q ss_pred             eecCCCCCeEEEEEeecCCC----CCcCeeeEEEE
Q psy7616         116 EKVDRHQAGVYQCTATNGVG----DPVTVDMTLEV  146 (147)
Q Consensus       116 ~~~~~~d~G~Y~C~a~n~~g----~~~~~~~~l~V  146 (147)
                      .+++.+|+|.|+|.|.|..+    ...+..+.|.|
T Consensus       160 ~~v~~~d~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  194 (196)
T 3p2t_A          160 SPVTSVHGGTYRCFSSHGFSHYLLSHPSDPLELIV  194 (196)
T ss_dssp             CSCCGGGCEEEEEEEECGGGTTEECCCCCCEEEEE
T ss_pred             CCCcccCCCeEEEEEEcCCCCcccCCCCCCEEEEe
Confidence            88999999999999999987    44577788877

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.84  E-value=6.1e-20  Score=113.73  Aligned_cols=133  Identities=21%  Similarity=0.300  Sum_probs=98.4

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      .+.+...+.  ...+..|+.+.|.|.+.+.+.+.+.|++++..+...    ....|.|.+++..|+|.|.|.+.+..+..
T Consensus        18 ~~~i~~~p~--~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~   91 (218)
T 3k0w_A           18 GSKITVNPE--SKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNG----NTSELIFNAVHVKDAGFYVCRVNNNFTFE   91 (218)
T ss_dssp             -CCEEECCC--CEEEETTSBEEEECEETTTTSSEEEEEETTEECTTC----CSSEEEETTCCGGGCEEEEEEEECTTCCE
T ss_pred             CCEEEECCC--CeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCC----CCCEEEEccCChhhCeEeEEEEEcCCCCc
Confidence            456666665  568999999999999998888899999998776432    34679999999999999999999876643


Q ss_pred             eEEeEEEEEeee--------------------------------------------ecCCCCcc------ccCCceEEee
Q psy7616          88 VTVDMTLEVLCK--------------------------------------------ILPSGEKS------LEGFSITLEK  117 (147)
Q Consensus        88 ~~~~~~l~v~~~--------------------------------------------~~~~~~~~------~~~~~~~l~~  117 (147)
                      .+..+.+.+...                                            |.+.|..+      .....+.+.+
T Consensus        92 ~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~~~L~i~~  171 (218)
T 3k0w_A           92 FSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLYMVPY  171 (218)
T ss_dssp             ECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCSSEEEESS
T ss_pred             eeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCCCEEEEee
Confidence            333444444322                                            11122211      1233577789


Q ss_pred             cCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         118 VDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       118 ~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus       172 v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  200 (218)
T 3k0w_A          172 VDLEHQGTYWCHVYNDRDSQDSKKVEIII  200 (218)
T ss_dssp             CCGGGCEEEEEEEECSSCEEECCCEEEEE
T ss_pred             cChhcCEEEEEEEEcCCCCceeeeEEEEE
Confidence            99999999999999999986677888876

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.84  E-value=6e-20  Score=110.59  Aligned_cols=134  Identities=22%  Similarity=0.320  Sum_probs=92.6

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee---e----ccceEEEeecCCCCeEEEEEee
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL---E----GFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~---~----~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      |.+...+.  ...+..|+.+.|.|.+.+.+.+.+.|++++..+.......   .    ...|.|.+++..|+|.|.|.+.
T Consensus         3 ~~~~~~p~--~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   80 (182)
T 1rhf_A            3 LKLMGAPV--KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVE   80 (182)
T ss_dssp             ----CCCE--EEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEES
T ss_pred             CEEEeCCc--ceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEE
Confidence            34444443  5688999999999999888889999999988775443211   1    3578899999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeeecC------------------------------CCCcc--------ccCCceEEeecCCCCC
Q psy7616          82 NGVGDPVTVDMTLEVLCKILP------------------------------SGEKS--------LEGFSITLEKVDRHQA  123 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~------------------------------~~~~~--------~~~~~~~l~~~~~~d~  123 (147)
                      +..+...+..+.+.+..+|.+                              .|..+        ..+..|.+.++  +|+
T Consensus        81 ~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~L~i~~~--~d~  158 (182)
T 1rhf_A           81 DGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVLNVTGV--TQS  158 (182)
T ss_dssp             SCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEESSEEEEECCC--SSC
T ss_pred             cCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCCCceEEEEecc--ccC
Confidence            875543344555655543332                              22221        02233444555  699


Q ss_pred             eEEEEEeecCCCCCcCeeeEEEE
Q psy7616         124 GVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       124 G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      |.|+|.|.|..|...+..+.|.|
T Consensus       159 G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          159 TMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEEEEECCCCCcccceEEEEe
Confidence            99999999999987556888877

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.83  E-value=1.8e-19  Score=125.57  Aligned_cols=140  Identities=25%  Similarity=0.390  Sum_probs=101.9

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEE
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+..+|.+...... ...+..|+.+.|.|.+.+.|.+.+.|++++..+......     .....|.|.+++..|+|.|.|
T Consensus       286 ~V~~~p~~~~~~~~-~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C  364 (570)
T 3b43_A          286 GVQEPPRFIKKLEP-SRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTC  364 (570)
T ss_dssp             CCBCCCEEEECCCS-BCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEEESCCGGGCEEEEE
T ss_pred             EeecCCcccccCCC-ccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEECCCCcccCEEEEE
Confidence            34467777655433 235789999999999999999999999999877543321     123468899999999999999


Q ss_pred             EeecCCCCceEEeEEEEEeeeecC-----------------------------CCCcc----ccC-----------CceE
Q psy7616          79 TATNGVGDPVTVDMTLEVLCKILP-----------------------------SGEKS----LEG-----------FSIT  114 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~l~v~~~~~~-----------------------------~~~~~----~~~-----------~~~~  114 (147)
                      .+.|..|.. ...+.|.|..+|.+                             .|.++    ..+           ..|.
T Consensus       365 ~a~N~~g~~-~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~  443 (570)
T 3b43_A          365 EAHNAAGSA-SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIH  443 (570)
T ss_dssp             EEEBTTBCC-EEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSSEEEEEETTEEEEE
T ss_pred             EEEeCCCEE-EEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEE
Confidence            999988765 55666666554432                             23222    001           1355


Q ss_pred             EeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         115 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       115 l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       444 i~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~v  474 (570)
T 3b43_A          444 ILNVDSADIGEYQCKASNDVGSD-TCVGSITL  474 (570)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             ECCCChhhCEEEEEEEEECCCeE-EEEEEEEe
Confidence            67899999999999999999987 66677765

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.83  E-value=2e-19  Score=109.03  Aligned_cols=137  Identities=17%  Similarity=0.336  Sum_probs=94.3

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCC-CCceEEEe-cCCCCCCCc-e--e----eeccceEEEeecCCCCeEEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSK-KDSSLPSGE-K--S----LEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~w~~-~~~~~~~~~-~--~----~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      |+.+...|.  ...+..|+.+.|.|.+.+.+ .+.+.|++ ++..+.... .  .    .....|.|.+++..|+|.|.|
T Consensus         2 p~~v~~~p~--~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C   79 (191)
T 1epf_A            2 VLQVDIVPS--QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC   79 (191)
T ss_dssp             -CCEEEESS--SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             ceEEEecCC--CcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEE
Confidence            345666665  55889999999999998866 78899999 666554211 1  1    134579999999999999999


Q ss_pred             EeecCCCCceEEeEEEEEeeeecC-----------------------------CCCcc--------------ccCCceEE
Q psy7616          79 TATNGVGDPVTVDMTLEVLCKILP-----------------------------SGEKS--------------LEGFSITL  115 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~l~v~~~~~~-----------------------------~~~~~--------------~~~~~~~l  115 (147)
                      .+.+..+......+.+.+..+|.+                             .|..+              ..+..|.+
T Consensus        80 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i  159 (191)
T 1epf_A           80 VVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI  159 (191)
T ss_dssp             EEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEE
T ss_pred             EEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEE
Confidence            999876443455666666443222                             12111              12236777


Q ss_pred             eecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         116 EKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       116 ~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      .+++.+|+|.|+|.|.|..|.. ....+++.|
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v~V  191 (191)
T 1epf_A          160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIV  191 (191)
T ss_dssp             TTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEC
T ss_pred             CCCChhhCEEEEEEEEEecceeEEEEEEEEeC
Confidence            8999999999999999998544 344455443

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.83  E-value=3.1e-19  Score=114.28  Aligned_cols=136  Identities=24%  Similarity=0.384  Sum_probs=100.3

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .||.+...|.  ...+..|+.+.|.|.+.+.+.+.+.|++++..+......     .....|.|.+++..|+|.|.|.+.
T Consensus         4 ~pP~~~~~p~--~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~   81 (284)
T 2rik_A            4 APPFFDLKPV--SVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYAS   81 (284)
T ss_dssp             CCCEEEECCC--CEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEcccc--ceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEE
Confidence            5788877776  568899999999999998888899999998877543221     124579999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeeecC------------------------------CCCcc----c-----------cCCceEEe
Q psy7616          82 NGVGDPVTVDMTLEVLCKILP------------------------------SGEKS----L-----------EGFSITLE  116 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~------------------------------~~~~~----~-----------~~~~~~l~  116 (147)
                      +..+.. +..+.+.+..+|.+                              .|..+    .           ....|.+.
T Consensus        82 n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~  160 (284)
T 2rik_A           82 NVAGKD-SCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMY  160 (284)
T ss_dssp             ETTEEE-EEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEEEC
T ss_pred             ECCceE-EEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEC
Confidence            876553 55556666544322                              11111    0           01235667


Q ss_pred             ecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         117 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       117 ~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       161 ~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  189 (284)
T 2rik_A          161 NLSVEDSGDYTCEAHNAAGSA-SSSTSLKV  189 (284)
T ss_dssp             SCCGGGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             CCCcccCEEEEEEEEcCCCce-eEEEEEEE
Confidence            899999999999999999877 66777766

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.83  E-value=2.4e-19  Score=115.12  Aligned_cols=141  Identities=18%  Similarity=0.336  Sum_probs=100.5

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEeecCCCCeEEEEE
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+....    .......|.|.++...|+|.|.|.
T Consensus        96 ~v~~~~~~~~~~~--~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  173 (291)
T 1qz1_A           96 KIFQKLMFKNAPT--PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE  173 (291)
T ss_dssp             EEECCSEEEECCS--SEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEETTCCGGGCEEEEEE
T ss_pred             EeeccccccCCCC--cccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEEccCccccCeEEEEE
Confidence            3445666666555  4578899999999999888889999999987764221    123456799999999999999999


Q ss_pred             eecCCCCc-eEEeEEEEEeeeec-------------------------------CCCCcc----c-------------cC
Q psy7616          80 ATNGVGDP-VTVDMTLEVLCKIL-------------------------------PSGEKS----L-------------EG  110 (147)
Q Consensus        80 ~~~~~~~~-~~~~~~l~v~~~~~-------------------------------~~~~~~----~-------------~~  110 (147)
                      +.+..+.. ....+.+.+..+|.                               +.|..+    .             .+
T Consensus       174 a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~  253 (291)
T 1qz1_A          174 GRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS  253 (291)
T ss_dssp             EEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTS
T ss_pred             EEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCC
Confidence            98754322 22334444433322                               223222    0             12


Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus       254 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  289 (291)
T 1qz1_A          254 SELTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLKVF  289 (291)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             cEEEEEecChhcCEEEEEEEEeCCCce-EEEEEEEEE
Confidence            357788999999999999999999987 888888874

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.82  E-value=6.2e-20  Score=112.71  Aligned_cols=118  Identities=17%  Similarity=0.135  Sum_probs=82.3

Q ss_pred             ceEEeeCCeEEEEEe---ecCCCCCceEEEecCCCCCCCc------------------e----eeeccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECK---ASGNPVPSIIWSKKDSSLPSGE------------------K----SLEGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~---~~~~~~~~v~w~~~~~~~~~~~------------------~----~~~~~~l~~~~~~~~~~   73 (147)
                      .+++..|+.++|.|.   ..+.|.+.+.|++++.......                  .    ......|.|.+++..|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            357889999999995   4566888999999875432100                  0    01233689999999999


Q ss_pred             eEEEEEeecCCCCceEEeEEEEEeee-----------------------------ecCCCCcc----------------c
Q psy7616          74 GVYQCTATNGVGDPVTVDMTLEVLCK-----------------------------ILPSGEKS----------------L  108 (147)
Q Consensus        74 g~y~C~~~~~~~~~~~~~~~l~v~~~-----------------------------~~~~~~~~----------------~  108 (147)
                      |.|.|.+.|..+.. +..+.|.|..|                             |.+.|..+                .
T Consensus        82 G~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~  160 (203)
T 4fa8_A           82 GNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKE  160 (203)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEEC
T ss_pred             eEEEEEEEcCCCcE-EEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEe
Confidence            99999999876653 55555665543                             33344321                1


Q ss_pred             cCCceEE---eecCCCCCeEEEEEeecCCCCC
Q psy7616         109 EGFSITL---EKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       109 ~~~~~~l---~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      ..+++.+   .+++.+|+|.|+|.|.|..|.+
T Consensus       161 ~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a  192 (203)
T 4fa8_A          161 KDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEA  192 (203)
T ss_dssp             TTSCEEEEEEEEECSSCCCCEEEEEESSSCEE
T ss_pred             CCCCEEEEEECCCCHHHCEEEEEEEEcCCCEE
Confidence            1222322   5889999999999999999977

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.82  E-value=1.2e-19  Score=111.53  Aligned_cols=130  Identities=16%  Similarity=0.256  Sum_probs=93.0

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCc-eEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      .+|.+...|.  ...+..|+.+.|.|.+.+.+.+. +.|++++..+...     ...|.|.+++..|+|.|.|.+.+...
T Consensus         6 p~p~i~~~p~--~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~~   78 (204)
T 3sgj_C            6 PKAVVFLEPQ--WYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQ-----ASSYFIDAATVDDSGEYRCQTQLSTL   78 (204)
T ss_dssp             CBCEEEEESC--CSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCC-----SSEEEESSCCGGGCEEEEEEETTSBC
T ss_pred             CCCeEEEcCC--CeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccC-----ccEEEEecccccCCEEEEEEeCCCcc
Confidence            4566677766  34889999999999998877665 9999998766432     26789999999999999999987432


Q ss_pred             CceEEeEEEEEeee-----------------------------ecCCCCcc-------ccCCceEEeecCCCCCeEEEEE
Q psy7616          86 DPVTVDMTLEVLCK-----------------------------ILPSGEKS-------LEGFSITLEKVDRHQAGVYQCT  129 (147)
Q Consensus        86 ~~~~~~~~l~v~~~-----------------------------~~~~~~~~-------~~~~~~~l~~~~~~d~G~Y~C~  129 (147)
                         +..+.+.+..+                             +.+.|.++       ..+..|.+.+++.+|+|.|+|.
T Consensus        79 ---s~~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D~G~Y~C~  155 (204)
T 3sgj_C           79 ---SDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCR  155 (204)
T ss_dssp             ---CCCEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEE
T ss_pred             ---cccEEEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCcccCEEEEEE
Confidence               22333333321                             12233322       2345677789999999999999


Q ss_pred             eecCCCCCcCeeeEEEE
Q psy7616         130 ATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       130 a~n~~g~~~~~~~~l~V  146 (147)
                      |.|..+...+..+.|.|
T Consensus       156 a~n~~~~~~s~~~~l~V  172 (204)
T 3sgj_C          156 GLVGSKNVSSETVQITI  172 (204)
T ss_dssp             EEETTEEEECCCEEEEE
T ss_pred             EEeCCCceecCcEEEEE
Confidence            99965444477777776

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.82  E-value=8.1e-19  Score=106.10  Aligned_cols=132  Identities=22%  Similarity=0.244  Sum_probs=91.0

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      ..+|.+...+..   .+..|++++|.|.+.+ +.+.+.|++++..     .......|.|.+++..|+|.|.|.+.+..+
T Consensus         6 ~~~P~i~~~p~~---~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~-----~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g   76 (184)
T 2gi7_A            6 LPKPSLQALPSS---LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS-----RYQDQAVLFIPAMKRSLAGRYRCSYQNGSL   76 (184)
T ss_dssp             BCCCEEEEESCS---EEETTCCEEEEEECST-TCSEEEEEETTTC-----CEESSSEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCCCeEEeCCCc---cccCCCcEEEEEeCCC-CCCEEEEEECCcc-----ccCcccEEEECcCChhhCceEEEEEEcCCC
Confidence            356777776652   7899999999999877 7789999998865     233556799999999999999999988653


Q ss_pred             C-ceEEeEEEEEee---eecC---------------------------CCCcc-----------ccCCceEEeecCCCCC
Q psy7616          86 D-PVTVDMTLEVLC---KILP---------------------------SGEKS-----------LEGFSITLEKVDRHQA  123 (147)
Q Consensus        86 ~-~~~~~~~l~v~~---~~~~---------------------------~~~~~-----------~~~~~~~l~~~~~~d~  123 (147)
                      . ..+..+.+.+..   +|.+                           .|.++           ..+..+.|.+++.+|+
T Consensus        77 ~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~l~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~  156 (184)
T 2gi7_A           77 WSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQCQTRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHS  156 (184)
T ss_dssp             EBCCCCCEEEEEESSSCCCEEEEECCCSSCCTTCEEEEEECSSCCCEEEEEECCCCTTSCCCCEEEEESSSEEEETTCCS
T ss_pred             ccCCCCCEEEEecCcCCCCEEEeCCCceecCCCcEEEEEEcCCCCcEEEEEECCCcCcceecCCCceEEEEEccCCccCC
Confidence            2 113334444421   1111                           11111           0123456689999999


Q ss_pred             eEEEEEeecCCCC----CcCeeeEEEE
Q psy7616         124 GVYQCTATNGVGD----PVTVDMTLEV  146 (147)
Q Consensus       124 G~Y~C~a~n~~g~----~~~~~~~l~V  146 (147)
                      |.|+|.|.|..+.    ..+..+.|.|
T Consensus       157 G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          157 GTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             EEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             eEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence            9999999998542    2466777776

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.81  E-value=6.2e-19  Score=117.74  Aligned_cols=126  Identities=28%  Similarity=0.430  Sum_probs=98.1

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+.....  ......|.|.++...|+|.|.|.+.|..+.. +..+.+.+.
T Consensus       232 ~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~  310 (404)
T 3p3y_A          232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVRVK  310 (404)
T ss_dssp             EEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             ceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcE-EEEEEEEEe
Confidence            4678899999999999988999999999988754432  2235679999999999999999999987763 566666665


Q ss_pred             eeecC-----------------------------CCCcc--------------ccCCceEEeecCCCCCeEEEEEeecCC
Q psy7616          98 CKILP-----------------------------SGEKS--------------LEGFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus        98 ~~~~~-----------------------------~~~~~--------------~~~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      .+|.+                             .|..+              ..+..|.+.+++.+|+|.|+|.|.|..
T Consensus       311 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  390 (404)
T 3p3y_A          311 AAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGDTIIFRDTQISSRAVYQCNTSNEH  390 (404)
T ss_dssp             EEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEEGGGSCCCTTEEEETTEEEESSCCSSCCCEEEEEEEETT
T ss_pred             CCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEecCCCCCCceEEecCCEEEEeecCHHHCEEEEEEEEeCC
Confidence            54432                             22221              123457778999999999999999999


Q ss_pred             CCCcCeeeEEEEC
Q psy7616         135 GDPVTVDMTLEVL  147 (147)
Q Consensus       135 g~~~~~~~~l~V~  147 (147)
                      |.. +..+.|.|+
T Consensus       391 G~~-~~~~~l~V~  402 (404)
T 3p3y_A          391 GYL-LANAFVSVL  402 (404)
T ss_dssp             EEE-EEEEEEEEC
T ss_pred             CcE-EEEEEEEEE
Confidence            988 788888875

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.81  E-value=1.5e-19  Score=108.50  Aligned_cols=130  Identities=16%  Similarity=0.275  Sum_probs=94.0

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCc-eEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.+.+. +.|++++..+..     ....|.|.+++..|+|.|.|.+.+...
T Consensus         6 ~~p~i~~~p~--~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~-----~~~~L~i~~~~~~d~G~Y~C~~~n~~~   78 (175)
T 1fnl_A            6 PKAVVFLEPQ--WYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-----QASSYFIDAATVNDSGEYRCQTNLSTL   78 (175)
T ss_dssp             CCCEEEEESC--CSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-----SCSEEEESSCCGGGCEEEEEECSSSCC
T ss_pred             CCCEEEEcCC--ceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC-----CceEEEEeCCCcccCEEEEEEeeCCcc
Confidence            4677777766  34789999999999998877665 889999865532     356789999999999999999987443


Q ss_pred             CceEEeEEEEEeee-----------------------------ecCCCCcc-------ccCCceEEeecCCCCCeEEEEE
Q psy7616          86 DPVTVDMTLEVLCK-----------------------------ILPSGEKS-------LEGFSITLEKVDRHQAGVYQCT  129 (147)
Q Consensus        86 ~~~~~~~~l~v~~~-----------------------------~~~~~~~~-------~~~~~~~l~~~~~~d~G~Y~C~  129 (147)
                      .   ..+.+.+..+                             +.+.|.++       ..+..|.+.+++.+|+|.|+|.
T Consensus        79 s---~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  155 (175)
T 1fnl_A           79 S---DPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCR  155 (175)
T ss_dssp             C---CCEEEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEE
T ss_pred             c---ccEEEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChhhCeEEEEE
Confidence            2   2233333211                             12233332       2345677789999999999999


Q ss_pred             eecCCCCCcCeeeEEEE
Q psy7616         130 ATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       130 a~n~~g~~~~~~~~l~V  146 (147)
                      |.|..|...+..+.|.|
T Consensus       156 a~n~~~~~~s~~~~l~V  172 (175)
T 1fnl_A          156 GLVGSKNVSSETVNITI  172 (175)
T ss_dssp             EEETTEEEECCCEEEEE
T ss_pred             EEcCCCCccCccEEEEE
Confidence            99987765577888877

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.81  E-value=5.4e-19  Score=114.19  Aligned_cols=136  Identities=27%  Similarity=0.376  Sum_probs=99.1

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-e--e-e-e--ccceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-K--S-L-E--GFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~--~-~-~--~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+.... .  . . .  ...|.|.+++..|+|.|.|.
T Consensus         3 ~~P~~~~~p~--~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            3 MAPHFKEELR--NLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCCEEEECCC--CEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEE
T ss_pred             CCCeeeeccc--ceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEE
Confidence            4788877776  5689999999999999888899999999987764321 1  1 1 1  22799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeeeecCC----------------------------------CCcc----c-----------cC
Q psy7616          80 ATNGVGDPVTVDMTLEVLCKILPS----------------------------------GEKS----L-----------EG  110 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~----------------------------------~~~~----~-----------~~  110 (147)
                      +.+..+.. ...+.|.+..+|.+.                                  |..+    .           ..
T Consensus        81 a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~  159 (305)
T 2nzi_A           81 ATNQGGSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSF  159 (305)
T ss_dssp             EEETTEEE-EEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSE
T ss_pred             EEcCCCCc-cceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCc
Confidence            99876653 556666665444322                                  1111    0           01


Q ss_pred             CceEEee-cCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEK-VDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~-~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+.+.+ ++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       160 ~~l~i~~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v  195 (305)
T 2nzi_A          160 TSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDV  195 (305)
T ss_dssp             EEEEETTCCCSTTCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             eEEEEecCCccCccEEEEEEEEeCCCce-eeEEEEEE
Confidence            2344456 99999999999999999987 66777765

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.81  E-value=2.9e-19  Score=118.75  Aligned_cols=136  Identities=29%  Similarity=0.399  Sum_probs=100.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      +|.+....+. ...+..|+.+.|.|.+.+.|.+.+.|++++..+.. ........|.|.++...|+|.|.|.+.+..+..
T Consensus       206 ~P~~~~~~~~-~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  283 (382)
T 1cs6_A          206 APSIKAKFPA-DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-KWLSSEPLLHIQNVDFEDEGTYECEAENIKGRD  283 (382)
T ss_dssp             EEEEEECCCS-EEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC-CCSBSSSEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCceeccCCC-ceEEeCCCeEEEEEEEccCCCCEEEEEECCccccc-EEecCCcEEEEccCChhhCEEEEEEEEcCCCeE
Confidence            4555443322 56788999999999998888899999998877653 223345678999999999999999999877653


Q ss_pred             eEEeEEEEEeeeecC-----------------------------CCCcc-----------ccCCceEEeecCCCCCeEEE
Q psy7616          88 VTVDMTLEVLCKILP-----------------------------SGEKS-----------LEGFSITLEKVDRHQAGVYQ  127 (147)
Q Consensus        88 ~~~~~~l~v~~~~~~-----------------------------~~~~~-----------~~~~~~~l~~~~~~d~G~Y~  127 (147)
                       ...+.+.+..+|.+                             .|..+           ..+..|.+.+++.+|+|.|+
T Consensus       284 -~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  362 (382)
T 1cs6_A          284 -TYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQ  362 (382)
T ss_dssp             -EEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEE
T ss_pred             -EEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEECCCCceEEEECCEEEECcCCcccCEEEE
Confidence             55555665544332                             22222           11235777899999999999


Q ss_pred             EEeecCCCCCcCeeeEEEEC
Q psy7616         128 CTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       128 C~a~n~~g~~~~~~~~l~V~  147 (147)
                      |.|.|..|.. +..+.|.|+
T Consensus       363 C~a~N~~G~~-~~~~~l~V~  381 (382)
T 1cs6_A          363 CVAENKHGTV-YASAELTVQ  381 (382)
T ss_dssp             EEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEeCCCeE-EEEEEEEEe
Confidence            9999999988 778888874

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.81  E-value=5.7e-19  Score=105.24  Aligned_cols=130  Identities=18%  Similarity=0.314  Sum_probs=92.7

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCC-CCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      +|.+...+.  ...+..|+.+.|.|.+.+.+ .+.+.|++++..+...     ...+.+.+++..|+|.|.|.+.+....
T Consensus         4 ~p~i~~~p~--~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~-----~~~~~~~~~~~~d~G~Y~C~~~~~~~s   76 (170)
T 3ry4_A            4 KAVLKLEPP--WINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-----TQPSYRFKANNNDSGEYTCQTGQTSLS   76 (170)
T ss_dssp             BCEEEEESC--CSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTC-----CSSEEEEECCGGGCEEEEEEETTSBCC
T ss_pred             CCEEEeCCC--CeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccC-----ccceEEEecccccCeEEEEEEeCCCce
Confidence            345555555  44789999999999988876 5689999998776542     344667889999999999999864332


Q ss_pred             ceEEeEEEEEeee-----------------------------ecCCCCcc-------ccCCceEEeecCCCCCeEEEEEe
Q psy7616          87 PVTVDMTLEVLCK-----------------------------ILPSGEKS-------LEGFSITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus        87 ~~~~~~~l~v~~~-----------------------------~~~~~~~~-------~~~~~~~l~~~~~~d~G~Y~C~a  130 (147)
                         ..+.+.+..+                             +.+.|..+       ..+..+.+.+++.+|+|.|+|.|
T Consensus        77 ---~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  153 (170)
T 3ry4_A           77 ---DPVHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTG  153 (170)
T ss_dssp             ---CCEEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESSCCEEEESSCCGGGCEEEEEEE
T ss_pred             ---EeEEEEEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccCCCCeEEEEeccccCCEEEEEEE
Confidence               2233333321                             22223222       23456777899999999999999


Q ss_pred             ecCCCCCcCeeeEEEEC
Q psy7616         131 TNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       131 ~n~~g~~~~~~~~l~V~  147 (147)
                      .|..|...+..+.|.|.
T Consensus       154 ~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          154 NIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             EETTEEEECCCEEEEEC
T ss_pred             EeCcCccccccEEEEEC
Confidence            99999756888888874

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.81  E-value=2.1e-19  Score=107.91  Aligned_cols=131  Identities=20%  Similarity=0.264  Sum_probs=92.4

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      ..+|.+...+.  ...+..|+.+.|.|.+.+.+.+ .+.|++++..+..     ....|.|.+++..|+|.|.|.+.+..
T Consensus         2 ~~~P~i~~~p~--~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~~~~~~   74 (176)
T 1f2q_A            2 PQKPKVSLNPP--WNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-----TNSSLNIVNAKFEDSGEYKCQHQQVN   74 (176)
T ss_dssp             --CCCCEEESS--CSEEETTCCEEEECCTTCC----CCEEEETTEECSC-----CSSEEEECSCCGGGCEEEEEECTTSS
T ss_pred             CCCCEEEcCCC--CcceecCCcEEEEEeCCCCCCcceEEEEECCeECCC-----CceEEEEeccceecCEEEEEEcCCcc
Confidence            35677877776  4588999999999999887765 6999999876643     35678999999999999999998754


Q ss_pred             CCceEEeEEEEEeee-----------------------------ecCCCCcc-------ccCCceEEeecCCCCCeEEEE
Q psy7616          85 GDPVTVDMTLEVLCK-----------------------------ILPSGEKS-------LEGFSITLEKVDRHQAGVYQC  128 (147)
Q Consensus        85 ~~~~~~~~~l~v~~~-----------------------------~~~~~~~~-------~~~~~~~l~~~~~~d~G~Y~C  128 (147)
                      +.   ..+.+.+..+                             +.+.|..+       ..+..+.+.+++.+|+|.|+|
T Consensus        75 ~s---~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~Y~C  151 (176)
T 1f2q_A           75 ES---EPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYC  151 (176)
T ss_dssp             CC---CCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEEEEE
T ss_pred             cc---ccEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcccCEEEEE
Confidence            33   2222333211                             12233332       235567789999999999999


Q ss_pred             EeecCCCCCcCeeeEEEE
Q psy7616         129 TATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       129 ~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.|..+...+..+.|.|
T Consensus       152 ~a~n~~~~~~s~~~~l~V  169 (176)
T 1f2q_A          152 TGKVWQLDYESEPLNITV  169 (176)
T ss_dssp             EEEETTEEEECCCEEEEE
T ss_pred             EEEeCCcceEecCEEEEE
Confidence            999986555566777776

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.81  E-value=8.8e-19  Score=107.19  Aligned_cols=128  Identities=16%  Similarity=0.206  Sum_probs=85.5

Q ss_pred             CCceEEeeCCeEEEEEeecCCCC-----CceEEEecCCCC-CCCce--ee------eccceEEEeecCCCCeEEEEEeec
Q psy7616          17 NGQLTVRKGGTITLECKASGNPV-----PSIIWSKKDSSL-PSGEK--SL------EGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        17 ~~~~~~~~g~~~~l~C~~~~~~~-----~~v~w~~~~~~~-~~~~~--~~------~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      ...+.+..|+.+.|.|.+.+.+.     +.+.|++.+... ....+  ..      ....|.|.+++..|+|.|.|.+.+
T Consensus         9 ~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   88 (202)
T 3bp6_B            9 KEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVIC   88 (202)
T ss_dssp             CSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEe
Confidence            33568889999999999988765     789999943332 21111  11      235799999999999999999988


Q ss_pred             CCCCceEEeEEEEEeee----------------------------ecCCCCcc-----------ccC--CceEEeecCCC
Q psy7616          83 GVGDPVTVDMTLEVLCK----------------------------ILPSGEKS-----------LEG--FSITLEKVDRH  121 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~~~----------------------------~~~~~~~~-----------~~~--~~~~l~~~~~~  121 (147)
                      ..+.. ...+.|.|..+                            |.+.|..+           ..|  ..+.+.+++.+
T Consensus        89 ~~~~~-~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~i~~v~~~  167 (202)
T 3bp6_B           89 GAAWD-YKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQNVSVPANTSHIRTPEGLYQVTSVLRLKPQ  167 (202)
T ss_dssp             TTEEE-EEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEEEEBSCCEEEETTCCSCCEEEEEECTTSCEEEEEEEEECCC
T ss_pred             CCCcc-eEEEEEEecCCCCcccEEEEecCCCCeEEEEEEccccCCceEEEEeCCCCccCceeeCCCCCEEEEEEEEEEcC
Confidence            76543 45555555432                            12223222           001  11233588899


Q ss_pred             CCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         122 QAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       122 d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      |.|.|+|.|.|..|.. +..+.|.|
T Consensus       168 d~G~Y~C~a~N~~g~~-~~~~~l~v  191 (202)
T 3bp6_B          168 PSRNFSCMFWNAHMKE-LTSAIIDP  191 (202)
T ss_dssp             TTCCEEEEEEETTTTE-EEEEEECC
T ss_pred             CCCEEEEEEEcCCccc-ccEEEEEe
Confidence            9999999999999987 66666654

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.80  E-value=7e-19  Score=107.31  Aligned_cols=136  Identities=15%  Similarity=0.204  Sum_probs=92.9

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce----eeeccceEEEeecCCCCeEEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+|.+...|..   .+..|++++|.|.+.+.+. .+.|++++..+.....    ......|.|.+++..|+|.|.|.+.+
T Consensus         4 ~~P~i~~~p~~---~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (196)
T 2d3v_A            4 SKATLWAEPGS---VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYS   79 (196)
T ss_dssp             CBCEEEEESCS---EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeCCCC---cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeC
Confidence            56788777652   7889999999999887554 8999999887643211    22455799999999999999999987


Q ss_pred             CCCCc-eEEeEEEEEee---ee---------------------------cCCCCcc---c-----------cC---CceE
Q psy7616          83 GVGDP-VTVDMTLEVLC---KI---------------------------LPSGEKS---L-----------EG---FSIT  114 (147)
Q Consensus        83 ~~~~~-~~~~~~l~v~~---~~---------------------------~~~~~~~---~-----------~~---~~~~  114 (147)
                      ..+.. .+..+.+.+..   +|                           .+.|.++   .           .+   ..|.
T Consensus        80 ~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~  159 (196)
T 2d3v_A           80 PAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFP  159 (196)
T ss_dssp             TTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCCSEEEEEEC---CCEEEEECEECTTSCEEEEEE
T ss_pred             CCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCCCEEEEEccCCcccccccccccccCCCceeEEE
Confidence            64321 12334444432   11                           1122221   0           01   4566


Q ss_pred             EeecCCCCCeEEEEEeecCCC----CCcCeeeEEEE
Q psy7616         115 LEKVDRHQAGVYQCTATNGVG----DPVTVDMTLEV  146 (147)
Q Consensus       115 l~~~~~~d~G~Y~C~a~n~~g----~~~~~~~~l~V  146 (147)
                      |.+++.+|+|.|+|.|.|..+    +..+..+.|.|
T Consensus       160 I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  195 (196)
T 2d3v_A          160 VGPVTPSHRWMLRCYGSRRHILQVWSEPSDLLEIPV  195 (196)
T ss_dssp             CCCCBTTBCEEEEEEEEETTEEEEECCCCCCEEECC
T ss_pred             eeecCcccCeeEEEEEEccCCCCccCCCCccEEEEe
Confidence            789999999999999999864    34466777765

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.80  E-value=9.9e-19  Score=113.07  Aligned_cols=131  Identities=29%  Similarity=0.508  Sum_probs=89.8

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee----e--ccceEEEeecC-CCCeEEEE
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL----E--GFSITLEKVDR-HQAGVYQC   78 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~----~--~~~l~~~~~~~-~~~g~y~C   78 (147)
                      ..+|.|...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+.......    .  ...|.|.++.. .|+|.|.|
T Consensus         4 ~~~P~~~~~p~--~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C   81 (304)
T 2yd9_A            4 EEPPRFIKEPK--DQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYEC   81 (304)
T ss_dssp             CCCCEEEECCC--CEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred             ccCCeeeecCC--ceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence            35888887776  5688999999999999988889999999988775433211    1  24689999997 99999999


Q ss_pred             EeecCCCCceEEeEEEEEeeee------------------------------------cCCCCcc---------------
Q psy7616          79 TATNGVGDPVTVDMTLEVLCKI------------------------------------LPSGEKS---------------  107 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~l~v~~~~------------------------------------~~~~~~~---------------  107 (147)
                      .+.+..+.. ...+.|.|..++                                    .+.|..+               
T Consensus        82 ~a~n~~g~~-~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~  160 (304)
T 2yd9_A           82 VAQNSVGEI-TVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ  160 (304)
T ss_dssp             EEECSSCEE-CCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE
T ss_pred             EEECCCCeE-EEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe
Confidence            999877652 445555554321                                    1122211               


Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVT  139 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~  139 (147)
                      .....|.+.+++.+|+|.|+|.|.|..|...+
T Consensus       161 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  192 (304)
T 2yd9_A          161 LRSGALQIESSEETDQGKYECVATNSAGVRYS  192 (304)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             CCCeEEEEccCCcccCEEEEEEEEeCCCCEEe
Confidence            11235777899999999999999999987633

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.80  E-value=1.8e-18  Score=106.18  Aligned_cols=128  Identities=24%  Similarity=0.392  Sum_probs=92.9

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCC-------------CCceeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP-------------SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++++..+.             ..........|.|.+++..|+|.|.|.+.+..+
T Consensus        10 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~v~~~D~G~Y~C~~~~~~g   89 (212)
T 1f97_A           10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGG   89 (212)
T ss_dssp             EEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTS
T ss_pred             CeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeeceeEEEcccCcccCeEEEEEEEccCC
Confidence            6688999999999999888888999999876621             111223346799999999999999999998755


Q ss_pred             Cc-eEEeEEEEEeeeecC------------------------------CCCccc-----------------------cCC
Q psy7616          86 DP-VTVDMTLEVLCKILP------------------------------SGEKSL-----------------------EGF  111 (147)
Q Consensus        86 ~~-~~~~~~l~v~~~~~~------------------------------~~~~~~-----------------------~~~  111 (147)
                      .. ....+.+.+..+|.+                              .|..+.                       ...
T Consensus        90 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  169 (212)
T 1f97_A           90 QNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSG  169 (212)
T ss_dssp             SSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTC
T ss_pred             CcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCc
Confidence            22 244555555443322                              221111                       134


Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. .+..+.|.|
T Consensus       170 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V  205 (212)
T 1f97_A          170 DLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA  205 (212)
T ss_dssp             CEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEE
T ss_pred             eEEEEecChhhCcEEEEEEccccCCccccceEEEEE
Confidence            57778999999999999999999987 566777776

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.80  E-value=5e-19  Score=108.75  Aligned_cols=138  Identities=36%  Similarity=0.533  Sum_probs=94.1

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-------eeeeccc-----eEEEeecCCCCe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-------KSLEGFS-----ITLEKVDRHQAG   74 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-------~~~~~~~-----l~~~~~~~~~~g   74 (147)
                      .||.+...+.  ...+..|+.+.|.|.+.+.+.+.+.|++++..+....       .......     +.+.++...|+|
T Consensus         8 ~pp~i~~~p~--~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G   85 (212)
T 2v9r_A            8 FPPRIVEHPS--DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEG   85 (212)
T ss_dssp             EEEEEEECCC--CEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCE
T ss_pred             CCcceecCCC--ceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCe
Confidence            5778877665  5689999999999999888888999999987664321       1112222     334556889999


Q ss_pred             EEEEEeecCCCCceEEeEEEEEeeee-------------------------------cCCCCcc------------ccCC
Q psy7616          75 VYQCTATNGVGDPVTVDMTLEVLCKI-------------------------------LPSGEKS------------LEGF  111 (147)
Q Consensus        75 ~y~C~~~~~~~~~~~~~~~l~v~~~~-------------------------------~~~~~~~------------~~~~  111 (147)
                      .|.|.+.+..+......+.+.+...+                               .+.|..+            ..+.
T Consensus        86 ~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~  165 (212)
T 2v9r_A           86 VYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG  165 (212)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETT
T ss_pred             EEEEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCC
Confidence            99999998765432334444443321                               1112111            1223


Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus       166 ~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V  200 (212)
T 2v9r_A          166 KLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV  200 (212)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEeeCCHhhCeeEEEEEecccCceecceEEEEE
Confidence            56678899999999999999999986455577776

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.80  E-value=3.5e-18  Score=113.71  Aligned_cols=134  Identities=24%  Similarity=0.453  Sum_probs=96.8

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEec--CCCCCC------Ccee-e---eccceEEEeecCCCCeE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK--DSSLPS------GEKS-L---EGFSITLEKVDRHQAGV   75 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~~~------~~~~-~---~~~~l~~~~~~~~~~g~   75 (147)
                      +|.+.. +.  ...+..|+.+.|.|.+.+.|.+.+.|+++  +..+..      .... .   ....|.|.+++..|+|.
T Consensus         1 ~P~i~~-~~--~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   77 (389)
T 2jll_A            1 QPHIIQ-LK--NETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGR   77 (389)
T ss_dssp             CCEEEE-CC--CEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEE
T ss_pred             CCeEEe-cC--ceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEE
Confidence            456655 33  44778899999999999999999999998  654432      1111 1   24579999999999999


Q ss_pred             EEEEeecCCCCceEEeEEEEEeeeecCCC-----------------------------Ccc----c-------------c
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLCKILPSG-----------------------------EKS----L-------------E  109 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~~~~~~~-----------------------------~~~----~-------------~  109 (147)
                      |.|.+.|..+.. +..+.|.|..+|.+..                             ..+    .             .
T Consensus        78 Y~C~a~n~~g~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~  156 (389)
T 2jll_A           78 YDCEAASRIGGH-QKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGR  156 (389)
T ss_dssp             EEEEEECSSCEE-EEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSS
T ss_pred             EEEEEEeCCCCc-ceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCC
Confidence            999999987764 6667777766554322                             111    0             0


Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       157 ~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v  192 (389)
T 2jll_A          157 KMILEIAPTSDNDFGRYNCTATNHIGTR-FQEYILAL  192 (389)
T ss_dssp             CEEEEECCCSTTSSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEEcCCCcE-EEEEEEEe
Confidence            1136668899999999999999999987 55666554

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.80  E-value=1.5e-18  Score=111.30  Aligned_cols=140  Identities=18%  Similarity=0.329  Sum_probs=96.5

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC---c-eeeeccceEEEeecCCCCeEEEEEe
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG---E-KSLEGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~---~-~~~~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      +..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+...   . .......|.|.++...|+|.|.|.+
T Consensus        95 v~~~~~~~~~~~--~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~  172 (291)
T 2wim_A           95 IYQKLTFREVVS--PQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEG  172 (291)
T ss_dssp             EECCCBCCSCCC--SEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETTCCGGGCEEEEEEE
T ss_pred             ecCCcceEeCCC--ChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEecchhhCEEEEEEE
Confidence            334555544443  457889999999999998888999999998766421   1 1234567999999999999999999


Q ss_pred             ecCCCCc-eEEeEEEEEeeeecCCCC-------------------------------cc-------------ccCCceEE
Q psy7616          81 TNGVGDP-VTVDMTLEVLCKILPSGE-------------------------------KS-------------LEGFSITL  115 (147)
Q Consensus        81 ~~~~~~~-~~~~~~l~v~~~~~~~~~-------------------------------~~-------------~~~~~~~l  115 (147)
                      .+..+.. ....+.+.+..+|.+...                               .+             ..+..|.+
T Consensus       173 ~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~L~i  252 (291)
T 2wim_A          173 RVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTV  252 (291)
T ss_dssp             EETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCEEEE
T ss_pred             EECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccEEEE
Confidence            8876443 234445555555443221                               11             01234777


Q ss_pred             eecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         116 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       116 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       253 ~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~  283 (291)
T 2wim_A          253 RNIINSDGGPYVCRATNKAGED-EKQAFLQVF  283 (291)
T ss_dssp             ESCCSTTCEEEEEEEEETTEEE-EEEEEEEC-
T ss_pred             eeCCcccCEEEEEEEEECCCce-eeeEEEEEE
Confidence            8999999999999999999988 778887763

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.80  E-value=1.7e-18  Score=106.88  Aligned_cols=138  Identities=28%  Similarity=0.451  Sum_probs=93.8

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----ee-eeccc----eEEEeecCCCCeEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KS-LEGFS----ITLEKVDRHQAGVYQ   77 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~-~~~~~----l~~~~~~~~~~g~y~   77 (147)
                      .+|.+...+.  .+.+..|+.+.|.|.+.+.+.+.+.|++++..+....    .. .....    +.|.+++..|+|.|.
T Consensus         8 ~~P~i~~~p~--~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~   85 (217)
T 2vr9_A            8 QSPRIIEHPT--DLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYW   85 (217)
T ss_dssp             CCCEEEECCC--CEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEE
T ss_pred             CCCEEecCCC--ceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEE
Confidence            5778877765  5689999999999999888888999999987765321    11 11222    256788899999999


Q ss_pred             EEeecCCCCceEEeEEEEEeee-e------------------------------cCCCCcc----c--------------
Q psy7616          78 CTATNGVGDPVTVDMTLEVLCK-I------------------------------LPSGEKS----L--------------  108 (147)
Q Consensus        78 C~~~~~~~~~~~~~~~l~v~~~-~------------------------------~~~~~~~----~--------------  108 (147)
                      |.+.+..+........+.+... |                              .+.|..+    .              
T Consensus        86 C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~  165 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR  165 (217)
T ss_dssp             EEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEE
T ss_pred             EEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEE
Confidence            9999876543222334444321 1                              1112211    0              


Q ss_pred             --cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 --EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 --~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                        .+..|.+.+++.+|+|.|+|.|.|..|...+....|.+
T Consensus       166 ~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~lv~  205 (217)
T 2vr9_A          166 IVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIV  205 (217)
T ss_dssp             EETTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ecCCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEEEE
Confidence              12357778999999999999999999988444444443

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.80  E-value=3.5e-18  Score=104.81  Aligned_cols=127  Identities=16%  Similarity=0.217  Sum_probs=91.5

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC---------------------ceeeeccceEEEeecCCCCeEEEEE
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG---------------------EKSLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~---------------------~~~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+..|+++.|.|...+.+.+.+.|++++......                     .....+..|.|.+++..|+|.|.|.
T Consensus        10 ~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~   89 (208)
T 3r4d_A           10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLD   89 (208)
T ss_dssp             EEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             eeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCCeEEEccccccCCeEEEEE
Confidence            7889999999999777788899999875432110                     1112235799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeeee-----------------------------cCCCCcc-------------ccCCceEEee
Q psy7616          80 ATNGVGDPVTVDMTLEVLCKI-----------------------------LPSGEKS-------------LEGFSITLEK  117 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~-----------------------------~~~~~~~-------------~~~~~~~l~~  117 (147)
                      +.+..+......+.+.|..++                             .+.|..+             ..+..|.+.+
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~pp~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~  169 (208)
T 3r4d_A           90 MTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDP  169 (208)
T ss_dssp             EECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTTCEEEEEETTEECCCCSSEEEETTTTEEEESS
T ss_pred             EEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCCCceEEEECCEeCCCCCCeEEcCCCCEEEEec
Confidence            998754333455555554321                             1122211             1235577789


Q ss_pred             cCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         118 VDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       118 ~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ++.+|+|.|+|.|.|..|...+..++|.|.
T Consensus       170 v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~  199 (208)
T 3r4d_A          170 IKREDAGEYQCEISNPVSVRRSNSIKLDII  199 (208)
T ss_dssp             CCGGGCEEEEEEEECTTCCEECCCEEECCC
T ss_pred             cCHHhCeEEEEEEecCCCcccCCceeeeEE
Confidence            999999999999999999998888988763

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.80  E-value=2.2e-18  Score=114.87  Aligned_cols=127  Identities=21%  Similarity=0.385  Sum_probs=96.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc--ee-----eeccceEEEeecCCCCeEEEEEeecCCCCceEEe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--KS-----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD   91 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   91 (147)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+....  ..     .....|.|.++...|+|.|.|.+.|..+......
T Consensus       221 ~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  300 (395)
T 1bih_A          221 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS  300 (395)
T ss_dssp             SEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEE
T ss_pred             ceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEE
Confidence            5578899999999999988999999999987764321  11     1223699999999999999999999887754446


Q ss_pred             EEEEEeeeecCC------------------------------CCcc----------ccCCceEEeecCCCCCeEEEEEee
Q psy7616          92 MTLEVLCKILPS------------------------------GEKS----------LEGFSITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus        92 ~~l~v~~~~~~~------------------------------~~~~----------~~~~~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      +.|.|..+|.+.                              |..+          ..+..|.+.+++.+|+|.|+|.|.
T Consensus       301 ~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  380 (395)
T 1bih_A          301 LKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRAT  380 (395)
T ss_dssp             EEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEE
T ss_pred             EEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEECCEECCCCceEEECCEEEEeeCCcccCEEEEEEEE
Confidence            666665544332                              2211          112356778899999999999999


Q ss_pred             cCCCCCcCeeeEEEE
Q psy7616         132 NGVGDPVTVDMTLEV  146 (147)
Q Consensus       132 n~~g~~~~~~~~l~V  146 (147)
                      |..|.. +..+.|.|
T Consensus       381 N~~G~~-~~~~~l~V  394 (395)
T 1bih_A          381 NEHGDK-YFETLVQV  394 (395)
T ss_dssp             ETTEEE-EEEEEEEE
T ss_pred             ccCCCc-eEEEEEEE
Confidence            999988 77888877

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.79  E-value=1.9e-18  Score=107.52  Aligned_cols=134  Identities=11%  Similarity=0.097  Sum_probs=81.6

Q ss_pred             eEEcCCCCceEEeeCCeEEEEEeecCCCCC---ceEEEecCCCCCC------------------Cc-e------eeeccc
Q psy7616          11 IRTSPSNGQLTVRKGGTITLECKASGNPVP---SIIWSKKDSSLPS------------------GE-K------SLEGFS   62 (147)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~w~~~~~~~~~------------------~~-~------~~~~~~   62 (147)
                      |.+..+.+.+.+..|++++|.|.+.+.+.+   .+.|++++....-                  .+ .      ......
T Consensus         5 f~V~~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~   84 (226)
T 4f80_A            5 FSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAA   84 (226)
T ss_dssp             CEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEE
T ss_pred             EEEECCCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEE
Confidence            344444445788999999999998765443   5999997643210                  00 0      012346


Q ss_pred             eEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe----------------------------eeecCCCCcc-------
Q psy7616          63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL----------------------------CKILPSGEKS-------  107 (147)
Q Consensus        63 l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~----------------------------~~~~~~~~~~-------  107 (147)
                      |.|.+++..|+|.|.|.+.+..+.. ...+.+.+.                            .+|.+.|.+.       
T Consensus        85 L~I~~v~~~D~G~Y~C~a~n~~~~~-~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~  163 (226)
T 4f80_A           85 LRIHNVTASDSGKYLCYFQDGDFYE-KALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPT  163 (226)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCC
T ss_pred             EEEeeCchHHCeeEEEEEECCCcEE-EEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCC
Confidence            9999999999999999999865442 222222221                            1234455432       


Q ss_pred             -------ccCCc---eEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 -------LEGFS---ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 -------~~~~~---~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                             ...+.   +.+..++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       164 ~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~-~~~~~v~v  211 (226)
T 4f80_A          164 VEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGL-EKTASISI  211 (226)
T ss_dssp             EECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTE-EEEEEECC
T ss_pred             CceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCe-EEEEEEEE
Confidence                   01111   1234678899999999999999987 66777765

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.79  E-value=3.6e-18  Score=104.30  Aligned_cols=136  Identities=15%  Similarity=0.193  Sum_probs=92.5

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEeecCCCCeEEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+|.+...|..   .+..|+.++|.|.+.+.+. .+.|++++..+....    .......|.|.+++..|+|.|.|.+.+
T Consensus         4 ~~P~i~~~p~~---~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   79 (198)
T 1ugn_A            4 PKPTLWAEPGS---VITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   79 (198)
T ss_dssp             CCCEEEEESCS---EEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEeccCCC---cccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCcccEEEECCCCHHHCeEEEEEEEC
Confidence            46777776642   7889999999999887654 799999987763111    123456799999999999999999988


Q ss_pred             CC-CC-ceEEeEEEEEee---ee---------------------------cCCCCcc---c-----------c---CCce
Q psy7616          83 GV-GD-PVTVDMTLEVLC---KI---------------------------LPSGEKS---L-----------E---GFSI  113 (147)
Q Consensus        83 ~~-~~-~~~~~~~l~v~~---~~---------------------------~~~~~~~---~-----------~---~~~~  113 (147)
                      .. +. ..+..+.+.|..   .|                           .+.|.++   .           .   ...|
T Consensus        80 ~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L  159 (198)
T 1ugn_A           80 DTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIF  159 (198)
T ss_dssp             TTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSCCSEEEEEEC------CEEEC------CCEEEE
T ss_pred             CCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCCCcEEEEEECCCccCCccccccccCCCcceeEE
Confidence            65 31 113334444433   11                           1112111   0           0   1456


Q ss_pred             EEeecCCCCCeEEEEEeecCCCCC----cCeeeEEEE
Q psy7616         114 TLEKVDRHQAGVYQCTATNGVGDP----VTVDMTLEV  146 (147)
Q Consensus       114 ~l~~~~~~d~G~Y~C~a~n~~g~~----~~~~~~l~V  146 (147)
                      .|.+++.+|+|.|+|.|.|..+..    .+..+.|.|
T Consensus       160 ~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  196 (198)
T 1ugn_A          160 SVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLV  196 (198)
T ss_dssp             EECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             EecccCcccCeEEEEEEEeCCCCccccCcCceEEEEe
Confidence            778999999999999999987622    366777776

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.79  E-value=1.4e-18  Score=115.64  Aligned_cols=125  Identities=25%  Similarity=0.389  Sum_probs=94.2

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCC-------CceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS-------GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~-------~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++.....       .........|.|.++...|+|.|.|.+.|..+.. +..+
T Consensus       222 ~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~  300 (388)
T 2v5m_A          222 LELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVET  300 (388)
T ss_dssp             EEEETTSCEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEE-EEEE
T ss_pred             eEEeeCCcEEEEEECCCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCce-eEEE
Confidence            4678899999999998889999999997543321       1112345679999999999999999999987764 5566


Q ss_pred             EEEEeeeecC-----------------------------CCCcc-----ccCCceEEeecCCCCCeEEEEEeecCCCCCc
Q psy7616          93 TLEVLCKILP-----------------------------SGEKS-----LEGFSITLEKVDRHQAGVYQCTATNGVGDPV  138 (147)
Q Consensus        93 ~l~v~~~~~~-----------------------------~~~~~-----~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~  138 (147)
                      .|.|..+|.+                             .|..+     ..+..|.+.+++.+|+|.|+|.|.|..|.. 
T Consensus       301 ~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-  379 (388)
T 2v5m_A          301 VLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESA-  379 (388)
T ss_dssp             EEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEECSSCEE-
T ss_pred             EEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECCEECccCCCEEEEecCChhhCEEEEEEEEcCCCcE-
Confidence            6666554332                             22222     223457778999999999999999999988 


Q ss_pred             CeeeEEEE
Q psy7616         139 TVDMTLEV  146 (147)
Q Consensus       139 ~~~~~l~V  146 (147)
                      +..+.|.|
T Consensus       380 ~~~~~l~V  387 (388)
T 2v5m_A          380 EASAELKL  387 (388)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEe
Confidence            77888876

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.79  E-value=1.8e-18  Score=115.53  Aligned_cols=126  Identities=25%  Similarity=0.421  Sum_probs=96.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc---eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE---KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+....   .......|.|.++...|+|.|.|.+.+..+.. +..+.+.
T Consensus       230 ~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~  308 (403)
T 3laf_A          230 NVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENI-SASAELT  308 (403)
T ss_dssp             CEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEE
T ss_pred             ceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCce-EEEEEEE
Confidence            5578899999999999988889999999987664322   12345679999999999999999999876653 5666666


Q ss_pred             EeeeecCC-----------------------------CCcc------------ccCCceEEeecCCCCCeEEEEEeecCC
Q psy7616          96 VLCKILPS-----------------------------GEKS------------LEGFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus        96 v~~~~~~~-----------------------------~~~~------------~~~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      +..+|.+.                             |..+            ..+..+.+.+++.+|+|.|+|.|.|..
T Consensus       309 V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  388 (403)
T 3laf_A          309 VLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGSNLRILGVVKSDEGFYQCVAENEA  388 (403)
T ss_dssp             EEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEETT
T ss_pred             EECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCEECCCCCcEEEecCccEEEeccccccCEEEEEEEEcCC
Confidence            65544332                             2211            123346778899999999999999999


Q ss_pred             CCCcCeeeEEEE
Q psy7616         135 GDPVTVDMTLEV  146 (147)
Q Consensus       135 g~~~~~~~~l~V  146 (147)
                      |.. +..+.|.|
T Consensus       389 G~~-~~~~~l~V  399 (403)
T 3laf_A          389 GNA-QSSAQLIV  399 (403)
T ss_dssp             EEE-EEEEEEEC
T ss_pred             ceE-EEEEEEEE
Confidence            988 77888876

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.79  E-value=2.4e-18  Score=111.25  Aligned_cols=135  Identities=27%  Similarity=0.364  Sum_probs=91.4

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-----eeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-----KSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      |.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+....     .......|.|.+++..|+|.|.|.+.+.
T Consensus       109 p~i~~~~~--~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  186 (304)
T 2yd9_A          109 PNIDMGPQ--LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYECVATNS  186 (304)
T ss_dssp             CEEEECCC--CEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEET
T ss_pred             CeeecCCc--cEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeC
Confidence            55555554  4578899999999999998999999999987765321     1234557999999999999999999987


Q ss_pred             CCCceEEeEEEEEe---eeecC-----------------------------CCCcc---------ccCCceEEeecCCCC
Q psy7616          84 VGDPVTVDMTLEVL---CKILP-----------------------------SGEKS---------LEGFSITLEKVDRHQ  122 (147)
Q Consensus        84 ~~~~~~~~~~l~v~---~~~~~-----------------------------~~~~~---------~~~~~~~l~~~~~~d  122 (147)
                      .+........+.+.   .+|.+                             .|..+         .......|.....+|
T Consensus       187 ~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~i~~~~d  266 (304)
T 2yd9_A          187 AGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKD  266 (304)
T ss_dssp             TEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEEECSCCS
T ss_pred             CCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEEEccccc
Confidence            66532221233331   22222                             22211         001122344455689


Q ss_pred             CeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         123 AGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       123 ~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +|.|+|.|.|..|.. +..+.|.|
T Consensus       267 ~G~Y~C~a~N~~G~~-~~~~~l~V  289 (304)
T 2yd9_A          267 SANYTCVAMSSLGVI-EAVAQITV  289 (304)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEEC-
T ss_pred             CEEEEEEEEeCCCcE-EEEEEEEE
Confidence            999999999999988 77788776

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.79  E-value=1e-18  Score=106.52  Aligned_cols=127  Identities=17%  Similarity=0.221  Sum_probs=90.8

Q ss_pred             ceEEeeCCeEEEEEe-ecCCCC-CceEEEecCCCCC---CCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceE--
Q psy7616          19 QLTVRKGGTITLECK-ASGNPV-PSIIWSKKDSSLP---SGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVT--   89 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~-~~~~~~-~~v~w~~~~~~~~---~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~--   89 (147)
                      .+.+..|+.+.|.|. ..+.+. +.+.|++++..+.   ....  ......|.|.+++..|+|.|.|.+.+..+....  
T Consensus        17 ~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~   96 (201)
T 3s97_C           17 EVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSPSITKSVFS   96 (201)
T ss_dssp             CEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTCCEEESSCCGGGCEEEEEEEEEGGGTEEEEC
T ss_pred             eEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCCeEEECcCCcccCeEEEEEEEecCCCcchhh
Confidence            568999999999999 777787 8999999987763   1111  224567999999999999999999874432211  


Q ss_pred             EeEEEEE------------------------------------eeeecCCCCcc-----------ccCCceEEeecCCCC
Q psy7616          90 VDMTLEV------------------------------------LCKILPSGEKS-----------LEGFSITLEKVDRHQ  122 (147)
Q Consensus        90 ~~~~l~v------------------------------------~~~~~~~~~~~-----------~~~~~~~l~~~~~~d  122 (147)
                      ..+.+.+                                    ..+|.+.|..+           ..+..+.+.+++.+|
T Consensus        97 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  176 (201)
T 3s97_C           97 KFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLED  176 (201)
T ss_dssp             CCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCCGGG
T ss_pred             cccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCChhh
Confidence            1111111                                    11233344433           234578889999999


Q ss_pred             CeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         123 AGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       123 ~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +|.|+|.|.|..|.. +..+.|.|
T Consensus       177 ~G~Y~C~a~n~~g~~-~~~~~l~V  199 (201)
T 3s97_C          177 EGIYECEAENIRGKD-KHQARIYV  199 (201)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             CEEEEEEEEecCCce-eeeEEEEE
Confidence            999999999999988 77888876

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.79  E-value=9.8e-19  Score=108.69  Aligned_cols=137  Identities=23%  Similarity=0.391  Sum_probs=97.2

Q ss_pred             CCceEEcC--CCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce------eeeccceEEEeecCCCCeEEEEE
Q psy7616           8 PPSIRTSP--SNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         8 ~p~~~~~~--~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      +|.+...+  ......+..|+.+.|.|.+.+.+.+.+.|++++..+.....      ......|.|.+++..|+|.|.|.
T Consensus        15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   94 (231)
T 3ojm_B           15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV   94 (231)
T ss_dssp             EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEE
T ss_pred             CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEE
Confidence            45554333  11256889999999999998888889999999877653321      12344699999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeee----------------------------------ecCCCCc----c--------------
Q psy7616          80 ATNGVGDPVTVDMTLEVLCK----------------------------------ILPSGEK----S--------------  107 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~----------------------------------~~~~~~~----~--------------  107 (147)
                      +.+..+.. ...+.+.+...                                  |.+.|..    +              
T Consensus        95 ~~n~~~~~-~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~  173 (231)
T 3ojm_B           95 VENEYGSI-NHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV  173 (231)
T ss_dssp             EEETTEEE-EEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEE
T ss_pred             EecccCcc-cccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeE
Confidence            98876543 44555555421                                  1222322    0              


Q ss_pred             --------ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 --------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 --------~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                              ..+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       174 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  219 (231)
T 3ojm_B          174 LKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQA-NQSAWLTV  219 (231)
T ss_dssp             EEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             ecccccccCCccEEEEecCCHHHCeEEEEEEEeccceE-eeEEEEEE
Confidence                    011237778999999999999999999988 77888876

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.78  E-value=1.3e-18  Score=106.94  Aligned_cols=127  Identities=26%  Similarity=0.392  Sum_probs=90.4

Q ss_pred             ceEEeeCCeEEEEEeecCCC----CCceEEEecCCC----------------CC------CCce-ee------eccceEE
Q psy7616          19 QLTVRKGGTITLECKASGNP----VPSIIWSKKDSS----------------LP------SGEK-SL------EGFSITL   65 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~~~~----------------~~------~~~~-~~------~~~~l~~   65 (147)
                      .+.+..|+.+.|.|.+.+.+    .+.+.|++.+..                ..      .... ..      ....|.|
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i   88 (214)
T 3jz7_A            9 RIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASINV   88 (214)
T ss_dssp             EEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCEEE
T ss_pred             eEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccEEE
Confidence            56788999999999987765    468999984321                11      0011 11      2456999


Q ss_pred             EeecCCCCeEEEEEeecCCCCceEEeEEEEEeeeecC------------------------------CCCcc--------
Q psy7616          66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP------------------------------SGEKS--------  107 (147)
Q Consensus        66 ~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~~~~------------------------------~~~~~--------  107 (147)
                      .+++..|+|.|.|.+.+..+.. ...+.|.|..+|.+                              .|...        
T Consensus        89 ~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~  167 (214)
T 3jz7_A           89 TNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPT  167 (214)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCG
T ss_pred             ccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCc
Confidence            9999999999999999876543 55566666543332                              22221        


Q ss_pred             -----ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 -----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 -----~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                           ..+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       168 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  211 (214)
T 3jz7_A          168 PWLAEMTSPVISVKNASSEYSGTYSCTVQNRVGSD-QCMLRLDVV  211 (214)
T ss_dssp             GGGGGTTSSEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEECCB
T ss_pred             cceeccCCCEEEEecCCHHHCEEEEEEEEcCCCcE-EEEEEEEEe
Confidence                 123467789999999999999999999988 778888763

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.78  E-value=3.3e-18  Score=107.10  Aligned_cols=126  Identities=29%  Similarity=0.461  Sum_probs=92.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce------eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++++..+.....      ......|.|.+++..|+|.|.|.+.+..+.. ...+
T Consensus        24 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~-~~~~  102 (241)
T 3grw_A           24 LLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTY  102 (241)
T ss_dssp             EEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEEE
T ss_pred             ceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccceEEEEEeCCcccCEEEEEEEeecCCce-EEEE
Confidence            56888999999999998888889999999877643221      2234579999999999999999998865543 4444


Q ss_pred             EEEEee----------------------------------eecCCCCc----c-----c------------------cCC
Q psy7616          93 TLEVLC----------------------------------KILPSGEK----S-----L------------------EGF  111 (147)
Q Consensus        93 ~l~v~~----------------------------------~~~~~~~~----~-----~------------------~~~  111 (147)
                      .+.+..                                  .|.+.|..    +     .                  ...
T Consensus       103 ~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (241)
T 3grw_A          103 TLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADV  182 (241)
T ss_dssp             EEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEE
T ss_pred             EEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCce
Confidence            444432                                  12223332    1     0                  012


Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       183 ~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V  216 (241)
T 3grw_A          183 RLRLANVSERDGGEYLCRATNFIGVA-EKAFWLSV  216 (241)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEC
T ss_pred             EEEECcCCcccCcEEEEEEecCcceE-EEEEEEEe
Confidence            36778899999999999999999988 77888876

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.78  E-value=1.2e-17  Score=107.15  Aligned_cols=137  Identities=17%  Similarity=0.336  Sum_probs=94.7

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCC-CCceEEEe-cCCCCCCCce---e----eeccceEEEeecCCCCeEEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSK-KDSSLPSGEK---S----LEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~w~~-~~~~~~~~~~---~----~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      |+.+...|.  ...+..|+.+.|.|.+.+.+ .+.+.|++ ++..+.....   .    .....|.|.+++..|+|.|.|
T Consensus         2 ~~~v~~~p~--~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (291)
T 1qz1_A            2 VLQVDIVPS--QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKC   79 (291)
T ss_dssp             CCCEEEESS--SEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEE
T ss_pred             CcceEecCC--CceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEE
Confidence            466777766  45889999999999998876 68899999 6665543211   1    124579999999999999999


Q ss_pred             EeecCCCCceEEeEEEEEeeeec-----------------------------CCCCcc--------------ccCCceEE
Q psy7616          79 TATNGVGDPVTVDMTLEVLCKIL-----------------------------PSGEKS--------------LEGFSITL  115 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~l~v~~~~~-----------------------------~~~~~~--------------~~~~~~~l  115 (147)
                      .+.+..+...+..+.+.+..+|.                             +.|..+              ..+..|.+
T Consensus        80 ~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i  159 (291)
T 1qz1_A           80 VVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQI  159 (291)
T ss_dssp             EEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSCEEE
T ss_pred             EEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCcEEE
Confidence            99998765445556665543321                             122211              12335777


Q ss_pred             eecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         116 EKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       116 ~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      .+++.+|+|.|+|.|.|..+.. .+..+.|.|
T Consensus       160 ~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v  191 (291)
T 1qz1_A          160 RGIKKTDEGTYRCEGRILARGEINFKDIQVIV  191 (291)
T ss_dssp             TTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEE
T ss_pred             ccCccccCeEEEEEEEecCCCceeeEEEEEEE
Confidence            8999999999999999986433 234444443

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.78  E-value=2.1e-18  Score=116.45  Aligned_cols=123  Identities=21%  Similarity=0.278  Sum_probs=87.4

Q ss_pred             ceEEeeCCeEEEEEeecC-CCCCceEEEecCCCCCCCce-----------eeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK-----------SLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      ...+..|+.+.|.|.+.+ .+.+.+.|++++..+.....           ......|.|.++...|+|.|.|.+.|.   
T Consensus       236 ~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---  312 (423)
T 3qs7_E          236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---  312 (423)
T ss_dssp             EEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---
T ss_pred             ceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---
Confidence            567889999999999988 56789999999987754311           122346999999999999999999886   


Q ss_pred             ceEEeEEEEEeeeecC-------------------------------CCCcc----ccC-----CceEE--eecCCCCCe
Q psy7616          87 PVTVDMTLEVLCKILP-------------------------------SGEKS----LEG-----FSITL--EKVDRHQAG  124 (147)
Q Consensus        87 ~~~~~~~l~v~~~~~~-------------------------------~~~~~----~~~-----~~~~l--~~~~~~d~G  124 (147)
                       ....+.|.|..+|.+                               .|.++    ..+     ....+  .....+|+|
T Consensus       313 -~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~D~G  391 (423)
T 3qs7_E          313 -PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPG  391 (423)
T ss_dssp             -EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCS
T ss_pred             -CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEECCEECCCccccccCCcEEEEEecccccCE
Confidence             255555555433322                               22222    000     12222  456678999


Q ss_pred             EEEEEeecCCCCCcCeeeEEEE
Q psy7616         125 VYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       125 ~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|+|.|.|..|.. +.++.|.|
T Consensus       392 ~YtC~A~N~~G~~-~~s~~L~v  412 (423)
T 3qs7_E          392 EYIFHAENDDAQF-TKMFTLNI  412 (423)
T ss_dssp             CEEEEEEETTEEE-EEEEEEC-
T ss_pred             EEEEEEEcCCceE-EEEEEEEE
Confidence            9999999999988 88888876

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.78  E-value=9.4e-19  Score=106.05  Aligned_cols=110  Identities=16%  Similarity=0.324  Sum_probs=79.5

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEe-ecCCCCeEEEEEeecCCCCceEEeEEE-----
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK-VDRHQAGVYQCTATNGVGDPVTVDMTL-----   94 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~g~y~C~~~~~~~~~~~~~~~l-----   94 (147)
                      ....|+.+.|.|.+.+ + +.+.|++++..+...    .+..|.|.+ +...|+|.|.|.+.+..+.. ...+.+     
T Consensus        10 v~~~G~~v~L~C~~~~-~-~~i~W~k~g~~l~~~----~~~~L~I~~~~~~~D~G~Y~C~a~n~~g~~-~~~~~~~v~~~   82 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-D-ENLKWEKNGQELPQK----HDKHLVLQDFSEVEDSGYYVCYTPASNKNT-YLYLKARVGSA   82 (186)
T ss_dssp             EEEETTEEEEECSSCC-C-TTCEEEETTEEECSC----CCSEEEEESCCTTTSCEEEEEECSSCCCCC-CEEECCCCCSC
T ss_pred             EEeCCcEEEEEEeCCC-C-CceEEEECCEECCCC----CCCEEEECCCCccccCEEEEEEEEeCCCcE-EEEEEEEEecc
Confidence            5578999999999877 4 359999998776542    345799999 99999999999998875541 111111     


Q ss_pred             -------------------------------------------EEe---eeecCCCCcc--------ccCCceEEeecCC
Q psy7616          95 -------------------------------------------EVL---CKILPSGEKS--------LEGFSITLEKVDR  120 (147)
Q Consensus        95 -------------------------------------------~v~---~~~~~~~~~~--------~~~~~~~l~~~~~  120 (147)
                                                                 .+.   ..|.+.|.++        ..+..|.|.+++.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~v~l~C~~p~p~i~W~k~g~~i~~~~~~~~~L~i~~v~~  162 (186)
T 1jbj_A           83 DDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQVDGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAK  162 (186)
T ss_dssp             CCCCCCCCCCCCCSCCSSSTTCCSCCCCSSCCEECCCSSSCEEEEECSSSCSCEEEEETTEECCCSSCCSSCCEEEETTS
T ss_pred             cccccccccccccccCCccccccccccccccccceecCCCCeEEEEeeCCCCeEEEEECCEECcccCCCcceEEECCCCc
Confidence                                                       111   1234445443        2355688899999


Q ss_pred             CCCeEEEEEeecCCCCC
Q psy7616         121 HQAGVYQCTATNGVGDP  137 (147)
Q Consensus       121 ~d~G~Y~C~a~n~~g~~  137 (147)
                      +|+|.|+|.|.|..|..
T Consensus       163 ~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          163 DPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CCEEEEEEEESSCEEEE
T ss_pred             CcCEEEEEEEEcCcCCc
Confidence            99999999999998854

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.78  E-value=4.9e-19  Score=109.04  Aligned_cols=127  Identities=13%  Similarity=0.222  Sum_probs=86.9

Q ss_pred             ceEEeeCCeEEEEEeecC-CCCCceEEEecCCCCCCCce--ee-----eccceEEEeecCCCCeEEEEEeecCCCCceEE
Q psy7616          19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEK--SL-----EGFSITLEKVDRHQAGVYQCTATNGVGDPVTV   90 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~--~~-----~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   90 (147)
                      ...+.+|+.+.|.|.+.+ .|.+.+.|++++..+.....  ..     ....|.|.++...|+|.|+|.+.|........
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~Ng~a~~~~~   90 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHST   90 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEECCCeEEEEE
Confidence            457889999999999854 68899999999988754322  11     11258999999999999999877622110000


Q ss_pred             ---------------------------e---------------EEEE--Ee---eeecCCCCcc-----------ccC--
Q psy7616          91 ---------------------------D---------------MTLE--VL---CKILPSGEKS-----------LEG--  110 (147)
Q Consensus        91 ---------------------------~---------------~~l~--v~---~~~~~~~~~~-----------~~~--  110 (147)
                                                 +               +.+.  +.   +.|.+.|.++           ...  
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~  170 (207)
T 3rbs_A           91 VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGI  170 (207)
T ss_dssp             EEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCCSSEE
T ss_pred             EEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEcCCCE
Confidence                                       0               0011  11   1244556554           011  


Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.+
T Consensus       171 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~~  205 (207)
T 3rbs_A          171 CTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKLVD  205 (207)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEECC
T ss_pred             EEEEECCCCcccCEEEEEEEEcCCCEE-EEEEEEec
Confidence            247889999999999999999999988 77777754

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.77  E-value=3.6e-18  Score=105.96  Aligned_cols=136  Identities=20%  Similarity=0.187  Sum_probs=90.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce----eeecc--ceEEEeecCCCCeEEEEEe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGF--SITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~----~~~~~--~l~~~~~~~~~~g~y~C~~   80 (147)
                      .+|.+...|.   ..+..|++++|.|.+.+ +.+.+.|++++..+.....    .....  .|.|.+++..|+|.|.|.+
T Consensus         8 ~~P~i~~~p~---~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   83 (218)
T 1uct_A            8 PMPFISAKSS---PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQY   83 (218)
T ss_dssp             CCCCEEESSC---SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEecCC---CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence            4677777765   27889999999999876 6778999999876532111    11234  7999999999999999999


Q ss_pred             ecCCCCc-eEEeEEEEEee---eecC----------------------------CCCcc-----------ccCCceEEee
Q psy7616          81 TNGVGDP-VTVDMTLEVLC---KILP----------------------------SGEKS-----------LEGFSITLEK  117 (147)
Q Consensus        81 ~~~~~~~-~~~~~~l~v~~---~~~~----------------------------~~~~~-----------~~~~~~~l~~  117 (147)
                      .+..+.. .+..+.+.+..   +|.+                            .|.++           ..+..+.|.+
T Consensus        84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~  163 (218)
T 1uct_A           84 RIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGP  163 (218)
T ss_dssp             EETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCS
T ss_pred             EcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEcc
Confidence            9865421 12334444432   1111                            11111           0123466689


Q ss_pred             cCCCCCeEEEEEeecCC----CCCcCeeeEEEE
Q psy7616         118 VDRHQAGVYQCTATNGV----GDPVTVDMTLEV  146 (147)
Q Consensus       118 ~~~~d~G~Y~C~a~n~~----g~~~~~~~~l~V  146 (147)
                      ++.+|+|.|+|.|.|..    .+..+..+.|.|
T Consensus       164 v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  196 (218)
T 1uct_A          164 VDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV  196 (218)
T ss_dssp             CCGGGCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             CCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEE
Confidence            99999999999999863    223466777776

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.77  E-value=3.5e-18  Score=104.70  Aligned_cols=128  Identities=22%  Similarity=0.413  Sum_probs=91.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCC-------------CCceeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP-------------SGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~-------------~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++++..+.             ..........|.|.+++..|+|.|.|.+.+..+
T Consensus        13 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~g   92 (209)
T 1nbq_A           13 EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEEGG   92 (209)
T ss_dssp             BCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEETTS
T ss_pred             ceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeeccEEEEeeCCHHHCcEEEEEEecCCC
Confidence            5678899999999999888888999999876520             111122346799999999999999999998654


Q ss_pred             Cc-eEEeEEEEEeeeecCC------------------------------CCcc-----c-----------------cCCc
Q psy7616          86 DP-VTVDMTLEVLCKILPS------------------------------GEKS-----L-----------------EGFS  112 (147)
Q Consensus        86 ~~-~~~~~~l~v~~~~~~~------------------------------~~~~-----~-----------------~~~~  112 (147)
                      .. .+..+.+.+..+|.++                              |..+     .                 ....
T Consensus        93 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  172 (209)
T 1nbq_A           93 NSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGE  172 (209)
T ss_dssp             SCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCC
T ss_pred             CccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcce
Confidence            22 1334444444433321                              2111     0                 2346


Q ss_pred             eEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         113 ITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      |.+.+++.+|+|.|+|.|.|..|.. .+..+.|.|
T Consensus       173 L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          173 LVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             EEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             EEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence            7788999999999999999999988 566677666

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.77  E-value=5.3e-18  Score=102.82  Aligned_cols=136  Identities=17%  Similarity=0.128  Sum_probs=89.9

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC----ceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+|.+...|..   .+..|++++|.|.+.+ +.+.+.|++++..+...    ........|.|.+++..|+|.|.|.+.+
T Consensus         3 ~~P~i~~~p~~---~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~   78 (188)
T 1oll_A            3 PKPFIWAEPHF---MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (188)
T ss_dssp             CCCEEEEESCS---EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeecCC---cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecC
Confidence            36777777653   7889999999999865 45689999988654210    1122456789999999999999999977


Q ss_pred             CCCCc-eEEeEEEEEee---eec---------------------------CCCCcc-----------ccCCceEEeecCC
Q psy7616          83 GVGDP-VTVDMTLEVLC---KIL---------------------------PSGEKS-----------LEGFSITLEKVDR  120 (147)
Q Consensus        83 ~~~~~-~~~~~~l~v~~---~~~---------------------------~~~~~~-----------~~~~~~~l~~~~~  120 (147)
                      ..+.. .+..+.+.+..   +|.                           +.|.++           ..+..+.|.+++.
T Consensus        79 ~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~  158 (188)
T 1oll_A           79 GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTT  158 (188)
T ss_dssp             TTEECCCCCCEEEEEESCSCCCEEEEESCSEEETTCEEEEEEECSSSCSEEEEEEESSSCEEEEEECSSEEEEEEEECCG
T ss_pred             CCCCCCCCCceEEEecccCCCCeEEECCCCccccCCEEEEEEEcCCCCCEEEEEECCccccccccCCCceeEEEECCCCc
Confidence            53211 12334444431   111                           112111           0123567789999


Q ss_pred             CCCeEEEEEeecCC--CCCcCeeeEEEE
Q psy7616         121 HQAGVYQCTATNGV--GDPVTVDMTLEV  146 (147)
Q Consensus       121 ~d~G~Y~C~a~n~~--g~~~~~~~~l~V  146 (147)
                      +|+|.|+|.|.|..  ....+..+.|.|
T Consensus       159 ~d~G~Y~C~a~n~~~~~s~~S~~~~l~V  186 (188)
T 1oll_A          159 AHRGTYRCFGSYNNHAWSFPSEPVKLLV  186 (188)
T ss_dssp             GGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred             CCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence            99999999999874  234477788876

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.77  E-value=7.4e-18  Score=112.56  Aligned_cols=137  Identities=22%  Similarity=0.417  Sum_probs=96.5

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC---c--eeeeccceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG---E--KSLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.+.+.+.|++++..+...   .  .......|.|.++...|+|.|.|.+.
T Consensus       120 ~p~~~~~~~~--~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  197 (403)
T 3laf_A          120 GPLRFLSQTE--SITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSAR  197 (403)
T ss_dssp             CCCEECSCCC--CEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEE
T ss_pred             CCCccccCCC--cEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEEcCCceEEEcccccccCEEEEEEEE
Confidence            4555544433  568889999999999988888999999998876321   1  12345679999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeee-----------------------------------cCCCCcc-------------ccCCce
Q psy7616          82 NGVGDPVTVDMTLEVLCKI-----------------------------------LPSGEKS-------------LEGFSI  113 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~-----------------------------------~~~~~~~-------------~~~~~~  113 (147)
                      +..+........+.+...|                                   .+.|..+             ..+..+
T Consensus       198 n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~~~~~L  277 (403)
T 3laf_A          198 NPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNL  277 (403)
T ss_dssp             CSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEETTTEE
T ss_pred             cCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEECCccEE
Confidence            8665432233334333222                                   2222221             123457


Q ss_pred             EEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         114 TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       114 ~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       278 ~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  309 (403)
T 3laf_A          278 LISNVTDDDSGTYTCVVTYKNENI-SASAELTV  309 (403)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEeCCCHHHCEEEEEEEEcCCCce-EEEEEEEE
Confidence            778999999999999999998876 66777766

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.77  E-value=6.4e-18  Score=104.34  Aligned_cols=128  Identities=17%  Similarity=0.266  Sum_probs=82.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCC---ceEEEecCCCCCC-----------------C-----------ceeeeccceEEEe
Q psy7616          19 QLTVRKGGTITLECKASGNPVP---SIIWSKKDSSLPS-----------------G-----------EKSLEGFSITLEK   67 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~---~v~w~~~~~~~~~-----------------~-----------~~~~~~~~l~~~~   67 (147)
                      .+.+..|+.++|.|.+.+.+.+   .+.|++++.....                 .           ........|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            4577889999999998876655   3889997654210                 0           0011234699999


Q ss_pred             ecCCCCeEEEEEeecCCCCceEEeEEEEEeeee------------------------------cCCCCcc----------
Q psy7616          68 VDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKI------------------------------LPSGEKS----------  107 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~~------------------------------~~~~~~~----------  107 (147)
                      ++..|+|.|.|.+.+..+........+.+..+|                              .+.|..+          
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~  169 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQE  169 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEE
T ss_pred             CCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcce
Confidence            999999999999987655432222222222211                              1112111          


Q ss_pred             --ccC------CceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         108 --LEG------FSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       108 --~~~------~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                        ..+      ..|.|.+++.+|+|.|+|.|.|..|.. .+.+++|+|
T Consensus       170 ~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V  217 (225)
T 4fmk_A          170 PGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSV  217 (225)
T ss_dssp             ECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCB
T ss_pred             EEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEE
Confidence              111      136778889999999999999998866 344566655

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.76  E-value=4.3e-18  Score=117.71  Aligned_cols=123  Identities=24%  Similarity=0.313  Sum_probs=90.5

Q ss_pred             ceEEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCCce-----------eeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEK-----------SLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      ...+..|+.+.|.|.+. +.|.+.+.|++++..+.....           ......|.|.++...|+|.|.|.+.|.   
T Consensus       236 ~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---  312 (527)
T 3qs9_E          236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---  312 (527)
T ss_dssp             EEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---
T ss_pred             ceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---
Confidence            56888999999999996 888999999999987754321           112345899999999999999999886   


Q ss_pred             ceEEeEEEEEeeee-------------------------------cCCCCcc-----------ccCCceEEeecCCCCCe
Q psy7616          87 PVTVDMTLEVLCKI-------------------------------LPSGEKS-----------LEGFSITLEKVDRHQAG  124 (147)
Q Consensus        87 ~~~~~~~l~v~~~~-------------------------------~~~~~~~-----------~~~~~~~l~~~~~~d~G  124 (147)
                       ....+.|.|..+|                               .+.|.++           ..+..|.+.+++.+|+|
T Consensus       313 -~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G  391 (527)
T 3qs9_E          313 -PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPG  391 (527)
T ss_dssp             -EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCS
T ss_pred             -CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCE
Confidence             2444445544322                               2233322           12346778999999999


Q ss_pred             EEEEEeecCCCCCcCeeeEEEE
Q psy7616         125 VYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       125 ~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|+|.|.|..|.. +..+.|.|
T Consensus       392 ~YtC~A~N~~g~~-~~~~~L~V  412 (527)
T 3qs9_E          392 EYIFHAENDDAQF-TKMFTLNI  412 (527)
T ss_dssp             CEEEEEEETTEEE-EEEEEEC-
T ss_pred             EEEEEEEeCCCcE-EEEEEEEE
Confidence            9999999999987 66777776

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.76  E-value=6.6e-18  Score=110.21  Aligned_cols=142  Identities=16%  Similarity=0.240  Sum_probs=96.4

Q ss_pred             eeEEeCCceEEcCCCCceEEeeC---CeEEEEEe-ecCCCCCceEEEecCCCCCC-------CceeeeccceEEEeecCC
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKG---GTITLECK-ASGNPVPSIIWSKKDSSLPS-------GEKSLEGFSITLEKVDRH   71 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g---~~~~l~C~-~~~~~~~~v~w~~~~~~~~~-------~~~~~~~~~l~~~~~~~~   71 (147)
                      ..+..+|.+........+.+..|   +.+.|.|. ..+.|.+.+.|+++......       .......+.|.|.++...
T Consensus       125 l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~  204 (331)
T 3u83_A          125 LTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREA  204 (331)
T ss_dssp             EEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGG
T ss_pred             EEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeECCCCcEEEEEEEEEEecccc
Confidence            34556777655444446677888   77999997 77888899999996432211       111122345777777899


Q ss_pred             CCeEEEEEeecCCCCceEEeEEEEEeeeec-------------------------------CCCCcc---------ccCC
Q psy7616          72 QAGVYQCTATNGVGDPVTVDMTLEVLCKIL-------------------------------PSGEKS---------LEGF  111 (147)
Q Consensus        72 ~~g~y~C~~~~~~~~~~~~~~~l~v~~~~~-------------------------------~~~~~~---------~~~~  111 (147)
                      |.|.|.|.+.+..+.. +..+.+.+..+|.                               +.|..+         ..+.
T Consensus       205 d~G~Y~C~a~n~~~~~-~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~  283 (331)
T 3u83_A          205 HQQSLACIVNYHMDRF-KESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNR  283 (331)
T ss_dssp             TTCEEEEEEEETTEEE-EEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETT
T ss_pred             CCCEEEEEEecCCCcc-eeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccceecCc
Confidence            9999999999876542 4444444433322                               333322         1234


Q ss_pred             ceEEe-ecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLE-KVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~-~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+. +++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       284 ~L~i~~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  318 (331)
T 3u83_A          284 TLFFKGPINYSLAGTYICEATNPIGTR-SGQVEVNI  318 (331)
T ss_dssp             EEEECSCCCGGGCEEEEEEEEETTEEE-EEEEEECC
T ss_pred             EEEEeCCCccccCeEEEEEEEeccccc-eEEEEEEE
Confidence            56777 899999999999999999988 88888877

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.76  E-value=3.5e-18  Score=109.68  Aligned_cols=139  Identities=20%  Similarity=0.280  Sum_probs=93.8

Q ss_pred             EEeCCce-EEcCCCCceEEeeCCeEEEEEeecCCCC--CceEEEec-CCCCCCCce--eeeccceEEEeecCCCCeEEEE
Q psy7616           5 QMVPPSI-RTSPSNGQLTVRKGGTITLECKASGNPV--PSIIWSKK-DSSLPSGEK--SLEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus         5 ~~~~p~~-~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~w~~~-~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      +..+|.. ...+.  ...+..|+.+.|.|.+.+ +.  +.+.|+++ +..+.....  ......|.|.++...|+|.|.|
T Consensus        85 V~~~~~~~~~~~~--~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  161 (292)
T 4dkd_C           85 VKDPARPWNVLAQ--EVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQC  161 (292)
T ss_dssp             ECCSSCCEEESCS--EEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGGCSEEEE
T ss_pred             EcCccccccccCC--eEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHHCeEEEE
Confidence            3345543 33333  567889999999999987 54  67999997 444433222  2234458999999999999999


Q ss_pred             EeecCCCCceEEeEEEEEee----eecCC------------------------------CCccc----------------
Q psy7616          79 TATNGVGDPVTVDMTLEVLC----KILPS------------------------------GEKSL----------------  108 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~l~v~~----~~~~~------------------------------~~~~~----------------  108 (147)
                      .+.+..+...+..+.+.+..    +|.+.                              |..+.                
T Consensus       162 ~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~  241 (292)
T 4dkd_C          162 SALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRY  241 (292)
T ss_dssp             EECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEE
T ss_pred             EEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceecccee
Confidence            99976554333355555543    22111                              11110                


Q ss_pred             -cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 -EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 -~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                       ....|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       242 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  280 (292)
T 4dkd_C          242 QKVLTLNLDQVDFQHAGNYSCVASNVQGKH-STSMFFRVV  280 (292)
T ss_dssp             EEEEEEEESSCCTTSCEEEEEEEECSSCEE-EEEEEECC-
T ss_pred             eeEEEEEECccChhcCeEEEEEEecCCCCc-eeEEEEEEe
Confidence             00156778999999999999999999987 778888763

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.76  E-value=1.1e-17  Score=100.81  Aligned_cols=120  Identities=19%  Similarity=0.273  Sum_probs=82.2

Q ss_pred             EEeeCCeEEEEEeecCCCCC--ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEee
Q psy7616          21 TVRKGGTITLECKASGNPVP--SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~--~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~   98 (147)
                      .+..|+.+.|.|.+.+.+.+  .+.|++++..+...........+.+.  ...|+|.|.|.+.+...    ..+.+.+..
T Consensus         9 ~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~~~~~l~i~--~~~d~G~Y~C~~~n~~~----~~~~l~V~~   82 (184)
T 3b5h_A            9 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVD--SDDQWGEYSCVFLPEPM----GTANIQLHG   82 (184)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEEC--GGGCCEEEEEEEESTTS----CEEEEEECC
T ss_pred             EEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccCCcEEEEEe--chhhCeEEEEEEECCcC----cEEEEEEec
Confidence            67899999999998876666  89999988766433322223344444  58899999999987321    122223322


Q ss_pred             e------------------------------ecCCCCc---c-----ccC-------------CceEEeecC-CCCCeEE
Q psy7616          99 K------------------------------ILPSGEK---S-----LEG-------------FSITLEKVD-RHQAGVY  126 (147)
Q Consensus        99 ~------------------------------~~~~~~~---~-----~~~-------------~~~~l~~~~-~~d~G~Y  126 (147)
                      +                              |.+.|..   +     ..+             ..|.+.+++ .+|+|.|
T Consensus        83 ~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y  162 (184)
T 3b5h_A           83 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQY  162 (184)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEEE
T ss_pred             CCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccccccCceE
Confidence            1                              3334444   1     001             157778999 8999999


Q ss_pred             EEEeecCCCCCcCeeeEEEEC
Q psy7616         127 QCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       127 ~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      +|.|.|..|.. +..+.|.|.
T Consensus       163 ~C~a~N~~g~~-~~~~~l~V~  182 (184)
T 3b5h_A          163 RCNGTSSKGSD-QAIITLRVR  182 (184)
T ss_dssp             EEEEEETTEEE-EEEEEEEEC
T ss_pred             EEEEEeCCCcc-eEEEEEEEe
Confidence            99999999988 777888874

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.76  E-value=4.3e-18  Score=110.19  Aligned_cols=139  Identities=16%  Similarity=0.207  Sum_probs=91.0

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCCce------eeeccceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+|.......+.......|+.+.+.|.. .+.|.+.+.|++++..+.....      ....+.|.|..+...|.|.|.|.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~  190 (308)
T 4fom_A          111 VEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCV  190 (308)
T ss_dssp             BCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEE
T ss_pred             eccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeecccccccceEEeeeecCCccEEEE
Confidence            4444433222223455668899999974 5778899999999887753222      11234688888999999999999


Q ss_pred             eecCCCCc-eEEeEEEEEeeeec-------------------------------CCCCcc---------ccC-CceEEee
Q psy7616          80 ATNGVGDP-VTVDMTLEVLCKIL-------------------------------PSGEKS---------LEG-FSITLEK  117 (147)
Q Consensus        80 ~~~~~~~~-~~~~~~l~v~~~~~-------------------------------~~~~~~---------~~~-~~~~l~~  117 (147)
                      +.+..+.. .+..+.|.+..+|.                               +.|.++         ..+ ..+.+.+
T Consensus       191 a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~  270 (308)
T 4fom_A          191 VKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHP  270 (308)
T ss_dssp             EECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSC
T ss_pred             EEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECC
Confidence            99875543 23333444433332                               233322         111 1223467


Q ss_pred             cCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         118 VDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       118 ~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       271 v~~~d~G~Y~C~A~N~~G~~-~~~~~l~V  298 (308)
T 4fom_A          271 LTFNYSGVYICKVTNSLGQR-SDQKVIYI  298 (308)
T ss_dssp             CCSCCCSEEEEEEEETTEEE-EEEEECCE
T ss_pred             CChhhCEEEEEEEEeCCCcE-EEEEEEEE
Confidence            89999999999999999987 77777766

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.76  E-value=9.7e-19  Score=105.16  Aligned_cols=126  Identities=15%  Similarity=0.206  Sum_probs=84.4

Q ss_pred             ceEEeeCCeEEEEEeecC--CCCCceEEEecCCCCC-----------CCc-eeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASG--NPVPSIIWSKKDSSLP-----------SGE-KSLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~--~~~~~v~w~~~~~~~~-----------~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .+.+..|+++.|.|...+  .+.+.+.|++++..+.           ... .....+.|.|.+++..|+|.|.|.+.+..
T Consensus         5 ~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~~~~gsL~I~~v~~~D~G~Y~C~~~n~~   84 (176)
T 1hng_A            5 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   84 (176)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEECCCCcEEEcccccccCEEEEEEEEeCC
Confidence            356788999999995433  4566899999874321           111 12245569999999999999999999877


Q ss_pred             CCc-eEEeEEEEEeeee------------------------cCCCCcc----ccCCceEEeecCCCCCeEEEEEeecCCC
Q psy7616          85 GDP-VTVDMTLEVLCKI------------------------LPSGEKS----LEGFSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus        85 ~~~-~~~~~~l~v~~~~------------------------~~~~~~~----~~~~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      +.. .+..+.|.|..++                        .+.|..+    ..+..+.+.+++.+|+|.|+|.|.|..|
T Consensus        85 g~~~~~~~~~l~V~~~~~~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~~~~i~~~~~~d~G~Y~C~a~N~~g  164 (176)
T 1hng_A           85 GTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS  164 (176)
T ss_dssp             CCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSCEEEEEEETTE
T ss_pred             CCEEEEEEEEEEEeCCCCCCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCCcEEEEEEEccCCeEEEEEEEecCC
Confidence            764 2445555554321                        1112211    1122345578899999999999999999


Q ss_pred             CCcCeeeEEE
Q psy7616         136 DPVTVDMTLE  145 (147)
Q Consensus       136 ~~~~~~~~l~  145 (147)
                      .. +....|.
T Consensus       165 ~~-~~~~~l~  173 (176)
T 1hng_A          165 QE-SEMEVVN  173 (176)
T ss_dssp             EE-EEEECCC
T ss_pred             Cc-eeccccc
Confidence            77 5555544

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.76  E-value=8.3e-18  Score=108.01  Aligned_cols=140  Identities=20%  Similarity=0.215  Sum_probs=95.8

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCC-CceEEE-ecCCCCCCCcee--eeccceEEEeecCCCCe-EEEE
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPV-PSIIWS-KKDSSLPSGEKS--LEGFSITLEKVDRHQAG-VYQC   78 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~w~-~~~~~~~~~~~~--~~~~~l~~~~~~~~~~g-~y~C   78 (147)
                      .+..+|.....+.  ...+..|+.+.|.|.+.+ |. +.+.|+ +++..+......  .....|.|.++...|+| .|.|
T Consensus        87 ~V~~~~~~~~~~~--~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G~~Y~C  163 (290)
T 2o26_X           87 FVRDPAKLFLVGL--PLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRC  163 (290)
T ss_dssp             EEECSSCCBCCCC--CEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTTCEEEE
T ss_pred             EEeCCCccccccc--ceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCCCEEEE
Confidence            4445565553333  567889999999999886 77 889995 577666543332  33457999999999999 9999


Q ss_pred             EeecCCCCceEEeEEEEEe----eeec------------------------------CCCCccc-c--------------
Q psy7616          79 TATNGVGDPVTVDMTLEVL----CKIL------------------------------PSGEKSL-E--------------  109 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~l~v~----~~~~------------------------------~~~~~~~-~--------------  109 (147)
                      .+.+..+...+..+.+.+.    .+|.                              +.|..+. .              
T Consensus       164 ~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~  243 (290)
T 2o26_X          164 AAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHR  243 (290)
T ss_dssp             EEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEEEE
T ss_pred             EEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccccccc
Confidence            9998643322233445443    2221                              2232221 0              


Q ss_pred             -------CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 -------GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 -------~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                             ...|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       244 ~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  287 (290)
T 2o26_X          244 GDFNYERQETLTISSARVDDSGVFMCYANNTFGSA-NVTTTLKVV  287 (290)
T ss_dssp             ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEECC-
T ss_pred             CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcE-EEEEEEEEE
Confidence                   1246668899999999999999999988 778888773

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.75  E-value=7e-18  Score=111.14  Aligned_cols=137  Identities=18%  Similarity=0.249  Sum_probs=98.9

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc---eeeeccceEEEeecCCCCe-EEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE---KSLEGFSITLEKVDRHQAG-VYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~g-~y~C~~~~   82 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+....   .......|.|.++...|+| .|.|.+.+
T Consensus       157 ~~P~i~~~~~--~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~~Y~C~a~n  234 (347)
T 2ifg_A          157 GVPTLKVQVP--NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEN  234 (347)
T ss_dssp             CCCEEEEECC--SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEE
T ss_pred             CCCceeccCC--ceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccceecccceEEEeeCChHHCCCeEEEEEEc
Confidence            4677777665  4478899999999999998999999999987653211   1234567999999999999 99999987


Q ss_pred             CCCCceEEeEEEEEe-------------------------eeecCCCCcc----cc------------------CCceEE
Q psy7616          83 GVGDPVTVDMTLEVL-------------------------CKILPSGEKS----LE------------------GFSITL  115 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~-------------------------~~~~~~~~~~----~~------------------~~~~~l  115 (147)
                      ..+.. +..+.+.|.                         ..|.+.|.++    ..                  .+.+.+
T Consensus       235 ~~g~~-~~~~~l~V~~~P~i~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I  313 (347)
T 2ifg_A          235 DVGRA-EVSVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRL  313 (347)
T ss_dssp             TTEEC-CEEECCCCBEEEEEEECCCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEE
T ss_pred             CCCCE-EEEEEEEEcCCCeeeeccCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEE
Confidence            65432 222222222                         2234445433    10                  223788


Q ss_pred             eecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         116 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       116 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus       314 ~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  344 (347)
T 2ifg_A          314 NQPTHVNNGNYTLLAANPFGQA-SASIMAAFM  344 (347)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEE-EEEEEECSC
T ss_pred             CCCCcccCceEEEEEecCCCce-eeEEEEEec
Confidence            8999999999999999999987 778888764

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.75  E-value=4.8e-17  Score=112.21  Aligned_cols=137  Identities=19%  Similarity=0.285  Sum_probs=100.6

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCc-eEEEecCCCC--CCCc--------eeeeccceEEEeecCCCCeE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSKKDSSL--PSGE--------KSLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~w~~~~~~~--~~~~--------~~~~~~~l~~~~~~~~~~g~   75 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.+.+. +.|++++..+  ....        .......|.|.++...|+|.
T Consensus       210 ~~p~i~~~~~--~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~  287 (524)
T 2ec8_A          210 AVPVVSVSKA--SYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGV  287 (524)
T ss_dssp             SCCEEECSCS--EEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEE
T ss_pred             CCCcEEecCC--cceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEE
Confidence            4667766655  45789999999999998888776 9999998873  2211        12345679999999999999


Q ss_pred             EEEEeecCCCCceEEeEEEEEeee--------------------------------ec-CCCCcc----c----------
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLCK--------------------------------IL-PSGEKS----L----------  108 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~~--------------------------------~~-~~~~~~----~----------  108 (147)
                      |.|.+.|..+.. ...+.|.|..+                                |. +.|..+    .          
T Consensus       288 Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~  366 (524)
T 2ec8_A          288 FMCYANNTFGSA-NVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSE  366 (524)
T ss_dssp             EEEEEECSSCEE-EEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEEESSSCBCSSSBCCEESCC
T ss_pred             EEEEEEecCCce-EEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEEEECCeeccCCccceeEEc
Confidence            999999877664 44555544321                                23 444433    0          


Q ss_pred             ------cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 ------EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ------~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                            ....|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       367 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  410 (524)
T 2ec8_A          367 NESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNA-AIAFNVYVN  410 (524)
T ss_dssp             SSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             cCCCceeEEEEEEeecCcccCeEEEEEEEecCceE-EEEEEEEEe
Confidence                  01357888999999999999999999987 778888773

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.74  E-value=2.5e-18  Score=118.87  Aligned_cols=141  Identities=21%  Similarity=0.215  Sum_probs=94.8

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-eeeeccceEEEeecCCCCeEEEEEeec
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+..+|.+...+......+..|+.+.|.|.+.+.|.|.+.|++++..+.... .......|.|.++...|+|.|+|.+.|
T Consensus       320 ~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~N  399 (527)
T 3qs9_E          320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAEN  399 (527)
T ss_dssp             EEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCSCEEEEEEE
T ss_pred             EEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCEEEEEEEEe
Confidence            3445666655554444567789999999999999999999999988774332 223455788999999999999999999


Q ss_pred             CCCCceEEeEEEEEeeee---------------------cCCCCcccc-----------------------CC---ceEE
Q psy7616          83 GVGDPVTVDMTLEVLCKI---------------------LPSGEKSLE-----------------------GF---SITL  115 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~---------------------~~~~~~~~~-----------------------~~---~~~l  115 (147)
                      ..+.. ...+.|.|..+|                     .+.|.....                       +.   ...|
T Consensus       400 ~~g~~-~~~~~L~V~~~P~i~~~~~~~~l~C~a~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~L  478 (527)
T 3qs9_E          400 DDAQF-TKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTL  478 (527)
T ss_dssp             TTEEE-EEEEEEC--CCCEEEECCCCE---EEEECSSCCEEEEECCC-----CCCCCCCCEEEC---------CEEEEEC
T ss_pred             CCCcE-EEEEEEEEecCCeEEEeCCCCEEEEEEEEEcCCeEEEEECCCCcCCCccccccccceeccccccCCceEEEEEE
Confidence            87764 555666665443                     333432100                       00   1112


Q ss_pred             eecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         116 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       116 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .....+|+|.|+|.|.|.+|.. +..+.|.|
T Consensus       479 ~i~~~~d~G~Y~C~A~N~~G~~-~~~~~L~V  508 (527)
T 3qs9_E          479 NMSEAIKGFLVKCCAYNSLGTS-CETILLNS  508 (527)
T ss_dssp             CCCCSSCSCEEEEEEECSSCEE-EEEEEC--
T ss_pred             EEEEcCCCEEEEEEEEeCCCCc-eeEEEEec
Confidence            2234579999999999999988 77777765

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.74  E-value=1.9e-16  Score=101.56  Aligned_cols=137  Identities=20%  Similarity=0.361  Sum_probs=94.5

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEe-cCCCCCCCce--eee---ccceEEEeecCCCCeEEEEEe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK-KDSSLPSGEK--SLE---GFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~-~~~~~~~~~~--~~~---~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.+. .+.|++ ++..+.....  ...   ...|.|.+++..|+|.|.|.+
T Consensus         3 ~~p~v~~~~~--~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~   79 (291)
T 2wim_A            3 ALLQVTISLS--KVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQA   79 (291)
T ss_dssp             CCCEEEESCS--EEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCceEEEecc--ceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEE
Confidence            3567777766  568999999999999988664 899999 5555543222  111   237999999999999999999


Q ss_pred             ecCCCCceEEeEEEEEeeeecCC-----------------------------CCcc--------------ccCCceEEee
Q psy7616          81 TNGVGDPVTVDMTLEVLCKILPS-----------------------------GEKS--------------LEGFSITLEK  117 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~-----------------------------~~~~--------------~~~~~~~l~~  117 (147)
                      .+..+......+.+.+..+|.+.                             |..+              ..+..+.+.+
T Consensus        80 ~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~  159 (291)
T 2wim_A           80 TDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILN  159 (291)
T ss_dssp             ECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEEETT
T ss_pred             ecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEEEEe
Confidence            99877654556666665443332                             1111              1233567788


Q ss_pred             cCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         118 VDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       118 ~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      ++.+|+|.|+|.|.|..+.. ....+.+.|
T Consensus       160 v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v  189 (291)
T 2wim_A          160 INKSDEGIYRCEGRVEARGEIDFRDIIVIV  189 (291)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEEEEEEEE
T ss_pred             cchhhCEEEEEEEEECCCCeeEEeeEEEEe
Confidence            99999999999999987543 233444443

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.74  E-value=4.3e-17  Score=103.07  Aligned_cols=128  Identities=17%  Similarity=0.249  Sum_probs=92.4

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      +|.+...|.  ...+..|+.+.|.|.+.+.+.+ .+.|++++..+..     ....|.|.++...|+|.|.|.+.+..+.
T Consensus         1 kP~i~~~p~--~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~-----~~~~l~i~~~~~~d~G~Y~C~~~~~~~s   73 (262)
T 3rjd_A            1 KAVITLQPP--WVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQT-----STPSYRITSASVNDSGEYRCQRGLSGRS   73 (262)
T ss_dssp             CCEEEESSC--CSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSC-----CSSEEEESSCCGGGCEEEEEEESSSCCC
T ss_pred             CCeEecCCC--cEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeec-----cCCeEEEecCCcccCeEEEEEEecCCcc
Confidence            467777776  4488999999999999888877 8999999877643     2456889999999999999999875443


Q ss_pred             ceEEeEEEEEeee-----------------------------ecCCCCcc-------ccCCceEEeecCCCCCeEEEEEe
Q psy7616          87 PVTVDMTLEVLCK-----------------------------ILPSGEKS-------LEGFSITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus        87 ~~~~~~~l~v~~~-----------------------------~~~~~~~~-------~~~~~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .   .+.+.+..+                             +.+.|..+       ..+..+.+.+++.+|+|.|+|.|
T Consensus        74 ~---~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y~C~~  150 (262)
T 3rjd_A           74 D---PIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSG  150 (262)
T ss_dssp             C---CEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEEEEEE
T ss_pred             c---cEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCCCCeEEEEECChhhCEEEEEEE
Confidence            2   233333221                             11222222       12446777899999999999999


Q ss_pred             ecCCCCCcCeeeEEEE
Q psy7616         131 TNGVGDPVTVDMTLEV  146 (147)
Q Consensus       131 ~n~~g~~~~~~~~l~V  146 (147)
                      .|..+.. +..+.|.|
T Consensus       151 ~n~~~~~-~~~~~l~V  165 (262)
T 3rjd_A          151 MGKHRYT-SAGISVTV  165 (262)
T ss_dssp             ESSSEEE-EECEEEEE
T ss_pred             eCCCCcc-ccceEEEe
Confidence            9998755 66666665

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.74  E-value=5e-17  Score=100.32  Aligned_cols=127  Identities=19%  Similarity=0.308  Sum_probs=93.5

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc--e--ee---eccceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--K--SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~--~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      ++|.+ ..+.  .+.+..|+.+.|.|.+.+.|.+.+.|++++..+....  .  ..   ....|.|.++...|+|.|.|.
T Consensus        18 ~~P~~-~~p~--~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~   94 (215)
T 3mtr_A           18 YAPKL-QGPV--AVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCT   94 (215)
T ss_dssp             EEEEE-ECCS--EEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEE
T ss_pred             cCCcc-cCCc--eEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEE
Confidence            46666 3443  5688899999999999998999999999998775432  1  11   246799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeeeecCC---------------CC------------------cccc---------------CC
Q psy7616          80 ATNGVGDPVTVDMTLEVLCKILPS---------------GE------------------KSLE---------------GF  111 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~---------------~~------------------~~~~---------------~~  111 (147)
                      +.|..+.. ...+.+.+..+|..+               |.                  ....               ..
T Consensus        95 a~n~~g~~-~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~~~~~~w~~~~~~~~~~~~~~  173 (215)
T 3mtr_A           95 AVNRIGQE-SLEFILVQADTPSSPSIDQVEPYSSTAQVQFDEPEATGGVPILKYKAEWRAVGEEVWHSKWYDAKEASMEG  173 (215)
T ss_dssp             EECSSCEE-EEEEEEEECCCCCCCEEEEEEEETTEEEEEEECCSCCCSSCEEEEEEEEEETTCCCCEEEEEEHHHHHHHT
T ss_pred             EEECCCce-EEEEEEEECCCCCCCcceEEEEecceEEEEEecCCccCCCceEEEEEEEEECCCCcccccccccccccccc
Confidence            99988764 555666664433221               10                  0000               03


Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      .+.+.++...|.|.|+|.|.|..|..
T Consensus       174 ~l~i~~L~~~~~y~~~~~A~N~~G~s  199 (215)
T 3mtr_A          174 IVTIVGLKPETTYAVRLAALNGKGLG  199 (215)
T ss_dssp             EEEEECCCTTCEEEEEEEEEESSCBC
T ss_pred             cEEECCCCCCCEEEEEEEEEeCCccc
Confidence            46678999999999999999999977

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.74  E-value=8.9e-17  Score=104.49  Aligned_cols=137  Identities=18%  Similarity=0.190  Sum_probs=89.2

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      ..+|.+...|..   .+..|++++|.|.+.+. .+.+.|++++..+..... ......|.|.+++..|+|.|.|.+.+..
T Consensus        22 ~~~P~i~~~p~~---~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~   97 (316)
T 3vh8_G           22 QDKPFLSAWPSA---VVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPH   97 (316)
T ss_dssp             --CCEEEEESCS---EEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSS
T ss_pred             CCCCEeeccCCC---ccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCC
Confidence            457788777752   68899999999999875 678999999877643211 2345679999999999999999987522


Q ss_pred             C----CceEEeEEEEEeee---ec---------------------------CCCCcc---c-------------cCCceE
Q psy7616          85 G----DPVTVDMTLEVLCK---IL---------------------------PSGEKS---L-------------EGFSIT  114 (147)
Q Consensus        85 ~----~~~~~~~~l~v~~~---~~---------------------------~~~~~~---~-------------~~~~~~  114 (147)
                      .    ...+..+.+.+...   |.                           +.|.++   .             ....+.
T Consensus        98 ~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~  177 (316)
T 3vh8_G           98 SPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFS  177 (316)
T ss_dssp             SSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSCCSEEEEEETTCCSCCEEEECEEETTEEEEEEE
T ss_pred             CCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCCCcEEEEEECCCccccceeeeeecCCCceEEEE
Confidence            1    11123333433211   11                           011111   0             122466


Q ss_pred             EeecCCCCCeEEEEEeecCCCCC----cCeeeEEEE
Q psy7616         115 LEKVDRHQAGVYQCTATNGVGDP----VTVDMTLEV  146 (147)
Q Consensus       115 l~~~~~~d~G~Y~C~a~n~~g~~----~~~~~~l~V  146 (147)
                      |.+++.+|+|.|+|.|.|..|..    .+..+.|.|
T Consensus       178 i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V  213 (316)
T 3vh8_G          178 IGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVV  213 (316)
T ss_dssp             ECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEE
T ss_pred             ECCCChhhCceEEEEEecCCCCccccCCCCCEEEEe
Confidence            68899999999999999998742    144455544

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.74  E-value=1.5e-17  Score=102.67  Aligned_cols=127  Identities=17%  Similarity=0.201  Sum_probs=84.5

Q ss_pred             ceEEeeC--CeEEEEEeecCCCCCceEEEec---CCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEe
Q psy7616          19 QLTVRKG--GTITLECKASGNPVPSIIWSKK---DSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD   91 (147)
Q Consensus        19 ~~~~~~g--~~~~l~C~~~~~~~~~v~w~~~---~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   91 (147)
                      .+.+.+|  +.+.|.|.+.+ |.+.+.|++.   +..+.....  ......|.|.+++..|+|.|.|.+.+..+...+..
T Consensus        16 ~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~n~~~~~~s~~   94 (213)
T 2x1w_L           16 VVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIM   94 (213)
T ss_dssp             EEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTTEEEEEGGGTTTCSEEEEEEC----CEECCC
T ss_pred             EEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCccEEEccCChhcCceEEEEEEECCeeEEEEE
Confidence            5678889  99999999876 7789999884   444433322  23445799999999999999999987433221211


Q ss_pred             EEEEEee--e--------------------------------ecCCCCcccc-----------------------CCceE
Q psy7616          92 MTLEVLC--K--------------------------------ILPSGEKSLE-----------------------GFSIT  114 (147)
Q Consensus        92 ~~l~v~~--~--------------------------------~~~~~~~~~~-----------------------~~~~~  114 (147)
                      +.+.+..  +                                +.+.|..+..                       ...|.
T Consensus        95 ~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~  174 (213)
T 2x1w_L           95 YIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLT  174 (213)
T ss_dssp             EEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEE
T ss_pred             EEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEE
Confidence            2332210  0                                0123332200                       01267


Q ss_pred             EeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         115 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       115 l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      +.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus       175 I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~  206 (213)
T 2x1w_L          175 IDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVH  206 (213)
T ss_dssp             ESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             ECCCCcccCEEEEEEEecCCCcE-EEEEEEEEe
Confidence            78899999999999999999988 888888874

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.74  E-value=1.2e-17  Score=109.08  Aligned_cols=126  Identities=31%  Similarity=0.482  Sum_probs=93.5

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce------eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+.....      ......|.|.++...|+|.|.|.+.+..+.. ...+.
T Consensus       133 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~  211 (334)
T 1ry7_B          133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYT  211 (334)
T ss_dssp             EEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEE-EEEEE
T ss_pred             EEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCE-EEEEE
Confidence            5678899999999998888899999999887754321      1234479999999999999999999876553 45555


Q ss_pred             EEEeee----------------------------------ecCCCCc----c-----ccC-------------------C
Q psy7616          94 LEVLCK----------------------------------ILPSGEK----S-----LEG-------------------F  111 (147)
Q Consensus        94 l~v~~~----------------------------------~~~~~~~----~-----~~~-------------------~  111 (147)
                      +.+...                                  |.+.|..    +     ..+                   .
T Consensus       212 l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (334)
T 1ry7_B          212 LDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELE  291 (334)
T ss_dssp             EEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCC
T ss_pred             EEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCcccccccccc
Confidence            555431                                  1222322    1     000                   1


Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus       292 ~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~  326 (334)
T 1ry7_B          292 VLSLHNVTFEDAGEYTCLAGNSIGFS-HHSAWLVVL  326 (334)
T ss_dssp             CEEECSCCTTSCSEEEEEEEESSCCE-EEEEEEEEE
T ss_pred             EEEEccCCHHHCEEEEEEEeCCCCeE-EEEEEEEEE
Confidence            58888999999999999999999988 778888773

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.74  E-value=9.4e-17  Score=98.64  Aligned_cols=127  Identities=16%  Similarity=0.174  Sum_probs=83.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCC---ceEEEecCCCCCCCce--------------------------eeeccceEEEeec
Q psy7616          19 QLTVRKGGTITLECKASGNPVP---SIIWSKKDSSLPSGEK--------------------------SLEGFSITLEKVD   69 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~---~v~w~~~~~~~~~~~~--------------------------~~~~~~l~~~~~~   69 (147)
                      .+.+..|+++.|.|.+.+.+.+   .+.|++++........                          ......|.|.+++
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~   87 (218)
T 4frw_A            8 VVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAV   87 (218)
T ss_dssp             EEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESSCC
T ss_pred             eEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEeecc
Confidence            5688899999999999877655   3899998765432100                          0112369999999


Q ss_pred             CCCCeEEEEEeecCCCCceEEeEEEEEee------------------------------eecCCCCcc-----------c
Q psy7616          70 RHQAGVYQCTATNGVGDPVTVDMTLEVLC------------------------------KILPSGEKS-----------L  108 (147)
Q Consensus        70 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~~------------------------------~~~~~~~~~-----------~  108 (147)
                      ..|+|.|.|.+.+..+........+.+..                              +|.+.|..+           .
T Consensus        88 ~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~  167 (218)
T 4frw_A           88 QADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKH  167 (218)
T ss_dssp             GGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEEC
T ss_pred             HHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEec
Confidence            99999999998765443222222222221                              233344332           0


Q ss_pred             c-----CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 E-----GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~-----~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .     ...|.+.+++.+|+|.|+|.|.|..|.. +..+++.|
T Consensus       168 ~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~-~~~~t~~v  209 (218)
T 4frw_A          168 SRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ-DQRITHIL  209 (218)
T ss_dssp             SSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSS-CEEEEEEC
T ss_pred             CCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe-EEEEEEEE
Confidence            0     1246678889999999999999999987 55555543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.74  E-value=8e-17  Score=97.15  Aligned_cols=123  Identities=16%  Similarity=0.326  Sum_probs=85.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCC---------------C-ceee------eccceEEEeecCCCCeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS---------------G-EKSL------EGFSITLEKVDRHQAGVY   76 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~---------------~-~~~~------~~~~l~~~~~~~~~~g~y   76 (147)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++++.....               . ....      ....|.|.+++..|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            45788999999999988888889999998753110               0 0011      133599999999999999


Q ss_pred             EEEeecCCCCceEEeEEEEEee-------------------------eecCCCCcc-----ccCCceEEeecCCCCCeEE
Q psy7616          77 QCTATNGVGDPVTVDMTLEVLC-------------------------KILPSGEKS-----LEGFSITLEKVDRHQAGVY  126 (147)
Q Consensus        77 ~C~~~~~~~~~~~~~~~l~v~~-------------------------~~~~~~~~~-----~~~~~~~l~~~~~~d~G~Y  126 (147)
                      .|.+.+..+     .+.+.|..                         .|.+.|..+     ..+..|.+.+++.+|+|.|
T Consensus        84 ~C~~~~~~~-----~~~l~V~~~~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~~~~~L~i~~v~~~d~G~Y  158 (184)
T 2ny1_B           84 ICEVEDQKE-----EVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTW  158 (184)
T ss_dssp             EEEETTEEE-----EEEEEEEEEEESSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEEESSEEEESSCCGGGCEEE
T ss_pred             EEEEEcCCC-----cEEEEEEEecCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCccccCceEEEEecCCcCCCeEE
Confidence            999987532     22222221                         122223222     2344677789999999999


Q ss_pred             EEEeecCCCCCcCeeeEEEEC
Q psy7616         127 QCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       127 ~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      +|.|.|..|.. +..+.|.|+
T Consensus       159 ~C~a~n~~~~~-~~~~~l~V~  178 (184)
T 2ny1_B          159 TCTVLQNQKKV-EFKIDIVVL  178 (184)
T ss_dssp             EEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEEECCceE-EEEEEEEEE
Confidence            99999988876 777887763

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.74  E-value=1.5e-16  Score=112.11  Aligned_cols=125  Identities=20%  Similarity=0.299  Sum_probs=92.1

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee---eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ..+..|+.+.|.|.+.+ +.+.+.|++++..+......   ..+..|.|.++...|+|.|.|.+.|..|...+..+.|.|
T Consensus       477 ~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  555 (642)
T 1e07_A          477 KPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV  555 (642)
T ss_pred             eeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEE
Confidence            46779999999999885 78899999999887543322   235579999999999999999999987764344556666


Q ss_pred             eeeec------------------------------CCCCcc----ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeee
Q psy7616          97 LCKIL------------------------------PSGEKS----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM  142 (147)
Q Consensus        97 ~~~~~------------------------------~~~~~~----~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~  142 (147)
                      ..+|.                              +.|.++    ..+..|.+.+++.+|+|.|+|.|.|..|.. +.++
T Consensus       556 ~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~i~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~-~~s~  634 (642)
T 1e07_A          556 LYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFVSNLATGR-NNSI  634 (642)
T ss_pred             EeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEECCEECccCceEEECcccccCCeEEEEEEEecccCc-ceeE
Confidence            54332                              122221    223456778899999999999999999988 5565


Q ss_pred             EEEE
Q psy7616         143 TLEV  146 (147)
Q Consensus       143 ~l~V  146 (147)
                      .|.|
T Consensus       635 ~l~V  638 (642)
T 1e07_A          635 VKSI  638 (642)
T ss_pred             EEEE
Confidence            5554

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.73  E-value=5.8e-17  Score=107.18  Aligned_cols=126  Identities=16%  Similarity=0.171  Sum_probs=91.3

Q ss_pred             ceEEeeCCeEEEEEeecC-----CCCCceEEEecCCCCCC--------Cceee-------------e--ccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASG-----NPVPSIIWSKKDSSLPS--------GEKSL-------------E--GFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-----~~~~~v~w~~~~~~~~~--------~~~~~-------------~--~~~l~~~~~~~   70 (147)
                      ...+..|+.+.|.|.+.+     .|.+.+.|++++..+..        .....             .  ...|.|.++..
T Consensus       185 ~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~  264 (363)
T 1wio_A          185 IVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALP  264 (363)
T ss_dssp             EEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCG
T ss_pred             ceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCc
Confidence            346778999999998776     66788999999877654        11111             1  33789999999


Q ss_pred             CCCeEEEEEeecC--CCCceEEeEEEEEee----------------eec--CCCCcc----ccCCceEEeecCCCCCeEE
Q psy7616          71 HQAGVYQCTATNG--VGDPVTVDMTLEVLC----------------KIL--PSGEKS----LEGFSITLEKVDRHQAGVY  126 (147)
Q Consensus        71 ~~~g~y~C~~~~~--~~~~~~~~~~l~v~~----------------~~~--~~~~~~----~~~~~~~l~~~~~~d~G~Y  126 (147)
                      .|+|.|.|.+.|.  .+.. ...+.+.|..                +|.  +.|.++    ..+..+.+.+++.+|+|.|
T Consensus       265 ~d~G~Y~C~a~n~~~~g~~-~~~~~l~V~~v~g~~~~l~C~~~g~p~p~~~i~W~~~~~~~~~~~~l~i~~v~~~d~G~Y  343 (363)
T 1wio_A          265 QYAGSGNLTLALEAKTGKL-HQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMW  343 (363)
T ss_dssp             GGCEEEEEEECBTTTTCCE-EEEEEEEEEEECCCSSSEEEEEESSCCTTCCEEEECSSSSCSEEESSSEEEESSCCSEEE
T ss_pred             CcCcEEEEEEEEhhhcCeE-EEEEeEEEEEecCCCeeEEEEEccccCCCccEEEEeCCCceeeeeeeeeeeeccccceeE
Confidence            9999999999998  6653 5555554421                234  455554    3345678899999999999


Q ss_pred             EEEeecCCCCCcCeeeEEEEC
Q psy7616         127 QCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       127 ~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      +|.|.|. |.. .....|.|+
T Consensus       344 ~C~a~~~-~~~-~~~~~~~V~  362 (363)
T 1wio_A          344 QCLLSDS-GQV-LLESNIKVL  362 (363)
T ss_dssp             EEEECSS-SSC-CEEEEEEEC
T ss_pred             EEEEecC-CeE-EEecceEec
Confidence            9999965 444 667777775

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.73  E-value=1.5e-16  Score=101.02  Aligned_cols=119  Identities=24%  Similarity=0.343  Sum_probs=85.4

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCC-CCce--EEeEEEEEe
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV-GDPV--TVDMTLEVL   97 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~-~~~~--~~~~~l~v~   97 (147)
                      .+..|+.+.|.|.+.  |.+.+.|  ++..+....   ....|.+......|.|.|.|.+.+.. |...  ...+.+.+.
T Consensus       109 ~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~~---~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~  181 (265)
T 2oz4_A          109 EVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPLG---PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL  181 (265)
T ss_dssp             EEETTCEEEEEEECC--TTSEEEE--SSCSSSCCS---SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred             eecCCCcEEEEEEcc--CCCEEEE--CCEEccCCC---CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEE
Confidence            678899999999987  8889999  665553211   33567788888899999999997533 4432  255667777


Q ss_pred             eeecCCCCc---c---ccCCceEE---------------------------eecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616          98 CKILPSGEK---S---LEGFSITL---------------------------EKVDRHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus        98 ~~~~~~~~~---~---~~~~~~~l---------------------------~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      .+|.+....   .   .+|..+.|                           ..++.+|+|.|+|.|.|..|.. +..+.|
T Consensus       182 ~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W~~~~~~~~~~g~~~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l  260 (265)
T 2oz4_A          182 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEV-TREVTV  260 (265)
T ss_dssp             EEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSCEECCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred             eCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEEEECCcccCCCCcEEEeehhhCeEEEEEEECCCCcE-EEEEEE
Confidence            766654321   1   22333222                           4588999999999999999988 888888


Q ss_pred             EEC
Q psy7616         145 EVL  147 (147)
Q Consensus       145 ~V~  147 (147)
                      .|+
T Consensus       261 ~V~  263 (265)
T 2oz4_A          261 NVL  263 (265)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            874

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.73  E-value=1.5e-17  Score=102.24  Aligned_cols=123  Identities=18%  Similarity=0.198  Sum_probs=85.2

Q ss_pred             eeCCeEEEEEeecCC-CCCceEEEecCCCCCCCcee---ee--ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          23 RKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKS---LE--GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~~---~~--~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ..++.+.|.|.+.+. +.+.+.|++++..+......   ..  ...|.|.++...|+|.|.|.+.+..+.. ...+.+.+
T Consensus        15 c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~v   93 (212)
T 2r15_A           15 STAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLSG   93 (212)
T ss_dssp             ECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECH
T ss_pred             EcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcce-EEEEEEEE
Confidence            356778888888775 47889999998877543221   11  1349999999999999999998865442 22222211


Q ss_pred             e--------------------------------------------------eeecCCCCcc----cc----------C--
Q psy7616          97 L--------------------------------------------------CKILPSGEKS----LE----------G--  110 (147)
Q Consensus        97 ~--------------------------------------------------~~~~~~~~~~----~~----------~--  110 (147)
                      .                                                  ..|.+.|..+    ..          +  
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~  173 (212)
T 2r15_A           94 QAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRT  173 (212)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTE
T ss_pred             eeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCE
Confidence            0                                                  1233445433    00          1  


Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus       174 ~~L~i~~~~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  209 (212)
T 2r15_A          174 AYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVF  209 (212)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEEcCcchHHCeEEEEEEEcCCCcE-EEEEEEEEE
Confidence            267778999999999999999999987 778888773

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.73  E-value=2.4e-17  Score=109.85  Aligned_cols=128  Identities=27%  Similarity=0.435  Sum_probs=86.7

Q ss_pred             CCceEEcCCCCceEE---eeCCeEEEEEeecCCCCCceEEEecCCCCCCC---ceeeeccceEEEee-cCCCCeEEEEEe
Q psy7616           8 PPSIRTSPSNGQLTV---RKGGTITLECKASGNPVPSIIWSKKDSSLPSG---EKSLEGFSITLEKV-DRHQAGVYQCTA   80 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~---~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~---~~~~~~~~l~~~~~-~~~~~g~y~C~~   80 (147)
                      +|.|...|..  ..+   ..|+.+.|.|.+.|.|.|.+.|++++..+...   ......+.|.|.+. ...|+|.|.|.+
T Consensus         5 ~P~f~~~P~~--~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~g~l~i~~~~~~~D~G~Y~C~A   82 (384)
T 3kld_A            5 GPVFVQEPSH--VMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIA   82 (384)
T ss_dssp             EEEEEECCCC--EEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEEEETTEEEEESCCHHHHCEEEEEEE
T ss_pred             CCEEEeCCcc--eEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEEEECCEEEEcCCCCcccCEEEEEEE
Confidence            4566666653  233   47899999999999999999999999877532   12223455666665 678999999999


Q ss_pred             ecCCCCceEEeEEEEEeeee-------------------------------cCCCCcc-------------ccCCceEEe
Q psy7616          81 TNGVGDPVTVDMTLEVLCKI-------------------------------LPSGEKS-------------LEGFSITLE  116 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~-------------------------------~~~~~~~-------------~~~~~~~l~  116 (147)
                      .|..|...+....+.+...+                               .+.|..+             .....|.+.
T Consensus        83 ~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~L~I~  162 (384)
T 3kld_A           83 TNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIA  162 (384)
T ss_dssp             EETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTCCEEES
T ss_pred             EcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCCcEEEe
Confidence            99766532223333332211                               1222211             123468889


Q ss_pred             ecCCCCCeEEEEEeecCCCCC
Q psy7616         117 KVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       117 ~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      +++.+|+|.|+|.|.|..|..
T Consensus       163 ~v~~~D~G~Y~C~a~n~~~~~  183 (384)
T 3kld_A          163 KVEKSDVGNYTCVVTNTVTNH  183 (384)
T ss_dssp             SCCGGGCEEEEEEEEETTTTE
T ss_pred             ecCHHHCceEEEEEecccccc
Confidence            999999999999999998754

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.73  E-value=1.2e-16  Score=98.05  Aligned_cols=79  Identities=20%  Similarity=0.338  Sum_probs=56.1

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecC-CCCCCCcee-eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKD-SSLPSGEKS-LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~-~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ..+..|+.+.|.|.+.|.|.+.+.|++.. ..+...... .....|.|.+++..|+|.|.|.+.+..+. .+..+.|.|.
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~-~~~~~~l~V~   89 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRK-LEKGIQVEIY   89 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCccceEEEcCCccEEEECcCCHHHCEEEEEEEEECCce-EeeEEEEEEE
Confidence            34458999999999998898999999843 222111111 12346999999999999999999987654 3556666665


Q ss_pred             ee
Q psy7616          98 CK   99 (147)
Q Consensus        98 ~~   99 (147)
                      .+
T Consensus        90 ~~   91 (202)
T 1vca_A           90 SF   91 (202)
T ss_dssp             BC
T ss_pred             eC
Confidence            43

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.73  E-value=3.3e-17  Score=105.04  Aligned_cols=139  Identities=18%  Similarity=0.233  Sum_probs=91.6

Q ss_pred             EEeCCc-eEEcCCCCceEEeeCCeEEEEEeecCCCCCc-eEEEe-cCCCCCCCce--eeeccceEEEeecCCCCeEEEEE
Q psy7616           5 QMVPPS-IRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSK-KDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         5 ~~~~p~-~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~w~~-~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      +..+|. +...+.  ...+..|+.+.|.|.+.+.+.+. +.|++ ++..+.....  ......|.|.++...|+|.|.|.
T Consensus        85 V~~~~~~~~~~~~--~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  162 (289)
T 3ejj_X           85 VKDPAHSWNLLAQ--EVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCK  162 (289)
T ss_dssp             ECCSSCSEEESCS--EEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEE
T ss_pred             EeCCCcceecccc--eEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEE
Confidence            334454 344443  66888999999999998866655 99986 4444432222  23456799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEe----eee------------------------------cCCCCcc----c-------------
Q psy7616          80 ATNGVGDPVTVDMTLEVL----CKI------------------------------LPSGEKS----L-------------  108 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~----~~~------------------------------~~~~~~~----~-------------  108 (147)
                      +.+......+..+.+.+.    .+|                              .+.|..+    .             
T Consensus       163 a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~  242 (289)
T 3ejj_X          163 TMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYK  242 (289)
T ss_dssp             EEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEE
T ss_pred             EEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEE
Confidence            984322212334444443    111                              1222222    0             


Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|.. +.++.|.+
T Consensus       243 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~s~~L~~  279 (289)
T 3ejj_X          243 KVRALSLNAVDFQDAGIYSCVASNDVGTR-TATMNFQV  279 (289)
T ss_dssp             EEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEEEC
T ss_pred             eeEEEEEEeecccCCEEEEEEEEcCCCCc-cccEEEEE
Confidence            02356778899999999999999999988 77777764

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.72  E-value=2.8e-17  Score=106.70  Aligned_cols=137  Identities=15%  Similarity=0.237  Sum_probs=91.7

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCCcee--------eeccceEEEeecCCCCeEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKS--------LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+|.+...+.  ...+..++...+.|... +.|.+.+.|++++..+......        ...+.|.+......|.|.|.
T Consensus       116 ~~P~~~~~~~--~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~  193 (313)
T 4fqp_A          116 AKPQNTAEVQ--KVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVT  193 (313)
T ss_dssp             BCCEEEEEEC--CBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEE
T ss_pred             cCCcceeccc--ceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeecccccccceeeeecccccccCeeEE
Confidence            4555554443  22456788888999764 6688899999998766432211        11235777888888999999


Q ss_pred             EEeecCCCCc-eEEeEEEEEeee------------------------------e-cCCCCcc---------ccCCceEEe
Q psy7616          78 CTATNGVGDP-VTVDMTLEVLCK------------------------------I-LPSGEKS---------LEGFSITLE  116 (147)
Q Consensus        78 C~~~~~~~~~-~~~~~~l~v~~~------------------------------~-~~~~~~~---------~~~~~~~l~  116 (147)
                      |.+.|..+.. ....+.+.+..+                              | .+.|..+         ..+..|.+.
T Consensus       194 C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~  273 (313)
T 4fqp_A          194 CKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIR  273 (313)
T ss_dssp             EEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEEC
T ss_pred             EEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEEC
Confidence            9999865432 122232222222                              2 1334433         234567889


Q ss_pred             ecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         117 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       117 ~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       274 ~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V  302 (313)
T 4fqp_A          274 PVDKPINTTLICNVTNALGAR-QAELTVQV  302 (313)
T ss_dssp             CCSSCCEEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             cCChhhCEEEEEEEEeCCCcE-EEEEEEEE
Confidence            999999999999999999987 77888877

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.72  E-value=4.4e-17  Score=103.51  Aligned_cols=134  Identities=21%  Similarity=0.285  Sum_probs=89.1

Q ss_pred             ceEEcCCCCceEEeeCCeEEEEEeec---CCCCCceEEEecCCCCCCC-------------------cee------eecc
Q psy7616          10 SIRTSPSNGQLTVRKGGTITLECKAS---GNPVPSIIWSKKDSSLPSG-------------------EKS------LEGF   61 (147)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~l~C~~~---~~~~~~v~w~~~~~~~~~~-------------------~~~------~~~~   61 (147)
                      .+...+.  .+.+..|+.+.|.|.+.   +.+.+.+.|++.+......                   ...      ....
T Consensus         7 ~v~~~~~--~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   84 (268)
T 3mj6_A            7 GLTVSSP--QLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDG   84 (268)
T ss_dssp             -----CC--EEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBC
T ss_pred             ccccCCC--ceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEE
Confidence            3444443  56889999999999986   5566779999976543211                   000      1226


Q ss_pred             ceEEEeecCCCCeEEEEEeecCCCCc-eEEeEEEEEee---------------------------eecCCCCcc------
Q psy7616          62 SITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVLC---------------------------KILPSGEKS------  107 (147)
Q Consensus        62 ~l~~~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v~~---------------------------~~~~~~~~~------  107 (147)
                      .|.|.+++..|+|.|.|.+.+..+.. ....+.+.+..                           .|.+.|...      
T Consensus        85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~  164 (268)
T 3mj6_A           85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTE  164 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSS
T ss_pred             EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCc
Confidence            79999999999999999998764433 23444444421                           112334321      


Q ss_pred             ---------------------------------ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 ---------------------------------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 ---------------------------------~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                                                       .....|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V  235 (268)
T 3mj6_A          165 EETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLES-RKTIVLHV  235 (268)
T ss_dssp             CEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             ceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceE-EEEEEEEE
Confidence                                             113467889999999999999999998876 77787776

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.72  E-value=5.3e-17  Score=106.36  Aligned_cols=136  Identities=19%  Similarity=0.245  Sum_probs=97.1

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeec-------CCCCCceEEEecCCCC--CCC---ceeeeccceEEEeecCCCCeE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKAS-------GNPVPSIIWSKKDSSL--PSG---EKSLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~-------~~~~~~v~w~~~~~~~--~~~---~~~~~~~~l~~~~~~~~~~g~   75 (147)
                      .|.+...+.  ...+..|+.+.|.|.+.       +.+.+.+.|++++..+  ...   ........|.|.+++..|+|.
T Consensus        18 ~p~~~~~~~--~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   95 (339)
T 3o4o_C           18 CRFRGRHYK--REFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGT   95 (339)
T ss_dssp             CEEEEECSC--CEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEE
T ss_pred             hHhhCcCce--EEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEE
Confidence            456666655  66899999999999987       7788899999998763  222   223456689999999999999


Q ss_pred             EEEEeecCCCCceEEeEEEEEeee------------------------------------ecCCCCcc------------
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLCK------------------------------------ILPSGEKS------------  107 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~~------------------------------------~~~~~~~~------------  107 (147)
                      |.|.+.+..+.. ...+.+.+..+                                    +.+.|.++            
T Consensus        96 Y~C~~~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~  174 (339)
T 3o4o_C           96 YVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFL  174 (339)
T ss_dssp             EECCEEETTEEE-EEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEE
T ss_pred             EEEEEECCcceE-EEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeE
Confidence            999999876542 44555555432                                    22233322            


Q ss_pred             --ccCCceEEeecCCCCCeEEEEEeecCCCCC---cCeeeEEEE
Q psy7616         108 --LEGFSITLEKVDRHQAGVYQCTATNGVGDP---VTVDMTLEV  146 (147)
Q Consensus       108 --~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~---~~~~~~l~V  146 (147)
                        .....|.+.+++.+|+|.|+|.|.|..|..   .+..+.|.|
T Consensus       175 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V  218 (339)
T 3o4o_C          175 SVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI  218 (339)
T ss_dssp             ECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEE
T ss_pred             EcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEE
Confidence              011368889999999999999999998753   244566655

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.72  E-value=7.8e-17  Score=101.29  Aligned_cols=83  Identities=23%  Similarity=0.363  Sum_probs=57.2

Q ss_pred             CCCCceEEeeCCeEEEEEeecC---CCCCceEEEecCCCCC-----------------------------C--Cce-ee-
Q psy7616          15 PSNGQLTVRKGGTITLECKASG---NPVPSIIWSKKDSSLP-----------------------------S--GEK-SL-   58 (147)
Q Consensus        15 ~~~~~~~~~~g~~~~l~C~~~~---~~~~~v~w~~~~~~~~-----------------------------~--~~~-~~-   58 (147)
                      .+...+.+..|+.+.|.|.+.+   .+.+.+.|++++....                             .  ... .. 
T Consensus         7 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~   86 (250)
T 2fbo_J            7 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASVAN   86 (250)
T ss_dssp             CSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEECSC
T ss_pred             cCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEecc
Confidence            3334668889999999999876   6788899999874420                             0  000 00 


Q ss_pred             -eccceEEEeecCCCCeEEEEEeecCCCCce----EEeEEEEEe
Q psy7616          59 -EGFSITLEKVDRHQAGVYQCTATNGVGDPV----TVDMTLEVL   97 (147)
Q Consensus        59 -~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~----~~~~~l~v~   97 (147)
                       ....|.|.+++..|+|.|.|.+.+..+...    ...+.|.|.
T Consensus        87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~  130 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVT  130 (250)
T ss_dssp             TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEET
T ss_pred             CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEe
Confidence             124799999999999999999998655321    234555554

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.72  E-value=1.7e-16  Score=114.45  Aligned_cols=137  Identities=24%  Similarity=0.432  Sum_probs=95.2

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCcee------eeccceEEEeecCCCCeEEE
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKS------LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~g~y~   77 (147)
                      +..+|.+...... ...+..|+.+.|.|.+.+.+.+ .+.|++++..+......      .....|.|.++...|+|.|+
T Consensus       615 v~~~p~~~~~~~~-~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  693 (816)
T 3dmk_A          615 VMVLPRIIPFAFE-EGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFT  693 (816)
T ss_dssp             EECCCCCBCCCCC-SSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEE
T ss_pred             EecCCcccccccc-ccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEE
Confidence            3445554432222 3467899999999998765554 89999999887533211      12356999999999999999


Q ss_pred             EEeecCCCCceEEeEEEEEeeee-----------------------------cCCCCcc------------------ccC
Q psy7616          78 CTATNGVGDPVTVDMTLEVLCKI-----------------------------LPSGEKS------------------LEG  110 (147)
Q Consensus        78 C~~~~~~~~~~~~~~~l~v~~~~-----------------------------~~~~~~~------------------~~~  110 (147)
                      |.+.|..+.. ...+.+.|..+|                             .+.|.++                  ...
T Consensus       694 C~a~N~~g~~-~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~  772 (816)
T 3dmk_A          694 CHARNLAGHQ-QFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEE  772 (816)
T ss_dssp             EEEECSSCEE-EEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECSSSTTCCBCCCCBTTEEEET
T ss_pred             EEEEeCCccE-EEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCCCCCccccccccCCCEEecC
Confidence            9999987764 555555555443                             3334332                  022


Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      +.|.+.+++.+|+|.|+|.|.|..|.. ...+.+
T Consensus       773 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~v~~  805 (816)
T 3dmk_A          773 GTLHVDNIQKTNEGYYLCEAINGIGSG-LSAVIM  805 (816)
T ss_dssp             TEEEECSCCGGGCEEEEEEEECSSSSC-EEEEEE
T ss_pred             CEEEECcCChhhCeEEEEEEEeCCCCC-cEEEEE
Confidence            357789999999999999999999988 444433

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.72  E-value=1.1e-16  Score=100.75  Aligned_cols=136  Identities=17%  Similarity=0.129  Sum_probs=88.9

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC----ceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+|.+...|..   .+..|++++|.|.+.+ +...+.|++++..+...    ........|.|.+++..|+|.|.|.+.+
T Consensus         6 ~kP~i~~~P~~---~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   81 (242)
T 1p6f_A            6 PKPFIWAEPHF---MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV   81 (242)
T ss_dssp             CCCEEEEESCS---EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeeCCC---ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEec
Confidence            46777777753   7899999999999865 45689999988654210    0112345789999999999999999876


Q ss_pred             CCCC-ceEEeEEEEEee---eecC---------------------------CCCcc-----------ccCCceEEeecCC
Q psy7616          83 GVGD-PVTVDMTLEVLC---KILP---------------------------SGEKS-----------LEGFSITLEKVDR  120 (147)
Q Consensus        83 ~~~~-~~~~~~~l~v~~---~~~~---------------------------~~~~~-----------~~~~~~~l~~~~~  120 (147)
                      ..+. ..+..+.+.|..   .|.+                           .|.++           .....+.|.+++.
T Consensus        82 ~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~  161 (242)
T 1p6f_A           82 GELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTT  161 (242)
T ss_dssp             TTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTSCSEEEEEECSSSCEEEEEECSSEEEEEEEECCG
T ss_pred             CCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCCCCEEEEEECCCccCccccCCCceEEEEeCCCcc
Confidence            4321 113334444431   1111                           11111           0122466689999


Q ss_pred             CCCeEEEEEeecCC--CCCcCeeeEEEE
Q psy7616         121 HQAGVYQCTATNGV--GDPVTVDMTLEV  146 (147)
Q Consensus       121 ~d~G~Y~C~a~n~~--g~~~~~~~~l~V  146 (147)
                      +|+|.|+|.|.|..  ....+..+.|.|
T Consensus       162 ~d~G~Y~C~a~n~~~~~s~~S~~~~l~V  189 (242)
T 1p6f_A          162 AHRGTYRCFGSYNNHAWSFPSEPVKLLV  189 (242)
T ss_dssp             GGCEEEEEEEEEETTEECCCCCCEEEEE
T ss_pred             ccCEEEEEEEECCCCcccCCCCCEEEEE
Confidence            99999999999874  333466777776

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.72  E-value=1.9e-16  Score=100.08  Aligned_cols=123  Identities=15%  Similarity=0.268  Sum_probs=87.2

Q ss_pred             eEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEee
Q psy7616          20 LTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~   98 (147)
                      ..+..|+.+.|.|.+ .+.+.+.+.|++++..+..   ......|.|.+++..|.|.|.|.+.+..+. .+..+.+.+..
T Consensus        92 ~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~-~~~~~~l~V~~  167 (262)
T 3rjd_A           92 RVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKF---FHWNSNLTILKTNISHNGTYHCSGMGKHRY-TSAGISVTVKE  167 (262)
T ss_dssp             SEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEE---EEECCCEEESSCCGGGCEEEEEEEESSSEE-EEECEEEEEEC
T ss_pred             eEEecCCeEEEEEEccCCCCCceEEEEECCccccc---cCCCCeEEEEECChhhCEEEEEEEeCCCCc-cccceEEEecc
Confidence            367899999999998 6667788999998866532   223567899999999999999999987643 34555555542


Q ss_pred             ---eecCC---------------------------------CCcc-------ccCCceEEeecCCCCCeEEEEEeecCCC
Q psy7616          99 ---KILPS---------------------------------GEKS-------LEGFSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus        99 ---~~~~~---------------------------------~~~~-------~~~~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                         +|.+.                                 |..+       .....|.+.+++.+|+|.|+|.|.|..|
T Consensus       168 ~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~G  247 (262)
T 3rjd_A          168 LFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDG  247 (262)
T ss_dssp             SSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEEEEEETTEEEEEEESCCEEEESSCCGGGCEEEEEEEEETTS
T ss_pred             CCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCcEecccCCCceEEEEEechhhCeEEEEEEEcccC
Confidence               11110                                 1111       1223466688999999999999999999


Q ss_pred             CC--cCeeeEEEE
Q psy7616         136 DP--VTVDMTLEV  146 (147)
Q Consensus       136 ~~--~~~~~~l~V  146 (147)
                      ..  .+..+.|.|
T Consensus       248 ~~~~~s~~~~l~V  260 (262)
T 3rjd_A          248 NVLKRSPELELQV  260 (262)
T ss_dssp             SCEEECCCEEECE
T ss_pred             ceEEecCCeEEEE
Confidence            74  345566655

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.72  E-value=4.4e-17  Score=105.41  Aligned_cols=137  Identities=15%  Similarity=0.206  Sum_probs=91.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCCce--eee-----ccceEEEeecCCCCeEEEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEK--SLE-----GFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~--~~~-----~~~l~~~~~~~~~~g~y~C~   79 (147)
                      +|.+...+.. ...+..|+.+.|.|.+. +.|.+.+.|++++..+.....  ...     ...|.|.++...|+|.|.|.
T Consensus       106 ~p~~~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  184 (312)
T 2y23_A          106 FPTVPVKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQ  184 (312)
T ss_dssp             SCBCCEEEEE-EEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEE
T ss_pred             CCccccccCC-ceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEE
Confidence            4544433221 45788999999999998 778899999999887654322  111     12389999999999999998


Q ss_pred             eecCCCCce--------------------------------------------EEeEEEEEe--eee-cCCCCcc-----
Q psy7616          80 ATNGVGDPV--------------------------------------------TVDMTLEVL--CKI-LPSGEKS-----  107 (147)
Q Consensus        80 ~~~~~~~~~--------------------------------------------~~~~~l~v~--~~~-~~~~~~~-----  107 (147)
                      +.+......                                            ...+...+.  .+| .+.|..+     
T Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~  264 (312)
T 2y23_A          185 LQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREIS  264 (312)
T ss_dssp             EESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEEEE
T ss_pred             EEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECC
Confidence            865422210                                            000001111  123 4556544     


Q ss_pred             -------ccC-CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 -------LEG-FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 -------~~~-~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                             ..+ ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       265 ~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~i  310 (312)
T 2y23_A          265 VDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-KSRLKLVD  310 (312)
T ss_dssp             EECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCE-EEEEEECS
T ss_pred             CCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCce-eeeeEEEe
Confidence                   111 467889999999999999999999988 77777765

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.71  E-value=2e-16  Score=105.38  Aligned_cols=132  Identities=20%  Similarity=0.267  Sum_probs=93.9

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecC-CCCCceEEEecCCCCCCCc----eeeeccceEEEeecCCCCeEEEE
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+..+|.|...|.  ...+..|+.+.|.|.+.+ .+.+.+.|++++..+....    .......|.|.++...|+|.|.|
T Consensus         2 ~v~~~P~~~~~p~--~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   79 (395)
T 1bih_A            2 PVDKYPVLKDQPA--EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQC   79 (395)
T ss_dssp             ---CCCEECCCCS--EEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEE
T ss_pred             CcCCCCEeecCCC--ceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCceEEEecCCCCCCcEEEE
Confidence            4567888877765  668899999999999988 7888999999998875432    12245679999999999999999


Q ss_pred             EeecCCCCceEEeEEEEEeee------------------------------ecCCCCcc-------------------cc
Q psy7616          79 TATNGVGDPVTVDMTLEVLCK------------------------------ILPSGEKS-------------------LE  109 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~l~v~~~------------------------------~~~~~~~~-------------------~~  109 (147)
                      .+.+..+...+..+.+.+...                              +.+.|..+                   ..
T Consensus        80 ~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~  159 (395)
T 1bih_A           80 FAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGP  159 (395)
T ss_dssp             EEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECT
T ss_pred             EEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEEcC
Confidence            999876543222233332211                              12223221                   12


Q ss_pred             CCceEEeecCCCCCe---EEEEEeecCCCCC
Q psy7616         110 GFSITLEKVDRHQAG---VYQCTATNGVGDP  137 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G---~Y~C~a~n~~g~~  137 (147)
                      .+.+.+.+++.+|+|   .|+|.|.|..|..
T Consensus       160 ~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~  190 (395)
T 1bih_A          160 DGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE  190 (395)
T ss_dssp             TSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             CCcEEEEEEeeccCCCceEEEEEEEecccce
Confidence            335778999999999   9999999999875

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.71  E-value=4.6e-16  Score=108.49  Aligned_cols=140  Identities=21%  Similarity=0.290  Sum_probs=94.4

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCce----EEEe--cCC--CCCC---------Cce--ee---ec
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSI----IWSK--KDS--SLPS---------GEK--SL---EG   60 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v----~w~~--~~~--~~~~---------~~~--~~---~~   60 (147)
                      +.+..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+    .|++  ++.  .+..         ..+  ..   ..
T Consensus       326 l~V~~~p~~~~~~~--~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~  403 (585)
T 2ocw_A          326 LFVNEESTIPRSPT--VVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGN  403 (585)
T ss_pred             EEEecccccccCCc--ceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCC
Confidence            34455666655544  557889999999999998888876    7998  765  3321         001  11   11


Q ss_pred             c--ceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEeee---------------------------------ecCCCC
Q psy7616          61 F--SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK---------------------------------ILPSGE  105 (147)
Q Consensus        61 ~--~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~---------------------------------~~~~~~  105 (147)
                      .  .|.|.+++..|+|.|.|.+ +..+.. ...+.|.|...                                 |.+.|.
T Consensus       404 g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~-~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~  481 (585)
T 2ocw_A          404 GTFTVILNQLTSRDAGFYWCLT-NGDTLW-RTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWN  481 (585)
T ss_pred             cEEEEEECCCChhhCEEEEEcc-cCCCcc-ceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEe
Confidence            2  3889999999999999998 655543 44455555421                                 112233


Q ss_pred             ccc--------c------------C--CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         106 KSL--------E------------G--FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       106 ~~~--------~------------~--~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+.        .            +  ..|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus       482 k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V  544 (585)
T 2ocw_A          482 NTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAV  544 (585)
T ss_pred             ecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEE
Confidence            220        0            1  257778999999999999999999987555577776

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.71  E-value=7.5e-17  Score=107.13  Aligned_cols=128  Identities=23%  Similarity=0.331  Sum_probs=90.3

Q ss_pred             eCCceEEcCCCCceEE---eeCCeEEEEEeecCCCCCceEEEecCCCCCCC---ceeeeccceEEEeecC-CCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTV---RKGGTITLECKASGNPVPSIIWSKKDSSLPSG---EKSLEGFSITLEKVDR-HQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~---~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~---~~~~~~~~l~~~~~~~-~~~g~y~C~   79 (147)
                      .+|.|...|..  ..+   ..|+.+.|.|.+.+.|.+.+.|++++..+...   ........|.|.++.. .|+|.|.|.
T Consensus         3 ~~P~~~~~p~~--~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~   80 (382)
T 1cs6_A            3 YGPVFEEQPAH--TLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCV   80 (382)
T ss_dssp             EEEEEEECCCC--EEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEE
T ss_pred             CCCEEEECCCc--EEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCCeEEEecccccccCEEEEEE
Confidence            47788887764  344   68999999999988888999999998876532   2233456788998886 999999999


Q ss_pred             eecCCCCceEEeEEEEEeeeecC-------------------------------CCCcc---------------ccCCce
Q psy7616          80 ATNGVGDPVTVDMTLEVLCKILP-------------------------------SGEKS---------------LEGFSI  113 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~-------------------------------~~~~~---------------~~~~~~  113 (147)
                      +.+..+...+..+.+.+...+.+                               .|..+               .....|
T Consensus        81 a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L  160 (382)
T 1cs6_A           81 ATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL  160 (382)
T ss_dssp             EEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCE
T ss_pred             EEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEecCceEE
Confidence            99876543233344444332221                               12111               112457


Q ss_pred             EEeecCCCCCeEEEEEeecCCCC
Q psy7616         114 TLEKVDRHQAGVYQCTATNGVGD  136 (147)
Q Consensus       114 ~l~~~~~~d~G~Y~C~a~n~~g~  136 (147)
                      .+.+++.+|+|.|+|.|.|..|.
T Consensus       161 ~i~~~~~~d~G~Y~C~~~n~~g~  183 (382)
T 1cs6_A          161 YIAKTEASDLGNYSCFATSHIDF  183 (382)
T ss_dssp             EESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEEeeCcccCeeEEEEEEEcccc
Confidence            77899999999999999998753

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.70  E-value=6.4e-18  Score=103.82  Aligned_cols=119  Identities=18%  Similarity=0.299  Sum_probs=80.2

Q ss_pred             eeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeE----------
Q psy7616          23 RKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM----------   92 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~----------   92 (147)
                      ..|+.++|.|.+   +.+.+.|++++..+...  ......|.|.+++..|+|.|.|.+.+..........          
T Consensus        16 ~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~--~~~~~~L~i~~v~~~DsG~Y~C~~~~~~s~~~~v~v~~~~~~~~~~   90 (204)
T 1sy6_A           16 QEDGSVLLTCDA---EAKNITWFKDGKMIGFL--TEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKK   90 (204)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEEEEE--ESSCCCEEEEEGGGCCEEEEEEESSSSCCCCEEEEEEC--------
T ss_pred             cCCCeEEEEEcC---CCCEEEEEECCEECCCC--CCCCCeEEeCCCCcCCCEEEEEEecCCCCeeEEEEEEEeccccccc
Confidence            579999999988   67899999998766421  124567999999999999999997543211100000          


Q ss_pred             ---------------------------------------EEEEe----eeecCCCCcc--------------ccCCceEE
Q psy7616          93 ---------------------------------------TLEVL----CKILPSGEKS--------------LEGFSITL  115 (147)
Q Consensus        93 ---------------------------------------~l~v~----~~~~~~~~~~--------------~~~~~~~l  115 (147)
                                                             .+.+.    ..|.+.|..+              ..+..|.|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v~~~G~~v~L~C~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I  170 (204)
T 1sy6_A           91 DAAKKDDAKKDDAKKDGSDGNEEMGGITQTPYKVSISGTTVILTCPQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSL  170 (204)
T ss_dssp             ----------------------------CCCCEEEEETTEEEEECSCCCSSCEEEEETTEEESCCTTCTTEEEETTEEEE
T ss_pred             cccccccccccccccccccccccccceecCCceeeecCCcEEEEcCCCCCCceEEEECCEECCCccCCceEecCCCEEEE
Confidence                                                   00011    1122333332              12456777


Q ss_pred             eec-CCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         116 EKV-DRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       116 ~~~-~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .++ +.+|+|.|+|.|.|..|...+..+.|.|
T Consensus       171 ~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~~  202 (204)
T 1sy6_A          171 KEFSELEQSGYYVCYPRGSKPEDANFYLYLRA  202 (204)
T ss_dssp             TTCCHHHHCEEEEEEETTSCGGGSSCEEEEEE
T ss_pred             eeCCccccCEEEEEEeccCCCCceeEEEEEEE
Confidence            899 9999999999999999975567777765

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.70  E-value=7.6e-17  Score=89.32  Aligned_cols=91  Identities=27%  Similarity=0.505  Sum_probs=72.4

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee-----eccceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL-----EGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .||.|...+.  .+.+..|+.+.|.|.+.|.|.+.+.|++++..+.......     ....|.|.++...|+|.|.|.+.
T Consensus        12 ~pP~f~~~p~--~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   89 (107)
T 3knb_B           12 SPPCFLRFPR--PVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRAR   89 (107)
T ss_dssp             EEEEEEECCC--CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEeCCC--cEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEE
Confidence            4788877765  5689999999999999999999999999998876443321     23369999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeee
Q psy7616          82 NGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~  100 (147)
                      |..|.. +..+.|.|..+|
T Consensus        90 N~~G~~-~~~~~l~V~~pP  107 (107)
T 3knb_B           90 NAAGEA-YAAAAVTVLEPP  107 (107)
T ss_dssp             ETTEEE-EEEEEEEEEC--
T ss_pred             ECCCEE-EEEEEEEEEcCC
Confidence            988774 667777776654

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.70  E-value=8.7e-16  Score=93.93  Aligned_cols=74  Identities=15%  Similarity=0.276  Sum_probs=55.7

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce------eeeccceEEEeecCCCCeEEEEE
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      ..+|.+...|.   ..+..|++++|.|.+.+ +.+.+.|++++..+.....      ......|.|.+++..|+|.|.|.
T Consensus         6 ~~~P~i~~~p~---~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~   81 (201)
T 1nkr_A            6 HRKPSLLAHPG---PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCY   81 (201)
T ss_dssp             -CCCEEEEESC---SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCeEEEEcC---CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEe
Confidence            35677777664   37889999999999874 6778999999876632110      12345789999999999999999


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      +.+.
T Consensus        82 a~~~   85 (201)
T 1nkr_A           82 GSVT   85 (201)
T ss_dssp             EEBT
T ss_pred             EecC
Confidence            9653

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.70  E-value=9.3e-17  Score=108.46  Aligned_cols=127  Identities=20%  Similarity=0.171  Sum_probs=83.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee----eccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL----EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                      .+.+..|+.+.|.|.+.+.|.+.+.|++++..+.......    ....|.|.+++..|+|.|.|.+.|..+.. ...+.|
T Consensus        57 ~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l  135 (423)
T 3qs7_E           57 AVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY-TILFTV  135 (423)
T ss_dssp             EEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEE-EEEEEE
T ss_pred             cEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcE-EEEEEE
Confidence            5689999999999999998889999999886654322111    12358899999999999999999987663 556666


Q ss_pred             EEeeeecC----------------------------CCCcccc-------C--CceEE--eecCCCCCeEEEEEeecCCC
Q psy7616          95 EVLCKILP----------------------------SGEKSLE-------G--FSITL--EKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus        95 ~v~~~~~~----------------------------~~~~~~~-------~--~~~~l--~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      .|..+|.+                            .|.++..       .  ..+.-  ..++..|+|.|+|.|.|..|
T Consensus       136 ~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G  215 (423)
T 3qs7_E          136 SIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELG  215 (423)
T ss_dssp             EEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSC
T ss_pred             EEecCccccccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCC
Confidence            66532221                            2221100       0  00000  11257899999999999999


Q ss_pred             CCcCeeeEEEE
Q psy7616         136 DPVTVDMTLEV  146 (147)
Q Consensus       136 ~~~~~~~~l~V  146 (147)
                      ...+..+.|.|
T Consensus       216 ~~~~~~~~l~V  226 (423)
T 3qs7_E          216 RECTRLFTIDL  226 (423)
T ss_dssp             EEEEECEEEES
T ss_pred             CcceeeEEEEE
Confidence            77444566665

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.70  E-value=2.5e-16  Score=97.41  Aligned_cols=127  Identities=18%  Similarity=0.284  Sum_probs=80.7

Q ss_pred             CCceEEeeCCeEEEEEeecCCC-----CCceEEEecCCCC--------------CC--Cce-ee------eccceEEEee
Q psy7616          17 NGQLTVRKGGTITLECKASGNP-----VPSIIWSKKDSSL--------------PS--GEK-SL------EGFSITLEKV   68 (147)
Q Consensus        17 ~~~~~~~~g~~~~l~C~~~~~~-----~~~v~w~~~~~~~--------------~~--~~~-~~------~~~~l~~~~~   68 (147)
                      ...+.+..|+.+.|.|.+.+.+     ...+.|++++..+              ..  ... ..      ....|.|.++
T Consensus         8 ~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v   87 (222)
T 3sbw_C            8 KDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDV   87 (222)
T ss_dssp             CSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSC
T ss_pred             CccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCc
Confidence            3356788999999999976555     3479999964110              00  010 11      1237999999


Q ss_pred             cCCCCeEEEEEeecCCCCceEEeEEEEEeeeecCCCCcc----ccCCceEE-----------------------------
Q psy7616          69 DRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKS----LEGFSITL-----------------------------  115 (147)
Q Consensus        69 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~~----~~~~~~~l-----------------------------  115 (147)
                      +..|+|.|.|.+.+ .+. ....+.|.|..++..+....    ..|..+.|                             
T Consensus        88 ~~~D~G~Y~C~~~~-~~~-~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~  165 (222)
T 3sbw_C           88 KLQDAGVYRCMISY-GGA-DYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTT  165 (222)
T ss_dssp             CGGGCEEEEEEEES-SSE-EEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEE
T ss_pred             ccccCeEEEEEEEe-CCC-ceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceE
Confidence            99999999999988 332 34455565554332211000    11111111                             


Q ss_pred             --------------eecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         116 --------------EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       116 --------------~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                                    ..++.+|.|.|+|.|.|..|.. +..+.|.|
T Consensus       166 ~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~-~~~~~l~v  209 (222)
T 3sbw_C          166 NSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEE-NHTAELVI  209 (222)
T ss_dssp             ECC----CEEEEEEEEEECCTTCEEEEEEEETTTTE-EEEEEEEC
T ss_pred             EEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccce-eeEEEEEe
Confidence                          2466799999999999999987 77777765

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.70  E-value=2.1e-17  Score=107.11  Aligned_cols=134  Identities=15%  Similarity=0.257  Sum_probs=92.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CCCceEEEecCCCCCCCce---eeeccceEEEeecCCCCeEEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEK---SLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+|.|... .  ...+..|+.+.|.|.+.+. +.+.+.|++++..+.....   ......|.|.+++..|+|.|.|.+.+
T Consensus         6 ~~P~~~~~-~--~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   82 (317)
T 2y25_A            6 TGPHFVEY-L--SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKD   82 (317)
T ss_dssp             SCCEEEEE-E--EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEES
T ss_pred             CCCcEeee-e--eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEEC
Confidence            46777633 2  4688999999999998876 6789999999877653322   12345799999999999999999988


Q ss_pred             CCCCceEEeEEEEEe---------------------------------------eeecCCCCcc-------------ccC
Q psy7616          83 GVGDPVTVDMTLEVL---------------------------------------CKILPSGEKS-------------LEG  110 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~---------------------------------------~~~~~~~~~~-------------~~~  110 (147)
                      ..+.. ...+.+.+.                                       ..+.+.|..+             ..+
T Consensus        83 ~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~  161 (317)
T 2y25_A           83 DRGKD-KSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTG  161 (317)
T ss_dssp             SSCEE-EEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECS
T ss_pred             CCCcE-EEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccC
Confidence            76542 222222111                                       1223344333             011


Q ss_pred             --CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616         111 --FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE  145 (147)
Q Consensus       111 --~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~  145 (147)
                        ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.
T Consensus       162 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~  197 (317)
T 2y25_A          162 EQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLS  197 (317)
T ss_dssp             SEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEEC
T ss_pred             CEEEEEECcCCcccCeeEEEEEEeCCceE-EEEEEEe
Confidence              127889999999999999999998876 5555554

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.69  E-value=1.5e-16  Score=106.18  Aligned_cols=132  Identities=23%  Similarity=0.360  Sum_probs=92.2

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----e-eeeccceEEE----eecCCCCeE
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----K-SLEGFSITLE----KVDRHQAGV   75 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~-~~~~~~l~~~----~~~~~~~g~   75 (147)
                      +..+|.+...+.. ...+..|+.+.|.|.+.+.|.+.+.|++++..+....    . ......+.+.    ++...|+|.
T Consensus        13 ~~~~P~i~~~~~~-~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~l~i~~~~~~~~~~D~G~   91 (404)
T 3p3y_A           13 LTQPPTITKQSAK-DHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGE   91 (404)
T ss_dssp             CCCCCCEEEECCT-TCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCCSSSCCCBCCCTTTCCTTSSCEE
T ss_pred             ccCCCcccccCCc-cEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEecCCceEEEEeccCCCCccCCEE
Confidence            3467888765443 5588899999999999988999999999987664211    1 1133445553    677899999


Q ss_pred             EEEEeecCCCCceEEeEEEEEeeeecCCCCc-------------------------------c-------------ccCC
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLCKILPSGEK-------------------------------S-------------LEGF  111 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~~~~~~~~~-------------------------------~-------------~~~~  111 (147)
                      |.|.+.+..+...+..+.+.+..+|.+....                               +             ...+
T Consensus        92 Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~  171 (404)
T 3p3y_A           92 YQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNG  171 (404)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTS
T ss_pred             EEEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCC
Confidence            9999999877654456667666544332111                               0             1123


Q ss_pred             ceEEeecCCCC-CeEEEEEeecCCCCC
Q psy7616         112 SITLEKVDRHQ-AGVYQCTATNGVGDP  137 (147)
Q Consensus       112 ~~~l~~~~~~d-~G~Y~C~a~n~~g~~  137 (147)
                      .+.+.+++.+| +|.|+|.|.|..|..
T Consensus       172 ~l~i~~v~~~d~~G~Y~C~a~n~~~~~  198 (404)
T 3p3y_A          172 DLYFSNVMLQDMQTDYSCNARFHFTHT  198 (404)
T ss_dssp             CEEESSCCSGGGSSCBEEEEECTTTCC
T ss_pred             cEEEEeeeeccCCcceEEEEEeccccc
Confidence            56668899999 599999999998764

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.69  E-value=2.7e-16  Score=102.00  Aligned_cols=126  Identities=18%  Similarity=0.230  Sum_probs=89.6

Q ss_pred             eEEeeCCeEEEEEee------cCCCCCceEEEecCCCCCCC--ceeeeccceEEEeecCCCCeEEEEEee-cCCCCce--
Q psy7616          20 LTVRKGGTITLECKA------SGNPVPSIIWSKKDSSLPSG--EKSLEGFSITLEKVDRHQAGVYQCTAT-NGVGDPV--   88 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~------~~~~~~~v~w~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~-~~~~~~~--   88 (147)
                      ..+..|+.+.|.|.+      .+.|.+.+.|++++..+...  ........|.|.++...|+|.|.|.+. +..+...  
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~  192 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPI  192 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceehhCcEEEEEEEcCCCCcEEEE
Confidence            367789999999997      77888999999999877432  223456689999999999999999998 5555432  


Q ss_pred             EEeEEEEEe-----eee------------------------------cCCCCcc----ccC-------------------
Q psy7616          89 TVDMTLEVL-----CKI------------------------------LPSGEKS----LEG-------------------  110 (147)
Q Consensus        89 ~~~~~l~v~-----~~~------------------------------~~~~~~~----~~~-------------------  110 (147)
                      ...+.+.+.     .+|                              .+.|..+    ...                   
T Consensus       193 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~  272 (315)
T 1itb_B          193 TRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRR  272 (315)
T ss_dssp             EEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGG
T ss_pred             EEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCce
Confidence            122222222     111                              1222222    010                   


Q ss_pred             ----CceEEeecCCCC-CeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 ----FSITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ----~~~~l~~~~~~d-~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                          ..|.+.+++.+| +|.|+|.|.|..|.. +..+.|.|
T Consensus       273 ~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~l~v  312 (315)
T 1itb_B          273 STLITVLNISEIESRFYKHPFTCFAKNTHGID-AAYIQLIY  312 (315)
T ss_dssp             EEEEEEEEESSCCGGGGTSCEEEEEECTTCCE-EEEEEEEC
T ss_pred             eEEEEEEEEeecCHHHcCCceEEEEecCCCce-eEEEEEEe
Confidence                157778999999 999999999999988 77887765

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.69  E-value=1.7e-16  Score=103.75  Aligned_cols=124  Identities=20%  Similarity=0.246  Sum_probs=88.5

Q ss_pred             EeeCCeEEEEEeecCCC-CCceEEEecCCCCCC--CceeeeccceEEEeecCCCCeEEEEEeecC--CCCc-e--EEeEE
Q psy7616          22 VRKGGTITLECKASGNP-VPSIIWSKKDSSLPS--GEKSLEGFSITLEKVDRHQAGVYQCTATNG--VGDP-V--TVDMT   93 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~~-~~~v~w~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~--~~~~-~--~~~~~   93 (147)
                      +..|+.+.|.|.+.+.| .+.+.|++++..+..  ......+..|.|.++...|+|.|.|.+.|.  .+.. .  +..+.
T Consensus       140 ~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~  219 (329)
T 3oq3_B          140 THDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKI  219 (329)
T ss_dssp             SSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEE
T ss_pred             EeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEE
Confidence            45699999999999988 899999999987742  222334678999999999999999999975  3322 1  12244


Q ss_pred             EEEeeee------------------------------------cCCCCccc--------------------cCCceEEee
Q psy7616          94 LEVLCKI------------------------------------LPSGEKSL--------------------EGFSITLEK  117 (147)
Q Consensus        94 l~v~~~~------------------------------------~~~~~~~~--------------------~~~~~~l~~  117 (147)
                      +.+..+|                                    .+.|..+.                    ....|.+.+
T Consensus       220 l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~  299 (329)
T 3oq3_B          220 LTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFEN  299 (329)
T ss_dssp             EEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESS
T ss_pred             EEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEe
Confidence            4443211                                    11343320                    123477789


Q ss_pred             cCCCCCe-EEEEEeecCCCCCcCeeeEEEE
Q psy7616         118 VDRHQAG-VYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       118 ~~~~d~G-~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ++.+|+| .|+|.|.|..|.. +..++|.|
T Consensus       300 v~~~D~G~~Y~C~a~N~~G~~-~~~~~l~v  328 (329)
T 3oq3_B          300 VTEEYIGNTYTCRGHNYYFDK-TLTTTVVL  328 (329)
T ss_dssp             CCGGGTTCEEEEEEECSSCEE-EEEEEEEE
T ss_pred             ccHHHCCCcEEEEEEecCCce-EEEEEEEe
Confidence            9999999 9999999999988 77777765

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.69  E-value=2.2e-15  Score=106.22  Aligned_cols=125  Identities=21%  Similarity=0.342  Sum_probs=89.6

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee---eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      .+..|+.+.|.|.+.+.+ +.+.|++++..+......   ..+..|.|.++...|+|.|.|.+.|..+...+..+.+.+.
T Consensus       300 ~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  378 (642)
T 1e07_A          300 PVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVL  378 (642)
T ss_pred             eEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeCCCCEEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEE
Confidence            556688899999998865 689999999887543322   2356799999999999999999999877644555666665


Q ss_pred             eeecCC------------------------------CCcc----ccCCceEEeecCCCCCeEEEEEeecCCCCC-cCeee
Q psy7616          98 CKILPS------------------------------GEKS----LEGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDM  142 (147)
Q Consensus        98 ~~~~~~------------------------------~~~~----~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~  142 (147)
                      .+|...                              |..+    ..+..+.+.+++.+|+|.|+|.|.|..|.. .+..+
T Consensus       379 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~  458 (642)
T 1e07_A          379 YGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANNSASGHSRTTVK  458 (642)
T ss_pred             cCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCceEEEccCChhhCeEEEEEEEcCCCCCcccceE
Confidence            443321                              1111    233456678999999999999999999866 23334


Q ss_pred             EEEE
Q psy7616         143 TLEV  146 (147)
Q Consensus       143 ~l~V  146 (147)
                      .+.|
T Consensus       459 ~v~v  462 (642)
T 1e07_A          459 TITV  462 (642)
T ss_pred             EEEE
Confidence            4444

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.69  E-value=2.1e-16  Score=102.45  Aligned_cols=122  Identities=20%  Similarity=0.254  Sum_probs=83.6

Q ss_pred             eCCeEEEEEeecC----------CCCCceEEEecCCCCCCCceee-----eccceEEEeecCCCCeEEEEEeecCCCCce
Q psy7616          24 KGGTITLECKASG----------NPVPSIIWSKKDSSLPSGEKSL-----EGFSITLEKVDRHQAGVYQCTATNGVGDPV   88 (147)
Q Consensus        24 ~g~~~~l~C~~~~----------~~~~~v~w~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   88 (147)
                      .|+.+.+.|...+          .|.+.+.|++++..+.......     ....|.|.++...|+|.|.|.+.+..+.. 
T Consensus       112 ~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-  190 (317)
T 2y25_A          112 SATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-  190 (317)
T ss_dssp             CBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEE-
T ss_pred             cCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceE-
Confidence            4556666666544          5788999999998875433211     12348999999999999999999865542 


Q ss_pred             EEeEEEEE--------------------------------------------------eeeecCCCCcc-----------
Q psy7616          89 TVDMTLEV--------------------------------------------------LCKILPSGEKS-----------  107 (147)
Q Consensus        89 ~~~~~l~v--------------------------------------------------~~~~~~~~~~~-----------  107 (147)
                      ...+.+.+                                                  ..+|.+.|..+           
T Consensus       191 ~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~  270 (317)
T 2y25_A          191 QKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCN  270 (317)
T ss_dssp             EEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEE
T ss_pred             EEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEE
Confidence            22222211                                                  11233445433           


Q ss_pred             --cc-C--CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 --LE-G--FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 --~~-~--~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                        .. +  ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus       271 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  314 (317)
T 2y25_A          271 LKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSE-TSDFTVSVF  314 (317)
T ss_dssp             ECCBTTTEEEEEEBSCCSTTCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEcCCCEEEEEECCCCHHHCEEEEEEEEeCCCeE-EEEEEEEEE
Confidence              01 2  168889999999999999999999988 788888774

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.68  E-value=4.3e-16  Score=105.61  Aligned_cols=119  Identities=23%  Similarity=0.306  Sum_probs=76.7

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc---eEEeEEEEEe
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP---VTVDMTLEVL   97 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~---~~~~~~l~v~   97 (147)
                      .+..|+.+.|.|.+.  |.+.+.|  ++..+...   .....|.|..+...|.|.|.|.+.|..+..   ....+.+.+.
T Consensus       294 ~v~~G~~v~l~C~~~--p~p~i~W--~g~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~  366 (450)
T 1z7z_I          294 EVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL---GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL  366 (450)
T ss_dssp             EEETTCEEEEEEEC-----------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEE
T ss_pred             eEeCCCcEEEEEecC--CCCEeEE--CCEEcCCC---CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEe
Confidence            788999999999987  8889999  55555211   123478899999999999999998654422   1355667777


Q ss_pred             eeecCCCCc---c---ccCCceEE---------------------------eecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616          98 CKILPSGEK---S---LEGFSITL---------------------------EKVDRHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus        98 ~~~~~~~~~---~---~~~~~~~l---------------------------~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      .+|.+....   .   .+|..+.|                           .+++.+|+|.|+|.|.|..|.. +..+.|
T Consensus       367 ~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i~W~~~g~~~~~~g~~~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l  445 (450)
T 1z7z_I          367 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEV-TREVTV  445 (450)
T ss_dssp             EEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTTSCEECCGGGCEEEEEEEEETTEEE-EEEEEE
T ss_pred             cCCceeeccCCCceeEcCCCeEEEEEecccCCCCcEEEEECCcccCCCCCeEeEehhhCeEEEEEEEeCCCce-eEEEEE
Confidence            777664432   1   23333332                           3688899999999999999988 888888


Q ss_pred             EEC
Q psy7616         145 EVL  147 (147)
Q Consensus       145 ~V~  147 (147)
                      .|+
T Consensus       446 ~V~  448 (450)
T 1z7z_I          446 NVL  448 (450)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            873

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.68  E-value=1.5e-16  Score=104.59  Aligned_cols=126  Identities=17%  Similarity=0.237  Sum_probs=75.8

Q ss_pred             eEEeeCCeEEEEEee-----cCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCC-CCc--eEE
Q psy7616          20 LTVRKGGTITLECKA-----SGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGV-GDP--VTV   90 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~-----~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~-~~~--~~~   90 (147)
                      ..+..|+.+.|.|..     .+.|.+.+.|++++..+..... ......|.|.++...|+|.|.|.+.+.. +..  .+.
T Consensus       130 ~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~  209 (349)
T 4dep_C          130 KLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTR  209 (349)
T ss_dssp             EEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEE
T ss_pred             eeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEE
Confidence            466789999999974     6678899999999987754322 3345679999999999999999999865 332  134


Q ss_pred             eEEEEEee------eecC-----------------------------------CCCcc-----c----------------
Q psy7616          91 DMTLEVLC------KILP-----------------------------------SGEKS-----L----------------  108 (147)
Q Consensus        91 ~~~l~v~~------~~~~-----------------------------------~~~~~-----~----------------  108 (147)
                      .+.+.+..      +|.+                                   .|..+     .                
T Consensus       210 ~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~  289 (349)
T 4dep_C          210 TLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRT  289 (349)
T ss_dssp             EEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTT
T ss_pred             EEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecC
Confidence            44555432      2211                                   12111     0                


Q ss_pred             c----CCceEEeecCCCCC-eEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 E----GFSITLEKVDRHQA-GVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~----~~~~~l~~~~~~d~-G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .    ...|.+.+++.+|+ |.|+|.|.|..|.. +..+.|.|
T Consensus       290 ~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~l~v  331 (349)
T 4dep_C          290 EDETRTQILSIKKVTSEDLKRSYVCHARSAKGEV-AKAAKVKQ  331 (349)
T ss_dssp             CCEEEEECC-------------CEEEEECSSCEE-EEECC---
T ss_pred             CCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcE-EEEEEEee
Confidence            0    01267788999999 99999999999987 66666654

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.68  E-value=9.1e-16  Score=98.51  Aligned_cols=128  Identities=25%  Similarity=0.286  Sum_probs=90.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      .+|.+...  .....+..|+.+.|.|.+.+    .+.|++++..+  ......+..|.|.+++..|+|.|.|.+.+  +.
T Consensus        11 ~~P~i~~~--~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n--g~   80 (290)
T 2o26_X           11 SPPSIHPA--QSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN--EMVENKKNEWIQEKAEATRTGTYTCSNSN--GL   80 (290)
T ss_dssp             -CCEESSC--SSEEEEETTSCEEEEEECTT----EEEEEEECSSS--CEEEECSSEEEETTCCGGGCEEEEEEESS--SC
T ss_pred             CCCEEeCC--CCeEEEcCCCcEEEEECCCC----cEEEecCCcce--eeecCCCceEEEeccCHHhCeEEEEEeeC--Cc
Confidence            35666543  33678999999999999877    89999998876  12223447899999999999999999988  32


Q ss_pred             ceEEeEEEEEeee-----------------------------ecCCC-Ccc------------ccCCceEEeecCCCCCe
Q psy7616          87 PVTVDMTLEVLCK-----------------------------ILPSG-EKS------------LEGFSITLEKVDRHQAG  124 (147)
Q Consensus        87 ~~~~~~~l~v~~~-----------------------------~~~~~-~~~------------~~~~~~~l~~~~~~d~G  124 (147)
                        ...+.+.+..+                             +.+.| ..+            .....+.+.+++.+|+|
T Consensus        81 --~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~d~G  158 (290)
T 2o26_X           81 --TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHR  158 (290)
T ss_dssp             --EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGGGTT
T ss_pred             --cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHHHCC
Confidence              44555555432                             22333 211            11235777899999999


Q ss_pred             -EEEEEeecCCCCCcCeeeEEEE
Q psy7616         125 -VYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       125 -~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                       .|+|.|.|..|...+..+.|.|
T Consensus       159 ~~Y~C~a~n~~~~~~s~~~~l~V  181 (290)
T 2o26_X          159 LCVRCAAQRDGTWLHSDKFTLKV  181 (290)
T ss_dssp             CEEEEEEEETTEEEECCCEEEEE
T ss_pred             CEEEEEEEECCceEEeEEEEEEE
Confidence             9999999986654455566655

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.68  E-value=2.1e-16  Score=109.07  Aligned_cols=137  Identities=18%  Similarity=0.263  Sum_probs=92.0

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEe-cCCCCCCCcee--eeccceEEEeecCCCCe-EEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK-KDSSLPSGEKS--LEGFSITLEKVDRHQAG-VYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~-~~~~~~~~~~~--~~~~~l~~~~~~~~~~g-~y~C~~~~   82 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.+.+.+.|++ ++..+......  .....|.|.++...|+| .|.|.+.+
T Consensus       113 ~p~~~~~~~~--~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n  190 (524)
T 2ec8_A          113 DPAKLFLVDR--SLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQ  190 (524)
T ss_dssp             CSSCSBCCCC--CCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCGGGTTCEEEEEEC-
T ss_pred             CCCccccccc--ceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccchhhCCceEEEEEEE
Confidence            4455443333  4578899999999999886668999988 66666543332  34567999999999999 99999987


Q ss_pred             CCCCceEEeEEEEEe----ee-----------------------------ec-CCCCcccc-------------------
Q psy7616          83 GVGDPVTVDMTLEVL----CK-----------------------------IL-PSGEKSLE-------------------  109 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~----~~-----------------------------~~-~~~~~~~~-------------------  109 (147)
                      ..+...+..+.+.+.    .+                             |. +.|..+..                   
T Consensus       191 ~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~  270 (524)
T 2ec8_A          191 EGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYE  270 (524)
T ss_dssp             ---CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECSSSCEE
T ss_pred             CCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCccccccccccccCCccc
Confidence            654332223334332    11                             11 33332211                   


Q ss_pred             -CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 -GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 -~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                       ...|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       271 ~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V  307 (524)
T 2ec8_A          271 RQATLTISSARVNDSGVFMCYANNTFGSA-NVTTTLEV  307 (524)
T ss_dssp             EEEEEEESSCCTTTCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             eEEEEEECCCCHHHCEEEEEEEEecCCce-EEEEEEEE
Confidence             2346678899999999999999999987 55777776

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.68  E-value=1.9e-15  Score=99.32  Aligned_cols=127  Identities=20%  Similarity=0.237  Sum_probs=88.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCC-----------CceEEEecCCCCC----------CCceeeeccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPV-----------PSIIWSKKDSSLP----------SGEKSLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~-----------~~v~w~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|+.+.|.|.+.+.|.           +.+.|++++....          ..........|.|.+++..|+|.|.
T Consensus        16 ~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~   95 (349)
T 4dep_C           16 QIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYT   95 (349)
T ss_dssp             CCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEEE
T ss_pred             eEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEEE
Confidence            668999999999999887554           8899999885321          1112234667999999999999999


Q ss_pred             EEeecCCCCceEEeEEEEEeeeec--------------------------------------CCCCcc-----------c
Q psy7616          78 CTATNGVGDPVTVDMTLEVLCKIL--------------------------------------PSGEKS-----------L  108 (147)
Q Consensus        78 C~~~~~~~~~~~~~~~l~v~~~~~--------------------------------------~~~~~~-----------~  108 (147)
                      |.+.+..+.. ...+.+.|..++.                                      +.|.++           .
T Consensus        96 C~a~n~~~~~-~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~~~~  174 (349)
T 4dep_C           96 CMLRNTTYCS-KVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIP  174 (349)
T ss_dssp             EEEECSSCEE-EEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSSEEE
T ss_pred             EEEecCCceE-EEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccceee
Confidence            9999876553 4455555543221                                      112111           1


Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCC-CCC--cCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGV-GDP--VTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~-g~~--~~~~~~l~V  146 (147)
                      .+..|.+.+++.+|+|.|+|.|.|.. |..  .+..+.|.|
T Consensus       175 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v  215 (349)
T 4dep_C          175 EGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKV  215 (349)
T ss_dssp             ETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             cCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEE
Confidence            12357789999999999999999987 432  245566554

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.68  E-value=4.2e-16  Score=103.66  Aligned_cols=129  Identities=22%  Similarity=0.423  Sum_probs=91.7

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEe-cCCCCCCC---ceeeeccceEEEeecCCC------CeEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK-KDSSLPSG---EKSLEGFSITLEKVDRHQ------AGVY   76 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~-~~~~~~~~---~~~~~~~~l~~~~~~~~~------~g~y   76 (147)
                      .+|.|...|.. .+.+..|+.+.|.|.+.+.|.+.+.|++ ++..+...   ........|.|.++...|      +|.|
T Consensus         2 ~~P~f~~~p~~-~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~~~~~d~G~Y   80 (388)
T 2v5m_A            2 KGPVFLKEPTN-RIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVY   80 (388)
T ss_dssp             EEEEEEECCCS-EEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTTEEEECCCCGGGCCHHHHEEEE
T ss_pred             CCCchhhCCCc-eEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCceEEecccChhhccccccCceE
Confidence            36788877764 4567789999999999888999999999 66665432   122355679999998887      9999


Q ss_pred             EEEeecCCCCceEEeEEEEEeeeec--------------------------------CCCCcc-----------------
Q psy7616          77 QCTATNGVGDPVTVDMTLEVLCKIL--------------------------------PSGEKS-----------------  107 (147)
Q Consensus        77 ~C~~~~~~~~~~~~~~~l~v~~~~~--------------------------------~~~~~~-----------------  107 (147)
                      .|.+.+..+...+..+.+.+..+|.                                +.|..+                 
T Consensus        81 ~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~  160 (388)
T 2v5m_A           81 ACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV  160 (388)
T ss_dssp             EEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEE
T ss_pred             EEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEE
Confidence            9999987665333444454433222                                222221                 


Q ss_pred             ccCCceEEeecCCCCC-eEEEEEeecCCCC
Q psy7616         108 LEGFSITLEKVDRHQA-GVYQCTATNGVGD  136 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~-G~Y~C~a~n~~g~  136 (147)
                      .....|.+.+++.+|+ |.|+|.|.|..+.
T Consensus       161 ~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~  190 (388)
T 2v5m_A          161 LPSGELHIREVGPEDGYKSYQCRTKHRLTG  190 (388)
T ss_dssp             CTTSCEEESSCCGGGGGCCEEEEEEETTTC
T ss_pred             ccCCcEEEecCCccccCeeEEEEeccCCCC
Confidence            1124577789999999 9999999998653

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.67  E-value=4.9e-16  Score=99.54  Aligned_cols=123  Identities=22%  Similarity=0.301  Sum_probs=82.2

Q ss_pred             CceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        18 ~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ..+.+..|+.+.|.|.+.+    .+.|++++..............|.|.+++..|+|.|.|.+.+..+.. +..+.+.+.
T Consensus        12 ~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~-~~~~~l~V~   86 (289)
T 3ejj_X           12 PELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAG-STTIHLYVK   86 (289)
T ss_dssp             SEEEECTTCCEEEEEECSS----CCEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC------CEEEEEEEC
T ss_pred             ceEEECCCCCEEEEEEeCC----cEEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCCcc-eeEEEEEEe
Confidence            3678899999999999876    49999876443211222345679999999999999999988766553 555556554


Q ss_pred             eeec-------------------------------CCCCc-c------------ccCCceEEeecCCCCCeEEEEEee-c
Q psy7616          98 CKIL-------------------------------PSGEK-S------------LEGFSITLEKVDRHQAGVYQCTAT-N  132 (147)
Q Consensus        98 ~~~~-------------------------------~~~~~-~------------~~~~~~~l~~~~~~d~G~Y~C~a~-n  132 (147)
                      .+|.                               +.|.. +            .....+.+.+++.+|+|.|+|.|. |
T Consensus        87 ~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~~~  166 (289)
T 3ejj_X           87 DPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVN  166 (289)
T ss_dssp             CSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEeecccccCEEEEEEEEeC
Confidence            3322                               22321 1            123457778899999999999999 4


Q ss_pred             CCCCCcCeeeEEEE
Q psy7616         133 GVGDPVTVDMTLEV  146 (147)
Q Consensus       133 ~~g~~~~~~~~l~V  146 (147)
                      ..+.. +..+.|.|
T Consensus       167 ~~~~~-~~~~~l~V  179 (289)
T 3ejj_X          167 GREST-STGIWLKV  179 (289)
T ss_dssp             TEEEE-CCCEEEEE
T ss_pred             CCccc-cccEEEEE
Confidence            44443 66666665

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.67  E-value=2.9e-15  Score=95.00  Aligned_cols=72  Identities=15%  Similarity=0.292  Sum_probs=54.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc------eeeeccceEEEeecCCCCeEEEEEe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE------KSLEGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      .+|.+...|.   ..+..|++++|.|.+.+ +.+.+.|++++..+....      .......|.|.+++..|+|.|.|.+
T Consensus         6 ~kP~i~~~P~---~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a   81 (257)
T 1b6u_A            6 RKPSLLAHPG---PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYG   81 (257)
T ss_dssp             CCCEECCBSC---SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEE
T ss_pred             CCCEEEEcCC---CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeE
Confidence            4666766654   37889999999999865 567899999987653211      0123457899999999999999998


Q ss_pred             ec
Q psy7616          81 TN   82 (147)
Q Consensus        81 ~~   82 (147)
                      .+
T Consensus        82 ~~   83 (257)
T 1b6u_A           82 SV   83 (257)
T ss_dssp             EC
T ss_pred             ec
Confidence            75

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.67  E-value=9.1e-17  Score=103.11  Aligned_cols=133  Identities=22%  Similarity=0.282  Sum_probs=88.1

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      .+|.+...+.  .+.+..|+.+.|.|.+.+.    +.|++++..............|.|.+++..|+|.|.|.+.+..+.
T Consensus         3 ~~P~i~~~~~--~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~   76 (292)
T 4dkd_C            3 SIPVIEPSVP--ELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG   76 (292)
T ss_dssp             -CCEEESCCS--SCEECTTCCEEEEEECSSC----CCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC----
T ss_pred             CCceecCCCC--eEEEcCCCcEEEEEcCCCc----eEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCCCC
Confidence            4677766665  5589999999999998773    899976543211111113458999999999999999999886554


Q ss_pred             ceEEeEEEEEeeee-------------------------------cCCCCcc-------------ccCCceEEeecCCCC
Q psy7616          87 PVTVDMTLEVLCKI-------------------------------LPSGEKS-------------LEGFSITLEKVDRHQ  122 (147)
Q Consensus        87 ~~~~~~~l~v~~~~-------------------------------~~~~~~~-------------~~~~~~~l~~~~~~d  122 (147)
                      . +..+.|.+..+|                               .+.|...             .....+.+.+++.+|
T Consensus        77 ~-~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d  155 (292)
T 4dkd_C           77 G-SAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQ  155 (292)
T ss_dssp             C-CEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEETTCCGGG
T ss_pred             c-ceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccCCceEEECCCCHHH
Confidence            3 444445444322                               1223221             112347778999999


Q ss_pred             CeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         123 AGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       123 ~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +|.|+|.|.|..|...+..+.|.|
T Consensus       156 ~G~Y~C~a~n~~~~~~s~~~~l~V  179 (292)
T 4dkd_C          156 SQDYQCSALMGGRKVMSISIRLKV  179 (292)
T ss_dssp             CSEEEEEECSTTSCEECCCEEEEE
T ss_pred             CeEEEEEEEeCCCceeEEEEEEEE
Confidence            999999999988766555677765

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.67  E-value=1.5e-15  Score=109.51  Aligned_cols=137  Identities=24%  Similarity=0.440  Sum_probs=97.0

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee----------eccceEEEeecCCCCeEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL----------EGFSITLEKVDRHQAGVY   76 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~----------~~~~l~~~~~~~~~~g~y   76 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+.......          ....|.|.++...|+|.|
T Consensus       428 ~~p~i~~~~~--~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  505 (816)
T 3dmk_A          428 DPPVIRQAFQ--EETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLY  505 (816)
T ss_dssp             CCCEEEEECC--CEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEE
T ss_pred             CCCceEecCc--ceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEE
Confidence            3566655554  4478899999999999998999999999988775432211          123588999999999999


Q ss_pred             EEEeecCCCCceEEeEEEEEeeeecC----------------------------CCCcc------------ccCCceEEe
Q psy7616          77 QCTATNGVGDPVTVDMTLEVLCKILP----------------------------SGEKS------------LEGFSITLE  116 (147)
Q Consensus        77 ~C~~~~~~~~~~~~~~~l~v~~~~~~----------------------------~~~~~------------~~~~~~~l~  116 (147)
                      .|.+.|..+.. .....+.+..+|.+                            .|.++            ...+.+.+.
T Consensus       506 ~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~  584 (816)
T 3dmk_A          506 KCIAKSKVGVA-EHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIE  584 (816)
T ss_dssp             EEEEEETTEEE-EEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEES
T ss_pred             EEEEEECCCeE-EEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEE
Confidence            99999987653 55566666543322                            22221            123456667


Q ss_pred             ecC-CCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         117 KVD-RHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       117 ~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ++. .+|+|.|+|.|.|..|...+..+.+.|
T Consensus       585 ~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v  615 (816)
T 3dmk_A          585 NVERNSDQATYTCVAKNQEGYSARGSLEVQV  615 (816)
T ss_dssp             SCCHHHHCEEEEEEEEESSSCEEEEEEEEEE
T ss_pred             ecCccccCEEEEEEEEECCCceeeeeEEEEE
Confidence            787 589999999999999866455555554

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.66  E-value=6e-16  Score=101.19  Aligned_cols=127  Identities=14%  Similarity=0.170  Sum_probs=87.0

Q ss_pred             ceEEeeCCeEEEEEeecCC---------CCCceEEEecCCCCCCCceeeeccceEEEeecCCCCe-EEEEEeecCCCCce
Q psy7616          19 QLTVRKGGTITLECKASGN---------PVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAG-VYQCTATNGVGDPV   88 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~---------~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g-~y~C~~~~~~~~~~   88 (147)
                      .+.+..|+.+.|.|.+.+.         +.+.+.|++++..+...........|.|.+++..|+| .|.|.+.+..|...
T Consensus        38 ~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~  117 (329)
T 3oq3_B           38 NDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCV  117 (329)
T ss_dssp             EEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSCEE
T ss_pred             eEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCcee
Confidence            4578899999999997764         4578999999877643222345778999999999999 89999999775432


Q ss_pred             EEeEEEEEeee------------------------------ecCCCCcc------------ccCCceEEeecCCCCCeEE
Q psy7616          89 TVDMTLEVLCK------------------------------ILPSGEKS------------LEGFSITLEKVDRHQAGVY  126 (147)
Q Consensus        89 ~~~~~l~v~~~------------------------------~~~~~~~~------------~~~~~~~l~~~~~~d~G~Y  126 (147)
                      .......+..+                              |.+.|.++            ..+..|.+.+++.+|+|.|
T Consensus       118 ~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y  197 (329)
T 3oq3_B          118 QGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRY  197 (329)
T ss_dssp             EEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETTEEEECSCCGGGCEEE
T ss_pred             eEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCCEEEEeecChhhCEEE
Confidence            22211111111                              22233322            1134677789999999999


Q ss_pred             EEEeecC--CCCCcCee----eEEEE
Q psy7616         127 QCTATNG--VGDPVTVD----MTLEV  146 (147)
Q Consensus       127 ~C~a~n~--~g~~~~~~----~~l~V  146 (147)
                      +|.|.|.  .|.. ...    +.|.|
T Consensus       198 ~C~a~n~~~~g~~-~~~~s~~~~l~V  222 (329)
T 3oq3_B          198 DCYVHYDDVRIKN-DIVVSRCKILTV  222 (329)
T ss_dssp             EEEEEECCTTSSS-CEEEEEEEEEEE
T ss_pred             EEEEEecccCCCc-eeEEEeeEEEEE
Confidence            9999998  7655 333    55554

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.66  E-value=1.7e-15  Score=93.25  Aligned_cols=125  Identities=22%  Similarity=0.363  Sum_probs=80.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CC--------------CCCceee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SL--------------PSGEKSL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~--------------~~~~~~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.+.|.|.+.+.+.+.+.|+++..  .+              .......   ....|.|.+++..|+|.|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3d9a_L           10 TLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (213)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhCEEEEEe
Confidence            5678899999999999888888899998542  11              0111111   123799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEee-------------------------------ee---cCCCCcc----ccC-----------
Q psy7616          80 ATNGVGDPVTVDMTLEVLC-------------------------------KI---LPSGEKS----LEG-----------  110 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~-------------------------------~~---~~~~~~~----~~~-----------  110 (147)
                      +.+..+......+.+.+..                               .|   .+.|..+    ..+           
T Consensus        90 ~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~  169 (213)
T 3d9a_L           90 QSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSK  169 (213)
T ss_dssp             ECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTT
T ss_pred             eecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCC
Confidence            9876433111111222211                               11   2344433    111           


Q ss_pred             -------CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         111 -------FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       111 -------~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                             ..|.+.+++.+|+|.|+|.|.|..... .....+
T Consensus       170 ~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~i  209 (213)
T 3d9a_L          170 DSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS-PIVKSF  209 (213)
T ss_dssp             TCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSS-CEEEEE
T ss_pred             CCCEEEEEEEEEeccccCCCCEEEEEEEEccCCC-ceEEEe
Confidence                   157778999999999999999987654 444444

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.65  E-value=5.8e-15  Score=95.96  Aligned_cols=74  Identities=18%  Similarity=0.283  Sum_probs=54.7

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce------eeeccceEEEeecCCCCeEEEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +|.+...+.  . .+..|+.++|.|.+.+ +.+.+.|++++..+.....      ......|.|.+++..|+|.|.|.+.
T Consensus       119 ~p~~~~~~~--~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~  194 (316)
T 3vh8_G          119 KPSLLAHPG--P-LVKSGERVILQCWSDI-MFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGS  194 (316)
T ss_dssp             CCEEEEESC--S-EEETTCCEEEEEEESS-CCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEEecCC--C-ccCCCCeEEEEEcCCC-CCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEe
Confidence            345554443  2 4789999999999854 6678999999877643211      1244578999999999999999999


Q ss_pred             cCCC
Q psy7616          82 NGVG   85 (147)
Q Consensus        82 ~~~~   85 (147)
                      |..+
T Consensus       195 n~~g  198 (316)
T 3vh8_G          195 VTHT  198 (316)
T ss_dssp             CTTC
T ss_pred             cCCC
Confidence            8755

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.65  E-value=4.6e-16  Score=85.15  Aligned_cols=88  Identities=23%  Similarity=0.555  Sum_probs=68.7

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce----ee---eccceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~----~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .||.|...+.  .+.+..|+.+.|.|.+.|.|.|.+.|++++..+.....    ..   ....|.|.+++..|+|.|.|.
T Consensus         4 ~PP~i~~~p~--~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   81 (100)
T 3knb_A            4 IPPKIEALPS--DISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLS   81 (100)
T ss_dssp             EEEEECCCCS--EEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEeCCC--cEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEE
Confidence            3677765554  67899999999999999999999999999988754321    11   234699999999999999999


Q ss_pred             eecCCCCceEEeEEEEEe
Q psy7616          80 ATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~   97 (147)
                      +.|..|.. +..+.|.|.
T Consensus        82 a~N~~G~~-~~~~~l~V~   98 (100)
T 3knb_A           82 LGNEFGSD-SATVNIHIR   98 (100)
T ss_dssp             EEETTEEE-EEEEEEEEE
T ss_pred             EEECCCEE-EEEEEEEEE
Confidence            99988764 666666654

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.65  E-value=1.5e-15  Score=93.92  Aligned_cols=126  Identities=19%  Similarity=0.218  Sum_probs=81.9

Q ss_pred             eEEeeCCeEEEEEeecCCCC-----CceEEEecCCCCC---------------CCceee------eccceEEEeecCCCC
Q psy7616          20 LTVRKGGTITLECKASGNPV-----PSIIWSKKDSSLP---------------SGEKSL------EGFSITLEKVDRHQA   73 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~-----~~v~w~~~~~~~~---------------~~~~~~------~~~~l~~~~~~~~~~   73 (147)
                      +.+..|+++.|.|...+.+.     +.+.|++++....               ......      ....|.|.+++..|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            46778999999999876543     5799999875431               001111      145799999999999


Q ss_pred             eEEEEEeecCCCCce---------------------------EEeEEEEE---eeeecCCCCcc---------------c
Q psy7616          74 GVYQCTATNGVGDPV---------------------------TVDMTLEV---LCKILPSGEKS---------------L  108 (147)
Q Consensus        74 g~y~C~~~~~~~~~~---------------------------~~~~~l~v---~~~~~~~~~~~---------------~  108 (147)
                      |.|.|.+.+......                           ...+...+   ...|.+.|...               .
T Consensus        85 G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~  164 (222)
T 4i0k_A           85 GSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMAN  164 (222)
T ss_dssp             SCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEEC
T ss_pred             EEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcC
Confidence            999999985321100                           00011111   11234455442               0


Q ss_pred             cCC---ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGF---SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~---~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+   .+.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       165 ~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  204 (222)
T 4i0k_A          165 ERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQ-DAHGSVTI  204 (222)
T ss_dssp             TTSCEEEEEEEEEECCTTCEEEEEEEETTTTE-EEEEEEEC
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEEEECCCCCC-ceEEEEEE
Confidence            111   15678899999999999999999987 77777776

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.65  E-value=9.7e-16  Score=101.35  Aligned_cols=120  Identities=17%  Similarity=0.227  Sum_probs=87.3

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEee--
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC--   98 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~--   98 (147)
                      .+..|+.+.|.|.+.+.|.+.+.|++++...     ......|.|.++...|+|.|.|.+.+..+. ....+.+.+..  
T Consensus       107 ~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~~~~~~-~~~~~~l~v~~~p  180 (363)
T 1wio_A          107 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-----IQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAFQ  180 (363)
T ss_dssp             SEESBSCEEEEEECCTTCCCCEEEECSSSCE-----EEESSEEEECSBCGGGCEECEEEEEETTEE-EEECCEECEECCS
T ss_pred             EEecCCCEEEEEEcCCCCCCeEEEEcCCCcc-----cccceEEEEeeCChhcCCEEEEEEecCCCe-EEEEEEEEEecCC
Confidence            5689999999999988888999999987543     335668999999999999999999875322 12222222221  


Q ss_pred             -----------------------------eecCCCCcc-----c--------------------------c--CCceEEe
Q psy7616          99 -----------------------------KILPSGEKS-----L--------------------------E--GFSITLE  116 (147)
Q Consensus        99 -----------------------------~~~~~~~~~-----~--------------------------~--~~~~~l~  116 (147)
                                                   .|.+.|.++     .                          .  ...|.+.
T Consensus       181 ~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~  260 (363)
T 1wio_A          181 KASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLP  260 (363)
T ss_dssp             CSEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEES
T ss_pred             CCCCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEc
Confidence                                         233344322     0                          1  1267778


Q ss_pred             ecCCCCCeEEEEEeecC--CCCCcCeeeEEEEC
Q psy7616         117 KVDRHQAGVYQCTATNG--VGDPVTVDMTLEVL  147 (147)
Q Consensus       117 ~~~~~d~G~Y~C~a~n~--~g~~~~~~~~l~V~  147 (147)
                      +++.+|+|.|+|.|.|.  .|.. +..+.|.|+
T Consensus       261 ~v~~~d~G~Y~C~a~n~~~~g~~-~~~~~l~V~  292 (363)
T 1wio_A          261 QALPQYAGSGNLTLALEAKTGKL-HQEVNLVVM  292 (363)
T ss_dssp             SBCGGGCEEEEEEECBTTTTCCE-EEEEEEEEE
T ss_pred             cCCcCcCcEEEEEEEEhhhcCeE-EEEEeEEEE
Confidence            99999999999999999  8976 778888773

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.65  E-value=4.4e-15  Score=83.01  Aligned_cols=95  Identities=23%  Similarity=0.368  Sum_probs=74.9

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-e----eccceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-L----EGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-~----~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .||.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+...... .    ....|.|.++...|+|.|.|.+.
T Consensus         6 ~pp~i~~~~~--~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (114)
T 2cqv_A            6 SGPQIIQFPE--DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVE   83 (114)
T ss_dssp             CCCEESCCCC--SEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEE
T ss_pred             CCCEEEeCCC--CeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEE
Confidence            4667765554  668999999999999999999999999999887543221 1    14579999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeeecCCC
Q psy7616          82 NGVGDPVTVDMTLEVLCKILPSG  104 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~  104 (147)
                      |..+.. ...+.|.|...|..+.
T Consensus        84 N~~g~~-~~~~~l~V~~~p~~P~  105 (114)
T 2cqv_A           84 NKLGSR-QAQVNLTVVDKPDPPA  105 (114)
T ss_dssp             CSSCEE-ECCEEEEEECSCSCCC
T ss_pred             ECCCcE-EEEEEEEEECCCCCCC
Confidence            988764 6677888877665543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.64  E-value=9e-15  Score=102.03  Aligned_cols=127  Identities=20%  Similarity=0.362  Sum_probs=89.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCC---ceEEEecCCCCC---------------CCce-ee-----eccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNPVP---SIIWSKKDSSLP---------------SGEK-SL-----EGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~---~v~w~~~~~~~~---------------~~~~-~~-----~~~~l~~~~~~~~~~g   74 (147)
                      .+.+..|+.+.|.|.+.+.+.+   .+.|++++..+.               ..+. ..     ....|.|.+++..|+|
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G   88 (585)
T 2ocw_A            9 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSG   88 (585)
T ss_pred             eeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCcccCE
Confidence            5688999999999998876543   799999875431               0011 11     1235889999999999


Q ss_pred             EEEEEeecCCCCceEEeEEEEEeeeecC------------------------------CCCcccc---------------
Q psy7616          75 VYQCTATNGVGDPVTVDMTLEVLCKILP------------------------------SGEKSLE---------------  109 (147)
Q Consensus        75 ~y~C~~~~~~~~~~~~~~~l~v~~~~~~------------------------------~~~~~~~---------------  109 (147)
                      .|.|.+.+..+.. +..+.|.+..+|.+                              .|.++..               
T Consensus        89 ~Y~C~~~n~~~~~-~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~  167 (585)
T 2ocw_A           89 RYKCGLGINSRGL-SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNP  167 (585)
T ss_pred             EEEEEcccCCCCc-eEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCc
Confidence            9999998866553 55556665543322                              2322100               


Q ss_pred             -----------CC-----ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 -----------GF-----SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 -----------~~-----~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                                 +.     .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus       168 ~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~  220 (585)
T 2ocw_A          168 NYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN-KKNADLQVL  220 (585)
T ss_pred             cccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccc-cceEEEEEc
Confidence                       11     47778999999999999999999987 777888774

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.64  E-value=4.4e-16  Score=95.07  Aligned_cols=125  Identities=16%  Similarity=0.173  Sum_probs=80.5

Q ss_pred             ceEEeeCCeEEEEEeecC----CCCCceEEEecCCCCCC-------------Cce---eeeccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASG----NPVPSIIWSKKDSSLPS-------------GEK---SLEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~----~~~~~v~w~~~~~~~~~-------------~~~---~~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+.+..|+.+.|.|.+.+    .+.+.+.|.+++..+..             ...   ......|.|.+++..|+|.|.|
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCcEEEEecccchhCeEEEE
Confidence            457889999999999853    24568999998765410             000   1134579999999999999999


Q ss_pred             EeecCCCCce----EEeEEEEEeee-----------------------------ecCCCCcc-------------c-cCC
Q psy7616          79 TATNGVGDPV----TVDMTLEVLCK-----------------------------ILPSGEKS-------------L-EGF  111 (147)
Q Consensus        79 ~~~~~~~~~~----~~~~~l~v~~~-----------------------------~~~~~~~~-------------~-~~~  111 (147)
                      .+.+..+...    ...+.|.+..+                             |.+.|..+             . .+.
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~  162 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETE  162 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTC
T ss_pred             EEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCc
Confidence            9998654432    23444444332                             12223221             0 011


Q ss_pred             ceE---EeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         112 SIT---LEKVDRHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       112 ~~~---l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      ...   ...++.+|.|.|+|.|.|..|.. +..+++
T Consensus       163 ~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~-s~~~~~  197 (201)
T 1dr9_A          163 LYAVSSKLDFNMTTNHSFMCLIKYGHLRV-NQTFNW  197 (201)
T ss_dssp             CEEEEEEEEEETTSCEEEEEEEEETTCCE-EEEEEE
T ss_pred             EEEEEEEEEEEecCCCEEEEEEecCccee-eeEEec
Confidence            111   13456789999999999999977 666654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.64  E-value=3.8e-17  Score=106.80  Aligned_cols=125  Identities=22%  Similarity=0.395  Sum_probs=32.2

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ...+..|+.+.|.|.+.+. |.+.+.|++++..+..... ......|.|.+++..|+|.|.|.+.+. +.. ...+.+.|
T Consensus        17 ~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~-~~~-~~~~~l~V   94 (334)
T 1ry7_B           17 QLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLT-QRV-LCHFSVRV   94 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeC-CeE-EEEEEEEE
Confidence            5588899999999998876 5678999999887754322 234567999999999999999999876 321 23333332


Q ss_pred             ee-------------------------------------------------------eecCCCCcc--------------
Q psy7616          97 LC-------------------------------------------------------KILPSGEKS--------------  107 (147)
Q Consensus        97 ~~-------------------------------------------------------~~~~~~~~~--------------  107 (147)
                      ..                                                       .|.+.|..+              
T Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~  174 (334)
T 1ry7_B           95 TDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK  174 (334)
T ss_dssp             ------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCC
T ss_pred             eccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEECccccccccee
Confidence            21                                                       122233322              


Q ss_pred             --ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 --LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 --~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                        .....|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       175 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  214 (334)
T 1ry7_B          175 LRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYTLDV  214 (334)
T ss_dssp             CCTTTTEEEECSCCGGGCCCEEEEEEETTEEE-EEEEEEEE
T ss_pred             cccceEEEEECCCCcccCEEEEEEEEeCCCCE-EEEEEEEE
Confidence              012257778999999999999999999876 66777766

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.63  E-value=1.8e-15  Score=95.16  Aligned_cols=78  Identities=18%  Similarity=0.223  Sum_probs=53.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCc-----eEEEecCCCCCCC-----------------ce------eeeccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPS-----IIWSKKDSSLPSG-----------------EK------SLEGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~-----v~w~~~~~~~~~~-----------------~~------~~~~~~l~~~~~~~   70 (147)
                      ...+..|+.+.|.|.+.+.+.+.     +.|++++......                 ..      ......|.|.+++.
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v~~   91 (248)
T 3pv7_A           12 TQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQL   91 (248)
T ss_dssp             EEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSCCG
T ss_pred             CeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCCCH
Confidence            55788999999999997766654     9999975432210                 00      01233599999999


Q ss_pred             CCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          71 HQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        71 ~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      .|+|.|.|.+.+..+.. ...+.|.|.
T Consensus        92 ~D~G~Y~C~~~~~~~~~-~~~~~L~V~  117 (248)
T 3pv7_A           92 EEAGEYRCEVVVTPLKA-QGTVQLEVV  117 (248)
T ss_dssp             GGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             HHCeEEEEEEEeCCccc-eeEEEEEEe
Confidence            99999999998765432 334444443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.63  E-value=1.1e-15  Score=95.03  Aligned_cols=81  Identities=19%  Similarity=0.284  Sum_probs=57.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCC-CceEEEecCCCCC--------------CC-ce----------eeeccceEEEeecCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPV-PSIIWSKKDSSLP--------------SG-EK----------SLEGFSITLEKVDRHQ   72 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~-~~v~w~~~~~~~~--------------~~-~~----------~~~~~~l~~~~~~~~~   72 (147)
                      .+.+..|+.+.|.|.+.+.+. +.+.|++++....              .. ..          ......|.|.+++..|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~L~i~~v~~~D   88 (231)
T 2pet_A            9 LVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEAQVGD   88 (231)
T ss_dssp             EEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTCCEEESSCCGGG
T ss_pred             cEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCceEEEcccCccc
Confidence            568899999999999988774 7899998765422              00 01          2223459999999999


Q ss_pred             CeEEEEEeecCCCCceEEeEEEEEeee
Q psy7616          73 AGVYQCTATNGVGDPVTVDMTLEVLCK   99 (147)
Q Consensus        73 ~g~y~C~~~~~~~~~~~~~~~l~v~~~   99 (147)
                      +|.|.|.+.+.........+.+.|..+
T Consensus        89 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~  115 (231)
T 2pet_A           89 ERDYVCVVRAGAAGTAEATARLNVFAK  115 (231)
T ss_dssp             CEEEEEEEECGGGCEEEEEEEEEEEBC
T ss_pred             CceEEEEEEecCCCceEEEEEEEEEec
Confidence            999999998865222345555555543

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.63  E-value=1.5e-15  Score=92.45  Aligned_cols=124  Identities=19%  Similarity=0.255  Sum_probs=79.8

Q ss_pred             ceEEeeCCeEEEEEeecC-CCCCceEEEecCCCCC----C----------------CceeeeccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDSSLP----S----------------GEKSLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~----~----------------~~~~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|+++.|.|...+ .+.+.+.|++++..+.    .                ......+..|.|.+++..|+|.|.
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~   86 (193)
T 2if7_A            7 MVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSYSLQLSNLKMEDTGSYR   86 (193)
T ss_dssp             EEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTCCEEECSCCGGGCEEEE
T ss_pred             EEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCeEEEECCCCcccCceEE
Confidence            567889999999999865 3456899999864321    0                001123567999999999999999


Q ss_pred             EEeecCCCCceEEeEEEEEeee---ecC-----------------------------CCCcc----ccCCceEEeecCCC
Q psy7616          78 CTATNGVGDPVTVDMTLEVLCK---ILP-----------------------------SGEKS----LEGFSITLEKVDRH  121 (147)
Q Consensus        78 C~~~~~~~~~~~~~~~l~v~~~---~~~-----------------------------~~~~~----~~~~~~~l~~~~~~  121 (147)
                      |.+.+..+.. ...+.|.|..+   |.+                             .|.++    ..+..+.+.....+
T Consensus        87 C~~~~~~~~~-~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~~~~l~i~~~~~~  165 (193)
T 2if7_A           87 AQISTKTSAK-LSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSSQPNLTVSWDPRI  165 (193)
T ss_dssp             EEEECSSCEE-EEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEESSSEEEEEECTTT
T ss_pred             EEEEecCCCe-EEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCCCCeEEEEeccCc
Confidence            9998876543 33445555322   111                             11111    11223444444443


Q ss_pred             -CCeEEEEEeecCCCCCcCeeeEE
Q psy7616         122 -QAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       122 -d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                       |+|.|+|.|.|..|.. +..+.+
T Consensus       166 ~d~G~Y~C~a~N~~g~~-s~~~~~  188 (193)
T 2if7_A          166 SSEQDYTCIAENAVSNL-SFSVSA  188 (193)
T ss_dssp             CSCCEEEEEEEETTEEE-EEEEEH
T ss_pred             CCCCcEEEEEECCCCcc-cccccc
Confidence             8999999999999977 655543

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.62  E-value=1.5e-14  Score=94.43  Aligned_cols=68  Identities=22%  Similarity=0.399  Sum_probs=52.9

Q ss_pred             CceEEeeCCeEEEEEeecCC-CCCceEEEecCCCCCCC----------cee---------eeccceEEEeecCCCCeEEE
Q psy7616          18 GQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSG----------EKS---------LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        18 ~~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~~~----------~~~---------~~~~~l~~~~~~~~~~g~y~   77 (147)
                      ..+.+..|+.+.|.|.+.+. |.+.+.|++++......          ...         .....|.|.+++..|+|.|.
T Consensus        11 ~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~   90 (327)
T 2wng_A           11 KSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGTYY   90 (327)
T ss_dssp             SEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEEEE
T ss_pred             CceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeEEE
Confidence            36789999999999999887 77899999987653210          111         23457999999999999999


Q ss_pred             EEeecCCC
Q psy7616          78 CTATNGVG   85 (147)
Q Consensus        78 C~~~~~~~   85 (147)
                      |.+.+..+
T Consensus        91 C~a~n~~~   98 (327)
T 2wng_A           91 CVKFRKGS   98 (327)
T ss_dssp             EEEEESST
T ss_pred             EEeecCCC
Confidence            99988644

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.62  E-value=5.3e-16  Score=95.46  Aligned_cols=67  Identities=16%  Similarity=0.271  Sum_probs=50.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC-------------CCce----eeeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP-------------SGEK----SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~-------------~~~~----~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.++|.|.+.+.+.+.+.|++..  ....             ....    ......|.|.+++..|+|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            557889999999999988888999999832  1110             0011    11234699999999999999999


Q ss_pred             eecCCC
Q psy7616          80 ATNGVG   85 (147)
Q Consensus        80 ~~~~~~   85 (147)
                      +.+..+
T Consensus        89 ~~~~~~   94 (213)
T 3mj8_L           89 SWDGTN   94 (213)
T ss_dssp             EEETTT
T ss_pred             eccCCc
Confidence            988765

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.62  E-value=5.4e-15  Score=94.81  Aligned_cols=124  Identities=18%  Similarity=0.191  Sum_probs=77.6

Q ss_pred             CceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee----eccceEEEeecCCCCeEEEEEeecCCCCce--EEe
Q psy7616          18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL----EGFSITLEKVDRHQAGVYQCTATNGVGDPV--TVD   91 (147)
Q Consensus        18 ~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~--~~~   91 (147)
                      ..+.+..|+.+.|.|.+.+.    +.|++++..+.......    ....|.|.++...|+|.|.|.+.+..+...  ...
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~~   83 (289)
T 3mjg_X            8 PELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETDERKR   83 (289)
T ss_dssp             SEEECCTTCCEEEEEEESSC----CEEEBTTBCCSEEEEECTTSCEEEEEEECSCCGGGCEEEEEECCC------CCCEE
T ss_pred             CeEEEeCCCcEEEEEeccce----EEEECCCCCcccceeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcCcEEe
Confidence            35678899999999998773    99999998764222111    235789999999999999999998765421  233


Q ss_pred             EEEEEeeeecCCCCc---------cccCCceEE------------------------------eecCCCCCeEEEEEeec
Q psy7616          92 MTLEVLCKILPSGEK---------SLEGFSITL------------------------------EKVDRHQAGVYQCTATN  132 (147)
Q Consensus        92 ~~l~v~~~~~~~~~~---------~~~~~~~~l------------------------------~~~~~~d~G~Y~C~a~n  132 (147)
                      +.+.+..+ ..+...         ..+|..+.|                              ..+...|+|.|+|.|.|
T Consensus        84 ~~v~v~~p-~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~C~a~n  162 (289)
T 3mjg_X           84 LYIFVPDP-TVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTI  162 (289)
T ss_dssp             EEEECCCT-TCCBCCCCHHHHEEEESSCCCEEECCCBSCTTSCEEEEESSCCSCCCCCEETTTEEEECCCSSEEEEEEEE
T ss_pred             EEEEEECC-CcCcccCCCCcceEEeecCCeEEEEeEcCCCCceEEEEeCCCCCccceeecCCcCeeeeccCcEEEEEEEe
Confidence            33433321 111110         123333333                              12346799999999998


Q ss_pred             CCCCCcCeeeEEEE
Q psy7616         133 GVGDPVTVDMTLEV  146 (147)
Q Consensus       133 ~~g~~~~~~~~l~V  146 (147)
                      ..+...+..+.|.|
T Consensus       163 ~~~~~~s~~~~l~v  176 (289)
T 3mjg_X          163 GDREVDSDAYYVYR  176 (289)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CCceeeeeeEEEEe
Confidence            87655455566655

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.62  E-value=7.3e-16  Score=100.95  Aligned_cols=124  Identities=17%  Similarity=0.200  Sum_probs=87.7

Q ss_pred             EEeeCCeEEEEEe-----ecCCCCCceEEEecCCCCCCCc--eee--eccceEEEeecCCCCeEEEEEeecCCCCc---e
Q psy7616          21 TVRKGGTITLECK-----ASGNPVPSIIWSKKDSSLPSGE--KSL--EGFSITLEKVDRHQAGVYQCTATNGVGDP---V   88 (147)
Q Consensus        21 ~~~~g~~~~l~C~-----~~~~~~~~v~w~~~~~~~~~~~--~~~--~~~~l~~~~~~~~~~g~y~C~~~~~~~~~---~   88 (147)
                      .+..|+.+.|.|.     ..+.|.+.+.|++++..+....  ...  ....|.|.++...|+|.|.|.+.+..+..   .
T Consensus       131 ~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  210 (339)
T 3o4o_C          131 ILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNI  210 (339)
T ss_dssp             EEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEE
T ss_pred             EEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEE
Confidence            6788999999999     6777889999999988775431  111  22479999999999999999999876531   2


Q ss_pred             EEeEEEEEeee-----ecC---------------------------------CCCccc----------------------
Q psy7616          89 TVDMTLEVLCK-----ILP---------------------------------SGEKSL----------------------  108 (147)
Q Consensus        89 ~~~~~l~v~~~-----~~~---------------------------------~~~~~~----------------------  108 (147)
                      ...+.+.+...     |.+                                 .|..+.                      
T Consensus       211 ~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~  290 (339)
T 3o4o_C          211 TRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSE  290 (339)
T ss_dssp             EEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCC
T ss_pred             EEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecc
Confidence            44555555421     111                                 111110                      


Q ss_pred             cCC-----ceEEeecCCCCC-eEEEEEeecCCCCCcCeeeEEE
Q psy7616         109 EGF-----SITLEKVDRHQA-GVYQCTATNGVGDPVTVDMTLE  145 (147)
Q Consensus       109 ~~~-----~~~l~~~~~~d~-G~Y~C~a~n~~g~~~~~~~~l~  145 (147)
                      .|.     .|.+.+++.+|+ |.|+|.|.|..|.. +..+.+.
T Consensus       291 ~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~-~~~~~~~  332 (339)
T 3o4o_C          291 NNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQ-TLRTTVK  332 (339)
T ss_dssp             SSSCEEEECCEECSSCCCSCCCCCEEEEEETTEEE-CCBCCCC
T ss_pred             cCceEEEEEEEEEEechhhcCccEEEEEEeccCce-EEEEEhh
Confidence            111     577889999998 99999999999988 6665543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.61  E-value=1.4e-14  Score=89.05  Aligned_cols=67  Identities=24%  Similarity=0.483  Sum_probs=49.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC--------------CCCceee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL--------------PSGEKSL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~--------------~~~~~~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++..  ..+              .......   ....|.|.+++..|+|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (210)
T 1lk3_L            9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (210)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEEEE
Confidence            568899999999999988888889999843  221              0111111   123799999999999999999


Q ss_pred             eecCCC
Q psy7616          80 ATNGVG   85 (147)
Q Consensus        80 ~~~~~~   85 (147)
                      +.+..+
T Consensus        89 ~~~~~~   94 (210)
T 1lk3_L           89 QSWNGP   94 (210)
T ss_dssp             ECSSSS
T ss_pred             EEcCCC
Confidence            987543

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.3e-14  Score=79.21  Aligned_cols=90  Identities=30%  Similarity=0.567  Sum_probs=71.3

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC---ceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG---EKSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+...   ........|.|.++...|+|.|.|.+.|.
T Consensus         7 ~~P~i~~~p~--~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~   84 (100)
T 2edj_A            7 GPPIILQGPA--NQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSS   84 (100)
T ss_dssp             SSCEEEECCC--CEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTCCEEEESCCTTTCCEEEEEEECS
T ss_pred             CCCEEEeCcC--CEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCCEEEEccCCcccCEEEEEEEEcC
Confidence            4677777665  568899999999999999899999999998776421   12234567999999999999999999998


Q ss_pred             CCCceEEeEEEEEeee
Q psy7616          84 VGDPVTVDMTLEVLCK   99 (147)
Q Consensus        84 ~~~~~~~~~~l~v~~~   99 (147)
                      .+.. ...+.|.|..+
T Consensus        85 ~g~~-~~~~~l~V~~~   99 (100)
T 2edj_A           85 SGET-SWSAVLDVTES   99 (100)
T ss_dssp             SCCC-BCCEEEEEESC
T ss_pred             CCCE-EEEEEEEEecC
Confidence            8775 66677766543

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.61  E-value=4.3e-15  Score=82.18  Aligned_cols=96  Identities=27%  Similarity=0.479  Sum_probs=63.9

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce---eeeccceEEEeecCCCCeEEEEEe
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      .+..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+.....   ......|.|.++...|+|.|.|.+
T Consensus         6 ~~~~~P~~~~~~~--~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   83 (108)
T 3kvq_A            6 LERVAPTITGNLE--NQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQA   83 (108)
T ss_dssp             -----CCCBSCCC--CEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTTEEEECSCCGGGCEEEEEEE
T ss_pred             CccCCCceecCCC--CeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCcEEEEeecCcccCEEEEEEE
Confidence            4456788876665  56889999999999999889999999999987754322   123457999999999999999999


Q ss_pred             ecCCCCceEEeEEEEEeeeecC
Q psy7616          81 TNGVGDPVTVDMTLEVLCKILP  102 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~  102 (147)
                      .|..+.. ...+.+.|..+|..
T Consensus        84 ~n~~g~~-~~~~~l~V~~~~~~  104 (108)
T 3kvq_A           84 CSVLGCA-KVEAFFIIEGAQEK  104 (108)
T ss_dssp             C----CE-EEEEEEEEEC----
T ss_pred             EeCCCce-EEEEEEEEeCCCcc
Confidence            9988774 67777877766543

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.60  E-value=1.6e-14  Score=88.86  Aligned_cols=66  Identities=20%  Similarity=0.400  Sum_probs=48.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCC-C--------------CCce-ee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-P--------------SGEK-SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~-~--------------~~~~-~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++..... .              .... ..   ....|.|.+++..|+|.|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (213)
T 3r06_A           10 SLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESEDIGSYYCQ   89 (213)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcccCEEEEEe
Confidence            568889999999999988888899999843110 0              0011 11   233799999999999999999


Q ss_pred             eecCC
Q psy7616          80 ATNGV   84 (147)
Q Consensus        80 ~~~~~   84 (147)
                      +.+..
T Consensus        90 ~~~~~   94 (213)
T 3r06_A           90 QYYNY   94 (213)
T ss_dssp             ECSSS
T ss_pred             cccCC
Confidence            98754

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.60  E-value=1.9e-14  Score=88.52  Aligned_cols=128  Identities=17%  Similarity=0.216  Sum_probs=79.2

Q ss_pred             ceEEeeCCeEEEEEeecCC-------CCCceEEEecCCCC-----C-------------CCce-ee-----eccceEEEe
Q psy7616          19 QLTVRKGGTITLECKASGN-------PVPSIIWSKKDSSL-----P-------------SGEK-SL-----EGFSITLEK   67 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-------~~~~v~w~~~~~~~-----~-------------~~~~-~~-----~~~~l~~~~   67 (147)
                      .+.+..|+.+.|.|.+.+.       +.+.+.|++++...     .             .... ..     ....|.|.+
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   88 (214)
T 2zg1_A            9 SVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGD   88 (214)
T ss_dssp             EEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             EEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEEEcc
Confidence            5688899999999997653       45679999976421     0             0011 11     123699999


Q ss_pred             ecCCCCeEEEEEeecCCCCce---EEeEEEEEeee---------------------------------ecCCCCcc----
Q psy7616          68 VDRHQAGVYQCTATNGVGDPV---TVDMTLEVLCK---------------------------------ILPSGEKS----  107 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~~~~~~---~~~~~l~v~~~---------------------------------~~~~~~~~----  107 (147)
                      ++..|+|.|.|.+.+..+...   ...+.|.|..+                                 |.+.|..+    
T Consensus        89 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~  168 (214)
T 2zg1_A           89 ARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSP  168 (214)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSS
T ss_pred             CCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCCceEEEeCCCCcc
Confidence            999999999999987542111   12333444321                                 11222221    


Q ss_pred             -----ccCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         108 -----LEGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       108 -----~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                           .....|.+..+..+|.|.|+|.|.|..+.. .+..++|.|
T Consensus       169 ~~~~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          169 LDPETTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             SCSSCCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             CCCCceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence                 122346667888899999999999986543 355666655

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.60  E-value=5.6e-15  Score=89.15  Aligned_cols=124  Identities=15%  Similarity=0.232  Sum_probs=79.3

Q ss_pred             ceEEeeCCeEEEEEeec--CCCCCceEEEe--cCCCCC------------CCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616          19 QLTVRKGGTITLECKAS--GNPVPSIIWSK--KDSSLP------------SGEKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~--~~~~~~v~w~~--~~~~~~------------~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+....|+++.|.|...  +.+.+.+.|++  ++..+.            .......+..|.|.+++..|+|.|.|.+.+
T Consensus         8 ~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~~ngsL~I~~v~~~DsG~Y~c~~~n   87 (182)
T 1hnf_A            8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYD   87 (182)
T ss_dssp             EEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEECTTSCEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEECCCCCEEECCCChhhCEEEEEEEEe
Confidence            45778899999999542  23567899999  776541            111233556899999999999999999998


Q ss_pred             CCCCce-EEeEEEEEeee---ecCCCCc-c------------------ccCCce-----EE-eecCCCCCeEEEEEeecC
Q psy7616          83 GVGDPV-TVDMTLEVLCK---ILPSGEK-S------------------LEGFSI-----TL-EKVDRHQAGVYQCTATNG  133 (147)
Q Consensus        83 ~~~~~~-~~~~~l~v~~~---~~~~~~~-~------------------~~~~~~-----~l-~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..+... ...+.|.|..+   |.+.... .                  ..|..+     .+ .....+|+|.|+|.|.|.
T Consensus        88 ~~g~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l~~~~~~i~~~~~~~d~G~Y~C~a~N~  167 (182)
T 1hnf_A           88 TKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQRVITHKWTTSLSAKFKCTAGNK  167 (182)
T ss_dssp             TTSCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEESSCEEEEESSCEEEECCSCEEEEEEEEEECS
T ss_pred             CCCceeEEEEEEEEEcCcCCCCEEEEccCcEEEEeEccCCCCCEEEEEECCEECCCCCcEEEEecccCCCcEEEEEEEeC
Confidence            766532 24455555432   2221111 0                  111111     11 133478999999999999


Q ss_pred             CCCCcCeeeE
Q psy7616         134 VGDPVTVDMT  143 (147)
Q Consensus       134 ~g~~~~~~~~  143 (147)
                      .|.. +....
T Consensus       168 ~~~~-~s~~~  176 (182)
T 1hnf_A          168 VSKE-SSVEP  176 (182)
T ss_dssp             SCEE-EEEEE
T ss_pred             CCCc-EEcce
Confidence            9977 44443

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.60  E-value=1.7e-14  Score=92.44  Aligned_cols=121  Identities=14%  Similarity=0.189  Sum_probs=76.8

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEee-
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC-   98 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~-   98 (147)
                      ..+..|+.+.|.|.+. .|.+.+.|++................+    ....|+|.|.|.+.+..+...+..+.+.+.. 
T Consensus       105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~~~~~----~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~  179 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQRGF----SGIFEDRSYICKTTIGDREVDSDAYYVYRLQV  179 (289)
T ss_dssp             EEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEETTTEE----EECCCSSEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecCCcCe----eeeccCcEEEEEEEeCCceeeeeeEEEEecCC
Confidence            5688899999999988 577889999865222211111111111    1357899999999865433222222333221 


Q ss_pred             ------------------------------eecCCCCcc--------------c------cCCceEEeecCCCCCeEEEE
Q psy7616          99 ------------------------------KILPSGEKS--------------L------EGFSITLEKVDRHQAGVYQC  128 (147)
Q Consensus        99 ------------------------------~~~~~~~~~--------------~------~~~~~~l~~~~~~d~G~Y~C  128 (147)
                                                    .|.+.|..+              .      ....|.+.+++.+|+|.|+|
T Consensus       180 ~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  259 (289)
T 3mjg_X          180 SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTC  259 (289)
T ss_dssp             CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEE
T ss_pred             CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEE
Confidence                                          123344311              0      11357778999999999999


Q ss_pred             EeecCCCCCcCeeeEEEE
Q psy7616         129 TATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       129 ~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.|..|.. +..+.|+|
T Consensus       260 ~a~N~~G~~-~~~~~l~v  276 (289)
T 3mjg_X          260 NVTESVNDH-QDEKAINI  276 (289)
T ss_dssp             EEEETTTTE-EEEEEEEE
T ss_pred             EeecCCCCc-eeEEEEEE
Confidence            999999988 77777776

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.59  E-value=7.8e-17  Score=115.37  Aligned_cols=136  Identities=18%  Similarity=0.264  Sum_probs=0.0

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-------------------------eeecc
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-------------------------SLEGF   61 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-------------------------~~~~~   61 (147)
                      .+|.+...+.   ..+..|+.+.|.|.+.+.+.+.+.|++++..+.....                         .....
T Consensus       549 ~~p~i~~~p~---~~~~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  625 (772)
T 3v2a_R          549 RGPEITLQPD---MQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDIL  625 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCceeeccCC---cccccCCceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceE
Confidence            3555544443   2567899999999999888899999998765421110                         00122


Q ss_pred             ceEEEeecCCCCeEEEEEeecCCCCc-eEEeEEEEE--ee-----------------------------eecCCCCcc--
Q psy7616          62 SITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV--LC-----------------------------KILPSGEKS--  107 (147)
Q Consensus        62 ~l~~~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v--~~-----------------------------~~~~~~~~~--  107 (147)
                      .|.|.++...|+|.|.|.+.|..+.. ......+.+  ..                             +|.+.|.++  
T Consensus       626 ~L~i~~~~~~d~G~Y~C~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g~  705 (772)
T 3v2a_R          626 IMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNE  705 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEECCCCccCCcEEEEEEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECCe
Confidence            48899999999999999999854322 111122222  11                             234445443  


Q ss_pred             -----------ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 -----------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 -----------~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                                 ..+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       706 ~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V  754 (772)
T 3v2a_R          706 TLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCA-KVEAFFII  754 (772)
T ss_dssp             --------------------------------------------------
T ss_pred             ECcCCCCeEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcce-eEEEEEEE
Confidence                       114567778999999999999999999988 66787776

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.59  E-value=5.4e-14  Score=97.02  Aligned_cols=134  Identities=16%  Similarity=0.213  Sum_probs=87.8

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCC--ceEEEecCCCCCCCcee-----------eeccceEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP--SIIWSKKDSSLPSGEKS-----------LEGFSITLEKVDRHQA   73 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~v~w~~~~~~~~~~~~~-----------~~~~~l~~~~~~~~~~   73 (147)
                      .+|.+...+..  .....|+.+.|.|.+.+.+++  .+.|++++..+......           .....|.|.++...|+
T Consensus       113 ~~P~~~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  190 (523)
T 2rcj_C          113 ANPTVTLFPPS--SEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSH  190 (523)
T ss_pred             cCCeEEecCCc--ccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCC
Confidence            35666555543  255678999999999887654  89999999877543211           0113588999999999


Q ss_pred             eEEEEEeecCCCCceEEeEE-----------------------------EE--Eee--e-e-cCCCCccc----------
Q psy7616          74 GVYQCTATNGVGDPVTVDMT-----------------------------LE--VLC--K-I-LPSGEKSL----------  108 (147)
Q Consensus        74 g~y~C~~~~~~~~~~~~~~~-----------------------------l~--v~~--~-~-~~~~~~~~----------  108 (147)
                      |.|.|.+.+..+.. ...+.                             |.  +..  | | .+.|.++.          
T Consensus       191 G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~  269 (523)
T 2rcj_C          191 RSYSCQVTHEGSTV-EKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPA  269 (523)
T ss_pred             ceEEEEEEecCccc-ccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCc
Confidence            99999998854432 11110                             00  101  1 2 34565441          


Q ss_pred             ---cCC------ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616         109 ---EGF------SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE  145 (147)
Q Consensus       109 ---~~~------~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~  145 (147)
                         .++      .|.+.+++.+| |.|+|.|.|..|.. +..+.|.
T Consensus       270 ~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~-~~~~~l~  313 (523)
T 2rcj_C          270 VLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT-KVDKRVE  313 (523)
T ss_pred             EecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCc-ceEEecC
Confidence               111      57778889999 99999999999976 5555554

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.59  E-value=2.2e-14  Score=92.82  Aligned_cols=119  Identities=19%  Similarity=0.223  Sum_probs=76.9

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEecCCCCCCC------------------ce-----eeeccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSG------------------EK-----SLEGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~~~------------------~~-----~~~~~~l~~~~~~~~~~g   74 (147)
                      ++.+..|+.+.|.|.+.+. +.+.+.|++++......                  +.     ......|.|.+++..|+|
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   87 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG   87 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence            4578899999999987643 44569999876442110                  00     012346999999999999


Q ss_pred             EEEEEeecCCCCceEEeEEEEEeee--------------------------------ecCCCCcc----------cc---
Q psy7616          75 VYQCTATNGVGDPVTVDMTLEVLCK--------------------------------ILPSGEKS----------LE---  109 (147)
Q Consensus        75 ~y~C~~~~~~~~~~~~~~~l~v~~~--------------------------------~~~~~~~~----------~~---  109 (147)
                      .|.|.+.+......+..+.+.+...                                |.+.|..+          ..   
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~~~  167 (308)
T 4fom_A           88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPNET  167 (308)
T ss_dssp             EEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTTSC
T ss_pred             EEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeeeec
Confidence            9999998754332233333333221                                22233322          00   


Q ss_pred             ---CCceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         110 ---GFSITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       110 ---~~~~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                         ...+.+.+++..|+|.|+|.|.|..|..
T Consensus       168 ~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~  198 (308)
T 4fom_A          168 ATIISQYKLFPTRFARGRRITCVVKHPALEK  198 (308)
T ss_dssp             EEEEEEEEECCCGGGTTCEEEEEEECTTCSS
T ss_pred             ccccccceEEeeeecCCccEEEEEEccCCCC
Confidence               0135567888999999999999998766

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.59  E-value=1.7e-15  Score=98.75  Aligned_cols=126  Identities=18%  Similarity=0.279  Sum_probs=79.7

Q ss_pred             ceEEeeCCeEEEEEeecCC----CCCceEEEecCCC-------------------CCCCce----eeeccceEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASGN----PVPSIIWSKKDSS-------------------LPSGEK----SLEGFSITLEKVDRH   71 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~----~~~~v~w~~~~~~-------------------~~~~~~----~~~~~~l~~~~~~~~   71 (147)
                      .+.+..|+.+.|.|.+.+.    +.+.+.|++++..                   ......    ......|.|.+++..
T Consensus        23 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~  102 (331)
T 3u83_A           23 SMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGTIRLSRLELE  102 (331)
T ss_dssp             EEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCCEEECSCCGG
T ss_pred             cEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCceEEEcccCcc
Confidence            5788999999999998775    3446999995421                   000111    113457999999999


Q ss_pred             CCeEEEEEeec-CCCCceEEeEEEEEeeeecC-----------------------------------CCCcc--------
Q psy7616          72 QAGVYQCTATN-GVGDPVTVDMTLEVLCKILP-----------------------------------SGEKS--------  107 (147)
Q Consensus        72 ~~g~y~C~~~~-~~~~~~~~~~~l~v~~~~~~-----------------------------------~~~~~--------  107 (147)
                      |+|.|.|.+.+ ..+. ....+.+.|..+|.+                                   .|...        
T Consensus       103 D~G~Y~C~~~~~~~~~-~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~  181 (331)
T 3u83_A          103 DEGVYICEFATFPTGN-RESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ  181 (331)
T ss_dssp             GCEEEEEEEEEETTEE-EEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEE
T ss_pred             cCcEEEEEEEecCCCc-cEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccc
Confidence            99999998543 3332 244445555443322                                   22211        


Q ss_pred             ---ccCC------ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 ---LEGF------SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 ---~~~~------~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                         ....      .+.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus       182 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~l~V  228 (331)
T 3u83_A          182 EIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF-KESLTLNV  228 (331)
T ss_dssp             EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEE-EEEEECCE
T ss_pred             eeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcc-eeeEEEEE
Confidence               0011      13334558899999999999998876 66666655

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.58  E-value=2e-14  Score=80.66  Aligned_cols=94  Identities=22%  Similarity=0.460  Sum_probs=73.6

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-c-e-eee----ccceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-E-K-SLE----GFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-~-~-~~~----~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+|.|...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+... . . ...    ...|.|.++...|+|.|.|.
T Consensus        14 ~~p~f~~~p~--~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   91 (116)
T 2kkq_A           14 RAPMFIYKPQ--SKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVS   91 (116)
T ss_dssp             BCCCBSSCCC--CEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEE
T ss_pred             CCCeEEeCCC--cEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEE
Confidence            4677777666  568999999999999999899999999998776531 1 1 111    12799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeeeecCC
Q psy7616          80 ATNGVGDPVTVDMTLEVLCKILPS  103 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~  103 (147)
                      +.|..+.. ...+.|.|..+|...
T Consensus        92 a~N~~G~~-~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           92 AVNEAGVT-TCNTRLDVTARPNQT  114 (116)
T ss_dssp             EEETTEEE-EEEEEEEEECCSCCC
T ss_pred             EEcCCCeE-EEEEEEEEeCCCCCC
Confidence            99988764 677778887766543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.58  E-value=7.8e-14  Score=87.13  Aligned_cols=65  Identities=31%  Similarity=0.580  Sum_probs=47.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC-------------------CCCCCceee----eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS-------------------SLPSGEKSL----EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~-------------------~~~~~~~~~----~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|+.++|.|. .+.+.+.+.|++...                   .........    ....|.|.+++..|+|.
T Consensus         9 ~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~   87 (238)
T 2p1y_A            9 NKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELATPSQTSV   87 (238)
T ss_dssp             EEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCCGGGCEE
T ss_pred             ceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCCcccCee
Confidence            568899999999999 667888999999521                   111111111    23469999999999999


Q ss_pred             EEEEeecCC
Q psy7616          76 YQCTATNGV   84 (147)
Q Consensus        76 y~C~~~~~~   84 (147)
                      |.|.+.+..
T Consensus        88 Y~C~~~~~~   96 (238)
T 2p1y_A           88 YFCASGDLG   96 (238)
T ss_dssp             EEEEEEC--
T ss_pred             EEEEEEeCC
Confidence            999998763

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.58  E-value=9.1e-14  Score=88.87  Aligned_cols=73  Identities=22%  Similarity=0.478  Sum_probs=52.1

Q ss_pred             ceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCC----------------CCCceee---eccceEEEeecC
Q psy7616          10 SIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL----------------PSGEKSL---EGFSITLEKVDR   70 (147)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~----------------~~~~~~~---~~~~l~~~~~~~   70 (147)
                      .+...|.  .+.+..|+.++|.|.+.+.+.+.+.|++.....                .......   ....|.|.+++.
T Consensus        14 ~v~~~p~--~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           14 QMTQSPS--SLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CEEEECS--EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             eEEeCCC--eEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            3444444  567889999999999988888899999864211                0011111   122699999999


Q ss_pred             CCCeEEEEEeecCC
Q psy7616          71 HQAGVYQCTATNGV   84 (147)
Q Consensus        71 ~~~g~y~C~~~~~~   84 (147)
                      .|+|.|.|.+.+..
T Consensus        92 ~DsG~Y~C~~~n~~  105 (276)
T 3auv_A           92 EDFATYYCQQHYTT  105 (276)
T ss_dssp             GGCEEEEEEECSSS
T ss_pred             hhCEEEEEEEecCC
Confidence            99999999998753

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=81.82  Aligned_cols=93  Identities=19%  Similarity=0.330  Sum_probs=70.4

Q ss_pred             eCCceEEcC-CCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-e---eccceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSP-SNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-L---EGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-~---~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .+|.+.... ....+.+..|+.+.|.|.+.+.|.+.+.|++++..+...... .   ....|.|.++...|+|.|.|.+.
T Consensus        20 ~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   99 (118)
T 2e7c_A           20 EPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ   99 (118)
T ss_dssp             EEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEEEEE
T ss_pred             cCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEEEEE
Confidence            466664431 234678999999999999999999999999998877532221 1   23459999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeee
Q psy7616          82 NGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~  100 (147)
                      |..+.. ...+.+.|...|
T Consensus       100 N~~G~~-~~~~~l~V~~~P  117 (118)
T 2e7c_A          100 IENMKD-TATIRIRVVEKA  117 (118)
T ss_dssp             CSSCEE-CCEEEEEEECCC
T ss_pred             eCCCeE-EEEEEEEEEcCC
Confidence            988764 667777776554

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=79.38  Aligned_cols=89  Identities=22%  Similarity=0.438  Sum_probs=69.6

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--eeccceEEEeecCCCCeEEEEEeec
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+......  .....|.|.++...|+|.|.|.+.|
T Consensus         8 ~~~~P~~~~~~~--~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   85 (99)
T 2yr3_A            8 MEVAPSFSSVLK--DCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAEN   85 (99)
T ss_dssp             CCEEEEEEECCC--CEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEETTEEEEEECSCCTTCCBCEEEEEEC
T ss_pred             cccCCceeecCC--CCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEeeCCeEEEEECCCChhhCEEEEEEEEE
Confidence            446788877765  568999999999999998899999999998877543322  2345799999999999999999999


Q ss_pred             CCCCceEEeEEEEE
Q psy7616          83 GVGDPVTVDMTLEV   96 (147)
Q Consensus        83 ~~~~~~~~~~~l~v   96 (147)
                      ..+.. +..+.|.|
T Consensus        86 ~~g~~-~~~~~l~V   98 (99)
T 2yr3_A           86 ALGQV-SCSAWVTV   98 (99)
T ss_dssp             SSCEE-EEECCEEE
T ss_pred             CCCeE-EEEEEEEE
Confidence            88764 55544443

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.57  E-value=1e-14  Score=78.59  Aligned_cols=86  Identities=24%  Similarity=0.382  Sum_probs=66.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCCCCcee---eeccceEEEeecCCCCeEEEEEeec
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLPSGEKS---LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +|.+...+.  ...+..|+.+.|.|.+.|.|.|.+.|++++  ..+......   .....|.|.++...|+|.|.|.+.|
T Consensus         2 ~P~i~~~~~--~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   79 (93)
T 1wit_A            2 KPKILTASR--KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCC--EEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEcCCC--ceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEecCCEEEEEECCCChhcCEEEEEEEEc
Confidence            677744433  678999999999999999999999999998  776543322   1235688999999999999999999


Q ss_pred             CCCCceEEeEEEEE
Q psy7616          83 GVGDPVTVDMTLEV   96 (147)
Q Consensus        83 ~~~~~~~~~~~l~v   96 (147)
                      ..|.. +..+.|.|
T Consensus        80 ~~G~~-~~~~~l~V   92 (93)
T 1wit_A           80 ELGED-EAIFEVIV   92 (93)
T ss_dssp             TTEEE-EEEEEEEE
T ss_pred             CCCeE-EEEEEEEE
Confidence            88764 55555544

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.57  E-value=4e-14  Score=91.32  Aligned_cols=118  Identities=20%  Similarity=0.269  Sum_probs=87.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee-----eccceEEEe-ecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL-----EGFSITLEK-VDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~-----~~~~l~~~~-~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+.......     ....|.+.+ +...|.|.|.|.+.|..|.. ...+
T Consensus       113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~-~~~~  191 (305)
T 2nzi_A          113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTV  191 (305)
T ss_dssp             CEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEE-EEEE
T ss_pred             cEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCce-eeEE
Confidence            4567889999999999998999999999988775432211     235688888 99999999999999988764 5666


Q ss_pred             EEEEeeeecCC----------------CCc-c---------------------------ccCCceEEeecCCCCCeEEEE
Q psy7616          93 TLEVLCKILPS----------------GEK-S---------------------------LEGFSITLEKVDRHQAGVYQC  128 (147)
Q Consensus        93 ~l~v~~~~~~~----------------~~~-~---------------------------~~~~~~~l~~~~~~d~G~Y~C  128 (147)
                      .+.+...|..+                |.. .                           .....+.+.++...|.|.|+|
T Consensus       192 ~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~~~~~~~~~~i~~l~~~~~y~~~~  271 (305)
T 2nzi_A          192 ELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRVGQARETRYTVINLFGKTSYQFRV  271 (305)
T ss_dssp             EEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEEEEESSSEEEECSCCSSCEEEEEE
T ss_pred             EEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEECccccCceEEecCCCCCCeEEEEE
Confidence            66666444322                110 0                           112345668899999999999


Q ss_pred             EeecCCCCC
Q psy7616         129 TATNGVGDP  137 (147)
Q Consensus       129 ~a~n~~g~~  137 (147)
                      .|.|..|..
T Consensus       272 ~A~N~~G~~  280 (305)
T 2nzi_A          272 IAENKFGLS  280 (305)
T ss_dssp             EEEETTEEC
T ss_pred             EEEeCCccc
Confidence            999999866

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.57  E-value=5.1e-14  Score=89.37  Aligned_cols=123  Identities=16%  Similarity=0.194  Sum_probs=81.9

Q ss_pred             EEeeCCeEEEEEeecC-CCCC--ceEEEecCCCCCCCceeeeccceEEEee---cCCCCeE--EEEEeecCCCCceEEeE
Q psy7616          21 TVRKGGTITLECKASG-NPVP--SIIWSKKDSSLPSGEKSLEGFSITLEKV---DRHQAGV--YQCTATNGVGDPVTVDM   92 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~-~~~~--~v~w~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~g~--y~C~~~~~~~~~~~~~~   92 (147)
                      .+..|+.+.|.|.+.+ .|.+  .+.|++++..+... .......+.+...   ...|+|.  |.|.+.+..+.. ...+
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~~-~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~-~~~~   91 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-VTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQ   91 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCCE-EEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEE-EEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCce-EeeCCCeEEEEeecccccccCCcceEEEEEecCCCCc-EEEE
Confidence            6889999999999988 6666  89999999877542 2223344555544   6678775  999999876653 5556


Q ss_pred             EEEEeeee---------------------------cCCCCcc------ccCCceEEeecCCCCCeEEEEEeecCC-CCCc
Q psy7616          93 TLEVLCKI---------------------------LPSGEKS------LEGFSITLEKVDRHQAGVYQCTATNGV-GDPV  138 (147)
Q Consensus        93 ~l~v~~~~---------------------------~~~~~~~------~~~~~~~l~~~~~~d~G~Y~C~a~n~~-g~~~  138 (147)
                      .|.+...|                           .+.| ..      .....+.+..+..+|.|.|+|.|.|.. |...
T Consensus        92 ~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~p~~~i~W-~g~~~~~~~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~  170 (265)
T 2oz4_A           92 TVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTL-NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLI  170 (265)
T ss_dssp             EEEEECCCCCEEEESCSEEETTCEEEEEEECCTTSEEEE-SSCSSSCCSSEECCEEECCGGGTTEEEEEEEEEECSSSEE
T ss_pred             EEEEeCCCCceeecCCceecCCCcEEEEEEccCCCEEEE-CCEEccCCCCcEEEEEccccccCCceEEEEEEcCCCCCcc
Confidence            66664321                           1223 11      112235667788899999999998654 6652


Q ss_pred             --CeeeEEEE
Q psy7616         139 --TVDMTLEV  146 (147)
Q Consensus       139 --~~~~~l~V  146 (147)
                        +..+.|.|
T Consensus       171 ~~s~~~~l~V  180 (265)
T 2oz4_A          171 HKNQTRELRV  180 (265)
T ss_dssp             EEEEEEEEEE
T ss_pred             cccccEEEEE
Confidence              25566665

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.57  E-value=5.4e-14  Score=88.70  Aligned_cols=75  Identities=21%  Similarity=0.425  Sum_probs=52.9

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCC-----CCceEEEecC--CCC--------------CCCceee---eccce
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP-----VPSIIWSKKD--SSL--------------PSGEKSL---EGFSI   63 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~v~w~~~~--~~~--------------~~~~~~~---~~~~l   63 (147)
                      ++.+...+.  .+.+..|+.++|.|.+.+.+     .+.+.|++..  ..+              .......   ....|
T Consensus        38 ~~~~~~~p~--~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L  115 (254)
T 2c1o_A           38 ELVMTQSPL--TLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTL  115 (254)
T ss_dssp             CCCEEEECS--EEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEE
T ss_pred             ceeEEeCCc--eEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEE
Confidence            455555454  56889999999999998876     3789999843  211              0111111   12369


Q ss_pred             EEEeecCCCCeEEEEEeecCC
Q psy7616          64 TLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        64 ~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .|.+++..|+|.|.|.+.+..
T Consensus       116 ~I~~v~~~D~G~Y~C~a~n~~  136 (254)
T 2c1o_A          116 KISRVEAEDLGIYYCVQGSHF  136 (254)
T ss_dssp             EESSCCGGGCSEEEEEECSSS
T ss_pred             EECcCCcccCEEEEEEEEcCc
Confidence            999999999999999998763

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.57  E-value=2.5e-14  Score=96.96  Aligned_cols=81  Identities=14%  Similarity=0.218  Sum_probs=60.1

Q ss_pred             eeEEeCCceE-EcCCCCceEEeeCCeEEEEEeecCCCCC---ceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEE
Q psy7616           3 QLQMVPPSIR-TSPSNGQLTVRKGGTITLECKASGNPVP---SIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVY   76 (147)
Q Consensus         3 ~~~~~~p~~~-~~~~~~~~~~~~g~~~~l~C~~~~~~~~---~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y   76 (147)
                      ..+..+|.+. ..+.  ...+..|+.+.|.|.+.+.+.+   .+.|++++..+.....  ......|.|.++...|+|.|
T Consensus        80 l~V~~~P~~~~~~~~--~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y  157 (450)
T 1z7z_I           80 LTVYWTPERVELAPL--PSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANF  157 (450)
T ss_dssp             EEEEBCCSEEEECCC--CSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEE
T ss_pred             EEEEeCCCcceecCC--CceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEEEEEeeccccCceE
Confidence            3455677665 3443  3478899999999999988877   8999999876643221  12235789999999999999


Q ss_pred             EEEeecCCC
Q psy7616          77 QCTATNGVG   85 (147)
Q Consensus        77 ~C~~~~~~~   85 (147)
                      .|.+.|..+
T Consensus       158 ~C~a~n~~g  166 (450)
T 1z7z_I          158 SCRTELDLR  166 (450)
T ss_dssp             EEEEEEECG
T ss_pred             EEEEEcccC
Confidence            999998643

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.57  E-value=5.3e-14  Score=89.01  Aligned_cols=66  Identities=24%  Similarity=0.466  Sum_probs=48.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCC-----------------CCcee-----eeccceEEEeecCCCCeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP-----------------SGEKS-----LEGFSITLEKVDRHQAGVY   76 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~-----------------~~~~~-----~~~~~l~~~~~~~~~~g~y   76 (147)
                      .+.+..|+.++|.|.+.+.+.+.+.|++......                 .....     .....|.|.+++..|+|.|
T Consensus        12 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~DsG~Y   91 (256)
T 3tf7_C           12 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASVHRSDSAVY   91 (256)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSCCGGGCSEE
T ss_pred             eEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCCCcccCEEE
Confidence            5688999999999999888888999998431110                 00001     1233589999999999999


Q ss_pred             EEEeecCC
Q psy7616          77 QCTATNGV   84 (147)
Q Consensus        77 ~C~~~~~~   84 (147)
                      .|.+.+..
T Consensus        92 ~C~~~~~~   99 (256)
T 3tf7_C           92 FCAVSAKG   99 (256)
T ss_dssp             EEEEECTT
T ss_pred             EEEEecCC
Confidence            99998754

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.57  E-value=8.3e-15  Score=95.58  Aligned_cols=123  Identities=10%  Similarity=0.087  Sum_probs=71.5

Q ss_pred             EEeeCCeEEEEEeecCCCCC--ceEEEecCCCCCCCce----------eeeccceEEEeecCCCCeEEEEEeecCCCCc-
Q psy7616          21 TVRKGGTITLECKASGNPVP--SIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGVYQCTATNGVGDP-   87 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~--~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~-   87 (147)
                      .+..|+.+.|.|.+.+.+.+  .+.|++++..+.....          ....+.|.+......+.|.|.|.+.|..+.. 
T Consensus       128 ~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~  207 (327)
T 2wng_A          128 RATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGD  207 (327)
T ss_dssp             CBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSC
T ss_pred             ccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCC
Confidence            56789999999998877655  8999999987754321          1112245666555566799999999865431 


Q ss_pred             -eEEeEEE---------------------------EEe--eee--cCCCCcc--------------c-cC-----CceEE
Q psy7616          88 -VTVDMTL---------------------------EVL--CKI--LPSGEKS--------------L-EG-----FSITL  115 (147)
Q Consensus        88 -~~~~~~l---------------------------~v~--~~~--~~~~~~~--------------~-~~-----~~~~l  115 (147)
                       ......+                           .+.  .++  .+.|..+              . .|     ..|.+
T Consensus       208 ~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i  287 (327)
T 2wng_A          208 PLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLV  287 (327)
T ss_dssp             CEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC
T ss_pred             cccceEEeccccCCCCEEEEecCCcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEE
Confidence             1111111                           001  112  2455443              0 01     12445


Q ss_pred             eecCCCCCeEEEEEeecCCCCCcCeeeE
Q psy7616         116 EKVDRHQAGVYQCTATNGVGDPVTVDMT  143 (147)
Q Consensus       116 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~  143 (147)
                      ..++.+|+|.|+|.|.|..|...+..+.
T Consensus       288 ~~~~~~d~G~Y~C~a~N~~~~~~s~~~~  315 (327)
T 2wng_A          288 NVSAHRDDVKLTCQVEHDGQPAVSKSHD  315 (327)
T ss_dssp             -------CCEEEEEEEETTCCCEEEEEE
T ss_pred             ccccccCCCEEEEEEEeCCCCCchhheE
Confidence            6778899999999999999877555443

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.56  E-value=9.5e-15  Score=87.31  Aligned_cols=121  Identities=16%  Similarity=0.152  Sum_probs=78.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCC--------------Ccee-eeccceEEEeecCCCCeEEEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS--------------GEKS-LEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~--------------~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+.+..|++++|.|...+ +.+.+.|++++..+..              .... ..+..|.|.+++..|+|.|.|.+.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~DsG~Y~C~~~n~   82 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCCeEEECCCChhhCceEEEEEeCC
Confidence            346788999999998854 7889999998753210              0011 14468999999999999999999876


Q ss_pred             CCCceEEeEEEEEeeeec---C---------------------CCCcc----ccCCceEEeecCCCCCeEEEEEeecCCC
Q psy7616          84 VGDPVTVDMTLEVLCKIL---P---------------------SGEKS----LEGFSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus        84 ~~~~~~~~~~l~v~~~~~---~---------------------~~~~~----~~~~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      .+   ...+.|.|..++.   +                     .|..+    .....+.+.....+|+|.|+|.|.|..|
T Consensus        83 ~~---~~~~~L~V~~~~~~p~i~~~~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~~~~~l~~~~~~~~g~Y~C~a~N~~~  159 (171)
T 1ccz_A           83 TD---TMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAVNRVS  159 (171)
T ss_dssp             CS---CEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEESSSEEEEECSCCSSCEEEEEEETTE
T ss_pred             CC---cEEEEEEEECcCCCCEEEEecCCcEEEEEeCCCCCcEEEEEECCEECcCCcceEEEEeccCCCceEEEEEEcccC
Confidence            55   3445555544321   1                     11111    0001112233346788999999999998


Q ss_pred             CCcCeeeEE
Q psy7616         136 DPVTVDMTL  144 (147)
Q Consensus       136 ~~~~~~~~l  144 (147)
                      .. +..+.|
T Consensus       160 ~~-~~~~~l  167 (171)
T 1ccz_A          160 QE-SEMEVV  167 (171)
T ss_dssp             EE-EEEECC
T ss_pred             cc-cceeEE
Confidence            76 555544

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3.4e-14  Score=79.83  Aligned_cols=93  Identities=33%  Similarity=0.551  Sum_probs=73.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC---ceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG---EKSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.+.+.+.|++++..+...   ......+.|.|.++...|+|.|.|.+.|.
T Consensus         7 ~pP~i~~~p~--~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~   84 (118)
T 2eo9_A            7 GPPVIRQGPV--NQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTP   84 (118)
T ss_dssp             CSCCCSBCCC--CEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEEETTEEEEESCCGGGCCCEEEEEECS
T ss_pred             CCCEEEcCCC--CEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEccCCEEEEccCCcCCCEEEEEEEEcC
Confidence            4677766655  568999999999999999899999999998877431   12345668999999999999999999998


Q ss_pred             CCCceEEeEEEEEeeeecC
Q psy7616          84 VGDPVTVDMTLEVLCKILP  102 (147)
Q Consensus        84 ~~~~~~~~~~l~v~~~~~~  102 (147)
                      .+.. ...+.|.|..++.+
T Consensus        85 ~g~~-~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           85 SGEA-TWSAYIEVQEFGVP  102 (118)
T ss_dssp             SCEE-EEECCEEEECCSCC
T ss_pred             CCcE-EEEEEEEEEeCCCC
Confidence            8774 66666777665543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.56  E-value=5.1e-14  Score=93.66  Aligned_cols=132  Identities=19%  Similarity=0.299  Sum_probs=91.1

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc--e--ee---eccceEEEeecCCCCeE
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--K--SL---EGFSITLEKVDRHQAGV   75 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~--~~---~~~~l~~~~~~~~~~g~   75 (147)
                      +.+..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+....  .  ..   ....|.|.++...|+|.
T Consensus        95 l~V~~~P~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  172 (389)
T 2jll_A           95 LDIEYAPKFISNQT--IYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGR  172 (389)
T ss_dssp             EEEEEEEEECCSCC--EEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEECSSCEEEEECCCSTTSSEE
T ss_pred             EEEEeCCEEecCcc--eEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEeccCCEEEEEECCCChhhCEE
Confidence            34556776654332  3367889999999999998999999999987775432  1  11   23468999999999999


Q ss_pred             EEEEeecCCCCceEEeEEEEEeeeecCC----------------CC------------------cc-----------ccC
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLCKILPS----------------GE------------------KS-----------LEG  110 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~~~~~~----------------~~------------------~~-----------~~~  110 (147)
                      |.|.+.|..|.. ...+.+.+...|..+                |.                  ..           ...
T Consensus       173 Y~C~a~N~~G~~-~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~~~~g~pi~~y~v~~~~~~~~~~~~~~~~~~~  251 (389)
T 2jll_A          173 YNCTATNHIGTR-FQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKEVASEIWKIVRSHGVQ  251 (389)
T ss_dssp             EEEEEEETTEEE-EEEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCSCCTTSCEEEEEEEEEETTCSCCEEEECSTTC
T ss_pred             EEEEEEcCCCcE-EEEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCCCCCCcceEEEEEEEEECCCcccEEeeccCCc
Confidence            999999987664 444444433222111                10                  00           011


Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      ..+.+.+++..|.+.|+|.|.|..|..
T Consensus       252 ~~~~i~~l~~~~~y~~~v~A~N~~G~~  278 (389)
T 2jll_A          252 TMVVLNNLEPNTTYEIRVAAVNGKGQG  278 (389)
T ss_dssp             SEEEECSCCTTCEEEEEEEEEESSCBC
T ss_pred             ceEEECCccCCCEEEEEEEEEcCCccC
Confidence            346668899999999999999999865

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.56  E-value=2e-14  Score=78.80  Aligned_cols=90  Identities=18%  Similarity=0.258  Sum_probs=70.3

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--e---eccceEEEeecCCCCeEEEEEe
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--L---EGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~---~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      ..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+......  .   ....|.|.++...|+|.|.|.+
T Consensus         6 ~~~P~~~~~~~--~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   83 (103)
T 3qp3_A            6 DHAPRITLRMR--SHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVC   83 (103)
T ss_dssp             CEEEEEEECCC--CEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEeCCc--ceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEE
Confidence            35777777665  568999999999999999899999999998877543221  1   1236899999999999999999


Q ss_pred             ecCCCCceEEeEEEEEee
Q psy7616          81 TNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~   98 (147)
                      .|..+.. +..+.|.|..
T Consensus        84 ~N~~G~~-~~~~~l~V~~  100 (103)
T 3qp3_A           84 TNYKGEA-SDYATLDVTG  100 (103)
T ss_dssp             EETTEEE-EEEEEEEEEC
T ss_pred             EeCCCcE-EEEEEEEEEC
Confidence            9987764 6666666654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=3.8e-14  Score=77.10  Aligned_cols=88  Identities=18%  Similarity=0.270  Sum_probs=68.3

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee------eeccceEEEeecCCCCeEEEEEe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS------LEGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+......      .....|.|.++...|+|.|.|.+
T Consensus         4 ~~P~~~~~~~--~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   81 (99)
T 1g1c_A            4 EAPKIFERIQ--SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKA   81 (99)
T ss_dssp             EEEEEEECCC--CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCceEecCc--ceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEE
Confidence            4677777665  568899999999999998899999999998877543221      12236999999999999999999


Q ss_pred             ecCCCCceEEeEEEEEe
Q psy7616          81 TNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~   97 (147)
                      .|..|.. ...+.|.|.
T Consensus        82 ~N~~g~~-~~~~~l~V~   97 (99)
T 1g1c_A           82 INIAGET-SSHAFLLVQ   97 (99)
T ss_dssp             EETTEEE-EEEEEEEEE
T ss_pred             EECCCcE-EEEEEEEEe
Confidence            9987764 556666554

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.55  E-value=2.5e-14  Score=102.49  Aligned_cols=135  Identities=22%  Similarity=0.313  Sum_probs=59.5

Q ss_pred             ceEEcCCCCceEEeeCCeEEEEEeecC--CCCCceEEEecCCCCCCCc-------------eeeeccceEEEeecCCCCe
Q psy7616          10 SIRTSPSNGQLTVRKGGTITLECKASG--NPVPSIIWSKKDSSLPSGE-------------KSLEGFSITLEKVDRHQAG   74 (147)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~l~C~~~~--~~~~~v~w~~~~~~~~~~~-------------~~~~~~~l~~~~~~~~~~g   74 (147)
                      .+...+.. ...+..|+.+.|.|.+.+  .+.+.+.|++++..+....             .......|.|.++...|+|
T Consensus       225 ~v~~~~~~-~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  303 (772)
T 3v2a_R          225 DVVLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG  303 (772)
T ss_dssp             EEEEECCS-CEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCS
T ss_pred             eeeeCCCC-ceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCe
Confidence            33444442 357899999999999876  3456799999887653211             1223457899999999999


Q ss_pred             EEEEEeecCCCCceEEeEEEEEeeeecCC--------------------------------CCcc----------ccCCc
Q psy7616          75 VYQCTATNGVGDPVTVDMTLEVLCKILPS--------------------------------GEKS----------LEGFS  112 (147)
Q Consensus        75 ~y~C~~~~~~~~~~~~~~~l~v~~~~~~~--------------------------------~~~~----------~~~~~  112 (147)
                      .|.|.+.+..+.. +..+.+.|..+|.+.                                |.++          .....
T Consensus       304 ~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~  382 (772)
T 3v2a_R          304 LYTCAASSGLMTK-KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHV  382 (772)
T ss_dssp             EEEEEEECSSCEE-EEEEEEEEECCCC-----------------------------------------------------
T ss_pred             EEEEEEEcCCcce-eEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEcccee
Confidence            9999999876653 556666665544332                                2211          01145


Q ss_pred             eEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         113 ITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      +.+.+++.+|+|.|+|.|.|..|.. .+..+.|.|
T Consensus       383 L~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v  417 (772)
T 3v2a_R          383 LTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVV  417 (772)
T ss_dssp             -----------------------------------
T ss_pred             EEEecCChhcCceEEEEEEECCcCeEEEEEEEEEE
Confidence            6668899999999999999998865 244555544

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.55  E-value=1.9e-14  Score=79.04  Aligned_cols=90  Identities=17%  Similarity=0.190  Sum_probs=67.2

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee----------eeccceEEEeecCCCCeE
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~g~   75 (147)
                      .+||.+.....     ...+..+.+.|.+.|.|.|.+.|++++..+......          ...+.|.|.++...|+|.
T Consensus         2 ~~pP~i~~~~~-----~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   76 (103)
T 1wwb_X            2 HFAPTITFLES-----PTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCCCCCCCC-----CCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             CCCCEEEeccC-----ceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEE
Confidence            46777643222     235778999999999999999999998876543221          122349999999999999


Q ss_pred             EEEEeecCCCCceEEeEEEEEeeeec
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~~~~  101 (147)
                      |+|.+.|..|.. ...+.|.+..+|.
T Consensus        77 Y~C~A~N~~G~~-~~~~~l~V~~~P~  101 (103)
T 1wwb_X           77 YTLIAKNEYGKD-EKQISAHFMGWPG  101 (103)
T ss_dssp             EEEEEECSSCEE-EEEEEECCSCCCC
T ss_pred             EEEEEEeCCCcE-eEEEEEEECCCCC
Confidence            999999998875 6777777666554

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.55  E-value=9.7e-15  Score=79.64  Aligned_cols=90  Identities=30%  Similarity=0.568  Sum_probs=68.9

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce----eeec--cceEEEeecCCCCeEEEEE
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEG--FSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~----~~~~--~~l~~~~~~~~~~g~y~C~   79 (147)
                      ..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+.....    ....  ..|.|.++...|+|.|.|.
T Consensus         3 ~~~P~~~~~p~--~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   80 (100)
T 2kdg_A            3 MGPPRFIQVPE--NMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACV   80 (100)
T ss_dssp             CEEEECCCCCC--CEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCeEEeCCC--CEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEE
Confidence            35677766654  56889999999999998889999999999876643321    1112  3789999999999999999


Q ss_pred             eecCCCCceEEeEEEEEee
Q psy7616          80 ATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~   98 (147)
                      +.|..+.. +..+.|.|..
T Consensus        81 a~n~~g~~-~~~~~l~V~~   98 (100)
T 2kdg_A           81 AKNRAGEA-TFTVQLDVLA   98 (100)
T ss_dssp             EEETTEEE-EEEEEEEEEC
T ss_pred             EEcCCCeE-EEEEEEEEEe
Confidence            99988764 6666666653

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.55  E-value=2.3e-13  Score=85.93  Aligned_cols=66  Identities=21%  Similarity=0.339  Sum_probs=46.1

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC-C-CC-------------------CCCceeee-----ccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD-S-SL-------------------PSGEKSLE-----GFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~-~-~~-------------------~~~~~~~~-----~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|.+.+.+  .+.+.|++.. . .+                   ........     ...|.|.+++.
T Consensus        10 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   89 (253)
T 3uzq_A           10 AELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHLSSLTS   89 (253)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEeCCCCc
Confidence            45788999999999987744  6789999832 1 11                   00011111     12399999999


Q ss_pred             CCCeEEEEEeecCC
Q psy7616          71 HQAGVYQCTATNGV   84 (147)
Q Consensus        71 ~~~g~y~C~~~~~~   84 (147)
                      .|+|.|.|.+.+..
T Consensus        90 ~DsG~Y~C~~~~~~  103 (253)
T 3uzq_A           90 GDTAVYYCSRGWEG  103 (253)
T ss_dssp             GGCEEEEEEECSSS
T ss_pred             ccCEEEEEEEeeCC
Confidence            99999999998743

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.54  E-value=1.5e-13  Score=85.59  Aligned_cols=66  Identities=17%  Similarity=0.430  Sum_probs=49.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCC---------------CCce-ee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP---------------SGEK-SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~---------------~~~~-~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+++.|.|.+.+.+.+.+.|++......               .... ..   ....|.|.+++..|+|.|.|.
T Consensus        33 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  112 (237)
T 3sob_L           33 SLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQ  112 (237)
T ss_dssp             EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCChhhCeEEEEe
Confidence            5688999999999999887888999998431100               0011 11   234699999999999999999


Q ss_pred             eecCC
Q psy7616          80 ATNGV   84 (147)
Q Consensus        80 ~~~~~   84 (147)
                      +.+..
T Consensus       113 ~~~~~  117 (237)
T 3sob_L          113 QSYTT  117 (237)
T ss_dssp             ECSSS
T ss_pred             eccCC
Confidence            97754

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=6.7e-14  Score=77.65  Aligned_cols=93  Identities=20%  Similarity=0.303  Sum_probs=71.9

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-ce--ee----eccceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-EK--SL----EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-~~--~~----~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+... ..  ..    ....|.|.++...|+|.|.|.
T Consensus         7 ~~P~~~~~~~--~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm2_A            7 GAPFFEMKLK--HYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIM   84 (110)
T ss_dssp             CCCCBSSCCC--CEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEE
T ss_pred             CCCEEEecCc--CeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEE
Confidence            4677766554  568999999999999999899999999998877532 11  11    112689999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeeeecC
Q psy7616          80 ATNGVGDPVTVDMTLEVLCKILP  102 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~  102 (147)
                      +.|..+.. ...+.|.|..+|..
T Consensus        85 a~N~~g~~-~~~~~l~V~~~~~~  106 (110)
T 2dm2_A           85 AANPQGRI-SCTGRLMVQAVNSG  106 (110)
T ss_dssp             EECTTCCE-EECCCEEEECCSCC
T ss_pred             EEECCCeE-EEEEEEEEECCCCC
Confidence            99988875 67777777766543

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.54  E-value=3.1e-13  Score=85.06  Aligned_cols=67  Identities=22%  Similarity=0.472  Sum_probs=49.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCC----------------CCCceee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSL----------------PSGEKSL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~----------------~~~~~~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.++|.|.+.+.+.+.+.|++.....                .......   ....|.|.++...|+|.|.|.
T Consensus        13 ~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   92 (250)
T 3esu_F           13 SLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQEDIGTYFCQ   92 (250)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChhhCEEEEEE
Confidence            567889999999999998888899999853211                0001111   122699999999999999999


Q ss_pred             eecCCC
Q psy7616          80 ATNGVG   85 (147)
Q Consensus        80 ~~~~~~   85 (147)
                      +.+..+
T Consensus        93 ~~n~~~   98 (250)
T 3esu_F           93 QGNTLP   98 (250)
T ss_dssp             ECSSSS
T ss_pred             EeeCCC
Confidence            987543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.54  E-value=2.2e-13  Score=86.12  Aligned_cols=65  Identities=18%  Similarity=0.379  Sum_probs=45.7

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCCCCC---------------------CCceee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDSSLP---------------------SGEKSL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~~~~---------------------~~~~~~-----~~~~l~~~~~~~   70 (147)
                      ...+..|+.++|.|.+.+.+  .+.+.|++......                     ......     ....|.|.++..
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (256)
T 3umt_A           11 LELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRSLTS   90 (256)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECCCCc
Confidence            34688999999999987755  57899997431100                     000011     122499999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus        91 ~DsG~Y~C~~~~~  103 (256)
T 3umt_A           91 EDSAVYYCARDDR  103 (256)
T ss_dssp             GGCEEEEEEECCS
T ss_pred             ccCEEEEEEEccC
Confidence            9999999999876

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.54  E-value=3.7e-14  Score=83.35  Aligned_cols=96  Identities=24%  Similarity=0.424  Sum_probs=73.6

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee------eccceEEEeecCCCCeEEEE
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL------EGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~g~y~C   78 (147)
                      +..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+.......      ....|.|.++...|+|.|.|
T Consensus        38 v~~~P~~~~~~~--~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  115 (154)
T 1fhg_A           38 PHVKPYFTKTIL--DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC  115 (154)
T ss_dssp             CCEEEEEEECCC--CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEE
T ss_pred             CCCCCeEEccCC--cEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEE
Confidence            345777777665  5689999999999999988999999999988775433221      13479999999999999999


Q ss_pred             EeecCCCCceEEeEEEEEeeeecCC
Q psy7616          79 TATNGVGDPVTVDMTLEVLCKILPS  103 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~l~v~~~~~~~  103 (147)
                      .+.|..+.. ...+.|.|..+|.+.
T Consensus       116 ~a~N~~G~~-~~~~~l~V~~~p~~~  139 (154)
T 1fhg_A          116 KAVNSLGEA-TCTAELLVETMGKEG  139 (154)
T ss_dssp             EEEETTEEE-EEEEEEEEECC----
T ss_pred             EEEECCCeE-EEEEEEEEeCcCcCC
Confidence            999988774 677778887766554

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.53  E-value=6e-14  Score=76.33  Aligned_cols=88  Identities=24%  Similarity=0.526  Sum_probs=67.8

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce---eeec---cceEEEeecCCCCeEEEEEe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEG---FSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~---~~~~---~~l~~~~~~~~~~g~y~C~~   80 (147)
                      .||.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+.....   ....   ..|.|.++...|+|.|.|.+
T Consensus         4 ~~P~~~~~~~--~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a   81 (99)
T 1u2h_A            4 APPTFKVSLM--DQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKA   81 (99)
T ss_dssp             EEEEEEECCC--CEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEEcCC--ceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEE
Confidence            4677777665  55889999999999999889999999999877754321   1111   25899999999999999999


Q ss_pred             ecCCCCceEEeEEEEEe
Q psy7616          81 TNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~   97 (147)
                      .|..+.. ...+.|.|.
T Consensus        82 ~N~~g~~-~~~~~l~V~   97 (99)
T 1u2h_A           82 VNEYGAR-QCEARLEVR   97 (99)
T ss_dssp             EETTEEE-EEEEEEEEE
T ss_pred             EECCCce-eEEEEEEEE
Confidence            9987764 555566553

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.8e-14  Score=79.92  Aligned_cols=94  Identities=29%  Similarity=0.542  Sum_probs=74.4

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee---e---eccceEEEeecCCCCeEEEEEe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---L---EGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~---~---~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      .+|.+...+.  .+.+..|+.+.|.|.+.+.|.+.+.|++++..+......   .   ....|.|.++...|+|.|.|.+
T Consensus         8 ~~P~i~~~~~--~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm3_A            8 FRPHFLQAPG--DLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIA   85 (110)
T ss_dssp             CCCEEEECCC--EEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEE
T ss_pred             CCCcEEeCCC--cEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEE
Confidence            5788877765  668999999999999999899999999998877543221   1   1237999999999999999999


Q ss_pred             ecCCCCceEEeEEEEEeeeecCC
Q psy7616          81 TNGVGDPVTVDMTLEVLCKILPS  103 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~~  103 (147)
                      .|..+.. +..+.|.|..+|..+
T Consensus        86 ~n~~g~~-~~~~~l~V~~~p~~P  107 (110)
T 2dm3_A           86 TNRAGQN-SFSLELVVAAKESGP  107 (110)
T ss_dssp             ECSSCEE-EECCEEEEECCCCSS
T ss_pred             ECCCCEE-EEEEEEEEeCCCCCC
Confidence            9988774 777778887766543

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.53  E-value=2.7e-13  Score=85.73  Aligned_cols=73  Identities=14%  Similarity=0.302  Sum_probs=50.1

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCC--CCCceEEEecC--CCCC------------------CCce-ee-----ec
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGN--PVPSIIWSKKD--SSLP------------------SGEK-SL-----EG   60 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~--~~~~------------------~~~~-~~-----~~   60 (147)
                      +.+...+.  .+.+..|+.++|.|.+.+.  +.+.+.|++..  ..+.                  ..+. ..     ..
T Consensus         7 ~~~~~~~~--~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            7 QVQLVQSG--AEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             CCEEEECC--CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             eEEEEecC--CceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            34444444  6789999999999998773  56789999743  1110                  0011 11     12


Q ss_pred             cceEEEeecCCCCeEEEEEeecC
Q psy7616          61 FSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        61 ~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      ..|.|.+++..|+|.|.|.+.+.
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGE  107 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCC
T ss_pred             EEEEECCCCcccCEEEEEeEEec
Confidence            25999999999999999999875

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.53  E-value=5.8e-14  Score=86.28  Aligned_cols=67  Identities=19%  Similarity=0.377  Sum_probs=48.4

Q ss_pred             ceEEeeCCeEEEEEeecCCC---CCceEEEecCC--CC--------------CCCceee---eccceEEEeecCCCCeEE
Q psy7616          19 QLTVRKGGTITLECKASGNP---VPSIIWSKKDS--SL--------------PSGEKSL---EGFSITLEKVDRHQAGVY   76 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~---~~~v~w~~~~~--~~--------------~~~~~~~---~~~~l~~~~~~~~~~g~y   76 (147)
                      .+.+..|+.+.|.|.+.+.+   .+.+.|+++..  .+              .......   ....|.|.+++..|+|.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y   88 (212)
T 1q0x_L            9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIY   88 (212)
T ss_dssp             EEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEE
T ss_pred             eEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCEEE
Confidence            55788999999999998766   36799998631  11              1111111   123799999999999999


Q ss_pred             EEEeecCCC
Q psy7616          77 QCTATNGVG   85 (147)
Q Consensus        77 ~C~~~~~~~   85 (147)
                      .|.+.+..+
T Consensus        89 ~C~~~~~~~   97 (212)
T 1q0x_L           89 FCALWSNNK   97 (212)
T ss_dssp             EEEEECSSC
T ss_pred             EEEEecCch
Confidence            999987543

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.53  E-value=1.8e-13  Score=74.35  Aligned_cols=87  Identities=23%  Similarity=0.375  Sum_probs=65.4

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      +|.+...++ ....+..|+.+.|.|.+. +.+.+.+.|++++..............|.|.+++..|+|.|.|.+.|..+.
T Consensus         9 ~~~~~~~~~-~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   87 (98)
T 1gl4_B            9 PIMVTVEEQ-RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAM   87 (98)
T ss_dssp             CEEEEECSC-CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             CcEEEEeCC-CCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceeecCCCEEEEeCCChhhCEEEEEEecCCCCc
Confidence            344444433 366889999999999987 678899999997544433334455678999999999999999999998776


Q ss_pred             ceEEeEEEEE
Q psy7616          87 PVTVDMTLEV   96 (147)
Q Consensus        87 ~~~~~~~l~v   96 (147)
                      . ...+.|.|
T Consensus        88 ~-~~~~~l~V   96 (98)
T 1gl4_B           88 D-QGTATLHV   96 (98)
T ss_dssp             E-EEEEEEEE
T ss_pred             c-ccEEEEEE
Confidence            4 55555554

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.53  E-value=1.4e-13  Score=94.94  Aligned_cols=77  Identities=17%  Similarity=0.272  Sum_probs=54.3

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC-ceEEEecCCCCCCCc---------eeeeccceEEEeecCCCCeE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP-SIIWSKKDSSLPSGE---------KSLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~g~   75 (147)
                      .+|.+....+.  ..+..|+.+.|.|.+.+. |.+ .+.|++++..+....         .....+.|.|.++...| |.
T Consensus       218 ~~P~v~~~~~~--~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~  294 (523)
T 2rcj_C          218 KGPSVFPLAPS--SKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QT  294 (523)
T ss_pred             cCCEEEecCCC--cccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ce
Confidence            34555433332  255789999999999886 667 799999987643211         01123478899999999 99


Q ss_pred             EEEEeecCCCC
Q psy7616          76 YQCTATNGVGD   86 (147)
Q Consensus        76 y~C~~~~~~~~   86 (147)
                      |.|.+.|..+.
T Consensus       295 Y~C~a~n~~g~  305 (523)
T 2rcj_C          295 YICNVNHKPSN  305 (523)
T ss_pred             EEEEEEeCCCC
Confidence            99999987665

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.53  E-value=9.6e-15  Score=94.69  Aligned_cols=118  Identities=17%  Similarity=0.200  Sum_probs=82.4

Q ss_pred             ceEEeeCCeEEEEEeecCCC-CCceEEEecCCCCCC-----CceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPS-----GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      .+.+..|+.+.|.|.+.+.+ .+.+.|++++.....     .........|.|.+++..|+|.|.|.+.+..+.. ...+
T Consensus        14 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~   92 (315)
T 1itb_B           14 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL-RIKI   92 (315)
T ss_dssp             CCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCC-CEEC
T ss_pred             EEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEE-EEEE
Confidence            56889999999999988876 678999999864321     1223345689999999999999999998865442 2222


Q ss_pred             EEEEe-ee--------------------------------------ecCCCCcc------------ccCCceEEeecCCC
Q psy7616          93 TLEVL-CK--------------------------------------ILPSGEKS------------LEGFSITLEKVDRH  121 (147)
Q Consensus        93 ~l~v~-~~--------------------------------------~~~~~~~~------------~~~~~~~l~~~~~~  121 (147)
                      .+.+. .+                                      |.+.|.++            ..+..|.+.+++.+
T Consensus        93 ~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~  172 (315)
T 1itb_B           93 SAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEK  172 (315)
T ss_dssp             CCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGG
T ss_pred             EEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCceEEEEeceeh
Confidence            22211 11                                      12223222            12346777899999


Q ss_pred             CCeEEEEEee-cCCCCC
Q psy7616         122 QAGVYQCTAT-NGVGDP  137 (147)
Q Consensus       122 d~G~Y~C~a~-n~~g~~  137 (147)
                      |+|.|+|.|. |..|..
T Consensus       173 d~G~Y~C~a~~n~~g~~  189 (315)
T 1itb_B          173 HRGNYTCHASYTYLGKQ  189 (315)
T ss_dssp             GCEEEEEEEEEEETTEE
T ss_pred             hCcEEEEEEEcCCCCcE
Confidence            9999999999 788865

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.52  E-value=8.1e-14  Score=75.77  Aligned_cols=89  Identities=30%  Similarity=0.562  Sum_probs=68.3

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--ee---ccceEEEeecCCCCeEEEEEe
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--LE---GFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~~---~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      ..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+......  ..   ...|.|.++...|+|.|.|.+
T Consensus         4 ~~~P~i~~~~~--~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   81 (99)
T 3puc_A            4 SSKPVIVTGLQ--DTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTV   81 (99)
T ss_dssp             CEEEEEEECCC--CEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCEEEecCc--cEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEE
Confidence            35677777665  568999999999999998889999999998777543221  11   226899999999999999999


Q ss_pred             ecCCCCceEEeEEEEEe
Q psy7616          81 TNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~   97 (147)
                      .|..+.. ...+.+.|.
T Consensus        82 ~n~~g~~-~~~~~l~V~   97 (99)
T 3puc_A           82 KNSAGSV-SSSCKLTIK   97 (99)
T ss_dssp             EETTEEE-EEEEEEEEE
T ss_pred             EeCCCcE-eEEEEEEEE
Confidence            9987764 556656553

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.52  E-value=1.8e-13  Score=86.50  Aligned_cols=65  Identities=17%  Similarity=0.311  Sum_probs=46.1

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCCCCC--------------------CCceee-----eccceEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDSSLP--------------------SGEKSL-----EGFSITLEKVDRH   71 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~~~~--------------------~~~~~~-----~~~~l~~~~~~~~   71 (147)
                      ...+..|+.++|.|.+.+.  +.+.+.|++......                    ......     ....|.|.+++..
T Consensus        17 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   96 (257)
T 3gkz_A           17 PSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQLKSVSSE   96 (257)
T ss_dssp             CSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEECCCChh
Confidence            3478999999999998773  467899998431100                    000111     1225999999999


Q ss_pred             CCeEEEEEeecC
Q psy7616          72 QAGVYQCTATNG   83 (147)
Q Consensus        72 ~~g~y~C~~~~~   83 (147)
                      |+|.|.|.+.+.
T Consensus        97 DsG~Y~C~~~n~  108 (257)
T 3gkz_A           97 DTATYYCSYFDS  108 (257)
T ss_dssp             GCEEEEEEEECT
T ss_pred             hCEEEEEEEecC
Confidence            999999999885

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.52  E-value=1.6e-14  Score=88.80  Aligned_cols=65  Identities=18%  Similarity=0.307  Sum_probs=47.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEec--CCCCC-------------CCce----eeeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKK--DSSLP-------------SGEK----SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~~-------------~~~~----~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.++|.|.+.  +.+.+.|++.  +....             ....    ......|.|.+++..|+|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            55788999999999987  7788999994  22210             0011    11233699999999999999999


Q ss_pred             eecCCC
Q psy7616          80 ATNGVG   85 (147)
Q Consensus        80 ~~~~~~   85 (147)
                      +.+..+
T Consensus        87 ~~~~~~   92 (211)
T 3tv3_L           87 SLVGNW   92 (211)
T ss_dssp             EEETTT
T ss_pred             EecCCC
Confidence            988654

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.52  E-value=2.2e-13  Score=85.56  Aligned_cols=65  Identities=17%  Similarity=0.370  Sum_probs=47.2

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCC--C-------------------CCCCceee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDS--S-------------------LPSGEKSL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~--~-------------------~~~~~~~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|.+.+.+  .+.+.|++...  .                   ........     ....|.|.+++.
T Consensus        11 ~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~   90 (247)
T 2ghw_B           11 GGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   90 (247)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECcCCH
Confidence            35788999999999998866  57799998431  1                   01111111     123699999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus        91 ~D~G~Y~C~~~n~  103 (247)
T 2ghw_B           91 EDTAVYYCARDRS  103 (247)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             HHCEEEEEeeecc
Confidence            9999999999876

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.51  E-value=1.6e-13  Score=82.68  Aligned_cols=122  Identities=12%  Similarity=0.119  Sum_probs=76.2

Q ss_pred             ceEEeeCCeEEEEEeecC-CCCCceEEEecC-CCC-------------CC--Cc-ee-eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASG-NPVPSIIWSKKD-SSL-------------PS--GE-KS-LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~-~~~-------------~~--~~-~~-~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|.... .+.+.+.|++.+ ..+             ..  .+ .. ..+..|.|.+++..|+|.|.|.
T Consensus         8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~sL~I~~v~~~D~G~Y~C~   87 (180)
T 2dru_A            8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMR   87 (180)
T ss_dssp             EEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTCCEEECSCCGGGCEEEEEE
T ss_pred             eEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCccEEEcCCCHHHCeEEEEE
Confidence            568899999999998744 346789999952 111             00  11 11 2456799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeeeec------------------------CCCCccc----cCCceEEeecCCCCCeEEEEEee
Q psy7616          80 ATNGVGDPVTVDMTLEVLCKIL------------------------PSGEKSL----EGFSITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~------------------------~~~~~~~----~~~~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      +.+..  .....+.|.|..++.                        +.|..+.    .....+|.....+|+|.|+|.|.
T Consensus        88 v~~~~--~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~gp~p~i~W~~~~~~l~~~~~~~l~~~~~~d~g~Y~C~a~  165 (180)
T 2dru_A           88 MLHET--EDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWTNLRAPFKCKAV  165 (180)
T ss_dssp             EESSS--EEEEEEEEEEECCCCCCEEEEEGGGTEEEEECSSCTTCEEEEEETTEEEEEESSSEEEEECSCCSSCEEEEEE
T ss_pred             EEcCC--eEEEEEEEEEECCCCCCEEEecCCCEEEEEEeCCCCCCEEEEEECCeECcCCCCCEEEEEEhhcCccEEEEEe
Confidence            87765  235556666653311                        1122110    00111222112689999999999


Q ss_pred             cCCCCCcCeeeE
Q psy7616         132 NGVGDPVTVDMT  143 (147)
Q Consensus       132 n~~g~~~~~~~~  143 (147)
                      |..|.. +....
T Consensus       166 N~~~~~-~~~~~  176 (180)
T 2dru_A          166 NRVSQE-SEMEV  176 (180)
T ss_dssp             ETTEEE-EEEEC
T ss_pred             cCcCcc-cccee
Confidence            999876 44443

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.51  E-value=1.4e-13  Score=73.80  Aligned_cols=84  Identities=23%  Similarity=0.392  Sum_probs=65.4

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      ++.+...|.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+...    ....|.|.++...|+|.|.|.+.|..+..
T Consensus         3 ~~~i~~~p~--~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~   76 (91)
T 3bfo_A            3 KLQICVEPT--SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE----TKKLYMVPYVDLEHQGTYWCHVYNDRDSQ   76 (91)
T ss_dssp             CCEEEECCC--CEEECTTSCEEEECEEECSSCCEEEEEETTEECTTC----CSSEEEESSCCGGGCEEEEEEEECSSCEE
T ss_pred             ceEEEECCC--ccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcC----CCCeEEECCCCHHhCEEEEEEEEcCCCCE
Confidence            455555555  457899999999999999899999999998776533    23578899999999999999999987754


Q ss_pred             eEEeEEEEEe
Q psy7616          88 VTVDMTLEVL   97 (147)
Q Consensus        88 ~~~~~~l~v~   97 (147)
                      .+..+.+.|.
T Consensus        77 ~s~~~~l~V~   86 (91)
T 3bfo_A           77 DSKKVEIIID   86 (91)
T ss_dssp             ECCCEEEEEC
T ss_pred             EeeeEEEEEe
Confidence            3345555553

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.51  E-value=6.6e-13  Score=83.33  Aligned_cols=66  Identities=23%  Similarity=0.444  Sum_probs=48.9

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-------------CCce-ee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-------------SGEK-SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-------------~~~~-~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|.+.+.+.+.+.|++...  .+.             .... ..   ....|.|.+++..|+|.|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   89 (242)
T 2znx_A           10 TLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (242)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHHCEEEEEe
Confidence            5688899999999999888888999998532  110             0011 11   123699999999999999999


Q ss_pred             eecCC
Q psy7616          80 ATNGV   84 (147)
Q Consensus        80 ~~~~~   84 (147)
                      +.+..
T Consensus        90 ~~n~~   94 (242)
T 2znx_A           90 QSNSX   94 (242)
T ss_dssp             ECSSS
T ss_pred             EecCC
Confidence            98753

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.51  E-value=3.7e-14  Score=95.71  Aligned_cols=64  Identities=20%  Similarity=0.342  Sum_probs=48.2

Q ss_pred             eeCCeEEEEEeecC-CCCC-ceEEEecCCCCCCC-ce-----------eeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          23 RKGGTITLECKASG-NPVP-SIIWSKKDSSLPSG-EK-----------SLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        23 ~~g~~~~l~C~~~~-~~~~-~v~w~~~~~~~~~~-~~-----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      ..|+.+.|.|.+.+ .|.+ .+.|++++..+... ..           ......|.|.++...|+|.|.|.+.+..+.
T Consensus       129 ~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  206 (438)
T 1qgc_4          129 LTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  206 (438)
T ss_dssp             HHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCS
T ss_pred             ccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccC
Confidence            35789999999876 5666 89999998766443 10           112346889999999999999999986554

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.51  E-value=7.6e-14  Score=77.02  Aligned_cols=87  Identities=24%  Similarity=0.528  Sum_probs=68.8

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--e---eccceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--L---EGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~---~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+......  .   ....|.|.++...|+|.|.|.+.
T Consensus        13 ~~~~i~~~p~--~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           13 LAARILTKPR--SMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             CCCEEEECCC--CEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred             CCCEEEECCC--CEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence            4566766665  668999999999999999899999999998877543221  1   24579999999999999999999


Q ss_pred             cCCCCceEEeEEEEE
Q psy7616          82 NGVGDPVTVDMTLEV   96 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v   96 (147)
                      |..|.. +..+.|.|
T Consensus        91 N~~G~~-~~~~~l~V  104 (106)
T 1nct_A           91 NSEGKQ-EAEFTLTI  104 (106)
T ss_dssp             CSSCBC-CEEEEEEE
T ss_pred             eCCCeE-EEEEEEEE
Confidence            988774 56666654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.50  E-value=4.3e-13  Score=84.93  Aligned_cols=75  Identities=13%  Similarity=0.324  Sum_probs=44.7

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCCC-------------------Cce-----eeeccc
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLPS-------------------GEK-----SLEGFS   62 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~~-------------------~~~-----~~~~~~   62 (147)
                      |.+...+.  .+.+..|+.++|.|.+.+.+.+.+.|++..  .....                   ...     ......
T Consensus         3 ~~v~~~p~--~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   80 (259)
T 3omz_A            3 SNLEGRTK--SVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLR   80 (259)
T ss_dssp             ----------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCE
T ss_pred             cccccCCc--eeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEE
Confidence            44444444  568899999999999988788899999832  11100                   000     012235


Q ss_pred             eEEEeecCCCCeEEEEEeecCCC
Q psy7616          63 ITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        63 l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      |.|.+++..|+|.|.|.+.+..+
T Consensus        81 L~I~~v~~~DsG~Y~C~~~~~~~  103 (259)
T 3omz_A           81 MILRNLIENDSGVYYCATWDQNY  103 (259)
T ss_dssp             EEESSCCGGGCEEEEEEEECTTS
T ss_pred             EEECCCCcccCEEEEEEEeeCCc
Confidence            99999999999999999987643

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.50  E-value=2.1e-13  Score=85.98  Aligned_cols=66  Identities=23%  Similarity=0.445  Sum_probs=48.2

Q ss_pred             ceEEeeCCeEEEEEeecCCC-----CCceEEEecCC--CC--------------CCCceee---eccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNP-----VPSIIWSKKDS--SL--------------PSGEKSL---EGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-----~~~v~w~~~~~--~~--------------~~~~~~~---~~~~l~~~~~~~~~~g   74 (147)
                      .+.+..|++++|.|.+.+.+     .+.+.|++++.  ..              .......   ....|.|.+++..|+|
T Consensus        43 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G  122 (252)
T 3bkj_L           43 SLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLRISRVEAEDLG  122 (252)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEEECCCCcccCE
Confidence            56789999999999998876     57899998642  11              0011111   1227999999999999


Q ss_pred             EEEEEeecCC
Q psy7616          75 VYQCTATNGV   84 (147)
Q Consensus        75 ~y~C~~~~~~   84 (147)
                      .|.|.+.+..
T Consensus       123 ~Y~C~~~~~~  132 (252)
T 3bkj_L          123 VYYCFQASLV  132 (252)
T ss_dssp             EEEEEECSBS
T ss_pred             EEEEEEEcCC
Confidence            9999998753

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.50  E-value=4.4e-13  Score=84.86  Aligned_cols=67  Identities=25%  Similarity=0.413  Sum_probs=48.0

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCC-------------------CCCceee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSL-------------------PSGEKSL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~-------------------~~~~~~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|.+.+.+  .+.+.|++..  ..+                   .......     ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (256)
T 1nqb_A            9 AELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTS   88 (256)
T ss_dssp             CEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECcCCh
Confidence            45788999999999988764  5789999843  111                   0011111     123699999999


Q ss_pred             CCCeEEEEEeecCCC
Q psy7616          71 HQAGVYQCTATNGVG   85 (147)
Q Consensus        71 ~~~g~y~C~~~~~~~   85 (147)
                      .|+|.|.|.+.+..+
T Consensus        89 ~DsG~Y~C~~~n~~g  103 (256)
T 1nqb_A           89 EDSAVYYCARYDYYG  103 (256)
T ss_dssp             GGCEEEEEEECCTTS
T ss_pred             hhCEEEEEEEeeccC
Confidence            999999999988643

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.50  E-value=8.5e-13  Score=74.43  Aligned_cols=87  Identities=18%  Similarity=0.254  Sum_probs=65.1

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCCCCCC------Cc-e------eeeccceEEEeecCCCCeEEEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDSSLPS------GE-K------SLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~~~~~------~~-~------~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+.+..|+.+.|.|.+.+.  +.+.+.|++++..+..      .. .      ......|.|.+++..|+|.|.|.+.|.
T Consensus        17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~   96 (122)
T 3s35_X           17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG   96 (122)
T ss_dssp             CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccC
Confidence            4578899999999999874  4567999998875421      00 0      123457999999999999999999998


Q ss_pred             CCCceEEeEEEEEeeeecCCCCc
Q psy7616          84 VGDPVTVDMTLEVLCKILPSGEK  106 (147)
Q Consensus        84 ~~~~~~~~~~l~v~~~~~~~~~~  106 (147)
                      .+.. ...+.|.|..+|.+...+
T Consensus        97 ~g~~-~~~~~l~V~~~p~i~~~p  118 (122)
T 3s35_X           97 LMTK-KNSTFVRVHEKPFVAFGS  118 (122)
T ss_dssp             SCEE-EEEEEEEEEEEECC----
T ss_pred             CCce-EEEEEEEEeccCeEEeec
Confidence            8775 678888898888876543

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.50  E-value=1.9e-12  Score=80.96  Aligned_cols=66  Identities=21%  Similarity=0.409  Sum_probs=48.3

Q ss_pred             ceEEeeCCeEEEEEeecCCC----CCceEEEecC--CCCC-------------CCce-ee---eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNP----VPSIIWSKKD--SSLP-------------SGEK-SL---EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~~--~~~~-------------~~~~-~~---~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|+.+.|.|.+.+.+    .+.+.|++..  ..+.             .... ..   ....|.|.+++..|+|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   89 (240)
T 1moe_A           10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT   89 (240)
T ss_dssp             EEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCCChhhCEE
Confidence            56788999999999998877    6789999863  2110             0011 11   12269999999999999


Q ss_pred             EEEEeecCC
Q psy7616          76 YQCTATNGV   84 (147)
Q Consensus        76 y~C~~~~~~   84 (147)
                      |.|.+.+..
T Consensus        90 Y~C~~~n~~   98 (240)
T 1moe_A           90 YYCQQTNED   98 (240)
T ss_dssp             EEEEECSSS
T ss_pred             EEEEEccCC
Confidence            999998864

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.49  E-value=2.1e-13  Score=88.15  Aligned_cols=68  Identities=22%  Similarity=0.397  Sum_probs=52.3

Q ss_pred             ceEEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCCcee---e--eccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKS---L--EGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~~---~--~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      .+.+.+|+.+.+.|... +.|.+.+.|++++..+......   .  ....|.|.+++..|+|.|.|.+.+..+.
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~   83 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGI   83 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCC
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCc
Confidence            45677899988888764 4678899999999877533221   1  1247999999999999999999986654

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.49  E-value=1.5e-13  Score=74.30  Aligned_cols=85  Identities=20%  Similarity=0.422  Sum_probs=64.8

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-eeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      ||.+...+.  ...+..|+.+.|.|.+.+.+ +.+.|++++..+.... .......|.|.+++..|+|.|.|.+.|..+.
T Consensus         9 pp~~~~~~~--~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~   85 (95)
T 2ckn_A            9 PWGVPVEVE--SLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSGS   85 (95)
T ss_dssp             SCCBTTBBC--CEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEECSSEEEESSCCGGGSEEEEEEEEETTEE
T ss_pred             CCEEEcCcc--eEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEeCCEEEECCCChHHCEEEEEEeccCCCc
Confidence            455544444  56889999999999998876 7999999988775432 2334668999999999999999999998766


Q ss_pred             ceEEeEEEEE
Q psy7616          87 PVTVDMTLEV   96 (147)
Q Consensus        87 ~~~~~~~l~v   96 (147)
                      . ...+.+.|
T Consensus        86 ~-~~~~~l~V   94 (95)
T 2ckn_A           86 D-TTYFSVNV   94 (95)
T ss_dssp             E-EEEEEEEE
T ss_pred             E-EEEEEEEE
Confidence            3 55555543

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.49  E-value=3.2e-13  Score=76.39  Aligned_cols=86  Identities=24%  Similarity=0.291  Sum_probs=64.4

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCC---CCCceEEEecCCCCC------CCcee---------eeccceEEEeecC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGN---PVPSIIWSKKDSSLP------SGEKS---------LEGFSITLEKVDR   70 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~v~w~~~~~~~~------~~~~~---------~~~~~l~~~~~~~   70 (147)
                      |.|...|.  ...+..|++++|.|.+.+.   |.|.|.|+|+. .+.      .....         .....|.|.+++.
T Consensus         8 ~~F~~~P~--~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk-~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   84 (126)
T 2dav_A            8 ILFIEKPQ--GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGK-WMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKD   84 (126)
T ss_dssp             CSCCSCCC--CCEEETTCCEEEEEEEECCCSSSCCEEEEEESS-SCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCT
T ss_pred             cEEEEcCC--CeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCc-CcccCCCCCceEEEccccccccccceEEEEEccCCc
Confidence            34555554  5689999999999998764   78999999974 111      11111         0246799999999


Q ss_pred             CCCeEEEEEeecCCCCceEEeEEEEEee
Q psy7616          71 HQAGVYQCTATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        71 ~~~g~y~C~~~~~~~~~~~~~~~l~v~~   98 (147)
                      .|+|.|+|.+.+..+.. +..+.|.|..
T Consensus        85 ~DaG~Y~Cevsn~~g~~-~~~~~L~V~~  111 (126)
T 2dav_A           85 NFAGNYRCEVTYKDKFD-SCSFDLEVHE  111 (126)
T ss_dssp             TSCEEEEEEEECSSCEE-EECCEEEEEC
T ss_pred             ccCEEEEEEEEeCCCcE-EEEEEEEEEe
Confidence            99999999999987664 7888888887

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.49  E-value=4.9e-14  Score=86.87  Aligned_cols=67  Identities=12%  Similarity=0.297  Sum_probs=48.5

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEecC--CCCC------------------CCce---eeeccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKKD--SSLP------------------SGEK---SLEGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~--~~~~------------------~~~~---~~~~~~l~~~~~~~~~~g   74 (147)
                      .+.+..|+.+.|.|.+.+. +.+.+.|++..  ....                  ....   ......|.|.+++..|+|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   88 (218)
T 3s96_B            9 SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPEDEA   88 (218)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEccCCcccCE
Confidence            5578899999999999887 78899999832  1100                  0000   011335999999999999


Q ss_pred             EEEEEeecCCC
Q psy7616          75 VYQCTATNGVG   85 (147)
Q Consensus        75 ~y~C~~~~~~~   85 (147)
                      .|.|.+.+..+
T Consensus        89 ~Y~C~~~~~~~   99 (218)
T 3s96_B           89 IYICGVGDTIK   99 (218)
T ss_dssp             EEEEEEEEEET
T ss_pred             EEEEEEecCCC
Confidence            99999977543

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.6e-13  Score=74.95  Aligned_cols=87  Identities=17%  Similarity=0.244  Sum_probs=65.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eee---ccceEEEeecCCCCeEEEEEeec
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLE---GFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~---~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +|.|...+.  ...+..|+.+.|.|.+  .|.+.+.|++++..+.....  ...   ...|.|.++...|+|.|.|.+.|
T Consensus         7 p~~~~~~~~--~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A            7 GLKILTPLT--DQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             CCCCSBCCC--CEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             CCEEeccCC--ceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence            455555554  6689999999999999  58889999999988754332  111   23699999999999999999998


Q ss_pred             CCCCceEEeEEEEEeeeec
Q psy7616          83 GVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~~  101 (147)
                      .  . .+..+.|.|..+|.
T Consensus        83 ~--~-~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           83 Y--N-VTLPAKVHVISGPS   98 (100)
T ss_dssp             S--C-CCEEEEEEEECCSC
T ss_pred             C--C-eeEEEEEEEeCCCC
Confidence            7  2 25666777776653

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.48  E-value=8e-13  Score=83.64  Aligned_cols=65  Identities=20%  Similarity=0.315  Sum_probs=47.4

Q ss_pred             eEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC-----------------CCce-ee-----eccceEEEeecCCC
Q psy7616          20 LTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP-----------------SGEK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~-----------------~~~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      ..+..|+.++|.|.+.+.+  .+.+.|++..  ..+.                 ..+. ..     ....|.|.+++..|
T Consensus        10 ~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~D   89 (257)
T 1f3r_B           10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (257)
T ss_dssp             SEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESCCTTC
T ss_pred             ccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCCCccc
Confidence            3788999999999998764  6789999862  2110                 0111 11     12379999999999


Q ss_pred             CeEEEEEeecCC
Q psy7616          73 AGVYQCTATNGV   84 (147)
Q Consensus        73 ~g~y~C~~~~~~   84 (147)
                      +|.|.|.+.+..
T Consensus        90 sG~Y~C~a~n~~  101 (257)
T 1f3r_B           90 TGTYYCTRDLYG  101 (257)
T ss_dssp             CEEEEEEEESSS
T ss_pred             CEEEEEEEcccc
Confidence            999999998863

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.48  E-value=7.6e-13  Score=81.54  Aligned_cols=67  Identities=13%  Similarity=0.271  Sum_probs=47.0

Q ss_pred             ceEEeeCCeEEEEEee-cCCC-CCceEEEecCC--CC--------------CCCceee---eccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKA-SGNP-VPSIIWSKKDS--SL--------------PSGEKSL---EGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~-~~~~-~~~v~w~~~~~--~~--------------~~~~~~~---~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|+.+.|.|.+ .+.+ .+.+.|++++.  .+              .......   ....|.|.+++..|+|.|.
T Consensus         9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   88 (216)
T 2xzc_L            9 SVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY   88 (216)
T ss_dssp             EEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             cEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEEEE
Confidence            5688899999999994 4432 57899998542  11              0011111   1236999999999999999


Q ss_pred             EEeecCCC
Q psy7616          78 CTATNGVG   85 (147)
Q Consensus        78 C~~~~~~~   85 (147)
                      |.+.+..+
T Consensus        89 C~~~~~~~   96 (216)
T 2xzc_L           89 CGTWDSSL   96 (216)
T ss_dssp             EEEECTTS
T ss_pred             EEEEeCCC
Confidence            99988654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.47  E-value=1.4e-12  Score=81.90  Aligned_cols=66  Identities=20%  Similarity=0.428  Sum_probs=47.9

Q ss_pred             ceEEeeCCeEEEEEeecCCC-----CCceEEEecCC--CC--------------CCCceee---eccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNP-----VPSIIWSKKDS--SL--------------PSGEKSL---EGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-----~~~v~w~~~~~--~~--------------~~~~~~~---~~~~l~~~~~~~~~~g   74 (147)
                      .+.+..|+.++|.|.+.+.+     .+.+.|++...  .+              .......   ....|.|.+++..|+|
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   89 (247)
T 1svz_A           10 YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG   89 (247)
T ss_dssp             EEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECCCCHHHCE
Confidence            56888999999999998776     57899998531  11              0011111   1236999999999999


Q ss_pred             EEEEEeecCC
Q psy7616          75 VYQCTATNGV   84 (147)
Q Consensus        75 ~y~C~~~~~~   84 (147)
                      .|.|.+.+..
T Consensus        90 ~Y~C~~~n~~   99 (247)
T 1svz_A           90 IYYCFQGSHF   99 (247)
T ss_dssp             EEEEEECSSS
T ss_pred             EEEEEEccCC
Confidence            9999998753

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.47  E-value=2e-13  Score=73.21  Aligned_cols=62  Identities=16%  Similarity=0.324  Sum_probs=49.0

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--e-e--ccceEEEeecCCCCeEEEEEeecC
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--L-E--GFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~-~--~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+..|+.+.|.|.+.+ |.+.+.|++++..+......  . .  ...|.|.++...|+|.|.|.+.|.
T Consensus        17 ~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   83 (91)
T 2lvc_A           17 HAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGDE   83 (91)
T ss_dssp             ECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSSC
T ss_pred             EEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcce
Confidence            4457999999999865 78889999999988654331  1 1  236999999999999999998663

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.47  E-value=1.1e-12  Score=84.08  Aligned_cols=65  Identities=15%  Similarity=0.329  Sum_probs=46.0

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCC--CCC-------C------------Cceee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDS--SLP-------S------------GEKSL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~--~~~-------~------------~~~~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|++++|.|...+.  +.+.+.|++...  ...       .            .....     ....|.|.++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (280)
T 3fku_X            9 AEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMDLRSLRS   88 (280)
T ss_dssp             CCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEEECSCCS
T ss_pred             CEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence            5588999999999998764  456799997431  110       0            00011     113699999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus        89 ~DsG~Y~C~~~~~  101 (280)
T 3fku_X           89 EDTAVYYCARSPS  101 (280)
T ss_dssp             TTCEECCEEECSS
T ss_pred             hhCEEEEEEEecC
Confidence            9999999999875

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.46  E-value=6.8e-13  Score=89.57  Aligned_cols=119  Identities=21%  Similarity=0.336  Sum_probs=77.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCC----CceEEEecC--CCC--------------CCCceee---eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPV----PSIIWSKKD--SSL--------------PSGEKSL---EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~----~~v~w~~~~--~~~--------------~~~~~~~---~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|+.+.|.|.+.+.+.    +.+.|+++.  ..+              .......   ....|.|.+++..|+|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   89 (438)
T 1qgc_4           10 SLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSRTDFTLTIDPVEADDVAT   89 (438)
T ss_dssp             EEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccCCcEEEEeCCCcCcCCee
Confidence            567889999999999887665    379999963  211              1111111   12369999999999999


Q ss_pred             EEEEeecCCCCceEEeEEEEEee--------------------------------e-e-cCCCCcc----ccC-------
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLC--------------------------------K-I-LPSGEKS----LEG-------  110 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~--------------------------------~-~-~~~~~~~----~~~-------  110 (147)
                      |.|.+.+..+......+.+.+..                                + | .+.|.++    ..+       
T Consensus        90 Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~  169 (438)
T 1qgc_4           90 YYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTD  169 (438)
T ss_dssp             EEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEEC
T ss_pred             EEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceecccc
Confidence            99999886542111111122110                                1 1 2445443    111       


Q ss_pred             -----------CceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         111 -----------FSITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       111 -----------~~~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                                 ..|.+.+++.+|+|.|+|.|.|..|..
T Consensus       170 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  207 (438)
T 1qgc_4          170 QDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  207 (438)
T ss_dssp             CCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             ccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC
Confidence                       146778889999999999999998864

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.46  E-value=7.3e-14  Score=85.83  Aligned_cols=64  Identities=16%  Similarity=0.367  Sum_probs=47.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC--------------CCCceee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL--------------PSGEKSL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~--------------~~~~~~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++..  ..+              .......   ....|.|.+++..|+|.|.|.
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   87 (212)
T 1nfd_E            8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL   87 (212)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred             eEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEEEE
Confidence            568889999999999877777789999853  221              1111111   223799999999999999999


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      +.+
T Consensus        88 ~~n   90 (212)
T 1nfd_E           88 SSY   90 (212)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            985

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.46  E-value=3.6e-13  Score=71.18  Aligned_cols=73  Identities=22%  Similarity=0.359  Sum_probs=55.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee-----eccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL-----EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      .+.+..|+.+.|.|.+.+ |.+.+.|++++..+.......     ....|.|.++...|+|.|.|.+.+.     +..+.
T Consensus         5 ~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~-----~~~a~   78 (84)
T 2lu7_A            5 RVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDAPQD-----SRIFL   78 (84)
T ss_dssp             CEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEECTTT-----CEEEE
T ss_pred             EEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEECCE-----EEEEE
Confidence            567889999999999865 888999999998886543321     2236999999999999999998553     34445


Q ss_pred             EEEe
Q psy7616          94 LEVL   97 (147)
Q Consensus        94 l~v~   97 (147)
                      |.|.
T Consensus        79 l~V~   82 (84)
T 2lu7_A           79 VSVE   82 (84)
T ss_dssp             EEEC
T ss_pred             EEEE
Confidence            5554

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=4.1e-13  Score=72.66  Aligned_cols=83  Identities=27%  Similarity=0.541  Sum_probs=64.0

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      +|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+...    ....|.|.++...|+|.|.|.+.|..+..
T Consensus        10 ~~~i~~~p~--~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~   83 (96)
T 2ens_A           10 EVQLVVEPE--GGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLP----PSPVLILPEIGPQDQGTYSCVATHSSHGP   83 (96)
T ss_dssp             SCCCEEEST--TSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSC----CCSEEEEESCCTTTCEEEECEECCSSCCC
T ss_pred             CCEEEECCC--CCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCC----CCCEEEECCCCcccCEEEEEEEEeCCCCc
Confidence            566666665  347899999999999999888999999998776532    34679999999999999999999964432


Q ss_pred             -eEEeEEEEE
Q psy7616          88 -VTVDMTLEV   96 (147)
Q Consensus        88 -~~~~~~l~v   96 (147)
                       .+..+.+.|
T Consensus        84 ~~s~~~~v~V   93 (96)
T 2ens_A           84 QESRAVSISI   93 (96)
T ss_dssp             EECCCEEEEE
T ss_pred             EEEEEEEEEE
Confidence             234444544

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.46  E-value=2.8e-13  Score=76.55  Aligned_cols=77  Identities=17%  Similarity=0.246  Sum_probs=61.4

Q ss_pred             eCCeEEEEEeecCCCCCceEEEecCCCCCCCcee------------eeccceEEEeecCCCCeEEEEEeecCCCCceEEe
Q psy7616          24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS------------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD   91 (147)
Q Consensus        24 ~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   91 (147)
                      .+..+.|.|.+.|.|.|.+.|++++..+......            .....|.|.++...|+|.|+|.+.|..|.. ...
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~t   92 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-SAS   92 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEE-EEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeE-EEE
Confidence            5678899999999999999999999888643221            123579999999999999999999998874 666


Q ss_pred             EEEEEeeeec
Q psy7616          92 MTLEVLCKIL  101 (147)
Q Consensus        92 ~~l~v~~~~~  101 (147)
                      +.+.+...|.
T Consensus        93 ~~l~v~~~P~  102 (126)
T 1he7_A           93 IMAAFMDNPF  102 (126)
T ss_dssp             EEECCCSCTT
T ss_pred             EEEEEEcCCC
Confidence            6676665553

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.45  E-value=1.6e-13  Score=74.80  Aligned_cols=88  Identities=24%  Similarity=0.479  Sum_probs=65.5

Q ss_pred             CCceEEcCC--CCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce------eeeccceEEEeecCCCCeEEEEE
Q psy7616           8 PPSIRTSPS--NGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         8 ~p~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      ||.+...+.  ...+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....      ......|.|.++...|+|.|.|.
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~   83 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCV   83 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEE
Confidence            566654432  2346788999999999998889999999999877653221      11334799999999999999999


Q ss_pred             eecCCCCceEEeEEEEE
Q psy7616          80 ATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v   96 (147)
                      +.|..|.. ...+.+.|
T Consensus        84 a~N~~g~~-~~~~~l~V   99 (100)
T 3caf_A           84 VENEYGSI-NHTYHLDV   99 (100)
T ss_dssp             EEETTEEE-EEEEEEEE
T ss_pred             EEeCCCEE-EEEEEEEE
Confidence            99987764 55555544

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.45  E-value=1.4e-12  Score=72.10  Aligned_cols=87  Identities=20%  Similarity=0.297  Sum_probs=63.2

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCC---CceEEEecCCCCCC----Cc-ee---------eeccceEEEeecC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPV---PSIIWSKKDSSLPS----GE-KS---------LEGFSITLEKVDR   70 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~v~w~~~~~~~~~----~~-~~---------~~~~~l~~~~~~~   70 (147)
                      .|.|...|.  .+.+..|+.++|.|.+.+.|.   +.+.|++++.....    .. ..         .....|.|.+++.
T Consensus         4 ~p~f~~~p~--~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   81 (108)
T 3cx2_A            4 IGLFVMRPQ--DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQP   81 (108)
T ss_dssp             CCSCSBCCC--CEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCG
T ss_pred             ccEEEeCCC--cEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCC
Confidence            455655554  668999999999999998887   89999997621100    00 00         1245799999999


Q ss_pred             CCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          71 HQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        71 ~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      .|+|.|.|.+.|..|.. +..+.|.|.
T Consensus        82 ~D~G~Y~C~a~N~~G~~-~~~~~L~V~  107 (108)
T 3cx2_A           82 AFTGSYRCEVSTKDKFD-CSNFNLTVH  107 (108)
T ss_dssp             GGCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             ccCEEEEEEEecCCCce-EEEEEEEEe
Confidence            99999999999988764 666666653

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.45  E-value=6.3e-13  Score=92.84  Aligned_cols=80  Identities=24%  Similarity=0.435  Sum_probs=59.4

Q ss_pred             ceEEeeCCeEEEEEee-cCCCCCceEEEecCCCCC--------------CCceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616          19 QLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLP--------------SGEKSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~--------------~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      ...+..|+.++|.|.. .+.+.+.+.|++++..+.              ..........|.|.+++..|+|.|.|.+.+.
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~  454 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNR  454 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTSCEEESSCCGGGCEEEEEEEECT
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCceEEEeccccccCeEEEEEEEcC
Confidence            4577899999999998 677888999999876321              1112233457999999999999999999987


Q ss_pred             CCCceEEeEEEEEee
Q psy7616          84 VGDPVTVDMTLEVLC   98 (147)
Q Consensus        84 ~~~~~~~~~~l~v~~   98 (147)
                      .+......+.|.|..
T Consensus       455 ~~~~~~~~~~l~V~~  469 (581)
T 3o3u_N          455 NGKETKSNYRVRVYQ  469 (581)
T ss_dssp             TSCEEEEEEEEEEEB
T ss_pred             CCceeEEEEEEEEEc
Confidence            766434555566543

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.45  E-value=6.3e-13  Score=73.23  Aligned_cols=91  Identities=25%  Similarity=0.342  Sum_probs=64.6

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCC-C--------CCCceee-----eccceEEEeecCC
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSS-L--------PSGEKSL-----EGFSITLEKVDRH   71 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~-~--------~~~~~~~-----~~~~l~~~~~~~~   71 (147)
                      ..+|.+...+.  .+.+..|+.+.|.|.+.+.+.+.+.|++++.. +        .......     ....|.|.+++..
T Consensus         4 ~~~p~~~~~~~--~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~   81 (108)
T 3m45_A            4 KGSQGQFPLTQ--NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLS   81 (108)
T ss_dssp             ----CCCEECC--CEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGG
T ss_pred             ccCCCccccCC--eeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChh
Confidence            34566666665  56899999999999999888889999987651 1        0111111     3457999999999


Q ss_pred             CCeEEEEEeecCCCCceEEeEEEEEeeee
Q psy7616          72 QAGVYQCTATNGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        72 ~~g~y~C~~~~~~~~~~~~~~~l~v~~~~  100 (147)
                      |+|.|.|.+.+ .+. .+..+.|.|..+|
T Consensus        82 D~G~Y~C~~~n-~~~-~~~~~~L~V~~~P  108 (108)
T 3m45_A           82 DEGQYTCSLFT-MPV-KTSKAYLTVLGVP  108 (108)
T ss_dssp             GCEEEEEEECS-SSC-EEEEEEEEEECCC
T ss_pred             HCeEEEEEEEc-CCC-cEEEEEEEEEcCC
Confidence            99999999998 554 3667777776544

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.45  E-value=6.2e-13  Score=86.24  Aligned_cols=93  Identities=25%  Similarity=0.378  Sum_probs=73.1

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      +.++|.+...+.. ...+..|+.+.|.|.+.+.|.| .+.|++++..++... ...+..|.|.+++..|+|.|.|.+.|.
T Consensus       213 V~~~P~v~~~~~~-~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~  290 (313)
T 4fqp_A          213 VYYPPEVSISGYD-NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA-VAQGAQLLIRPVDKPINTTLICNVTNA  290 (313)
T ss_dssp             BCEEEEEEEECCC-SCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE-EEETTEEEECCCSSCCEEEEEEEEECS
T ss_pred             cccCCcccccccc-ceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce-EEeCCEEEECcCChhhCEEEEEEEEeC
Confidence            4467777665544 3356778999999999998888 599999998886543 345568999999999999999999999


Q ss_pred             CCCceEEeEEEEEeeee
Q psy7616          84 VGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        84 ~~~~~~~~~~l~v~~~~  100 (147)
                      .|.. +..+.|.|..+|
T Consensus       291 ~G~~-~~~~~l~V~~~P  306 (313)
T 4fqp_A          291 LGAR-QAELTVQVKEGP  306 (313)
T ss_dssp             SCEE-EEEEEEEEECCC
T ss_pred             CCcE-EEEEEEEEEeCC
Confidence            8875 777778776444

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.44  E-value=2.4e-12  Score=70.49  Aligned_cols=83  Identities=19%  Similarity=0.247  Sum_probs=62.1

Q ss_pred             eEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeee---ccceEEEeecCCCCeEEEEEeecC
Q psy7616          11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLE---GFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~---~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      +...+.  .+.+..|+.+.|.|.+.+ +.+.+.|++++..+....    ....   ...|.|.++...|+|.|.|.+.| 
T Consensus        10 ~~~~~~--~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n-   85 (103)
T 1x44_A           10 VTKQLE--DTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG-   85 (103)
T ss_dssp             CSBCCC--CEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT-
T ss_pred             eeccCC--CEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC-
Confidence            444444  568899999999999977 778999999998775433    1111   24799999999999999999977 


Q ss_pred             CCCceEEeEEEEEeeeec
Q psy7616          84 VGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        84 ~~~~~~~~~~l~v~~~~~  101 (147)
                          ....+.|.|..+|.
T Consensus        86 ----~~~~~~l~V~~~p~   99 (103)
T 1x44_A           86 ----GQSSAKLSVDLKSG   99 (103)
T ss_dssp             ----EEEEEEEEEECCCS
T ss_pred             ----CcEEEEEEEeCCCC
Confidence                25566667666554

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.44  E-value=2.3e-12  Score=69.34  Aligned_cols=73  Identities=19%  Similarity=0.194  Sum_probs=56.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--ee---ccceEEEeecCCCCeEEEEEeec
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--LE---GFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~~---~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +|.|...+.  ...+..|+.+.|.|.+.+ +.+.+.|++++..+......  ..   ...|.|.++...|+|.|.|.+.|
T Consensus         5 ~~~~~~~~~--~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            5 LIEVEKPLY--GVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCEEECCC--CEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CcEeeccCc--ceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            456666555  568999999999999876 55789999999887543321  11   23699999999999999999977


Q ss_pred             C
Q psy7616          83 G   83 (147)
Q Consensus        83 ~   83 (147)
                      .
T Consensus        82 ~   82 (93)
T 1waa_A           82 T   82 (93)
T ss_dssp             E
T ss_pred             C
Confidence            3

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.44  E-value=2.3e-13  Score=76.28  Aligned_cols=94  Identities=37%  Similarity=0.608  Sum_probs=67.1

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-------eeeeccceEEE-----eecCCC
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-------KSLEGFSITLE-----KVDRHQ   72 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-------~~~~~~~l~~~-----~~~~~~   72 (147)
                      +..||.+...+.  ...+..|+.+.|.|.+.+.|.|.+.|++++..+....       .....+.+.+.     +++..|
T Consensus         6 ~~~pP~i~~~p~--~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D   83 (117)
T 2v9t_A            6 EDFPPRIVEHPS--DLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPD   83 (117)
T ss_dssp             CCEEEEEEECCC--CEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSS
T ss_pred             ccCCCeeEcCCC--CEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCc
Confidence            346888887765  5688999999999999999999999999987764321       11122333333     447899


Q ss_pred             CeEEEEEeecCCCCceEEeEEEEEeeee
Q psy7616          73 AGVYQCTATNGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        73 ~g~y~C~~~~~~~~~~~~~~~l~v~~~~  100 (147)
                      +|.|.|.+.|..|......+.+.+..+.
T Consensus        84 ~G~Y~C~a~N~~G~~~s~~~~l~~~~~~  111 (117)
T 2v9t_A           84 EGVYVCVARNYLGEAVSHDASLEVAAAA  111 (117)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEC---
T ss_pred             CEEEEEEEEeCccceEeeeEEEEhhhhh
Confidence            9999999999988765556666665443

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.44  E-value=3.5e-13  Score=83.92  Aligned_cols=67  Identities=13%  Similarity=0.305  Sum_probs=47.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCC-C-ceEEEecCC--CC----------C---CCce-ee---eccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPV-P-SIIWSKKDS--SL----------P---SGEK-SL---EGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~-~-~v~w~~~~~--~~----------~---~~~~-~~---~~~~l~~~~~~~~~~g~y~   77 (147)
                      ...+..|+.+.|.|.+.+.+. + .+.|+++..  .+          .   .... ..   ....|.|.+++..|+|.|.
T Consensus        28 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~  107 (234)
T 2j6e_L           28 SASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLRSEDEADYY  107 (234)
T ss_dssp             CCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCCSTTCSEEE
T ss_pred             cEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCCHHHCEEEE
Confidence            457889999999999877543 4 699998632  11          0   0111 11   2237999999999999999


Q ss_pred             EEeecCCC
Q psy7616          78 CTATNGVG   85 (147)
Q Consensus        78 C~~~~~~~   85 (147)
                      |.+.+..+
T Consensus       108 C~~~~~~~  115 (234)
T 2j6e_L          108 CATWDDSL  115 (234)
T ss_dssp             EEEEETTT
T ss_pred             EEEEcCCc
Confidence            99987654

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.44  E-value=8.9e-12  Score=79.23  Aligned_cols=74  Identities=23%  Similarity=0.420  Sum_probs=51.7

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCC------CCceEEEecC--CCCC-------------CCce-ee---eccce
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNP------VPSIIWSKKD--SSLP-------------SGEK-SL---EGFSI   63 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~------~~~v~w~~~~--~~~~-------------~~~~-~~---~~~~l   63 (147)
                      +.+...|.  .+.+..|+.++|.|.+.+.+      .+.+.|++..  ..+.             ..+. ..   ....|
T Consensus         6 ~~v~q~p~--~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L   83 (264)
T 2gjj_A            6 IVLTQTPS--SLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTL   83 (264)
T ss_dssp             CCEEEECS--EEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEE
T ss_pred             cceEecCC--eEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEE
Confidence            34444444  56889999999999988766      5789999853  2110             0111 11   12379


Q ss_pred             EEEeecCCCCeEEEEEeecCC
Q psy7616          64 TLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        64 ~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .|.++...|+|.|.|.+.+..
T Consensus        84 ~I~~v~~~DsG~Y~C~~~~~~  104 (264)
T 2gjj_A           84 TIGSVKAEDLAVYYCQQYSNY  104 (264)
T ss_dssp             EESSCCGGGCEEEEEEECSSS
T ss_pred             EECCCCHHHCEEEEEEEecCC
Confidence            999999999999999998753

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.44  E-value=1.6e-12  Score=82.05  Aligned_cols=65  Identities=12%  Similarity=0.294  Sum_probs=47.0

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCC--CCC-------------CCce-ee---eccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDS--SLP-------------SGEK-SL---EGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~--~~~-------------~~~~-~~---~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|+.++|.|.+.+.  +.+.+.|++...  ...             .... ..   ....|.|.+++..|+|.|.
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~   90 (256)
T 3ux9_B           11 SVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADYY   90 (256)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEEE
T ss_pred             cEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEEE
Confidence            4578899999999998776  677899998531  110             0011 11   1226999999999999999


Q ss_pred             EEeecC
Q psy7616          78 CTATNG   83 (147)
Q Consensus        78 C~~~~~   83 (147)
                      |.+.+.
T Consensus        91 C~~~~~   96 (256)
T 3ux9_B           91 CQVRDN   96 (256)
T ss_dssp             EEEEET
T ss_pred             EEEEEC
Confidence            999874

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.43  E-value=6.1e-14  Score=87.38  Aligned_cols=66  Identities=21%  Similarity=0.401  Sum_probs=36.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CC--------------CCCcee---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SL--------------PSGEKS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~--------------~~~~~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+++.|.|.+.+.+.+.+.|++...  ..              ......   .....|.|.+++..|+|.|.|.
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  111 (233)
T 3bqu_C           32 SLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLSEDVADYYCL  111 (233)
T ss_dssp             BC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----CCCCSEEEEE
T ss_pred             eEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCHHHCEEEEEE
Confidence            4578899999999998877677899998542  11              000001   1223689999999999999999


Q ss_pred             eecCC
Q psy7616          80 ATNGV   84 (147)
Q Consensus        80 ~~~~~   84 (147)
                      +.+..
T Consensus       112 ~~~~~  116 (233)
T 3bqu_C          112 QSDNL  116 (233)
T ss_dssp             ECSSS
T ss_pred             EecCC
Confidence            97643

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.43  E-value=9.6e-12  Score=79.75  Aligned_cols=67  Identities=24%  Similarity=0.447  Sum_probs=48.7

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCCC--CC------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDSS--LP------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~~--~~------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|++++|.|.+.+.+  .+.+.|++....  +.                  ..+. ..     ....|.|.+++.
T Consensus        35 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  114 (282)
T 1qok_A           35 AELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQLSSLTS  114 (282)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEEECcCCh
Confidence            56889999999999987764  578999996421  10                  0111 11     124699999999


Q ss_pred             CCCeEEEEEeecCCC
Q psy7616          71 HQAGVYQCTATNGVG   85 (147)
Q Consensus        71 ~~~g~y~C~~~~~~~   85 (147)
                      .|+|.|.|.+.+..+
T Consensus       115 ~DsG~Y~C~~~n~~g  129 (282)
T 1qok_A          115 EDTAVYYCNEGTPTG  129 (282)
T ss_dssp             GGCEEEEEEEECSSS
T ss_pred             hhCEEEEEEeccCCC
Confidence            999999999988643

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.43  E-value=3e-12  Score=69.31  Aligned_cols=78  Identities=21%  Similarity=0.376  Sum_probs=61.4

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEecCCCCCCCcee---eec--cceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKS---LEG--FSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~~---~~~--~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      ...+..|+.+.|.|.+.+. |.+.+.|++++..+......   ...  ..|.|.++...|+|.|.|.+.|..+.. ...+
T Consensus        10 ~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~   88 (97)
T 2bk8_A           10 HAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGED-SSYA   88 (97)
T ss_dssp             CEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEE
T ss_pred             CEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCeE-eEEE
Confidence            6688999999999999986 88999999998776543221   122  279999999999999999999988764 5555


Q ss_pred             EEEEe
Q psy7616          93 TLEVL   97 (147)
Q Consensus        93 ~l~v~   97 (147)
                      .|.|.
T Consensus        89 ~l~V~   93 (97)
T 2bk8_A           89 ELFVK   93 (97)
T ss_dssp             EEEET
T ss_pred             EEEEE
Confidence            55543

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.42  E-value=6.4e-12  Score=72.27  Aligned_cols=80  Identities=23%  Similarity=0.411  Sum_probs=63.0

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc------------ee------eeccceEEEe
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE------------KS------LEGFSITLEK   67 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~------------~~------~~~~~l~~~~   67 (147)
                      ..||.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+....            ..      .....|.|.+
T Consensus        19 ~~pP~~~~~p~--~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   96 (137)
T 3qr2_A           19 SHMAGFVQAPL--SQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDT   96 (137)
T ss_dssp             --CCEEEECCC--CEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECS
T ss_pred             CCCCeEEcCCC--CEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECC
Confidence            35888888776  5688999999999999999999999999876653210            00      1345799999


Q ss_pred             ecCCCCeEEEEEeecCCCCc
Q psy7616          68 VDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~~~~~   87 (147)
                      +...|+|.|.|.+.|..|..
T Consensus        97 v~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           97 LVEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             CCGGGCEEEEEEEECCTTSS
T ss_pred             CCcccCEEEEEEEEecCCcc
Confidence            99999999999999987764

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=3.9e-13  Score=75.19  Aligned_cols=87  Identities=18%  Similarity=0.219  Sum_probs=63.5

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCC---CCCceEEEecCC-CCCC----Cceee---------eccceEEEeecCC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGN---PVPSIIWSKKDS-SLPS----GEKSL---------EGFSITLEKVDRH   71 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~v~w~~~~~-~~~~----~~~~~---------~~~~l~~~~~~~~   71 (147)
                      +.|...|.  .+.+..|++++|.|.+.+.   |.|.|.|+++.- .+..    .....         ....|.|.++...
T Consensus        13 ~~f~~~P~--~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           13 GVFLKKPD--SVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             SSCSBCCC--CCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             ceEEECCC--CeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence            34455554  5689999999999998764   688999999741 1110    11110         2467999999999


Q ss_pred             CCeEEEEEeecCCCCceEEeEEEEEee
Q psy7616          72 QAGVYQCTATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        72 ~~g~y~C~~~~~~~~~~~~~~~l~v~~   98 (147)
                      |+|.|+|.+.+..+. .+..+.|.|..
T Consensus        91 D~G~Y~Cevsn~~g~-~s~~~~L~V~~  116 (118)
T 2edn_A           91 DRGYYRLEVKAKDTC-DSCGFNIDVEA  116 (118)
T ss_dssp             TCSCEEEEEECSSCE-EEEEECCEEEC
T ss_pred             hCEEEEEEEEEcCCc-EEEEEEEEEEc
Confidence            999999999998876 47777777664

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.42  E-value=1.3e-12  Score=80.70  Aligned_cols=66  Identities=20%  Similarity=0.402  Sum_probs=47.9

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC------------------CCc-eee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP------------------SGE-KSL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~------------------~~~-~~~-----~~~~l~~~~~~~   70 (147)
                      ...+..|+.+.|.|.+.+.+  .+.+.|+++.  ..+.                  ..+ ...     ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (219)
T 1c1e_H            9 PELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINNLKN   88 (219)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECSCCG
T ss_pred             CeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECCCCc
Confidence            45788999999999988754  5789999873  2210                  001 111     124799999999


Q ss_pred             CCCeEEEEEeecCC
Q psy7616          71 HQAGVYQCTATNGV   84 (147)
Q Consensus        71 ~~~g~y~C~~~~~~   84 (147)
                      .|+|.|.|.+.+..
T Consensus        89 ~D~G~Y~C~~~~~~  102 (219)
T 1c1e_H           89 EDMATYFCARGTTI  102 (219)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             ccCEEEEEEEeccC
Confidence            99999999998754

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=2.4e-12  Score=70.45  Aligned_cols=89  Identities=19%  Similarity=0.282  Sum_probs=66.7

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eee---ccceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLE---GFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~---~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .||.+...+.  ...+..|+.+.|.|.+.+ +.+.+.|++++..+.....  ...   ...|.|.++...|+|.|.|.+.
T Consensus         7 ~pp~~~~~~~--~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   83 (103)
T 2edf_A            7 GPAAIIKPLE--DQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVE   83 (103)
T ss_dssp             CCCCEEECCC--CEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECS
T ss_pred             CCcEEEecCC--ccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEc
Confidence            3566666555  568999999999999987 7788999999988754322  111   2259999999999999999998


Q ss_pred             cCCCCceEEeEEEEEeeeecCC
Q psy7616          82 NGVGDPVTVDMTLEVLCKILPS  103 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~  103 (147)
                      |.     ...+.|.|..+|..+
T Consensus        84 n~-----~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           84 AS-----KSTASLHVEEKASGP  100 (103)
T ss_dssp             SC-----EEEEEEEECCCSSSS
T ss_pred             cC-----CcEEEEEEeCCCCCC
Confidence            82     556667777666543

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.42  E-value=5.6e-13  Score=74.84  Aligned_cols=94  Identities=17%  Similarity=0.224  Sum_probs=67.4

Q ss_pred             eeeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--e-------eccceEEEeecCCC
Q psy7616           2 EQLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--L-------EGFSITLEKVDRHQ   72 (147)
Q Consensus         2 ~~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~-------~~~~l~~~~~~~~~   72 (147)
                      .+.+.+||.+......   .  ......+.|.+.|.|.+.+.|++++..+......  .       ....|.|.++...|
T Consensus         2 ~L~V~~pP~i~~~~~~---~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   76 (118)
T 1wwc_A            2 ALTVYYPPRVVSLEEP---E--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYN   76 (118)
T ss_dssp             --CCCCCCCCCCCCCC---C--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGG
T ss_pred             EEEEecCCceeccCCC---e--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhc
Confidence            3456678887554332   1  2266788999999999999999999877544321  1       34579999999999


Q ss_pred             CeEEEEEeecCCCCceEEeEEEEEeeeec
Q psy7616          73 AGVYQCTATNGVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        73 ~g~y~C~~~~~~~~~~~~~~~l~v~~~~~  101 (147)
                      +|.|.|.+.|..|.. ...+.+.+...|.
T Consensus        77 ~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~  104 (118)
T 1wwc_A           77 NGNYTLIAKNPLGTA-NQTINGHFLKEPF  104 (118)
T ss_dssp             CEEEEEEEEETTEEE-EEEEEECCSCCCC
T ss_pred             CEEEEEEEECCCCeE-eeEEEEEEccCCC
Confidence            999999999988774 6666666555543

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.42  E-value=5e-12  Score=77.64  Aligned_cols=113  Identities=18%  Similarity=0.227  Sum_probs=79.2

Q ss_pred             ceEEcCCCCceEEeeCCeEEEEEeecCCCCC--ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          10 SIRTSPSNGQLTVRKGGTITLECKASGNPVP--SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~--~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      .+.+.++...+.+..|+++.|.|.+ +.+.|  .|.|.+.+..+...........|.|.+++.+|.|.|.|.+.+..+. 
T Consensus         7 ~~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~-   84 (210)
T 1gsm_A            7 PLQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT-   84 (210)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE-
T ss_pred             CEEEeCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeecccccCcEEecCCccEEEECccCcccCceEEEEEEeCCCc-
Confidence            3444455434689999999999999 77777  8999997665532222234567999999999999999999987655 


Q ss_pred             eEEeEEEEEeeeecCCCCccccCCceEEeecCCCCCeEEEEEeecC
Q psy7616          88 VTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus        88 ~~~~~~l~v~~~~~~~~~~~~~~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ....+.|.|..+|.......        ..+...+.. .+|.|.+.
T Consensus        85 ~~~~~~ltV~~~P~~~~i~~--------~~~~~g~~~-l~C~a~g~  121 (210)
T 1gsm_A           85 FQHTVQLLVYAFPNQLTVSP--------AALVPGDPE-VACTAHKV  121 (210)
T ss_dssp             EEEEEEEEEEBCCSEEEEES--------SSBCTTCCE-EEEEEEEE
T ss_pred             eEEEEEEEEEecCCCcEEcc--------ceEEeCCce-EEEEeCCC
Confidence            36678888887776432211        123334555 88888753

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.41  E-value=2e-12  Score=71.47  Aligned_cols=88  Identities=22%  Similarity=0.430  Sum_probs=65.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC--CCCceEEEecCCCCCCCce-----e--------eeccceEEEeecCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN--PVPSIIWSKKDSSLPSGEK-----S--------LEGFSITLEKVDRH   71 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~~~~~~~~-----~--------~~~~~l~~~~~~~~   71 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.  +.+.+.|++++..+.....     .        .....|.|.++...
T Consensus         9 ~~P~i~~~p~--~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   86 (112)
T 3so5_A            9 PXPQITVQPE--TQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFT   86 (112)
T ss_dssp             CSCEEEECCC--CEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGG
T ss_pred             CCCeEEeCCC--CcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccc
Confidence            4677777765  4588999999999998743  4678999999877654321     1        11367999999999


Q ss_pred             CCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          72 QAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        72 ~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      |+|.|.|.+.|..+...+..+.|.|
T Consensus        87 D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           87 SEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             GCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999999987653344555543

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.41  E-value=1.2e-11  Score=67.38  Aligned_cols=86  Identities=17%  Similarity=0.229  Sum_probs=63.7

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eee---ccceEEEeecCCCCeEEEEEeec
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLE---GFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~---~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +|.|...+.. ...+..|+.+.|.|.+. .|.+.+.|++++..+.....  ...   ...|.|.++...|+|.|.|.+  
T Consensus         7 ~p~~~~~~~~-~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            7 GAAFAKILDP-AYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SCCEEECCCS-CEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCeEEecCCC-ccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            6777665553 35788999999999988 58889999999988754322  111   225999999999999999998  


Q ss_pred             CCCCceEEeEEEEEeeee
Q psy7616          83 GVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~  100 (147)
                        +. ....+.|.|..+|
T Consensus        83 --g~-~~~~~~l~V~~~P   97 (100)
T 2yuv_A           83 --GD-EKCSTELFVRSGP   97 (100)
T ss_dssp             --TT-EEEEEEEEECCSC
T ss_pred             --CC-ceEEEEEEEecCC
Confidence              23 3566667776655

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.41  E-value=2.2e-12  Score=70.76  Aligned_cols=90  Identities=19%  Similarity=0.297  Sum_probs=65.0

Q ss_pred             eCCceEEcCCCC-ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--ee---eccceEEEeecCCCCeEEEEEe
Q psy7616           7 VPPSIRTSPSNG-QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SL---EGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         7 ~~p~~~~~~~~~-~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~---~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      .+|.+...+... .+.+..|+.+.|.|.+.+.+.+ +.|++++..+.....  ..   ....|.|.++...|+|.|.|.+
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT   84 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence            356666665531 1578999999999999888888 999999877653322  11   1236999999999999999999


Q ss_pred             ecCCCCceEEeEEEEEeeeecC
Q psy7616          81 TNGVGDPVTVDMTLEVLCKILP  102 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~~  102 (147)
                      .|..+     .+.+.|..+|..
T Consensus        85 ~n~~~-----~~~l~V~~~P~p  101 (104)
T 2e6p_A           85 EGVSA-----FFGVTVQDPSGP  101 (104)
T ss_dssp             SSCCC-----CEEEEEECCCCS
T ss_pred             CCceE-----EEEEEEcCCCCC
Confidence            88632     445566666543

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.40  E-value=7.2e-14  Score=85.80  Aligned_cols=78  Identities=10%  Similarity=0.113  Sum_probs=53.0

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCC----CCceEEEecCCCCCCCc----------eeeeccceEEEeecCCCCe
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNP----VPSIIWSKKDSSLPSGE----------KSLEGFSITLEKVDRHQAG   74 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~g   74 (147)
                      |.+...++.....+..|+.+.|.|.+.+.+    ...+.|++++..+....          .......|.|.+++..|+|
T Consensus         2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G   81 (207)
T 2vol_A            2 SSVFIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTC
T ss_pred             CcEEEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCC
Confidence            445554443111267899999999987763    24799999886543211          1112346888888899999


Q ss_pred             EEEEEeecCCCC
Q psy7616          75 VYQCTATNGVGD   86 (147)
Q Consensus        75 ~y~C~~~~~~~~   86 (147)
                      .|.|.+.+..+.
T Consensus        82 ~Y~C~a~~~~~~   93 (207)
T 2vol_A           82 EFKCRVNSAAFP   93 (207)
T ss_dssp             CEEEEEECTTCS
T ss_pred             EEEEEEEccCCC
Confidence            999999886553

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.40  E-value=2.1e-12  Score=72.16  Aligned_cols=94  Identities=19%  Similarity=0.206  Sum_probs=68.0

Q ss_pred             eEEeCC-ceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee------eeccceEEEeecCCCCeEE
Q psy7616           4 LQMVPP-SIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS------LEGFSITLEKVDRHQAGVY   76 (147)
Q Consensus         4 ~~~~~p-~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~g~y   76 (147)
                      .+..+| .+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+......      .....|.|.++...|+|.|
T Consensus         8 ~V~~~p~~~~~~~~--~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   85 (115)
T 2cr6_A            8 LVQGRRVHIIEDLE--DVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI   85 (115)
T ss_dssp             CCCSSCCEEEECCC--EEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEE
T ss_pred             EEcCCCCeEeccCc--cEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEE
Confidence            344444 4444443  678999999999999999888999999998776543221      1234699999999999999


Q ss_pred             EEEeecCCCCceEEeEEEEEeeeecCCC
Q psy7616          77 QCTATNGVGDPVTVDMTLEVLCKILPSG  104 (147)
Q Consensus        77 ~C~~~~~~~~~~~~~~~l~v~~~~~~~~  104 (147)
                      .|.+.    . ....+.|.|..+|.+..
T Consensus        86 ~C~~g----~-~~~~~~L~V~~~p~~~~  108 (115)
T 2cr6_A           86 YFEAG----D-QRASAALRVTEKPSVFS  108 (115)
T ss_dssp             EEEET----T-EECCEEEEEECCSSCCS
T ss_pred             EEEEC----C-eeEEEEEEEECCCceec
Confidence            99942    2 35556777777776543

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=2.7e-12  Score=70.53  Aligned_cols=87  Identities=15%  Similarity=0.248  Sum_probs=63.3

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCC-CceEEEecCCCCCCCce--eee---ccceEEEeecCCCCeEEEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPV-PSIIWSKKDSSLPSGEK--SLE---GFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~w~~~~~~~~~~~~--~~~---~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      ++.|...+.  ...+..|+.+.|.|.+.+.+. +.+.|++++..+.....  ...   ...|.|.++...|+|.|.|.+.
T Consensus         8 p~~~~~~~~--~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   85 (104)
T 2eny_A            8 HVGITKRLK--TMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR   85 (104)
T ss_dssp             CCCCSBCCC--CEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET
T ss_pred             CCEEEecCC--CcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC
Confidence            344544444  668999999999999987664 47999999988754322  111   2369999999999999999885


Q ss_pred             cCCCCceEEeEEEEEeeeec
Q psy7616          82 NGVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~  101 (147)
                      +     ....+.|.|..+|.
T Consensus        86 ~-----~~~~a~L~V~~~p~  100 (104)
T 2eny_A           86 G-----LTSKASLIVRERSG  100 (104)
T ss_dssp             T-----EEEEECEEEECCCS
T ss_pred             C-----eeEEEEEEEeCCCc
Confidence            4     24566677776664

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.38  E-value=1e-11  Score=69.06  Aligned_cols=94  Identities=16%  Similarity=0.206  Sum_probs=67.2

Q ss_pred             EeCCceEEcCCC-CceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eee---ccceEEEeecCCCCeEEEEE
Q psy7616           6 MVPPSIRTSPSN-GQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLE---GFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         6 ~~~p~~~~~~~~-~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~---~~~l~~~~~~~~~~g~y~C~   79 (147)
                      ..+|.+...+.. ..+.+..|+.+.|.|.+. .+.+.+.|++++..+.....  ...   ...|.|.++...|+|.|.|.
T Consensus         8 ~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (113)
T 2cpc_A            8 TDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCE   86 (113)
T ss_dssp             CSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEE
T ss_pred             ccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEE
Confidence            345555555442 125778899999999985 68889999999877643322  111   24799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeeeecCCCC
Q psy7616          80 ATNGVGDPVTVDMTLEVLCKILPSGE  105 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~~~  105 (147)
                      +.|     .+..+.|.|..+|.+...
T Consensus        87 a~n-----~~~~~~l~V~~~p~~~~~  107 (113)
T 2cpc_A           87 IDD-----ESASFTVTVTEPPVRIIY  107 (113)
T ss_dssp             SSS-----CEEEEEEEEECCCCCCCC
T ss_pred             Eec-----CcEEEEEEEecCCchhcc
Confidence            988     256677777777755433

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.38  E-value=5.3e-12  Score=80.32  Aligned_cols=73  Identities=21%  Similarity=0.456  Sum_probs=50.7

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCC-----CCceEEEecC--CCC--------------CCCceee---eccceE
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNP-----VPSIIWSKKD--SSL--------------PSGEKSL---EGFSIT   64 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-----~~~v~w~~~~--~~~--------------~~~~~~~---~~~~l~   64 (147)
                      +.+...|.  .+.+..|+.++|.|.+.+.+     .+.+.|++..  ..+              .......   ....|.
T Consensus        16 ~~v~~~p~--~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~   93 (268)
T 1x9q_A           16 VVMTQTPL--SLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK   93 (268)
T ss_dssp             CCEEEECS--EECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ceEEeeCC--eEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence            34444444  55788999999999987766     4789999853  111              0011111   123699


Q ss_pred             EEeecCCCCeEEEEEeecC
Q psy7616          65 LEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        65 ~~~~~~~~~g~y~C~~~~~   83 (147)
                      |.+++..|+|.|.|.+.+.
T Consensus        94 I~~v~~~DsG~Y~C~~~~~  112 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTH  112 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSS
T ss_pred             ECCCChhHCEEEEEEEecC
Confidence            9999999999999999875

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.37  E-value=3e-12  Score=79.20  Aligned_cols=65  Identities=18%  Similarity=0.382  Sum_probs=46.6

Q ss_pred             eEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC--------------------CCce-ee-----eccceEEEeec
Q psy7616          20 LTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP--------------------SGEK-SL-----EGFSITLEKVD   69 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~--------------------~~~~-~~-----~~~~l~~~~~~   69 (147)
                      +.+..|+.+.|.|.+.+.+  .+.+.|++..  ....                    ..+. ..     ....|.|.+++
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   89 (222)
T 1q9r_B           10 GLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLR   89 (222)
T ss_dssp             CEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCC
T ss_pred             eeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEECcCC
Confidence            4788999999999988754  6789999853  1110                    0111 11     12379999999


Q ss_pred             CCCCeEEEEEeecCC
Q psy7616          70 RHQAGVYQCTATNGV   84 (147)
Q Consensus        70 ~~~~g~y~C~~~~~~   84 (147)
                      ..|+|.|.|.+.+..
T Consensus        90 ~~D~G~Y~C~~~~~~  104 (222)
T 1q9r_B           90 AEDSATYYCARDHDG  104 (222)
T ss_dssp             GGGCEEEEEEECCCS
T ss_pred             cccCeEEEEEEeccC
Confidence            999999999998753

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.36  E-value=1.8e-12  Score=70.79  Aligned_cols=73  Identities=18%  Similarity=0.289  Sum_probs=57.0

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc------eeee---ccceEEEeecCCCCeEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE------KSLE---GFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~------~~~~---~~~l~~~~~~~~~~g~y~   77 (147)
                      .||.+...+.  ...+..|+.+.|.|.+.+.+ +.+.|++++..+....      ....   ...|.|.++...|+|.|.
T Consensus         7 ~p~~~~~~~~--~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~   83 (101)
T 2edk_A            7 GPVLIVTPLE--DQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQ   83 (101)
T ss_dssp             CCCCEEECCC--CEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEE
T ss_pred             CCCEEEecCC--ceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEE
Confidence            4566666554  56899999999999998877 8999999998775432      1111   235889999999999999


Q ss_pred             EEeec
Q psy7616          78 CTATN   82 (147)
Q Consensus        78 C~~~~   82 (147)
                      |.+.+
T Consensus        84 C~a~n   88 (101)
T 2edk_A           84 VITNG   88 (101)
T ss_dssp             EECSS
T ss_pred             EEEcC
Confidence            99976

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=6.4e-11  Score=65.70  Aligned_cols=85  Identities=16%  Similarity=0.201  Sum_probs=62.9

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----------ee-ee----ccceEEEeecCCCC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----------KS-LE----GFSITLEKVDRHQA   73 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----------~~-~~----~~~l~~~~~~~~~~   73 (147)
                      |.+...+.  ...+..|+.+.|.|.+.+  .+.+.|++++..+....          +. ..    ...|.|.++...|+
T Consensus         9 ~~~~~~l~--d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~   84 (112)
T 2e6q_A            9 ARLVAGLE--DVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS   84 (112)
T ss_dssp             CCEEECCC--CEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTC
T ss_pred             cEEecCCC--CeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHC
Confidence            45555555  678999999999999986  77899999999986554          32 11    12699999999999


Q ss_pred             eEEEEEeecCCCCceEEeEEEEEeeeec
Q psy7616          74 GVYQCTATNGVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        74 g~y~C~~~~~~~~~~~~~~~l~v~~~~~  101 (147)
                      |.|.|...+.    ....+.|.|..+|.
T Consensus        85 G~Y~~~~~~~----~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           85 GALVGFSCPG----VQDSAALTIQESSG  108 (112)
T ss_dssp             SEEEEEEETT----EEEEEEEEEECSSC
T ss_pred             ccEEEEEECC----eeEEEEEEEeCCCc
Confidence            9997754432    24566777776653

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.36  E-value=2.9e-12  Score=69.10  Aligned_cols=80  Identities=23%  Similarity=0.376  Sum_probs=61.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-eeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ...+..|+.+.|.|.+.+  .+.+.|++++..+.... .......|.|.++...|+|.|.|.+.|..+.. ...+.+.|.
T Consensus        10 ~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~   86 (95)
T 4hwu_A           10 AYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLIGEYLQIKGATPRDSGLYACTAARTVDSE-TWIFMVNVT   86 (95)
T ss_dssp             EEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             cEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEeCCEEEECcCCcccCEEEEEEEccCCCcE-EEEEEEEEe
Confidence            457889999999999876  57899999987765432 23345689999999999999999999987753 666777766


Q ss_pred             eeec
Q psy7616          98 CKIL  101 (147)
Q Consensus        98 ~~~~  101 (147)
                      .++.
T Consensus        87 ~~~~   90 (95)
T 4hwu_A           87 DAAE   90 (95)
T ss_dssp             CC--
T ss_pred             CCcc
Confidence            5543

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=1.8e-11  Score=66.94  Aligned_cols=87  Identities=20%  Similarity=0.382  Sum_probs=63.1

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeecc---ceEEEeecCCCCeEEEEEeec
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGF---SITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~---~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +|.|...+.  .+.+..|+.+.|.|.. +.+.+.+.|++++..+.....  .....   .|.|.++...|+|.|.|.   
T Consensus         8 pp~~~~~~~--~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2dku_A            8 ANCFTEELT--NLQVEEKGTAVFTCKT-EHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD---   81 (103)
T ss_dssp             CCCCSSCCC--CEEEETTSEEEEEEEC-SSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE---
T ss_pred             CCEeEecCC--cEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE---
Confidence            556655554  6689999999999994 778889999999988754332  22223   699999999999999998   


Q ss_pred             CCCCceEEeEEEEEeeeecC
Q psy7616          83 GVGDPVTVDMTLEVLCKILP  102 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~~~  102 (147)
                       .+.. ...+.|.|...|..
T Consensus        82 -~g~~-~~~~~l~V~~~p~~   99 (103)
T 2dku_A           82 -IGQA-QSRAQLLVQGRRSG   99 (103)
T ss_dssp             -CSSC-BCCEEEEEECSCCC
T ss_pred             -eCCc-eEEEEEEEeCccCC
Confidence             2232 44566777665543

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.36  E-value=2e-12  Score=78.03  Aligned_cols=95  Identities=32%  Similarity=0.541  Sum_probs=71.6

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEee
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .+..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+.....  ......|.|.++...|+|.|.|.+.
T Consensus        96 ~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  173 (192)
T 2iep_A           96 QVKMKPKITRPPI--NVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAK  173 (192)
T ss_dssp             EEEEEEEEEECCC--CEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSCCGGGCEEEEEEEE
T ss_pred             EEEeCCccccCCc--ceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecCChhhCEEEEEEEE
Confidence            3456677666554  55788999999999998888889999999887754332  2345579999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeee
Q psy7616          82 NGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~  100 (147)
                      |..+...+..+.+.|..+|
T Consensus       174 n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          174 NSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             ETTEEEECCCEEEEEEC--
T ss_pred             cCCCcEEEEEEEEEEEeCC
Confidence            9877654455667666553

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.36  E-value=4.8e-11  Score=66.30  Aligned_cols=87  Identities=20%  Similarity=0.322  Sum_probs=64.3

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeecc---ceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGF---SITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~---~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .||.+...+.  ...+..|+.+.|.|.+.+.  +.+.|++++..+.....  .....   .|.|.++...|+|.|.|.+ 
T Consensus        18 ~pp~~~~~~~--~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a-   92 (113)
T 2edh_A           18 LPIKFTEGLR--NEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC-   92 (113)
T ss_dssp             SCCCEEECCC--CCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE-
T ss_pred             CCCcccccCC--ceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe-
Confidence            3457766655  4588999999999999764  78999999988764322  22222   6999999999999999999 


Q ss_pred             cCCCCceEEeEEEEEeeeecC
Q psy7616          82 NGVGDPVTVDMTLEVLCKILP  102 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~  102 (147)
                         +. ....+.|.|..+|..
T Consensus        93 ---~~-~~~~~~l~V~~~p~~  109 (113)
T 2edh_A           93 ---GK-ERTSAMLTVRAMPSG  109 (113)
T ss_dssp             ---TT-EEEEEEEEECCCCCS
T ss_pred             ---CC-CCEEEEEEEeCCCCC
Confidence               22 356677777766643

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.35  E-value=2.1e-11  Score=75.45  Aligned_cols=65  Identities=22%  Similarity=0.372  Sum_probs=46.5

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCC--CC-------------------CCCceee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDS--SL-------------------PSGEKSL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~--~~-------------------~~~~~~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|...+.+  .+.+.|++...  .+                   .......     ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRS   88 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCG
T ss_pred             CeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCCCh
Confidence            45788999999999987654  56799998531  10                   0011111     123799999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus        89 ~DsG~Y~C~~~~~  101 (220)
T 2fbj_H           89 EDTALYYCARLHY  101 (220)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             hhCEEEEEEEecc
Confidence            9999999998764

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.35  E-value=9.6e-12  Score=75.33  Aligned_cols=89  Identities=21%  Similarity=0.375  Sum_probs=68.3

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+..+|.+...+.  ...+..|+.+.|.|.+.+.|.+ .+.|++++..+...........|.|.+++  |+|.|.|.+.|
T Consensus       102 ~V~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~L~i~~~~--d~G~Y~C~a~N  177 (195)
T 2c5d_C          102 GLEGLPYFLEEPE--DRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLN--KTSSFSCEAHN  177 (195)
T ss_dssp             EECCSCEEEECCC--CEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTSSCCEEEEECCCS--SCEEEEEEEEE
T ss_pred             EEecCCeEEcCCC--cEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCcCCCCeEEEcccc--cCceEEEEEEc
Confidence            4456777776655  4588899999999999998999 89999999887644333455678888876  78999999999


Q ss_pred             CCCCceEEeEEEEE
Q psy7616          83 GVGDPVTVDMTLEV   96 (147)
Q Consensus        83 ~~~~~~~~~~~l~v   96 (147)
                      ..|...+..+.|.|
T Consensus       178 ~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          178 AKGVTTSRTATITV  191 (195)
T ss_dssp             TTEEEECCCEEEEE
T ss_pred             CCCceEEEEEEEEE
Confidence            87764335666666

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.34  E-value=1.4e-11  Score=67.31  Aligned_cols=87  Identities=24%  Similarity=0.409  Sum_probs=62.5

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeecc---ceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGF---SITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~---~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.+.+ +.|++++..+.....  .....   .|.|.++...|+|.|.|.+.
T Consensus         7 ~pp~~~~~~~--~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~g   83 (103)
T 2e7b_A            7 GPVRFQEALK--DLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCSFG   83 (103)
T ss_dssp             CCCCCTBCCC--CEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEECS
T ss_pred             CCCEEEecCc--cEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEEEC
Confidence            3566655444  5689999999999999888888 999999887753322  22222   49999999999999999832


Q ss_pred             cCCCCceEEeEEEEEeeeec
Q psy7616          82 NGVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~  101 (147)
                      +     ....+.|.|..+|.
T Consensus        84 ~-----~~~~~~l~V~~~p~   98 (103)
T 2e7b_A           84 D-----QTTSATLTVTALPS   98 (103)
T ss_dssp             S-----CBCCBCEEEECCCC
T ss_pred             C-----cEEEEEEEEEeccc
Confidence            2     24445566665554

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=2.6e-12  Score=69.92  Aligned_cols=79  Identities=19%  Similarity=0.435  Sum_probs=60.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      .+.+..|+.+.|.|.+.+.+ +.+.|++++..+..... ......|.|.++...|+|.|.|.+.|..+.. ...+.+.|.
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~   89 (99)
T 2cr3_A           12 SFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSGSD-TTYFSVNVS   89 (99)
T ss_dssp             ECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEECSSEEEETTCCTTTCEEEEEEEEETTEEE-EEEEEECBC
T ss_pred             CeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEECCEEEEccCCHHHCEEEEEEEEeCCceE-EEEEEEEEe
Confidence            34677899999999998865 79999999987754322 2335689999999999999999999987663 555556554


Q ss_pred             ee
Q psy7616          98 CK   99 (147)
Q Consensus        98 ~~   99 (147)
                      ..
T Consensus        90 ~~   91 (99)
T 2cr3_A           90 DA   91 (99)
T ss_dssp             SC
T ss_pred             cC
Confidence            43

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.34  E-value=1.3e-11  Score=67.89  Aligned_cols=73  Identities=15%  Similarity=0.272  Sum_probs=58.1

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeec---cceEEEeecCCCCeEEEEEeec
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEG---FSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~---~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +|.+...+.  .+.+..|+.+.|.|.+.+.+.+ +.|++++..+.....  ....   ..|.|.++...|+|.|.|.+.|
T Consensus         8 ~p~~~~~~~--~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (106)
T 2dlt_A            8 QLEVLQDIA--DLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG   84 (106)
T ss_dssp             CCCEEECCC--CEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred             CCEEecCCC--CeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence            566766665  5689999999999999887766 999999987754322  2222   3799999999999999999998


Q ss_pred             C
Q psy7616          83 G   83 (147)
Q Consensus        83 ~   83 (147)
                      .
T Consensus        85 ~   85 (106)
T 2dlt_A           85 Y   85 (106)
T ss_dssp             S
T ss_pred             C
Confidence            7

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.33  E-value=4.4e-12  Score=77.80  Aligned_cols=65  Identities=22%  Similarity=0.413  Sum_probs=46.4

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCC------------------CCCceee-----eccceEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSL------------------PSGEKSL-----EGFSITLEKVDRH   71 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~------------------~~~~~~~-----~~~~l~~~~~~~~   71 (147)
                      .+.+..|+.+.|.|.+.+.+  .+.+.|++..  ...                  .......     ....|.|.+++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~   88 (210)
T 3d9a_H            9 PSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSVTTE   88 (210)
T ss_dssp             CSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             CEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCCCcc
Confidence            34788999999999988764  3789999853  111                  0111111     1237999999999


Q ss_pred             CCeEEEEEeecC
Q psy7616          72 QAGVYQCTATNG   83 (147)
Q Consensus        72 ~~g~y~C~~~~~   83 (147)
                      |+|.|.|.+.+.
T Consensus        89 D~G~Y~C~~~~~  100 (210)
T 3d9a_H           89 DTATYYCANWDG  100 (210)
T ss_dssp             GCEEEEEEETTS
T ss_pred             cCEEEEEEEecC
Confidence            999999999874

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.32  E-value=1.4e-11  Score=77.29  Aligned_cols=65  Identities=12%  Similarity=0.337  Sum_probs=47.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC----------------CCCCC----Cce-ee----eccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD----------------SSLPS----GEK-SL----EGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~----------------~~~~~----~~~-~~----~~~~l~~~~~~~~~~   73 (147)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++..                .....    .+. ..    ....|.|.+++..|+
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   89 (246)
T 4dzb_B           10 WVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVTSAHPEDS   89 (246)
T ss_dssp             EEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEECCCCHHHC
Confidence            568889999999999988888899999821                11100    011 11    123699999999999


Q ss_pred             eEEEEEeecC
Q psy7616          74 GVYQCTATNG   83 (147)
Q Consensus        74 g~y~C~~~~~   83 (147)
                      |.|.|.+.+.
T Consensus        90 G~Y~C~~~~~   99 (246)
T 4dzb_B           90 SFYICSARTS   99 (246)
T ss_dssp             EEEEEEECCS
T ss_pred             EEEEEEEecC
Confidence            9999999753

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.32  E-value=1.2e-11  Score=76.41  Aligned_cols=66  Identities=21%  Similarity=0.410  Sum_probs=47.2

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCC-C----C------------------CCCceee-----eccceEEEee
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDS-S----L------------------PSGEKSL-----EGFSITLEKV   68 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~-~----~------------------~~~~~~~-----~~~~l~~~~~   68 (147)
                      .+.+..|+.+.|.|.+.+.+  .+.+.|++... .    +                  .......     ....|.|.++
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   88 (220)
T 1pz5_B            9 GGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQMNNL   88 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             CEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEEccC
Confidence            45788999999999988755  57899998531 1    0                  0011111     1227999999


Q ss_pred             cCCCCeEEEEEeecCC
Q psy7616          69 DRHQAGVYQCTATNGV   84 (147)
Q Consensus        69 ~~~~~g~y~C~~~~~~   84 (147)
                      +..|+|.|.|.+.+..
T Consensus        89 ~~~D~G~Y~C~~~~~~  104 (220)
T 1pz5_B           89 RAEDTGIYYCTRGGAV  104 (220)
T ss_dssp             CGGGCEEEEEEEECTT
T ss_pred             CHHHCEEEEEEEecCC
Confidence            9999999999998753

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.32  E-value=1.8e-11  Score=75.31  Aligned_cols=92  Identities=20%  Similarity=0.293  Sum_probs=65.4

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCC--CCceEEEecCCCCCCCce-------------eeeccceEEEeecCCCC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNP--VPSIIWSKKDSSLPSGEK-------------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~   73 (147)
                      |.+...+.. .+.+..|+.+.|.|.+.+.+  .+.+.|++++..+.....             ......|.|.+++..|+
T Consensus       105 p~~~~~~~~-~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~  183 (213)
T 2x1w_L          105 YDVVLSPSH-GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQ  183 (213)
T ss_dssp             EEEEEESCS-CEEEETTCCEEEEEEEEECTTBCCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGC
T ss_pred             cceEEcCCC-CeEEcCCCCEEEEEEEECCCCCceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccC
Confidence            344454443 45788999999999988754  347999998877532111             11234599999999999


Q ss_pred             eEEEEEeecCCCCceEEeEEEEEeeeecC
Q psy7616          74 GVYQCTATNGVGDPVTVDMTLEVLCKILP  102 (147)
Q Consensus        74 g~y~C~~~~~~~~~~~~~~~l~v~~~~~~  102 (147)
                      |.|.|.+.|..+.. +..+.|.|...|.+
T Consensus       184 G~Y~C~a~N~~g~~-~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          184 GLYTCAASSGLMTK-KNSTFVRVHEDPIE  211 (213)
T ss_dssp             EEEEEEEECSSCEE-EEEEEEEEEC----
T ss_pred             EEEEEEEecCCCcE-EEEEEEEEeccccc
Confidence            99999999988775 77888888877754

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.31  E-value=2.9e-11  Score=66.63  Aligned_cols=85  Identities=21%  Similarity=0.343  Sum_probs=62.4

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeecc---ceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGF---SITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~---~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .||.+...+.  ...+..|+.+.|.|.+.+.  +.+.|++++..+.....  .....   .|.|.++...|+|.|.|.+.
T Consensus         7 ~pp~~~~~~~--~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   82 (108)
T 2dm7_A            7 GPARFTQDLK--TKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMCG   82 (108)
T ss_dssp             CCCCBCSCCB--CCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEET
T ss_pred             CCCeeeecCC--cEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEEc
Confidence            4677766554  5689999999999998764  68999999887754322  22223   49999999999999999994


Q ss_pred             cCCCCceEEeEEEEEeeee
Q psy7616          82 NGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~  100 (147)
                      +     ....+.+.|..+|
T Consensus        83 n-----~~~~~~l~V~~~p   96 (108)
T 2dm7_A           83 Q-----ERTSATLTVRALP   96 (108)
T ss_dssp             T-----EEEEEECEEECCC
T ss_pred             C-----CEEEEEEEEecCC
Confidence            4     2555666666544

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.31  E-value=3.1e-13  Score=83.61  Aligned_cols=78  Identities=14%  Similarity=0.144  Sum_probs=54.8

Q ss_pred             eCCceEEcCCCCceE-EeeCCeEEEEEeecCC---CC-CceEEEecCCCCCCCc----------eeeeccceEEEeecCC
Q psy7616           7 VPPSIRTSPSNGQLT-VRKGGTITLECKASGN---PV-PSIIWSKKDSSLPSGE----------KSLEGFSITLEKVDRH   71 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~-~~~g~~~~l~C~~~~~---~~-~~v~w~~~~~~~~~~~----------~~~~~~~l~~~~~~~~   71 (147)
                      .+|.+...++.. .. +..|+.+.|.|.+.+.   +. +.+.|++++..+....          .......|.|.++...
T Consensus         8 ~~p~v~~~pp~~-~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   86 (218)
T 2rgs_A            8 GGPSVFIFPPNI-KDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM   86 (218)
T ss_dssp             -CCEEEEECCCH-HHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred             CCCEEEEECcCH-HHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence            467776666532 11 6789999999998775   33 6899999986654221          1112346888888999


Q ss_pred             CCeEEEEEeecCCC
Q psy7616          72 QAGVYQCTATNGVG   85 (147)
Q Consensus        72 ~~g~y~C~~~~~~~   85 (147)
                      |.|.|.|.+.+..+
T Consensus        87 D~g~Y~C~~~~~~~  100 (218)
T 2rgs_A           87 SGKEFKCKVNNKDL  100 (218)
T ss_dssp             TTCCEEEEEEETTC
T ss_pred             CCCeEEEEEECCcC
Confidence            99999999988654

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.31  E-value=9.2e-12  Score=80.22  Aligned_cols=65  Identities=23%  Similarity=0.433  Sum_probs=47.2

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCC--CCC------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDS--SLP------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~--~~~------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|...+.+  .+.+.|++...  .+.                  ..+. ..     ....|.|.+++.
T Consensus        31 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  110 (291)
T 2gki_A           31 PELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSSLTS  110 (291)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECSCCG
T ss_pred             cEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECcCCH
Confidence            56889999999999987755  47899998532  110                  0111 11     123699999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus       111 ~DsG~Y~C~~~~~  123 (291)
T 2gki_A          111 EDSAVYYCARGAY  123 (291)
T ss_dssp             GGCEEEEEEEECG
T ss_pred             HHCEEEEEEEecc
Confidence            9999999998875

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.30  E-value=1.9e-11  Score=75.05  Aligned_cols=90  Identities=29%  Similarity=0.531  Sum_probs=68.0

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC--ceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG--EKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      |.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+...  ......+.|.|.++...|+|.|.|.+.|..|.
T Consensus       111 p~~~~~~~--~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~  188 (212)
T 2yd1_A          111 PVITQGPG--TRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIENSREEDQGKYECVAENSMGT  188 (212)
T ss_dssp             CEEEECCC--CEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETTEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CeeEeCCC--ceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCCeEEEccCChhhCEEEEEEeecCCCc
Confidence            55555554  457888999999999999899999999998877532  22334568999999999999999999998877


Q ss_pred             ceEEeEEEEEeeee
Q psy7616          87 PVTVDMTLEVLCKI  100 (147)
Q Consensus        87 ~~~~~~~l~v~~~~  100 (147)
                      .....+.|.|....
T Consensus       189 ~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          189 EHSKATNLYVKVRR  202 (212)
T ss_dssp             EECCCEEEEEEC--
T ss_pred             eeEEEEEEEEEecc
Confidence            53334667666543

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.30  E-value=1e-13  Score=78.30  Aligned_cols=92  Identities=27%  Similarity=0.405  Sum_probs=69.3

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCc-eEEEecCCCCCCC---ceee------e--ccceEEEeecC
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSG---EKSL------E--GFSITLEKVDR   70 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~w~~~~~~~~~~---~~~~------~--~~~l~~~~~~~   70 (147)
                      +.+..+|.+.. +.  ...+..|+.+.|.|.+.+.|.|. +.|++++..+...   ....      .  ...|.|.++..
T Consensus         9 l~V~~~P~i~~-~~--~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   85 (122)
T 2cry_A            9 LTVNGPPIISS-TQ--TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVR   85 (122)
T ss_dssp             CCCCSSCCEEE-EC--CCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCH
T ss_pred             EEEecCCCccC-CC--eEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCCh
Confidence            45667888877 44  45788999999999999999887 9999998776531   1111      1  33788899999


Q ss_pred             CCC-eEEEEEeecCCCCceEEeEEEEEee
Q psy7616          71 HQA-GVYQCTATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        71 ~~~-g~y~C~~~~~~~~~~~~~~~l~v~~   98 (147)
                      .|. |.|.|.+.|..|.. ...+.|.+..
T Consensus        86 ~D~~G~Y~C~a~N~~G~~-~~~~~l~V~~  113 (122)
T 2cry_A           86 ADFQTIYNCTAWNSFGSD-TEIIRLKEQG  113 (122)
T ss_dssp             HHHHSCEEEEEECSSCEE-EEEECCCCSC
T ss_pred             hhCCceEEEEEECCCCeE-EEEEEEEECC
Confidence            998 99999999988875 5555555443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.30  E-value=7.1e-12  Score=82.41  Aligned_cols=65  Identities=26%  Similarity=0.490  Sum_probs=47.0

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.+.|.|.+.+.+  .+.+.|+++.  ..+.                  ..+. ..     ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (344)
T 1za6_B            9 AEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSSLRS   88 (344)
T ss_dssp             CEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECCCCc
Confidence            45788999999999987753  5789999863  2210                  0111 11     123799999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus        89 ~D~G~Y~C~~~n~  101 (344)
T 1za6_B           89 EDTAVYFCTRSLN  101 (344)
T ss_dssp             GGCEEEEEEETTT
T ss_pred             ccCEEEEEEEecC
Confidence            9999999999874

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.29  E-value=1.2e-11  Score=76.85  Aligned_cols=65  Identities=26%  Similarity=0.439  Sum_probs=47.2

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCC--CCC------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDS--SLP------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~--~~~------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|++++|.|.+.+.+  .+.+.|++...  .+.                  ..+. ..     ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (227)
T 1mju_H            9 AELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTS   88 (227)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECCCCc
Confidence            45788999999999988765  57899998642  110                  0111 11     134799999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus        89 ~D~G~Y~C~~~~~  101 (227)
T 1mju_H           89 DDSAVYYCANKLG  101 (227)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             ccCEEEEEEECCC
Confidence            9999999998764

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.29  E-value=3.5e-11  Score=69.83  Aligned_cols=83  Identities=24%  Similarity=0.372  Sum_probs=61.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEe---------cCCCCCCCcee-e----eccceEEEeecCCCCeEEEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSK---------KDSSLPSGEKS-L----EGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~---------~~~~~~~~~~~-~----~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .+.+..|++++|.|.+.+.+.+.+.|++         ++..+...... .    ....|.|.+++..|+|.|.|.+.+. 
T Consensus        47 ~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~-  125 (145)
T 1z9m_A           47 DETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCSIFTM-  125 (145)
T ss_dssp             CEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEEECSS-
T ss_pred             eEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEEEEcC-
Confidence            6789999999999999888888999994         32222221111 1    2457999999999999999999998 


Q ss_pred             CCceEEeEEEEEeeeecCC
Q psy7616          85 GDPVTVDMTLEVLCKILPS  103 (147)
Q Consensus        85 ~~~~~~~~~l~v~~~~~~~  103 (147)
                      +. ....+.|.|..+|..+
T Consensus       126 ~~-~~~~~~L~V~~~P~~P  143 (145)
T 1z9m_A          126 PV-RTAKSLVTVLGIPQKP  143 (145)
T ss_dssp             SC-EEEEEEEEEECCCC--
T ss_pred             CC-ceEEEEEEEEeCCCCC
Confidence            55 4777788887776543

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.29  E-value=5.2e-11  Score=67.34  Aligned_cols=83  Identities=27%  Similarity=0.402  Sum_probs=60.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCC---------CCCce-ee----eccceEEEeecCCCCeEEEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSL---------PSGEK-SL----EGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~---------~~~~~-~~----~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .+.+..|++++|.|.+.+.+.+.+.|++.+..+         ..... ..    ....|.|.+++..|+|.|.|.+.+. 
T Consensus        10 ~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~-   88 (124)
T 3rbg_A           10 TITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHYSD-   88 (124)
T ss_dssp             EEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEESS-
T ss_pred             cEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEEcC-
Confidence            568889999999999988888999999766542         11111 11    1357999999999999999999988 


Q ss_pred             CCceEEeEEEEEeeeecCC
Q psy7616          85 GDPVTVDMTLEVLCKILPS  103 (147)
Q Consensus        85 ~~~~~~~~~l~v~~~~~~~  103 (147)
                      +. ....+.|.|..+|...
T Consensus        89 g~-~~~~~~l~V~~~P~~~  106 (124)
T 3rbg_A           89 SV-STKEVKVIVLATMKGE  106 (124)
T ss_dssp             SE-EEEEEEEEEECC----
T ss_pred             CC-CcEEEEEEEEeCCCCC
Confidence            44 4677778887766543

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.28  E-value=1e-10  Score=70.52  Aligned_cols=91  Identities=24%  Similarity=0.437  Sum_probs=66.7

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEe--cCCCCC----CCce-ee---eccceEEEeec-CC
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--KDSSLP----SGEK-SL---EGFSITLEKVD-RH   71 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~--~~~~~~----~~~~-~~---~~~~l~~~~~~-~~   71 (147)
                      ..+..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++  ++..+.    .... ..   ....|.|.++. ..
T Consensus        87 l~V~~~p~~~~~~~--~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~  164 (190)
T 2wv3_A           87 IEVKAAPDITGHKR--SENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITE  164 (190)
T ss_dssp             EEEECCCEEEEECS--EEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEEECSSEEEEEECSCCTTT
T ss_pred             EEEecCCcccccCC--cceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEecCCCeeEEEEEeccccC
Confidence            44567888876655  4578899999999999998999999999  443321    1111 11   12369999999 69


Q ss_pred             CCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          72 QAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        72 ~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      |+|.|.|.+.|..+.. ...+.|.|
T Consensus       165 d~G~Y~C~a~N~~g~~-~~~~~l~V  188 (190)
T 2wv3_A          165 DPGEYECNATNSIGSA-SVSTVLRV  188 (190)
T ss_dssp             SCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             CCEEEEEEEEecCCcc-eeEEEEEE
Confidence            9999999999988764 56665554

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.28  E-value=3.6e-11  Score=71.96  Aligned_cols=88  Identities=22%  Similarity=0.382  Sum_probs=66.0

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEee
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      ..+..+|.+...+.  ...+..|+.+.|.|.+.+.|.+ .+.|++++..+.....  ....|.+.++  .|+|.|.|.+.
T Consensus        93 l~V~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~--~~~~L~i~~~--~d~G~Y~C~a~  166 (182)
T 1rhf_A           93 LTVEGVPFFTVEPK--DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP--SPSVLNVTGV--TQSTMFSCEAH  166 (182)
T ss_dssp             EEEECSCEEEECCC--CEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE--SSEEEEECCC--SSCEEEEEEEE
T ss_pred             EEEecCCeEEecCc--ceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC--CceEEEEecc--ccCeEEEEEEE
Confidence            34556888777665  4578899999999999998988 8999999877754322  4566777776  58899999999


Q ss_pred             cCCCCceEEeEEEEE
Q psy7616          82 NGVGDPVTVDMTLEV   96 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v   96 (147)
                      |..|...+..+.|.|
T Consensus       167 N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          167 NLKGLASSRTATVHL  181 (182)
T ss_dssp             ETTEEEECCCEEEEE
T ss_pred             CCCCCcccceEEEEe
Confidence            987764233555543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.28  E-value=2.4e-11  Score=74.61  Aligned_cols=91  Identities=29%  Similarity=0.448  Sum_probs=66.7

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc---e--e---eeccceEEEeecCCCCeEEEEEe
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE---K--S---LEGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~---~--~---~~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      |.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+....   .  .   .....|.|.++...|+|.|.|.+
T Consensus       109 p~~~~~~~--~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  186 (212)
T 2yd6_A          109 PTIDMGPQ--LKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVA  186 (212)
T ss_dssp             CEEEECCC--CEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceeecCCc--ceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEE
Confidence            45555444  4577889999999999998999999999987765321   1  1   12367899999999999999999


Q ss_pred             ecCCCCceEEeEEEEEeeeec
Q psy7616          81 TNGVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~~  101 (147)
                      .|..|...+..+.+.+..++.
T Consensus       187 ~N~~G~~~s~~a~l~~~~~~~  207 (212)
T 2yd6_A          187 TNSAGTRYSAPANLYVRGTKH  207 (212)
T ss_dssp             EETTEEEECCCEEEEEEC---
T ss_pred             ECCCCccccccccEEEEeccc
Confidence            999887656667777766554

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.28  E-value=8.6e-12  Score=76.63  Aligned_cols=83  Identities=18%  Similarity=0.348  Sum_probs=63.1

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CCCceEEEecCCCCCCCcee---eeccceEEEeecCCCCeEEEEEeecC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKS---LEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      +|.|...+   ...+..|+.+.|.|.+.+. |.|.+.|++++..+......   .....|.|.++...|+|.|+|.+.|.
T Consensus       117 ~P~~~~~~---~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~  193 (207)
T 3rbs_A          117 GPHFVEYL---SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDD  193 (207)
T ss_dssp             SSEEEEEE---EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCCSSEEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             CCceEecC---CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEcCCCEEEEEECCCCcccCEEEEEEEEcC
Confidence            56554433   2477899999999999998 89999999999877543221   22346999999999999999999998


Q ss_pred             CCCceEEeEEE
Q psy7616          84 VGDPVTVDMTL   94 (147)
Q Consensus        84 ~~~~~~~~~~l   94 (147)
                      .|.. ...+.|
T Consensus       194 ~G~~-~~~~~L  203 (207)
T 3rbs_A          194 RGKD-KSRLKL  203 (207)
T ss_dssp             TEEE-EEEEEE
T ss_pred             CCEE-EEEEEE
Confidence            8764 555544

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.27  E-value=1.1e-11  Score=75.85  Aligned_cols=87  Identities=28%  Similarity=0.465  Sum_probs=64.2

Q ss_pred             ceEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCC--ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          19 QLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSG--EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      ...+..|+.+.|.|.+ .+.|.+.+.|++++..+...  ........|.|.++...|+|.|.|.+.|..+...+..+.|.
T Consensus       120 ~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~  199 (212)
T 2v9r_A          120 DVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELT  199 (212)
T ss_dssp             CEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeEEEeeCCHhhCeeEEEEEecccCceecceEEEE
Confidence            4578899999999998 78888999999998776532  22335568999999999999999999998776433457888


Q ss_pred             EeeeecCCCC
Q psy7616          96 VLCKILPSGE  105 (147)
Q Consensus        96 v~~~~~~~~~  105 (147)
                      |..+|.+...
T Consensus       200 V~~~P~~~~~  209 (212)
T 2v9r_A          200 VLERPSFVKA  209 (212)
T ss_dssp             EEC-------
T ss_pred             EEeCchHhhh
Confidence            8888776543

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.27  E-value=4.4e-11  Score=73.18  Aligned_cols=89  Identities=24%  Similarity=0.473  Sum_probs=66.4

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eee-----ccceEEEeecCCCCeEEEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLE-----GFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~-----~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +|.+....+ ....+..|+.+.|.|.+.+.|.+.+.|++++..+..... ...     ...|.|.+++..|.|.|.|.+.
T Consensus       116 ~p~~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  194 (212)
T 2r15_A          116 RARVLGGLP-DVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVK  194 (212)
T ss_dssp             SCEEEEBCC-SEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCcccccCC-CcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEE
Confidence            344444332 256788999999999999999999999999877654322 111     2379999999999999999999


Q ss_pred             cCCCCceEEeEEEEEee
Q psy7616          82 NGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~   98 (147)
                      |..+.. ...+.+.+..
T Consensus       195 N~~g~~-~~~~~l~V~~  210 (212)
T 2r15_A          195 NKYGSE-TSDFTVSVFI  210 (212)
T ss_dssp             ETTEEE-EEEEEEEEEC
T ss_pred             cCCCcE-EEEEEEEEEc
Confidence            988764 6666666653

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.27  E-value=6.1e-11  Score=63.88  Aligned_cols=69  Identities=17%  Similarity=0.362  Sum_probs=52.7

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eee---ccceEEEeecCCCCeEEEEEe
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLE---GFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~---~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      |.|...+.  ...+..|+.+.|.|.+ +.+.+.+.|++++..+.....  ...   ...|.|.++...|+|.|.|.+
T Consensus         9 ~~~~~~~~--~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A            9 SAFSKKPR--SVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CCCSBCCC--CEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE
T ss_pred             CeeEeCCC--cEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE
Confidence            44444443  6689999999999999 668889999999877643322  111   236999999999999999999

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.27  E-value=3.4e-11  Score=72.99  Aligned_cols=88  Identities=30%  Similarity=0.491  Sum_probs=68.4

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-eeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-LEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+...... .....|.|.++...|+|.|.|.+.|..+
T Consensus       112 ~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g  189 (201)
T 3s97_C          112 YPADIVVQFK--DVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSGAVLKIFNIQLEDEGIYECEAENIRG  189 (201)
T ss_dssp             EEEEEEEECC--CEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEETTTTEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             CCCceEecCC--ceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecCCCCEEEEccCChhhCEEEEEEEEecCC
Confidence            3555655554  557889999999999988899999999999877644332 3456799999999999999999999877


Q ss_pred             CceEEeEEEEEe
Q psy7616          86 DPVTVDMTLEVL   97 (147)
Q Consensus        86 ~~~~~~~~l~v~   97 (147)
                      .. +..+.+.|.
T Consensus       190 ~~-~~~~~l~V~  200 (201)
T 3s97_C          190 KD-KHQARIYVQ  200 (201)
T ss_dssp             EE-EEEEEEEEE
T ss_pred             ce-eeeEEEEEe
Confidence            64 556656553

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.27  E-value=2.9e-11  Score=73.88  Aligned_cols=92  Identities=25%  Similarity=0.441  Sum_probs=66.4

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEe-ecCCCCCceEEEecCC-CCCCCce------------eeeccceEEEeec
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECK-ASGNPVPSIIWSKKDS-SLPSGEK------------SLEGFSITLEKVD   69 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~-~~~~~~~~v~w~~~~~-~~~~~~~------------~~~~~~l~~~~~~   69 (147)
                      .+..+|.+...+..  ..+..|+.+.|.|. ..+.|.+.+.|++++. .+.....            ......|.|.++.
T Consensus       100 ~V~~~p~~~~~~~~--~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  177 (212)
T 1f97_A          100 TVLVPPSKPTISVP--SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVT  177 (212)
T ss_dssp             EEEBCCCCCEEECC--SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCC
T ss_pred             EEEcCCCCcccCCc--cccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCCceEEEEecC
Confidence            34456666444432  36889999999999 6888899999999998 7653221            1235679999999


Q ss_pred             CCCCeEEEEEeecCCCCc-eEEeEEEEEe
Q psy7616          70 RHQAGVYQCTATNGVGDP-VTVDMTLEVL   97 (147)
Q Consensus        70 ~~~~g~y~C~~~~~~~~~-~~~~~~l~v~   97 (147)
                      ..|.|.|.|.+.|..+.. .+..+.+.+.
T Consensus       178 ~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~  206 (212)
T 1f97_A          178 AFDSGEYYCQAQNGYGTAMRSEAAHMDAV  206 (212)
T ss_dssp             GGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             hhhCcEEEEEEccccCCccccceEEEEEE
Confidence            999999999999988775 3445555544

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.27  E-value=8.7e-12  Score=74.98  Aligned_cols=92  Identities=29%  Similarity=0.531  Sum_probs=66.6

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee---eeccceEEEeecCCCCeEEEEEee
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---LEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +..+|.+...+......+..|+.+.|.|.+.+.|.+.+.|++++..+......   .....|.|.++...|+|.|.|.+.
T Consensus        93 v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  172 (189)
T 2v5t_A           93 VNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRAT  172 (189)
T ss_dssp             EEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEETTTTEEEECSCCGGGCEEEEEEEE
T ss_pred             ecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEecCCCEEEEcCCChhhCeeEEEEEE
Confidence            34455555443322345667999999999988888999999998877544322   134569999999999999999999


Q ss_pred             cCCCCceEEeEEEEEe
Q psy7616          82 NGVGDPVTVDMTLEVL   97 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~   97 (147)
                      |..+.. ...+.+.|.
T Consensus       173 n~~g~~-~~~~~l~V~  187 (189)
T 2v5t_A          173 NKAGED-EKQAFLQVF  187 (189)
T ss_dssp             ETTEEE-EEEEEEEEE
T ss_pred             eCCCce-eEEEEEEEE
Confidence            987764 555555543

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.26  E-value=4.4e-11  Score=72.20  Aligned_cols=87  Identities=25%  Similarity=0.459  Sum_probs=65.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--ee---ccceEEEeecCCCCeEEEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--LE---GFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~~---~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+......  ..   ...|.|.++...|+|.|.|.+.
T Consensus       102 ~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  179 (194)
T 2a38_A          102 APPNFVQRLQ--SMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNAT  179 (194)
T ss_dssp             EEEEEEECCC--CEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEE
T ss_pred             CCCEEEeCCc--cEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEE
Confidence            3555555554  457889999999999988889999999998877543221  11   1268899999999999999999


Q ss_pred             cCCCCceEEeEEEEE
Q psy7616          82 NGVGDPVTVDMTLEV   96 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v   96 (147)
                      |..|.. ...+.|.|
T Consensus       180 n~~g~~-~~~~~l~V  193 (194)
T 2a38_A          180 NSVGRA-TSTAELLV  193 (194)
T ss_dssp             ETTEEE-EEEEEEEE
T ss_pred             eCCCce-EEEEEEEE
Confidence            987764 55555544

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.26  E-value=6.9e-11  Score=64.84  Aligned_cols=74  Identities=15%  Similarity=0.234  Sum_probs=56.1

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-c--eeeecc---ceEEEeecCCCCeEEEEEe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-E--KSLEGF---SITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-~--~~~~~~---~l~~~~~~~~~~g~y~C~~   80 (147)
                      .+|.|...+.. ...+..|+.+.|.|.+ +.+.+.+.|++++..+... .  ......   .|.|.++...|+|.|.|.+
T Consensus        14 ~~p~f~~~~~~-~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   91 (104)
T 1pd6_A           14 KSTAFQKKLEP-AYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV   91 (104)
T ss_dssp             TTSSCSEECCS-EEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             CCCEEEEcCCC-cEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence            35666655543 3688999999999998 6788889999999877543 2  122223   7999999999999999999


Q ss_pred             ec
Q psy7616          81 TN   82 (147)
Q Consensus        81 ~~   82 (147)
                      .+
T Consensus        92 ~~   93 (104)
T 1pd6_A           92 GG   93 (104)
T ss_dssp             TT
T ss_pred             CC
Confidence            44

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.26  E-value=2.1e-12  Score=84.15  Aligned_cols=64  Identities=16%  Similarity=0.264  Sum_probs=46.3

Q ss_pred             EEeeCCeEEEEEeecCC-CCC---ceEEEecCCCC-CCCce---------eeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          21 TVRKGGTITLECKASGN-PVP---SIIWSKKDSSL-PSGEK---------SLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~-~~~---~v~w~~~~~~~-~~~~~---------~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .+..|+.+.|.|.+.+. |.+   .+.|+++++.. .....         ....+.|.|.++...|.|.|.|.+.+..
T Consensus       124 ~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~  201 (323)
T 2wqr_A          124 DLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH  201 (323)
T ss_dssp             HHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             HhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCC
Confidence            45679999999998774 455   89999975433 21110         1123468899999999999999998864

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.25  E-value=6.5e-11  Score=73.99  Aligned_cols=62  Identities=16%  Similarity=0.389  Sum_probs=44.9

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCC-------------------CCCceee----eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSL-------------------PSGEKSL----EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~-------------------~~~~~~~----~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|+.+.|.|...+ +.+.+.|++.....                   .......    ....|.|.+++..|+|.
T Consensus        11 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~   89 (240)
T 3q5y_A           11 HIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM   89 (240)
T ss_dssp             EEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred             eeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcCChhHCEE
Confidence            568889999999999876 77789999832110                   0011111    13369999999999999


Q ss_pred             EEEEee
Q psy7616          76 YQCTAT   81 (147)
Q Consensus        76 y~C~~~   81 (147)
                      |.|.+.
T Consensus        90 Y~C~~~   95 (240)
T 3q5y_A           90 YFCASS   95 (240)
T ss_dssp             EEEEEE
T ss_pred             EEEEEc
Confidence            999996

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.25  E-value=3.9e-11  Score=74.44  Aligned_cols=66  Identities=18%  Similarity=0.382  Sum_probs=47.7

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|.+.+.+  .+.+.|++..  ..+.                  ..+. ..     ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRV   88 (225)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            35788999999999988765  5789999853  1110                  0111 11     134799999999


Q ss_pred             CCCeEEEEEeecCC
Q psy7616          71 HQAGVYQCTATNGV   84 (147)
Q Consensus        71 ~~~g~y~C~~~~~~   84 (147)
                      .|+|.|.|.+.+..
T Consensus        89 ~D~G~Y~C~~~~~~  102 (225)
T 1op3_H           89 EDTAIYYCARKGSD  102 (225)
T ss_dssp             GGCEEEEEEEECCS
T ss_pred             hhCEEEEEEEecCC
Confidence            99999999998764

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.25  E-value=7.5e-12  Score=81.59  Aligned_cols=77  Identities=22%  Similarity=0.328  Sum_probs=49.6

Q ss_pred             eCCceEEcCCCCceEEee-CCeEEEEEeecCC-C-CCceEEEecCCCCCCCce----e------eeccceEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRK-GGTITLECKASGN-P-VPSIIWSKKDSSLPSGEK----S------LEGFSITLEKVDRHQA   73 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~-g~~~~l~C~~~~~-~-~~~v~w~~~~~~~~~~~~----~------~~~~~l~~~~~~~~~~   73 (147)
                      .+|.+...++... .... |+.+.|.|.+.+. | .+.+.|++++..+.....    .      ...+.|.+......|.
T Consensus         6 ~~P~v~~~~~~~~-~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~   84 (323)
T 2wqr_A            6 TPPTVKILQSSCD-GGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSD   84 (323)
T ss_dssp             CCCCCEEEEECCC-TTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTT
T ss_pred             CCCEEEEeCCChH-HhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCC
Confidence            4677765543321 1122 2699999998775 3 368999999887754321    1      1122456666666789


Q ss_pred             eEEEEEeecCC
Q psy7616          74 GVYQCTATNGV   84 (147)
Q Consensus        74 g~y~C~~~~~~   84 (147)
                      |.|.|.+.+..
T Consensus        85 g~Y~C~a~n~~   95 (323)
T 2wqr_A           85 RTYTCQVTYQG   95 (323)
T ss_dssp             CCEEEEEEETT
T ss_pred             CcEEEEEEeCC
Confidence            99999998754

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.24  E-value=1.1e-10  Score=74.15  Aligned_cols=63  Identities=16%  Similarity=0.423  Sum_probs=46.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEec--CCCC-----------------C-CCceee----eccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKK--DSSL-----------------P-SGEKSL----EGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~-----------------~-~~~~~~----~~~~l~~~~~~~~~~g   74 (147)
                      .+.+..|++++|.|... .+.+.+.|++.  +...                 . ......    ....|.|.+++..|+|
T Consensus        35 ~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G  113 (268)
T 3pl6_D           35 NKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQRTERGDSA  113 (268)
T ss_dssp             EEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEECSCCGGGCE
T ss_pred             EEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEECCCCcccCE
Confidence            56889999999999976 47778999983  2111                 0 111111    1346999999999999


Q ss_pred             EEEEEeec
Q psy7616          75 VYQCTATN   82 (147)
Q Consensus        75 ~y~C~~~~   82 (147)
                      .|.|.+.+
T Consensus       114 ~Y~C~~~~  121 (268)
T 3pl6_D          114 VYLCATSA  121 (268)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEec
Confidence            99999986

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.24  E-value=3.1e-10  Score=71.16  Aligned_cols=65  Identities=25%  Similarity=0.442  Sum_probs=46.9

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecC--CCC------------------CCCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKD--SSL------------------PSGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~--~~~------------------~~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.+.|.|...+.  +.+.+.|++..  ..+                  ...+. ..     ....|.|.+++.
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   89 (242)
T 1hxm_B           10 SSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNVEK   89 (242)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSCCG
T ss_pred             eEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEEEEECCCCc
Confidence            5688999999999998764  55789999853  211                  00111 11     134699999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus        90 ~D~G~Y~C~~~~~  102 (242)
T 1hxm_B           90 QDIATYYCALWEA  102 (242)
T ss_dssp             GGCEEEEEEEEEE
T ss_pred             ccCEEEEEeeecC
Confidence            9999999999764

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.23  E-value=3.4e-10  Score=77.42  Aligned_cols=66  Identities=20%  Similarity=0.358  Sum_probs=47.2

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.+.|.|...+.+  .+.+.|++..  ..+.                  ..+. ..     ....|.|.+++.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   89 (475)
T 1iga_A           10 AEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRP   89 (475)
T ss_pred             cEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEECCCCh
Confidence            56889999999999987654  5679999853  1110                  0011 11     123699999999


Q ss_pred             CCCeEEEEEeecCC
Q psy7616          71 HQAGVYQCTATNGV   84 (147)
Q Consensus        71 ~~~g~y~C~~~~~~   84 (147)
                      .|+|.|.|.+.+..
T Consensus        90 ~D~G~Y~C~~~~~~  103 (475)
T 1iga_A           90 EDTAVYYCARDPYG  103 (475)
T ss_pred             hhCEEEEEEEeccC
Confidence            99999999998754

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.22  E-value=6.5e-11  Score=73.03  Aligned_cols=85  Identities=22%  Similarity=0.370  Sum_probs=66.1

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCce
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV   88 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   88 (147)
                      |.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+...    ....|.|.++...|+|.|.|.+.|..+...
T Consensus       119 p~~~~~~~--~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~  192 (218)
T 3k0w_A          119 LQICVEPT--SQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHE----TKKLYMVPYVDLEHQGTYWCHVYNDRDSQD  192 (218)
T ss_dssp             CEEEECCC--CEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTC----CSSEEEESSCCGGGCEEEEEEEECSSCEEE
T ss_pred             ceEEECCC--ceeecCCCcEEEEEEecccCCCeEEEEECCEECCCC----CCCEEEEeecChhcCEEEEEEEEcCCCCce
Confidence            45555544  457889999999999988899999999998776543    335788999999999999999999777644


Q ss_pred             EEeEEEEEeee
Q psy7616          89 TVDMTLEVLCK   99 (147)
Q Consensus        89 ~~~~~l~v~~~   99 (147)
                      +..+.+.|...
T Consensus       193 s~~~~l~V~~~  203 (218)
T 3k0w_A          193 SKKVEIIIDEL  203 (218)
T ss_dssp             CCCEEEEECC-
T ss_pred             eeeEEEEEeCC
Confidence            56666666543

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.22  E-value=2.1e-11  Score=74.60  Aligned_cols=92  Identities=22%  Similarity=0.380  Sum_probs=64.4

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEee-cCCCCCceEEEecCC--CCCCCce-eeeccceEEEeecCCCCeEEEEE
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDS--SLPSGEK-SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~--~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+..+|.+...+..  ..+..|+.+.|.|.+ .+.|.+.+.|++++.  .+..... ......|.|.++...|+|.|.|.
T Consensus       117 ~V~~~p~~~~~~~~--~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  194 (214)
T 3jz7_A          117 TVLVKPSGTRCFVD--GSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCT  194 (214)
T ss_dssp             EEECCCBSCEEEEE--SCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGGGTTSSEEEECSCCGGGCEEEEEE
T ss_pred             EEEcCCCCceeeee--cceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccceeccCCCEEEEecCCHHHCEEEEEE
Confidence            34455554333221  135689999999998 788899999999543  3322211 22455899999999999999999


Q ss_pred             eecCCCCceEEeEEEEEee
Q psy7616          80 ATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~   98 (147)
                      +.|..+.. +..+.|.|..
T Consensus       195 a~N~~g~~-~~~~~l~V~~  212 (214)
T 3jz7_A          195 VQNRVGSD-QCMLRLDVVP  212 (214)
T ss_dssp             EECSSCEE-EEEEEECCBC
T ss_pred             EEcCCCcE-EEEEEEEEeC
Confidence            99988775 6666666553

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.22  E-value=3.3e-12  Score=86.56  Aligned_cols=79  Identities=11%  Similarity=0.129  Sum_probs=54.3

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCC----CCceEEEecCCCCCCCce----------eeeccceEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP----VPSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~   73 (147)
                      +|.+...++.....+..|+.+.|.|.+.+.+    .+.+.|++++..+.....          ....+.|.|.++...|.
T Consensus       238 ~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~  317 (444)
T 1igt_B          238 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSG  317 (444)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTT
T ss_pred             CceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccC
Confidence            4555444432111147899999999988763    358999999876642211          11234688899999999


Q ss_pred             eEEEEEeecCCCC
Q psy7616          74 GVYQCTATNGVGD   86 (147)
Q Consensus        74 g~y~C~~~~~~~~   86 (147)
                      |.|.|.+.|..+.
T Consensus       318 G~Y~C~a~n~~~~  330 (444)
T 1igt_B          318 KEFKCKVNNKDLP  330 (444)
T ss_dssp             CEEEEEEECTTCS
T ss_pred             CcEEEEEEcCCCC
Confidence            9999999987654

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.21  E-value=9.5e-11  Score=79.43  Aligned_cols=66  Identities=20%  Similarity=0.451  Sum_probs=47.1

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.+.|.|.+.+.+  .+.+.|++..  ..+.                  ..+. ..     ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (444)
T 1igt_B            9 GGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSRLKS   88 (444)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECCCCH
Confidence            34788999999999987754  5679999853  2110                  0111 11     124799999999


Q ss_pred             CCCeEEEEEeecCC
Q psy7616          71 HQAGVYQCTATNGV   84 (147)
Q Consensus        71 ~~~g~y~C~~~~~~   84 (147)
                      .|+|.|.|.+.+..
T Consensus        89 ~D~G~Y~C~~~~~~  102 (444)
T 1igt_B           89 EDTAMYYCARHGGY  102 (444)
T ss_dssp             GGCEEEEEEEECSS
T ss_pred             HHCEEEEEEEecCC
Confidence            99999999998754

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.21  E-value=4.1e-11  Score=72.20  Aligned_cols=81  Identities=15%  Similarity=0.344  Sum_probs=62.9

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEeecCCCCeEEEEE
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+..+|.+...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+....    .......|.|.++...|+|.|.|.
T Consensus        96 ~v~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  173 (191)
T 1epf_A           96 KIFQKLMFKNAPT--PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE  173 (191)
T ss_dssp             EEECCSEEEECCS--SEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEE
T ss_pred             EeecCceEecCCC--cEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEecCCeEEECCCChhhCEEEEEE
Confidence            3445677766665  4578899999999999998999999999987663211    123455799999999999999999


Q ss_pred             eecCCCC
Q psy7616          80 ATNGVGD   86 (147)
Q Consensus        80 ~~~~~~~   86 (147)
                      +.|..+.
T Consensus       174 a~n~~~~  180 (191)
T 1epf_A          174 GRILARG  180 (191)
T ss_dssp             EEEGGGT
T ss_pred             EEEecce
Confidence            9987644

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.21  E-value=1.3e-10  Score=69.37  Aligned_cols=75  Identities=12%  Similarity=0.241  Sum_probs=57.8

Q ss_pred             eEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          20 LTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ..+..|+.+.|.|.+.+.+.+ .+.|++++..+..   ......|.|.+++..|+|.|.|.+.|..+...+..+.|.|.
T Consensus        98 ~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~  173 (175)
T 1fnl_A           98 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY---FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT  173 (175)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE---EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             ceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC---CCCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEEe
Confidence            368899999999998876554 8999999876521   23467899999999999999999999755434455556554

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.20  E-value=3.7e-11  Score=81.26  Aligned_cols=65  Identities=25%  Similarity=0.475  Sum_probs=46.6

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC------------------CCcee-e-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP------------------SGEKS-L-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~------------------~~~~~-~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.+.|.|.+.+.+  .+.+.|+++.  ..+.                  ..+.. .     ....|.|.+++.
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   87 (434)
T 1igy_B            8 AELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLSSLTS   87 (434)
T ss_dssp             CCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEECSBCG
T ss_pred             CeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEECCCCh
Confidence            45788999999999988754  5679999863  1110                  00111 1     123799999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus        88 ~D~G~Y~C~~~~~  100 (434)
T 1igy_B           88 DDSAVYYCVREGE  100 (434)
T ss_dssp             GGCSEECCCCSSS
T ss_pred             HHCEEEEEEEEcc
Confidence            9999999999764

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.20  E-value=2.8e-10  Score=77.84  Aligned_cols=63  Identities=17%  Similarity=0.375  Sum_probs=44.1

Q ss_pred             eeCCeEEEEEeecCC-CC-C-ceEEEecCCCCCCCc----------eeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          23 RKGGTITLECKASGN-PV-P-SIIWSKKDSSLPSGE----------KSLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~-~~-~-~v~w~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      ..|+.+.|.|.+.+. |. + .+.|++++.......          .....+.|.|......|.|.|.|.+.+..+
T Consensus       139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~  214 (475)
T 1iga_A          139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTN  214 (475)
T ss_pred             CCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCC
Confidence            579999999999886 54 4 899998875321100          011123467777777889999999988654

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.20  E-value=1.8e-10  Score=72.11  Aligned_cols=63  Identities=17%  Similarity=0.298  Sum_probs=45.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CC-----------------CC-CCceee----eccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SS-----------------LP-SGEKSL----EGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~-----------------~~-~~~~~~----~~~~l~~~~~~~~~~g   74 (147)
                      .+.+..|+.++|.| ..+.+.+.+.|++..  ..                 +. ......    ....|.|.+++..|+|
T Consensus        11 ~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   89 (245)
T 4ei6_B           11 HQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQPTALEDSA   89 (245)
T ss_dssp             EEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEECSCCGGGCE
T ss_pred             eEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEECCCCHhHCE
Confidence            56888999999999 556678899999821  00                 00 111111    1237999999999999


Q ss_pred             EEEEEeec
Q psy7616          75 VYQCTATN   82 (147)
Q Consensus        75 ~y~C~~~~   82 (147)
                      .|.|.+.+
T Consensus        90 ~Y~C~~~~   97 (245)
T 4ei6_B           90 VYFCASSF   97 (245)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEcc
Confidence            99999984

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.20  E-value=9e-11  Score=70.05  Aligned_cols=78  Identities=21%  Similarity=0.276  Sum_probs=60.2

Q ss_pred             EEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEeee
Q psy7616          21 TVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK   99 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~   99 (147)
                      .+..|+.+.|.|.+. +.+.+.+.|++++..+..   ......|.|.++...|+|.|.|.+.|..+...+..+.+.|..+
T Consensus        96 ~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~  172 (176)
T 1f2q_A           96 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKY---WYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA  172 (176)
T ss_dssp             EEETTSCEEEEEEEGGGCCEEEEEEEETTEECCS---CCCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred             eeeCCCCEEEEEEecCCCCceEEEEEECCEEEee---ecCCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecC
Confidence            778999999999984 556678999999876632   1245678999999999999999999864443355567777766


Q ss_pred             ec
Q psy7616         100 IL  101 (147)
Q Consensus       100 ~~  101 (147)
                      |.
T Consensus       173 p~  174 (176)
T 1f2q_A          173 PR  174 (176)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.20  E-value=3.8e-11  Score=74.63  Aligned_cols=66  Identities=17%  Similarity=0.324  Sum_probs=47.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCC----CceEEEecC--CCCC-----------------CCce-ee-----eccceEEEeec
Q psy7616          19 QLTVRKGGTITLECKASGNPV----PSIIWSKKD--SSLP-----------------SGEK-SL-----EGFSITLEKVD   69 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~----~~v~w~~~~--~~~~-----------------~~~~-~~-----~~~~l~~~~~~   69 (147)
                      .+.+..|+.++|.|.+.+.+.    +.+.|++..  ..+.                 ..+. ..     ....|.|.+++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~   88 (228)
T 3bae_H            9 PGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITSVD   88 (228)
T ss_dssp             CSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECSCC
T ss_pred             ceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcCCC
Confidence            347889999999999987664    789999853  2110                 0111 11     12479999999


Q ss_pred             CCCCeEEEEEeecCC
Q psy7616          70 RHQAGVYQCTATNGV   84 (147)
Q Consensus        70 ~~~~g~y~C~~~~~~   84 (147)
                      ..|+|.|.|.+.+..
T Consensus        89 ~~D~G~Y~C~~~~~~  103 (228)
T 3bae_H           89 TADTATYYCARRGFY  103 (228)
T ss_dssp             GGGCEEEEEEEEEES
T ss_pred             cccCEEEEEEEecCC
Confidence            999999999997743

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.20  E-value=1.1e-09  Score=67.56  Aligned_cols=65  Identities=18%  Similarity=0.365  Sum_probs=45.0

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCCCCC-----------------------CCceee-----eccceEEEee
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDSSLP-----------------------SGEKSL-----EGFSITLEKV   68 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~~~~-----------------------~~~~~~-----~~~~l~~~~~   68 (147)
                      .+.+..|+.++|.|...+.+  .+.+.|++......                       ......     ....|.|.++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   88 (221)
T 3m8o_H            9 GGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQMNSL   88 (221)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEECSC
T ss_pred             CEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEECCC
Confidence            35788999999999987643  56799997432100                       000011     1125999999


Q ss_pred             cCCCCeEEEEEeecC
Q psy7616          69 DRHQAGVYQCTATNG   83 (147)
Q Consensus        69 ~~~~~g~y~C~~~~~   83 (147)
                      +..|+|.|.|.+.+.
T Consensus        89 ~~~DsG~Y~C~~~~~  103 (221)
T 3m8o_H           89 KSDDTAMYYCVIRGD  103 (221)
T ss_dssp             CGGGCEEEEEEEESC
T ss_pred             CHHHCEEEEEEEECC
Confidence            999999999999764

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.20  E-value=3.3e-12  Score=80.14  Aligned_cols=78  Identities=13%  Similarity=0.185  Sum_probs=52.5

Q ss_pred             CCceEEcCCCCceE-EeeCCeEEEEEeecCC---CCC-ceEEEecCCCCCCCc----------eeeeccceEEEeecCCC
Q psy7616           8 PPSIRTSPSNGQLT-VRKGGTITLECKASGN---PVP-SIIWSKKDSSLPSGE----------KSLEGFSITLEKVDRHQ   72 (147)
Q Consensus         8 ~p~~~~~~~~~~~~-~~~g~~~~l~C~~~~~---~~~-~v~w~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~   72 (147)
                      +|.+...++. ... +..|+.+.|.|.+.+.   |.+ .+.|++++..+....          .......|.|.+++..|
T Consensus        15 ~P~v~~~pp~-~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D   93 (239)
T 1i1c_A           15 VSSVFIFPPK-TKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLN   93 (239)
T ss_dssp             --CEEEECCC-HHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHT
T ss_pred             CCEEEEECCC-hHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccC
Confidence            4555554443 112 5689999999998775   555 799999886543211          11223468888888899


Q ss_pred             CeEEEEEeecCCCC
Q psy7616          73 AGVYQCTATNGVGD   86 (147)
Q Consensus        73 ~g~y~C~~~~~~~~   86 (147)
                      .|.|.|.+.+..+.
T Consensus        94 ~g~Y~C~~~~~~~~  107 (239)
T 1i1c_A           94 GKTFKCKVNSGAFP  107 (239)
T ss_dssp             TCCEEEEEECSSSS
T ss_pred             CCeEEEEEecccCC
Confidence            99999999886553

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.20  E-value=6.4e-11  Score=72.30  Aligned_cols=80  Identities=23%  Similarity=0.391  Sum_probs=61.3

Q ss_pred             EeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee---eeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEee
Q psy7616          22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~   98 (147)
                      +..|+.+.|.|.+.+.+ +.+.|++++..+......   ..+..|.|.++...|+|.|.|.+.|..+...+.++.+.+..
T Consensus       122 ~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~  200 (208)
T 3r4d_A          122 VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF  200 (208)
T ss_dssp             CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEETTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-
T ss_pred             EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEcCCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEe
Confidence            67899999999998855 799999998877543221   13367999999999999999999999988767788887766


Q ss_pred             eecC
Q psy7616          99 KILP  102 (147)
Q Consensus        99 ~~~~  102 (147)
                      ++..
T Consensus       201 ~~~~  204 (208)
T 3r4d_A          201 DPHH  204 (208)
T ss_dssp             ----
T ss_pred             CCcc
Confidence            6543

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.19  E-value=7.6e-11  Score=74.44  Aligned_cols=65  Identities=18%  Similarity=0.383  Sum_probs=44.8

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCCCCC---------------------CCceee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDSSLP---------------------SGEKSL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~~~~---------------------~~~~~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|...+.  ....+.|++......                     ......     ....|.|.+++.
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (253)
T 3liz_H            9 GGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSSLKS   88 (253)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECCCCh
Confidence            3478899999999998663  356799998431100                     001111     122499999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus        89 ~DsG~Y~C~~~~~  101 (253)
T 3liz_H           89 EDTAMYYCTRDPA  101 (253)
T ss_dssp             GGCEEEEEEECCB
T ss_pred             hhCEEEEEEEecC
Confidence            9999999998764

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.19  E-value=3.1e-11  Score=62.98  Aligned_cols=58  Identities=19%  Similarity=0.450  Sum_probs=48.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEee-cCCCCeEEEEEeec
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKV-DRHQAGVYQCTATN   82 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~g~y~C~~~~   82 (147)
                      ...+..|+.++|.|.+.+.|.  +.|++++..++..    .+..|.|.++ ...|+|.|.|.+..
T Consensus         8 ~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~----~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            8 YKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK----HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CEEEEETTEEEEECSSCCCSS--CEEEETTEECTTC----CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             eeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC----CCCEEEECccCccCcCEEEEEEEcc
Confidence            457788999999999988763  9999999887643    4567889995 78999999999865

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.19  E-value=2.5e-10  Score=63.29  Aligned_cols=77  Identities=14%  Similarity=0.128  Sum_probs=55.0

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCC---------------------CCceeeeccceEEEeecCCCCeEEEEE
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLP---------------------SGEKSLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~---------------------~~~~~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+..|+++.|.|...+.....+.|+++.....                     .......+++|.|.+++..|+|.|+|.
T Consensus        11 ~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ngSL~I~nvt~~D~G~Ytc~   90 (111)
T 2qsq_A           11 NVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDAGFYTLH   90 (111)
T ss_dssp             EEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTSCEEECSCCGGGCEEEEEE
T ss_pred             eeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCCcEEEccCcccCCeEEEEE
Confidence            68899999999985433445699999764221                     111223567899999999999999999


Q ss_pred             eecCCCCceEEeEEEEEe
Q psy7616          80 ATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~   97 (147)
                      +.+..+........|.|.
T Consensus        91 v~~~~~~~~~~~~~L~V~  108 (111)
T 2qsq_A           91 VIKSDLVNEEATGQFRVY  108 (111)
T ss_dssp             EEETTSCCEEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEEEEe
Confidence            998765433556666554

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.19  E-value=2.8e-10  Score=68.19  Aligned_cols=92  Identities=25%  Similarity=0.438  Sum_probs=66.7

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCC-CCceEEEe---cCCC-CCCC---ce-ee---eccceEEEeec-
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSK---KDSS-LPSG---EK-SL---EGFSITLEKVD-   69 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~w~~---~~~~-~~~~---~~-~~---~~~~l~~~~~~-   69 (147)
                      ..+..+|.+...+.  ...+..|+.+.|.|.+.+.| .+.+.|++   ++.. +...   .. ..   ....|.|.++. 
T Consensus        78 l~V~~~P~~~~~~~--~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~  155 (184)
T 3b5h_A           78 IQLHGPPRVKAVKS--SEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNM  155 (184)
T ss_dssp             EEECCSCCCEESCS--EEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCT
T ss_pred             EEEecCCceeecCC--CcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeeccc
Confidence            34557888877764  45788999999999999988 78999999   3432 2211   11 11   12379999999 


Q ss_pred             CCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          70 RHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        70 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ..|+|.|.|.+.|..|.. ...+.|.|.
T Consensus       156 ~~d~G~Y~C~a~N~~g~~-~~~~~l~V~  182 (184)
T 3b5h_A          156 EADPGQYRCNGTSSKGSD-QAIITLRVR  182 (184)
T ss_dssp             TTSSEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             cccCceEEEEEEeCCCcc-eEEEEEEEe
Confidence            899999999999988774 555666553

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.19  E-value=1.2e-10  Score=69.87  Aligned_cols=76  Identities=16%  Similarity=0.291  Sum_probs=61.5

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEeee
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK   99 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~   99 (147)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+     ......|.|.++...|+|.|.|.+.+..+. .+..+.+.|...
T Consensus       107 ~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~-~~~~~~l~V~~~  180 (184)
T 2ny1_B          107 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-----IQGGKTLSVSQLELQDSGTWTCTVLQNQKK-VEFKIDIVVLAF  180 (184)
T ss_dssp             SEEETTCCEEEEEECCTTCCCEEEEECTTSCE-----EEESSEEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC
T ss_pred             ceeecCCCEEEEEEcCCCCCCEEEEEeCCCcc-----ccCceEEEEecCCcCCCeEEEEEEEECCce-EEEEEEEEEEec
Confidence            37889999999999988899999999987543     335678999999999999999999986655 366777777665


Q ss_pred             ec
Q psy7616         100 IL  101 (147)
Q Consensus       100 ~~  101 (147)
                      |.
T Consensus       181 p~  182 (184)
T 2ny1_B          181 QK  182 (184)
T ss_dssp             CC
T ss_pred             CC
Confidence            54

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.19  E-value=1.1e-10  Score=71.45  Aligned_cols=91  Identities=11%  Similarity=0.192  Sum_probs=64.8

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecCC-CCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+..+|.+...+.   ..+..|+.+.|.|.+.+. +.+.+.|++++..+..   ......|.|.+++..|+|.|.|.+.|
T Consensus        85 ~V~~~p~~~~~~~---~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~n  158 (204)
T 3sgj_C           85 EVHIGWLLLQAPR---WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKY---FHHNSDFYIPKATLKDSGSYFCRGLV  158 (204)
T ss_dssp             EEECSSEEEECSC---SEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEE---EEECCCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEecCceEecCCc---eeEeCCCcEEEEEEecCCCCCceEEEEECCcEeec---ccCCceEEECcCCcccCEEEEEEEEe
Confidence            3445555544443   378899999999998654 5578999999876421   23456899999999999999999999


Q ss_pred             CCCCceEEeEEEEEeeee
Q psy7616          83 GVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~  100 (147)
                      ..+...+..+.+.|..++
T Consensus       159 ~~~~~~s~~~~l~V~~~~  176 (204)
T 3sgj_C          159 GSKNVSSETVQITITQGL  176 (204)
T ss_dssp             TTEEEECCCEEEEEEC--
T ss_pred             CCCceecCcEEEEEeCcC
Confidence            544434566677776544

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.19  E-value=2.7e-11  Score=74.23  Aligned_cols=83  Identities=12%  Similarity=0.166  Sum_probs=56.6

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC----c--eeeeccc---eEEEeecCCCC
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG----E--KSLEGFS---ITLEKVDRHQA   73 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~----~--~~~~~~~---l~~~~~~~~~~   73 (147)
                      +.+..||.+...+.  ...+..|+.+.|.|.+.|.|.|.+.|+++++.+...    .  .....+.   +.+.++...|+
T Consensus       101 l~V~~p~~~~~~~~--~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~~~~g~l~il~i~~v~~~D~  178 (203)
T 4fa8_A          101 LSVVKPLTLSVHSE--RSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWH  178 (203)
T ss_dssp             EEEEEEEEEEEEEE--ECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEECTTSCEEEEEEEEECSSCC
T ss_pred             EEecCCceeeecce--eEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEEeCCCCEEEEEECCCCHHHC
Confidence            34555666665554  336678999999999999999999999876554311    1  1122333   44568899999


Q ss_pred             eEEEEEeecCCCCc
Q psy7616          74 GVYQCTATNGVGDP   87 (147)
Q Consensus        74 g~y~C~~~~~~~~~   87 (147)
                      |.|+|.+.|..|..
T Consensus       179 G~YtC~A~N~~G~a  192 (203)
T 4fa8_A          179 LPVTCVGKNDKEEA  192 (203)
T ss_dssp             CCEEEEEESSSCEE
T ss_pred             EEEEEEEEcCCCEE
Confidence            99999999998874

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.19  E-value=2.3e-10  Score=71.34  Aligned_cols=85  Identities=24%  Similarity=0.355  Sum_probs=61.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEe----cCCCCCCCce-------------eeeccceEEEeecCCCCeEEEEEee
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSK----KDSSLPSGEK-------------SLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~----~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      ...+..|+.+.|.|.+.+.|.+.+.|++    ++..+.....             ......|.|.++...|+|.|.|.+.
T Consensus       123 ~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  202 (241)
T 3grw_A          123 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRAT  202 (241)
T ss_dssp             SEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEe
Confidence            4577889999999999998999999999    6665532211             1134568999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeeecCCC
Q psy7616          82 NGVGDPVTVDMTLEVLCKILPSG  104 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~~  104 (147)
                      |..+.. +..+.|.|..+|.++.
T Consensus       203 N~~g~~-~~~~~l~V~~~p~~~~  224 (241)
T 3grw_A          203 NFIGVA-EKAFWLSVHGPRAAEE  224 (241)
T ss_dssp             CSSCEE-EEEEEEEC--------
T ss_pred             cCcceE-EEEEEEEecCCCCCCc
Confidence            988775 7778888877766543

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=6e-11  Score=64.69  Aligned_cols=76  Identities=21%  Similarity=0.433  Sum_probs=56.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--e-e--ccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--L-E--GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~-~--~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      .+.+..|+.+.|.|.+. .+.+.+.|++++..+......  . .  ...|.|.++...|+|.|.|.+.+.     ...+.
T Consensus        20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~-----~~~~~   93 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAGGQ-----QLSFR   93 (102)
T ss_dssp             EEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEETTE-----ECCEE
T ss_pred             cEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcCCC-----cEEEE
Confidence            45788999999999987 688899999999877543221  1 1  247999999999999999998542     34455


Q ss_pred             EEEeeee
Q psy7616          94 LEVLCKI  100 (147)
Q Consensus        94 l~v~~~~  100 (147)
                      +.|..+|
T Consensus        94 l~V~~p~  100 (102)
T 2eo1_A           94 LQVAGQC  100 (102)
T ss_dssp             EEEESCC
T ss_pred             EEEeCCC
Confidence            6665543

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.18  E-value=8.4e-11  Score=80.01  Aligned_cols=66  Identities=17%  Similarity=0.330  Sum_probs=47.4

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.+.|.|...+.+  .+.+.|++..  ....                  ..+. ..     ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~   88 (457)
T 1hzh_H            9 AEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRS   88 (457)
T ss_dssp             CEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             ceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECCCCc
Confidence            45788999999999988765  6679999842  2110                  0111 11     123699999999


Q ss_pred             CCCeEEEEEeecCC
Q psy7616          71 HQAGVYQCTATNGV   84 (147)
Q Consensus        71 ~~~g~y~C~~~~~~   84 (147)
                      .|+|.|.|.+.+..
T Consensus        89 ~D~G~Y~C~~~~~~  102 (457)
T 1hzh_H           89 ADTAVYYCARVGPY  102 (457)
T ss_dssp             GGCEEEEEEECCCC
T ss_pred             ccCEEEEEEEecCC
Confidence            99999999998764

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.18  E-value=6.1e-10  Score=68.98  Aligned_cols=66  Identities=20%  Similarity=0.368  Sum_probs=46.8

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCC--CCC------------------CCce-eee-----ccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDS--SLP------------------SGEK-SLE-----GFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~--~~~------------------~~~~-~~~-----~~~l~~~~~~~   70 (147)
                      .+.+..|+.+.|.|.+.+.+  .+.+.|++...  ...                  ..+. ...     ...|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (223)
T 1dee_B            9 GGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSLRA   88 (223)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCCCH
Confidence            45788999999999987654  46799998531  110                  0111 111     23699999999


Q ss_pred             CCCeEEEEEeecCC
Q psy7616          71 HQAGVYQCTATNGV   84 (147)
Q Consensus        71 ~~~g~y~C~~~~~~   84 (147)
                      .|+|.|.|.+.+..
T Consensus        89 ~D~G~Y~C~~~~~~  102 (223)
T 1dee_B           89 EDTAVYYCAKVKFY  102 (223)
T ss_dssp             GGCEEEEEEEESSS
T ss_pred             HHCEEEEEEEeccc
Confidence            99999999998753

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.16  E-value=4.5e-11  Score=72.87  Aligned_cols=82  Identities=27%  Similarity=0.534  Sum_probs=62.5

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCCce------------eeeccceEEEeecC
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK------------SLEGFSITLEKVDR   70 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~------------~~~~~~l~~~~~~~   70 (147)
                      .+..+|.+...+..  ..+..|+.+.|.|.+ .+.|.+.+.|++++..+.....            ......|.|.++..
T Consensus       103 ~V~~~p~~~~~~~~--~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~  180 (209)
T 1nbq_A          103 IVLVPPSKPTVNIP--SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSA  180 (209)
T ss_dssp             CEEBCCCCCCCCCB--SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCG
T ss_pred             EEecCCcCCCcccc--cceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccccceeeeccceEEcCCcceEEEEeccc
Confidence            34456665544442  368899999999996 7888899999999887754221            11456799999999


Q ss_pred             CCCeEEEEEeecCCCCc
Q psy7616          71 HQAGVYQCTATNGVGDP   87 (147)
Q Consensus        71 ~~~g~y~C~~~~~~~~~   87 (147)
                      .|.|.|.|.+.|..+..
T Consensus       181 ~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          181 SDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             GGCCCEEEEEECSSSCC
T ss_pred             cCCeEEEEEEeCCcCcc
Confidence            99999999999988775

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.15  E-value=9.8e-10  Score=78.87  Aligned_cols=127  Identities=19%  Similarity=0.211  Sum_probs=87.2

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceE-EE--ecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSII-WS--KKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~-w~--~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      +|.+. .+.  ...+..|+.+.|.|.+.+.|.+.+. |.  +++..+......     .....|.|.++...|.|.|.|.
T Consensus       165 ~p~~~-~~~--~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~  241 (731)
T 2v5y_A          165 TPHFL-RIQ--NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM  241 (731)
T ss_dssp             SCEEC-CCC--CEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEE
T ss_pred             ccccc-ccc--ceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEE
Confidence            45554 333  6789999999999999999999988 77  566554322111     1235799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeeeecCCCCcc-------------------------------------------ccCCceEEe
Q psy7616          80 ATNGVGDPVTVDMTLEVLCKILPSGEKS-------------------------------------------LEGFSITLE  116 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~~~~~~~~~-------------------------------------------~~~~~~~l~  116 (147)
                      +.|..|...+..+.+.+..+|.++..+.                                           .....+.+.
T Consensus       242 A~n~~G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~g~~~i~~Y~v~~~~~~~~~~~~~~~~~~~~~i~  321 (731)
T 2v5y_A          242 IRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIG  321 (731)
T ss_dssp             EEETTEEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBSSCSCCCEEEEEEEESSSSCEEEEECCSSEEEEC
T ss_pred             EECCCCCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccCCCCccEEEEEEEEECCCCceEEeccCcceEEEe
Confidence            9998876334555666665544321111                                           011234456


Q ss_pred             ecCCCCCeEEEEEee--cCCCCC
Q psy7616         117 KVDRHQAGVYQCTAT--NGVGDP  137 (147)
Q Consensus       117 ~~~~~d~G~Y~C~a~--n~~g~~  137 (147)
                      ++...+...|+|.|.  |..|..
T Consensus       322 ~L~p~t~Y~~~V~A~~~N~~G~s  344 (731)
T 2v5y_A          322 HLDPDTEYEISVLLTRPGEGGTG  344 (731)
T ss_dssp             SCCTTCEEEEEEEEECSSTTCSC
T ss_pred             CCCCCCEEEEEEEEEecCCCccc
Confidence            777778888899999  998876

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.15  E-value=2e-11  Score=82.50  Aligned_cols=76  Identities=20%  Similarity=0.375  Sum_probs=51.0

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC-ceEEEecCCCCCCC--------ceeeeccceEEEeecCCCCeEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP-SIIWSKKDSSLPSG--------EKSLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      +|.+...++..  .+..|+.+.|.|.+.+. |.+ .+.|++++......        ......+.|.|.++...| |.|.
T Consensus       119 ~P~i~~~~~~~--~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~  195 (434)
T 1igy_B          119 PPSVYPLAPGS--AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVT  195 (434)
T ss_dssp             CCCEEEECCCC--CCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCE
T ss_pred             CCeEEEcCCcc--ccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEE
Confidence            45554433322  34689999999998875 665 89999988653210        011122457888888788 9999


Q ss_pred             EEeecCCCC
Q psy7616          78 CTATNGVGD   86 (147)
Q Consensus        78 C~~~~~~~~   86 (147)
                      |.+.+..+.
T Consensus       196 C~a~n~~~~  204 (434)
T 1igy_B          196 CNVAHPASS  204 (434)
T ss_dssp             EEEECTTTT
T ss_pred             EEEEeCCCC
Confidence            999987654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.15  E-value=6.2e-11  Score=71.77  Aligned_cols=78  Identities=24%  Similarity=0.407  Sum_probs=60.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEe-ecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEK-VDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~-~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      ...+..|+.+.|.|.+.+.|.+.+.|++++..+......     .....|.|.+ +...|+|.|.|.+.|..+.. +..+
T Consensus       113 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~-~~~~  191 (197)
T 2j8h_A          113 AVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTV  191 (197)
T ss_dssp             EEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEE-EEEE
T ss_pred             eEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcE-eEEE
Confidence            346778999999999998899999999998776533221     1335788888 99999999999999988764 6666


Q ss_pred             EEEEe
Q psy7616          93 TLEVL   97 (147)
Q Consensus        93 ~l~v~   97 (147)
                      .|.|.
T Consensus       192 ~l~V~  196 (197)
T 2j8h_A          192 ELDVA  196 (197)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66553

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.14  E-value=1.8e-10  Score=69.54  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=60.9

Q ss_pred             CceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee--e---eccceEEEeecC-CCCeEEEEEeecCCCCceEEe
Q psy7616          18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS--L---EGFSITLEKVDR-HQAGVYQCTATNGVGDPVTVD   91 (147)
Q Consensus        18 ~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~--~---~~~~l~~~~~~~-~~~g~y~C~~~~~~~~~~~~~   91 (147)
                      ....+..|+.+.|.|.+.+.|.+.+.|++++..+......  .   ....|.|.++.. .|+|.|.|.+.|..+.. +..
T Consensus       111 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~-~~~  189 (197)
T 3lcy_A          111 EKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTV-DAI  189 (197)
T ss_dssp             SEEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEE-EEE
T ss_pred             cceeecCCCeEEEEEEEeeeeCCeeEEeECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCce-EEE
Confidence            3457788999999999989899999999998877543321  1   125688888885 79999999999988774 666


Q ss_pred             EEEEEe
Q psy7616          92 MTLEVL   97 (147)
Q Consensus        92 ~~l~v~   97 (147)
                      +.+.|.
T Consensus       190 ~~l~V~  195 (197)
T 3lcy_A          190 LDVEIQ  195 (197)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            666554

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.14  E-value=1.2e-09  Score=66.26  Aligned_cols=65  Identities=18%  Similarity=0.258  Sum_probs=47.8

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce----ee---eccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SL---EGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~----~~---~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      ..+..|+.+.|.|.+.+. .+.+.|++++..+.....    ..   ....|.|.+++..|+|.|.|.+.|..+
T Consensus       110 ~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  181 (198)
T 1ugn_A          110 PVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNS  181 (198)
T ss_dssp             SEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTS
T ss_pred             cccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCC
Confidence            378899999999999886 779999999887632211    11   236799999999999999999998754

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.14  E-value=1.4e-11  Score=75.51  Aligned_cols=78  Identities=14%  Similarity=0.178  Sum_probs=46.8

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCC----CCceEEEecCCCCCCCc----eeeeccceEEE------eecCCCCe
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNP----VPSIIWSKKDSSLPSGE----KSLEGFSITLE------KVDRHQAG   74 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~~~~~~~~~----~~~~~~~l~~~------~~~~~~~g   74 (147)
                      |.+...++.....+..|+.+.|.|.+.+.+    ...+.|++++..+....    .....+.+.+.      .....|.|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g   81 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence            555555543211126899999999987754    24899999986553221    11112233332      22233489


Q ss_pred             EEEEEeecCCCC
Q psy7616          75 VYQCTATNGVGD   86 (147)
Q Consensus        75 ~y~C~~~~~~~~   86 (147)
                      .|.|.+.+..+.
T Consensus        82 ~Y~C~a~n~~~~   93 (207)
T 1l6x_A           82 EYKCKVSNKALP   93 (207)
T ss_dssp             CEEEEEECTTSS
T ss_pred             eEEEEEEcCcCC
Confidence            999999986554

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.13  E-value=5.3e-10  Score=69.10  Aligned_cols=85  Identities=26%  Similarity=0.387  Sum_probs=63.7

Q ss_pred             CceEEeeCCeEEEEEeecCCCCCceEEEe----cCCCCCCCce------------eeeccceEEEeecCCCCeEEEEEee
Q psy7616          18 GQLTVRKGGTITLECKASGNPVPSIIWSK----KDSSLPSGEK------------SLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus        18 ~~~~~~~g~~~~l~C~~~~~~~~~v~w~~----~~~~~~~~~~------------~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      ....+..|+.+.|.|.+.+.|.+.+.|++    ++..+.....            ......|.|.++...|+|.|.|.+.
T Consensus       126 ~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  205 (231)
T 3ojm_B          126 ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVS  205 (231)
T ss_dssp             CCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEE
T ss_pred             CceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEE
Confidence            35688899999999999998999999999    5554432111            1123469999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeeecCC
Q psy7616          82 NGVGDPVTVDMTLEVLCKILPS  103 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~~~  103 (147)
                      |..+.. +..+.+.|..+|..+
T Consensus       206 n~~g~~-~~~~~l~V~~~p~~p  226 (231)
T 3ojm_B          206 NYIGQA-NQSAWLTVLPKQQAP  226 (231)
T ss_dssp             ETTEEE-EEEEEEEEECCC---
T ss_pred             eccceE-eeEEEEEEecCCCCC
Confidence            988775 777778887666543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.12  E-value=3.6e-10  Score=71.86  Aligned_cols=63  Identities=13%  Similarity=0.330  Sum_probs=45.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCC-------C------------ce-e----eeccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS-------G------------EK-S----LEGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~-------~------------~~-~----~~~~~l~~~~~~~~~~g   74 (147)
                      .+.+..|+.++|.|...+ +.+.+.|++.......       .            .. .    .....|.|.+++..|+|
T Consensus        36 ~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G  114 (270)
T 3qib_D           36 YLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSA  114 (270)
T ss_dssp             EEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCE
T ss_pred             eEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCe
Confidence            568899999999999865 6778999983211000       0            00 0    11346999999999999


Q ss_pred             EEEEEeec
Q psy7616          75 VYQCTATN   82 (147)
Q Consensus        75 ~y~C~~~~   82 (147)
                      .|.|.+.+
T Consensus       115 ~Y~C~~~~  122 (270)
T 3qib_D          115 LYLCASSL  122 (270)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEec
Confidence            99999985

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.12  E-value=1.1e-09  Score=68.34  Aligned_cols=63  Identities=21%  Similarity=0.372  Sum_probs=44.9

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC-----------------CCce-ee-----eccceEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP-----------------SGEK-SL-----EGFSITLEKVDRH   71 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~-----------------~~~~-~~-----~~~~l~~~~~~~~   71 (147)
                      .+.+..|+.++|.|...+.+  .+.+.|++..  ....                 ..+. ..     ....|.|.+++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (232)
T 1dn0_B            9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAA   88 (232)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCCCcc
Confidence            34788999999999987654  5679999853  1110                 0111 11     1227999999999


Q ss_pred             CCeEEEEEee
Q psy7616          72 QAGVYQCTAT   81 (147)
Q Consensus        72 ~~g~y~C~~~   81 (147)
                      |+|.|.|.+.
T Consensus        89 D~G~Y~C~~~   98 (232)
T 1dn0_B           89 DTAVYYCARP   98 (232)
T ss_dssp             GCEEEEEEEC
T ss_pred             cCEEEEEEEe
Confidence            9999999997

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.12  E-value=2.4e-10  Score=71.54  Aligned_cols=69  Identities=17%  Similarity=0.365  Sum_probs=54.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc------------------------ee--eeccceEEEeecCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE------------------------KS--LEGFSITLEKVDRHQ   72 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~------------------------~~--~~~~~l~~~~~~~~~   72 (147)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+....                        ..  .....|.|.++...|
T Consensus       145 ~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D  224 (250)
T 2fbo_J          145 VVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITD  224 (250)
T ss_dssp             EEECCTTCCEEECCCEESCTTCEEEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGG
T ss_pred             eEEecCCCcEEEEEEecCCCCCeeEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCccc
Confidence            4556679999999999998888999999987654311                        01  133679999999999


Q ss_pred             CeEEEEEeecCCCCc
Q psy7616          73 AGVYQCTATNGVGDP   87 (147)
Q Consensus        73 ~g~y~C~~~~~~~~~   87 (147)
                      +|.|.|.+.|..|..
T Consensus       225 ~G~Y~C~a~N~~g~~  239 (250)
T 2fbo_J          225 AGRVWCELATGQGEL  239 (250)
T ss_dssp             CEEEEEEEESSSSGG
T ss_pred             CEEEEEEecCCcccc
Confidence            999999999976654

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.11  E-value=6.8e-10  Score=68.37  Aligned_cols=65  Identities=20%  Similarity=0.450  Sum_probs=46.4

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC-----------------CCce-ee-----eccceEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP-----------------SGEK-SL-----EGFSITLEKVDRH   71 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~-----------------~~~~-~~-----~~~~l~~~~~~~~   71 (147)
                      .+.+..|+.+.|.|.+.+.+  .+.+.|++..  ....                 ..+. ..     ....|.|.+++..
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   88 (215)
T 1c5d_H            9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTE   88 (215)
T ss_dssp             CCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSCCGG
T ss_pred             CeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCCCcc
Confidence            34788999999999987654  4679999863  2110                 0111 11     1237999999999


Q ss_pred             CCeEEEEEeecC
Q psy7616          72 QAGVYQCTATNG   83 (147)
Q Consensus        72 ~~g~y~C~~~~~   83 (147)
                      |+|.|.|.+.+.
T Consensus        89 D~G~Y~C~~~~~  100 (215)
T 1c5d_H           89 DTAIYFCTREDG  100 (215)
T ss_dssp             GCEEEEEEECCS
T ss_pred             cCEEEEEEEecC
Confidence            999999999875

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.10  E-value=5.5e-10  Score=75.82  Aligned_cols=90  Identities=26%  Similarity=0.490  Sum_probs=65.4

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC------ceeeeccceEEEeecCCCCeEEEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG------EKSLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~------~~~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +|.+...+.  ...+..|+.+++.|.+ +.|.+.+.|+++++.....      ........|.|.+++..|+|.|.|.+.
T Consensus       341 ~P~i~~~~~--~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  417 (440)
T 3zyj_A          341 APVIVEPPA--DLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDGTLNFTNVTVQDTGMYTCMVS  417 (440)
T ss_dssp             CCCEEECCC--CEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTCCEEESSCCSTTCEEEEEEEE
T ss_pred             CCccccccc--ceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCCeEEEccCChhhCEEEEEEEE
Confidence            455555444  5688999999999999 5588899999966543211      112345679999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeeec
Q psy7616          82 NGVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~  101 (147)
                      |..|.. +..+.+.+..+|.
T Consensus       418 N~~G~~-~~~~~~~v~~~~~  436 (440)
T 3zyj_A          418 NSVGNT-TASATLNVTGTHH  436 (440)
T ss_dssp             CSSCEE-EEEEEEEEC----
T ss_pred             cCCCcE-EEEEEEEEecccc
Confidence            998875 7777777766554

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.09  E-value=9.7e-10  Score=69.66  Aligned_cols=66  Identities=21%  Similarity=0.420  Sum_probs=47.1

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCC--CCC------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDS--SLP------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~--~~~------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|...+.+  .+.+.|++...  .+.                  ..+. ..     ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (257)
T 3bn9_D            9 GGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSSLRA   88 (257)
T ss_dssp             CEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEESCCG
T ss_pred             CEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECCCCh
Confidence            34788999999999987754  56799998541  110                  0011 11     123699999999


Q ss_pred             CCCeEEEEEeecCC
Q psy7616          71 HQAGVYQCTATNGV   84 (147)
Q Consensus        71 ~~~g~y~C~~~~~~   84 (147)
                      .|+|.|.|.+.+..
T Consensus        89 ~DsG~Y~C~~~~~~  102 (257)
T 3bn9_D           89 EDTAVYYCARPYLT  102 (257)
T ss_dssp             GGCEEEEEEEECCS
T ss_pred             hhCEEEEEEEecCC
Confidence            99999999998754

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.09  E-value=4.2e-10  Score=62.99  Aligned_cols=84  Identities=27%  Similarity=0.474  Sum_probs=56.9

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCCCCC---------------CCceeeeccceEEEeecCCCCeEEEEEee
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDSSLP---------------SGEKSLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~~~~---------------~~~~~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      .+.+..|++++|.|...+.  ....+.|++....+.               ..........|.|.+++..|+|.|.|.+.
T Consensus        12 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~sL~I~~v~~~D~G~Y~C~v~   91 (117)
T 3q0h_A           12 NISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAPGPGLGLTLQSLTVNDTGEYFCIYH   91 (117)
T ss_dssp             CEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEECSTTCEEECSCCGGGCEEEEEEEE
T ss_pred             CEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEeCCceEEEEeeCChhhCEEEEEEEE
Confidence            4688899999999998762  234689999753210               00111234579999999999999999976


Q ss_pred             cC-CCCceEEeEEEEEeeeecCC
Q psy7616          82 NG-VGDPVTVDMTLEVLCKILPS  103 (147)
Q Consensus        82 ~~-~~~~~~~~~~l~v~~~~~~~  103 (147)
                      .. .+. ....+.|.|..||.+.
T Consensus        92 ~~~~g~-~~~~~~L~V~~pp~~~  113 (117)
T 3q0h_A           92 TYPDGT-YTGRIFLEVLESSVAE  113 (117)
T ss_dssp             EETTCC-EEEEEEEEEECC----
T ss_pred             ECCCCC-eEEEEEEEEEccCccc
Confidence            53 344 4677888888877653

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.08  E-value=5e-10  Score=71.11  Aligned_cols=65  Identities=23%  Similarity=0.387  Sum_probs=47.5

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|.+.+.+  .+.+.|++..  ..+.                  ..+. ..     ....|.|.+++.
T Consensus        15 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   94 (261)
T 2xqy_G           15 AELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSSLTS   94 (261)
T ss_dssp             EEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcCCCc
Confidence            56889999999999988765  5789999863  2110                  0011 11     124799999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus        95 ~DsG~Y~C~~~~~  107 (261)
T 2xqy_G           95 EDSAVYYCGRLGY  107 (261)
T ss_dssp             GGCEEEEEEEECT
T ss_pred             ccCeEEEEEEecC
Confidence            9999999999874

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.07  E-value=3.7e-10  Score=66.86  Aligned_cols=74  Identities=22%  Similarity=0.365  Sum_probs=55.3

Q ss_pred             eEEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          20 LTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ..+..|+.+.|.|.+. +.+.+.+.|++++..+..   ......|.|.++...|+|.|.|.+.|..+...+..+.+.|
T Consensus        95 ~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A           95 LEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKF---SHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             SEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEE---ESSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ceeecCCeEEEEEECCCCCCCceEEEEECCeEccc---cCCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            3678999999999984 446688999998865431   2235578899999999999999999977653344444443

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.07  E-value=3.1e-10  Score=69.71  Aligned_cols=78  Identities=32%  Similarity=0.580  Sum_probs=59.9

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCC--------c--eeeeccceEEEeecCCCCeEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSG--------E--KSLEGFSITLEKVDRHQAGVY   76 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~--------~--~~~~~~~l~~~~~~~~~~g~y   76 (147)
                      +|.+...+.  ...+..|+.+.|.|.+ .+.|.+.+.|++++..+...        .  .......|.|.+++..|+|.|
T Consensus       108 ~~~~~~~~~--~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  185 (217)
T 2vr9_A          108 RDDFRVEPK--DTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGGNLLISNVEPIDEGNY  185 (217)
T ss_dssp             CCSCSBCCC--CEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTTEEEESSCCSTTCEEE
T ss_pred             CCCcEECCC--ccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCCcEEEeeCCHHHCeEE
Confidence            455544444  4578899999999998 78888999999998765421        1  122445799999999999999


Q ss_pred             EEEeecCCCCc
Q psy7616          77 QCTATNGVGDP   87 (147)
Q Consensus        77 ~C~~~~~~~~~   87 (147)
                      .|.+.|..|..
T Consensus       186 ~C~a~N~~G~~  196 (217)
T 2vr9_A          186 KCIAQNLVGTR  196 (217)
T ss_dssp             EEEEEETTEEE
T ss_pred             EEEEEccccee
Confidence            99999987764

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.06  E-value=4e-09  Score=60.60  Aligned_cols=88  Identities=18%  Similarity=0.263  Sum_probs=58.9

Q ss_pred             ceEEcCCCCceEEeeCCeEEEEEeecCCC---CCceEEEecCCCC----------------C--CCce-ee------ecc
Q psy7616          10 SIRTSPSNGQLTVRKGGTITLECKASGNP---VPSIIWSKKDSSL----------------P--SGEK-SL------EGF   61 (147)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~v~w~~~~~~~----------------~--~~~~-~~------~~~   61 (147)
                      .+.+..++..+.+..|++++|.|...+.+   .+.+.|++.+...                +  ..+. ..      ...
T Consensus         6 ~~~V~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   85 (139)
T 1pko_A            6 QFRVIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKV   85 (139)
T ss_dssp             CCEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEE
T ss_pred             EEEEECCCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeE
Confidence            34444344467899999999999986543   3579999976310                0  0010 11      134


Q ss_pred             ceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEee
Q psy7616          62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        62 ~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~   98 (147)
                      .|.|.+++..|+|.|.|.+.+..+. ....+.|.|..
T Consensus        86 sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~~  121 (139)
T 1pko_A           86 ALRIQNVRFSDEGGYTCFFRDHSYQ-EEAAVELKVED  121 (139)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEE-EEEEEEEEEEC
T ss_pred             EEEEccCCHHHCEEEEEEEEcCCCc-eEEEEEEEEec
Confidence            6999999999999999999987654 35667777764

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.06  E-value=4.9e-09  Score=57.67  Aligned_cols=66  Identities=23%  Similarity=0.449  Sum_probs=49.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-------------CCce-ee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-------------SGEK-SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-------------~~~~-~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|.+.+.+.+.+.|++...  .+.             .... ..   ....|.|.+++..|+|.|.|.
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   89 (108)
T 1jhl_L           10 YLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQ   89 (108)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEE
T ss_pred             eeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHCEEEEEE
Confidence            4578899999999999887788899998542  110             0111 11   124699999999999999999


Q ss_pred             eecCC
Q psy7616          80 ATNGV   84 (147)
Q Consensus        80 ~~~~~   84 (147)
                      +.+..
T Consensus        90 ~~n~~   94 (108)
T 1jhl_L           90 QHNEY   94 (108)
T ss_dssp             ECSSS
T ss_pred             EccCC
Confidence            98753

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.06  E-value=9.9e-10  Score=61.72  Aligned_cols=86  Identities=22%  Similarity=0.325  Sum_probs=56.9

Q ss_pred             eEEcCCCCceEEeeCCeEEEEEeecCCCC----CceEEEecCCCC-----------------------CCCceeee----
Q psy7616          11 IRTSPSNGQLTVRKGGTITLECKASGNPV----PSIIWSKKDSSL-----------------------PSGEKSLE----   59 (147)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~v~w~~~~~~~-----------------------~~~~~~~~----   59 (147)
                      +.+...+..+.+..|+++.|.|...+.+.    +.+.|++.+...                       ........    
T Consensus         6 ~~v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~   85 (126)
T 1eaj_A            6 LSITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLK   85 (126)
T ss_dssp             CEESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGG
T ss_pred             EEEECCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEccccc
Confidence            33333333567899999999999866543    349999865210                       00011111    


Q ss_pred             --ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          60 --GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        60 --~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                        ...|.|.+++..|+|.|.|.+.+..+. ....+.|.|.
T Consensus        86 ~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~-~~~~~~L~V~  124 (126)
T 1eaj_A           86 SGDASINVTNLQLSDIGTYQCKVKKAPGV-ANKKIHLVVL  124 (126)
T ss_dssp             GTBCCEEECSCCGGGCEEEEEEEEETTEE-EEEEEEEEEE
T ss_pred             CCeEEEEECcCChHHCeEEEEEEEcCCcc-CCcEEEEEEE
Confidence              256999999999999999999886554 2556666654

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.06  E-value=3.9e-09  Score=67.47  Aligned_cols=71  Identities=17%  Similarity=0.387  Sum_probs=50.6

Q ss_pred             ceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCC--CC--------------C----CCce-ee----eccceE
Q psy7616          10 SIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS--SL--------------P----SGEK-SL----EGFSIT   64 (147)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~--------------~----~~~~-~~----~~~~l~   64 (147)
                      .+...+.  .+.+..|+.+.|.|...+.+.+.+.|++...  ..              .    ..+. ..    ....|.
T Consensus        26 ~v~~~p~--~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           26 VVSQHPS--WVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CEEEECS--EEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             eEEeCCC--eEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            3444443  5689999999999999777778899998641  10              0    0011 11    123699


Q ss_pred             EEeecCCCCeEEEEEeec
Q psy7616          65 LEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        65 ~~~~~~~~~g~y~C~~~~   82 (147)
                      |.+++..|+|.|.|.+.+
T Consensus       104 I~~v~~~D~G~Y~C~~~~  121 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARD  121 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEE
T ss_pred             EccCCccCCEEEEEEEcc
Confidence            999999999999999987

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.05  E-value=2.3e-10  Score=75.35  Aligned_cols=77  Identities=17%  Similarity=0.240  Sum_probs=60.1

Q ss_pred             EeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee------------eeccceEEEeecCCCCeEEEEEeecCCCCceE
Q psy7616          22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS------------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVT   89 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   89 (147)
                      ...|+.+.|.|.+.|.|.|.+.|++++..+......            ...+.|.|.+++..|+|.|+|.+.|..|.. +
T Consensus       258 ~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~-~  336 (347)
T 2ifg_A          258 AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQA-S  336 (347)
T ss_dssp             CEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEE-E
T ss_pred             CccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCce-e
Confidence            357899999999999999999999998877533221            124569999999999999999999988764 6


Q ss_pred             EeEEEEEeee
Q psy7616          90 VDMTLEVLCK   99 (147)
Q Consensus        90 ~~~~l~v~~~   99 (147)
                      ..+.+.|..+
T Consensus       337 ~~~~l~V~~~  346 (347)
T 2ifg_A          337 ASIMAAFMDN  346 (347)
T ss_dssp             EEEEECSCCC
T ss_pred             eEEEEEecCC
Confidence            6666655443

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.05  E-value=7.9e-10  Score=68.77  Aligned_cols=65  Identities=18%  Similarity=0.342  Sum_probs=43.9

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCCCCC---------------------CCceee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDSSLP---------------------SGEKSL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~~~~---------------------~~~~~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|...+.  ....+.|++......                     ......     ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (230)
T 3n9g_H            9 AEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSLRS   88 (230)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCh
Confidence            4578899999999998652  345699997421100                     000011     112399999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.+.
T Consensus        89 ~DsG~Y~C~~~~~  101 (230)
T 3n9g_H           89 EDTAVYYCARDWG  101 (230)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             hhCEEEEEEEccC
Confidence            9999999998764

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.05  E-value=2e-09  Score=66.31  Aligned_cols=81  Identities=20%  Similarity=0.367  Sum_probs=55.7

Q ss_pred             EEeeCCeEEEEEee-cCCCCCceEEEec-CCCCCCCceee----ec---cceEEEeecCCCCeEEEEEeecCCCCceEEe
Q psy7616          21 TVRKGGTITLECKA-SGNPVPSIIWSKK-DSSLPSGEKSL----EG---FSITLEKVDRHQAGVYQCTATNGVGDPVTVD   91 (147)
Q Consensus        21 ~~~~g~~~~l~C~~-~~~~~~~v~w~~~-~~~~~~~~~~~----~~---~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   91 (147)
                      .+..|+.+.|.|.+ .+.|.+.+.|+++ +..+.......    ..   ..+.+.++...|.|.|.|.+.|..+.. ...
T Consensus       121 ~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~-~~~  199 (222)
T 4i0k_A          121 DLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQ-DAH  199 (222)
T ss_dssp             ---CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTE-EEE
T ss_pred             eecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCC-ceE
Confidence            56789999999998 7778899999994 44443322111    11   136788999999999999999988875 777


Q ss_pred             EEEEEeeeecC
Q psy7616          92 MTLEVLCKILP  102 (147)
Q Consensus        92 ~~l~v~~~~~~  102 (147)
                      +.+.+..+|..
T Consensus       200 ~~l~V~~~p~~  210 (222)
T 4i0k_A          200 GSVTITGQPLT  210 (222)
T ss_dssp             EEEECCC----
T ss_pred             EEEEEeCCccc
Confidence            77777766644

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.05  E-value=1.1e-10  Score=72.87  Aligned_cols=78  Identities=13%  Similarity=0.184  Sum_probs=53.1

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-C-ceEEEecCCCC-CCCce---------eeeccceEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-P-SIIWSKKDSSL-PSGEK---------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~-~v~w~~~~~~~-~~~~~---------~~~~~~l~~~~~~~~~~   73 (147)
                      .+|.+.+.++. ...+..|+.++|.|.+.+. |. + .+.|++++..+ .....         ......|.|.++...|.
T Consensus        11 ~~P~v~~~~p~-~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~   89 (231)
T 2w59_A           11 SPIQLYAIPPS-PGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSG   89 (231)
T ss_dssp             -CCEEEEECCC-HHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTT
T ss_pred             CCCEEEEeCcC-hhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCC
Confidence            35666544332 3355689999999998874 53 4 89999988776 22111         11223588888888999


Q ss_pred             eEEEEEeecCCC
Q psy7616          74 GVYQCTATNGVG   85 (147)
Q Consensus        74 g~y~C~~~~~~~   85 (147)
                      |.|.|.+.+..+
T Consensus        90 g~Y~C~~~~~~~  101 (231)
T 2w59_A           90 ERFTCTVQHEEL  101 (231)
T ss_dssp             CCEEEEEECTTC
T ss_pred             CEEEEEEEcCCC
Confidence            999999988643

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.05  E-value=1.2e-10  Score=76.60  Aligned_cols=63  Identities=16%  Similarity=0.244  Sum_probs=44.8

Q ss_pred             EeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCC---------ceeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          22 VRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSG---------EKSLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      +..|+.+.|.|.+.+. |. +.+.|++++..+...         ......+.|.|.++...| |.|.|.+.|..+
T Consensus       132 ~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~  205 (344)
T 1za6_B          132 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPS  205 (344)
T ss_dssp             TTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGG
T ss_pred             ccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCC
Confidence            4689999999998875 54 689999988654210         111122367787777767 999999987654

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.05  E-value=2e-09  Score=64.95  Aligned_cols=85  Identities=18%  Similarity=0.257  Sum_probs=59.2

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCC-
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVG-   85 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~-   85 (147)
                      +|.+...+.   ..+..|+.++|.|.+.+ +.+.+.|++++..+..... ......|.|.+++..|+|.|.|.+.+... 
T Consensus        99 ~p~i~~~p~---~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~  174 (188)
T 1oll_A           99 TPTLSVHPG---PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHA  174 (188)
T ss_dssp             CCEEEEESC---SEEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECEEETTE
T ss_pred             CCeEEECCC---CccccCCEEEEEEEcCC-CCCEEEEEECCccccccccCCCceeEEEECCCCcCCCcEEEEEEEcCCCc
Confidence            455554442   26789999999999866 5568999999877643111 22456799999999999999999987531 


Q ss_pred             -CceEEeEEEEE
Q psy7616          86 -DPVTVDMTLEV   96 (147)
Q Consensus        86 -~~~~~~~~l~v   96 (147)
                       ...+..+.|.|
T Consensus       175 ~s~~S~~~~l~V  186 (188)
T 1oll_A          175 WSFPSEPVKLLV  186 (188)
T ss_dssp             ECCCCCCEEEEE
T ss_pred             CCCCCCcEEEEe
Confidence             12244555544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.04  E-value=1.6e-09  Score=71.88  Aligned_cols=78  Identities=21%  Similarity=0.347  Sum_probs=60.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-----ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      .+.+..|+.+.+.|.+.+ |.+.+.|+++++.....     ......+.|.|.+++..|+|.|+|.+.|..+.. +..+.
T Consensus       255 ~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~  332 (361)
T 2xot_A          255 AWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAMGETFNE-TLSVE  332 (361)
T ss_dssp             CCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEEETTEEEESSCCTTSCEEEEEEEECSSCEE-EEEEE
T ss_pred             CceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEeecCeEEEeecCcccCEEEEEEEecCCCcc-EEEEE
Confidence            568899999999999988 88999999977654221     111255679999999999999999999986664 66666


Q ss_pred             EEEee
Q psy7616          94 LEVLC   98 (147)
Q Consensus        94 l~v~~   98 (147)
                      +.|..
T Consensus       333 l~V~~  337 (361)
T 2xot_A          333 LKVYN  337 (361)
T ss_dssp             EEEES
T ss_pred             EEEEe
Confidence            66643

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.04  E-value=2.2e-09  Score=71.56  Aligned_cols=64  Identities=9%  Similarity=0.116  Sum_probs=46.5

Q ss_pred             EeeCCeEEEEEeecCC---CC-CceEEEecCCCCCCCc----------eeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          22 VRKGGTITLECKASGN---PV-PSIIWSKKDSSLPSGE----------KSLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~---~~-~~v~w~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      +..|+.+.|.|.+.+.   |. ..|.|++++..+....          .......|.|..+...|.|.|.|.+.+...
T Consensus       180 ~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y~C~~~~~~~  257 (376)
T 2aty_A          180 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAF  257 (376)
T ss_pred             eeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEEEEEEEechHhccCCCEEEEEEecCCC
Confidence            7789999999998876   22 2599999886642111          111233688888888999999999988644

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.04  E-value=3.6e-10  Score=77.37  Aligned_cols=78  Identities=27%  Similarity=0.520  Sum_probs=61.9

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-----ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      ...+..|+.+.+.|.+.|.|.|.+.|++++..+...     ......+.+.|.+++..|+|.|+|.+.|..|.. +..+.
T Consensus       394 ~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~  472 (477)
T 2id5_A          394 QVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDGTLEVRYAQVQDNGTYLCIAANAGGND-SMPAH  472 (477)
T ss_dssp             EEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEECTTSCEEESSCCSTTCEEEEEEEEETTEEE-EEEEE
T ss_pred             cEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeCCCCEEEEeeCChHHCEEEEEEEEeCCCcE-EEEEE
Confidence            568899999999999999999999999998766421     112345679999999999999999999987764 66666


Q ss_pred             EEEe
Q psy7616          94 LEVL   97 (147)
Q Consensus        94 l~v~   97 (147)
                      +.|.
T Consensus       473 l~V~  476 (477)
T 2id5_A          473 LHVR  476 (477)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6553

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.04  E-value=4.6e-10  Score=68.11  Aligned_cols=63  Identities=14%  Similarity=0.124  Sum_probs=42.0

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce---e----eeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---S----LEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~---~----~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .+..|+.++|.|.+.+.+ +.+.|++++..+.....   .    .....|.|.+++..|+|.|.|.+.+..
T Consensus       110 ~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~  179 (196)
T 2d3v_A          110 VVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRH  179 (196)
T ss_dssp             -------CEEEEEESSCC-SEEEEEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETT
T ss_pred             cccCCCcEEEEEEcCCCC-CEEEEEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccC
Confidence            678999999999998877 89999999987642211   1    123678999999999999999998854

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.04  E-value=4.4e-10  Score=70.38  Aligned_cols=64  Identities=17%  Similarity=0.284  Sum_probs=43.8

Q ss_pred             ceEEeeCCeEEEEEeecCCC----CCceEEEecCCCCC--------------C-----------Cce-ee-----eccce
Q psy7616          19 QLTVRKGGTITLECKASGNP----VPSIIWSKKDSSLP--------------S-----------GEK-SL-----EGFSI   63 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~~~~~~--------------~-----------~~~-~~-----~~~~l   63 (147)
                      .+.+..|+.++|.|...+.+    ...+.|++......              .           .+. ..     ....|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L   88 (239)
T 3tv3_H            9 PTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKNLVFL   88 (239)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGTEEEE
T ss_pred             CEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCCEEEE
Confidence            34788999999999987654    34799998431100              0           000 00     11249


Q ss_pred             EEEeecCCCCeEEEEEeec
Q psy7616          64 TLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        64 ~~~~~~~~~~g~y~C~~~~   82 (147)
                      .|.+++..|+|.|.|.+.+
T Consensus        89 ~I~~v~~~DsG~Y~C~~~~  107 (239)
T 3tv3_H           89 KLNSVTAADTATYYCARFG  107 (239)
T ss_dssp             EECSCCGGGCEEEEEEEEE
T ss_pred             EECCCChhhCEEEEEEEec
Confidence            9999999999999999864

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.03  E-value=8.5e-09  Score=71.33  Aligned_cols=77  Identities=13%  Similarity=0.167  Sum_probs=51.8

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCC--CceEEEecCCCCCCCc----e-------eeeccceEEEeecCCCCe
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPV--PSIIWSKKDSSLPSGE----K-------SLEGFSITLEKVDRHQAG   74 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~----~-------~~~~~~l~~~~~~~~~~g   74 (147)
                      +|.+.+.++. ...+..|+.+.|.|.+.+..+  ..+.|++++..+....    .       ....+.|.|......|.|
T Consensus       296 ~p~v~~~~p~-~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g  374 (512)
T 1zvo_C          296 PLGVYLLTPA-VQDLWLRDKATFTCFVVGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGT  374 (512)
T ss_pred             CCEEEEECCC-hHHhccCCceEEEEEEeceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCC
Confidence            4565554432 224567999999999987533  3799999987654111    0       111234778777888899


Q ss_pred             EEEEEeecCCC
Q psy7616          75 VYQCTATNGVG   85 (147)
Q Consensus        75 ~y~C~~~~~~~   85 (147)
                      .|.|.+.|..+
T Consensus       375 ~y~C~a~n~~~  385 (512)
T 1zvo_C          375 SVTCTLNHPSL  385 (512)
T ss_pred             eEEEEEEeCCC
Confidence            99999988654

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.03  E-value=4.6e-10  Score=76.37  Aligned_cols=75  Identities=16%  Similarity=0.244  Sum_probs=50.1

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCc---------eeeeccceEEEeecCCCCeEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGE---------KSLEGFSITLEKVDRHQAGVY   76 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~g~y   76 (147)
                      +|.+...++..  .+..|+.+.|.|.+.+. |. +.+.|++++..+....         .......|.|.++...| |.|
T Consensus       132 ~P~i~~~~~~~--~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y  208 (457)
T 1hzh_H          132 GPSVFPLAPSS--KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY  208 (457)
T ss_dssp             CCEEEEECCCS--CCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCC
T ss_pred             CCeEEecCccc--cccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceE
Confidence            34444433322  35689999999998876 54 7899999886543110         01112357888888888 999


Q ss_pred             EEEeecCCC
Q psy7616          77 QCTATNGVG   85 (147)
Q Consensus        77 ~C~~~~~~~   85 (147)
                      .|.+.+..+
T Consensus       209 ~C~a~n~~~  217 (457)
T 1hzh_H          209 ICNVNHKPS  217 (457)
T ss_dssp             EEEEEEGGG
T ss_pred             EEEEEeCCC
Confidence            999987543

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.03  E-value=1.7e-09  Score=75.78  Aligned_cols=86  Identities=23%  Similarity=0.426  Sum_probs=68.3

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEEeec
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .|.+...+.  ...+..|+++.+.|...|.|.|.+.|++++.++....+.     .....|.|..+...|+|.|+|++.|
T Consensus       482 ~P~~~~~~~--~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~N  559 (573)
T 3uto_A          482 QPRFIVKPY--GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN  559 (573)
T ss_dssp             SCEEEECCC--CEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCccccCCC--CcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEEe
Confidence            466665554  558899999999999999999999999999888544332     1344688999999999999999999


Q ss_pred             CCCCceEEeEEEEE
Q psy7616          83 GVGDPVTVDMTLEV   96 (147)
Q Consensus        83 ~~~~~~~~~~~l~v   96 (147)
                      ..|.. +..+.|.|
T Consensus       560 ~~G~~-~~~v~l~V  572 (573)
T 3uto_A          560 SYGTK-EEIVFLNV  572 (573)
T ss_dssp             TTEEE-EEEEEEEE
T ss_pred             CCCcE-EEEEEEEE
Confidence            98875 66666654

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.02  E-value=1.1e-09  Score=59.33  Aligned_cols=69  Identities=17%  Similarity=0.398  Sum_probs=51.9

Q ss_pred             ceEEeeCCeEEEEEeecC-CCCCceEEEecCCC----CCCCce-----eee----ccceEEEeecCCCCeEEEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDSS----LPSGEK-----SLE----GFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~----~~~~~~-----~~~----~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      ...+..|+++.|+|.+.+ .+.|.++|.|.+..    ++....     ...    ...|.|.++...|+|.|+|.+.+..
T Consensus        23 ~~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~  102 (122)
T 1xau_A           23 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS  102 (122)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             cEEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCC
Confidence            458889999999999976 47899999997642    221111     112    2368889999999999999999876


Q ss_pred             CCc
Q psy7616          85 GDP   87 (147)
Q Consensus        85 ~~~   87 (147)
                      +..
T Consensus       103 g~i  105 (122)
T 1xau_A          103 QVI  105 (122)
T ss_dssp             EEE
T ss_pred             Cce
Confidence            654

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.02  E-value=3.6e-09  Score=66.81  Aligned_cols=72  Identities=18%  Similarity=0.320  Sum_probs=52.4

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecC-CC---CCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASG-NP---VPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~---~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      +.+.+.|...  .+..|+.++|.|...+ .|   ...++|++++..+..     ....+.+..+...++|.|+|.+.+..
T Consensus         3 ~tVs~~P~~~--~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsG-----aT~tLti~s~t~sdSG~YqCvVTDa~   75 (304)
T 3shs_A            3 FTVSIQSNKR--CFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHEN-----NTATLTVADATSENAGSYKVTVQDTD   75 (304)
T ss_dssp             EEEEEEESCS--SBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSC-----CSSEEEESSCCGGGCEEEEEEEEETT
T ss_pred             cEEEeCCCCc--cccCCCCEEEEEEecCCCCCCCCceEEEEECCccccC-----CcceEEeeeccccCCeEEEEEEEECC
Confidence            3445556544  6789999999998654 35   346999999866542     23467778888999999999998765


Q ss_pred             CCc
Q psy7616          85 GDP   87 (147)
Q Consensus        85 ~~~   87 (147)
                      +..
T Consensus        76 Gcs   78 (304)
T 3shs_A           76 TMT   78 (304)
T ss_dssp             TCC
T ss_pred             CCe
Confidence            543

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.02  E-value=1.4e-09  Score=67.75  Aligned_cols=64  Identities=20%  Similarity=0.349  Sum_probs=42.8

Q ss_pred             eEEeeCCeEEEEEeecCCC--CCce--EEEecCCCCC----------C------------Cce-ee-----eccceEEEe
Q psy7616          20 LTVRKGGTITLECKASGNP--VPSI--IWSKKDSSLP----------S------------GEK-SL-----EGFSITLEK   67 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~--~~~v--~w~~~~~~~~----------~------------~~~-~~-----~~~~l~~~~   67 (147)
                      +.+..|++++|.|...+.+  ...+  .|++......          .            .+. ..     ....|.|.+
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   89 (232)
T 3qhz_H           10 ALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLTMTN   89 (232)
T ss_dssp             SEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             EEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEEECc
Confidence            4788999999999986532  2445  9997431100          0            000 11     112589999


Q ss_pred             ecCCCCeEEEEEeecC
Q psy7616          68 VDRHQAGVYQCTATNG   83 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~   83 (147)
                      ++..|+|.|.|.+.+.
T Consensus        90 v~~~DsG~Y~C~~~~~  105 (232)
T 3qhz_H           90 MDPVDTATYYCARTLR  105 (232)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             CChhhCEEEEEEEeec
Confidence            9999999999999854

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.02  E-value=3.9e-09  Score=65.96  Aligned_cols=64  Identities=33%  Similarity=0.652  Sum_probs=46.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCC--C-----------------CCCcee----eeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSS--L-----------------PSGEKS----LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~--~-----------------~~~~~~----~~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|+.++|.|.+.. +.+.+.|++....  +                 ......    .....|.|.+++..|+|.
T Consensus         8 ~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~   86 (238)
T 1bec_A            8 NKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATPSQTSV   86 (238)
T ss_dssp             EEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCGGGCEE
T ss_pred             eeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCcccCEE
Confidence            567899999999999853 6778999986421  0                 001111    122479999999999999


Q ss_pred             EEEEeecC
Q psy7616          76 YQCTATNG   83 (147)
Q Consensus        76 y~C~~~~~   83 (147)
                      |.|.+.+.
T Consensus        87 Y~C~~~~~   94 (238)
T 1bec_A           87 YFCASGGG   94 (238)
T ss_dssp             EEEEEESC
T ss_pred             EEEEEecC
Confidence            99999875

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.02  E-value=3.4e-09  Score=58.91  Aligned_cols=81  Identities=25%  Similarity=0.345  Sum_probs=54.2

Q ss_pred             ceEEeeCCeEEEEEee-cCCCCC----ceEEEecCCCCC--------------CCc-eeee--------ccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKA-SGNPVP----SIIWSKKDSSLP--------------SGE-KSLE--------GFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~-~~~~~~----~v~w~~~~~~~~--------------~~~-~~~~--------~~~l~~~~~~~   70 (147)
                      .+.+..|++++|.|.. .+.+.+    .+.|++.+....              ... ....        ...|.|.+++.
T Consensus         9 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~   88 (118)
T 3udw_C            9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRV   88 (118)
T ss_dssp             EEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCG
T ss_pred             eEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecCh
Confidence            3578899999999998 443433    399999743210              000 0111        55799999999


Q ss_pred             CCCeEEEEEeec-CCCCceEEeEEEEEeeee
Q psy7616          71 HQAGVYQCTATN-GVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        71 ~~~g~y~C~~~~-~~~~~~~~~~~l~v~~~~  100 (147)
                      .|+|.|.|.+.+ ..+. ....+.|.|..+|
T Consensus        89 ~D~G~Y~C~v~~~~~~~-~~~~~~L~V~~~P  118 (118)
T 3udw_C           89 EDEGNYTCLFVTFPQGS-RSVDIWLRVLAKP  118 (118)
T ss_dssp             GGCEEEEEEEEEETTEE-EEEEEEEEEEC--
T ss_pred             HHCeEEEEEEEECCCCC-ccceEEEEEEeCC
Confidence            999999999988 4443 4666777776554

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.02  E-value=1.8e-09  Score=66.80  Aligned_cols=88  Identities=18%  Similarity=0.265  Sum_probs=61.2

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCC-
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVG-   85 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~-   85 (147)
                      +|.+...+.   ..+..|+.++|.|...+.+.+.+.|++++..+..... ......|.|.+++..|+|.|.|.+.+... 
T Consensus       106 ~P~i~~~p~---~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  182 (218)
T 1uct_A          106 KPFLSADRG---LVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYNRSP  182 (218)
T ss_dssp             CCEEEESSC---SEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECTTST
T ss_pred             CCEEEeCCC---CccCCCCCEEEEEeCCCCCCCEEEEEECCCcccccccCCCccCEEEEccCCcccCEEEEEEEEcCCCC
Confidence            455554442   2678999999999666667788999999987654221 12356789999999999999999987532 


Q ss_pred             ---CceEEeEEEEEee
Q psy7616          86 ---DPVTVDMTLEVLC   98 (147)
Q Consensus        86 ---~~~~~~~~l~v~~   98 (147)
                         ...+..+.|.|..
T Consensus       183 ~~~s~~S~~~~l~V~g  198 (218)
T 1uct_A          183 YLWSFPSNALELVVTD  198 (218)
T ss_dssp             TEECCCCCCEEEEEC-
T ss_pred             CcCCCCCCcEEEEEec
Confidence               1224555665553

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.02  E-value=3.5e-10  Score=69.25  Aligned_cols=71  Identities=20%  Similarity=0.421  Sum_probs=54.4

Q ss_pred             eeCCeEEEEEeecCCCCCceEEEecCCCCCCC----ceeeeccceEEEee-cCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          23 RKGGTITLECKASGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKV-DRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~-~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      ..|+.+.|.|.  +.|.+.+.|++++..+...    ........|.|.++ ...|+|.|+|.+.|..+...+..+.+.
T Consensus       126 ~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~  201 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR  201 (204)
T ss_dssp             EETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred             ecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence            38999999998  6688889999998766432    11224678999999 999999999999998876434444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.01  E-value=4e-10  Score=76.72  Aligned_cols=89  Identities=25%  Similarity=0.444  Sum_probs=62.8

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCC------CceeeeccceEEEeecCCCCeEEEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS------GEKSLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +|.+...+.  ...+..|+.+++.|.+.  |.|.+.|+++++....      .......+.|.|.+++..|+|.|+|.+.
T Consensus       352 ~P~i~~~~~--~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g~L~i~~v~~~D~G~Y~C~a~  427 (452)
T 3zyi_A          352 APFIMDAPR--DLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDGTLNFSHVLLSDTGVYTCMVT  427 (452)
T ss_dssp             CCCCSBCCC--CEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEECTTSCEECSSCCTTCCEEEEEEEE
T ss_pred             Ccccccccc--cccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEECCCCeEEEeecCHHHCEEEEEEEE
Confidence            344444443  56888999999999987  8889999996544321      1122345679999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeeec
Q psy7616          82 NGVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~  101 (147)
                      |..|.. +..+.+.|...+.
T Consensus       428 N~~G~~-~~~~~l~v~~~~~  446 (452)
T 3zyi_A          428 NVAGNS-NASAYLNVSTAGT  446 (452)
T ss_dssp             CSSCEE-EEEEEEEC-----
T ss_pred             cCCCcE-EEEEEEEEEcccc
Confidence            988874 6777777665443

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.01  E-value=4e-09  Score=66.47  Aligned_cols=65  Identities=20%  Similarity=0.364  Sum_probs=45.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCC--------C----------C-ce-eeeccc--eEEEeecCCCCeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP--------S----------G-EK-SLEGFS--ITLEKVDRHQAGVY   76 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~--------~----------~-~~-~~~~~~--l~~~~~~~~~~g~y   76 (147)
                      .+.+..|+.++|.|...+.+.+.+.|++......        .          . +. ......  |.|.+++..|+|.|
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~L~I~~v~~~DsG~Y   89 (253)
T 3to4_D           10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTL   89 (253)
T ss_dssp             EEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSCCEEEEESCSSCEEE
T ss_pred             eEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCeEEEccCChhhCeEE
Confidence            5578899999999998777788899998321100        0          0 10 001111  99999999999999


Q ss_pred             EEEeecC
Q psy7616          77 QCTATNG   83 (147)
Q Consensus        77 ~C~~~~~   83 (147)
                      .|.+.+.
T Consensus        90 ~C~~~~~   96 (253)
T 3to4_D           90 YCTSSAD   96 (253)
T ss_dssp             EEEEECS
T ss_pred             EEEEecC
Confidence            9998753

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.01  E-value=3.4e-10  Score=61.58  Aligned_cols=34  Identities=15%  Similarity=0.472  Sum_probs=30.9

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        64 ~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   97 (100)
T 3knb_A           64 TLIIMDVQKQDGGLYTLSLGNEFGSD-SATVNIHI   97 (100)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEcCCCccCCEEEEEEEEECCCEE-EEEEEEEE
Confidence            58889999999999999999999987 77888877

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.01  E-value=3e-10  Score=62.57  Aligned_cols=35  Identities=31%  Similarity=0.518  Sum_probs=31.4

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        70 ~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  104 (107)
T 3knb_B           70 GLLLTAALPTDAGVYVCRARNAAGEA-YAAAAVTVL  104 (107)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEecCChhhCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            58889999999999999999999988 778888874

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.00  E-value=2.3e-10  Score=62.80  Aligned_cols=73  Identities=23%  Similarity=0.321  Sum_probs=53.5

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc--eeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--KSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+|.+...|..   .+..|++++|.|...+. ...+.|++++..+....  .......|.|.+++..|+|.|.|.+.+.
T Consensus         4 ~kP~i~~~p~~---~v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~   78 (105)
T 2vsd_A            4 PQPSLSLHPSQ---GVSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFDKEKDKEQDAAEFSFAVTNLEDAGTYQCRYQVS   78 (105)
T ss_dssp             CCCEEEEESCS---SCCTTCEEEEEEECCSS-CEEEEEEETTEEEEEEEECTTCSEEEEEEECCSGGGCEEEEEEEEEE
T ss_pred             CCCEEEeCCCC---CcCcCCCEEEEEEcCCC-CcEEEEEECCccceeeeccCCCCEEEEEECCCCHHHCeEEEEEEEcC
Confidence            46777777653   57899999999998763 45789999875432110  0123456889999999999999999874

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.00  E-value=3.1e-09  Score=63.88  Aligned_cols=73  Identities=22%  Similarity=0.399  Sum_probs=54.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-eeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-KSLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      +|.+...+.   ..+..|+.+.|.|.+.+ +.+.+.|++++..+.... .......|.|.+++..|+|.|.|.+.|..
T Consensus        94 ~p~i~~~p~---~~v~~G~~v~l~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~  167 (184)
T 2gi7_A           94 KPSLSAQPG---PAVSSGGDVTLQCQTRY-GFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSR  167 (184)
T ss_dssp             CCEEEEECC---CSSCCTTCEEEEEECSS-CCCEEEEEECCCCTTSCCCCEEEEESSSEEEETTCCSEEEEEEEECTT
T ss_pred             CCEEEeCCC---ceecCCCcEEEEEEcCC-CCcEEEEEECCCcCcceecCCCceEEEEEccCCccCCeEEEEEEEeCC
Confidence            455555542   24568999999999866 446899999988765322 12345678899999999999999999864

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.00  E-value=2.1e-09  Score=65.61  Aligned_cols=75  Identities=19%  Similarity=0.255  Sum_probs=56.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee------eeccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      ...+..|+.+.+.|.+.+.|.|.+.|++++..+......      ...+.|.|..+...|.|.|+|.+.|..+.. ...+
T Consensus       127 ~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~-~~~~  205 (218)
T 4frw_A          127 ALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQ-DQRI  205 (218)
T ss_dssp             CEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSS-CEEE
T ss_pred             eeeeeeccccceeeeccCCcCceEEEEECCcccccCceEecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCe-EEEE
Confidence            345667889999999999899999999998766432221      123468899999999999999999987765 3333


Q ss_pred             EE
Q psy7616          93 TL   94 (147)
Q Consensus        93 ~l   94 (147)
                      .+
T Consensus       206 t~  207 (218)
T 4frw_A          206 TH  207 (218)
T ss_dssp             EE
T ss_pred             EE
Confidence            33

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.00  E-value=8.5e-10  Score=60.85  Aligned_cols=74  Identities=19%  Similarity=0.298  Sum_probs=53.1

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-----ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEe
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-----SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-----~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      ..+|.+...+..   .+..|++++|.|.+...+..     .+.|++++..+..   ......+.|.+++..|+|.|.|.+
T Consensus         6 ~~kP~l~~~p~~---~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~---~~~~~~l~i~~v~~~dsG~Y~C~~   79 (108)
T 4hwn_A            6 FPAPILRAVPSA---EPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS---RGLSSEFQIPTASEDHSGSYWCEA   79 (108)
T ss_dssp             CCCCEEEEESCS---SCBTTCCEEEEEEC---------CCEEEEEETTEEEEE---EESCCEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEecCCC---cCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC---CCcccEEEeCccCcccCeEEEEEE
Confidence            356778777753   47789999999998654433     3999999865531   224567889999999999999999


Q ss_pred             ecCCC
Q psy7616          81 TNGVG   85 (147)
Q Consensus        81 ~~~~~   85 (147)
                      .+..+
T Consensus        80 ~~~~~   84 (108)
T 4hwn_A           80 ATEDN   84 (108)
T ss_dssp             ECTTS
T ss_pred             EeCCC
Confidence            88643

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.00  E-value=1.3e-09  Score=66.06  Aligned_cols=74  Identities=22%  Similarity=0.454  Sum_probs=55.1

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce------eeeccceEEEeecCCCCeEEEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +|.+...+..   .+..|+.++|.|.+.+ +.+.+.|++++..+.....      ......|.|.+++..|+|.|.|.+.
T Consensus       100 ~p~~~~~~~~---~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  175 (196)
T 3p2t_A          100 KPTLSALPSP---LVTSGKSVTLLCQSRS-PMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSS  175 (196)
T ss_dssp             CCEEEEESCS---EECTTCCEEEEEEEEE-EEEEEEEEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEeCCcc---eecCCCeEEEEEecCC-CCCEEEEEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEE
Confidence            3455544432   6789999999999876 4568999999876643221      1245679999999999999999999


Q ss_pred             cCCC
Q psy7616          82 NGVG   85 (147)
Q Consensus        82 ~~~~   85 (147)
                      |..+
T Consensus       176 n~~~  179 (196)
T 3p2t_A          176 HGFS  179 (196)
T ss_dssp             CGGG
T ss_pred             cCCC
Confidence            8654

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=98.98  E-value=1.1e-08  Score=61.62  Aligned_cols=78  Identities=15%  Similarity=0.145  Sum_probs=47.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCc-eEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~-v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ...+..|+++.|.|.... +.+. +.|...-..-...........+.+.+++.  .|.|.|.+..... .....+.+.+.
T Consensus         8 ~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~~~~~~~l~l~~vs~--~g~y~C~~~c~~~-~~~~~~~l~V~   83 (185)
T 1iam_A            8 KVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE--DSQPMCYSNCPDG-QSTAKTFLTVY   83 (185)
T ss_dssp             EEEEETTEEEEEEEEECS-SSCSEEEEECSSCEEEECSSSSSEEEEEEEEECS--CBCCEEEEECSSC-EEEEECEEEEE
T ss_pred             CcEEeCCCCEEEEEEccC-CCCccceEEeeCCCccEeccCCceeEEEEEecCc--CCEEEEEEECCCC-ceEEEEEEEEe
Confidence            457899999999999864 4444 77764211100000011224578888873  4899999865433 34666677776


Q ss_pred             eee
Q psy7616          98 CKI  100 (147)
Q Consensus        98 ~~~  100 (147)
                      .+|
T Consensus        84 ~~P   86 (185)
T 1iam_A           84 WTP   86 (185)
T ss_dssp             BCC
T ss_pred             CCC
Confidence            544

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.98  E-value=4.3e-09  Score=66.12  Aligned_cols=88  Identities=17%  Similarity=0.228  Sum_probs=61.8

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCC--
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGV--   84 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~--   84 (147)
                      +|.+...+.   ..+..|++++|.|.+.+ +.+.+.|++++..+..... ......|.|.+++..|+|.|.|.+.+..  
T Consensus       102 ~P~i~~~p~---~~v~~G~~vtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~  177 (242)
T 1p6f_A          102 TPTLSVHPG---PEVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHA  177 (242)
T ss_dssp             CCEEEEESC---SEEETTCEEEEEEECTT-SCSEEEEEECSSSCEEEEEECSSEEEEEEEECCGGGCEEEEEEEEEETTE
T ss_pred             CCceEccCC---CccCCCCcEEEEEecCC-CCCEEEEEECCCccCccccCCCceEEEEeCCCccccCEEEEEEEECCCCc
Confidence            455655543   26789999999999876 4568999999876643111 1245578999999999999999998753  


Q ss_pred             CCceEEeEEEEEeee
Q psy7616          85 GDPVTVDMTLEVLCK   99 (147)
Q Consensus        85 ~~~~~~~~~l~v~~~   99 (147)
                      ....+..+.|.|..+
T Consensus       178 ~s~~S~~~~l~V~~~  192 (242)
T 1p6f_A          178 WSFPSEPVKLLVTGD  192 (242)
T ss_dssp             ECCCCCCEEEEEEC-
T ss_pred             ccCCCCCEEEEEecc
Confidence            122355667777654

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.97  E-value=5.3e-09  Score=66.09  Aligned_cols=91  Identities=20%  Similarity=0.317  Sum_probs=59.9

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-----ceEEEe--cCCCCC-------------CCce-e---eeccc
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-----SIIWSK--KDSSLP-------------SGEK-S---LEGFS   62 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-----~v~w~~--~~~~~~-------------~~~~-~---~~~~~   62 (147)
                      .+|.+...+.  .+.+..|+.++|.|.+.+.+.+     .+.|++  ++..+.             .... .   .....
T Consensus       120 ~~~~v~~~p~--~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  197 (256)
T 1nqb_A          120 SDIELTQTPL--SLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFT  197 (256)
T ss_dssp             CCCCEEEECS--EEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEE
T ss_pred             ccccEEecCc--EEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEE
Confidence            3444444443  5578899999999999887765     899999  444321             0011 1   12336


Q ss_pred             eEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEeee
Q psy7616          63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK   99 (147)
Q Consensus        63 l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~   99 (147)
                      |.|.+++..|+|.|.|.+.+.........+.|.|..+
T Consensus       198 L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  234 (256)
T 1nqb_A          198 LKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA  234 (256)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred             EEECCCChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence            8999999999999999998754333344555666543

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.97  E-value=7.1e-09  Score=57.19  Aligned_cols=85  Identities=21%  Similarity=0.353  Sum_probs=55.2

Q ss_pred             eEEcCCCCceEEeeCCeEEEEEee-cCCCCCceEEEecCCC-CC------------C---Cce-ee-eccceEEEeecCC
Q psy7616          11 IRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSS-LP------------S---GEK-SL-EGFSITLEKVDRH   71 (147)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~-~~------------~---~~~-~~-~~~~l~~~~~~~~   71 (147)
                      +........+.+..|++++|.|.. .+.+.+.+.|++.... +.            .   .+. .. ....|.|.+++.+
T Consensus         4 ~~~~~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~sL~I~~v~~~   83 (110)
T 2ptt_A            4 IRARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYLEENNGALHISNVRKE   83 (110)
T ss_dssp             ----CCCCSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEECTTTCCEEESSCCGG
T ss_pred             EEccCCCCCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEEeCCCccEEECCCCcc
Confidence            333333445789999999999997 5556678999994322 10            0   011 11 3457999999999


Q ss_pred             CCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          72 QAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        72 ~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      |+|.|.|.+.+....  ...+.|.|.
T Consensus        84 DsG~Y~C~v~~~~~~--~~~~~L~V~  107 (110)
T 2ptt_A           84 DKGTYYMRVLRETEN--ELKITLEVF  107 (110)
T ss_dssp             GCEEEEEEEESSSBC--CEEEEEEEE
T ss_pred             cCeEEEEEEEcCCCc--EEEEEEEEE
Confidence            999999999875422  345555554

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.94  E-value=3.1e-10  Score=73.09  Aligned_cols=79  Identities=15%  Similarity=0.282  Sum_probs=47.3

Q ss_pred             eEEeCCce-EEcCCCCceEEeeCCeEEEEEeecCC-CCC--ceEEEecCCCCCCCcee--eeccceEEEeecCCCCeEEE
Q psy7616           4 LQMVPPSI-RTSPSNGQLTVRKGGTITLECKASGN-PVP--SIIWSKKDSSLPSGEKS--LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         4 ~~~~~p~~-~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~--~v~w~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .++.+|.- .+.+.+.  .+..|+.++|.|.+.+. |..  .|.|++++..+......  .....+.+......+.+.|.
T Consensus        81 ~V~~~P~~v~I~~~~~--~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~~~~D~g~~~~  158 (291)
T 1mq8_A           81 TVYWTPERVELAPLPS--WQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFS  158 (291)
T ss_dssp             EECBCCSCCCBCCCCS--BCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCCSSSCSSCEEE
T ss_pred             EEecCCCCCEEecCCc--cccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeeeeeccCCceEE
Confidence            34444533 3334322  57889999999998775 333  48999999766422111  11223444444444445899


Q ss_pred             EEeecCC
Q psy7616          78 CTATNGV   84 (147)
Q Consensus        78 C~~~~~~   84 (147)
                      |++.+..
T Consensus       159 C~A~~~l  165 (291)
T 1mq8_A          159 CRTELDL  165 (291)
T ss_dssp             EEEEEEC
T ss_pred             EEEEecC
Confidence            9999753

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.94  E-value=5.8e-09  Score=65.80  Aligned_cols=91  Identities=16%  Similarity=0.303  Sum_probs=60.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC-------------CCce-ee---eccceEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP-------------SGEK-SL---EGFSITLEKV   68 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~-------------~~~~-~~---~~~~l~~~~~   68 (147)
                      +|.+...+.  ...+..|+.++|.|.+.+.+.+.+.|++..  ..+.             .... ..   ....|.|.++
T Consensus       138 ~~~~~~~p~--~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  215 (256)
T 3umt_A          138 DIQLTQSPS--SLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSL  215 (256)
T ss_dssp             CCCEEEECS--EEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSC
T ss_pred             ccEEEcCCC--eEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCC
Confidence            455555554  468889999999999988888899999843  1111             0010 11   1225999999


Q ss_pred             cCCCCeEEEEEeecCCCCceEEeEEEEEeeee
Q psy7616          69 DRHQAGVYQCTATNGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        69 ~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~~  100 (147)
                      +..|+|.|.|.+.+.........+.|.|..++
T Consensus       216 ~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~  247 (256)
T 3umt_A          216 ESEDFVDYYCLQYASSPPTFGGGTKLEIKRAA  247 (256)
T ss_dssp             CGGGCSEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             ChhHCEEEEEEEeeCCCcEECCCEEEEEECCC
Confidence            99999999999988654434455666666443

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.94  E-value=2.3e-08  Score=62.18  Aligned_cols=65  Identities=17%  Similarity=0.362  Sum_probs=46.1

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCC--CCC----------------CCce--ee-----eccceEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDS--SLP----------------SGEK--SL-----EGFSITLEKVDRH   71 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~--~~~----------------~~~~--~~-----~~~~l~~~~~~~~   71 (147)
                      .+.+..|+.+.|.|...+.  +.+.+.|++...  .+.                ...+  ..     ....|.|.+++..
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~   89 (230)
T 1ypz_F           10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE   89 (230)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred             EEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEECcCChh
Confidence            5688899999999998764  456799998531  110                0011  11     1236999999999


Q ss_pred             CCeEEEEEeecC
Q psy7616          72 QAGVYQCTATNG   83 (147)
Q Consensus        72 ~~g~y~C~~~~~   83 (147)
                      |+|.|.|.+.+.
T Consensus        90 D~G~Y~C~~~~~  101 (230)
T 1ypz_F           90 DEAIYYCSYGEG  101 (230)
T ss_dssp             GCSEEEEEECCT
T ss_pred             hCEEEEEEEECC
Confidence            999999999873

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=98.94  E-value=8.7e-10  Score=66.48  Aligned_cols=59  Identities=22%  Similarity=0.423  Sum_probs=49.3

Q ss_pred             eeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          23 RKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      ..|+.+.|.|.+   |.+.+.|++++..+.....  ....|.|.++...|+|.|+|.+.|..+.
T Consensus       120 ~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~--~~~~L~i~~v~~~D~G~Y~C~a~N~~g~  178 (186)
T 1jbj_A          120 RGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA--TKNTWNLGNNAKDPRGTYQCQGAKETSN  178 (186)
T ss_dssp             SSSCEEEEECSS---SCSCEEEEETTEECCCSSC--CSSCCEEEETTSCCEEEEEEEESSCEEE
T ss_pred             CCCCeEEEEeeC---CCCeEEEEECCEECcccCC--CcceEEECCCCcCcCEEEEEEEEcCcCC
Confidence            389999999988   7789999999988753322  5667999999999999999999987554

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=98.93  E-value=9.5e-09  Score=55.09  Aligned_cols=69  Identities=22%  Similarity=0.369  Sum_probs=53.9

Q ss_pred             ceEEeeCCeEEEEEeecC-CCCCceEEEecCC----CCCCCce--eeecc----ceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDS----SLPSGEK--SLEGF----SITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~----~~~~~~~--~~~~~----~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      ...+..|+++.|.|.+.+ .+.|.++|.+-+.    +|+....  ...++    .|.|.++-..|+|.|+|.+....+..
T Consensus        20 ~hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg~i   99 (120)
T 2aw2_A           20 EHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLI   99 (120)
T ss_dssp             EEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             cceEecCCeEEEEccEEeccCCCceEEEecCCceEEECccccccceecCCeeEEEEEEeeeeEcCCcceEEEeeCCCCcE
Confidence            458899999999999988 5899999999763    4544332  23344    68888999999999999998876553

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=98.93  E-value=6e-09  Score=65.82  Aligned_cols=65  Identities=25%  Similarity=0.466  Sum_probs=43.8

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCC--CCC------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDS--SLP------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~--~~~------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|...+.  ....+.|++...  ...                  ..+. ..     ....|.|.+++.
T Consensus        32 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~  111 (256)
T 3sob_H           32 GGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSLRA  111 (256)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             cEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCCCc
Confidence            3478899999999998653  245799997431  110                  0000 11     112399999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      +|+|.|.|.+.+.
T Consensus       112 ~DsG~Y~C~~~~~  124 (256)
T 3sob_H          112 EDTAVYYCARGSG  124 (256)
T ss_dssp             GGCEEEEEEEESS
T ss_pred             ccCEEEEEEEecC
Confidence            9999999998753

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=98.93  E-value=1.8e-08  Score=57.60  Aligned_cols=89  Identities=15%  Similarity=0.327  Sum_probs=55.3

Q ss_pred             eEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC-----CCCce-ee---eccceEEEeecCCCCeEEEEE
Q psy7616          11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL-----PSGEK-SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~-----~~~~~-~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      +...|.  .+.+..|+.+.|.|...+.  +.+.|++..  ..+     ..... ..   ....|.|.++..+|+|.|.|.
T Consensus        20 v~q~p~--~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~   95 (133)
T 3khq_A           20 IWQHPR--FAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCK   95 (133)
T ss_dssp             EEEECS--EEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             eEEcCc--eEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEE
Confidence            344444  5688999999999999875  889999973  221     01111 11   123599999999999999999


Q ss_pred             eecCCCC---ceEEeEEEEEeeeecCC
Q psy7616          80 ATNGVGD---PVTVDMTLEVLCKILPS  103 (147)
Q Consensus        80 ~~~~~~~---~~~~~~~l~v~~~~~~~  103 (147)
                      +.+..+.   .....+.|.|...|.+.
T Consensus        96 a~n~~g~~~~~~g~gt~L~V~~~p~~~  122 (133)
T 3khq_A           96 QKCDSANHNVTDSCGTELLVLGFSTLD  122 (133)
T ss_dssp             ESSCC-------CCCEEEEEC------
T ss_pred             EEeCCCCcceeECCCEEEEEEecccch
Confidence            9886531   12344566666655543

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=98.93  E-value=2.2e-09  Score=67.68  Aligned_cols=64  Identities=17%  Similarity=0.369  Sum_probs=43.7

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCCCCC--------------------CCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDSSLP--------------------SGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~~~~--------------------~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|...+.  ....+.|++......                    ..+. ..     ....|.|.+++.
T Consensus         8 ~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   87 (248)
T 3u2s_H            8 GGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMNSLRV   87 (248)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCCCH
Confidence            4578899999999998652  345799997431100                    0011 11     122499999999


Q ss_pred             CCCeEEEEEeec
Q psy7616          71 HQAGVYQCTATN   82 (147)
Q Consensus        71 ~~~g~y~C~~~~   82 (147)
                      .|+|.|.|.+.+
T Consensus        88 ~DsG~Y~C~~~~   99 (248)
T 3u2s_H           88 EDTATYFCVREA   99 (248)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             HHCEEEEEEEeC
Confidence            999999999875

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.93  E-value=2.4e-09  Score=60.25  Aligned_cols=82  Identities=16%  Similarity=0.244  Sum_probs=56.5

Q ss_pred             ceEEeeCCeEEEEEee-cCCCCCceEEEecCCC----------------CCCCceee-eccceEEEeecCCCCeEEEEEe
Q psy7616          19 QLTVRKGGTITLECKA-SGNPVPSIIWSKKDSS----------------LPSGEKSL-EGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~----------------~~~~~~~~-~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      .+.+..|++++|.|.. .......+.|++....                ........ .+.+|.|.+++..|+|.|.|.+
T Consensus        13 pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~sL~I~nv~~~DsG~Y~c~v   92 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSGALYISKVQKEDNSTYIMRV   92 (121)
T ss_dssp             CCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTCCEEESSCCGGGCSEEEEEE
T ss_pred             EEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCceEEEeCCCHHHCeEEEEEE
Confidence            4578899999999986 3333457999997531                00111122 4568999999999999999999


Q ss_pred             ecCCCCceEEeEEEEEeeee
Q psy7616          81 TNGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~  100 (147)
                      .+..+......+.|.|..++
T Consensus        93 ~~~~~~~~~~~~~L~V~~~~  112 (121)
T 2edo_A           93 LKKTGNEQEWKIKLQVLDPV  112 (121)
T ss_dssp             EETTTEEEECCEECEEECCS
T ss_pred             EcCCCcEEEEEEEEEEECCC
Confidence            86554333566777776543

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=98.92  E-value=1e-08  Score=56.47  Aligned_cols=65  Identities=17%  Similarity=0.400  Sum_probs=47.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-------------CCce-ee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-------------SGEK-SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-------------~~~~-~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|...+.+.+.+.|++...  .+.             ..+. ..   ....|.|.+++..|+|.|.|.
T Consensus        12 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   91 (109)
T 2q20_A           12 SLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPEDIATYYCQ   91 (109)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChhhCEEEEEE
Confidence            5688899999999999877777899998642  100             0111 11   123689999999999999999


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      +.+.
T Consensus        92 ~~~~   95 (109)
T 2q20_A           92 QYDN   95 (109)
T ss_dssp             ECSS
T ss_pred             EeeC
Confidence            9764

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=98.92  E-value=1.8e-08  Score=63.10  Aligned_cols=79  Identities=19%  Similarity=0.359  Sum_probs=55.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEe--cCCCCC-------------CCce-e---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSK--KDSSLP-------------SGEK-S---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~--~~~~~~-------------~~~~-~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++  ++..+.             .... .   .....|.|.++...|+|.|.|.
T Consensus       144 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  223 (247)
T 2ghw_B          144 TLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEPEDFAVYYCQ  223 (247)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCHHHCEEEEEE
Confidence            4568899999999999988888999999  444331             0011 0   1233599999999999999999


Q ss_pred             eecCCCCceEEeEEEEEe
Q psy7616          80 ATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~   97 (147)
                      +.+.........+.|.|.
T Consensus       224 a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          224 QRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             ECSSSSCEECCCEEEEEC
T ss_pred             EccCCCceEcCCEEEEEC
Confidence            987543333344455554

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.92  E-value=5.7e-09  Score=65.72  Aligned_cols=93  Identities=20%  Similarity=0.323  Sum_probs=61.4

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCC----ceEEEecC--CCCC-------------CCce-ee---eccceE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVP----SIIWSKKD--SSLP-------------SGEK-SL---EGFSIT   64 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~----~v~w~~~~--~~~~-------------~~~~-~~---~~~~l~   64 (147)
                      +|.+...+.  ...+..|+++.|.|.+.+.+.+    .+.|++..  ..+.             .... ..   ....|.
T Consensus       133 ~~~v~~~p~--~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~  210 (253)
T 3uzq_A          133 ELVMTQTPA--SLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLT  210 (253)
T ss_dssp             -CCEEEECS--EEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             cceEECcCC--eEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEE
Confidence            345555554  4688899999999999887766    89999853  2211             0011 01   123599


Q ss_pred             EEeecCCCCeEEEEEeecCCCCceEEeEEEEEeeeecC
Q psy7616          65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP  102 (147)
Q Consensus        65 ~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~~~~  102 (147)
                      |.+++..|+|.|.|.+.+.........+.|.|...+.+
T Consensus       211 I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~~  248 (253)
T 3uzq_A          211 INPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPLEH  248 (253)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC---
T ss_pred             ECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCCCC
Confidence            99999999999999998865554455666777655443

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.91  E-value=1.1e-08  Score=57.88  Aligned_cols=77  Identities=21%  Similarity=0.294  Sum_probs=52.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCC---CceEEEecCCCCC-----------C-------Cc-ee------eeccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNPV---PSIIWSKKDSSLP-----------S-------GE-KS------LEGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~---~~v~w~~~~~~~~-----------~-------~~-~~------~~~~~l~~~~~~~   70 (147)
                      .+....|++++|+|...+...   ..+.|++.+....           .       .+ ..      ....+|.|.+++.
T Consensus        14 ~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~~v~~   93 (125)
T 4gos_A           14 ASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLKNVQL   93 (125)
T ss_dssp             CEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEESSCCG
T ss_pred             eEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEECCCCh
Confidence            457778999999999754332   3589998653210           0       00 00      1134799999999


Q ss_pred             CCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          71 HQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        71 ~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      +|+|.|.|.+.+..+.. ++.+.|.|
T Consensus        94 ~D~G~Y~C~v~~~~g~~-~~~v~LkV  118 (125)
T 4gos_A           94 TDAGTYKCYIITSKGKG-NANLEYKT  118 (125)
T ss_dssp             GGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             HHCEEEEEEEEeCCCeE-EEEEEEEE
Confidence            99999999999876654 56665654

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=98.90  E-value=6.7e-09  Score=65.70  Aligned_cols=84  Identities=25%  Similarity=0.398  Sum_probs=58.1

Q ss_pred             ceEEeeCCeEEEEEee---cCCCCCceEEEecCCCCCCCc------------------------e-----eeeccceEEE
Q psy7616          19 QLTVRKGGTITLECKA---SGNPVPSIIWSKKDSSLPSGE------------------------K-----SLEGFSITLE   66 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~---~~~~~~~v~w~~~~~~~~~~~------------------------~-----~~~~~~l~~~   66 (147)
                      ...+..|+.+.|.|.+   .+.|.+.+.|++++.......                        .     ......|.|.
T Consensus       127 ~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~  206 (268)
T 3mj6_A          127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQ  206 (268)
T ss_dssp             EEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEEC
T ss_pred             ccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEEC
Confidence            5678899999999998   566888999999543221000                        0     1235579999


Q ss_pred             eecCCCCeEEEEEeecCCCCceEEeEEEEEe-eeecCC
Q psy7616          67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEVL-CKILPS  103 (147)
Q Consensus        67 ~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~-~~~~~~  103 (147)
                      ++...|+|.|.|.+.|..+. ....+.|.+. .+|.+.
T Consensus       207 ~v~~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~~~p~~~  243 (268)
T 3mj6_A          207 TVKESDQGIYTCSIYVGKLE-SRKTIVLHVVQDEFQRT  243 (268)
T ss_dssp             SCCGGGCEEEEEEEEETTEE-EEEEEEEEEECC-----
T ss_pred             cCChhhCeEEEEEEEcCCce-EEEEEEEEEEcCCCeee
Confidence            99999999999999997665 3666777773 344333

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=98.90  E-value=1.9e-09  Score=65.84  Aligned_cols=81  Identities=20%  Similarity=0.198  Sum_probs=54.5

Q ss_pred             EEeeCCeEEEEEeecCCC-C--CceEEEecCCCCCCCce---------eeeccceEEEeecCCCCeEEEEEeecCCCCc-
Q psy7616          21 TVRKGGTITLECKASGNP-V--PSIIWSKKDSSLPSGEK---------SLEGFSITLEKVDRHQAGVYQCTATNGVGDP-   87 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~-~--~~v~w~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~-   87 (147)
                      .+..|+.+.|.|.+.+.+ .  +.+.|++++..+.....         ......|.+......|.|.|.|.+.+..+.. 
T Consensus       102 ~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~~  181 (202)
T 1vca_A          102 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD  181 (202)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCT
T ss_pred             EEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCCC
Confidence            578999999999987653 3  36899999876532211         1112335566677778889999999876541 


Q ss_pred             -----eEEeEEEEEeeeec
Q psy7616          88 -----VTVDMTLEVLCKIL  101 (147)
Q Consensus        88 -----~~~~~~l~v~~~~~  101 (147)
                           .+..+.|.|..+|.
T Consensus       182 ~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          182 SVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             TSCSEEEEEEECCEECCC-
T ss_pred             CcceeEeeEEEEEEecCCC
Confidence                 34566677776664

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=98.89  E-value=2.5e-08  Score=62.81  Aligned_cols=64  Identities=22%  Similarity=0.515  Sum_probs=46.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCC--C-----------------CCCceee----eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSS--L-----------------PSGEKSL----EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~--~-----------------~~~~~~~----~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|+.+.|.|.... +.+.+.|++....  .                 .......    ....|.|.+++..|+|.
T Consensus        12 ~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~~D~G~   90 (252)
T 1oga_E           12 YLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF   90 (252)
T ss_dssp             EEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred             eEEEcCCCcEEEEEEeCC-CCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECcCChhhCEE
Confidence            568899999999999853 5778999985311  0                 0001111    13479999999999999


Q ss_pred             EEEEeecC
Q psy7616          76 YQCTATNG   83 (147)
Q Consensus        76 y~C~~~~~   83 (147)
                      |.|.+.+.
T Consensus        91 Y~C~~~~~   98 (252)
T 1oga_E           91 YLCASSSR   98 (252)
T ss_dssp             EEEEEESS
T ss_pred             EEEEEecC
Confidence            99998774

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=98.88  E-value=1.6e-08  Score=72.72  Aligned_cols=122  Identities=13%  Similarity=0.170  Sum_probs=72.3

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCCce----e----eeccceEEEeecCCCCeEEEEEeecCCC------C----
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEK----S----LEGFSITLEKVDRHQAGVYQCTATNGVG------D----   86 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~----~----~~~~~l~~~~~~~~~~g~y~C~~~~~~~------~----   86 (147)
                      ...+.+.|.+.|.|.+.+.|.+++........    .    .....+.+..+...+.|.+.|.......      .    
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~~  170 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLR  170 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSSCEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEECC
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCceeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccccccccc
Confidence            34789999999999999999999977643211    0    1112355555556666666653221000      0    


Q ss_pred             --c------eEEeEEEEEe--eeecCC-CC--cc-----------cc----CCceEEeecCCCCCeEEEEEeecCCCCCc
Q psy7616          87 --P------VTVDMTLEVL--CKILPS-GE--KS-----------LE----GFSITLEKVDRHQAGVYQCTATNGVGDPV  138 (147)
Q Consensus        87 --~------~~~~~~l~v~--~~~~~~-~~--~~-----------~~----~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~  138 (147)
                        .      ....+...+.  ..|.+. |.  .+           ..    ...+.+.+++.+|+|.|+|.|.|..|...
T Consensus       171 ~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~  250 (731)
T 2v5y_A          171 IQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGI  250 (731)
T ss_dssp             CCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEE
T ss_pred             ccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCCCCcc
Confidence              0      0111111121  234454 55  22           00    13678899999999999999999999733


Q ss_pred             CeeeEEEE
Q psy7616         139 TVDMTLEV  146 (147)
Q Consensus       139 ~~~~~l~V  146 (147)
                      +..+.|.|
T Consensus       251 s~~~~l~V  258 (731)
T 2v5y_A          251 SNYAELVV  258 (731)
T ss_dssp             CCCEEEEE
T ss_pred             eeeEEEEE
Confidence            55666655

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=98.88  E-value=4.4e-09  Score=65.28  Aligned_cols=64  Identities=19%  Similarity=0.294  Sum_probs=43.4

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCC--CCC-------------------CCceee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDS--SLP-------------------SGEKSL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~--~~~-------------------~~~~~~-----~~~~l~~~~~~~   70 (147)
                      .+.+..|+.++|.|...+.  ....+.|++...  ...                   ......     ....|.|.+++.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~   88 (226)
T 3mlr_H            9 GEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTLQA   88 (226)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSCCG
T ss_pred             CEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCCCc
Confidence            4578899999999998653  345799998431  110                   000011     122499999999


Q ss_pred             CCCeEEEEEeec
Q psy7616          71 HQAGVYQCTATN   82 (147)
Q Consensus        71 ~~~g~y~C~~~~   82 (147)
                      .|+|.|.|.+.+
T Consensus        89 ~DsG~Y~C~~~~  100 (226)
T 3mlr_H           89 SDTGKYFCTRLY  100 (226)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCEEEEEeEcc
Confidence            999999999854

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.87  E-value=2.9e-08  Score=60.40  Aligned_cols=70  Identities=20%  Similarity=0.311  Sum_probs=51.2

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce---e---eeccceEEEeecCCCCeEEEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---S---LEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~---~---~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +|.+...+.   ..+..|+.++|.|.+.+ +.+.+.|++++..+.....   .   .....|.|.+++  |+|.|.|.+.
T Consensus       108 ~p~i~~~p~---~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~  181 (201)
T 1nkr_A          108 KPSLSAQPG---PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGS  181 (201)
T ss_dssp             CCEEEEESC---SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEE
T ss_pred             CCceecCCC---CccCCCCeEEEEEeCCC-CCceEEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEE
Confidence            355555543   26789999999999876 5678999999887653211   1   124578899988  9999999987


Q ss_pred             cC
Q psy7616          82 NG   83 (147)
Q Consensus        82 ~~   83 (147)
                      +.
T Consensus       182 ~~  183 (201)
T 1nkr_A          182 FH  183 (201)
T ss_dssp             ET
T ss_pred             cC
Confidence            53

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=98.87  E-value=1.2e-08  Score=62.48  Aligned_cols=63  Identities=16%  Similarity=0.295  Sum_probs=48.3

Q ss_pred             EeeCCeEEEEEeecCC----CCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          22 VRKGGTITLECKASGN----PVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~----~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      +..|+.+.|.|.+.+.    |.+.+.|++++...... .....+.|.|..+...|.|.|+|.+.|..+
T Consensus       135 ~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~~~~~~-~~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~  201 (214)
T 2zg1_A          135 LESGRPTRLSCSLPGSCEAGPPLTFSWTGNALSPLDP-ETTRSSELTLTPRPEDHGTNLTCQMKRQGA  201 (214)
T ss_dssp             CCTTCCEEEEEECTTCCSCSSCCEEEEESSTTSSSCS-SCCCSSEEEECCCTTCCSCEEEEEEECC--
T ss_pred             ccCCCeEEEEEEeccCCCCCCCceEEEeCCCCccCCC-CceeEEEEEEecccHHcCcEEEEEEEeCCC
Confidence            5689999999998763    77899999988654321 223556788988888899999999999643

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=98.87  E-value=1.9e-08  Score=61.02  Aligned_cols=86  Identities=13%  Similarity=0.130  Sum_probs=51.9

Q ss_pred             ceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCce
Q psy7616          10 SIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV   88 (147)
Q Consensus        10 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~   88 (147)
                      .+.+.|+  ...+..|+.+.++|.... +.+ .+.|...-..... ........+.+.+++ .|.+.|.|.+.... ...
T Consensus         4 ~v~v~P~--~~~V~~G~Sv~l~Cs~~c-~~p~~~~~~t~l~~~~~-~~g~~~~~~~ls~vs-~d~~~~~C~~~c~~-~~~   77 (196)
T 3bn3_B            4 WADLQPR--VAFVERGGSLWLNCSTNC-PRPERGGLETSLRRNGT-QRGLRWLARQLVDIR-EPETQPVCFFRCAR-RTL   77 (196)
T ss_dssp             CEEEESS--EEEEETTEEEEEEEEECC-SSCSEEEEECSSEEEEE-EEETTEEEEEEEEEC-SSEECCEEEEEETT-EEE
T ss_pred             EEEEcCC--CcEEcCCCeEEEEEeCCC-CCCCccEEEEccCCeeE-ccccCceEEEEEEEc-cCCCceEEEEECCC-Cce
Confidence            3444554  567899999999999864 444 6777643211100 001112236778887 67777999976543 334


Q ss_pred             EEeEEEEEeeeec
Q psy7616          89 TVDMTLEVLCKIL  101 (147)
Q Consensus        89 ~~~~~l~v~~~~~  101 (147)
                      ...+.+.+..+|.
T Consensus        78 ~~~v~l~Vy~~P~   90 (196)
T 3bn3_B           78 QARGLIRTFQRPD   90 (196)
T ss_dssp             EEECEEEEEBCCC
T ss_pred             EEEEEEEEecCCC
Confidence            6667777766544

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=98.87  E-value=2.1e-08  Score=56.26  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=53.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC-------------CCce-ee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP-------------SGEK-SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~-------------~~~~-~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.++|.|...+.+.+.+.|++..  ..+.             ..+. ..   ....|.|.+++..|+|.|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   89 (120)
T 1mqk_L           10 SLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQ   89 (120)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHCEEEEEE
Confidence            567889999999999987777789999853  2110             0111 11   133689999999999999999


Q ss_pred             eecCC-CCceEEeEEEEEe
Q psy7616          80 ATNGV-GDPVTVDMTLEVL   97 (147)
Q Consensus        80 ~~~~~-~~~~~~~~~l~v~   97 (147)
                      +.+.. .......+.|.|.
T Consensus        90 ~~~~~~~~~fg~gt~L~V~  108 (120)
T 1mqk_L           90 HHYGTPPLTFGGGTKLEIK  108 (120)
T ss_dssp             ECSSSSSCCBCCCEEEEEC
T ss_pred             EEeCCCceEECCCeEEEEe
Confidence            98753 2222334455554

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=98.87  E-value=2e-08  Score=55.21  Aligned_cols=65  Identities=23%  Similarity=0.422  Sum_probs=47.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-------------CCce-ee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-------------SGEK-SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-------------~~~~-~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|...+.+.+.+.|++...  ...             ..+. ..   ....|.|.+++.+|+|.|.|.
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   89 (108)
T 1qfw_M           10 SMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDFADYHCG   89 (108)
T ss_dssp             CEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCCSEEEEE
T ss_pred             eEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhCEEEEEE
Confidence            4578899999999998876667899998542  110             0011 11   123699999999999999999


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      +.+.
T Consensus        90 ~~~~   93 (108)
T 1qfw_M           90 QTYN   93 (108)
T ss_dssp             ECSS
T ss_pred             EccC
Confidence            9874

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=98.86  E-value=3.4e-08  Score=55.30  Aligned_cols=65  Identities=22%  Similarity=0.472  Sum_probs=47.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-------------CCce-ee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-------------SGEK-SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-------------~~~~-~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|...+.+.+.+.|++...  .+.             ..+. ..   ....|.|.+++.+|+|.|.|.
T Consensus        12 ~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   91 (119)
T 2e27_L           12 SLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPEDAATYYCL   91 (119)
T ss_dssp             EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             eEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChHHCEEEEEE
Confidence            5678999999999999877777899998531  110             0011 11   123689999999999999999


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      +.+.
T Consensus        92 ~~~~   95 (119)
T 2e27_L           92 QYDN   95 (119)
T ss_dssp             ECGG
T ss_pred             EccC
Confidence            8764

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.86  E-value=3.2e-08  Score=56.65  Aligned_cols=83  Identities=23%  Similarity=0.364  Sum_probs=55.8

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEecCCCCC------CC---cee----------eeccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLP------SG---EKS----------LEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~------~~---~~~----------~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+.+..|++++|.|...+. +.+.+.|++......      ..   .+.          .....|.|.+++..|+|.|.|
T Consensus        17 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   96 (136)
T 2d9c_A           17 SVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYYC   96 (136)
T ss_dssp             EEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTTTCEEEEE
T ss_pred             EEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHHHCEEEEE
Confidence            6788999999999998765 456799999763210      00   000          114579999999999999999


Q ss_pred             EeecCCCC---c--eEEeEEEEEeeeec
Q psy7616          79 TATNGVGD---P--VTVDMTLEVLCKIL  101 (147)
Q Consensus        79 ~~~~~~~~---~--~~~~~~l~v~~~~~  101 (147)
                      .+.+....   .  ....+.|.|..+|.
T Consensus        97 ~~~~~~~~~~~~~~~g~~t~L~V~~~~s  124 (136)
T 2d9c_A           97 VKFRKGSPDDVEFKSGAGTELSVRAKPS  124 (136)
T ss_dssp             EEEECCSSSCEEEEECCCEEEEEECCCC
T ss_pred             EEEeCCCCcccceeeCCCeEEEEEeCCC
Confidence            98764321   1  11345677765543

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=98.86  E-value=2e-08  Score=56.56  Aligned_cols=79  Identities=22%  Similarity=0.357  Sum_probs=51.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCC---CceEEEecCCCCCC-------------------Cc-ee------eeccceEEEeec
Q psy7616          19 QLTVRKGGTITLECKASGNPV---PSIIWSKKDSSLPS-------------------GE-KS------LEGFSITLEKVD   69 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~---~~v~w~~~~~~~~~-------------------~~-~~------~~~~~l~~~~~~   69 (147)
                      .+.+..|++++|.|...+.+.   ..+.|++.......                   .+ ..      ....+|.|.+++
T Consensus         9 ~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~   88 (123)
T 4gjt_B            9 VVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRNAV   88 (123)
T ss_dssp             EEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEESCC
T ss_pred             EEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECCCC
Confidence            567889999999999865443   34789985422110                   00 00      112369999999


Q ss_pred             CCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          70 RHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        70 ~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ..|+|.|.|.+.+.........+.|.|.
T Consensus        89 ~~DsG~Y~C~v~t~~~g~~~~~~~L~Vl  116 (123)
T 4gjt_B           89 QADEGEYECRVSTFPAGSFQARLRLRVL  116 (123)
T ss_dssp             SSSCSEEEEEEEESSSCEEEEEEEEEC-
T ss_pred             hHHCEEEEEEEEECCCCeEEeEEEEEEE
Confidence            9999999999876433334566666654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=98.85  E-value=2.1e-08  Score=62.83  Aligned_cols=91  Identities=20%  Similarity=0.297  Sum_probs=54.1

Q ss_pred             eeEEeCCceEEcCCCCceEEeeCCeEEEEEeecC-CCCC-ceEEEecCCCCCCCc----------e-------eeeccce
Q psy7616           3 QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASG-NPVP-SIIWSKKDSSLPSGE----------K-------SLEGFSI   63 (147)
Q Consensus         3 ~~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~w~~~~~~~~~~~----------~-------~~~~~~l   63 (147)
                      +.+..+|.+...+..   ....|+.+.|.|.+.+ .|.+ .+.|++++..+....          .       ......|
T Consensus       114 L~V~~~P~v~~~~~~---~~~~~~~~~L~C~~~g~~P~pi~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L  190 (248)
T 3pv7_A          114 LEVVASPASRLLLDQ---VGMKENEDKYMCESSGFYPEAINITWEKQTQKFPHPIEISEDVITGPTIKNMDGTFNVTSCL  190 (248)
T ss_dssp             EEEEBCCEEEEECC-----------CEEEEEEEEEBSSCCEEEEEEECSSSCSCEEECTTEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEecCCceEEecCC---ccccCCCcEEEEEEccEECCCeEEEEEECCccCCCccccccceeecccEECCCCCEEEEEEE
Confidence            345567777666553   3456778889999988 6888 899999987653210          0       1112346


Q ss_pred             EEEeecCCCCeEEEEEeecCCCCc-eEEeEEEEE
Q psy7616          64 TLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV   96 (147)
Q Consensus        64 ~~~~~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v   96 (147)
                      .+......|.|.|.|.+.|..+.. .+..+.|.|
T Consensus       191 ~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          191 KLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             ECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             EEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            666777788899999999977652 345555555

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=98.84  E-value=3.2e-09  Score=57.96  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=31.3

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        63 ~L~I~~v~~~D~G~Y~C~A~N~~G~~-~~~~~l~V~   97 (103)
T 1wwb_X           63 CLQLDNPTHMNNGDYTLIAKNEYGKD-EKQISAHFM   97 (103)
T ss_dssp             EEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECCS
T ss_pred             EEEECCCCcccCEEEEEEEEeCCCcE-eEEEEEEEC
Confidence            38889999999999999999999988 778888764

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.84  E-value=1e-08  Score=65.00  Aligned_cols=90  Identities=18%  Similarity=0.206  Sum_probs=59.3

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce---e---eeccceEEEeecCCCCeEEEEEeec
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---S---LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~---~---~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      |.+...+..   .+..|++++|.|.+.+. .+.+.|++++..+.....   .   .....|.|.+++  |+|.|.|.+.+
T Consensus       108 P~l~~~p~~---~V~~G~~vtL~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~  181 (257)
T 1b6u_A          108 PSLSAQPGP---TVLAGESVTLSCSSRSS-YDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSF  181 (257)
T ss_dssp             CEEECSSCT---TCBTTCEEEEEEECSSC-CSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEEC
T ss_pred             cceEccCCC---ccCCCCEEEEEEeCCCC-CcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEc
Confidence            455444432   46799999999998764 468999999877643211   1   124578888888  99999999986


Q ss_pred             CC----CCceEEeEEEEEeeeecCCC
Q psy7616          83 GV----GDPVTVDMTLEVLCKILPSG  104 (147)
Q Consensus        83 ~~----~~~~~~~~~l~v~~~~~~~~  104 (147)
                      ..    ....+.++.|.|..+|...+
T Consensus       182 ~~~p~~~s~~S~pl~L~V~g~p~~~~  207 (257)
T 1b6u_A          182 RDSPYEWSNSSDPLLVSVTGNPSNSW  207 (257)
T ss_dssp             SSCTTBBCCCCCCEEECCBCCC----
T ss_pred             CCCCcccccCCCCEEEEEeccCCCCC
Confidence            42    12235567777777666543

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=98.84  E-value=1.7e-08  Score=62.06  Aligned_cols=79  Identities=15%  Similarity=0.229  Sum_probs=52.6

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEec-CCCCCCCcee----eeccceE---EEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKK-DSSLPSGEKS----LEGFSIT---LEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~-~~~~~~~~~~----~~~~~l~---~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      .+..|+.+.|.|.+.+.|.+.+.|+++ +..+......    .....+.   ...+...|.|.|.|.+.|..+.. ...+
T Consensus       127 ~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~-~~~~  205 (222)
T 3sbw_C          127 VDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEE-NHTA  205 (222)
T ss_dssp             EETTTTEEEEEEEEEEBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTE-EEEE
T ss_pred             eecCCCcEEEEEEecCCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccce-eeEE
Confidence            456789999999998889999999998 4433322111    1111111   22455688999999999988774 6677


Q ss_pred             EEEEeeee
Q psy7616          93 TLEVLCKI  100 (147)
Q Consensus        93 ~l~v~~~~  100 (147)
                      .+.+..+|
T Consensus       206 ~l~v~~~p  213 (222)
T 3sbw_C          206 ELVIPELP  213 (222)
T ss_dssp             EEECCCC-
T ss_pred             EEEecCCc
Confidence            77666444

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=98.83  E-value=3.1e-09  Score=57.50  Aligned_cols=37  Identities=27%  Similarity=0.478  Sum_probs=33.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      +..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        64 ~~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~Vv  100 (100)
T 3caf_A           64 HWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDVV  100 (100)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             eEEEEEccCCcCCCEEEEEEEEeCCCEE-EEEEEEEEC
Confidence            3478899999999999999999999987 788998885

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.82  E-value=1.3e-07  Score=57.85  Aligned_cols=64  Identities=23%  Similarity=0.440  Sum_probs=45.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-----------CCce-ee------eccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-----------SGEK-SL------EGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-----------~~~~-~~------~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+.+..|+.+.|.|...+.. +.+.|++...  .+.           ..+. ..      ....|.|.+++..|+|.|.|
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C   88 (207)
T 1ypz_E           10 ALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDSGTYFC   88 (207)
T ss_dssp             EEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGCEEEEE
T ss_pred             eEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHCEEEEE
Confidence            56788999999999987643 4799998542  110           0111 11      12369999999999999999


Q ss_pred             EeecC
Q psy7616          79 TATNG   83 (147)
Q Consensus        79 ~~~~~   83 (147)
                      .+.+.
T Consensus        89 ~~~~~   93 (207)
T 1ypz_E           89 AADTW   93 (207)
T ss_dssp             EEECB
T ss_pred             EEecC
Confidence            98765

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=98.82  E-value=6.4e-09  Score=57.05  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=32.4

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        70 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  105 (106)
T 1nct_A           70 STFEISSVQASDEGNYSVVVENSEGKQ-EAEFTLTIQ  105 (106)
T ss_dssp             EEEEECCCCSSCCSEEEECCBCSSCBC-CEEEEEEEC
T ss_pred             EEEEECcCCchhCEEEEEEEEeCCCeE-EEEEEEEEE
Confidence            468889999999999999999999987 888998884

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=98.82  E-value=7.1e-08  Score=54.92  Aligned_cols=72  Identities=25%  Similarity=0.438  Sum_probs=50.3

Q ss_pred             EcCCCCceEEeeCCeEEEEEeec---CCCCCceEEEecCCCCCC-------------------------------Cce-e
Q psy7616          13 TSPSNGQLTVRKGGTITLECKAS---GNPVPSIIWSKKDSSLPS-------------------------------GEK-S   57 (147)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~C~~~---~~~~~~v~w~~~~~~~~~-------------------------------~~~-~   57 (147)
                      +...+..+.+..|++++|.|...   +.+.+.+.|++.......                               .+. .
T Consensus         7 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~   86 (135)
T 1xt5_A            7 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   86 (135)
T ss_dssp             EECSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEE
T ss_pred             EeCCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEE
Confidence            33333467889999999999864   246678999997543210                               000 0


Q ss_pred             e--eccceEEEeecCCCCeEEEEEeecCC
Q psy7616          58 L--EGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        58 ~--~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .  ....|.|.+++..|+|.|.|.+.+..
T Consensus        87 ~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~  115 (135)
T 1xt5_A           87 ANLAAPTLRLTHVHPQDGGRYWCQVAQWS  115 (135)
T ss_dssp             SCTTSCCEEECSCCGGGCEEEEEEEECSS
T ss_pred             ecCCCCeEEECCCChhhCcEEEEEEEcCC
Confidence            1  12569999999999999999998754

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=98.81  E-value=4.7e-10  Score=70.42  Aligned_cols=78  Identities=14%  Similarity=0.134  Sum_probs=47.9

Q ss_pred             eCCceEEcCCCCceE-EeeCCeEEEEEeecCCC----CCceEEEecCCCCCCCce----------eeeccceEEEeecCC
Q psy7616           7 VPPSIRTSPSNGQLT-VRKGGTITLECKASGNP----VPSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRH   71 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~-~~~g~~~~l~C~~~~~~----~~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~   71 (147)
                      .+|.+.+.++.. .. +..|+.+.|.|.+.+..    ...+.|++++..+.....          ....+.|.|......
T Consensus        21 ~~P~v~i~~ps~-~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~   99 (240)
T 4acp_A           21 GGPSVFLFPPKP-KDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWL   99 (240)
T ss_dssp             --CEEEEECCCH-HHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECCCEECCCEEC---CEEEEEEEECCHHHHH
T ss_pred             CCCEEEEECcCh-HHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCCceeccceECCCCeEEEEEEEEEechhcc
Confidence            356665555432 12 44699999999998864    236999999877532211          111234555555555


Q ss_pred             CCeEEEEEeecCCC
Q psy7616          72 QAGVYQCTATNGVG   85 (147)
Q Consensus        72 ~~g~y~C~~~~~~~   85 (147)
                      +.|.|.|.+.+..+
T Consensus       100 d~~~YtC~v~h~~~  113 (240)
T 4acp_A          100 NGKEYKCKVSNKAL  113 (240)
T ss_dssp             HTCCEEEEEECC--
T ss_pred             CCCEEEEEEEcCCC
Confidence            67899999998654

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.81  E-value=4.5e-08  Score=53.67  Aligned_cols=87  Identities=20%  Similarity=0.265  Sum_probs=59.6

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCC---CCce----eeeccceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP---SGEK----SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~---~~~~----~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+|.+...|..   .+..|++++|.|.... ....+.|++++....   ....    ......+.|..++..|+|.|.|.
T Consensus         8 pkPsL~a~P~~---vv~~G~~VtL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~~~~f~i~~vt~~~aG~Y~C~   83 (106)
T 3kgr_A            8 PRPSISAEPGT---VIPLGSHVTFVCRGPV-GVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRCI   83 (106)
T ss_dssp             CCCEEEEESCS---EEETTCCEEEEEEECT-TCCEEEEEEGGGTEEEEECCCEEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEEeCCC---ccCCCCeEEEEEEccC-CCcEEEEEECCCccccccccccccCCCCcceEEEecCCCcCCCceEEEE
Confidence            46777777753   7889999999998764 345799999886541   1111    12345688899999999999999


Q ss_pred             eecCC-CCceEEeEEEEEe
Q psy7616          80 ATNGV-GDPVTVDMTLEVL   97 (147)
Q Consensus        80 ~~~~~-~~~~~~~~~l~v~   97 (147)
                      ..+.. ....+.++.|.|.
T Consensus        84 ~~~~~~~S~~Sdpl~L~Vt  102 (106)
T 3kgr_A           84 YYKPPKWSEQSDYLELLVK  102 (106)
T ss_dssp             EEETTEECCCCCCEEEEEE
T ss_pred             eeCCCcccCCCCCEEEEEe
Confidence            87642 2223455555554

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=98.81  E-value=2.5e-08  Score=62.88  Aligned_cols=81  Identities=20%  Similarity=0.330  Sum_probs=55.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCC-ceEEEecC--CCCCC-------------Cce-ee---eccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVP-SIIWSKKD--SSLPS-------------GEK-SL---EGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~--~~~~~-------------~~~-~~---~~~~l~~~~~~~~~~g~y~C   78 (147)
                      ...+..|+.++|.|.+.+.+.+ .+.|++..  ..+..             ... ..   ....|.|.+++..|+|.|.|
T Consensus       150 ~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C  229 (257)
T 3gkz_A          150 IMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSMEAEDAASYFC  229 (257)
T ss_dssp             EEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             eEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCChHHCEEEEE
Confidence            5688899999999999887776 89999842  22110             000 01   12359999999999999999


Q ss_pred             EeecCCCCceEEeEEEEEeee
Q psy7616          79 TATNGVGDPVTVDMTLEVLCK   99 (147)
Q Consensus        79 ~~~~~~~~~~~~~~~l~v~~~   99 (147)
                      .+.+.........+.|.+...
T Consensus       230 ~~~~~~~~~fg~gt~l~v~~~  250 (257)
T 3gkz_A          230 HQWSSFPFTFGSGTKLEIKRA  250 (257)
T ss_dssp             EECSSSSCEECCCEEEEECCC
T ss_pred             EEccCCceEEcCCEEEEEEeC
Confidence            998754443344555665543

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=98.81  E-value=4.7e-09  Score=55.89  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=32.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...+.+.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        49 ~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~   86 (91)
T 3bfo_A           49 KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID   86 (91)
T ss_dssp             SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             CCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEEEEe
Confidence            45789999999999999999999999765677887763

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.81  E-value=5.3e-08  Score=54.60  Aligned_cols=82  Identities=21%  Similarity=0.273  Sum_probs=52.7

Q ss_pred             ceEEeeCCeEEEEEeecCC----CCCceEEEecCCCC-C--------------------CCc-ee-----eeccceEEEe
Q psy7616          19 QLTVRKGGTITLECKASGN----PVPSIIWSKKDSSL-P--------------------SGE-KS-----LEGFSITLEK   67 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~----~~~~v~w~~~~~~~-~--------------------~~~-~~-----~~~~~l~~~~   67 (147)
                      .+.+..|+.+.|.|.....    ....+.|++....- .                    ..+ ..     .....|.|.+
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (124)
T 1neu_A            8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHN   87 (124)
T ss_dssp             EEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECS
T ss_pred             eEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEEcc
Confidence            5678899999999997532    45679999854310 0                    000 01     1234799999


Q ss_pred             ecCCCCeEEEEEeecCCCC-ceEEeEEEEEeeee
Q psy7616          68 VDRHQAGVYQCTATNGVGD-PVTVDMTLEVLCKI  100 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~~~~-~~~~~~~l~v~~~~  100 (147)
                      ++..|+|.|.|.+.+..+. .....+.|.|...|
T Consensus        88 v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p  121 (124)
T 1neu_A           88 LDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV  121 (124)
T ss_dssp             CCGGGCEEEEEEEEC----CCEEEEEEEEEEC--
T ss_pred             CChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCC
Confidence            9999999999999886554 23556677776554

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=7.5e-09  Score=55.98  Aligned_cols=37  Identities=24%  Similarity=0.507  Sum_probs=32.8

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ....|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        60 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V   96 (100)
T 2edj_A           60 EQGTLQIKNLRISDTGTYTCVATSSSGET-SWSAVLDV   96 (100)
T ss_dssp             TTCCEEEESCCTTTCCEEEEEEECSSCCC-BCCEEEEE
T ss_pred             CCCEEEEccCCcccCEEEEEEEEcCCCCE-EEEEEEEE
Confidence            35579999999999999999999999988 77888877

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=7.9e-09  Score=57.69  Aligned_cols=35  Identities=14%  Similarity=0.248  Sum_probs=31.1

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        80 ~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  114 (118)
T 2e7c_A           80 VFFVRQAARSDSGEYELSVQIENMKD-TATIRIRVV  114 (118)
T ss_dssp             EEEESSCCTTTCEEEEEEEECSSCEE-CCEEEEEEE
T ss_pred             EEEECCCChhcCEEEEEEEEeCCCeE-EEEEEEEEE
Confidence            48889999999999999999999977 778888773

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.81  E-value=4.6e-09  Score=56.74  Aligned_cols=36  Identities=19%  Similarity=0.379  Sum_probs=31.9

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        64 ~~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~   99 (99)
T 2yr3_A           64 AELHIQDALPEDHGTYTCLAENALGQV-SCSAWVTVH   99 (99)
T ss_dssp             EEEEECSCCTTCCBCEEEEEECSSCEE-EEECCEEEC
T ss_pred             EEEEECCCChhhCEEEEEEEEECCCeE-EEEEEEEEC
Confidence            468889999999999999999999987 778888873

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=98.80  E-value=6.4e-08  Score=53.06  Aligned_cols=65  Identities=22%  Similarity=0.387  Sum_probs=47.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC-------------CCce-ee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP-------------SGEK-SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~-------------~~~~-~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|...+.+.+.+.|++..  ..+.             ..+. ..   ....|.|.+++.+|+|.|.|.
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   89 (107)
T 1i8k_A           10 SLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCL   89 (107)
T ss_dssp             EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHCEEEEEE
Confidence            457889999999999887677789999853  1110             0011 11   123689999999999999999


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      +.+.
T Consensus        90 ~~~~   93 (107)
T 1i8k_A           90 QSFN   93 (107)
T ss_dssp             ECSS
T ss_pred             EeeC
Confidence            8764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.80  E-value=3.9e-08  Score=61.99  Aligned_cols=85  Identities=18%  Similarity=0.361  Sum_probs=56.0

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCC-CceEEEec--CCCCC-------------CCce-ee---eccceEEEee
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPV-PSIIWSKK--DSSLP-------------SGEK-SL---EGFSITLEKV   68 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~w~~~--~~~~~-------------~~~~-~~---~~~~l~~~~~   68 (147)
                      +.+...+.  ...+..|++++|.|.+.+.+. +.+.|++.  +..+.             .... ..   ....|.|.++
T Consensus       150 ~~~~~~~~--~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  227 (256)
T 3juy_B          150 IVLTQAPG--TLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRV  227 (256)
T ss_dssp             CCEEEECS--EEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             eEEEecCC--eEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCC
Confidence            34444444  568889999999999988765 78999983  22211             0010 11   1235999999


Q ss_pred             cCCCCeEEEEEeecCCCCceEEeEEEE
Q psy7616          69 DRHQAGVYQCTATNGVGDPVTVDMTLE   95 (147)
Q Consensus        69 ~~~~~g~y~C~~~~~~~~~~~~~~~l~   95 (147)
                      +..|+|.|.|.+.+.........+.|.
T Consensus       228 ~~~DsG~Y~C~~~~~~~~~~g~gt~l~  254 (256)
T 3juy_B          228 EPEDFALYYCQVYGASSYTFGQGTKLE  254 (256)
T ss_dssp             CGGGCSEEEEEECCSSCCEECCCEEEE
T ss_pred             CHhHCEEEEEEEeeCCCceEcCCEEEE
Confidence            999999999999885443333344443

>3iu4_H CHP3 FAB heavy chain; antibody, ganglioside, idiotype, immune system; 1.75A {Mus musculus} PDB: 1ibg_H* 3iy6_B

Probab=98.80  E-value=7.3e-09  Score=65.82  Aligned_cols=64  Identities=14%  Similarity=0.324  Sum_probs=43.7

Q ss_pred             eEEeeCCeEEEEEeecCCC--CCceEEEecCC--CCC-----------------CCce-ee-----eccceEEEeecCCC
Q psy7616          20 LTVRKGGTITLECKASGNP--VPSIIWSKKDS--SLP-----------------SGEK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~--~~~-----------------~~~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      +.+..|+.++|.|...+..  ...+.|++...  ...                 ..+. ..     ....|.|.+++..|
T Consensus        10 v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~D   89 (263)
T 3iu4_H           10 GLVAPSQSLSITCTVSGFSLSRYSVHWVRQPPGKGLEWLGMIWGGGSTDYNSALKSRLSISKDNSKSQVFLKMNSLQTDD   89 (263)
T ss_dssp             SEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCEEECGGGTTCEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             EEEcCCCCEEEEEEeccccCCceEEEEEEECCCCCcEEEEEEeCCCcEeeCcccCCCEEEEecCCCCEEEEEECCCCHHH
Confidence            4788999999999986533  45799997431  110                 0000 11     11249999999999


Q ss_pred             CeEEEEEeecC
Q psy7616          73 AGVYQCTATNG   83 (147)
Q Consensus        73 ~g~y~C~~~~~   83 (147)
                      +|.|.|.+.+.
T Consensus        90 sG~Y~C~~~~~  100 (263)
T 3iu4_H           90 TAMYYCARSGV  100 (263)
T ss_dssp             CEEEEEEEEEC
T ss_pred             CEEEEEEEEeC
Confidence            99999998754

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.80  E-value=5.7e-08  Score=62.18  Aligned_cols=78  Identities=19%  Similarity=0.359  Sum_probs=54.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEe--cCCCCC-------------CCcee----eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSK--KDSSLP-------------SGEKS----LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~--~~~~~~-------------~~~~~----~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|.+.+.+ +.+.|++  ++..+.             .....    .....|.|.++...|+|.|.|.
T Consensus       171 ~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  249 (282)
T 1qok_A          171 IMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEAEDAATYYCQ  249 (282)
T ss_dssp             EEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCChhHCEEEEEE
Confidence            45788999999999998878 8999999  444331             01111    1233689999999999999999


Q ss_pred             eecCCCCceEEeEEEEEe
Q psy7616          80 ATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~   97 (147)
                      +.+.........+.|.|.
T Consensus       250 a~~~~~~~fg~gt~l~V~  267 (282)
T 1qok_A          250 QRSSYPLTFGAGTKLELK  267 (282)
T ss_dssp             ECSSSSCEECCCEEEEEC
T ss_pred             EeeCCCceEeCCEEEEEe
Confidence            987543333344555554

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=98.79  E-value=1.8e-09  Score=66.17  Aligned_cols=77  Identities=21%  Similarity=0.399  Sum_probs=53.6

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCc----------eeeeccceEEEeecCCCCe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGE----------KSLEGFSITLEKVDRHQAG   74 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~g   74 (147)
                      .+|.+...+...  .+..|+.+.|.|.+.+. |. +.+.|++++..+....          .....+.|.|..+...|.|
T Consensus       113 ~~P~i~~~~~~~--~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  190 (213)
T 3mj8_L          113 AAPSVTLFPPSS--EELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPSKSDSKYMATSYLTMTADAWKSRN  190 (213)
T ss_dssp             BCCEEEEECCCH--HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEEETTEEEEEEEEEEESHHHHSCS
T ss_pred             CCCeEEccCCCc--ccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcCccCCcEEEEEEEEEeHHHcCCCC
Confidence            455565554422  33369999999998874 33 4899999988764321          1112345788888889999


Q ss_pred             EEEEEeecCCC
Q psy7616          75 VYQCTATNGVG   85 (147)
Q Consensus        75 ~y~C~~~~~~~   85 (147)
                      .|.|.+.|..+
T Consensus       191 ~Y~C~a~n~~~  201 (213)
T 3mj8_L          191 TFICKVTHGGN  201 (213)
T ss_dssp             CEEEEEEETTE
T ss_pred             EEEEEEEECCc
Confidence            99999999764

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.79  E-value=6.6e-08  Score=53.52  Aligned_cols=65  Identities=23%  Similarity=0.446  Sum_probs=46.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-----------CCce-ee------eccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-----------SGEK-SL------EGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-----------~~~~-~~------~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+.+..|++++|.|...+.+ +.+.|++...  .+.           .... ..      ....|.|.+++..|+|.|.|
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   88 (113)
T 1h5b_A           10 ALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC   88 (113)
T ss_dssp             EEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhhCEEEEE
Confidence            45788999999999987644 6899998542  110           0011 11      12269999999999999999


Q ss_pred             EeecCC
Q psy7616          79 TATNGV   84 (147)
Q Consensus        79 ~~~~~~   84 (147)
                      .+.+..
T Consensus        89 ~~~n~~   94 (113)
T 1h5b_A           89 AAEASS   94 (113)
T ss_dssp             EEECSS
T ss_pred             EEecCC
Confidence            998754

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=98.78  E-value=3.7e-09  Score=56.49  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=31.8

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        58 ~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   93 (93)
T 1wit_A           58 TSIFFPSAKRADSGNYKLKVKNELGED-EAIFEVIVQ   93 (93)
T ss_dssp             EEEECTTBCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             EEEEECCCChhcCEEEEEEEEcCCCeE-EEEEEEEEC
Confidence            457788999999999999999999977 888888874

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=98.78  E-value=8.3e-09  Score=55.65  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=30.5

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        63 ~L~i~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V   96 (99)
T 1g1c_A           63 ELVIRDVTGEDSASIMVKAINIAGET-SSHAFLLV   96 (99)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEECCCCcCCCEEEEEEEEECCCcE-EEEEEEEE
Confidence            58889999999999999999999988 67788876

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=98.77  E-value=8.9e-08  Score=54.11  Aligned_cols=80  Identities=23%  Similarity=0.360  Sum_probs=53.5

Q ss_pred             ceEEeeCCeEEEEEeecCCC----CCceEEEecCC--CCC-------------CCce-e---eeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNP----VPSIIWSKKDS--SLP-------------SGEK-S---LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~~~--~~~-------------~~~~-~---~~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|++++|.|...+.+    .+.+.|++...  ...             ..+. .   .....|.|.+++..|+|.
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v~~~DsG~   89 (126)
T 4ffy_L           10 SLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSVETDDAAT   89 (126)
T ss_dssp             EEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCCCHHHCEE
Confidence            56889999999999987765    45799998531  110             0000 1   123368999999999999


Q ss_pred             EEEEeecCCCCceEEeEEEEEee
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~   98 (147)
                      |.|.+.+.........+.|.|..
T Consensus        90 Y~C~~~~~~~~~fg~gT~L~V~~  112 (126)
T 4ffy_L           90 YYCQQNNEDPYTFGGGTKLEIKG  112 (126)
T ss_dssp             EEEEECSSSSCEECCCEEEEEEC
T ss_pred             EEEEEecCCCcEECCCEEEEEec
Confidence            99999875433233445555553

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.76  E-value=7.9e-08  Score=53.07  Aligned_cols=65  Identities=18%  Similarity=0.430  Sum_probs=47.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCC--C--------------CCCceee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSS--L--------------PSGEKSL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~--~--------------~~~~~~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|...+.+.+.+.|++....  .              .......   ....|.|.+++.+|+|.|.|.
T Consensus        13 ~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   92 (111)
T 1i3g_L           13 FMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSEDLADYFCQ   92 (111)
T ss_dssp             EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHHHCEEEEEE
Confidence            56788999999999987766678999986421  1              0000111   123689999999999999999


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      +.+.
T Consensus        93 ~~~~   96 (111)
T 1i3g_L           93 QYSS   96 (111)
T ss_dssp             ECSS
T ss_pred             EecC
Confidence            8764

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=98.76  E-value=1.1e-08  Score=61.13  Aligned_cols=59  Identities=17%  Similarity=0.152  Sum_probs=46.7

Q ss_pred             eeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          23 RKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      ..+..+.|.|.+.+.|.+.+.|++++..+..      ...+.+..+...|+|.|.|.+.|..+..
T Consensus       108 ~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~------~~~~~i~~~~~~d~G~Y~C~a~N~~g~~  166 (176)
T 1hng_A          108 WECSNATLTCEVLEGTDVELKLYQGKEHLRS------LRQKTMSYQWTNLRAPFKCKAVNRVSQE  166 (176)
T ss_dssp             EETTTTEEEEECSSCSSCEEEEEETTEEEEE------ESSSEEEEECSCCSSCEEEEEEETTEEE
T ss_pred             ecCCcEEEEEEecCCCCcEEEEEECCEECCC------CCcEEEEEEEccCCeEEEEEEEecCCCc
Confidence            3455699999999989999999998865532      2235566888999999999999987654

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=98.75  E-value=8.6e-09  Score=55.68  Aligned_cols=35  Identities=40%  Similarity=0.695  Sum_probs=31.5

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        63 ~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~   97 (100)
T 2kdg_A           63 SLIFEVVRASDAGAYACVAKNRAGEA-TFTVQLDVL   97 (100)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEcCCCeE-EEEEEEEEE
Confidence            68889999999999999999999987 778888773

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.75  E-value=3.7e-07  Score=58.87  Aligned_cols=79  Identities=14%  Similarity=0.104  Sum_probs=46.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCc-eEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~-v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ...+..|+.+.|+|.... +.+. +.|...-..............+.+.++..  .+.|.|.+.... ......+.+.+.
T Consensus         8 ~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~--~~~y~C~~~~~~-~~~~~~v~l~V~   83 (291)
T 1mq8_A            8 KVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNNRKVYELSNVQE--DSQPMCYSNCPD-GQSTAKTFLTVY   83 (291)
T ss_dssp             EEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCS--CCCCEEEEECSS-CEEEEECEEEEC
T ss_pred             ccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccccCCCceEEEEEEeccc--CCeEEEEEEcCC-ccEEEEEEEEEe
Confidence            558899999999999864 4444 88875321111100011112356666653  357999986543 334666677776


Q ss_pred             eeec
Q psy7616          98 CKIL  101 (147)
Q Consensus        98 ~~~~  101 (147)
                      .+|.
T Consensus        84 ~~P~   87 (291)
T 1mq8_A           84 WTPE   87 (291)
T ss_dssp             BCCS
T ss_pred             cCCC
Confidence            5544

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=98.75  E-value=1.1e-08  Score=55.62  Aligned_cols=34  Identities=24%  Similarity=0.414  Sum_probs=30.5

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        65 ~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   98 (103)
T 3qp3_A           65 TLEILDCHTDDSGTYRAVCTNYKGEA-SDYATLDV   98 (103)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEcCCCcccCEEEEEEEEeCCCcE-EEEEEEEE
Confidence            58889999999999999999999988 77888876

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=98.75  E-value=1.3e-08  Score=54.87  Aligned_cols=34  Identities=32%  Similarity=0.589  Sum_probs=30.6

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        63 ~L~i~~~~~~D~G~Y~C~a~N~~g~~-~~~~~l~V   96 (99)
T 1u2h_A           63 RLRILAAERGDAGFYTCKAVNEYGAR-QCEARLEV   96 (99)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEccCCcCCCEEEEEEEEECCCce-eEEEEEEE
Confidence            58889999999999999999999987 77788877

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.75  E-value=3.9e-08  Score=55.67  Aligned_cols=66  Identities=24%  Similarity=0.459  Sum_probs=48.1

Q ss_pred             CceEEeeCCeEEEEEeecCC-CCCceEEEecCCCCC-----C-C----cee---------eeccceEEEeecCCCCeEEE
Q psy7616          18 GQLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLP-----S-G----EKS---------LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        18 ~~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~-----~-~----~~~---------~~~~~l~~~~~~~~~~g~y~   77 (147)
                      ..+.+..|++++|.|...+. +.+.+.|++......     . .    ...         .....|.|.+++..|+|.|.
T Consensus        11 ~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   90 (127)
T 2jju_A           11 KSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADAGTYY   90 (127)
T ss_dssp             SEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGCEEEE
T ss_pred             CeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHCEEEE
Confidence            36788999999999998765 456899999753210     0 0    000         12447999999999999999


Q ss_pred             EEeecC
Q psy7616          78 CTATNG   83 (147)
Q Consensus        78 C~~~~~   83 (147)
                      |.+.+.
T Consensus        91 C~~~~~   96 (127)
T 2jju_A           91 CVKFRK   96 (127)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            998764

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.74  E-value=1e-07  Score=52.80  Aligned_cols=78  Identities=22%  Similarity=0.314  Sum_probs=51.5

Q ss_pred             ceEEeeCCeEEEEEeecC-CCCCceEEEecCCC----C------C--------CCce------eeeccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDSS----L------P--------SGEK------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~----~------~--------~~~~------~~~~~~l~~~~~~~~~~   73 (147)
                      .+.+..|+.++|.|.... .....+.|++....    .      .        ....      ......|.|.+++..|+
T Consensus         6 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   85 (116)
T 2or8_A            6 EVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDS   85 (116)
T ss_dssp             EEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGC
T ss_pred             eEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccC
Confidence            567889999999999764 34567999997521    0      0        0000      01234699999999999


Q ss_pred             eEEEEEeecCCCCc-eEEeEEEEE
Q psy7616          74 GVYQCTATNGVGDP-VTVDMTLEV   96 (147)
Q Consensus        74 g~y~C~~~~~~~~~-~~~~~~l~v   96 (147)
                      |.|.|.+.+..+.. ....+.|.|
T Consensus        86 G~Y~C~v~~~~~~~~~~~~~~l~V  109 (116)
T 2or8_A           86 GLYCCRVEIPGWFNDQKVTFSLQV  109 (116)
T ss_dssp             EEEEEEECCSSTTCCEEEEEEEEE
T ss_pred             EEEEEEEEcCCcccccEEEEEEEE
Confidence            99999998754332 234444444

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=98.74  E-value=1.1e-08  Score=55.13  Aligned_cols=38  Identities=29%  Similarity=0.318  Sum_probs=33.1

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        60 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~   97 (98)
T 1gl4_B           60 FNGILTIRNVQPSDAGTYVCTGSNMFAMD-QGTATLHVQ   97 (98)
T ss_dssp             ETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             CCCEEEEeCCChhhCEEEEEEecCCCCcc-ccEEEEEEe
Confidence            35679999999999999999999999987 778888773

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=98.74  E-value=4.2e-08  Score=60.64  Aligned_cols=78  Identities=21%  Similarity=0.306  Sum_probs=49.9

Q ss_pred             ceEEeeCCeEEEEEeecC-CCCCceEEEecCCCC-CCCce--ee-ecc---ceEEEeecCCCCeEEEEEeecCCCCceEE
Q psy7616          19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDSSL-PSGEK--SL-EGF---SITLEKVDRHQAGVYQCTATNGVGDPVTV   90 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~-~~~~~--~~-~~~---~l~~~~~~~~~~g~y~C~~~~~~~~~~~~   90 (147)
                      ...+..|+.+.+.|.+.+ .|.|.+.|+++++.. .....  .. ..+   .+.+..++..|+|.|+|.+.|..+.. ..
T Consensus       127 ~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~-~~  205 (226)
T 4f80_A          127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGL-EK  205 (226)
T ss_dssp             EEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTE-EE
T ss_pred             eeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCe-EE
Confidence            346778999999999877 488999999866543 22111  11 111   12344677889999999999988774 66


Q ss_pred             eEEEEEe
Q psy7616          91 DMTLEVL   97 (147)
Q Consensus        91 ~~~l~v~   97 (147)
                      .+.+.+.
T Consensus       206 ~~~v~v~  212 (226)
T 4f80_A          206 TASISIA  212 (226)
T ss_dssp             EEEECCC
T ss_pred             EEEEEEC
Confidence            6666543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.73  E-value=1.3e-08  Score=64.27  Aligned_cols=66  Identities=20%  Similarity=0.352  Sum_probs=49.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEe--cCCCCC-------------CCce-e---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSK--KDSSLP-------------SGEK-S---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~--~~~~~~-------------~~~~-~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++  ++..+.             .... .   .....|.|.++...|+|.|.|.
T Consensus       148 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~  227 (257)
T 1f3r_B          148 LLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCY  227 (257)
T ss_dssp             EECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEE
T ss_pred             EEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhCEEEEEE
Confidence            4457789999999999888878999999  444331             0111 1   1233699999999999999999


Q ss_pred             eecCC
Q psy7616          80 ATNGV   84 (147)
Q Consensus        80 ~~~~~   84 (147)
                      +.|..
T Consensus       228 a~n~~  232 (257)
T 1f3r_B          228 QYNNG  232 (257)
T ss_dssp             EESSS
T ss_pred             EeCCC
Confidence            98864

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.72  E-value=4.4e-07  Score=58.59  Aligned_cols=68  Identities=16%  Similarity=0.274  Sum_probs=50.8

Q ss_pred             EcCCCCceEEeeCCeEEEEEeecC-------CCCCceEEEecCCCCCCCcee-ee--ccceEEEeecCCCCeEEEEEeec
Q psy7616          13 TSPSNGQLTVRKGGTITLECKASG-------NPVPSIIWSKKDSSLPSGEKS-LE--GFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~C~~~~-------~~~~~v~w~~~~~~~~~~~~~-~~--~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +.|.  ...+..|+++.|.|.+.+       .+.+.+.|.+++..+...... ..  ...|.|.++... .|.|.|.+.+
T Consensus         9 i~P~--~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~~~~~~~~~~~~L~i~~~~~~-~g~Y~C~a~~   85 (303)
T 1i1r_A            9 ISPE--SPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASL-NIQLTCNILT   85 (303)
T ss_dssp             EESS--SCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEETTEEEEEECSCCCS-EEEEEEEEEE
T ss_pred             EccC--CceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChhheeeeCCcEEEEEEcCcCCC-ceEEEEeccc
Confidence            4444  447899999999999874       477899999999877543221 12  246889998877 5999999977


Q ss_pred             C
Q psy7616          83 G   83 (147)
Q Consensus        83 ~   83 (147)
                      .
T Consensus        86 ~   86 (303)
T 1i1r_A           86 F   86 (303)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.72  E-value=1.3e-07  Score=58.80  Aligned_cols=66  Identities=20%  Similarity=0.380  Sum_probs=49.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-------------CCceee------eccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-------------SGEKSL------EGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-------------~~~~~~------~~~~l~~~~~~~~~~g~y~   77 (147)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++..  .+.             ......      ....|.|.++...|+|.|.
T Consensus       136 ~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~  215 (238)
T 2p1y_A          136 SLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYF  215 (238)
T ss_dssp             EEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCGGGCEEEE
T ss_pred             eEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCHHHCEEEE
Confidence            4578899999999999888888999999642  110             001111      1246899999999999999


Q ss_pred             EEeecCC
Q psy7616          78 CTATNGV   84 (147)
Q Consensus        78 C~~~~~~   84 (147)
                      |.+.|..
T Consensus       216 C~a~n~~  222 (238)
T 2p1y_A          216 CAAIDTN  222 (238)
T ss_dssp             EEEEETT
T ss_pred             EEEeeCC
Confidence            9999863

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.71  E-value=1.6e-07  Score=51.62  Aligned_cols=69  Identities=16%  Similarity=0.392  Sum_probs=48.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCC-----ceEEEecCCC-C----C----------C--Cce-e-eeccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNPVP-----SIIWSKKDSS-L----P----------S--GEK-S-LEGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~-----~v~w~~~~~~-~----~----------~--~~~-~-~~~~~l~~~~~~~~~~g   74 (147)
                      .+.+..|+++.|.|...+.+.+     .+.|++.+.. +    .          .  ... . .....|.|.+++..|+|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G   82 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKG   82 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCE
T ss_pred             EEEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCEEEEEcCCChHHCE
Confidence            3577899999999998654433     3999997532 0    0          0  000 1 12457999999999999


Q ss_pred             EEEEEeecCCCCc
Q psy7616          75 VYQCTATNGVGDP   87 (147)
Q Consensus        75 ~y~C~~~~~~~~~   87 (147)
                      .|.|.+.+..+..
T Consensus        83 ~Y~C~v~~~~~~~   95 (110)
T 1ncn_A           83 LYQCIIHHKKPTG   95 (110)
T ss_dssp             EEEEEEEEECSSS
T ss_pred             EEEEEEEcCCCCc
Confidence            9999998866553

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.71  E-value=8.1e-09  Score=57.26  Aligned_cols=37  Identities=22%  Similarity=0.422  Sum_probs=31.7

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        62 ~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~   98 (114)
T 2cqv_A           62 GSKLTILAARQEHCGCYTLLVENKLGSR-QAQVNLTVV   98 (114)
T ss_dssp             EEEEEETTCCTTTCEEEEEEEECSSCEE-ECCEEEEEE
T ss_pred             EEEEEECCCChhcCEEEEEEEEECCCcE-EEEEEEEEE
Confidence            3468889999999999999999999977 667888763

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=98.70  E-value=1e-07  Score=55.26  Aligned_cols=81  Identities=17%  Similarity=0.324  Sum_probs=53.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-------------CCce-ee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-------------SGEK-SL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-------------~~~~-~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|...+.+.+.+.|++...  .+.             ..+. ..   ....|.|.+++..|+|.|.|.
T Consensus        25 ~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~~DsG~Y~C~  104 (146)
T 2yc1_B           25 TLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEPEDFAIYYCQ  104 (146)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCHHHCEEEEEE
Confidence            5688999999999998776667899998542  110             0011 11   123689999999999999999


Q ss_pred             eecCCCCceEEeEEEEEeee
Q psy7616          80 ATNGVGDPVTVDMTLEVLCK   99 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~~   99 (147)
                      +.+.........+.|.|..+
T Consensus       105 ~~~~~~~~fg~GT~L~V~~~  124 (146)
T 2yc1_B          105 QYRYSPRTFGQGTKVEIKRA  124 (146)
T ss_dssp             ECSSSSCEECCCEEEEEC--
T ss_pred             EecCCCCeECCCEEEEEeCC
Confidence            97753222223445555543

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=98.70  E-value=1.9e-08  Score=54.12  Aligned_cols=34  Identities=26%  Similarity=0.587  Sum_probs=30.2

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        63 ~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V   96 (99)
T 3puc_A           63 FLEIHKTDTSDSGLYTCTVKNSAGSV-SSSCKLTI   96 (99)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEeCCCcE-eEEEEEEE
Confidence            58889999999999999999999987 77777766

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=98.70  E-value=2.2e-07  Score=51.37  Aligned_cols=81  Identities=19%  Similarity=0.296  Sum_probs=54.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCC-CceEEEecCCC--C------CC-------Cce-ee-----eccceEEEeecCCCCeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPV-PSIIWSKKDSS--L------PS-------GEK-SL-----EGFSITLEKVDRHQAGVY   76 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~-~~v~w~~~~~~--~------~~-------~~~-~~-----~~~~l~~~~~~~~~~g~y   76 (147)
                      .+.+..|++++|.|...+... ..+.|++....  .      ..       .+. ..     ....|.|.+++..|+|.|
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~DsG~Y   89 (113)
T 1zox_A           10 EVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDAGIY   89 (113)
T ss_dssp             EEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHCEEE
Confidence            568889999999999865433 35999996421  0      00       000 11     123689999999999999


Q ss_pred             EEEeecCCCCceEEeEEEEEeeee
Q psy7616          77 QCTATNGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        77 ~C~~~~~~~~~~~~~~~l~v~~~~  100 (147)
                      .|.+.+.... ....+.|.|...|
T Consensus        90 ~C~v~~~~~~-~~~~v~L~V~~~p  112 (113)
T 1zox_A           90 WCGITKGGLD-PMFKVTVNIGPVP  112 (113)
T ss_dssp             EEEECCSSSC-CEEEEEEEEECC-
T ss_pred             EEeeEcCCCC-ccEEEEEEEEcCC
Confidence            9999876433 3566677665544

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.69  E-value=6.2e-08  Score=53.04  Aligned_cols=77  Identities=16%  Similarity=0.191  Sum_probs=50.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCC---CceEEEecCCCC----------CC--------Cce-e-----eeccceEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASGNPV---PSIIWSKKDSSL----------PS--------GEK-S-----LEGFSITLEKVDRH   71 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~---~~v~w~~~~~~~----------~~--------~~~-~-----~~~~~l~~~~~~~~   71 (147)
                      .+.+..|++++|.|...+.+.   ..+.|++.....          ..        ... .     .....|.|.+++..
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   82 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLD   82 (109)
T ss_dssp             EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGG
T ss_pred             CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCCh
Confidence            356788999999999765432   349999954210          00        000 1     11247999999999


Q ss_pred             CCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          72 QAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        72 ~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      |+|.|.|.+.+..+.. ...+.+.+
T Consensus        83 D~G~Y~C~v~~~~~~~-~~~~~l~V  106 (109)
T 2oyp_A           83 DHGTYCCRIQFPGLMN-DKKLELKL  106 (109)
T ss_dssp             GCEEEEEEECCSSTTC-CEEEEEEE
T ss_pred             hCeEEEEEEEcCCccc-ceEEEEEE
Confidence            9999999998865443 34444443

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=98.69  E-value=1e-07  Score=52.64  Aligned_cols=64  Identities=22%  Similarity=0.523  Sum_probs=46.4

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecC--CCC----C-CCcee------eeccceEEEeecCCCCeEEEEEeec
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKD--SSL----P-SGEKS------LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~--~~~----~-~~~~~------~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+.+..|++++|.|...+.  +.+.+.|++..  ...    . .....      .....|.|.+++.+|+|.|.|.+.+
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~   87 (111)
T 2ywz_A            9 TITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYKCQADY   87 (111)
T ss_dssp             EEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEEEEEEc
Confidence            5678899999999998765  45789999853  111    0 11111      1234699999999999999999987

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.69  E-value=1e-08  Score=56.15  Aligned_cols=37  Identities=22%  Similarity=0.487  Sum_probs=28.4

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        62 ~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V   98 (108)
T 3kvq_A           62 GNRNLTIRRVRKEDEGLYTCQACSVLGCA-KVEAFFII   98 (108)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEC----CE-EEEEEEEE
T ss_pred             CCcEEEEeecCcccCEEEEEEEEeCCCce-EEEEEEEE
Confidence            35678999999999999999999999988 77777776

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.69  E-value=2.5e-07  Score=56.07  Aligned_cols=69  Identities=13%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             eeCCeEEEEEeec-CCCCCceEEEecCCCCCCCcee--e-ec-cce---EEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          23 RKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKS--L-EG-FSI---TLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        23 ~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~~--~-~~-~~l---~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      ..|+.+.|.|.+. +.|.|.+.|++++..+......  . .. ..+   .+..+...|.|.|.|.+.|..+.. ++.+
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~-s~~~  195 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRV-NQTF  195 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCE-EEEE
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCccee-eeEE
Confidence            3477899999985 8899999999998776533211  1 11 221   223455689999999999987764 4443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=98.68  E-value=1.7e-08  Score=61.74  Aligned_cols=77  Identities=19%  Similarity=0.356  Sum_probs=53.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecC-CCCC-ceEEEecCCCCCCC-ce-----------eeeccceEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASG-NPVP-SIIWSKKDSSLPSG-EK-----------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~w~~~~~~~~~~-~~-----------~~~~~~l~~~~~~~~~~   73 (147)
                      +|.+...+...  ....|+.+.|.|.+.+ .|.+ .+.|++++..+... ..           ......|.|.++...|.
T Consensus       112 ~p~v~~~~~~~--~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  189 (213)
T 3d9a_L          112 APTVSIFPPSS--EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH  189 (213)
T ss_dssp             CCEEEEECCCH--HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHC
T ss_pred             CceeEeECCCh--hhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCC
Confidence            55555544321  2336889999999876 4554 79999998776543 11           11233788999999999


Q ss_pred             eEEEEEeecCCCC
Q psy7616          74 GVYQCTATNGVGD   86 (147)
Q Consensus        74 g~y~C~~~~~~~~   86 (147)
                      |.|.|.+.|....
T Consensus       190 G~Y~C~a~n~~~~  202 (213)
T 3d9a_L          190 NSYTCEATHKTST  202 (213)
T ss_dssp             CEEEEEEECTTCS
T ss_pred             CEEEEEEEEccCC
Confidence            9999999996544

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=98.68  E-value=7.6e-09  Score=58.42  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=31.7

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.|.+++..|+|.|+|.|.|.+|.. +.++.|.|+
T Consensus        63 ~~L~i~~~~~~D~G~YtC~A~N~~G~~-~~t~~l~v~   98 (126)
T 1he7_A           63 GCLRLNQPTHVNNGNYTLLAANPFGQA-SASIMAAFM   98 (126)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTEEE-EEEEEECCC
T ss_pred             eEEEECcCCCCCCEEEEEEEEECCCeE-EEEEEEEEE
Confidence            468889999999999999999999988 778887764

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=98.68  E-value=1.8e-08  Score=55.39  Aligned_cols=36  Identities=17%  Similarity=0.316  Sum_probs=32.4

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V  106 (108)
T 3cx2_A           71 LFELHITDAQPAFTGSYRCEVSTKDKFD-CSNFNLTV  106 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             eEEEEEecCCCccCEEEEEEEecCCCce-EEEEEEEE
Confidence            3568889999999999999999999988 88888887

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=98.67  E-value=2.3e-07  Score=59.15  Aligned_cols=65  Identities=23%  Similarity=0.347  Sum_probs=47.7

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCC--CC------------------CCCce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDS--SL------------------PSGEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~--~~------------------~~~~~-~~-----~~~~l~~~~~~~   70 (147)
                      ...+..|+.+.|.|.+.+.+  .+.+.|+++..  .+                  ..... ..     ....|.|.+++.
T Consensus       143 ~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  222 (276)
T 3auv_A          143 GGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQMNSLRA  222 (276)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEEECCCCh
Confidence            55788999999999998765  47899999641  11                  00111 11     122699999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|.+.|.
T Consensus       223 ~DsG~Y~C~a~n~  235 (276)
T 3auv_A          223 EDTAVYYCARFVF  235 (276)
T ss_dssp             GGCEEEEEEEECS
T ss_pred             hHCEEEEEEEEcC
Confidence            9999999999986

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.67  E-value=5.5e-08  Score=54.95  Aligned_cols=76  Identities=21%  Similarity=0.330  Sum_probs=49.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCC----ceEEEecCC----------------CCCC-----Cce-eee-------------
Q psy7616          19 QLTVRKGGTITLECKASGNPVP----SIIWSKKDS----------------SLPS-----GEK-SLE-------------   59 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~----~v~w~~~~~----------------~~~~-----~~~-~~~-------------   59 (147)
                      .+.+..|+.++|.|...+.+.+    .+.|++...                ....     .+. ...             
T Consensus        11 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~~~   90 (128)
T 3r0n_A           11 EVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEAEL   90 (128)
T ss_dssp             EEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCCBC
T ss_pred             eEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEeccccccccccccCC
Confidence            4577889999999998765544    699999521                1111     000 111             


Q ss_pred             -ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEE
Q psy7616          60 -GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        60 -~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l   94 (147)
                       ...|.|.+++..|+|.|.|.+...........+.|
T Consensus        91 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L  126 (128)
T 3r0n_A           91 QDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWL  126 (128)
T ss_dssp             SBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEE
T ss_pred             CCeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEE
Confidence             23799999999999999998765332223444444

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=98.66  E-value=2.6e-08  Score=53.54  Aligned_cols=35  Identities=20%  Similarity=0.424  Sum_probs=31.2

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        59 ~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~   93 (97)
T 2bk8_A           59 ILYVKDITKLDDGTYRCKVVNDYGED-SSYAELFVK   93 (97)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEET
T ss_pred             EEEEecCChhhCeEEEEEEECCCCeE-eEEEEEEEE
Confidence            78889999999999999999999988 768888773

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=98.65  E-value=3.7e-07  Score=50.57  Aligned_cols=65  Identities=20%  Similarity=0.424  Sum_probs=46.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCC------CceEEEecCC--CCC-------------CCce-ee---eccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPV------PSIIWSKKDS--SLP-------------SGEK-SL---EGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~------~~v~w~~~~~--~~~-------------~~~~-~~---~~~~l~~~~~~~~~~   73 (147)
                      .+.+..|+.++|.|...+.+.      +.+.|++...  ...             ..+. ..   ....|.|.+++.+|+
T Consensus        10 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   89 (114)
T 1eeq_A           10 SLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISSLQAEDV   89 (114)
T ss_dssp             EEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECCCCcccC
Confidence            568889999999999877552      6799998541  110             0011 11   123689999999999


Q ss_pred             eEEEEEeecC
Q psy7616          74 GVYQCTATNG   83 (147)
Q Consensus        74 g~y~C~~~~~   83 (147)
                      |.|.|.+.+.
T Consensus        90 G~Y~C~~~~~   99 (114)
T 1eeq_A           90 AVYYCQQYYS   99 (114)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEEeeC
Confidence            9999999764

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=98.65  E-value=4.4e-08  Score=59.86  Aligned_cols=77  Identities=17%  Similarity=0.341  Sum_probs=52.5

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC-ceEEEecCCCCCCC-ce-----------eeeccceEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP-SIIWSKKDSSLPSG-EK-----------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~-~~-----------~~~~~~l~~~~~~~~~~   73 (147)
                      +|.+...+...  ....|+.+.|.|.+.+. |.+ .+.|++++..+... ..           ....+.|.|.++...|+
T Consensus       111 ~P~v~~~~~~~--~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  188 (210)
T 1lk3_L          111 APTVSIFPPST--EQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESH  188 (210)
T ss_dssp             CCEEEEECCCH--HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred             CCeEEEECCch--hhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccC
Confidence            45555444321  22368899999998763 443 79999998876543 11           01123688899999999


Q ss_pred             eEEEEEeecCCCC
Q psy7616          74 GVYQCTATNGVGD   86 (147)
Q Consensus        74 g~y~C~~~~~~~~   86 (147)
                      |.|.|.+.+....
T Consensus       189 G~Y~C~a~n~~~~  201 (210)
T 1lk3_L          189 NLYTCEVVHKTSS  201 (210)
T ss_dssp             CEEEEEEECTTCS
T ss_pred             CcEEEEEEecCCC
Confidence            9999999986543

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=98.65  E-value=1.6e-08  Score=62.02  Aligned_cols=76  Identities=17%  Similarity=0.353  Sum_probs=49.2

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecC-CCCC-ceEEEecCCCCCCCce----------eeeccceEEEeecCCCCeE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASG-NPVP-SIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~~~~-~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~   75 (147)
                      +|.+...+...  ....|+.+.|.|.+.+ .|.+ .+.|++++..+.....          ....+.|.+......|.|.
T Consensus       121 ~P~~~~~~~~~--~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~  198 (218)
T 3s96_B          121 TPTLTVFPPSS--EELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNS  198 (218)
T ss_dssp             CCEEEEECCCH--HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSC
T ss_pred             CceEEeeCCCc--ccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCe
Confidence            45554433321  3345789999999887 4556 7999999887643111          1112336677777778999


Q ss_pred             EEEEeecCCC
Q psy7616          76 YQCTATNGVG   85 (147)
Q Consensus        76 y~C~~~~~~~   85 (147)
                      |.|.+.|..+
T Consensus       199 Y~C~a~n~~~  208 (218)
T 3s96_B          199 FTCQVTHEGD  208 (218)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEeCCC
Confidence            9999999754

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=98.65  E-value=2e-08  Score=56.74  Aligned_cols=37  Identities=27%  Similarity=0.379  Sum_probs=32.2

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.|.++...|+|.|+|+|.|..|.. +.+++|+|.
T Consensus        74 ~~~L~I~~v~~~DaG~Y~Cevsn~~g~~-~~~~~L~V~  110 (126)
T 2dav_A           74 TFEMQIIKAKDNFAGNYRCEVTYKDKFD-SCSFDLEVH  110 (126)
T ss_dssp             EEEEEECSCCTTSCEEEEEEEECSSCEE-EECCEEEEE
T ss_pred             eEEEEEccCCcccCEEEEEEEEeCCCcE-EEEEEEEEE
Confidence            3578899999999999999999999877 778888773

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=98.65  E-value=7.2e-07  Score=61.76  Aligned_cols=65  Identities=25%  Similarity=0.457  Sum_probs=45.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCC----CceEEEecC--CCCC-----------------CCce-ee-----eccceEEEeec
Q psy7616          19 QLTVRKGGTITLECKASGNPV----PSIIWSKKD--SSLP-----------------SGEK-SL-----EGFSITLEKVD   69 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~----~~v~w~~~~--~~~~-----------------~~~~-~~-----~~~~l~~~~~~   69 (147)
                      .+.+..|+.+.|.|...+.+.    ..+.|++..  ..+.                 ..+. ..     ....|.|.+++
T Consensus         9 ~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   88 (512)
T 1zvo_C            9 PGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLRSMS   88 (512)
T ss_pred             CEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEECcCC
Confidence            568889999999999876432    579999852  2110                 0111 11     12479999999


Q ss_pred             CCCCeEEEEEeecC
Q psy7616          70 RHQAGVYQCTATNG   83 (147)
Q Consensus        70 ~~~~g~y~C~~~~~   83 (147)
                      .+|+|.|.|.+.+.
T Consensus        89 ~~Dsg~Y~C~~~~~  102 (512)
T 1zvo_C           89 AADTAMYYCARGNP  102 (512)
T ss_pred             HHHCEEEEEEEECC
Confidence            99999999998764

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.64  E-value=2.2e-07  Score=51.21  Aligned_cols=65  Identities=23%  Similarity=0.472  Sum_probs=46.1

Q ss_pred             ceEEeeCCeEEEEEeecCCC----CCceEEEecC--CCC--------------CCCceee---eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNP----VPSIIWSKKD--SSL--------------PSGEKSL---EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~~--~~~--------------~~~~~~~---~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|+.++|.|...+.+    .+.+.|++..  ...              .......   ....|.|.+++..|+|.
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG~   89 (111)
T 1j05_L           10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT   89 (111)
T ss_dssp             EEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCCcccCEE
Confidence            45778999999999987755    4679999853  111              0001111   12369999999999999


Q ss_pred             EEEEeecC
Q psy7616          76 YQCTATNG   83 (147)
Q Consensus        76 y~C~~~~~   83 (147)
                      |.|.+.+.
T Consensus        90 Y~C~~~~~   97 (111)
T 1j05_L           90 YYCQQTNE   97 (111)
T ss_dssp             EEEEECSS
T ss_pred             EEEEEecC
Confidence            99999764

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=98.64  E-value=1.5e-09  Score=66.77  Aligned_cols=75  Identities=16%  Similarity=0.154  Sum_probs=47.7

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCC---CceEEEecCCCCCCCc----------eeeeccceEEEeecCCCCe
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPV---PSIIWSKKDSSLPSGE----------KSLEGFSITLEKVDRHQAG   74 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~---~~v~w~~~~~~~~~~~----------~~~~~~~l~~~~~~~~~~g   74 (147)
                      +|.+...++. ...+..|+.++|.|.+.+.+.   +.+.| ++ .......          .......|.|.++...|.|
T Consensus         3 ~p~v~~~~P~-~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~~-~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~D~g   79 (214)
T 1ow0_A            3 HPRLSLHRPA-LEDLLLGSEANLTCTLTGLRDASGVTFTW-TP-SSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGK   79 (214)
T ss_dssp             CCCCEEECCC-HHHHHHCSSCCCEEEETTCCSCCCCCCCB-SS-CSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTC
T ss_pred             CCEEEEECcC-hHHhccCCCcEEEEEEeeeECCCCeEEEE-cC-CCCCCcccCCceECCCCcEEEEEEEEEeHHHcCCCC
Confidence            4555444322 345678999999999988654   68999 43 3321100          0112234666777778999


Q ss_pred             EEEEEeecCCC
Q psy7616          75 VYQCTATNGVG   85 (147)
Q Consensus        75 ~y~C~~~~~~~   85 (147)
                      .|.|.+.+..+
T Consensus        80 ~Y~C~~~~~~~   90 (214)
T 1ow0_A           80 TFTCTAAYPES   90 (214)
T ss_dssp             EEEEEECCSSC
T ss_pred             eEEEEEecCCC
Confidence            99999987654

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.63  E-value=8.3e-07  Score=49.03  Aligned_cols=65  Identities=20%  Similarity=0.447  Sum_probs=45.9

Q ss_pred             ceEEeeCCeEEEEEeecCCC-----CCceEEEecCC--CCC-------------CCce-ee---eccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNP-----VPSIIWSKKDS--SLP-------------SGEK-SL---EGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-----~~~v~w~~~~~--~~~-------------~~~~-~~---~~~~l~~~~~~~~~~g   74 (147)
                      .+.+..|+.++|.|...+.+     .+.+.|++...  ...             ..+. ..   ....|.|.+++.+|+|
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~DsG   89 (113)
T 1dlf_L           10 SLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG   89 (113)
T ss_dssp             EEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             EEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCCChHHCE
Confidence            56888999999999987654     36799998532  110             0011 11   1236899999999999


Q ss_pred             EEEEEeecC
Q psy7616          75 VYQCTATNG   83 (147)
Q Consensus        75 ~y~C~~~~~   83 (147)
                      .|.|.+.+.
T Consensus        90 ~Y~C~~~~~   98 (113)
T 1dlf_L           90 VYFCSQSTH   98 (113)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEEEecC
Confidence            999998764

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.63  E-value=3.9e-09  Score=64.62  Aligned_cols=77  Identities=16%  Similarity=0.299  Sum_probs=53.0

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce----------eeeccceEEEeecCCCCeE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~   75 (147)
                      +|.+...+..  .....|+.+.|.|.+.+. |. +.+.|++++..+.....          ....+.|.|.++...|+|.
T Consensus       113 ~p~v~~~~~~--~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  190 (212)
T 1nfd_E          113 SPKVTVFPPS--PEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNR  190 (212)
T ss_dssp             CCEEECCCCC--HHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSC
T ss_pred             CCEEEeeCCc--hHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCe
Confidence            4444443332  123468899999998876 44 78999999876543211          1113458889999999999


Q ss_pred             EEEEeecCCCC
Q psy7616          76 YQCTATNGVGD   86 (147)
Q Consensus        76 y~C~~~~~~~~   86 (147)
                      |.|.+.|....
T Consensus       191 Y~C~a~n~~~~  201 (212)
T 1nfd_E          191 VSCQVTHEGET  201 (212)
T ss_dssp             EEEEEECTTTT
T ss_pred             EEEEEEeCCce
Confidence            99999997544

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.63  E-value=4.7e-07  Score=51.71  Aligned_cols=85  Identities=15%  Similarity=0.235  Sum_probs=54.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEec---CCCCC-----CCce----eeeccceEEEeecCCCCeEEEEEeecCCC-
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKK---DSSLP-----SGEK----SLEGFSITLEKVDRHQAGVYQCTATNGVG-   85 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~---~~~~~-----~~~~----~~~~~~l~~~~~~~~~~g~y~C~~~~~~~-   85 (147)
                      .+.+..|+.++|.|...+. ...+.|++.   +..+.     ....    ......|.|.+++.+|+|.|.|.+.+..+ 
T Consensus        27 ~~~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~~~~~  105 (134)
T 3kg5_A           27 FIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQQKCNNTS  105 (134)
T ss_dssp             EEEEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCCCTTTEEEEECSSEEEEEECSCCTTTCEEEEEEEECTTTC
T ss_pred             EEEEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEEECCeEEEEccCCEEEEEECCCCcCcCEEEEEEEEcCCCC
Confidence            5688999999999998764 567999987   22221     0111    11234699999999999999999877521 


Q ss_pred             -CceEEeEEEEEeeeecCCC
Q psy7616          86 -DPVTVDMTLEVLCKILPSG  104 (147)
Q Consensus        86 -~~~~~~~~l~v~~~~~~~~  104 (147)
                       ......+.|.|...|.+..
T Consensus       106 ~~~fg~GT~L~V~~~p~~~~  125 (134)
T 3kg5_A          106 EVYQGCGTELRVMGFSTLAQ  125 (134)
T ss_dssp             CEEECCCEEEEEECC-----
T ss_pred             ceEECCCEEEEEecCCCHHH
Confidence             1123445666766665543

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.63  E-value=7.2e-08  Score=68.46  Aligned_cols=87  Identities=22%  Similarity=0.384  Sum_probs=60.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc--e-eeeccceEEEeecCCCCeEEEEEeecCCCC-c---eEEe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE--K-SLEGFSITLEKVDRHQAGVYQCTATNGVGD-P---VTVD   91 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~--~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~-~---~~~~   91 (147)
                      .+.+..|+.+.|.|...+ +.+.+.|.+++..+....  . ......|.|.+++..|+|.|.|.+.+..+. .   ..+.
T Consensus       542 ~v~v~~g~~~~L~C~~~s-p~a~v~W~~~~~~l~~~~~~~~~~~~~~LlI~~v~~~DsG~Y~C~A~e~~~~~~~~~~~~~  620 (663)
T 1olz_A          542 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVVAK  620 (663)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEE
T ss_pred             EEEEecCCcEEEEccCCC-CCCcEEEEECCeeccccCcceEEecCCeEEEEecCcccCeEEEEEEEECccCCCceEEEEE
Confidence            457788999999999988 999999999998764321  1 223567889999999999999999886322 1   2356


Q ss_pred             EEEEEeeeecCCCCc
Q psy7616          92 MTLEVLCKILPSGEK  106 (147)
Q Consensus        92 ~~l~v~~~~~~~~~~  106 (147)
                      ..|.|..+|.+...+
T Consensus       621 ~~l~V~v~P~~~~~p  635 (663)
T 1olz_A          621 HVLEVKVVPKPVVAP  635 (663)
T ss_dssp             EEEEEEC--------
T ss_pred             EEEEEEeCCccCCCC
Confidence            677888888776543

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.62  E-value=1.5e-07  Score=61.10  Aligned_cols=81  Identities=23%  Similarity=0.288  Sum_probs=56.8

Q ss_pred             eEEeeCCeEEEEEeecCC-----CCCceEEEecCCCCCCCcee--eec---cceEEEeecCCCCeEEEEEeecCCCCceE
Q psy7616          20 LTVRKGGTITLECKASGN-----PVPSIIWSKKDSSLPSGEKS--LEG---FSITLEKVDRHQAGVYQCTATNGVGDPVT   89 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~-----~~~~v~w~~~~~~~~~~~~~--~~~---~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   89 (147)
                      ..+..|++++|.|.+.+.     +.+.+.|.+++..++.....  ..+   +.|.|.++...|+|.|.|.+.+..+. ..
T Consensus        10 ~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~~-~~   88 (313)
T 2d9q_B           10 PIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSLQ-IL   88 (313)
T ss_dssp             SEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSEE-EE
T ss_pred             cEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCce-eE
Confidence            478899999999998875     46789999999877543211  122   56999999999999999987553222 23


Q ss_pred             EeEEEEEeeeec
Q psy7616          90 VDMTLEVLCKIL  101 (147)
Q Consensus        90 ~~~~l~v~~~~~  101 (147)
                      ..+.+.+..+|.
T Consensus        89 ~~~~l~v~~~P~  100 (313)
T 2d9q_B           89 DQVELRAGYPPA  100 (313)
T ss_dssp             EEEEEEECCCCC
T ss_pred             EEEEEccCCCCC
Confidence            344555544443

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.61  E-value=3.3e-08  Score=61.09  Aligned_cols=64  Identities=20%  Similarity=0.430  Sum_probs=46.3

Q ss_pred             eEEeeCCeE-EEEEee-cCCCCCceEEEecCCCCCCCc----e--eee------------ccceEEEeecCCCCeEEEEE
Q psy7616          20 LTVRKGGTI-TLECKA-SGNPVPSIIWSKKDSSLPSGE----K--SLE------------GFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        20 ~~~~~g~~~-~l~C~~-~~~~~~~v~w~~~~~~~~~~~----~--~~~------------~~~l~~~~~~~~~~g~y~C~   79 (147)
                      ..+..|+.+ .|.|.+ .+.|.+.+.|++++..+....    .  ...            .+.|.+......|.|.|.|.
T Consensus       128 ~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~  207 (231)
T 2pet_A          128 LSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCA  207 (231)
T ss_dssp             CCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEE
T ss_pred             eeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEE
Confidence            345678887 999998 788999999999988765433    1  000            14467765555569999999


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      +.|.
T Consensus       208 a~n~  211 (231)
T 2pet_A          208 AHYS  211 (231)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            9984

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=98.61  E-value=2.7e-08  Score=55.73  Aligned_cols=37  Identities=24%  Similarity=0.445  Sum_probs=32.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        73 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~-~~~~~l~V~  109 (122)
T 3s35_X           73 LSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVH  109 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEE
T ss_pred             EEEEEECCCCcccCEEEEEEEccCCCce-EEEEEEEEe
Confidence            3468889999999999999999999988 678888774

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.61  E-value=1.5e-07  Score=52.62  Aligned_cols=65  Identities=25%  Similarity=0.437  Sum_probs=47.2

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEecCCCCC------C-----Cce-e-------eeccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKKDSSLP------S-----GEK-S-------LEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~------~-----~~~-~-------~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+.+..|++++|.|...+. +.+.+.|++......      .     ... .       .....|.|.+++..|+|.|.|
T Consensus        16 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   95 (120)
T 2yz1_A           16 SVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPEDAGTYYC   95 (120)
T ss_dssp             EEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGGGCEEEEE
T ss_pred             eEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHHHCEEEEE
Confidence            6688999999999998764 456899999753210      0     000 0       112469999999999999999


Q ss_pred             EeecC
Q psy7616          79 TATNG   83 (147)
Q Consensus        79 ~~~~~   83 (147)
                      .+.+.
T Consensus        96 ~~~~~  100 (120)
T 2yz1_A           96 VKFQK  100 (120)
T ss_dssp             EEEEC
T ss_pred             EEEcC
Confidence            98764

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=98.60  E-value=3.2e-08  Score=53.04  Aligned_cols=36  Identities=19%  Similarity=0.439  Sum_probs=32.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      +..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        59 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V   94 (95)
T 2ckn_A           59 GEEVEVRDSIPADSGLYACVTSSPSGSD-TTYFSVNV   94 (95)
T ss_dssp             SSEEEESSCCGGGSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             CCEEEECCCChHHCEEEEEEeccCCCcE-EEEEEEEE
Confidence            5679999999999999999999999987 77888877

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=98.60  E-value=5.1e-08  Score=52.18  Aligned_cols=37  Identities=24%  Similarity=0.415  Sum_probs=32.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      +..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        50 ~~~L~i~~~~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~   86 (95)
T 4hwu_A           50 GEYLQIKGATPRDSGLYACTAARTVDSE-TWIFMVNVT   86 (95)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             CCEEEECcCCcccCEEEEEEEccCCCcE-EEEEEEEEe
Confidence            5678999999999999999999999977 778888773

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=98.60  E-value=9e-08  Score=58.70  Aligned_cols=63  Identities=22%  Similarity=0.386  Sum_probs=46.8

Q ss_pred             eCCeEEEEEeecC-CCCC-ceEEEecCCCCCCC-ce----e-------eeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          24 KGGTITLECKASG-NPVP-SIIWSKKDSSLPSG-EK----S-------LEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        24 ~g~~~~l~C~~~~-~~~~-~v~w~~~~~~~~~~-~~----~-------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      .|+.+.|.|.+.+ .|.+ .+.|++++..+... ..    .       ...+.|.|..+...|.|.|.|.+.|....
T Consensus       128 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  204 (216)
T 2xzc_L          128 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  204 (216)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCC
Confidence            5889999999877 3554 79999998876543 11    0       11225788888889999999999986543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.59  E-value=3.1e-07  Score=59.08  Aligned_cols=81  Identities=21%  Similarity=0.350  Sum_probs=53.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCC------ceEEEecC--CCCC-------------CCcee-e---eccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVP------SIIWSKKD--SSLP-------------SGEKS-L---EGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~------~v~w~~~~--~~~~-------------~~~~~-~---~~~~l~~~~~~~~~~   73 (147)
                      .+.+..|+.++|.|.+.+.+.+      .+.|++..  ..+.             ..... .   ....|.|.++..+|+
T Consensus       168 ~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds  247 (291)
T 2gki_A          168 SLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTISSVQAEDL  247 (291)
T ss_dssp             EEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEEECCCCHHHC
Confidence            5678899999999999887655      89999963  2111             00111 1   123689999999999


Q ss_pred             eEEEEEeecCCCCceEEeEEEEEeee
Q psy7616          74 GVYQCTATNGVGDPVTVDMTLEVLCK   99 (147)
Q Consensus        74 g~y~C~~~~~~~~~~~~~~~l~v~~~   99 (147)
                      |.|.|.+.+.....+.....|.+...
T Consensus       248 G~Y~C~a~~~~~~~fg~gt~l~v~~~  273 (291)
T 2gki_A          248 AVYYCKQSYYHMYTFGSGTKLEIKHH  273 (291)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEECC
T ss_pred             EEEEEEEccCCceEEcCCEEEEEEee
Confidence            99999998753322223344444433

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.59  E-value=3.8e-08  Score=52.81  Aligned_cols=39  Identities=15%  Similarity=0.391  Sum_probs=31.4

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCC-CcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGD-PVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~-~~~~~~~l~V~  147 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|. ..+..+.|.|.
T Consensus        55 ~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~~v~V~   94 (96)
T 2ens_A           55 PSPVLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISII   94 (96)
T ss_dssp             CCSEEEEESCCTTTCEEEECEECCSSCCCEECCCEEEEEC
T ss_pred             CCCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEEEEEEe
Confidence            4567999999999999999999997543 35667777763

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=98.58  E-value=6.1e-08  Score=60.92  Aligned_cols=77  Identities=19%  Similarity=0.340  Sum_probs=52.4

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCC-ce-----------eeeccceEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSG-EK-----------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~-~~-----------~~~~~~l~~~~~~~~~~   73 (147)
                      +|.+...+...  ....|+.+.|.|.+.+. |. +.+.|++++..+... ..           ......|.|.++...|+
T Consensus       154 ~P~v~~~~~~~--~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~  231 (254)
T 2c1o_A          154 APTVSIFPPSS--EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERH  231 (254)
T ss_dssp             CCEEEEECCCH--HHHHTTEEEEEEEEEEEBSSCCEEEEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred             CCeeEeecCCh--hhccCCcEEEEEEEecccCCCcEEEEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCC
Confidence            45555443321  22357899999998773 43 459999998876543 11           11234688999999999


Q ss_pred             eEEEEEeecCCCC
Q psy7616          74 GVYQCTATNGVGD   86 (147)
Q Consensus        74 g~y~C~~~~~~~~   86 (147)
                      |.|.|.+.|....
T Consensus       232 G~Y~C~a~n~~~~  244 (254)
T 2c1o_A          232 NSYTCEATHKTST  244 (254)
T ss_dssp             CEEEEEEECTTCS
T ss_pred             CeEEEEEEcCCCC
Confidence            9999999997543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=98.58  E-value=1.1e-08  Score=62.61  Aligned_cols=77  Identities=18%  Similarity=0.303  Sum_probs=52.3

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC--CCCceEEEecCCCCCCCce-----------eeeccceEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN--PVPSIIWSKKDSSLPSGEK-----------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~   73 (147)
                      .+|.+...+...  ....|+.+.|.|.+.+.  +.+.+.|++++..+.....           ......|.+.++...|.
T Consensus       110 ~~P~v~~~~~~~--~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  187 (211)
T 3tv3_L          110 AAPSVTLFPPSS--EELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSH  187 (211)
T ss_dssp             BCCEEEEECCCH--HHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHS
T ss_pred             cCCeeEecCCch--hhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCC
Confidence            355555554422  23369999999998774  3578999999877643111           11124577777777889


Q ss_pred             eEEEEEeecCCC
Q psy7616          74 GVYQCTATNGVG   85 (147)
Q Consensus        74 g~y~C~~~~~~~   85 (147)
                      |.|.|.+.+..+
T Consensus       188 g~Y~C~v~~~~~  199 (211)
T 3tv3_L          188 RSYSCQVTHEGS  199 (211)
T ss_dssp             SCEEEEEEETTE
T ss_pred             CeEEEEEEECCC
Confidence            999999998754

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.58  E-value=3.2e-07  Score=59.93  Aligned_cols=79  Identities=24%  Similarity=0.347  Sum_probs=55.4

Q ss_pred             eEEeeCCeEEEEEeecCCC-CCceEEEecCCCCCCC--ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          20 LTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSG--EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      +.+..|++++|.|.+.+.+ .+.+.|.+++..+...  ........|.|.++...|+|.|.|..   .+.. ...+.|.|
T Consensus        16 v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~---~g~~-~~~~~L~V   91 (325)
T 1n26_A           16 LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYR---AGRP-AGTVHLLV   91 (325)
T ss_dssp             EEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEES---SSSC-SCEEEEEE
T ss_pred             EECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccceEEecccchhhCeEeEEEe---CCEE-eeeEEEEe
Confidence            3446899999999987654 6789999988765221  12234567999999999999999993   3332 44566666


Q ss_pred             eeeecC
Q psy7616          97 LCKILP  102 (147)
Q Consensus        97 ~~~~~~  102 (147)
                      ..+|..
T Consensus        92 ~~pP~~   97 (325)
T 1n26_A           92 DVPPEE   97 (325)
T ss_dssp             CCCCCC
T ss_pred             ccCCCC
Confidence            655543

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.58  E-value=3.2e-07  Score=50.39  Aligned_cols=65  Identities=20%  Similarity=0.389  Sum_probs=46.1

Q ss_pred             ceEEeeCCeEEEEEe-ecCCC-CCceEEEecCCCCC-------------CCce-ee-----eccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECK-ASGNP-VPSIIWSKKDSSLP-------------SGEK-SL-----EGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~-~~~~~-~~~v~w~~~~~~~~-------------~~~~-~~-----~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|++++|.|. ..+.+ .+.+.|++......             ..+. ..     ....|.|.+++..|+|.|.
T Consensus         9 ~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   88 (109)
T 1pew_A            9 SVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEADYY   88 (109)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEEEE
Confidence            568889999999999 76654 46799998762210             0111 11     1236999999999999999


Q ss_pred             EEeecC
Q psy7616          78 CTATNG   83 (147)
Q Consensus        78 C~~~~~   83 (147)
                      |.+.+.
T Consensus        89 C~~~~~   94 (109)
T 1pew_A           89 CQSYDA   94 (109)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            998764

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=98.58  E-value=3.1e-07  Score=50.47  Aligned_cols=66  Identities=20%  Similarity=0.410  Sum_probs=46.1

Q ss_pred             ceEEeeCCeEEEEEeecCCC-CCceEEEecCCC--CC------------CCce-ee-----eccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNP-VPSIIWSKKDSS--LP------------SGEK-SL-----EGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~~~--~~------------~~~~-~~-----~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|++++|.|...+.. ...+.|++....  ..            ..+. ..     ....|.|.+++..|+|.|.
T Consensus         5 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   84 (110)
T 2q87_A            5 TVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTYW   84 (110)
T ss_dssp             EEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEEEE
T ss_pred             EEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEEEE
Confidence            45788999999999976543 357999985421  10            0000 11     1236899999999999999


Q ss_pred             EEeecCC
Q psy7616          78 CTATNGV   84 (147)
Q Consensus        78 C~~~~~~   84 (147)
                      |.+.+..
T Consensus        85 C~~~~~~   91 (110)
T 2q87_A           85 CGVDTPW   91 (110)
T ss_dssp             EEEECTT
T ss_pred             EEEecCc
Confidence            9998864

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=98.58  E-value=2.5e-07  Score=58.35  Aligned_cols=75  Identities=25%  Similarity=0.529  Sum_probs=51.2

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCC-------------------Cce----eeeccceE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS-------------------GEK----SLEGFSIT   64 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~-------------------~~~----~~~~~~l~   64 (147)
                      +|.+...+.  ...+..|+.++|.|.+.+. .+.+.|++.......                   ...    ......|.
T Consensus       137 ~~~v~~~p~--~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~  213 (256)
T 3tf7_C          137 EAAVTQSPR--NKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLT  213 (256)
T ss_dssp             -CCEEESCS--EEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEE
T ss_pred             ccEEEecCC--EEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEE
Confidence            445555544  5577899999999998875 678999984321100                   000    01233699


Q ss_pred             EEeecCCCCeEEEEEeecCCC
Q psy7616          65 LEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        65 ~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      |.+++..|+|.|.|.+.+..+
T Consensus       214 I~~v~~~DsG~Y~C~a~n~~g  234 (256)
T 3tf7_C          214 LESASPSQTSLYFCASSDAPG  234 (256)
T ss_dssp             ESSCCGGGCEEEEEEEEEETT
T ss_pred             ECCCCHHHCEEEEEEecCCCC
Confidence            999999999999999987543

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}

Probab=98.57  E-value=1e-07  Score=51.86  Aligned_cols=84  Identities=18%  Similarity=0.284  Sum_probs=54.3

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCC----CceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPV----PSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +|.+...|.   ..+..|++++|.| ... ..    ..+.|++++........  ......+.|..++..|+|.|.|...
T Consensus         9 kPsL~a~p~---~~v~~G~~VTL~C-~~~-~~~~~~~~f~l~k~g~~~~~~~~~~~~~~a~f~i~~vt~~~aG~Y~C~~~   83 (102)
T 4esk_A            9 DITIFPNSS---LMISQGTFVTVVC-SYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIYS   83 (102)
T ss_dssp             EEEEECCSE---EEEETTCCEEEEE-ECT-TTGGGCCEEEEEETTEEEEEEECCSSCSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEeCC---CcccCCCcEEEEE-CCC-cCCCcccEEEEEECCccccccccCCCCcceEEEeCcCCcccCeeEEEEEe
Confidence            455555553   2788999999999 743 34    57999988754321000  1133468889999999999999987


Q ss_pred             cCCC-CceEEeEEEEE
Q psy7616          82 NGVG-DPVTVDMTLEV   96 (147)
Q Consensus        82 ~~~~-~~~~~~~~l~v   96 (147)
                      +..+ ...+.++.|.|
T Consensus        84 ~~~~~S~~Sdpl~L~V   99 (102)
T 4esk_A           84 KGITWSERSKTLELKV   99 (102)
T ss_dssp             ETTTEEEECCCEEEEE
T ss_pred             CCCccccCcCCEEEEE
Confidence            6543 22244555544

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.57  E-value=5e-07  Score=55.61  Aligned_cols=64  Identities=17%  Similarity=0.363  Sum_probs=47.4

Q ss_pred             eeCCeEEEEEeecC-CCC--CceEEEecCCCCCC----------CceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          23 RKGGTITLECKASG-NPV--PSIIWSKKDSSLPS----------GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        23 ~~g~~~~l~C~~~~-~~~--~~v~w~~~~~~~~~----------~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      ..|+.+.|.|.+.+ .|.  +.+.|++++..+..          .......+.|.+......|.|.|.|.+.+..+.
T Consensus       136 ~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~  212 (221)
T 3m8o_H          136 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNP  212 (221)
T ss_dssp             CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSC
T ss_pred             ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCC
Confidence            57899999999887 555  37999998877621          111122335788888888999999999997654

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.57  E-value=6.3e-08  Score=59.69  Aligned_cols=76  Identities=18%  Similarity=0.333  Sum_probs=51.8

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC-ceEEEecCCCCCCCce--------eeeccceEEEeecCCCCeEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP-SIIWSKKDSSLPSGEK--------SLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      +|.+...++..  .+..|+.+.|.|.+.+. |.+ .+.|++++..+.....        ....+.|.|.++...| |.|.
T Consensus       127 ~P~i~~~~~~~--~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~  203 (222)
T 1q9r_B          127 PPSVYPLAPGS--AAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVT  203 (222)
T ss_dssp             CCEEEEECCCS--CCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCE
T ss_pred             CCeEEEccccc--cccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEE
Confidence            34444433322  24579999999999875 777 8999999876542110        1112357787887788 9999


Q ss_pred             EEeecCCCC
Q psy7616          78 CTATNGVGD   86 (147)
Q Consensus        78 C~~~~~~~~   86 (147)
                      |.+.|..+.
T Consensus       204 C~a~n~~~~  212 (222)
T 1q9r_B          204 CNVAHPASS  212 (222)
T ss_dssp             EEEEEGGGT
T ss_pred             EEEEccCCC
Confidence            999997665

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.57  E-value=9.7e-07  Score=54.96  Aligned_cols=65  Identities=18%  Similarity=0.308  Sum_probs=45.6

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC-------------CCce-ee-----eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP-------------SGEK-SL-----EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~-------------~~~~-~~-----~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|+.+.|.|...+.+  ...+.|++..  ..+.             ..+. ..     ....|.|.+++..|+|.
T Consensus        10 ~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~Dsg~   89 (229)
T 1hxm_A           10 TVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGS   89 (229)
T ss_dssp             EEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCCHhHCeE
Confidence            56788999999999987543  3569999853  1110             0111 11     12369999999999999


Q ss_pred             EEEEeecC
Q psy7616          76 YQCTATNG   83 (147)
Q Consensus        76 y~C~~~~~   83 (147)
                      |.|.+.+.
T Consensus        90 Y~C~~~~~   97 (229)
T 1hxm_A           90 YYCACDTL   97 (229)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99998765

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=98.57  E-value=1.8e-07  Score=51.35  Aligned_cols=64  Identities=23%  Similarity=0.455  Sum_probs=45.9

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCC----C-CCcee------eeccceEEEeecCCCCeEEEEEeec
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSL----P-SGEKS------LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~----~-~~~~~------~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+.+..|++++|.|...+..  .+.+.|++..  ...    . .....      .....|.|.+++.+|+|.|.|.+.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (108)
T 2coq_A            9 IATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYKCKAYR   87 (108)
T ss_dssp             EEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEEEEEEe
Confidence            55788999999999987643  4579999863  211    0 11111      1234699999999999999999876

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.56  E-value=4e-07  Score=50.40  Aligned_cols=64  Identities=20%  Similarity=0.459  Sum_probs=46.1

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC-----CCcee------eeccceEEEeecCCCCeEEEEEeec
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP-----SGEKS------LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~-----~~~~~------~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+.+..|++++|.|...+.+  .+.+.|++..  ....     ..+..      .....|.|.+++.+|+|.|.|.+.+
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~   87 (113)
T 1sq2_N            9 SVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGV   87 (113)
T ss_dssp             EEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECB
T ss_pred             cEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEe
Confidence            56788999999999987654  4679999863  2111     11111      1234699999999999999999876

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.56  E-value=9.8e-08  Score=59.19  Aligned_cols=64  Identities=22%  Similarity=0.346  Sum_probs=47.1

Q ss_pred             eeCCeEEEEEeecCC-C-CCceEEEecCCCCCCCc-e-----------eeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          23 RKGGTITLECKASGN-P-VPSIIWSKKDSSLPSGE-K-----------SLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~-~-~~~v~w~~~~~~~~~~~-~-----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      ..|+.+.|.|.+.+. | .+.+.|++++..+.... .           ......|.+......|.|.|.|.+.|....
T Consensus       148 ~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  225 (237)
T 3sob_L          148 LKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS  225 (237)
T ss_dssp             HHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             ccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCC
Confidence            358899999998773 4 57899999988775421 0           111335778888888999999999997643

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.56  E-value=4.7e-07  Score=51.16  Aligned_cols=65  Identities=20%  Similarity=0.411  Sum_probs=46.2

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEec--CCCCC-----CCcee------eeccceEEEeecCCCCeEEEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKK--DSSLP-----SGEKS------LEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~--~~~~~-----~~~~~------~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+.+..|++++|.|...+.  +.+.+.|++.  +....     ..+..      .....|.|.+++.+|+|.|.|.+.+.
T Consensus         9 ~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~~~   88 (126)
T 3moq_A            9 TATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFYV   88 (126)
T ss_dssp             EEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             eEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEEEEEEEEEc
Confidence            5688999999999998664  4567999984  22211     01111      12346999999999999999998764

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.56  E-value=6.1e-07  Score=55.43  Aligned_cols=66  Identities=18%  Similarity=0.290  Sum_probs=46.1

Q ss_pred             EeeCCeEEEEEeecCC-CCC-ceEEEe-cCCCCCCCc---------eeeeccceEEEeecC--CCCeEEEEEeecCCCCc
Q psy7616          22 VRKGGTITLECKASGN-PVP-SIIWSK-KDSSLPSGE---------KSLEGFSITLEKVDR--HQAGVYQCTATNGVGDP   87 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~-~~~-~v~w~~-~~~~~~~~~---------~~~~~~~l~~~~~~~--~~~g~y~C~~~~~~~~~   87 (147)
                      +..|+.+.|.|.+.+. |.+ .+.|++ ++..+....         ...-.+.|.|.....  .|.|.|.|.+.|..+..
T Consensus       138 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~  217 (223)
T 1dee_B          138 SNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK  217 (223)
T ss_dssp             CCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred             cCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence            3578999999998876 666 899999 877764300         011123466666554  67899999999987653

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=98.56  E-value=3.9e-07  Score=55.11  Aligned_cols=59  Identities=20%  Similarity=0.312  Sum_probs=42.4

Q ss_pred             eeCC-eEEEEEeecCC-CCCceEEEecCCCCCCCceeeeccceEEEeecCC-CCeEEEEEeecCCCCc
Q psy7616          23 RKGG-TITLECKASGN-PVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRH-QAGVYQCTATNGVGDP   87 (147)
Q Consensus        23 ~~g~-~~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~g~y~C~~~~~~~~~   87 (147)
                      ..|. .+.|.|.+.+. +.+.+.|++++..+.      ....|.+...... |+|.|.|.+.|..+..
T Consensus       121 ~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~------~~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~  182 (193)
T 2if7_A          121 QNMTCELHLTCSVEDADDNVSFRWEALGNTLS------SQPNLTVSWDPRISSEQDYTCIAENAVSNL  182 (193)
T ss_dssp             -CSSEEEEEEEEEESCCTTCEEEEEETTEEEE------SSSEEEEEECTTTCSCCEEEEEEEETTEEE
T ss_pred             cCCCceEEEEEEEecCCCceEEEEEeCCEEcC------CCCeEEEEeccCcCCCCcEEEEEECCCCcc
Confidence            3455 89999999884 478999999876442      2334666544443 7999999999987653

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.56  E-value=1.9e-08  Score=55.25  Aligned_cols=35  Identities=37%  Similarity=0.670  Sum_probs=31.0

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        66 ~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V  100 (110)
T 2dm3_A           66 HSLIIEPVTSRDAGIYTCIATNRAGQN-SFSLELVV  100 (110)
T ss_dssp             EEEEESSCCGGGCSBBCEEEECSSCEE-EECCEEEE
T ss_pred             EEEEEeeCCcccCEEEEEEEECCCCEE-EEEEEEEE
Confidence            368889999999999999999999987 77787776

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=98.55  E-value=1.1e-06  Score=50.83  Aligned_cols=79  Identities=18%  Similarity=0.336  Sum_probs=52.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC-------------CCce-e---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP-------------SGEK-S---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~-------------~~~~-~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|...+.....+.|++..  ..+.             ..+. .   .....|.|.+++.+|+|.|.|.
T Consensus         9 ~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~DsG~Y~C~   88 (143)
T 3u6r_L            9 TLSLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPEDFAVYYCQ   88 (143)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             EEEEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCcccCCEEEEEE
Confidence            467889999999999877666679999853  1110             0011 1   1233689999999999999999


Q ss_pred             eecCCCCceEEeEEEEEee
Q psy7616          80 ATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~~   98 (147)
                      +.+.. ......+.|.|..
T Consensus        89 ~~~~~-~~fg~gt~L~V~~  106 (143)
T 3u6r_L           89 QRSDW-VTFGGGTKVEIKA  106 (143)
T ss_dssp             ECSSB-CEECCCEEEEEC-
T ss_pred             EecCC-CEECCCEEEEECC
Confidence            87653 2223345555543

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=98.55  E-value=5.5e-08  Score=59.45  Aligned_cols=75  Identities=17%  Similarity=0.303  Sum_probs=50.3

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCC-CC-ceEEEecCCCCCCCce----e-------eeccceEEEeecCCCCe
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP-VP-SIIWSKKDSSLPSGEK----S-------LEGFSITLEKVDRHQAG   74 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~-~v~w~~~~~~~~~~~~----~-------~~~~~l~~~~~~~~~~g   74 (147)
                      +|.+...+...  ....|+.+.|.|.+.+.+ .+ .+.|++++..+.....    .       .....|.|.+....|.|
T Consensus       115 ~P~v~~~~~~~--~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g  192 (212)
T 1q0x_L          115 SPTVTLFPPSS--EELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHS  192 (212)
T ss_dssp             CCEEEEECCCH--HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCC
T ss_pred             CCeeEEeCCCH--HHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCC
Confidence            45554443321  223588999999987743 33 7999999876643211    0       11235778888889999


Q ss_pred             EEEEEeecCC
Q psy7616          75 VYQCTATNGV   84 (147)
Q Consensus        75 ~y~C~~~~~~   84 (147)
                      .|.|.+.+..
T Consensus       193 ~Y~C~a~n~~  202 (212)
T 1q0x_L          193 SYSCQVTHEG  202 (212)
T ss_dssp             EEEEEEEETT
T ss_pred             cEEEEEEeCC
Confidence            9999999864

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.54  E-value=2.8e-06  Score=51.30  Aligned_cols=83  Identities=14%  Similarity=0.175  Sum_probs=52.2

Q ss_pred             eEEcCCCCceEEeeCCeEEEEEeecCCCCCc-eEEEecCCCCCCCceee--eccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          11 IRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEKSL--EGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~w~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      +.+.|.  ...+..|+.+.++|...- +.+. +.|...   +.......  .-..+.+.++.  +.|.|.|.+...... 
T Consensus         5 v~v~P~--~~~V~~G~S~~l~Cs~~c-~~p~~~glet~---l~~~~~~~g~~w~~l~l~~vs--~~g~~~C~~~c~~~~-   75 (192)
T 1zxq_A            5 VHVRPK--KLAVEPKGSLEVNCSTTC-NQPEVGGLETS---LNKILLDEQAQWKHYLVSNIS--HDTVLQCHFTCSGKQ-   75 (192)
T ss_dssp             EEEESS--EEEECTTEEEEEEEEESC-SSCSEEEEECS---SEEEEEEEETTEEEEEEEEEC--SCEEEEEEEEETTEE-
T ss_pred             EEEeCC--CcEEeCCCcEEEEEECCC-CCccccccccc---cCceEEcCCCCeEEEEEeccc--cCCeeEEEEECCCcc-
Confidence            444554  557889999999999854 4444 556542   21111111  22358888888  678999998764333 


Q ss_pred             eEEeEEEEEeeeecC
Q psy7616          88 VTVDMTLEVLCKILP  102 (147)
Q Consensus        88 ~~~~~~l~v~~~~~~  102 (147)
                      ..+.+.+.+..+|+.
T Consensus        76 ~~~~~~itVy~~P~~   90 (192)
T 1zxq_A           76 ESMNSNVSVYQPPRQ   90 (192)
T ss_dssp             EEEEEEEEECBCCCC
T ss_pred             eEEEEEEEEEeCCCC
Confidence            356777777766644

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=98.54  E-value=8.7e-08  Score=55.98  Aligned_cols=35  Identities=31%  Similarity=0.511  Sum_probs=30.7

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        98 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V  132 (154)
T 1fhg_A           98 CSLTISEVCGDDDAKYTCKAVNSLGEA-TCTAELLV  132 (154)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEECCCChhcCEEEEEEEEECCCeE-EEEEEEEE
Confidence            368889999999999999999999987 77777776

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.54  E-value=3e-08  Score=55.39  Aligned_cols=36  Identities=14%  Similarity=0.194  Sum_probs=32.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...|.|.++...|+|.|+|.|.|..|.. +..+.|+|
T Consensus        79 ~~~L~I~~v~~~D~G~Y~Cevsn~~g~~-s~~~~L~V  114 (118)
T 2edn_A           79 TVELHIGKVVLGDRGYYRLEVKAKDTCD-SCGFNIDV  114 (118)
T ss_dssp             EEEEEESSCCTTTCSCEEEEEECSSCEE-EEEECCEE
T ss_pred             eEEEEEeeCChhhCEEEEEEEEEcCCcE-EEEEEEEE
Confidence            3578999999999999999999999976 88888877

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.54  E-value=5.8e-07  Score=56.30  Aligned_cols=64  Identities=20%  Similarity=0.398  Sum_probs=47.0

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEec--CCCCCC------------------Cce-ee-----eccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKK--DSSLPS------------------GEK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~--~~~~~~------------------~~~-~~-----~~~~l~~~~~~~   70 (147)
                      ...+..|+.+.|.|.+.+.+  .+.+.|+++  +..+..                  ... ..     ....|.|.+++.
T Consensus       140 ~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  219 (250)
T 3esu_F          140 PELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAYMQLSSLTS  219 (250)
T ss_dssp             CEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             ceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEEEEECCCCc
Confidence            45788999999999988766  678999997  333210                  000 11     112599999999


Q ss_pred             CCCeEEEEEeec
Q psy7616          71 HQAGVYQCTATN   82 (147)
Q Consensus        71 ~~~g~y~C~~~~   82 (147)
                      .|+|.|.|.+.+
T Consensus       220 ~DsG~Y~C~~~~  231 (250)
T 3esu_F          220 VDSAVYFCARSG  231 (250)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccCEEEEEEEec
Confidence            999999999986

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.53  E-value=5.9e-08  Score=54.81  Aligned_cols=35  Identities=23%  Similarity=0.469  Sum_probs=31.7

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+|.|.+++.+|+|.|+|.+.|..|.. +..++|.|
T Consensus        84 ~sL~I~~v~~~D~G~Y~C~v~~~~g~~-~~~v~LkV  118 (125)
T 4gos_A           84 ASLRLKNVQLTDAGTYKCYIITSKGKG-NANLEYKT  118 (125)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEeCCCeE-EEEEEEEE
Confidence            479999999999999999999999887 78888876

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=98.53  E-value=3.5e-06  Score=51.79  Aligned_cols=64  Identities=19%  Similarity=0.373  Sum_probs=45.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC---C--C--------cee-e-----eccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP---S--G--------EKS-L-----EGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~---~--~--------~~~-~-----~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|+.+.|.|...+.....+.|++..  ..+.   .  .        +.. .     ....|.|.+++..|+|.|.
T Consensus        12 ~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~~Dsg~Y~   91 (210)
T 2eys_A           12 SLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYI   91 (210)
T ss_dssp             EEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCcccCceEE
Confidence            568889999999999876555679999853  1110   0  0        000 0     1236899999999999999


Q ss_pred             EEeec
Q psy7616          78 CTATN   82 (147)
Q Consensus        78 C~~~~   82 (147)
                      |.+.+
T Consensus        92 C~~~~   96 (210)
T 2eys_A           92 CVVSD   96 (210)
T ss_dssp             EEEES
T ss_pred             EEEEc
Confidence            99876

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}

Probab=98.53  E-value=1.4e-07  Score=52.61  Aligned_cols=88  Identities=17%  Similarity=0.269  Sum_probs=55.7

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCC----CceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPV----PSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      .+|.+...|.   -.+..|++++|.| ... ..    ..+.|++++........  ......+.|.+++..|+|.|+|..
T Consensus         8 pkPsL~a~P~---~vV~~G~~VTL~C-~~~-~~~~~~~~f~L~k~g~~~~~~~~~~~~~~a~f~i~~vt~~daG~Y~C~y   82 (118)
T 4ety_A            8 PDITIFPNSS---LMISQGTFVTVVC-SYS-DKHDLYNMVRLEKDGSTFMEKSTEPYKTEDEFEIGPVNETITGHYSCIY   82 (118)
T ss_dssp             CEEEEECCSE---EEEETTCCEEEEE-ECT-TTGGGCCEEEEEETTEEEEEEECCSSSSEEEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEEeCC---CcccCCCcEEEEE-CCC-CCCcccCEEEEEECCcCccccccCCCCcceEEEeCccCccCCeEEEEEe
Confidence            3455555554   3788999999999 643 34    57999998754321000  113346888999999999999998


Q ss_pred             ecCCC-CceEEeEEEEEeee
Q psy7616          81 TNGVG-DPVTVDMTLEVLCK   99 (147)
Q Consensus        81 ~~~~~-~~~~~~~~l~v~~~   99 (147)
                      .+..+ ...+..+.|.|...
T Consensus        83 ~~~~~wS~~Sdpl~L~Vtg~  102 (118)
T 4ety_A           83 SKGITWSERSKTLELKVIKE  102 (118)
T ss_dssp             EC----CEECCCEEEEEECC
T ss_pred             eCCCccccccCCEEEEEEEe
Confidence            76543 22345566655543

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.52  E-value=3.2e-07  Score=56.55  Aligned_cols=66  Identities=12%  Similarity=0.271  Sum_probs=47.3

Q ss_pred             EeeCCeEEEEEeecCC-CC--CceEEEecCCCCCC--Cc-------eeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          22 VRKGGTITLECKASGN-PV--PSIIWSKKDSSLPS--GE-------KSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~-~~--~~v~w~~~~~~~~~--~~-------~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      +..|+.+.|.|.+.+. |.  +.+.|++++..+..  ..       .....+.|.|.+....|.|.|.|.+.|..+..
T Consensus       134 ~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~v~n~~~~~  211 (220)
T 2fbj_H          134 ALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNPV  211 (220)
T ss_dssp             SSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSCC
T ss_pred             ccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEcCCCce
Confidence            3578999999998775 55  68999999876521  00       01112347777777788999999999987664

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.51  E-value=5.4e-07  Score=50.36  Aligned_cols=79  Identities=20%  Similarity=0.297  Sum_probs=50.6

Q ss_pred             eEEeeCCeEEEEEeecCCC---CCceEEEecCC--CC--------------CCCceee---eccceEEEeecCCCCeEEE
Q psy7616          20 LTVRKGGTITLECKASGNP---VPSIIWSKKDS--SL--------------PSGEKSL---EGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~---~~~v~w~~~~~--~~--------------~~~~~~~---~~~~l~~~~~~~~~~g~y~   77 (147)
                      +.+..|++++|.|...+.+   ...+.|++...  ..              .......   ....|.|.+++.+|+|.|.
T Consensus        10 ~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~DsG~Y~   89 (120)
T 1oaq_L           10 LTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIYF   89 (120)
T ss_dssp             EEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEEE
T ss_pred             EEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEEEECCCChhhCeEEE
Confidence            5788999999999987654   45799998431  10              0011111   1236999999999999999


Q ss_pred             EEeecCCCCceEEeEEEEEee
Q psy7616          78 CTATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        78 C~~~~~~~~~~~~~~~l~v~~   98 (147)
                      |.+.+.........+.|.|..
T Consensus        90 C~~~~~~~~~fg~gt~L~V~~  110 (120)
T 1oaq_L           90 CALWYSNHLVFGGGTKLTVLG  110 (120)
T ss_dssp             EEEEETTEEEECCCEEEEECC
T ss_pred             EEEccCCCcEECCCEEEEEcC
Confidence            998765321122234455543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	3e-18
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	2e-17
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-15
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-14
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	0.002
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-14
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-13
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	4e-13
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	9e-13
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-12
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-12
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-12
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	4e-12
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	4e-12
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	0.003
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	9e-12
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-11
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-11
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-11
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-10
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	2e-10
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	3e-10
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	9e-10
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-09
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-09
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-09
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	6e-09
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	6e-09
d1fnla1	84	b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD3	4e-08
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	9e-08
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	3e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-07
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	5e-07
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	9e-07
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	1e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	1e-06
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	2e-06
d1l6za2	96	b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a,	2e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	9e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-05
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	1e-05
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	2e-05
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	2e-05
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	2e-05
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	2e-05
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	3e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	6e-05
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	6e-05
d2fcba1	85	b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD3	9e-05
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	1e-04
d1f2qa2	89	b.1.1.4 (A:86-174) IgE high affinity receptor alph	1e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	2e-04
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	2e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	3e-04
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	4e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	7e-04
d1f2qa1	82	b.1.1.4 (A:4-85) IgE high affinity receptor alpha	0.001
d2nxyb2	84	b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (H	0.001
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.002
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	0.004
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.004

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 72.1 bits (176), Expect = 3e-18
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 2/89 (2%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
           P     P    + V++G  +T+ CK +G P P+++WS     L  G  ++    + ++ 
Sbjct: 2  APKYEQKPEK-VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKG 60

Query: 68 VDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          V     G Y C ATN  GD    +  ++V
Sbjct: 61 VKNGDKGYYGCRATNEHGD-KYFETLVQV 88

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 70.3 bits (171), Expect = 2e-17
 Identities = 27/100 (27%), Positives = 46/100 (46%), Gaps = 8/100 (8%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-------LE 59
           VPP+++   S    T   G ++TL C A G P P++ W+K    + + E+         +
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDD 61

Query: 60  GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
              +T+  VD++    Y C A N  G+     + L+V  K
Sbjct: 62  SSELTIRNVDKNDEAEYVCIAENKAGE-QDASIHLKVFAK 100

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 65.2 bits (158), Expect = 2e-15
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 7/83 (8%)

Query: 21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAG 74
           V    T+   C A GNP+P++ W K         +        + +S+ +E V     G
Sbjct: 16 AVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKG 75

Query: 75 VYQCTATNGVGDPVTVDMTLEVL 97
           Y C   N  G  +     L+V+
Sbjct: 76 NYTCVVENEYGS-INHTYHLDVV 97

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 63.3 bits (153), Expect = 1e-14
 Identities = 31/90 (34%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
            PSI+            G  +TLEC A GNPVP I W K D S  S   S E   + ++
Sbjct: 3  YAPSIKAKFPA-DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEP-LLHIQ 60

Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           VD    G Y+C A N  G   T    + +
Sbjct: 61 NVDFEDEGTYECEAENIKGR-DTYQGRIII 89

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 33.6 bits (76), Expect = 0.002
 Identities = 23/107 (21%), Positives = 37/107 (34%), Gaps = 22/107 (20%)

Query: 40  PSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
           PSI      +  P+   +L G  +TLE           C A    G+PV      ++   
Sbjct: 5   PSIK-----AKFPADTYALTGQMVTLE-----------CFAF---GNPVPQIKWRKLDGS 45

Query: 100 ILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 146
                +       + ++ VD    G Y+C A N  G   T    + +
Sbjct: 46  QTS--KWLSSEPLLHIQNVDFEDEGTYECEAENIKGR-DTYQGRIII 89

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.2 bits (150), Expect = 4e-14
 Identities = 23/99 (23%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-----KSLEGFSI 63
           P I   P +    VR G ++ L  K +G    +  W K    +   E      S  G  +
Sbjct: 1   PQIIQFPED--QKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKL 58

Query: 64  TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP 102
           T+    +   G Y     N +G      + L V+ K  P
Sbjct: 59  TILAARQEHCGCYTLLVENKLGS-RQAQVNLTVVDKPDP 96

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (142), Expect = 4e-13
 Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 14 SPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS-------GEKSLEGFSITLE 66
          +P    LTV +G  + L C   G   P I W K  + + +         +      ++L+
Sbjct: 2  APVK--LTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLK 59

Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           V+R  AG Y C   +G    ++  + L V
Sbjct: 60 SVERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.5 bits (143), Expect = 4e-13
 Identities = 26/94 (27%), Positives = 38/94 (40%), Gaps = 9/94 (9%)

Query: 8  PPSIRTSPSNGQLTVRKGG---TITLECKASGNPVPSIIWSKKDSSLPSGEKS----LEG 60
           P     P++      +G     +TL C+A  NP  +  W    + L  G  S    + G
Sbjct: 4  GPVFEEQPAH--TLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG 61

Query: 61 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL 94
            +    V    AG YQC ATN  G  V+ + +L
Sbjct: 62 DLVISNPVKAKDAGSYQCVATNARGTVVSREASL 95

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 9e-13
 Identities = 23/90 (25%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
           P +      G  T  +    T  C+A GNP+P +   K  +                  
Sbjct: 2  GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPL--------PIGESVT 53

Query: 68 VDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
          V R   G Y C A +  G+ VT ++T+ VL
Sbjct: 54 VTRDLEGTYLCRARSTQGE-VTREVTVNVL 82

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 2e-12
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 9/100 (9%)

Query: 6  MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLE 59
          M  P I     +   TV +G       +  G P P   W K    +   ++         
Sbjct: 2  MEAPKIFERIQS--QTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDN 59

Query: 60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
             + +  V    +      A N  G+  +    L V  K
Sbjct: 60 VCELVIRDVTGEDSASIMVKAINIAGE-TSSHAFLLVQAK 98

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 57.6 bits (138), Expect = 2e-12
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 12/100 (12%)

Query: 5  QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDS-------SLPSGEKS 57
          + VP  +        +  + G    + C    NP+    + K             +    
Sbjct: 3  EPVPQYVSKD-----MMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNR 57

Query: 58 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
            G  +  +       GVY C   NGVG P    + L V+
Sbjct: 58 TSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 97

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 56.8 bits (136), Expect = 3e-12
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWS-----KKDSSLPSGEKSLEGFSITL 65
          I T P +  +TV +G +    C   G PVP++ W         S+      +    +  +
Sbjct: 2  ILTKPRS--MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEI 59

Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
            V     G Y     N  G     + TL +
Sbjct: 60 SSVQASDEGNYSVVVENSEGK-QEAEFTLTI 89

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 4e-12
 Identities = 25/143 (17%), Positives = 44/143 (30%), Gaps = 20/143 (13%)

Query: 8   PPSIRTSPSNGQ---LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSIT 64
           PP I           + V  G  + L+   SG+P P++IW K  +            +  
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPE 63

Query: 65  LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAG 124
                       +          V       +                  +E  ++   G
Sbjct: 64  DTGDSDEWVFDKKLLCETEGRVRVETTKDRSIFT----------------VEGAEKEDEG 107

Query: 125 VYQCTATNGVGDPVTVDMTLEVL 147
           VY  T  N VG+   V++T++V+
Sbjct: 108 VYTVTVKNPVGE-DQVNLTVKVI 129

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 56.4 bits (135), Expect = 4e-12
 Identities = 23/89 (25%), Positives = 34/89 (38%), Gaps = 4/89 (4%)

Query: 9  PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS-GEKSLEGFSITLEK 67
          P      ++       G  +   C ASG P P++ W +    L S     + G  +   K
Sbjct: 2  PDWLDVITD--TEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSK 59

Query: 68 VDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          +    +G+YQC A N  G  V     L V
Sbjct: 60 LVLEDSGMYQCVAENKHGT-VYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 32.9 bits (74), Expect = 0.003
 Identities = 17/70 (24%), Positives = 24/70 (34%), Gaps = 4/70 (5%)

Query: 77  QCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD 136
            C A+   G P      L     +       + G  +   K+    +G+YQC A N  G 
Sbjct: 22  SCVAS---GKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGT 78

Query: 137 PVTVDMTLEV 146
            V     L V
Sbjct: 79  -VYASAELTV 87

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 56.1 bits (134), Expect = 9e-12
 Identities = 24/108 (22%), Positives = 31/108 (28%), Gaps = 21/108 (19%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---------- 57
           P      P+N   +   GG +   CK   +  P I W K      S              
Sbjct: 5   PILQAGLPAN--ASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLK 62

Query: 58  --------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
                    E   + +  V    AG Y C A N +G        L VL
Sbjct: 63  AAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGI-SFHSAWLTVL 109

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 55.7 bits (133), Expect = 1e-11
 Identities = 21/99 (21%), Positives = 32/99 (32%), Gaps = 8/99 (8%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGFSI 63
           P     P      V +G +    C+   +  P + W K D  L    K     +   + +
Sbjct: 2   PRFIVKPYG--TEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL 59

Query: 64  TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILP 102
           T+ +V     G Y   A N  G      + L V     P
Sbjct: 60  TINRVKGDDKGEYTVRAKNSYGT-KEEIVFLNVTRHSEP 97

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (131), Expect = 2e-11
 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 3/90 (3%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKSLEGFSITLE 66
          P  +       Q +VR G  +T  C A S +P  +++W++  +             +T+ 
Sbjct: 1  PIMVTVEEQRSQ-SVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIR 59

Query: 67 KVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           V    AG Y CT +N          TL V
Sbjct: 60 NVQPSDAGTYVCTGSNMFAM-DQGTATLHV 88

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 54.9 bits (131), Expect = 2e-11
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 9/96 (9%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGF----- 61
          V P    +  +  + V +G     +CK  G P P ++W K D+ +         +     
Sbjct: 7  VKPYFTKTILD--MEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGN 64

Query: 62 -SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           S+T+ +V       Y C A N +G+  T    L V
Sbjct: 65 CSLTISEVCGDDDAKYTCKAVNSLGE-ATCTAELLV 99

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 2e-10
 Identities = 22/105 (20%), Positives = 35/105 (33%), Gaps = 17/105 (16%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKS-------- 57
           VPPS  T       +V  G    L C    G+P     W K   S+ + +          
Sbjct: 1   VPPSKPTISVPS--SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNS 58

Query: 58  -----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM-TLEV 96
                 +   +  + V    +G Y C A NG G  +  +   ++ 
Sbjct: 59  SFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.8 bits (123), Expect = 2e-10
 Identities = 15/93 (16%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 9  PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SLEGFSIT 64
             + +P+      ++G    + C    +  P+IIW  K   +   +      L    + 
Sbjct: 2  LMFKNAPTP--QEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ 59

Query: 65 LEKVDRHQAGVYQCTATNGV-GDPVTVDMTLEV 96
          +  + +   G Y+C       G+    D+ + V
Sbjct: 60 IRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 3e-10
 Identities = 23/104 (22%), Positives = 33/104 (31%), Gaps = 16/104 (15%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEKS-------- 57
           VPPS  T       +   G    L C    G+P     W K    +P+  KS        
Sbjct: 1   VPPSKPTVNIPS--SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSS 58

Query: 58  ----LEGFSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEV 96
                    +  + +     G Y C A NG G    +  + +E 
Sbjct: 59  YVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA 102

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 50.4 bits (119), Expect = 9e-10
 Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 8/95 (8%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIW-----SKKDSSLPSGEKSLEGF 61
          + P I T+     + ++ G T  LE    G P P+  W         +     +      
Sbjct: 1  LKPKILTASRK--IKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTT 58

Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          SI      R  +G Y+    N +G+       + V
Sbjct: 59 SIFFPSAKRADSGNYKLKVKNELGE-DEAIFEVIV 92

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 50.4 bits (119), Expect = 1e-09
 Identities = 17/94 (18%), Positives = 30/94 (31%), Gaps = 7/94 (7%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK-----DSSLPSGEKSLEGFS 62
           P ++  P+   +  R+     LEC   GN        KK     +    +     +  S
Sbjct: 2  YPVLKDQPAE--VLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS 59

Query: 63 ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          +   +      G YQC A    G   +  ++   
Sbjct: 60 LVFLRPQASDEGHYQCFAETPAGVASSRVISFRK 93

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 2e-09
 Identities = 15/85 (17%), Positives = 24/85 (28%), Gaps = 8/85 (9%)

Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKK--------DSSLPSGEKSLEGFSITLEKVDRH 71
          + V  G   T +C A G  V       +           +          S  +    + 
Sbjct: 11 VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKR 70

Query: 72 QAGVYQCTATNGVGDPVTVDMTLEV 96
           AG Y+C      G  ++    L V
Sbjct: 71 DAGKYRCMIRTEGGVGISNYAELVV 95

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (116), Expect = 3e-09
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 16/102 (15%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSII------------WSKKDSSLPSGE 55
           PP ++   S+    + +G T  L CK+   P  +                    S     
Sbjct: 2   PPRVKAVKSS--EHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS 59

Query: 56  KSLEGFSITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEV 96
            S     + +E ++     G Y+C  T+  G      +TL V
Sbjct: 60  SSQGRSELHIENLNMEADPGQYRCNGTSSKGS-DQAIITLRV 100

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 6e-09
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 11/94 (11%)

Query: 21  TVRKGGTITLEC------KASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQ 72
            +   G   L C      K   N +P + W K    L       S     + +  V    
Sbjct: 10  KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKH 69

Query: 73  AGVYQCTATN---GVGDPVTVDMTLEVLCKILPS 103
            G Y C A+    G   P+T  +    L +  P+
Sbjct: 70  RGNYTCHASYTYLGKQYPITRVIEFITLEENKPT 103

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 6e-09
 Identities = 17/92 (18%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS---GEKSLEGFSIT 64
           P+   +     LT   G ++TL C        + +                +  G  + 
Sbjct: 6  CPAQEVARGV--LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLL 63

Query: 65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          L  V  H +G Y C          TV + ++V
Sbjct: 64 LRSVQLHDSGNYSCYRAGRPAG--TVHLLVDV 93

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 45.7 bits (107), Expect = 4e-08
 Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 7/85 (8%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEK 67
             +   P     +V +  ++TL+C+ + +P  +      + SL S +      S  ++ 
Sbjct: 5  KAVVFLEPQW--YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA----SSYFIDA 58

Query: 68 VDRHQAGVYQCTATNGVG-DPVTVD 91
             + +G Y+C        DPV ++
Sbjct: 59 ATVNDSGEYRCQTNLSTLSDPVQLE 83

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 9e-08
 Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 11/88 (12%)

Query: 21  TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----------EKSLEGFSITLEKVD 69
           ++  G    LEC          +   K +                EK++  F +  E V 
Sbjct: 14  SILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVL 73

Query: 70  RHQAGVYQCTATNGVGDPVTVDMTLEVL 97
            +  G Y+C+A        +   TL V 
Sbjct: 74  PNDNGSYRCSANFQSNLIESHSTTLYVT 101

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-07
 Identities = 14/78 (17%), Positives = 30/78 (38%), Gaps = 2/78 (2%)

Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQC 78
           L  ++G TI L C +  +     +   ++        S    + ++ + +   +G Y C
Sbjct: 9  HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF--SRSDPNFSIPQANHSHSGDYHC 66

Query: 79 TATNGVGDPVTVDMTLEV 96
          T   G     +  +T+ V
Sbjct: 67 TGNIGYTLYSSKPVTITV 84

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 4e-07
 Identities = 15/73 (20%), Positives = 24/73 (32%), Gaps = 8/73 (10%)

Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRHQ 72
           T   G  + LEC+ S     ++ W K    +  G K         +   + +E   +  
Sbjct: 10 TTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKAD 68

Query: 73 AGVYQCTATNGVG 85
          A  Y    T G  
Sbjct: 69 AAEYSVMTTGGQS 81

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 5e-07
 Identities = 19/88 (21%), Positives = 30/88 (34%), Gaps = 5/88 (5%)

Query: 9  PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKV 68
          P     P +  L V       L C+A G P P  I   + ++   G          L   
Sbjct: 2  PFFTVEPKD--LAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP---APSPSVLNVT 56

Query: 69 DRHQAGVYQCTATNGVGDPVTVDMTLEV 96
             Q+ ++ C A N  G   +   T+ +
Sbjct: 57 GVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 9e-07
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 5/92 (5%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECK-ASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL 65
          V P     P    + V  G +  L C+ A  +   S+ W   D+SL + +       +T+
Sbjct: 1  VKPLQVEPPEP-VVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTV 59

Query: 66 EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
                 AG   C  + G     T   T+++L
Sbjct: 60 RNASLSAAGTRVCVGSCGGR---TFQHTVQLL 88

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-06
 Identities = 12/84 (14%), Positives = 24/84 (28%), Gaps = 7/84 (8%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASG---NPVPSIIWSKKDSSLPSGEKSLEGFSI 63
           P  +  +P         G  +TL C+  G       +++  + +  L       E   +
Sbjct: 3  TPERVELAPLP--SWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEV 60

Query: 64 TLE--KVDRHQAGVYQCTATNGVG 85
          T        H    + C     + 
Sbjct: 61 TTTVLVRRDHHGAQFSCRTELDLR 84

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (99), Expect = 1e-06
 Identities = 13/83 (15%), Positives = 23/83 (27%), Gaps = 13/83 (15%)

Query: 29  TLECKASGNPVPSIIWSKKDSSLPSGE------------KSLEGFSITLEKVDRHQAGVY 76
            +     G P PS+ W    S L                +++    + L +      G Y
Sbjct: 19  CIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY 78

Query: 77  QCTATNGVGDPVTVDMTLEVLCK 99
              A N  G   +  +    +  
Sbjct: 79  TLLAANPFGQ-ASASIMAAFMDN 100

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 2e-06
 Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 16/104 (15%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP-------------SG 54
             ++ +S    ++ + +   + L C  SG   P + W                       
Sbjct: 4   SVTVHSSEP--EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYED 61

Query: 55  EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPV-TVDMTLEVL 97
             +     IT + V R   G Y C  +   G+    V + L VL
Sbjct: 62  RVTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (96), Expect = 2e-06
 Identities = 18/93 (19%), Positives = 39/93 (41%), Gaps = 6/93 (6%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL- 65
            P ++ + +    TV++  ++TL C ++             S   +   +L   +  L 
Sbjct: 4  TQPFLQVTNT----TVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILR 59

Query: 66 -EKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
           + + R  AG YQC  +N V    +  + L+++
Sbjct: 60 IDPIKREDAGEYQCEISNPVSVRRSNSIKLDII 92

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (92), Expect = 9e-06
 Identities = 21/109 (19%), Positives = 33/109 (30%), Gaps = 15/109 (13%)

Query: 6   MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG---------EK 56
             PP +  S    +L +       +E    GNP P++ W      L            E 
Sbjct: 3   YYPPRV-VSLEEPELRLE----HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 57

Query: 57  SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGE 105
            +    +   K   +  G Y   A N +G      +    L +  P  E
Sbjct: 58  EISEGCLLFNKPTHYNNGNYTLIAKNPLGT-ANQTINGHFLKEPFPVDE 105

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 1e-05
 Identities = 20/95 (21%), Positives = 28/95 (29%), Gaps = 19/95 (20%)

Query: 9  PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKV 68
          P I  SP+N  + V  G  I L C  +G       W    S +   +  L     ++E  
Sbjct: 2  PVI-VSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 69 D------------------RHQAGVYQCTATNGVG 85
                             R     + C A N  G
Sbjct: 61 ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHG 95

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 1e-05
 Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 2/78 (2%)

Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQC 78
          +   ++   I L C +  N     +   ++            F I   K     +G Y C
Sbjct: 11 RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIP--KATLKDSGSYFC 68

Query: 79 TATNGVGDPVTVDMTLEV 96
              G  +  +  + + +
Sbjct: 69 RGLVGSKNVSSETVNITI 86

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.3 bits (90), Expect = 2e-05
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 11/95 (11%)

Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSII---------WSKKDSSLPSGEKSLEGF 61
          +   PS     +  G +    C+ +G+     I          S     +       +  
Sbjct: 3  VDIVPSQ--GEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 60

Query: 62 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
          ++T+   +   AG+Y+C  T   G      + +++
Sbjct: 61 TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKI 95

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (90), Expect = 2e-05
 Identities = 15/103 (14%), Positives = 27/103 (26%), Gaps = 16/103 (15%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP----------SGEK 56
            P+I T   +            +     GNP P++ W    + L               
Sbjct: 3  FAPTI-TFLESPT----SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 57 SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK 99
          +     + L+       G Y   A N  G      ++   +  
Sbjct: 58 TEYHGCLQLDNPTHMNNGDYTLIAKNEYGK-DEKQISAHFMGW 99

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 2e-05
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS---GEKSLEGFSIT 64
           P+++    N   +V  G  + L C+  G  +    W   +    +       L    +T
Sbjct: 2  VPTLKVQVPN--ASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLT 59

Query: 65 LEKVDR-HQAGVYQCTATNGVGDPVTVDMTLEV 96
          L  V          C A N VG    V + + V
Sbjct: 60 LANVTSDLNRKNVTCWAENDVGR-AEVSVQVNV 91

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (89), Expect = 2e-05
 Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 19/94 (20%)

Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG---------------EKSLEGFSI 63
          Q+     G +T    ++  P+  ++W K+   +                         S+
Sbjct: 4  QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 64 TLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL 97
          T+  +       Y+  + N      T+   L VL
Sbjct: 63 TIYNLTSSDEDEYEMESPNITD---TMKFFLYVL 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 3e-05
 Identities = 13/81 (16%), Positives = 18/81 (22%), Gaps = 8/81 (9%)

Query: 8  PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL----EGFSI 63
            +           V KG  I L  + +      + W K    +            G   
Sbjct: 5  STAF-QKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGAKR 62

Query: 64 TLEKVDRHQ--AGVYQCTATN 82
          TL            YQC    
Sbjct: 63 TLTISQCSLADDAAYQCVVGG 83

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 6e-05
 Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 20/106 (18%)

Query: 8   PPSIRTSPSNGQLTVRKGGTITLECKASGNPV---PSIIWSKKDSSLPS----------- 53
                  P +    V  GG+IT   + +G  +   P + W K      S           
Sbjct: 4   IGLFVMRPQD--GEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHD 61

Query: 54  ---GEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                  +  F + +        G Y+C  +         +  L V
Sbjct: 62  SYDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKF-DCSNFNLTV 106

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.7 bits (86), Expect = 6e-05
 Identities = 18/82 (21%), Positives = 25/82 (30%), Gaps = 3/82 (3%)

Query: 19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITL--EKVDRHQAGVY 76
          Q   + GGT  L+C    N        +         K        L    +    +GVY
Sbjct: 6  QHFFKHGGTAELKCSQKSNLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVY 65

Query: 77 QCTATNGVG-DPVTVDMTLEVL 97
          QC +   V    V   +   VL
Sbjct: 66 QCLSEERVKNKTVFQVVAKHVL 87

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 9e-05
 Identities = 15/86 (17%), Positives = 31/86 (36%), Gaps = 7/86 (8%)

Query: 9  PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKV 68
            ++  P    + V +  ++TL C+ + +P    I    + +L               K 
Sbjct: 5  AVLKLEPQW--INVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQ----PSYRFKA 58

Query: 69 DRHQAGVYQCTATNGVG-DPVTVDMT 93
          + + +G Y C        DPV + + 
Sbjct: 59 NNNDSGEYTCQTGQTSLSDPVHLTVL 84

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 1e-04
 Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 7/84 (8%)

Query: 20 LTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLEGF-----SITLEKVDRHQA 73
          L           C  +      +I W K DS  P   +           +         +
Sbjct: 12 LVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDS 71

Query: 74 GVYQCTATNGVGDPVTVDMTLEVL 97
          G Y C   N     + + ++ + +
Sbjct: 72 GHYYCVVRNSSYC-LRIKISAKFV 94

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 1e-04
 Identities = 16/78 (20%), Positives = 24/78 (30%), Gaps = 2/78 (2%)

Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCT 79
            V +G  + L C    N     +   KD             SIT        +G Y CT
Sbjct: 10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISIT--NATVEDSGTYYCT 67

Query: 80 ATNGVGDPVTVDMTLEVL 97
                D  +  + + V+
Sbjct: 68 GKVWQLDYESEPLNITVI 85

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.6 bits (83), Expect = 2e-04
 Identities = 24/140 (17%), Positives = 36/140 (25%), Gaps = 40/140 (28%)

Query: 9   PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKV 68
            S+ T+ S+  + V +  +I L C  SG   P + W                        
Sbjct: 2   GSVYTAQSD--VQVPENESIKLTCTYSGFSSPRVEWKFVQ-------------------- 39

Query: 69  DRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQC 128
                               T  +          +   +     IT   V R   G Y C
Sbjct: 40  -----------------GSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTC 82

Query: 129 TATNGVGDPV-TVDMTLEVL 147
             +   G     V + L VL
Sbjct: 83  MVSEEGGQNYGEVSIHLTVL 102

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 36.6 bits (83), Expect = 2e-04
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 8/85 (9%)

Query: 7  VPPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEK-----SLEG 60
          +            + + +G  +   C      P  S  W   +             S   
Sbjct: 3  LQEFSAEERDP--VKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTT 60

Query: 61 FSITLEKVDRHQAGVYQCTATNGVG 85
           ++ + K +    G Y C AT+ + 
Sbjct: 61 GNLYIAKTEASDLGNYSCFATSHID 85

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 3e-04
 Identities = 13/71 (18%), Positives = 19/71 (26%), Gaps = 6/71 (8%)

Query: 20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-----EKSLEGFSITLEKVDRHQAG 74
          + V  G T   E + S  P     W  K   L +       +  +   + L        G
Sbjct: 11 VEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTG 69

Query: 75 VYQCTATNGVG 85
               A N   
Sbjct: 70 EVSFQAANAKS 80

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (80), Expect = 4e-04
 Identities = 19/88 (21%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 11 IRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL--EGFSITLEKV 68
          I T+P + +   + G +++L C  +G   P   W  +  S  +G+ +      ++T+  V
Sbjct: 3  IETTPES-RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPV 61

Query: 69 DRHQAGVYQCTATNGVGDPVTVDMTLEV 96
                 Y CTAT      +   + +E+
Sbjct: 62 SFGNEHSYLCTATCESR-KLEKGIQVEI 88

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 7e-04
 Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 17/103 (16%)

Query: 7   VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSL------------PSG 54
            PP I ++ +        G    ++C     P P  I      ++               
Sbjct: 6   GPPIISSTQT---QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 62

Query: 55  EKSLEGFSITLEKVDR-HQAGVYQCTATNGVGDPVTVDMTLEV 96
            +     ++T+  + R     +Y CTA N  G   T  + L+ 
Sbjct: 63  TEEGVISTLTISNIVRADFQTIYNCTAWNSFGS-DTEIIRLKE 104

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 16/86 (18%), Positives = 30/86 (34%), Gaps = 7/86 (8%)

Query: 9  PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKV 68
          P +  +P      + KG  +TL C  +     S      + SL          S+ +   
Sbjct: 2  PKVSLNPPW--NRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN----SSLNIVNA 55

Query: 69 DRHQAGVYQCTATNGVG-DPVTVDMT 93
              +G Y+C        +PV +++ 
Sbjct: 56 KFEDSGEYKCQHQQVNESEPVYLEVF 81

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.9 bits (76), Expect = 0.001
 Identities = 14/85 (16%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 13 TSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQ 72
          T+ S+    + +G ++TL  ++     PS+           G       ++++ +++   
Sbjct: 4  TANSD--THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGG-----KTLSVSQLELQD 56

Query: 73 AGVYQCTATNGVGDPVTVDMTLEVL 97
          +G + CT        V   + + VL
Sbjct: 57 SGTWTCTVLQNQKK-VEFKIDIVVL 80

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.2 bits (77), Expect = 0.002
 Identities = 18/145 (12%), Positives = 38/145 (26%), Gaps = 32/145 (22%)

Query: 3   QLQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFS 62
           Q +++ P          +    G    L C+ S     + +                   
Sbjct: 2   QFRVIGPG-------HPIRALVGDEAELPCRISPGKNATGME------------------ 36

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKILPSGEKSLEG-FSITLEKVDRH 121
                V  +++   +       G     +   E   +     E   EG  ++ ++ V   
Sbjct: 37  -----VGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFS 91

Query: 122 QAGVYQCTATNGVGDPVTVDMTLEV 146
             G Y C   +         + L+V
Sbjct: 92  DEGGYTCFFRDHSYQ-EEAAVELKV 115

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 20/94 (21%), Positives = 30/94 (31%), Gaps = 18/94 (19%)

Query: 20  LTVRKGGTITLECKASGNPV---PSIIWSK--------------KDSSLPSGEKSLEGFS 62
            TV+ G  IT   K     +   P+I W K              +          +  F 
Sbjct: 10  GTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFE 69

Query: 63  ITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
           + + K   + AG Y+C  T       +    LEV
Sbjct: 70  MQIIKAKDNFAGNYRCEVTYKDKF-DSCSFDLEV 102

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 33.1 bits (74), Expect = 0.004
 Identities = 19/89 (21%), Positives = 26/89 (29%), Gaps = 13/89 (14%)

Query: 21  TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSI-------------TLEK 67
           T  +G    L+C         +I  KK  S       +  F                + K
Sbjct: 13  TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTK 72

Query: 68  VDRHQAGVYQCTATNGVGDPVTVDMTLEV 96
            D      Y CTA N   D   V +  E+
Sbjct: 73  EDVSDIYKYVCTAKNAAVDEEVVLVEYEI 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.72
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.68
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.67
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.67
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.66
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.64
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.64
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.64
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.64
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.63
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.63
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.61
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.6
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.59
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.58
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.58
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.58
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.57
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.57
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.54
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.53
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.53
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.51
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.51
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.51
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.5
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.5
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.49
d2avga1	110	Cardiac myosin binding protein C, different domain	99.49
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.49
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.48
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.47
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.44
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.41
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.41
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.4
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.39
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.39
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.39
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.39
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.38
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.36
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.35
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.33
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.32
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.31
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.31
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.3
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.29
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.28
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.22
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.15
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.13
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	99.13
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.12
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.11
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.11
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.1
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.09
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.07
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.06
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.05
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.03
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.0
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	98.99
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	98.99
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	98.98
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.95
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	98.94
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	98.94
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.93
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	98.92
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	98.92
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	98.92
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.91
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	98.88
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	98.87
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	98.86
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	98.84
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	98.84
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	98.82
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	98.82
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.82
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	98.81
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	98.81
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	98.8
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	98.77
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.76
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	98.76
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	98.74
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.73
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.72
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.72
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.72
d2avga1	110	Cardiac myosin binding protein C, different domain	98.71
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.71
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	98.7
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.7
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.7
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.7
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	98.69
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.68
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	98.67
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.67
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	98.63
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	98.6
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.59
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.57
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.56
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.55
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	98.5
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.48
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.46
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	98.45
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.45
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.43
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.43
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.42
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.41
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.4
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.4
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.39
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.37
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.37
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.37
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.37
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	98.34
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.33
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.32
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	98.32
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.31
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.31
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.3
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	98.28
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.28
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.28
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.27
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.26
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.24
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	98.23
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	98.18
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.15
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.14
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.14
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.1
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.07
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.06
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.06
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.05
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.05
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.05
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.04
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.04
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.04
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.02
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.01
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.01
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.0
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.0
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.0
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	97.99
d1pd6a_	94	Cardiac myosin binding protein C, different domain	97.99
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.98
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	97.98
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.97
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	97.96
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	97.96
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	97.95
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	97.95
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.95
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	97.94
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.93
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.92
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	97.92
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.92
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.89
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	97.89
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	97.88
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.88
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.88
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.83
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	97.82
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.8
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	97.8
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	97.79
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.79
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	97.78
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	97.76
d1gxea_	130	Cardiac myosin binding protein C, different domain	97.76
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	97.76
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	97.75
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.74
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.71
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.71
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	97.7
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.69
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.67
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.66
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	97.66
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.66
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.66
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.65
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.65
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.64
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.63
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.63
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	97.63
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	97.62
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.62
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.62
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.61
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.6
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.59
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.58
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	97.58
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.58
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.57
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.56
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.56
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.55
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	97.53
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.53
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.53
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.5
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.49
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	97.44
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.43
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.42
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.41
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.4
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.39
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.38
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.37
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.33
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.32
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.31
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.26
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.22
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.22
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.22
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.2
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.17
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.17
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.16
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.15
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.12
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.11
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.1
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.1
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.1
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.1
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.09
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.08
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.08
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.01
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.99
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	96.97
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.96
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	96.94
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	96.93
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	96.92
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	96.92
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	96.88
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	96.88
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.84
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.8
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	96.8
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	96.79
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	96.76
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	96.75
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	96.75
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	96.75
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	96.74
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	96.68
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.68
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.67
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.65
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	96.65
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.64
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	96.61
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	96.56
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	96.56
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.56
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	96.54
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.54
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.52
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.49
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	96.49
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	96.47
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.46
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.44
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	96.43
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	96.42
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	96.42
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.41
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.4
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	96.4
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	96.38
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	96.38
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.37
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	96.37
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	96.36
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	96.35
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	96.34
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.32
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.32
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	96.32
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.3
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.3
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	96.28
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.25
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	96.25
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.23
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.23
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.22
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	96.22
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.21
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	96.2
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	96.17
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	96.17
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	96.16
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	96.16
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	96.15
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	96.15
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.14
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.14
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	96.14
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.14
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.13
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	96.12
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.09
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.09
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	96.07
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.07
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.07
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	96.07
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	96.06
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.06
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.06
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.05
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.05
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.04
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.04
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.04
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	96.04
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.03
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.02
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	96.02
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.02
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	96.02
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.01
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.01
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	96.01
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	96.0
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	95.99
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.99
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	95.98
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.98
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	95.98
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.96
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	95.96
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	95.95
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	95.92
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	95.92
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	95.91
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	95.9
d8faba1	103	Immunoglobulin light chain lambda variable domain,	95.89
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.88
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	95.88
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	95.87
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	95.86
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	95.85
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	95.82
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	95.82
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	95.82
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	95.8
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	95.8
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.76
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	95.74
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	95.69
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	95.65
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	95.64
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	95.64
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	95.62
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	95.62
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	95.62
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	95.61
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.61
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	95.57
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.53
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	95.53
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	95.42
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	95.41
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	95.39
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	95.39
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	95.34
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	95.32
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	95.3
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	95.18
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	95.14
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	95.1
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	95.1
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	95.06
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	95.06
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	94.95
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	94.92
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	94.91
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	94.82
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	94.79
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	94.76
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	94.74
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	94.62
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	94.43
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	94.28
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	94.17
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	93.86
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	93.77
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	93.67
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	93.38
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	93.25
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	93.03
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	92.79
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	91.91
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	91.53
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	91.39
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	91.36
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.33
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	91.23
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	91.1
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	91.03
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	90.75
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	90.59
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	90.51
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	90.48
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	90.43
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	90.41
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	90.12
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	90.05
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	90.03
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	90.0
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	89.96
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	89.93
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	89.88
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	89.85
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	89.83
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	89.83
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	89.81
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	89.6
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	89.58
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	89.44
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	89.44
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	89.28
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	89.27
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	89.23
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	89.09
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	89.05
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	88.99
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	88.99
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	88.83
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	88.71
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	88.68
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	88.59
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	88.51
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	88.46
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	88.38
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	88.17
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	88.15
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	88.11
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	88.09
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	88.09
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	87.94
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	87.92
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	87.87
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	87.77
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	87.74
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	87.72
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	87.66
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	87.43
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	87.38
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	87.01
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	86.81
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	86.5
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	86.3
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	85.57
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	85.21

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.72  E-value=1.5e-17  Score=87.84  Aligned_cols=87  Identities=28%  Similarity=0.638  Sum_probs=71.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      +|.|...+.. .+.+..|+.+.|.|.+.|.|.|.+.|++++..+...........|.|.++...|+|.|.|.+.|..|..
T Consensus         2 aP~f~~~p~~-~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~   80 (89)
T d1biha4           2 APKYEQKPEK-VIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHGDK   80 (89)
T ss_dssp             EEEEEECCCS-EEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEEETTEEEESSCCSTTCEEEEEEEEETTEEE
T ss_pred             CCeEEECCCC-CEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEEeeeeEEECCCChhhCEEEEEEEEECCCEE
Confidence            5777777653 457788999999999999999999999999988766555566779999999999999999999988764


Q ss_pred             eEEeEEEEE
Q psy7616          88 VTVDMTLEV   96 (147)
Q Consensus        88 ~~~~~~l~v   96 (147)
                       ...+.|.|
T Consensus        81 -~~~~~l~V   88 (89)
T d1biha4          81 -YFETLVQV   88 (89)
T ss_dssp             -EEEEEEEE
T ss_pred             -EEEEEEEE
Confidence             55555554

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.1e-17  Score=92.43  Aligned_cols=125  Identities=21%  Similarity=0.333  Sum_probs=74.3

Q ss_pred             EeCCceEEc---CCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616           6 MVPPSIRTS---PSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         6 ~~~p~~~~~---~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +.||.+...   ..+..+.+..|+.+.|.|.+.|.|.|.+.|++++..+............      .............
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~   75 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAP------EDTGDSDEWVFDK   75 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCC------CCCCCSSCCCCSC
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecc------cccccceeeecCC
Confidence            468887542   2333678999999999999999999999999988766432211000000      0000000000000


Q ss_pred             CCCCceEEeEEEEEeeeecCCCCccccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616          83 GVGDPVTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .........+.+          ........|.+.+++.+|+|.|+|.|.|.+|.. +..+.|.|+
T Consensus        76 ~~~~~~~~r~~~----------~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  129 (130)
T d1gxea_          76 KLLCETEGRVRV----------ETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKVI  129 (130)
T ss_dssp             CCCCSCSSSCEE----------EEETTEEEEECSCCCTTTCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             ceeeccCceEEE----------EECCCEEEEEECcCChhcCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            000000000000          000123458889999999999999999999988 889999986

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=4.1e-16  Score=84.16  Aligned_cols=92  Identities=24%  Similarity=0.371  Sum_probs=72.9

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEEeecC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      |.|...+.  ...+..|+.+.|.|.+.+.|.+.+.|++++..+......     .....|.|.++...|+|.|.|.+.|.
T Consensus         1 P~~~~~p~--~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   78 (101)
T d2cqva1           1 PQIIQFPE--DQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   78 (101)
T ss_dssp             CEESCCCC--SEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CeEEeeCC--cEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEEC
Confidence            34444443  668999999999999999999999999999888543321     13346999999999999999999999


Q ss_pred             CCCceEEeEEEEEeeeecCC
Q psy7616          84 VGDPVTVDMTLEVLCKILPS  103 (147)
Q Consensus        84 ~~~~~~~~~~l~v~~~~~~~  103 (147)
                      .|.. +..+.|.|...|..+
T Consensus        79 ~G~~-~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          79 LGSR-QAQVNLTVVDKPDPP   97 (101)
T ss_dssp             SCEE-ECCEEEEEECSCSCC
T ss_pred             CCEE-EEEEEEEEEecCCCc
Confidence            8875 778888888777654

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=1.8e-16  Score=83.97  Aligned_cols=88  Identities=33%  Similarity=0.465  Sum_probs=69.4

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      ++|.+....+. ...+..|+.+.|.|.+.|.|.|.+.|++++..... ........|.|.+++..|+|.|.|.+.|..|.
T Consensus         3 ~~P~i~~~~p~-~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~   80 (91)
T d1cs6a3           3 YAPSIKAKFPA-DTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-KWLSSEPLLHIQNVDFEDEGTYECEAENIKGR   80 (91)
T ss_dssp             EEEEEEECCCS-EEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC-CCSBSSSEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cCCeEEeeCCC-cEEEecCCcEEEEEEEEEccCCEEEEEecccccce-EeeeeeeEEEeCCCCccCCEEEEEEEEECCCE
Confidence            57777765432 67889999999999999999999999997765533 22345567999999999999999999998876


Q ss_pred             ceEEeEEEEEe
Q psy7616          87 PVTVDMTLEVL   97 (147)
Q Consensus        87 ~~~~~~~l~v~   97 (147)
                      . +..+.|.|.
T Consensus        81 ~-~~~~~l~V~   90 (91)
T d1cs6a3          81 D-TYQGRIIIH   90 (91)
T ss_dssp             E-EEEEEEEEE
T ss_pred             E-EEEEEEEEE
Confidence            4 566666654

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=1.7e-16  Score=83.73  Aligned_cols=86  Identities=26%  Similarity=0.477  Sum_probs=70.1

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      |.|...+.  ...+..|+.+.|.|.+.|.|.|.+.|++++..+..... ......|.|.++...|+|.|.|.+.|..|..
T Consensus         2 P~f~~~~~--~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~   79 (89)
T d1cs6a4           2 PDWLDVIT--DTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV   79 (89)
T ss_dssp             EEEEECCC--CEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEETTEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             CCeEEECC--CEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeeeeeeEEEEeecccCCEEEEEEEEeCCCEE
Confidence            66766666  56889999999999999999999999999988764433 3456789999999999999999999988764


Q ss_pred             eEEeEEEEEe
Q psy7616          88 VTVDMTLEVL   97 (147)
Q Consensus        88 ~~~~~~l~v~   97 (147)
                       ...+.|.|.
T Consensus        80 -~~~~~l~V~   88 (89)
T d1cs6a4          80 -YASAELTVQ   88 (89)
T ss_dssp             -EEEEEEEEE
T ss_pred             -EEEEEEEEE
Confidence             556666653

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=8.5e-16  Score=81.03  Aligned_cols=86  Identities=22%  Similarity=0.350  Sum_probs=68.3

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      |.+...++ ....+..|+++.|.|.+. +.|.+.+.|++++..+...........|.|.+++..|+|.|.|.+.|..|..
T Consensus         2 ~~v~~~~p-~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~   80 (89)
T d1gl4b_           2 IMVTVEEQ-RSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFAMD   80 (89)
T ss_dssp             EEEEECSC-CEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEEETTEEEECSCCGGGCEEEEEEEECSSCEE
T ss_pred             CEEEEcCC-CeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEeeceEEEEecCCcccCEEEEEEEEECCCEE
Confidence            44444433 256888999999999986 5678899999998877666666677889999999999999999999988864


Q ss_pred             eEEeEEEEE
Q psy7616          88 VTVDMTLEV   96 (147)
Q Consensus        88 ~~~~~~l~v   96 (147)
                       +..+.|.|
T Consensus        81 -~~~~~l~V   88 (89)
T d1gl4b_          81 -QGTATLHV   88 (89)
T ss_dssp             -EEEEEEEE
T ss_pred             -EEEEEEEE
Confidence             56666654

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.64  E-value=4.4e-16  Score=83.46  Aligned_cols=89  Identities=22%  Similarity=0.401  Sum_probs=69.9

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEEeec
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .|.|...+.  ...+..|+.+.|.|.+.|.|.+.+.|++++..+......     .....|.|.++...|+|.|.|.+.|
T Consensus         1 ~P~f~~~p~--~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   78 (97)
T d1koaa1           1 QPRFIVKPY--GTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKN   78 (97)
T ss_dssp             SCEEEECCC--CCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEE
T ss_pred             CCEEEEeCC--CEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEE
Confidence            477877776  458899999999999999999999999999887543221     1233689999999999999999999


Q ss_pred             CCCCceEEeEEEEEeee
Q psy7616          83 GVGDPVTVDMTLEVLCK   99 (147)
Q Consensus        83 ~~~~~~~~~~~l~v~~~   99 (147)
                      ..|.. +..+.|.|...
T Consensus        79 ~~G~~-~~~~~l~V~~~   94 (97)
T d1koaa1          79 SYGTK-EEIVFLNVTRH   94 (97)
T ss_dssp             TTEEE-EEEECCEEECS
T ss_pred             CCCEE-EEEEEEEEeec
Confidence            88764 55666666543

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.64  E-value=5.2e-16  Score=84.85  Aligned_cols=106  Identities=22%  Similarity=0.290  Sum_probs=66.9

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      +|.+....+ .+..+..|+++.|.|.+.+.|.|.+.|++++.........               .+.........    
T Consensus         4 ~P~i~~~~P-~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~---------------~~~~~~~~~~~----   63 (109)
T d2fdbp2           4 RPILQAGLP-ANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGP---------------DGLPYLKVLKA----   63 (109)
T ss_dssp             CCEECTTCS-CCEEECTTCCEEEEEEEECSSCCEEEEEEEC----------------------------CEEEECC----
T ss_pred             CCEEcCCCC-CCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceecc---------------CCceeEeeccc----
Confidence            566655432 3679999999999999999999999999986432111000               00000000000    


Q ss_pred             eEEeEEEEEeeeecCCCCccccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616          88 VTVDMTLEVLCKILPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus        88 ~~~~~~l~v~~~~~~~~~~~~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                       ..   .   ..      .......|.+.+++.+|+|.|+|.|.|..|.. ...+.|+|+
T Consensus        64 -~~---~---~~------~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L~Vl  109 (109)
T d2fdbp2          64 -AG---V---NT------TDKEIEVLYIRNVTFEDAGEYTCLAGNSIGIS-FHSAWLTVL  109 (109)
T ss_dssp             -EE---E---EE------TTEEEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             -ce---e---EE------ecCCcEEEEECCCCHHHCeEEEEEEEECCCEE-EEEEEEEEC
Confidence             00   0   00      00112347789999999999999999999988 889999986

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.64  E-value=1.6e-16  Score=85.65  Aligned_cols=90  Identities=30%  Similarity=0.599  Sum_probs=69.3

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-------eeeccceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      +||.+...+...+..+..|+++.|.|.+.|.|.|.+.|++++..+.....       ......|.|.+++..|+|.|.|.
T Consensus         2 vPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (100)
T d1qz1a3           2 VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCI   81 (100)
T ss_dssp             EEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEE
T ss_pred             cCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEE
Confidence            57888776654344567799999999999999999999999877643211       12345799999999999999999


Q ss_pred             eecCCCCceEEeEEEEEe
Q psy7616          80 ATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v~   97 (147)
                      +.|..|.. +..+.|.|.
T Consensus        82 a~N~~G~~-~~~~~l~V~   98 (100)
T d1qz1a3          82 AENKAGEQ-DASIHLKVF   98 (100)
T ss_dssp             EEETTEEE-EEEEEEEEE
T ss_pred             EEECCCEE-EEEEEEEEE
Confidence            99988764 666666654

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.1e-15  Score=78.72  Aligned_cols=82  Identities=23%  Similarity=0.432  Sum_probs=64.0

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      |.|...|.  ...+..|+++.|.|.+.|.|.| .+.|++++..+...    ..+.+.+......|+|.|.|.+.|..|..
T Consensus         2 P~f~~~P~--~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~----~~~~~~l~~~~~~d~G~Y~C~A~N~~G~~   75 (85)
T d1rhfa2           2 PFFTVEPK--DLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGP----APSPSVLNVTGVTQSTMFSCEAHNLKGLA   75 (85)
T ss_dssp             CEEEECCC--CEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCS----EESSEEEEECCCSSCEEEEEEEEETTEEE
T ss_pred             CcEEEeCC--cEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCC----CCcceEEecCCccccEEEEEEEEcCCCcE
Confidence            66777766  5688999999999999998887 89999999877543    22445677777889999999999988865


Q ss_pred             eEEeEEEEE
Q psy7616          88 VTVDMTLEV   96 (147)
Q Consensus        88 ~~~~~~l~v   96 (147)
                      .+..+.+.+
T Consensus        76 ~S~~~~v~V   84 (85)
T d1rhfa2          76 SSRTATVHL   84 (85)
T ss_dssp             ECCCEEEEE
T ss_pred             EEEEEEEEE
Confidence            445555554

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.63  E-value=7.6e-16  Score=83.23  Aligned_cols=91  Identities=25%  Similarity=0.467  Sum_probs=71.8

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee------eeccceEEEeecCCCCeEEE
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS------LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~g~y~   77 (147)
                      ....+|.|...+.  ...+..|+.+.|.|.+.+.|.|.+.|++++..+......      .....|.|.++...|.|.|.
T Consensus         4 ~p~~~P~f~~~~~--~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~   81 (102)
T d1fhga_           4 KPHVKPYFTKTIL--DMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYT   81 (102)
T ss_dssp             CCCEEEEEEECCC--CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEE
T ss_pred             CCCCCCeEEcCCC--cEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEE
Confidence            3446788877665  568899999999999999999999999999887644321      12346899999999999999


Q ss_pred             EEeecCCCCceEEeEEEEEe
Q psy7616          78 CTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        78 C~~~~~~~~~~~~~~~l~v~   97 (147)
                      |.+.|..|.. +..+.|.|.
T Consensus        82 C~a~N~~G~~-~~~~~L~V~  100 (102)
T d1fhga_          82 CKAVNSLGEA-TCTAELLVE  100 (102)
T ss_dssp             EEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEECCcEE-EEEEEEEEE
Confidence            9999988875 666666654

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.6e-15  Score=79.14  Aligned_cols=87  Identities=21%  Similarity=0.313  Sum_probs=65.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      +|.....+ .....+..|+++.|.|.+. +.|.+.+.|++.+.++.........+.|.|.+++..|+|.|.|.+.|..+.
T Consensus         2 kP~~i~~p-~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~   80 (90)
T d1gsma1           2 KPLQVEPP-EPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQSDTGRSVLTVRNASLSAAGTRVCVGSCGGRT   80 (90)
T ss_dssp             CSEEEESC-CSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCCEEEESSEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             cCcEEeCC-CCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeeeeeccCceeeEEcCccChhhCCcEEEEEEeCCCc
Confidence            34333333 3356788999999999874 678889999998887754444445678999999999999999999997765


Q ss_pred             ceEEeEEEEE
Q psy7616          87 PVTVDMTLEV   96 (147)
Q Consensus        87 ~~~~~~~l~v   96 (147)
                       .+..+.|.|
T Consensus        81 -~~~s~~l~V   89 (90)
T d1gsma1          81 -FQHTVQLLV   89 (90)
T ss_dssp             -EEEEEEEEE
T ss_pred             -EEEEEEEEE
Confidence             356665554

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=8e-16  Score=81.78  Aligned_cols=86  Identities=24%  Similarity=0.376  Sum_probs=67.8

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-----eeccceEEEeecCCCCeEEEEEeec
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-----LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-----~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +|.+...+.  .+.+..|+++.|.|.+.|.|.|.+.|++++..+......     .....|.|.++...|+|.|.|.+.|
T Consensus         2 ~P~i~~~~~--~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   79 (93)
T d1wiua_           2 KPKILTASR--KIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKN   79 (93)
T ss_dssp             CCEECCCCC--EEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEE
T ss_pred             CCeEEeCCC--cEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEE
Confidence            566655443  678999999999999999999999999999877543221     1234688999999999999999999


Q ss_pred             CCCCceEEeEEEEE
Q psy7616          83 GVGDPVTVDMTLEV   96 (147)
Q Consensus        83 ~~~~~~~~~~~l~v   96 (147)
                      ..|.. +..+.|.|
T Consensus        80 ~~G~~-~~~~~l~V   92 (93)
T d1wiua_          80 ELGED-EAIFEVIV   92 (93)
T ss_dssp             TTEEE-EEEEEEEE
T ss_pred             CCCEE-EEEEEEEE
Confidence            88874 66666654

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.60  E-value=2.5e-15  Score=80.56  Aligned_cols=87  Identities=18%  Similarity=0.293  Sum_probs=69.4

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee---e---eccceEEEeecCCCCeEEEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---L---EGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~---~---~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +|.|...+.  ...+..|+.+.|.|.+.|.|.|.+.|++++..+......   .   ....|.|.++...|.|.|.|.+.
T Consensus         4 aP~f~~~~~--~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   81 (98)
T d1g1ca_           4 APKIFERIQ--SQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAI   81 (98)
T ss_dssp             EEEEEECCC--CEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCeEecCCC--cEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEE
Confidence            677777665  568999999999999999999999999999887543321   1   12368999999999999999999


Q ss_pred             cCCCCceEEeEEEEEe
Q psy7616          82 NGVGDPVTVDMTLEVL   97 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~   97 (147)
                      |..|.. +..+.|.|.
T Consensus        82 N~~G~~-~~~~~L~V~   96 (98)
T d1g1ca_          82 NIAGET-SSHAFLLVQ   96 (98)
T ss_dssp             ETTEEE-EEEEEEEEE
T ss_pred             ECCcEE-EEEEEEEEE
Confidence            988875 666666654

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.59  E-value=8.5e-15  Score=78.31  Aligned_cols=78  Identities=22%  Similarity=0.430  Sum_probs=63.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-------eeeccceEEEeecCCCCeEEEEEeecCCCCceEEe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD   91 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   91 (147)
                      .+.+..|+.+.|.|.+.+.|.+.+.|++++..+.....       ......|.|.+++..|+|.|.|.+.|..|...+..
T Consensus        12 ~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s   91 (97)
T d1biha3          12 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHS   91 (97)
T ss_dssp             SEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEE
T ss_pred             CEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEE
Confidence            67899999999999999999999999999987743211       12344799999999999999999999988764556


Q ss_pred             EEEEE
Q psy7616          92 MTLEV   96 (147)
Q Consensus        92 ~~l~v   96 (147)
                      +.|.|
T Consensus        92 ~~L~V   96 (97)
T d1biha3          92 LKLTV   96 (97)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66665

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.4e-14  Score=76.41  Aligned_cols=78  Identities=21%  Similarity=0.350  Sum_probs=61.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ...+..|+.+.|.|.+.+.|.|.+.|++++..+.....  ....+.|.|.++...|+|.|.|.+.|..+.. +..+.|.|
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~v~V   88 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVEI   88 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeeeecCCcEEEEecccccccceEEEEEEeCCCEE-EEEEEEEE
Confidence            44667899999999999999999999998776543322  2245579999999999999999999988764 66666665


Q ss_pred             e
Q psy7616          97 L   97 (147)
Q Consensus        97 ~   97 (147)
                      .
T Consensus        89 ~   89 (90)
T d1vcaa2          89 Y   89 (90)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.5e-15  Score=77.87  Aligned_cols=79  Identities=27%  Similarity=0.436  Sum_probs=63.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-------eeccceEEEeecCCCCeEEEEEeecCCCCceEEe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-------LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVD   91 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~   91 (147)
                      .+.+..|+++.|.|.+.+.|.+.+.|++++..+......       .....|.|.+++..|+|.|.|.+.|..+...+..
T Consensus         5 ~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~   84 (91)
T d1rhfa1           5 KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQP   84 (91)
T ss_dssp             EEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCC
T ss_pred             eEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEE
Confidence            568899999999999999999999999999887543321       1233688999999999999999999888754556


Q ss_pred             EEEEEe
Q psy7616          92 MTLEVL   97 (147)
Q Consensus        92 ~~l~v~   97 (147)
                      +.|.|.
T Consensus        85 ~~l~V~   90 (91)
T d1rhfa1          85 VWLTVE   90 (91)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            666553

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.9e-15  Score=76.60  Aligned_cols=74  Identities=15%  Similarity=0.291  Sum_probs=60.7

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEeeee
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~~  100 (147)
                      .+..|++++|.|.+.|.|.|.+.|++++...     ......|.|.++...|+|.|.|.+.|..|.. ...+.+.|...|
T Consensus        10 ~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~-----~~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~-~~~~~v~V~~~~   83 (84)
T d2nxyb2          10 HLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-----IQGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVLAFQ   83 (84)
T ss_dssp             CEETTCCEEEEEECCTTCCCEEEEECTTCCE-----EEESSEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEECEECCC
T ss_pred             EEECCCeEEEEEEeEcCCchheEEEeecccc-----eeeeeeeeeeecccccccEEEEEEEeCCCEE-EEEEEEEEEecC
Confidence            6789999999999999999999999976543     3355678899999999999999999987764 666666665443

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.57  E-value=2.5e-15  Score=79.48  Aligned_cols=77  Identities=23%  Similarity=0.539  Sum_probs=63.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-----eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      .+.+..|+++.|.|.+.|.|.|.+.|++++..+.....     ......|.|.+++..|+|.|.|.+.|..|.. +..+.
T Consensus         8 ~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~   86 (91)
T d1tnna_           8 SMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQ-EAEFT   86 (91)
T ss_dssp             CEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBC-CEEEE
T ss_pred             CEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEE-EEEEE
Confidence            56889999999999999999999999999988754332     1234578999999999999999999988875 55665


Q ss_pred             EEE
Q psy7616          94 LEV   96 (147)
Q Consensus        94 l~v   96 (147)
                      |.|
T Consensus        87 l~V   89 (91)
T d1tnna_          87 LTI   89 (91)
T ss_dssp             EEC
T ss_pred             EEE
Confidence            554

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.2e-16  Score=80.45  Aligned_cols=83  Identities=27%  Similarity=0.356  Sum_probs=63.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      ++|++.....+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+...        +.+..++..|+|.|.|.+.|..|.
T Consensus         1 Y~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~--------~~~~~v~~~d~G~Y~C~A~N~~G~   72 (84)
T d2oz4a3           1 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI--------GESVTVTRDLEGTYLCRARSTQGE   72 (84)
T ss_dssp             EEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT--------TSCEECCGGGCEEEEEEEEETTEE
T ss_pred             CCCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee--------eeeeccccCCCCEEEEEEEcCCCE
Confidence            356664443334678999999999999999999999999988654321        224567889999999999998876


Q ss_pred             ceEEeEEEEEee
Q psy7616          87 PVTVDMTLEVLC   98 (147)
Q Consensus        87 ~~~~~~~l~v~~   98 (147)
                      . +..+.|.|..
T Consensus        73 ~-~~~~~l~V~~   83 (84)
T d2oz4a3          73 V-TREVTVNVLS   83 (84)
T ss_dssp             E-EEEEEEEEEC
T ss_pred             E-EEEEEEEEEC
Confidence            4 6677777654

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.54  E-value=1.1e-14  Score=77.49  Aligned_cols=84  Identities=23%  Similarity=0.383  Sum_probs=64.1

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCce----eeeccceEEEeecCCCCeEEEEEeec
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEK----SLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .|.|...|.  .+.+..|+.+.|.|.+.+.|.+ .+.|++++..+.....    ......|.|.++...|+|.|.|.+.|
T Consensus         2 ~P~i~~~p~--~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   79 (94)
T d1biha1           2 YPVLKDQPA--EVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAET   79 (94)
T ss_dssp             CCEECCCCS--EEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEE
T ss_pred             CCEEEecCC--cEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEe
Confidence            355655554  6789999999999999988866 6999999988754321    22456799999999999999999999


Q ss_pred             CCCCceEEeEE
Q psy7616          83 GVGDPVTVDMT   93 (147)
Q Consensus        83 ~~~~~~~~~~~   93 (147)
                      ..|...+..+.
T Consensus        80 ~~G~~~s~~v~   90 (94)
T d1biha1          80 PAGVASSRVIS   90 (94)
T ss_dssp             TTEEEECCCEE
T ss_pred             CCCEEEEEEEE
Confidence            88764333333

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=1.9e-14  Score=76.77  Aligned_cols=80  Identities=25%  Similarity=0.417  Sum_probs=63.4

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce---eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ..+..|+.++|.|.+.+ +.+.+.|++++..+.....   ......|.|.++...|.|.|.|.+.|..+...+..+.|.|
T Consensus        13 ~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V   91 (96)
T d1l6za2          13 TTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDI   91 (96)
T ss_dssp             SEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEE
T ss_pred             eEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEE
Confidence            47889999999998866 6678999999988754332   2245579999999999999999999988775456677877


Q ss_pred             eeee
Q psy7616          97 LCKI  100 (147)
Q Consensus        97 ~~~~  100 (147)
                      ..+|
T Consensus        92 ~~~P   95 (96)
T d1l6za2          92 IFDP   95 (96)
T ss_dssp             CCSC
T ss_pred             EcCC
Confidence            6655

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.53  E-value=1.1e-14  Score=77.81  Aligned_cols=76  Identities=26%  Similarity=0.538  Sum_probs=61.3

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce------eeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEE
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMT   93 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~   93 (147)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+.....      ......|.|.++...|+|.|+|.+.|..|.. +..+.
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~   93 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYH   93 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEE-EEEEE
Confidence            4677899999999999999999999999987753321      1234579999999999999999999988764 66666


Q ss_pred             EEE
Q psy7616          94 LEV   96 (147)
Q Consensus        94 l~v   96 (147)
                      |.|
T Consensus        94 l~V   96 (97)
T d3dara1          94 LDV   96 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            654

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=2e-14  Score=76.06  Aligned_cols=76  Identities=16%  Similarity=0.386  Sum_probs=60.2

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      +.|...|.  ...+..|+.+.|.|.+.|.|.|.+.|++++..+....    .....+.|.|.++...|+|.|.|.+.|..
T Consensus         2 ~~F~~~P~--~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~   79 (92)
T d1epfa2           2 LMFKNAPT--PQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILA   79 (92)
T ss_dssp             SEEEECCS--SEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTSCEEETTCCGGGCEEEEEEEEEGG
T ss_pred             cEEEEcCC--CEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeeeeEEECCCCHHhCEEEEEEEEECc
Confidence            34555555  5588999999999999999999999999987664322    12345579999999999999999999865


Q ss_pred             CC
Q psy7616          85 GD   86 (147)
Q Consensus        85 ~~   86 (147)
                      +.
T Consensus        80 ~~   81 (92)
T d1epfa2          80 RG   81 (92)
T ss_dssp             GT
T ss_pred             CC
Confidence            54

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=6.9e-15  Score=78.66  Aligned_cols=86  Identities=29%  Similarity=0.534  Sum_probs=63.8

Q ss_pred             eCCceEEcCCCCceEEeeC---CeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKG---GTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g---~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      ++|.|...|.  ...+..|   +++.|.|.+.|.|.|.+.|++++..+....    .......+.+..+...|+|.|.|.
T Consensus         3 ~~P~f~~~P~--~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~   80 (97)
T d1cs6a1           3 YGPVFEEQPA--HTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCV   80 (97)
T ss_dssp             EEEEEEECCC--CEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETTEEEEESCCHHHHCEEEEEE
T ss_pred             cCCEEEEeCC--CEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeeeeEEEEecccccCCEEEEEE
Confidence            5788887776  3455554   689999999999999999999988774322    122344577777888999999999


Q ss_pred             eecCCCCceEEeEEE
Q psy7616          80 ATNGVGDPVTVDMTL   94 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l   94 (147)
                      +.|..|...+..+.|
T Consensus        81 a~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          81 ATNARGTVVSREASL   95 (97)
T ss_dssp             EEETTEEEECCCEEE
T ss_pred             EEECCCEEEEEEEEE
Confidence            999988653444544

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.4e-15  Score=78.70  Aligned_cols=84  Identities=20%  Similarity=0.374  Sum_probs=66.1

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce---eeeccceEEEeecCCCCe-EEEEEeecC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK---SLEGFSITLEKVDRHQAG-VYQCTATNG   83 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~g-~y~C~~~~~   83 (147)
                      .|.+...+.  ...+..|+.+.|.|.+.|.|.|.+.|++++..+.....   ......|.|.++...|+| .|.|.+.|.
T Consensus         2 ~P~i~~~~~--~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~   79 (92)
T d2ifga1           2 VPTLKVQVP--NASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAEND   79 (92)
T ss_dssp             CCEEEEECC--SSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCCCCSSEEEEEEESCCSTTTTCCEEECCEET
T ss_pred             CCEEEEeCC--CEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeeeeeccceeEEEccccccccceEEEEEEEcC
Confidence            577777776  44788999999999999999999999999877643221   224457999999999999 699999998


Q ss_pred             CCCceEEeEEE
Q psy7616          84 VGDPVTVDMTL   94 (147)
Q Consensus        84 ~~~~~~~~~~l   94 (147)
                      .|.. ...+.|
T Consensus        80 ~G~~-~~s~~l   89 (92)
T d2ifga1          80 VGRA-EVSVQV   89 (92)
T ss_dssp             TEEC-CEEECC
T ss_pred             CCEE-EEEEEE
Confidence            8775 444443

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=4.4e-14  Score=74.75  Aligned_cols=76  Identities=21%  Similarity=0.348  Sum_probs=59.5

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCC-CceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPV-PSIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~-~~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      +|.+...+.  .+.+..|+.+.|.|.+.+.+. +.+.|++++..+.....  ...+..|.|.++...|+|.|.|.+.+..
T Consensus         6 ~P~~~~~~~--~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~   83 (93)
T d1n26a1           6 CPAQEVARG--VLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRP   83 (93)
T ss_dssp             CCCCCCCTT--EEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESSEEEECSCCGGGCEEEEEESSSSC
T ss_pred             CCcEEeCCC--CEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCCEEEECCCChhcCEEEEEEECCcc
Confidence            455655444  678888999999999887665 57999999988865433  2346679999999999999999997754


Q ss_pred             C
Q psy7616          85 G   85 (147)
Q Consensus        85 ~   85 (147)
                      .
T Consensus        84 ~   84 (93)
T d1n26a1          84 A   84 (93)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=3.5e-14  Score=74.59  Aligned_cols=77  Identities=22%  Similarity=0.312  Sum_probs=60.2

Q ss_pred             EEeeCCeEEEEEeecCC-CCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEeee
Q psy7616          21 TVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK   99 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~   99 (147)
                      .+.+|++++|.|.+.+. +...+.|++++..+...   .....+.|.+++..|+|.|.|.+.+..+...+..+.+.|..+
T Consensus        11 ~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~---~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~~~   87 (89)
T d1f2qa2          11 VVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYW---YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKA   87 (89)
T ss_dssp             EEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSC---CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECS
T ss_pred             eEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccc---cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEEeC
Confidence            78899999999998665 44579999998766432   234568899999999999999999876654456677777765


Q ss_pred             e
Q psy7616         100 I  100 (147)
Q Consensus       100 ~  100 (147)
                      |
T Consensus        88 P   88 (89)
T d1f2qa2          88 P   88 (89)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=4.6e-14  Score=76.15  Aligned_cols=91  Identities=16%  Similarity=0.182  Sum_probs=67.9

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee----------eeccceEEEeecCCCCeE
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~g~   75 (147)
                      .+||.+......     ..+....+.|.+.|.|.|.+.|++++..+......          .....|.|.+++..|.|.
T Consensus         2 ~~pP~it~~~~~-----~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (103)
T d1wwbx_           2 HFAPTITFLESP-----TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGD   76 (103)
T ss_dssp             CCCCCCCCCCCC-----CCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             ccCCeeEEcCCC-----ccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCce
Confidence            467776433221     25667788999999999999999999887543221          123469999999999999


Q ss_pred             EEEEeecCCCCceEEeEEEEEeeeecC
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLCKILP  102 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~~~~~  102 (147)
                      |.|.+.|..|.. +..+.+.+...|.+
T Consensus        77 Y~C~a~N~~G~~-~~~~~v~V~~~P~i  102 (103)
T d1wwbx_          77 YTLIAKNEYGKD-EKQISAHFMGWPGI  102 (103)
T ss_dssp             EEEEEECSSCEE-EEEEEECCSCCCCC
T ss_pred             EEEEEeccCCEE-EEEEEEEEEeCCCC
Confidence            999999998885 77777777666653

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.49  E-value=8.2e-14  Score=73.15  Aligned_cols=74  Identities=11%  Similarity=0.247  Sum_probs=56.7

Q ss_pred             EEeeCCeEEEEEeecC-CCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          21 TVRKGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      .+.+|+++.|.|.+.+ .|.+.+.|++++..+..   ......+.|.+++..|+|.|.|.+.+..+...+..+.+.|.
T Consensus        13 ~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~---~~~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV~   87 (89)
T d1fnla2          13 VFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY---FHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITIT   87 (89)
T ss_dssp             EEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE---EEECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             eEccCCeEEEEEEecCCCCCcEEEEEEcccccce---eccccccEECccceeccceEEEEEEeCCCCeEEeeEEEEEE
Confidence            7889999999999864 45567999999865421   22455788999999999999999998766544455666654

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.1e-13  Score=72.84  Aligned_cols=86  Identities=21%  Similarity=0.327  Sum_probs=63.9

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCC---CCceEEEecCCCCCC---Cce-----------eeeccceEEEeecCC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNP---VPSIIWSKKDSSLPS---GEK-----------SLEGFSITLEKVDRH   71 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~---~~~v~w~~~~~~~~~---~~~-----------~~~~~~l~~~~~~~~   71 (147)
                      |.|...|.  .+.+..|+++.|.|.+.+.|   .|.+.|++++.....   ...           ......|.|.+++..
T Consensus         5 ~~Fv~~P~--~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   82 (110)
T d2avga1           5 GLFVMRPQ--DGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPA   82 (110)
T ss_dssp             CSEEECCC--CEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTT
T ss_pred             CEeEECCC--eEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHH
Confidence            45555555  67899999999999998877   567999997643211   110           012346999999999


Q ss_pred             CCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          72 QAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        72 ~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      |+|.|.|.+.|..|.. +..+.|.|.
T Consensus        83 D~G~Y~C~a~N~~G~~-~~~~~L~V~  107 (110)
T d2avga1          83 FTGGYRCEVSTKDKFD-CSNFNLTVH  107 (110)
T ss_dssp             CCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             HCcEEEEEEEECCCeE-EEEEEEEEE
Confidence            9999999999988875 677777664

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=5.3e-14  Score=76.21  Aligned_cols=91  Identities=18%  Similarity=0.264  Sum_probs=66.3

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee---------eeccceEEEeecCCCCeE
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---------LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~g~   75 (147)
                      |++||.+......     ..+....+.|.+.|.|.|.+.|++++..+......         .....|.|.+++..|+|.
T Consensus         2 V~~PP~i~~~~~~-----~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~   76 (105)
T d1wwca_           2 VYYPPRVVSLEEP-----ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGN   76 (105)
T ss_dssp             CCCCCCCCCCCCC-----CCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEE
T ss_pred             EEcCCeeEEeCCC-----EEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceE
Confidence            5678887544332     23445567888899999999999999877543211         123468999999999999


Q ss_pred             EEEEeecCCCCceEEeEEEEEeeeec
Q psy7616          76 YQCTATNGVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        76 y~C~~~~~~~~~~~~~~~l~v~~~~~  101 (147)
                      |+|.+.|..|.. +..+.+.+..+|.
T Consensus        77 Y~C~a~N~~G~~-~~~~~v~V~~~P~  101 (105)
T d1wwca_          77 YTLIAKNPLGTA-NQTINGHFLKEPF  101 (105)
T ss_dssp             EEEEEEETTEEE-EEEEEECCSCCCC
T ss_pred             EEEEEEcCCCEE-EEEEEEEEEeCCC
Confidence            999999988775 6777777665554

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.48  E-value=2.5e-14  Score=75.00  Aligned_cols=76  Identities=20%  Similarity=0.344  Sum_probs=57.6

Q ss_pred             EEeeCCeEEEEEeecCC-CCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEeee
Q psy7616          21 TVRKGGTITLECKASGN-PVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCK   99 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~   99 (147)
                      .+.+|++++|.|.+.+. +.+.+.|++++..+..   ...+..|.|.+++..|+|.|.|.+.|..+...+..+.+.|..|
T Consensus        11 ~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~---~~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          11 EFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF---SRSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             EECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEE---ESSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEECCC
T ss_pred             eEecCCeEEEEEEecCCCCCcEEEEEeecccccc---cccccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEeCC
Confidence            68899999999998654 5568999999865421   1234578899999999999999999977654345666666543

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.48  E-value=3.1e-13  Score=72.08  Aligned_cols=78  Identities=18%  Similarity=0.414  Sum_probs=58.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCC-CceEEEecCCC-CCC-Cce--e----eeccceEEEeecCCCCeEEEEEeecCCCCceE
Q psy7616          19 QLTVRKGGTITLECKASGNPV-PSIIWSKKDSS-LPS-GEK--S----LEGFSITLEKVDRHQAGVYQCTATNGVGDPVT   89 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~-~~v~w~~~~~~-~~~-~~~--~----~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~   89 (147)
                      ...+..|+.+.|.|.+.+.|. +.+.|+++++. +.. ...  .    .....|.|.++...|+|.|.|.+.|..|...+
T Consensus         9 ~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   88 (97)
T d1epfa1           9 QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSE   88 (97)
T ss_dssp             SEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEE
T ss_pred             CEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEE
Confidence            558889999999999988874 68999995543 222 111  1    12346999999999999999999998876545


Q ss_pred             EeEEEEE
Q psy7616          90 VDMTLEV   96 (147)
Q Consensus        90 ~~~~l~v   96 (147)
                      +.+.|.|
T Consensus        89 ~tv~l~V   95 (97)
T d1epfa1          89 ATVNVKI   95 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            5666654

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.47  E-value=4e-13  Score=72.12  Aligned_cols=87  Identities=24%  Similarity=0.409  Sum_probs=63.6

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCC------C-ce-e---eeccceEEEeec-CCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPS------G-EK-S---LEGFSITLEKVD-RHQA   73 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~------~-~~-~---~~~~~l~~~~~~-~~~~   73 (147)
                      .||.+...+.  ...+..|+.+.|.|.+.+.|.+ .+.|++++.....      . .. .   .....|.|.++. ..|+
T Consensus         1 GPP~i~~~~~--~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~   78 (101)
T d3b5ha1           1 GPPRVKAVKS--SEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADP   78 (101)
T ss_dssp             CSCCCEESCS--EEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSS
T ss_pred             CCceEEEcCC--cEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCC
Confidence            4788877665  5588999999999999998877 6999997644321      0 01 1   123368888887 4789


Q ss_pred             eEEEEEeecCCCCceEEeEEEEE
Q psy7616          74 GVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        74 g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      |.|.|.+.|..|.. +..+.|.|
T Consensus        79 G~Y~C~A~N~~G~~-~~~~~L~V  100 (101)
T d3b5ha1          79 GQYRCNGTSSKGSD-QAIITLRV  100 (101)
T ss_dssp             EEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEEEEEECCCEE-EEEEEEEE
Confidence            99999999988775 55565554

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=6.1e-13  Score=72.84  Aligned_cols=82  Identities=26%  Similarity=0.300  Sum_probs=62.0

Q ss_pred             ceEEeeCCeEEEEEeecCCC---CCceEEEecCCCCCC---Cc--e---------eeeccceEEEeecCCCCeEEEEEee
Q psy7616          19 QLTVRKGGTITLECKASGNP---VPSIIWSKKDSSLPS---GE--K---------SLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~---~~~v~w~~~~~~~~~---~~--~---------~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      ...+..|+++.|.|.+.+.|   .|.+.|++++.....   ..  .         ......|.|.+++..|+|.|.|.+.
T Consensus         9 ~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   88 (113)
T d2dava1           9 GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVT   88 (113)
T ss_dssp             CCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEE
T ss_pred             eEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeEEEEEEE
Confidence            56899999999999998877   478999998644210   00  0         0123358999999999999999999


Q ss_pred             cCCCCceEEeEEEEEeeeec
Q psy7616          82 NGVGDPVTVDMTLEVLCKIL  101 (147)
Q Consensus        82 ~~~~~~~~~~~~l~v~~~~~  101 (147)
                      |..|.. +..+.|.|..++.
T Consensus        89 N~~G~~-~~~~~L~V~~~~~  107 (113)
T d2dava1          89 YKDKFD-SCSFDLEVHESTG  107 (113)
T ss_dssp             CSSCEE-EECCEEEEECCCC
T ss_pred             eCCCEE-EEEEEEEEEcCCC
Confidence            988875 7777888765543

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=5.1e-13  Score=72.82  Aligned_cols=77  Identities=22%  Similarity=0.477  Sum_probs=56.8

Q ss_pred             EEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCCce-------------eeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSGEK-------------SLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~~~-------------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      .+..|+.+.|.|.+. +.|.+.+.|++++..+.....             ......|.|.+++..|+|.|.|.+.|..|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            678999999999975 678999999998865522111             113446889999999999999999998876


Q ss_pred             ce-EEeEEEEEe
Q psy7616          87 PV-TVDMTLEVL   97 (147)
Q Consensus        87 ~~-~~~~~l~v~   97 (147)
                      .. +..+.+.|.
T Consensus        93 ~~~s~~v~l~V~  104 (110)
T d1f97a2          93 AMRSEAAHMDAV  104 (110)
T ss_dssp             CEECCCEEEEEE
T ss_pred             EEEEEEEEEEEE
Confidence            53 234455543

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.3e-13  Score=73.54  Aligned_cols=78  Identities=22%  Similarity=0.316  Sum_probs=57.8

Q ss_pred             ceEEeeCCeEEEEEeecCCC-CCceEEEecCCCCCC---Cce--ee-----eccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          19 QLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPS---GEK--SL-----EGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~~~~~~---~~~--~~-----~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      ...+..|+++.|.|.+.+.| .|.+.|++++..+..   ...  ..     ....|.|.++...|+|.|.|.+.|..|..
T Consensus        12 ~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   91 (104)
T d2aw2a1          12 EHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLI   91 (104)
T ss_dssp             EEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             eEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeE
Confidence            56889999999999999988 589999998876531   111  11     12248899999999999999999987754


Q ss_pred             eEEeEEEEE
Q psy7616          88 VTVDMTLEV   96 (147)
Q Consensus        88 ~~~~~~l~v   96 (147)
                      .+..+.+.|
T Consensus        92 ~s~~~~l~V  100 (104)
T d2aw2a1          92 ESHSTTLYV  100 (104)
T ss_dssp             ECCCEEEEE
T ss_pred             EEEEEEEEE
Confidence            333455544

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=3.8e-13  Score=72.72  Aligned_cols=78  Identities=18%  Similarity=0.405  Sum_probs=59.4

Q ss_pred             CCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-------------ceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616          17 NGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-------------EKSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        17 ~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-------------~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      +..+.+..|+++.|.|.+.+.|.|.+.|++++..+...             ........|.|.++...|+|.|.|.+.|.
T Consensus        11 ~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~   90 (105)
T d1nbqa1          11 EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTYTCMVSEE   90 (105)
T ss_dssp             CSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEEEEEEEET
T ss_pred             CCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeEEEEEEEC
Confidence            33678899999999999999999999999987654211             11223457899999999999999999998


Q ss_pred             CCCceEEeEEEE
Q psy7616          84 VGDPVTVDMTLE   95 (147)
Q Consensus        84 ~~~~~~~~~~l~   95 (147)
                      .|.. ...+.+.
T Consensus        91 ~G~~-~~~~~v~  101 (105)
T d1nbqa1          91 GGNS-YGEVKVK  101 (105)
T ss_dssp             TSSC-EECCEEE
T ss_pred             CCCE-EEEEEEE
Confidence            8775 4443333

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.5e-12  Score=68.67  Aligned_cols=68  Identities=21%  Similarity=0.454  Sum_probs=55.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc---eeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE---KSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      ...+..|+++.|.|.+.+ +.+.+.|++++..+....   .......|.|.++...|+|.|.|.+.+..+..
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~   76 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRKNLLIFNLSEGDSGVYQCLSEERVKNK   76 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTTCEEECSCCGGGCEEEEEEEEEECSSS
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceeeEEEECCCCHHHCcEEEEEEEEcCCCE
Confidence            347889999999999988 778999999998874322   12355679999999999999999999876654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2e-13  Score=73.76  Aligned_cols=79  Identities=28%  Similarity=0.537  Sum_probs=59.6

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCCce------------eeeccceEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGEK------------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~   73 (147)
                      +||.+.....+  ..+..|+.+.|.|.+ .+.|.+.+.|++++..+.....            ......|.|.+++..|+
T Consensus         1 VPP~~p~~~~~--~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~   78 (104)
T d1nbqa2           1 VPPSKPTVNIP--SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDT   78 (104)
T ss_dssp             BCCCCCCCCCB--SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGC
T ss_pred             CCCcccccCCC--CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccC
Confidence            36665544443  367899999999987 4678899999999887643211            11234688999999999


Q ss_pred             eEEEEEeecCCCCc
Q psy7616          74 GVYQCTATNGVGDP   87 (147)
Q Consensus        74 g~y~C~~~~~~~~~   87 (147)
                      |.|.|.+.|..|..
T Consensus        79 G~Y~C~a~N~~G~~   92 (104)
T d1nbqa2          79 GEYSCEARNGYGTP   92 (104)
T ss_dssp             CCEEEEEECSSSCC
T ss_pred             cEEEEEEEECCCce
Confidence            99999999988875

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.39  E-value=1.7e-12  Score=67.42  Aligned_cols=78  Identities=21%  Similarity=0.408  Sum_probs=58.4

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCC-ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVP-SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~-~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      |.+...|.  ...+..|+.++|.|.+.+.+.+ .+.|++++..+..     ....|.|..+...|+|.|.|.+.+...  
T Consensus         5 p~i~~~P~--~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~-----~~~~l~i~~v~~~dsG~Y~C~a~ns~~--   75 (85)
T d2fcba1           5 AVLKLEPQ--WINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPT-----HTQPSYRFKANNNDSGEYTCQTGQTSL--   75 (85)
T ss_dssp             CEEEEESC--CSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTT-----CCSSEEEEECCGGGCEEEEEECTTSBC--
T ss_pred             CEEEECCC--CeEEcCCCeEEEEEEEeeccceeEEEeecccccccc-----cccceEEeeccccCCcEEEEECCCCcc--
Confidence            34555555  4488999999999998887765 5889998877643     345788999999999999999987533  


Q ss_pred             eEEeEEEEE
Q psy7616          88 VTVDMTLEV   96 (147)
Q Consensus        88 ~~~~~~l~v   96 (147)
                       +..+.|.|
T Consensus        76 -S~~v~l~V   83 (85)
T d2fcba1          76 -SDPVHLTV   83 (85)
T ss_dssp             -CCCEEEEE
T ss_pred             -cccEEEEE
Confidence             34455554

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=2.7e-12  Score=68.92  Aligned_cols=76  Identities=22%  Similarity=0.445  Sum_probs=57.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCC-------------CceeeeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPS-------------GEKSLEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~-------------~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      .+.+..|+++.|.|.+.+.|.|.+.|++.+.....             .........|.|.+++..|+|.|.|.+.+..+
T Consensus        10 ~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~C~a~n~~g   89 (102)
T d1f97a1          10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYTCMVSEEGG   89 (102)
T ss_dssp             EEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEEEEEEETTS
T ss_pred             cEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEEEEEEECCC
Confidence            56889999999999999989999999986654211             01122345699999999999999999999887


Q ss_pred             CceEEeEEEE
Q psy7616          86 DPVTVDMTLE   95 (147)
Q Consensus        86 ~~~~~~~~l~   95 (147)
                      .. ...+.+.
T Consensus        90 ~~-~~~~~v~   98 (102)
T d1f97a1          90 QN-YGEVSIH   98 (102)
T ss_dssp             SS-EEEEEEE
T ss_pred             CE-EEEEEEE
Confidence            75 4443333

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.1e-12  Score=68.65  Aligned_cols=86  Identities=22%  Similarity=0.247  Sum_probs=59.1

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEe--cC-CCCCCCce--e---eeccceEEEeecCCCCeEEEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSK--KD-SSLPSGEK--S---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~--~~-~~~~~~~~--~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .|.|. .+.  +..+..|+++.|.|.+.|.|.|.+.|++  .+ ........  .   .....|.|.++...|+|.|+|.
T Consensus         2 ~P~f~-~~~--~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   78 (96)
T d2c9aa1           2 TPHFL-RIQ--NVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCM   78 (96)
T ss_dssp             SCEEC-CCC--CEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEE
T ss_pred             cCeec-ccC--CEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEE
Confidence            46675 343  6799999999999999998877655433  22 22221111  1   1234699999999999999999


Q ss_pred             eecCCCCceEEeEEEEE
Q psy7616          80 ATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        80 ~~~~~~~~~~~~~~l~v   96 (147)
                      +.|..|...+....|.|
T Consensus        79 a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          79 IRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCeEEEEEEEEEE
Confidence            99988875444455554

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=2.1e-12  Score=66.63  Aligned_cols=79  Identities=22%  Similarity=0.339  Sum_probs=56.9

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCc-eEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      +|.+...|...  .+.+|+.+.|.|.+.+.+.+. +.|++++..+..     ....|.|.+++..|+|.|.|.+.+... 
T Consensus         1 KP~It~~P~~~--~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~i~~v~~~d~G~Y~C~a~~s~~-   72 (82)
T d1f2qa1           1 KPKVSLNPPWN--RIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEE-----TNSSLNIVNAKFEDSGEYKCQHQQVNE-   72 (82)
T ss_dssp             CCCCEEESSCS--EEETTCCEEEECCTTCC----CCEEEETTEECSC-----CSSEEEECSCCGGGCEEEEEECTTSSC-
T ss_pred             CCEEEEcCCCe--EEeCCCeEEEEEEEeeeeeecceeeeeeeeeeec-----ccceeEECCCChhhCCcEEEEecCCCC-
Confidence            47777777643  789999999999998887764 667777765542     345689999999999999999977543 


Q ss_pred             ceEEeEEEEE
Q psy7616          87 PVTVDMTLEV   96 (147)
Q Consensus        87 ~~~~~~~l~v   96 (147)
                        +.++.|.|
T Consensus        73 --S~~v~l~V   80 (82)
T d1f2qa1          73 --SEPVYLEV   80 (82)
T ss_dssp             --CCCEEEEE
T ss_pred             --cccEEEEE
Confidence              34555554

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.35  E-value=6.8e-13  Score=71.72  Aligned_cols=69  Identities=19%  Similarity=0.309  Sum_probs=55.0

Q ss_pred             ceEEeeCCeEEEEEee-cCCCCCceEEEecCCCCCC---Cce--eeeccceEEEeecCCCCeEEEEEeecCCCCc
Q psy7616          19 QLTVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPS---GEK--SLEGFSITLEKVDRHQAGVYQCTATNGVGDP   87 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~---~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~   87 (147)
                      .+.+..|+.+.|.|.+ .+.|.+.+.|++++..+..   ...  ....+.|.|.+++..|+|.|.|.+.|..+..
T Consensus        13 ~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   87 (105)
T d1cs6a2          13 PVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFI   87 (105)
T ss_dssp             CEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             CEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCCEEeecccccccCcEEEEEEEECCCCE
Confidence            5689999999999986 5778889999999876532   111  2245579999999999999999999876654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.4e-12  Score=66.75  Aligned_cols=73  Identities=16%  Similarity=0.294  Sum_probs=54.6

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc-e--e-e--eccceEEEeecCCCCeEEEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE-K--S-L--EGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~-~--~-~--~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +|.|.....+ ...+..|+.+.|.|.+. .|.+.+.|++++..+.... .  . .  ....|.|.++...|+|.|.|.+.
T Consensus         5 ~~~f~~~l~~-~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_           5 STAFQKKLEP-AYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             TSSCSEECCS-EEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCcEEEeCCC-CEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            4555544432 45788999999999985 4888999999998874321 1  1 1  23469999999999999999986


Q ss_pred             c
Q psy7616          82 N   82 (147)
Q Consensus        82 ~   82 (147)
                      +
T Consensus        83 n   83 (94)
T d1pd6a_          83 G   83 (94)
T ss_dssp             T
T ss_pred             e
Confidence            6

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.32  E-value=3.8e-12  Score=65.91  Aligned_cols=71  Identities=17%  Similarity=0.357  Sum_probs=54.5

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCc-eEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPS-IIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~-v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .+|.+...|..  ..+..|+.++|.|.+.+.+.+. +.|++++..+.     .....|.|.+++..|+|.|.|.+.+..
T Consensus         4 Pkpvi~~~P~~--~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1           4 PKAVVFLEPQW--YSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS-----SQASSYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CCCEEEEESCC--SEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE-----SSCSEEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCCEEEECCCC--cEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee-----ecceeeEecCCcccCCEEEEEEccCCC
Confidence            35566677763  4899999999999998877765 66777765443     234578999999999999999987754

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=2.4e-12  Score=69.23  Aligned_cols=92  Identities=13%  Similarity=0.271  Sum_probs=64.5

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC--ceEEEecCCCCCCCce--eeeccceEEEeecCCCCeEEEEEe
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP--SIIWSKKDSSLPSGEK--SLEGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~--~v~w~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      +.|+.+.+.+.+.  .+..|+.++|.|.+.|. |.+  .+.|++++..+.....  ......|.|......|.|.|+|.+
T Consensus         2 ~~P~~v~i~p~~~--~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~~~~~~s~l~i~~~~~dd~g~ytC~A   79 (103)
T d1iama1           2 WTPERVELAPLPS--WQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGAQFSCRT   79 (103)
T ss_dssp             BCCSEEEECCCCS--EECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             CCCCceEEeCCCc--eEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccccccceEEEEEeeehhHCCCEEEEEE
Confidence            3577888887754  78899999999998864 544  4789999877643221  123456888888888999999999


Q ss_pred             ecCCCCceEEeEEEEEeeee
Q psy7616          81 TNGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        81 ~~~~~~~~~~~~~l~v~~~~  100 (147)
                      .|..+.. ...+.+.+..++
T Consensus        80 ~n~~g~~-~~~~~~~~s~p~   98 (103)
T d1iama1          80 ELDLRPQ-GLELFENTSAPY   98 (103)
T ss_dssp             EEECGGG-TSCEEEEECCCE
T ss_pred             EeCCCCc-cCeEeeeEcCCC
Confidence            9976653 333334443333

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=1.7e-12  Score=70.37  Aligned_cols=80  Identities=16%  Similarity=0.270  Sum_probs=59.4

Q ss_pred             EEeeCCeEE---EEEeecCCCCCceEEEecCCCCCCCcee------------eeccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          21 TVRKGGTIT---LECKASGNPVPSIIWSKKDSSLPSGEKS------------LEGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        21 ~~~~g~~~~---l~C~~~~~~~~~v~w~~~~~~~~~~~~~------------~~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      .+..|....   +.|.+.|.|.|.+.|++++..+......            .....|.|.++...|+|.|.|.+.|..|
T Consensus         8 ~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G   87 (107)
T d1he7a_           8 QLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (107)
T ss_dssp             CCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             EECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC
Confidence            343444444   4557899999999999999887543211            1223589999999999999999999988


Q ss_pred             CceEEeEEEEEeeeec
Q psy7616          86 DPVTVDMTLEVLCKIL  101 (147)
Q Consensus        86 ~~~~~~~~l~v~~~~~  101 (147)
                      .. ...+.+.+..+|.
T Consensus        88 ~~-~~~i~v~v~~~P~  102 (107)
T d1he7a_          88 QA-SASIMAAFMDNPF  102 (107)
T ss_dssp             EE-EEEEEECCCSCTT
T ss_pred             EE-EEEEEEEEEcCCC
Confidence            75 7778887777764

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=1.7e-11  Score=64.23  Aligned_cols=63  Identities=22%  Similarity=0.375  Sum_probs=50.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce----ee---eccceEEEeecCCCCeEEEEEeec
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK----SL---EGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~----~~---~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      +..+..|+.+.|.|.+. .|.+.+.|++++..+.....    ..   ....|.|.++...|+|.|.|.+.+
T Consensus         9 ~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1           9 DTTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             CEEEETTEEEEEEEECS-SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CEEEeCCCcEEEEEEEC-CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec
Confidence            67899999999999984 58889999999877643221    11   233699999999999999999866

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=6.8e-12  Score=67.89  Aligned_cols=84  Identities=21%  Similarity=0.357  Sum_probs=60.8

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-----------------eeeccceEEEeecCC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-----------------SLEGFSITLEKVDRH   71 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-----------------~~~~~~l~~~~~~~~   71 (147)
                      |.+.. +....+.+..|+.+.|.|.+.+.|.+.+.|.+++..+.....                 ......|.|.+++..
T Consensus         2 P~i~~-p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           2 PVIVS-PANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CEEEE-CCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCEEE-ECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            44433 333245567799999999999999999999998876532211                 011236899999999


Q ss_pred             CCe-EEEEEeecCCCCceEEeEEE
Q psy7616          72 QAG-VYQCTATNGVGDPVTVDMTL   94 (147)
Q Consensus        72 ~~g-~y~C~~~~~~~~~~~~~~~l   94 (147)
                      |.| .|.|.+.|..|.. ++.+.|
T Consensus        81 D~g~~Y~C~A~N~~G~~-~~~i~L  103 (107)
T d1iray3          81 FYKHPFTCFAKNTHGID-AAYIQL  103 (107)
T ss_dssp             GGSSCEEEEEECSSCEE-EEEEEE
T ss_pred             HCCcEEEEEEEeCCCeE-EEEEEE
Confidence            999 4999999998875 555544

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=7e-12  Score=67.12  Aligned_cols=79  Identities=15%  Similarity=0.204  Sum_probs=61.3

Q ss_pred             ceEEeeCCeEEEEEeec-CCCCCceEEEecCCCCCCC-----ceeeeccceEEEeecCCCCeEEEEEeecCCCCceEEeE
Q psy7616          19 QLTVRKGGTITLECKAS-GNPVPSIIWSKKDSSLPSG-----EKSLEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDM   92 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~-~~~~~~v~w~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~   92 (147)
                      .+....|+.+.|.|.+. +.+.+.+.|++++..+...     ........|.|.+++..|+|.|.|.+.|..+.. +..+
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~   89 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCL-RIKI   89 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETTEEEETTCCGGGCEEEEEEEEETTEEE-EEEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCCEEEeccceecCCEEEEEEEECCCCeE-EEEE
Confidence            56778899999999874 5688899999988654311     123456789999999999999999999987764 6667


Q ss_pred             EEEEee
Q psy7616          93 TLEVLC   98 (147)
Q Consensus        93 ~l~v~~   98 (147)
                      .|.|..
T Consensus        90 ~L~V~~   95 (101)
T d1iray1          90 SAKFVE   95 (101)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            777653

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.3e-11  Score=63.47  Aligned_cols=66  Identities=23%  Similarity=0.301  Sum_probs=53.4

Q ss_pred             EEeeCCeEEEEE------eecCCCCCceEEEecCCCCCCCc--eeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          21 TVRKGGTITLEC------KASGNPVPSIIWSKKDSSLPSGE--KSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        21 ~~~~g~~~~l~C------~~~~~~~~~v~w~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      .+..|....|.|      ...+.|.|.+.|++++..+....  .......|.|.++...|+|.|.|.+.+..+.
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~g   83 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYLG   83 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETTEEEESSCCGGGCEEEEEEEEEEETT
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCCEEEEcccccccCcEEEEEEEECcCC
Confidence            577899999999      35677889999999998875432  2345668999999999999999999876544

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.15  E-value=5.6e-12  Score=66.00  Aligned_cols=65  Identities=18%  Similarity=0.188  Sum_probs=52.5

Q ss_pred             CceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee---e--eccceEEEeecCCCCeEEEEEeecC
Q psy7616          18 GQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS---L--EGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        18 ~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~---~--~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .++.+..|+++.|.|.. +.|.+.+.|++++..+..+...   .  ....|.|.++...|+|.|.|.+.+.
T Consensus         9 ~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~   78 (89)
T d1tiua_           9 YGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANA   78 (89)
T ss_dssp             CCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSC
T ss_pred             cCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECce
Confidence            36789999999999997 4588899999999888544321   1  2346999999999999999998764

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.13  E-value=3.2e-11  Score=63.31  Aligned_cols=39  Identities=23%  Similarity=0.329  Sum_probs=34.3

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+..|.+.+++.+|+|.|+|.|.|..|.. +..++|.|.
T Consensus        52 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   90 (91)
T d1cs6a3          52 SSEPLLHIQNVDFEDEGTYECEAENIKGRD-TYQGRIIIH   90 (91)
T ss_dssp             BSSSEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             eeeeEEEeCCCCccCCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            456689999999999999999999999987 778888873

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=1.1e-10  Score=63.05  Aligned_cols=38  Identities=16%  Similarity=0.185  Sum_probs=32.2

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+|.|.+++.+|+|.|+|.+.+..+...+..++|.||
T Consensus        70 ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~Vy  107 (107)
T d1l6za1          70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVH  107 (107)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECCC
T ss_pred             cccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEEC
Confidence            45799999999999999999988865454778899886

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.12  E-value=2.9e-11  Score=64.24  Aligned_cols=37  Identities=27%  Similarity=0.478  Sum_probs=33.8

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +.++.|+|+
T Consensus        61 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~Vl   97 (97)
T d3dara1          61 HWSLIMESVVPSDKGNYTCVVENEYGSI-NHTYHLDVV   97 (97)
T ss_dssp             GTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             cEEEEECCCCcccCEEEEEEEEECCCEE-EEEEEEEEC
Confidence            4578999999999999999999999987 889999986

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.11  E-value=5.6e-11  Score=63.08  Aligned_cols=39  Identities=31%  Similarity=0.611  Sum_probs=34.1

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|...+..+.|+|+
T Consensus        59 ~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~L~Vl   97 (97)
T d1biha3          59 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV   97 (97)
T ss_dssp             TTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEE
T ss_pred             CCCEEEEEeccccccEEEEEEEEECCCcEEEEEEEEEEC
Confidence            445789999999999999999999999875678999885

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.11  E-value=5.1e-11  Score=63.57  Aligned_cols=38  Identities=26%  Similarity=0.580  Sum_probs=33.8

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ....|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        61 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   98 (100)
T d1qz1a3          61 DSSELTIRNVDKNDEAEYVCIAENKAGEQ-DASIHLKVF   98 (100)
T ss_dssp             TSCEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             CceEEEeCCCCcccCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            34678899999999999999999999988 888999885

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.10  E-value=8.5e-11  Score=61.36  Aligned_cols=37  Identities=27%  Similarity=0.476  Sum_probs=32.5

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        52 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V   88 (89)
T d1biha4          52 TDSGLVIKGVKNGDKGYYGCRATNEHGDK-YFETLVQV   88 (89)
T ss_dssp             ETTEEEESSCCSTTCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             eeeeEEECCCChhhCEEEEEEEEECCCEE-EEEEEEEE
Confidence            34568899999999999999999999987 77888877

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.09  E-value=1.3e-10  Score=63.14  Aligned_cols=71  Identities=25%  Similarity=0.397  Sum_probs=53.6

Q ss_pred             EEeeCCeEEEEEee-cCCCCCceEEEecCCCCCCCc---------eeeeccceEEEeecCCCCe---EEEEEeecCCCCc
Q psy7616          21 TVRKGGTITLECKA-SGNPVPSIIWSKKDSSLPSGE---------KSLEGFSITLEKVDRHQAG---VYQCTATNGVGDP   87 (147)
Q Consensus        21 ~~~~g~~~~l~C~~-~~~~~~~v~w~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~g---~y~C~~~~~~~~~   87 (147)
                      ++.+|+.+.|.|.+ .|.|.|.+.|++++..+....         .......|.|.+++..|+|   .|.|.+.|..+..
T Consensus        13 t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~   92 (111)
T d1biha2          13 TPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE   92 (111)
T ss_dssp             CCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS
T ss_pred             cccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCc
Confidence            34579999999986 788999999999876653211         1224567999999887766   7999999988775


Q ss_pred             eEEeE
Q psy7616          88 VTVDM   92 (147)
Q Consensus        88 ~~~~~   92 (147)
                       ...+
T Consensus        93 -~~~~   96 (111)
T d1biha2          93 -EVVL   96 (111)
T ss_dssp             -CEEE
T ss_pred             -eEEE
Confidence             4443

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.3e-12  Score=70.02  Aligned_cols=90  Identities=26%  Similarity=0.371  Sum_probs=64.0

Q ss_pred             eEEeCCceEEcCCCCceEEeeCCeEEEEEeecCCC-CCceEEEecCCCCCCCce---e-e-------eccceEEEeecCC
Q psy7616           4 LQMVPPSIRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKDSSLPSGEK---S-L-------EGFSITLEKVDRH   71 (147)
Q Consensus         4 ~~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~~~~~~~~~---~-~-------~~~~l~~~~~~~~   71 (147)
                      .|..||.+.. +.  ...+..|+.+.|.|.+.+.+ .+.+.|++++..+.....   . .       ....|.|.++...
T Consensus         3 ~V~~Pp~i~~-~~--~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~   79 (115)
T d2crya1           3 TVNGPPIISS-TQ--TQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRA   79 (115)
T ss_dssp             CCCSSCCEEE-EC--CCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHH
T ss_pred             EEecCCEEec-CC--CEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchh
Confidence            4567887754 33  33577899999999998854 557999999877643221   0 0       1135888899988


Q ss_pred             C-CeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          72 Q-AGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        72 ~-~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      | +|.|.|.+.|..|.. +..+.|.|.
T Consensus        80 D~~G~Y~C~A~N~~G~~-~~~~~L~V~  105 (115)
T d2crya1          80 DFQTIYNCTAWNSFGSD-TEIIRLKEQ  105 (115)
T ss_dssp             HHHSCEEEEEECSSCEE-EEEECCCCS
T ss_pred             cCCeEEEEEEEECCCeE-EEEEEEEEE
Confidence            8 699999999998875 666666554

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=1.7e-11  Score=63.38  Aligned_cols=39  Identities=15%  Similarity=0.409  Sum_probs=33.8

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+..+.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        42 ~~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~-~~~~~v~V~   80 (84)
T d2nxyb2          42 QGGKTLSVSQLELQDSGTWTCTVLQNQKKV-EFKIDIVVL   80 (84)
T ss_dssp             EESSEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEECEE
T ss_pred             eeeeeeeeeecccccccEEEEEEEeCCCEE-EEEEEEEEE
Confidence            445678899999999999999999999987 778888774

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=3e-11  Score=63.25  Aligned_cols=37  Identities=22%  Similarity=0.286  Sum_probs=33.4

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +..++|+|+
T Consensus        53 ~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~v~V~   89 (90)
T d1vcaa2          53 TSTLTMNPVSFGNEHSYLCTATCESRKL-EKGIQVEIY   89 (90)
T ss_dssp             EEEEEESSCCGGGCSEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             CcEEEEecccccccceEEEEEEeCCCEE-EEEEEEEEE
Confidence            4568889999999999999999999987 889999885

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.03  E-value=1.3e-10  Score=60.67  Aligned_cols=37  Identities=30%  Similarity=0.470  Sum_probs=32.9

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        51 ~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   87 (89)
T d1cs6a4          51 SGGELRFSKLVLEDSGMYQCVAENKHGTV-YASAELTV   87 (89)
T ss_dssp             ETTEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             eeeeEEEEeecccCCEEEEEEEEeCCCEE-EEEEEEEE
Confidence            45678899999999999999999999987 77888887

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.00  E-value=1.8e-09  Score=59.66  Aligned_cols=87  Identities=15%  Similarity=0.197  Sum_probs=56.9

Q ss_pred             EcCCCCceEEeeCCeEEEEEeecCC---CCCceEEEecCCCCC----------------C--Cc-ee------eeccceE
Q psy7616          13 TSPSNGQLTVRKGGTITLECKASGN---PVPSIIWSKKDSSLP----------------S--GE-KS------LEGFSIT   64 (147)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~C~~~~~---~~~~v~w~~~~~~~~----------------~--~~-~~------~~~~~l~   64 (147)
                      +..+...+.+..|++++|.|.....   ....+.|++.+....                .  .. ..      ..+..|.
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~   84 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALR   84 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEE
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEE
Confidence            3333445788899999999986432   234589998653210                0  00 00      1134799


Q ss_pred             EEeecCCCCeEEEEEeecCCCCceEEeEEEEEeeee
Q psy7616          65 LEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVLCKI  100 (147)
Q Consensus        65 ~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~~~~  100 (147)
                      |.+++..|+|.|.|.+.+..+.. +..+.|.|..|.
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~~~-~~~v~L~V~~P~  119 (126)
T d1pkoa_          85 IQNVRFSDEGGYTCFFRDHSYQE-EAAVELKVEDPF  119 (126)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECTT
T ss_pred             EEEEchhHCeEEEEEEEECCCEE-EEEEEEEEeCCC
Confidence            99999999999999998865543 566777776543

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=2.1e-10  Score=59.77  Aligned_cols=38  Identities=29%  Similarity=0.297  Sum_probs=34.0

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+..|.+.+++.+|+|.|+|.|.|..|.. +..++|.|
T Consensus        51 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V   88 (89)
T d1gl4b_          51 DFNGILTIRNVQPSDAGTYVCTGSNMFAMD-QGTATLHV   88 (89)
T ss_dssp             EETTEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             eeceEEEEecCCcccCEEEEEEEEECCCEE-EEEEEEEE
Confidence            446689999999999999999999999987 78888887

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.99  E-value=1.2e-10  Score=60.97  Aligned_cols=37  Identities=19%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ...|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        54 ~~~L~i~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   90 (91)
T d1tnna_          54 KSTFEISSVQASDEGNYSVVVENSEGKQ-EAEFTLTIQ   90 (91)
T ss_dssp             EEEEECSSCCSCCCEEEEEECBCSSCBC-CEEEEEECC
T ss_pred             eeEEeecCCCHHHCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            3467889999999999999999999988 888998874

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=1.4e-10  Score=62.49  Aligned_cols=66  Identities=14%  Similarity=0.190  Sum_probs=45.7

Q ss_pred             EEeeCCeEEEEEeecCC-C--CCceEEEecCCCCCCCce-------eeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKASGN-P--VPSIIWSKKDSSLPSGEK-------SLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~-~--~~~v~w~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      .+..|+.++|.|.+.|. +  .+.+.|++++..+.....       ......|.+......|.|.|+|++.|..+.
T Consensus        13 ~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~   88 (106)
T d1zxqa1          13 LVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMS   88 (106)
T ss_dssp             EECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGG
T ss_pred             EEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCC
Confidence            78899999999999763 3  346899999877632111       112234556666666777999999987543

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.95  E-value=1.5e-10  Score=60.85  Aligned_cols=36  Identities=22%  Similarity=0.320  Sum_probs=31.8

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|.
T Consensus        58 ~~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~~l~V~   93 (93)
T d1wiua_          58 TSIFFPSAKRADSGNYKLKVKNELGED-EAIFEVIVQ   93 (93)
T ss_dssp             EEEECTTBCGGGCEEEEEEEEETTEEE-EEEEEEEEC
T ss_pred             eeeccccccccccEEEEEEEEECCCEE-EEEEEEEEC
Confidence            357779999999999999999999988 888888873

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.3e-10  Score=61.11  Aligned_cols=36  Identities=19%  Similarity=0.373  Sum_probs=31.8

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        56 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~   91 (101)
T d2cqva1          56 SKLTILAARQEHCGCYTLLVENKLGSR-QAQVNLTVV   91 (101)
T ss_dssp             EEEEETTCCTTTCEEEEEEEECSSCEE-ECCEEEEEE
T ss_pred             eEEEEeeCCcccCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            468889999999999999999999988 778888773

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=8.2e-10  Score=57.61  Aligned_cols=39  Identities=18%  Similarity=0.169  Sum_probs=34.4

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+..|.|.+++.+|+|.|+|.|.|..|.. +.+++|.||
T Consensus        52 ~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~-~~s~~l~Vy   90 (90)
T d1gsma1          52 TGRSVLTVRNASLSAAGTRVCVGSCGGRTF-QHTVQLLVY   90 (90)
T ss_dssp             SSEEEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             CceeeEEcCccChhhCCcEEEEEEeCCCcE-EEEEEEEEC
Confidence            334679999999999999999999999976 889999986

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=8.4e-10  Score=57.91  Aligned_cols=74  Identities=18%  Similarity=0.248  Sum_probs=52.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC-------------c-ee-eeccceEEEeecCCCCeEEEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG-------------E-KS-LEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~-------------~-~~-~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+....|++++|.|... .|.+.+.|++++..+...             . .. ..+..|.|.+++..|+|.|.|.+.+.
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~   82 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNI   82 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTC
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECC
Confidence            45778999999999764 478889999987553110             0 01 12457999999999999999999776


Q ss_pred             CCCceEEeEEEEE
Q psy7616          84 VGDPVTVDMTLEV   96 (147)
Q Consensus        84 ~~~~~~~~~~l~v   96 (147)
                      .+   +..+.+.|
T Consensus        83 ~~---t~~~~l~V   92 (93)
T d1ccza1          83 TD---TMKFFLYV   92 (93)
T ss_dssp             CS---CEEEEEEE
T ss_pred             Cc---EEEEEEEE
Confidence            44   33455544

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=98.92  E-value=5.9e-10  Score=59.54  Aligned_cols=34  Identities=32%  Similarity=0.534  Sum_probs=30.8

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|
T Consensus        66 ~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L~V   99 (102)
T d1fhga_          66 SLTISEVCGDDDAKYTCKAVNSLGEA-TCTAELLV   99 (102)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             eeEecCCCHHhCEEEEEEEEECCcEE-EEEEEEEE
Confidence            57889999999999999999999988 77888877

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=7.4e-11  Score=60.84  Aligned_cols=49  Identities=24%  Similarity=0.175  Sum_probs=36.0

Q ss_pred             eeecCCCCcc--ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616          98 CKILPSGEKS--LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus        98 ~~~~~~~~~~--~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.|.++  .......+.+++.+|+|.|+|.|.|..|.. +..+.|.|+
T Consensus        32 P~P~v~W~k~g~~~~~~~~~~~v~~~d~G~Y~C~A~N~~G~~-~~~~~l~V~   82 (84)
T d2oz4a3          32 PLPELKCLKDGTFPLPIGESVTVTRDLEGTYLCRARSTQGEV-TREVTVNVL   82 (84)
T ss_dssp             SCCEEEEEETTTEECCTTSCEECCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             CccEEEEEEeeccceeeeeeeccccCCCCEEEEEEEcCCCEE-EEEEEEEEE
Confidence            4455556544  112233457899999999999999999987 888999884

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.92  E-value=4.3e-10  Score=58.82  Aligned_cols=35  Identities=29%  Similarity=0.514  Sum_probs=31.1

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        55 ~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~l~V   89 (91)
T d1rhfa1          55 FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV   89 (91)
T ss_dssp             EEEESSCCGGGCEEEEEEESSCTTCEECCCEEEEE
T ss_pred             eEEECCCCcccCEEEEEEEEECCCCEEEEEEEEEE
Confidence            57889999999999999999999986677888877

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=3.7e-09  Score=58.15  Aligned_cols=37  Identities=27%  Similarity=0.459  Sum_probs=31.8

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+|+|.+++.+|+|.|+|.+.+..|.. +..+.|.|+
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~  123 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVVL  123 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCeE-EeEEEEEEE
Confidence            3568999999999999999999998766 778888874

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=6.6e-09  Score=54.70  Aligned_cols=40  Identities=23%  Similarity=0.477  Sum_probs=34.9

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+..|.+.+++.+|+|.|+|.|.|..|...+..+.|+|+
T Consensus        53 ~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~~L~V~   92 (96)
T d1l6za2          53 QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDII   92 (96)
T ss_dssp             TTTTEEEECSCCGGGCEEEEEEEESSSCCEECCCCEEEEC
T ss_pred             CCceEEEEeccchhhceEEEEEEEeCCCCeEEEeEEEEEE
Confidence            3456789999999999999999999999887778999885

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=98.87  E-value=1.2e-09  Score=57.92  Aligned_cols=34  Identities=18%  Similarity=0.223  Sum_probs=30.7

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        62 ~L~I~~~~~~D~G~Y~c~a~N~~G~~-~~~~~L~V   95 (98)
T d1g1ca_          62 ELVIRDVTGEDSASIMVKAINIAGET-SSHAFLLV   95 (98)
T ss_dssp             EEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEeccCccccCEEEEEEEEECCcEE-EEEEEEEE
Confidence            57889999999999999999999988 77888877

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=3.6e-10  Score=60.53  Aligned_cols=35  Identities=17%  Similarity=0.322  Sum_probs=31.5

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .|.+.+++.+|+|.|+|.|.|.+|.. +..++|.|+
T Consensus        63 ~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~V~   97 (103)
T d1wwbx_          63 CLQLDNPTHMNNGDYTLIAKNEYGKD-EKQISAHFM   97 (103)
T ss_dssp             EEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECCS
T ss_pred             EEEECCCCHHhCceEEEEEeccCCEE-EEEEEEEEE
Confidence            58889999999999999999999988 888888774

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=3.8e-09  Score=55.63  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=31.6

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.|.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        60 ~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          60 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEE
Confidence            458889999999999999999999987566678887

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.9e-09  Score=55.56  Aligned_cols=36  Identities=19%  Similarity=0.231  Sum_probs=30.8

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ....|.....+|+|.|+|.|.|..|...+..++|.|
T Consensus        49 ~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          49 SPSVLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             SSEEEEECCCSSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cceEEecCCccccEEEEEEEEcCCCcEEEEEEEEEE
Confidence            456777888899999999999999977677888887

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.6e-10  Score=60.31  Aligned_cols=35  Identities=20%  Similarity=0.290  Sum_probs=31.2

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +.++.|.|+
T Consensus        63 ~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~v~V~   97 (105)
T d1wwca_          63 CLLFNKPTHYNNGNYTLIAKNPLGTA-NQTINGHFL   97 (105)
T ss_dssp             EEEEESCCGGGCEEEEEEEEETTEEE-EEEEEECCS
T ss_pred             EEEEeecccccceEEEEEEEcCCCEE-EEEEEEEEE
Confidence            47889999999999999999999988 888888774

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.82  E-value=1.6e-09  Score=57.80  Aligned_cols=39  Identities=31%  Similarity=0.503  Sum_probs=31.9

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V~  147 (147)
                      .+.+|.|.+++.+|+|.|+|.|.|..|.. .+..++|.|+
T Consensus        63 ~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v~Vl  102 (102)
T d1f97a1          63 SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVL  102 (102)
T ss_dssp             ETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEE
T ss_pred             cCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEEEEC
Confidence            34579999999999999999999999987 3445666664

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=9.9e-10  Score=57.53  Aligned_cols=38  Identities=13%  Similarity=0.262  Sum_probs=29.9

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..++.|.+.+++.+|+|.|+|.|.|..|.. .....|.|
T Consensus        53 ~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~-~~~~~i~V   90 (92)
T d1epfa2          53 LSNNYLQIRGIKKTDEGTYRCEGRILARGE-INFKDIQV   90 (92)
T ss_dssp             CTTSCEEETTCCGGGCEEEEEEEEEGGGTE-EEEEEEEE
T ss_pred             eeeeeEEECCCCHHhCEEEEEEEEECcCCE-EEEEEEEE
Confidence            345679999999999999999999987755 44555554

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=7.8e-10  Score=59.28  Aligned_cols=37  Identities=30%  Similarity=0.507  Sum_probs=29.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      +..|.|.+++.+|+|.|+|.|.|..|.. .+..++|.|
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v~V  104 (105)
T d1nbqa1          67 PTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIV  104 (105)
T ss_dssp             TTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCE
T ss_pred             CceEEEecccccceeeEEEEEEECCCCEEEEEEEEEEE
Confidence            4578899999999999999999999988 233444444

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.1e-09  Score=58.72  Aligned_cols=35  Identities=26%  Similarity=0.289  Sum_probs=30.5

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|...+..+.|.|
T Consensus        66 ~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~~~~l~V  100 (104)
T d2aw2a1          66 ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYV  100 (104)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEccccHHHCCeEEEEEEcCCCeEEEEEEEEEE
Confidence            47788999999999999999999976566788877

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.80  E-value=4.6e-10  Score=59.42  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=30.2

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        58 ~L~I~~~~~~D~G~Y~C~a~N~~G~~-~~~~~l~V   91 (97)
T d1koaa1          58 GLTINRVKGDDKGEYTVRAKNSYGTK-EEIVFLNV   91 (97)
T ss_dssp             EEEESCCCSGGGSCEEEEEEETTEEE-EEEECCEE
T ss_pred             EEEeCCCceecCEEEEEEEEECCCEE-EEEEEEEE
Confidence            57889999999999999999999987 77777776

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=1.1e-09  Score=57.38  Aligned_cols=36  Identities=28%  Similarity=0.427  Sum_probs=31.1

Q ss_pred             CCceEEeecCCCCCe-EEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAG-VYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G-~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ...|.+.+++.+|.| .|+|.|.|..|.. +..+.|.|
T Consensus        55 ~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~-~~s~~l~V   91 (92)
T d2ifga1          55 SLGLTLANVTSDLNRKNVTCWAENDVGRA-EVSVQVNV   91 (92)
T ss_dssp             EEEEEEESCCSTTTTCCEEECCEETTEEC-CEEECCCC
T ss_pred             ceeEEEccccccccceEEEEEEEcCCCEE-EEEEEEEE
Confidence            346888999999999 7999999999988 77887765

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=1.4e-08  Score=53.64  Aligned_cols=79  Identities=15%  Similarity=0.274  Sum_probs=54.6

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCCCCCC------------CceeeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDSSLPS------------GEKSLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .+....|+++.|.|.....  ....+.|++++..+..            ......+.+|.|.+++..|+|.|.|.+.+..
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ngSL~I~nl~~~DsG~Y~c~v~~~~   83 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTN   83 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTSCEEESSCCGGGCEEEEEEEEETT
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCccEEEeCCCHHHCEEEEEEEEeCC
Confidence            3466789999999964322  2346999997754311            1112345689999999999999999999877


Q ss_pred             CCc-eEEeEEEEEe
Q psy7616          85 GDP-VTVDMTLEVL   97 (147)
Q Consensus        85 ~~~-~~~~~~l~v~   97 (147)
                      +.. .+..+.|.|.
T Consensus        84 g~~~~~~~~~L~V~   97 (98)
T d1hnga1          84 GTRILNKALDLRIL   97 (98)
T ss_dssp             CCEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEEE
Confidence            764 2456666653

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.76  E-value=2.6e-09  Score=56.43  Aligned_cols=37  Identities=19%  Similarity=0.480  Sum_probs=32.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..|.+.+++.+|+|.|+|.|.|..|...+.++.|+||
T Consensus        60 ~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          60 STLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             eEEEcccCchhhceEEEEEEEeCCCcEEEEEEEEEEE
Confidence            4688899999999999999999999765678898885

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=9.4e-10  Score=59.26  Aligned_cols=35  Identities=17%  Similarity=0.330  Sum_probs=30.8

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .|.+.+++.+|+|.|+|.|.|.+|.. +.++.|.|+
T Consensus        64 ~L~i~~~~~~D~G~Y~C~A~N~~G~~-~~~i~v~v~   98 (107)
T d1he7a_          64 CLRLNQPTHVNNGNYTLLAANPFGQA-SASIMAAFM   98 (107)
T ss_dssp             EEEEESCCGGGCEEEEEEEEETTEEE-EEEEEECCC
T ss_pred             EEEECcccHHHCcEEEEEEEeCCCEE-EEEEEEEEE
Confidence            47889999999999999999999987 778887764

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.73  E-value=3.5e-08  Score=52.14  Aligned_cols=74  Identities=19%  Similarity=0.244  Sum_probs=52.3

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce------eeeccceEEEeecCCCCeEEEEEe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      .+|.+...|..   .+..|++++|.|.... +...+.|++++........      ......+.|.+++..|+|.|.|..
T Consensus         6 pkPsLsa~P~~---~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y   81 (99)
T d1ucta1           6 PMPFISAKSSP---VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQY   81 (99)
T ss_dssp             CCCCEEESSCS---EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCEEEecCCC---ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEE
Confidence            46788887753   6889999999998653 5667899987653221110      112335788999999999999998


Q ss_pred             ecCC
Q psy7616          81 TNGV   84 (147)
Q Consensus        81 ~~~~   84 (147)
                      .+..
T Consensus        82 ~~~~   85 (99)
T d1ucta1          82 RIGH   85 (99)
T ss_dssp             EETT
T ss_pred             ECCC
Confidence            7654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.72  E-value=1e-08  Score=53.20  Aligned_cols=38  Identities=13%  Similarity=0.315  Sum_probs=32.9

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+..+.|.+++.+|+|.|+|.|.|..|...+..+.|+|
T Consensus        49 ~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v~itV   86 (89)
T d1fnla2          49 HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI   86 (89)
T ss_dssp             ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             cccccEECccceeccceEEEEEEeCCCCeEEeeEEEEE
Confidence            35678899999999999999999999876677888887

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=3.1e-09  Score=56.57  Aligned_cols=39  Identities=10%  Similarity=0.163  Sum_probs=34.5

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+..|.|.+++.+|+|.|+|.|.|..|.. ...+.|.|+
T Consensus        56 ~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~L~V~   94 (101)
T d1iray1          56 QHKEKLWFVPAKVEDSGHYYCVVRNSSYCL-RIKISAKFV   94 (101)
T ss_dssp             EETTEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             ccCCEEEeccceecCCEEEEEEEECCCCeE-EEEEEEEEE
Confidence            346789999999999999999999999988 778888884

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.72  E-value=2.9e-09  Score=55.88  Aligned_cols=38  Identities=18%  Similarity=0.286  Sum_probs=31.9

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE  145 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~  145 (147)
                      .....|.+.+++.+|+|.|+|.|.|..|...+..+.|.
T Consensus        55 ~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~v~l~   92 (94)
T d1biha1          55 KDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFR   92 (94)
T ss_dssp             TTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEE
T ss_pred             ccceEEEEeccChhcCeEEEEEEEeCCCEEEEEEEEEE
Confidence            34567999999999999999999999997656666665

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=6.4e-09  Score=56.14  Aligned_cols=34  Identities=15%  Similarity=0.287  Sum_probs=31.5

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.|.+++..|+|.|+|.|.|..|.. +..+.|.|
T Consensus        73 ~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V  106 (110)
T d2avga1          73 ELHITDAQPAFTGGYRCEVSTKDKFD-CSNFNLTV  106 (110)
T ss_dssp             EEEEESCCTTCCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEeccCHHHCcEEEEEEEECCCeE-EEEEEEEE
Confidence            58889999999999999999999988 88888887

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.71  E-value=1.8e-09  Score=57.09  Aligned_cols=36  Identities=36%  Similarity=0.541  Sum_probs=29.3

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLE  145 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~  145 (147)
                      +..+.+..++.+|+|.|+|.|.|..|...+..++|+
T Consensus        61 ~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          61 GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             TEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             eeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            445666778999999999999999998766677764

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=3.9e-08  Score=51.25  Aligned_cols=36  Identities=22%  Similarity=0.379  Sum_probs=29.6

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEE
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTL  144 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l  144 (147)
                      ..++.|.|.+++.+|+|.|+|.|.|..|.. +....|
T Consensus        47 ~~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~-~~~~~l   82 (92)
T d1olza1          47 MGRKNLLIFNLSEGDSGVYQCLSEERVKNK-TVFQVV   82 (92)
T ss_dssp             TTTTCEEECSCCGGGCEEEEEEEEEECSSS-EEEEEE
T ss_pred             ceeeEEEECCCCHHHCcEEEEEEEEcCCCE-EEEEEE
Confidence            456789999999999999999999999866 444443

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=1.3e-07  Score=49.57  Aligned_cols=74  Identities=19%  Similarity=0.287  Sum_probs=53.4

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee-eccceEEEeecCCCCeEEEEEeecC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL-EGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+|.+...|.+   .+..|++++|.|.........+.|++++.......... ....+.+.+++..|+|.|.|.....
T Consensus         4 PkP~Lsa~P~~---~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           4 GKPFLSADRGL---VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQHQSGEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCCEEEESSCS---EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCSEEECSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCCEEEEeCCC---ccCCCCeEEEEEeCCCCCceEEEEEECCcccceEEcCCCcccEEEEeccccccCcEEEEEEEcC
Confidence            46778887754   78999999999986433445789999886543322211 2345778899999999999987653

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=9.3e-08  Score=49.80  Aligned_cols=72  Identities=18%  Similarity=0.316  Sum_probs=52.5

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce-eeeccceEEEeecCCCCeEEEEEee
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK-SLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +.+|.+...|.+   .+..|++++|.|.... ....+.|+|++........ ......+.|.+++..|+|.|.|...
T Consensus         2 ypkPsLsa~P~~---~V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           2 YDTPTLSVHPGP---EVISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             SCCCEEEEESCS---EEETTCEEEEEEECSS-SCSEEEEEEESSSCEEEEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCCCEEEEeCCC---cccCCCcEEEEECCCC-CCCEEEEEECCCccceeecCCCceeEEEecccChhcCceEEEEeE
Confidence            357888888864   7899999999998753 5567899998765422111 1133468889999999999999743

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.70  E-value=5.8e-09  Score=54.04  Aligned_cols=39  Identities=18%  Similarity=0.323  Sum_probs=33.5

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+..+.|.+++.+|+|.|+|.|.|..|...+..+.|.|.
T Consensus        47 ~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v~l~V~   85 (88)
T d2fcba2          47 SDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPVTITVQ   85 (88)
T ss_dssp             SCCEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             cccccccCccCHHHCCeEEEEEEeCCCCEEeeeEEEEEe
Confidence            456788999999999999999999998765778888874

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=7.4e-09  Score=56.14  Aligned_cols=34  Identities=26%  Similarity=0.373  Sum_probs=30.8

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus        69 ~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~L~V  102 (113)
T d2dava1          69 EMQIIKAKDNFAGNYRCEVTYKDKFD-SCSFDLEV  102 (113)
T ss_dssp             EEEECSCCTTSCEEEEEEEECSSCEE-EECCEEEE
T ss_pred             EEEEccCCHHHCeEEEEEEEeCCCEE-EEEEEEEE
Confidence            47889999999999999999999988 77888877

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.68  E-value=6.5e-08  Score=50.66  Aligned_cols=86  Identities=17%  Similarity=0.212  Sum_probs=56.7

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC----ceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+|.+...|..   .+..|++++|.|.... ....+.|++++......    ........+.|.+++..|+|.|.|...+
T Consensus         3 PKPsLsa~P~~---~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (95)
T d1olla1           3 PKPFIWAEPHF---MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRV   78 (95)
T ss_dssp             CCCEEEEESCS---EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeeCCC---cccCCCcEEEEEecCC-CccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCC
Confidence            36778777754   6889999999998753 56678899887432111    1111234688999999999999998765


Q ss_pred             CCC-CceEEeEEEEE
Q psy7616          83 GVG-DPVTVDMTLEV   96 (147)
Q Consensus        83 ~~~-~~~~~~~~l~v   96 (147)
                      ... ...+..+.|.|
T Consensus        79 ~~~~S~~Sd~leL~V   93 (95)
T d1olla1          79 GELWSEPSNLLDLVV   93 (95)
T ss_dssp             TTEECCCCCCEEEEE
T ss_pred             CCCccCCCCCEEEEE
Confidence            432 12244444443

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.67  E-value=1.1e-08  Score=55.07  Aligned_cols=38  Identities=21%  Similarity=0.451  Sum_probs=31.5

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEEC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVL  147 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V~  147 (147)
                      ...+.|.+++.+|+|.|+|.|.|..|.. .+..+.|+|+
T Consensus        66 ~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~l~V~  104 (110)
T d1f97a2          66 SGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAV  104 (110)
T ss_dssp             TCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEE
T ss_pred             ccceEECCCCccCCEEEEEEEEECCCcEEEEEEEEEEEE
Confidence            3468889999999999999999999977 3556777763

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=3.7e-07  Score=49.59  Aligned_cols=37  Identities=27%  Similarity=0.361  Sum_probs=26.7

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V~  147 (147)
                      .+|.|.+++.+|+|.|.|.+.+..+.. ....++|.|+
T Consensus        81 ~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          81 GSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            469999999999999999999865433 3455777763

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=1.2e-08  Score=52.86  Aligned_cols=40  Identities=20%  Similarity=0.337  Sum_probs=34.1

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+..+.+.+++.+|+|.|+|.|.|..|...+..+.|+|.
T Consensus        46 ~~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v~i~V~   85 (89)
T d1f2qa2          46 YENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITVI   85 (89)
T ss_dssp             CCSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeEEEEEE
Confidence            3456789999999999999999999988777788888873

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.9e-08  Score=53.29  Aligned_cols=34  Identities=26%  Similarity=0.581  Sum_probs=29.7

Q ss_pred             ceEEeecC-CCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVD-RHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~-~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++ ..|+|.|+|.|.|..|.. +..+.|.|
T Consensus        66 ~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~~~L~V  100 (101)
T d3b5ha1          66 ELHIENLNMEADPGQYRCNGTSSKGSD-QAIITLRV  100 (101)
T ss_dssp             EEEECSCCTTTSSEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEeccccccCCEEEEEEEEECCCEE-EEEEEEEE
Confidence            57778888 479999999999999988 88888887

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.2e-08  Score=54.30  Aligned_cols=29  Identities=17%  Similarity=0.216  Sum_probs=25.2

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      .+..|.+.+++.+|+|.|+|.|.|..|..
T Consensus        56 ~~~~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2          56 VKDRLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             ETTEEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             cCCEEEEcccccccCcEEEEEEEECcCCE
Confidence            45679999999999999999999988654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=3.3e-08  Score=52.17  Aligned_cols=40  Identities=20%  Similarity=0.418  Sum_probs=34.2

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V~  147 (147)
                      .+..+|++.+++.+|+|.|+|.+.+..|.. .+.++.|.|+
T Consensus        57 ~~ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          57 LANGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             CTTSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEE
T ss_pred             CCCccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEEE
Confidence            345789999999999999999999998876 4678888885

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=2.8e-07  Score=48.34  Aligned_cols=63  Identities=17%  Similarity=0.405  Sum_probs=44.8

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEecCCCCC-----------C----Cce-------eeeccceEEEeecCCCCeEEE
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKKDSSLP-----------S----GEK-------SLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~-----------~----~~~-------~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      +....|++++|+|.........+.|++......           .    ...       .....+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            456789999999998766667799998543210           0    000       011236999999999999999


Q ss_pred             EEeec
Q psy7616          78 CTATN   82 (147)
Q Consensus        78 C~~~~   82 (147)
                      |.+.+
T Consensus        84 C~v~~   88 (97)
T d2nxyb1          84 CEVED   88 (97)
T ss_dssp             EEETT
T ss_pred             EEEec
Confidence            99865

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.55  E-value=1.3e-06  Score=45.90  Aligned_cols=72  Identities=19%  Similarity=0.306  Sum_probs=51.5

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceee----eccceEEEeecCCCCeEEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSL----EGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+|.+...|..   .+..|++++|.|.... ....+.|+|++..........    ....+.|..+...|+|.|.|....
T Consensus         5 pkPsLsa~P~~---~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2           5 EKPSLSAQPGP---TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             CCCEEEEESCS---EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             CCCEEEEeCCC---cccCCCeEEEEECCCC-CccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeec
Confidence            57788888754   7899999999998654 566799999886543222111    123456788888899999997654

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=2.1e-08  Score=53.38  Aligned_cols=37  Identities=24%  Similarity=0.546  Sum_probs=30.4

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V  146 (147)
                      ...+.+.+++.+|+|.|+|.|.|..|.. .+..+.|+|
T Consensus        65 ~~~l~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~v~v~v  102 (104)
T d1nbqa2          65 TGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  102 (104)
T ss_dssp             TCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             ccceEECCCCcccCcEEEEEEEECCCceEEEEEEEEEE
Confidence            3567889999999999999999999987 355566665

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.48  E-value=1.6e-06  Score=46.23  Aligned_cols=64  Identities=27%  Similarity=0.475  Sum_probs=44.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC--------------CCCce---eeeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL--------------PSGEK---SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~--------------~~~~~---~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|++++|.|.........+.|++..  ...              .....   ......|.|.+++.+|++.|.|.
T Consensus        10 ~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa~YyCa   89 (107)
T d1kcvl1          10 SMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDADYYCG   89 (107)
T ss_dssp             EEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCceEEEE
Confidence            567889999999999776555679999842  111              00000   11233689999999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        90 ~~~   92 (107)
T d1kcvl1          90 QSY   92 (107)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            654

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.46  E-value=1.4e-06  Score=47.61  Aligned_cols=72  Identities=24%  Similarity=0.549  Sum_probs=49.4

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEec--CCCCCC------------C----------ce--ee----
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKK--DSSLPS------------G----------EK--SL----   58 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~~~------------~----------~~--~~----   58 (147)
                      |.+...|.  .+.+..|++++|.|...+.....+.|++-  +..+..            .          ..  ..    
T Consensus         2 ~~~~~~P~--~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~   79 (122)
T d1nezg_           2 PELRIFPK--KMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN   79 (122)
T ss_dssp             CEEEEESS--CEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT
T ss_pred             CceEEcCC--EEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCC
Confidence            55666665  56889999999999987766777999972  221100            0          00  00    


Q ss_pred             eccceEEEeecCCCCeEEEEEeec
Q psy7616          59 EGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        59 ~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      ....|.|.+++.+|+|.|.|.+..
T Consensus        80 ~~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          80 NKYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CEeEEEEcccccCCCEEEEeeEeC
Confidence            112589999999999999998754

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.45  E-value=3.8e-08  Score=52.58  Aligned_cols=29  Identities=21%  Similarity=0.291  Sum_probs=26.0

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      ..+.|.+.+++.+|+|.|+|.|.|..|..
T Consensus        59 ~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~   87 (105)
T d1cs6a2          59 TTGNLYIAKTEASDLGNYSCFATSHIDFI   87 (105)
T ss_dssp             TTCCEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             CCCEEeecccccccCcEEEEEEEECCCCE
Confidence            35579999999999999999999999876

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=3.2e-08  Score=53.00  Aligned_cols=33  Identities=15%  Similarity=0.268  Sum_probs=28.8

Q ss_pred             ceEEeecCCCCCe-EEEEEeecCCCCCcCeeeEEE
Q psy7616         112 SITLEKVDRHQAG-VYQCTATNGVGDPVTVDMTLE  145 (147)
Q Consensus       112 ~~~l~~~~~~d~G-~Y~C~a~n~~g~~~~~~~~l~  145 (147)
                      .|.+.+++.+|.| .|+|.|.|.+|.. +..+.|.
T Consensus        71 ~L~I~~v~~~D~g~~Y~C~A~N~~G~~-~~~i~L~  104 (107)
T d1iray3          71 VLNISEIESRFYKHPFTCFAKNTHGID-AAYIQLI  104 (107)
T ss_dssp             EEEESSCCGGGGSSCEEEEEECSSCEE-EEEEEEE
T ss_pred             EEEEeecchHHCCcEEEEEEEeCCCeE-EEEEEEE
Confidence            5888999999999 5999999999987 7777765

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=98.43  E-value=4.1e-07  Score=46.51  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=29.3

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ....+.|.+++.+|+|.|+|.|.|..+   +..+.|+|+
T Consensus        49 ~~~~l~i~~v~~~dsG~Y~C~a~ns~~---S~~v~l~V~   84 (85)
T d2fcba1          49 HTQPSYRFKANNNDSGEYTCQTGQTSL---SDPVHLTVL   84 (85)
T ss_dssp             CCSSEEEEECCGGGCEEEEEECTTSBC---CCCEEEEEE
T ss_pred             cccceEEeeccccCCcEEEEECCCCcc---cccEEEEEE
Confidence            456789999999999999999998755   446777774

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.43  E-value=1.7e-06  Score=46.07  Aligned_cols=65  Identities=29%  Similarity=0.567  Sum_probs=44.9

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CC--------------CCCce---eeeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SL--------------PSGEK---SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~--------------~~~~~---~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|++++|.|.........+.|++...  .+              +....   ......|.|.+++.+|+|.|.|.
T Consensus        10 ~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1j1pl_          10 TLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDFGMYFCQ   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCCEEEEEE
Confidence            5678899999999987655566799998432  11              00000   11234699999999999999997


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      ..+.
T Consensus        90 ~~~~   93 (107)
T d1j1pl_          90 QANS   93 (107)
T ss_dssp             ECSS
T ss_pred             cCCC
Confidence            6543

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.42  E-value=4e-06  Score=45.04  Aligned_cols=30  Identities=23%  Similarity=0.636  Sum_probs=24.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD   48 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~   48 (147)
                      .+.+..|+.+.|.|...+.....+.|++..
T Consensus         9 ~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~   38 (113)
T d2bnqd1           9 ALSVPEGENLVLNCSFTDSAIYNLQWFRQD   38 (113)
T ss_dssp             EEEEETTCCEEEEEEESCCCEEEEEEEEEC
T ss_pred             EEEEcCCCCEEEEEEEecCcccCCeEEEec
Confidence            568889999999999876555568899853

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.41  E-value=2.9e-06  Score=44.27  Aligned_cols=71  Identities=15%  Similarity=0.315  Sum_probs=50.8

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCce------eeeccceEEEeecCCCCeEEEEEee
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEK------SLEGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +|.+...|.+   .+..|++++|.|.... ....+.+++++........      ......+.|.+++..|.|.|.|...
T Consensus         2 KPsLsa~P~~---~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~   77 (96)
T d1nkra1           2 KPSLLAHPGP---LVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGS   77 (96)
T ss_dssp             CCEEEEESCS---EEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCEEEeeCCC---ccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEE
Confidence            5777777754   7899999999998753 5667888888754321111      1123358889999999999999875


Q ss_pred             c
Q psy7616          82 N   82 (147)
Q Consensus        82 ~   82 (147)
                      .
T Consensus        78 ~   78 (96)
T d1nkra1          78 V   78 (96)
T ss_dssp             B
T ss_pred             c
Confidence            4

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=1.4e-06  Score=46.40  Aligned_cols=64  Identities=19%  Similarity=0.413  Sum_probs=44.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC--------------CCce---eeeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP--------------SGEK---SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~--------------~~~~---~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|+.++|.|...+.....+.|++..  ..+.              ....   ......|.|.++..+|++.|.|.
T Consensus        10 ~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1ospl1          10 SFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVATYFCQ   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCCcEEEe
Confidence            568889999999998766555579999832  1110              0000   11234689999999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      +..
T Consensus        90 ~~~   92 (107)
T d1ospl1          90 QYW   92 (107)
T ss_dssp             ECS
T ss_pred             ecc
Confidence            654

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=1.6e-06  Score=46.21  Aligned_cols=65  Identities=15%  Similarity=0.363  Sum_probs=44.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC--------------CCcee---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP--------------SGEKS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~--------------~~~~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|.........+.|++..  ..+.              .....   .....|.|.+++.+|+|.|.|.
T Consensus        10 s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa   89 (107)
T d1c5cl1          10 SLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFADYYCL   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCeEEEEe
Confidence            457889999999998776555568999832  2110              00001   1233799999999999999997


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      +...
T Consensus        90 ~~~~   93 (107)
T d1c5cl1          90 QYAS   93 (107)
T ss_dssp             ECSS
T ss_pred             cCcC
Confidence            6543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.39  E-value=5.6e-06  Score=44.54  Aligned_cols=65  Identities=18%  Similarity=0.413  Sum_probs=45.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC--------CC-----c------eeeeccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP--------SG-----E------KSLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~--------~~-----~------~~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|+.++|.|.........+.|++...  ...        ..     .      .......|.|.++...|+|.|.
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~Dsg~Y~   88 (114)
T d2cdea1           9 SLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLSDSASYI   88 (114)
T ss_dssp             EEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGGGCSEEE
T ss_pred             EEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChhhCcccc
Confidence            5688899999999997765666799998431  110        00     0      0112336899999999999999


Q ss_pred             EEeecC
Q psy7616          78 CTATNG   83 (147)
Q Consensus        78 C~~~~~   83 (147)
                      |.+...
T Consensus        89 Ca~~~~   94 (114)
T d2cdea1          89 CVVSDR   94 (114)
T ss_dssp             EEEECS
T ss_pred             eeeecC
Confidence            988753

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.37  E-value=1.8e-06  Score=46.00  Aligned_cols=64  Identities=23%  Similarity=0.452  Sum_probs=44.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC--------------CCCcee---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL--------------PSGEKS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~--------------~~~~~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|++++|.|.........+.|++..  ..+              +.....   .....|.|.++..+|++.|.|.
T Consensus        10 ~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA~YyCa   89 (107)
T d1mexl1          10 FMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLAEYFCQ   89 (107)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecceeEEEe
Confidence            567889999999998765555679999742  211              000011   1234699999999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        90 ~~~   92 (107)
T d1mexl1          90 QYN   92 (107)
T ss_dssp             ECS
T ss_pred             ECC
Confidence            654

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=1.6e-07  Score=48.84  Aligned_cols=36  Identities=22%  Similarity=0.224  Sum_probs=29.8

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ....|++.+++.+|+|.|+|.|.|..+   +..+.|.|+
T Consensus        58 ~~~sL~I~~l~~~DsG~Y~c~~~n~~~---t~~~~l~V~   93 (93)
T d1ccza1          58 VSGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYVL   93 (93)
T ss_dssp             TTCCEEECSCCGGGCEEEEEECTTCCS---CEEEEEEEE
T ss_pred             CeeEEEEEecChhhCEEEEEEEECCCc---EEEEEEEEC
Confidence            356799999999999999999988755   456777774

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.37  E-value=2.8e-06  Score=44.47  Aligned_cols=73  Identities=21%  Similarity=0.361  Sum_probs=49.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCcee-------eeccceEEEeecCCCCeEEEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKS-------LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+|.+...|.+   .+..|++++|.|.... ....+.+++++.........       .....+.|.+++..|.|.|.|.
T Consensus         3 pkPsLsa~P~~---~v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~   78 (98)
T d1ugna2           3 IKPTLSAQPSP---VVNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCY   78 (98)
T ss_dssp             CCCEEEEESCS---EEETTCCEEEEEECSS-CCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEE
T ss_pred             CCCEEEeeCCC---ccCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEe
Confidence            46788888754   7899999999998653 55678888877543221110       1123588899999999999998


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      ....
T Consensus        79 y~~~   82 (98)
T d1ugna2          79 AYDS   82 (98)
T ss_dssp             EECT
T ss_pred             eEcC
Confidence            7654

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.37  E-value=2.2e-06  Score=45.69  Aligned_cols=64  Identities=22%  Similarity=0.479  Sum_probs=44.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CC--------------CCCceee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SL--------------PSGEKSL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~--------------~~~~~~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|+.++|.|.........+.|++...  .+              +......   ....|.|.+++.+|++.|.|.
T Consensus        10 sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsA~YyCa   89 (107)
T d1tjgl1          10 SLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPEDFATYYCQ   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCcCceEEEE
Confidence            5678899999999998765566789998432  11              0001111   233689999999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        90 ~~~   92 (107)
T d1tjgl1          90 QLH   92 (107)
T ss_dssp             ECS
T ss_pred             ECc
Confidence            654

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=2.3e-07  Score=47.15  Aligned_cols=37  Identities=19%  Similarity=0.293  Sum_probs=29.7

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      ..+..+.+.+++.+|+|.|+|.|.|..+   +..+.|+|+
T Consensus        45 ~~~~~l~i~~v~~~d~G~Y~C~a~~s~~---S~~v~l~V~   81 (82)
T d1f2qa1          45 ETNSSLNIVNAKFEDSGEYKCQHQQVNE---SEPVYLEVF   81 (82)
T ss_dssp             CCSSEEEECSCCGGGCEEEEEECTTSSC---CCCEEEEEE
T ss_pred             cccceeEECCCChhhCCcEEEEecCCCC---cccEEEEEE
Confidence            3456789999999999999999998755   456777773

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=2.3e-06  Score=45.53  Aligned_cols=64  Identities=22%  Similarity=0.395  Sum_probs=44.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEec--CCCCC-------------CCc-ee---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKK--DSSLP-------------SGE-KS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~~-------------~~~-~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.++|.|.........+.|++.  +....             ... ..   .....|.|.++..+|+|.|.|.
T Consensus        10 slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (106)
T d1i8ka_          10 SLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVGDYYCL   89 (106)
T ss_dssp             EEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccCEEEeEe
Confidence            45778999999999876555567999974  22210             000 01   1233699999999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        90 ~~~   92 (106)
T d1i8ka_          90 QSF   92 (106)
T ss_dssp             ECS
T ss_pred             cCc
Confidence            654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.32  E-value=6.1e-06  Score=43.96  Aligned_cols=65  Identities=25%  Similarity=0.464  Sum_probs=44.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCC----------------CCceee---eccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP----------------SGEKSL---EGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~----------------~~~~~~---~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|+.++|.|.........+.|++....-.                ......   ....|.|.++..+|++.|.|-
T Consensus        10 ~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA   89 (108)
T d1jhll_          10 YLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDFAMYICQ   89 (108)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCCSEEEEE
T ss_pred             eEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccceEEEEe
Confidence            5578889999999997665556799998432110                000011   223699999999999999997


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      ....
T Consensus        90 ~~~~   93 (108)
T d1jhll_          90 QHNE   93 (108)
T ss_dssp             ECSS
T ss_pred             eCCC
Confidence            6543

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.8e-07  Score=48.70  Aligned_cols=28  Identities=25%  Similarity=0.394  Sum_probs=24.2

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      ..+..|.|.+++.+|+|.|+|.|.|..+
T Consensus        57 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~~   84 (93)
T d1n26a1          57 GMGRRLLLRSVQLHDSGNYSCYRAGRPA   84 (93)
T ss_dssp             EESSEEEECSCCGGGCEEEEEESSSSCS
T ss_pred             cCCCEEEECCCChhcCEEEEEEECCccc
Confidence            4467899999999999999999987654

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.8e-06  Score=45.05  Aligned_cols=72  Identities=14%  Similarity=0.355  Sum_probs=50.9

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCc----eeeeccceEEEeecCCCCeEEEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGE----KSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+|.+...|..   .+..|++++|.|... .....+.+++++.......    .......+.|.+++..|+|.|.|....
T Consensus         3 PkP~Lsa~Ps~---~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~   78 (96)
T d1ugna1           3 PKPTLWAEPGS---VITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGS   78 (96)
T ss_dssp             CCCEEEEESCS---EEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEeECCC---ccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeC
Confidence            36777777753   688999999999864 3556788888775432111    112334688999999999999998643

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.31  E-value=2e-07  Score=51.21  Aligned_cols=35  Identities=17%  Similarity=0.321  Sum_probs=30.4

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .+|.|.+++.+|+|.|+|.+.+..+.. +..+.|.|
T Consensus        81 ~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~v~L~V  115 (126)
T d1pkoa_          81 VALRIQNVRFSDEGGYTCFFRDHSYQE-EAAVELKV  115 (126)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             EEEEEEEEchhHCeEEEEEEEECCCEE-EEEEEEEE
Confidence            478999999999999999999987766 77777876

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.30  E-value=5.4e-06  Score=44.03  Aligned_cols=64  Identities=23%  Similarity=0.430  Sum_probs=44.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CC--------------CCCcee---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SL--------------PSGEKS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~--------------~~~~~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|+.++|.|...+.....+.|++...  .+              +.....   .....|.|.+++.+|++.|.|.
T Consensus         9 sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1op3k1           9 TLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFATYHCQ   88 (106)
T ss_dssp             EEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCSEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCCcEeee
Confidence            5688899999999987665555689998431  11              000001   1223699999999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        89 ~~~   91 (106)
T d1op3k1          89 HYA   91 (106)
T ss_dssp             EEC
T ss_pred             eCC
Confidence            654

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=98.28  E-value=4.7e-07  Score=46.14  Aligned_cols=36  Identities=19%  Similarity=0.308  Sum_probs=28.9

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+..+.|.+++.+|+|.|+|.|.|..+   |..+.|+|
T Consensus        49 ~~~~~l~i~~~~~~d~G~Y~C~a~~s~~---S~~v~L~V   84 (84)
T d1fnla1          49 SQASSYFIDAATVNDSGEYRCQTNLSTL---SDPVQLEV   84 (84)
T ss_dssp             SSCSEEEESSCCGGGCEEEEEECSSSCC---CCCEEEEE
T ss_pred             ecceeeEecCCcccCCEEEEEEccCCCc---cccEEEEC
Confidence            3456789999999999999999988654   55677766

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.28  E-value=3.3e-06  Score=45.53  Aligned_cols=64  Identities=17%  Similarity=0.354  Sum_probs=44.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC--------------CCce-----eeeccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP--------------SGEK-----SLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~--------------~~~~-----~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|+.++|.|.........+.|++..  ..+.              ....     ......|.|.+++++|+|.|.
T Consensus        10 ~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Yy   89 (115)
T d1lp9e1          10 LVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDSALYY   89 (115)
T ss_dssp             EEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGCEEEE
T ss_pred             eEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccCccce
Confidence            567889999999999776566679999842  1110              0000     112335999999999999999


Q ss_pred             EEeec
Q psy7616          78 CTATN   82 (147)
Q Consensus        78 C~~~~   82 (147)
                      |.+..
T Consensus        90 Ca~~~   94 (115)
T d1lp9e1          90 CALFL   94 (115)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            97654

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.28  E-value=3.8e-07  Score=49.04  Aligned_cols=34  Identities=24%  Similarity=0.287  Sum_probs=27.5

Q ss_pred             ccCCceEEeecCCCCCe---EEEEEeecCCCCCcCeee
Q psy7616         108 LEGFSITLEKVDRHQAG---VYQCTATNGVGDPVTVDM  142 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G---~Y~C~a~n~~g~~~~~~~  142 (147)
                      .....|.+.+++.+|+|   .|+|.|.|.+|.. +..+
T Consensus        60 ~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~-~~~~   96 (111)
T d1biha2          60 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDE-EVVL   96 (111)
T ss_dssp             CTTSCEEEEEECGGGCCSSEEEEEEEECTTCSS-CEEE
T ss_pred             ccccccEEeeeEeeccCCceEEEEEEEeCCCCc-eEEE
Confidence            34567999999998877   7999999999977 4443

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.27  E-value=6.9e-06  Score=43.66  Aligned_cols=65  Identities=25%  Similarity=0.472  Sum_probs=44.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC--------------CCCce---eeeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL--------------PSGEK---SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~--------------~~~~~---~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|+.++|.|.........+.|++..  ..+              +....   ......|.|.++..+|++.|.|.
T Consensus        10 sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d1d5il1          10 SMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDMGIYYCL   89 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCCEEEEee
Confidence            557889999999998766555668899742  111              00000   11234699999999999999997


Q ss_pred             eecC
Q psy7616          80 ATNG   83 (147)
Q Consensus        80 ~~~~   83 (147)
                      ....
T Consensus        90 ~~~~   93 (107)
T d1d5il1          90 QYDE   93 (107)
T ss_dssp             ECSS
T ss_pred             eccC
Confidence            6543

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.26  E-value=3.4e-06  Score=45.04  Aligned_cols=64  Identities=19%  Similarity=0.439  Sum_probs=44.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCC-CC---------------CCcee---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSS-LP---------------SGEKS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~-~~---------------~~~~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|+.+.|.|...+.....+.|++.... .+               .....   .....|.|.+++.+|++.|.|.
T Consensus        12 ~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Dsa~YyCA   91 (109)
T d1bwwa_          12 SLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDIATYYCQ   91 (109)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcCceEEEe
Confidence            56788999999999987655566889983211 10               00001   1223689999999999999998


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        92 ~~~   94 (109)
T d1bwwa_          92 QYQ   94 (109)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            654

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=7.3e-06  Score=43.49  Aligned_cols=64  Identities=25%  Similarity=0.517  Sum_probs=44.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC--------------CCCcee---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL--------------PSGEKS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~--------------~~~~~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|+.++|.|...+.....+.|++..  ..+              ......   .....|.|.+++.+|++.|.|.
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   88 (106)
T d1lk3l1           9 ALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYFCQ   88 (106)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcccc
Confidence            467889999999999876555679999742  111              000001   1224689999999999999996


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        89 ~~~   91 (106)
T d1lk3l1          89 QSW   91 (106)
T ss_dssp             ECS
T ss_pred             ccc
Confidence            543

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=2.7e-08  Score=53.93  Aligned_cols=34  Identities=29%  Similarity=0.510  Sum_probs=29.8

Q ss_pred             ceEEeecCCCC-CeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQ-AGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d-~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      .|.+.+++.+| +|.|+|.|.|..|.. +..+.|.|
T Consensus        70 ~L~I~~v~~~D~~G~Y~C~A~N~~G~~-~~~~~L~V  104 (115)
T d2crya1          70 TLTISNIVRADFQTIYNCTAWNSFGSD-TEIIRLKE  104 (115)
T ss_dssp             EEECTTCCHHHHHSCEEEEEECSSCEE-EEEECCCC
T ss_pred             EEEEeccchhcCCeEEEEEEEECCCeE-EEEEEEEE
Confidence            47778999999 699999999999988 88888876

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=3e-06  Score=44.77  Aligned_cols=27  Identities=11%  Similarity=0.236  Sum_probs=23.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      ..+.+..++..|.|.|+|.|.|..|..
T Consensus        60 s~l~i~~~~~dd~g~ytC~A~n~~g~~   86 (103)
T d1iama1          60 VTTTVLVRRDHHGAQFSCRTELDLRPQ   86 (103)
T ss_dssp             EEEEEECCSSCSSCEEEEEEEEECGGG
T ss_pred             EEEEEeeehhHCCCEEEEEEEeCCCCc
Confidence            357778889999999999999999876

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=6.3e-06  Score=44.36  Aligned_cols=79  Identities=16%  Similarity=0.403  Sum_probs=47.4

Q ss_pred             ceEEeeCCeEEEEEeecCCC---CCceEEEecCCCCC---------------CCce-e-----eeccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNP---VPSIIWSKKDSSLP---------------SGEK-S-----LEGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~---~~~v~w~~~~~~~~---------------~~~~-~-----~~~~~l~~~~~~~~~~g   74 (147)
                      .+.+.+|++++|.|......   ...+.|++....-.               .... .     .....|.|.+++..|+|
T Consensus         8 ~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~DsG   87 (116)
T d1xeda_           8 EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQDDSG   87 (116)
T ss_dssp             EEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             EEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcCCCE
Confidence            56888999999999864322   23467887431100               0000 1     11236899999999999


Q ss_pred             EEEEEeecCCCCceEEeEEEEEee
Q psy7616          75 VYQCTATNGVGDPVTVDMTLEVLC   98 (147)
Q Consensus        75 ~y~C~~~~~~~~~~~~~~~l~v~~   98 (147)
                      .|.|.+...... ....+.|.|..
T Consensus        88 ~Y~C~v~~~~~~-~~~~v~L~V~~  110 (116)
T d1xeda_          88 RYKCGLGINSRG-LSFDVSLEVLE  110 (116)
T ss_dssp             EEEEEESCGGGC-CEEEEEEEEEC
T ss_pred             EEEEEEEcCCCC-ceEeEEEEEEC
Confidence            999988643322 23345555543

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=1.9e-05  Score=41.93  Aligned_cols=67  Identities=18%  Similarity=0.284  Sum_probs=43.0

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCC----------C---CCce-e-----eeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSL----------P---SGEK-S-----LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~----------~---~~~~-~-----~~~~~l~~~~~~~~~~g~   75 (147)
                      .+....|+.++|.|......  ...+.|++..  ...          .   .... .     .....|.|.+++.+|+|.
T Consensus         5 ~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~   84 (108)
T d1hkfa_           5 VLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGH   84 (108)
T ss_dssp             EEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEE
Confidence            35677899999999865432  2346798732  110          0   0011 1     122358899999999999


Q ss_pred             EEEEeecCCC
Q psy7616          76 YQCTATNGVG   85 (147)
Q Consensus        76 y~C~~~~~~~   85 (147)
                      |.|.+.....
T Consensus        85 Y~C~v~~~~~   94 (108)
T d1hkfa_          85 YWCRIYRPSD   94 (108)
T ss_dssp             EEEEEECTTT
T ss_pred             EEEEEecCCC
Confidence            9998875443

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.14  E-value=1.3e-05  Score=42.51  Aligned_cols=64  Identities=23%  Similarity=0.450  Sum_probs=44.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC--------------CCCcee---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL--------------PSGEKS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~--------------~~~~~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|+.++|.|.........+.|++..  ..+              +.....   .....|.|.++..+|++.|.|.
T Consensus         9 ~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~DsA~YyCa   88 (106)
T d1a0ql1           9 SLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDIATYYCL   88 (106)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCCEeEEEE
Confidence            557889999999998765555569999843  111              000111   1233699999999999999998


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        89 ~~~   91 (106)
T d1a0ql1          89 QYY   91 (106)
T ss_dssp             ECS
T ss_pred             EeC
Confidence            654

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.10  E-value=1.7e-05  Score=42.61  Aligned_cols=64  Identities=16%  Similarity=0.310  Sum_probs=43.2

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEecCC--CC---------------------CCCce-e-----eeccceEEEee
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKKDS--SL---------------------PSGEK-S-----LEGFSITLEKV   68 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~~--~~---------------------~~~~~-~-----~~~~~l~~~~~   68 (147)
                      .+.+..|+.+.|.|...+. ....+.|++...  ..                     ..... .     .....|.|.++
T Consensus         7 ~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~   86 (115)
T d2atpb1           7 SLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSIMNV   86 (115)
T ss_dssp             EEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEECSC
T ss_pred             cEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEeeccc
Confidence            5578899999999997663 345689997321  10                     00000 0     11235899999


Q ss_pred             cCCCCeEEEEEeec
Q psy7616          69 DRHQAGVYQCTATN   82 (147)
Q Consensus        69 ~~~~~g~y~C~~~~   82 (147)
                      ..+|+|.|.|....
T Consensus        87 ~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          87 KPEDSDFYFCATVG  100 (115)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCCCCcEEEEeEcC
Confidence            99999999998754

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.07  E-value=6.8e-06  Score=43.37  Aligned_cols=64  Identities=20%  Similarity=0.339  Sum_probs=43.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC--------------CCce---eeeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP--------------SGEK---SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~--------------~~~~---~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|+.++|.|.........+.|++..  ..+.              ....   ......|.|.+++.+|++.|.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            567889999999998765445568999843  1110              0000   11223688999999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        87 ~~~   89 (103)
T d8faba1          87 AWD   89 (103)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            654

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.06  E-value=1.3e-05  Score=42.02  Aligned_cols=75  Identities=20%  Similarity=0.288  Sum_probs=46.6

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCC--CCceEEEecCCCCCCCcee-----eeccceE---EEeecCCCCeEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNP--VPSIIWSKKDSSLPSGEKS-----LEGFSIT---LEKVDRHQAGVY   76 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~~~~~~~~~-----~~~~~l~---~~~~~~~~~g~y   76 (147)
                      .||.+.+.+..   .+..|+..+|.|.+.+..  ...+.|.++|..+......     ...+...   .-.+...+...|
T Consensus         2 ~pP~V~v~p~~---~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~y   78 (100)
T d1muja1           2 EAPQATVFPKS---PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIY   78 (100)
T ss_dssp             CCCEEEEEESS---CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCE
T ss_pred             CCCEEEEEcCC---ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEE
Confidence            46777766543   345688889999998853  3469999999877543211     1111111   112334566789


Q ss_pred             EEEeecCC
Q psy7616          77 QCTATNGV   84 (147)
Q Consensus        77 ~C~~~~~~   84 (147)
                      .|++.+..
T Consensus        79 tC~V~H~s   86 (100)
T d1muja1          79 DCKVEHWG   86 (100)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99999864

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.06  E-value=1.2e-05  Score=42.75  Aligned_cols=64  Identities=19%  Similarity=0.392  Sum_probs=42.7

Q ss_pred             ceEEeeCCeEEEEEeecCCC-CCceEEEecC--CCCC--------------CCcee---eeccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNP-VPSIIWSKKD--SSLP--------------SGEKS---LEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~--~~~~--------------~~~~~---~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+.+..|+.++|.|...... ...+.|++..  ..+.              .....   .....|.|.+++.+|+|.|.|
T Consensus        10 ~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa~YyC   89 (108)
T d2fx7l1          10 TQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFAVYYC   89 (108)
T ss_dssp             EEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCSEEEE
T ss_pred             eEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccEEEee
Confidence            56788999999999875432 3358899843  2110              00000   122368999999999999999


Q ss_pred             Eeec
Q psy7616          79 TATN   82 (147)
Q Consensus        79 ~~~~   82 (147)
                      ....
T Consensus        90 a~~~   93 (108)
T d2fx7l1          90 QQYG   93 (108)
T ss_dssp             EECS
T ss_pred             ecCC
Confidence            7653

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.05  E-value=6.3e-05  Score=40.05  Aligned_cols=64  Identities=22%  Similarity=0.392  Sum_probs=44.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC-------C------Cce-e-----eeccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP-------S------GEK-S-----LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~-------~------~~~-~-----~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+.+|+.++|.|.........+.|++..  ..+.       .      ... .     .....|.|.++...|+|.|.
T Consensus         9 s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1bd2d1           9 SLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGDSAVYF   88 (111)
T ss_dssp             EEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEEEE
T ss_pred             EEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccccEEEE
Confidence            557889999999998766555568899832  2210       0      000 0     12336899999999999999


Q ss_pred             EEeec
Q psy7616          78 CTATN   82 (147)
Q Consensus        78 C~~~~   82 (147)
                      |....
T Consensus        89 Ca~~~   93 (111)
T d1bd2d1          89 CAAME   93 (111)
T ss_dssp             EEEES
T ss_pred             eeccC
Confidence            97764

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=3.1e-05  Score=41.07  Aligned_cols=65  Identities=12%  Similarity=0.292  Sum_probs=40.3

Q ss_pred             eEEeeCCeEEEEEeecCCC---CCceEEE--ecCCCCC----------C-----C-c---eeeeccceEEEeecCCCCeE
Q psy7616          20 LTVRKGGTITLECKASGNP---VPSIIWS--KKDSSLP----------S-----G-E---KSLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~---~~~v~w~--~~~~~~~----------~-----~-~---~~~~~~~l~~~~~~~~~~g~   75 (147)
                      +.+..|+++.|+|......   ...+.|+  ++.....          .     . .   ......+|.|.+++..|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            4677899999999875322   2234443  3332110          0     0 0   01123469999999999999


Q ss_pred             EEEEeecCC
Q psy7616          76 YQCTATNGV   84 (147)
Q Consensus        76 y~C~~~~~~   84 (147)
                      |.|.+....
T Consensus        84 Y~C~V~~~~   92 (110)
T d1ncna_          84 YQCIIHHKK   92 (110)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEecC
Confidence            999986533

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.05  E-value=1.4e-05  Score=42.55  Aligned_cols=63  Identities=19%  Similarity=0.346  Sum_probs=43.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCCC-------C------c-e-----eeeccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLPS-------G------E-K-----SLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~~-------~------~-~-----~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|+.++|.|.........+.|++..  .....       .      . .     ......|.|.++..+|+|.|.
T Consensus         8 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (110)
T d1u3ha1           8 SLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDSATYF   87 (110)
T ss_dssp             SEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTSCSEEE
T ss_pred             EEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCCceeEe
Confidence            567889999999998765444468899842  21100       0      0 0     012236899999999999999


Q ss_pred             EEee
Q psy7616          78 CTAT   81 (147)
Q Consensus        78 C~~~   81 (147)
                      |.+.
T Consensus        88 Ca~~   91 (110)
T d1u3ha1          88 CAAS   91 (110)
T ss_dssp             ECCE
T ss_pred             eeec
Confidence            9765

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.04  E-value=1.5e-05  Score=42.53  Aligned_cols=63  Identities=30%  Similarity=0.587  Sum_probs=42.4

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC-----------------CCCce----eeeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL-----------------PSGEK----SLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~-----------------~~~~~----~~~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|++++|.|...+ ....+.|++..  ..+                 .....    ......|.|.++..+|+|.
T Consensus        10 ~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   88 (110)
T d2aq2a1          10 NKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESATPSQTSV   88 (110)
T ss_dssp             EEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             eEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCCHhhCEE
Confidence            557889999999998754 44579999832  111                 00000    0123357888999999999


Q ss_pred             EEEEeec
Q psy7616          76 YQCTATN   82 (147)
Q Consensus        76 y~C~~~~   82 (147)
                      |.|....
T Consensus        89 YyCa~~~   95 (110)
T d2aq2a1          89 YFCASGG   95 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEeeCC
Confidence            9997654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.04  E-value=3.2e-06  Score=45.00  Aligned_cols=64  Identities=22%  Similarity=0.450  Sum_probs=43.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CC--------------CCCce---eeeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SL--------------PSGEK---SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~--------------~~~~~---~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.++|.|.........+.|++...  .+              .....   ......|.|.+++.+|+|.|.|.
T Consensus        10 s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   89 (107)
T d3cx5k1          10 SLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDIATYFCQ   89 (107)
T ss_dssp             TCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCCSEEEEE
T ss_pred             EEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCCCcEEee
Confidence            4477899999999987665555699998432  10              00000   11234689999999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        90 ~~~   92 (107)
T d3cx5k1          90 HHI   92 (107)
T ss_dssp             ECS
T ss_pred             eCC
Confidence            543

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.04  E-value=1.9e-05  Score=42.29  Aligned_cols=64  Identities=20%  Similarity=0.437  Sum_probs=43.2

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecC--CCCC-----CCce---e---eeccceEEEeecCCCCeEEEEEeec
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKD--SSLP-----SGEK---S---LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~--~~~~-----~~~~---~---~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .+...+|+.++|.|...+.  ....+.|++..  ....     ....   .   .....|.|.+++.+|+|.|.|.+..
T Consensus         9 s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCa~~~   87 (113)
T d1vesa_           9 TATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYKCQAFY   87 (113)
T ss_dssp             EEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEeeeeec
Confidence            5678899999999987643  33568999732  2110     0111   0   1123689999999999999998753

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.02  E-value=2.6e-05  Score=38.89  Aligned_cols=66  Identities=15%  Similarity=0.381  Sum_probs=46.4

Q ss_pred             ceEEeeCCeEEEEEeecC-CCCCceEEEecCCCC----C--CCcee---e----eccceEEEeecCCCCeEEEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASG-NPVPSIIWSKKDSSL----P--SGEKS---L----EGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~-~~~~~v~w~~~~~~~----~--~~~~~---~----~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      ...+..|+.+.++|.+.- ...|.++|.+-++..    .  +....   .    .-..|.|..+-++|.|.|+|.+.-..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            457889999999999754 367899999865432    1  11111   1    12257777888999999999987543

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.01  E-value=2.2e-05  Score=42.18  Aligned_cols=65  Identities=20%  Similarity=0.437  Sum_probs=45.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC-------CC-------c-ee-----eeccceEEEeecCCCCeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP-------SG-------E-KS-----LEGFSITLEKVDRHQAGVY   76 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~-------~~-------~-~~-----~~~~~l~~~~~~~~~~g~y   76 (147)
                      .+.+.+|+.++|.|.........+.|++..  ..+.       ..       . ..     .....|.|.++..+|+|.|
T Consensus         9 ~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   88 (115)
T d1j8hd1           9 HVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMSDAAEY   88 (115)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGGGCEEE
T ss_pred             eEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccccCCccc
Confidence            568899999999998765555679999832  2110       00       0 00     1122599999999999999


Q ss_pred             EEEeecC
Q psy7616          77 QCTATNG   83 (147)
Q Consensus        77 ~C~~~~~   83 (147)
                      .|.+...
T Consensus        89 yCa~~~~   95 (115)
T d1j8hd1          89 FCAVSES   95 (115)
T ss_dssp             EEEEESS
T ss_pred             eeeecCC
Confidence            9988653

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.01  E-value=6.5e-05  Score=40.04  Aligned_cols=65  Identities=22%  Similarity=0.447  Sum_probs=42.4

Q ss_pred             ceEEeeCCeEEEEEeecCC----CCCceEEEecC--CCC--------------CCCceee---eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGN----PVPSIIWSKKD--SSL--------------PSGEKSL---EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~----~~~~v~w~~~~--~~~--------------~~~~~~~---~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+.+|+.++|.|.....    ....+.|++..  ..+              +......   ....|.|.++.++|++.
T Consensus        10 s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~~~DsA~   89 (111)
T d2gsia1          10 SLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVEEEDAAT   89 (111)
T ss_dssp             EEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEE
T ss_pred             EEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhcccccccccCCce
Confidence            5678899999999976432    12348899842  211              0011111   22368999999999999


Q ss_pred             EEEEeecC
Q psy7616          76 YQCTATNG   83 (147)
Q Consensus        76 y~C~~~~~   83 (147)
                      |.|.....
T Consensus        90 YyCa~~~~   97 (111)
T d2gsia1          90 YYCSHIRE   97 (111)
T ss_dssp             EEEEECSS
T ss_pred             EEEEECCC
Confidence            99976543

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.00  E-value=3.3e-05  Score=41.31  Aligned_cols=65  Identities=20%  Similarity=0.449  Sum_probs=43.4

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecC--CCCC-----CCcee---e---eccceEEEeecCCCCeEEEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKD--SSLP-----SGEKS---L---EGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~--~~~~-----~~~~~---~---~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+....|+.++|.|...+.  ....+.|++..  ....     .....   .   ....|.|.++..+|+|.|.|.+...
T Consensus         8 s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_           8 SVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             EEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECBT
T ss_pred             EEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEeEEEecC
Confidence            5577889999999987543  34679999832  1110     01110   1   1236899999999999999976543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.00  E-value=2.5e-05  Score=41.59  Aligned_cols=64  Identities=27%  Similarity=0.456  Sum_probs=43.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC-CCC---------------CCce---eeeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS-SLP---------------SGEK---SLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~-~~~---------------~~~~---~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|+.++|.|.........+.|++... ..+               ....   ......|.|.++.++|+|.|.|.
T Consensus        10 ~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DSa~YyCA   89 (109)
T d1mqkl_          10 SLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDFGSYYCQ   89 (109)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCCeeEEEe
Confidence            5577889999999987654555699998331 110               0000   11233689999999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      +..
T Consensus        90 ~~~   92 (109)
T d1mqkl_          90 HHY   92 (109)
T ss_dssp             ECS
T ss_pred             eeC
Confidence            653

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.00  E-value=5.8e-05  Score=40.54  Aligned_cols=65  Identities=25%  Similarity=0.487  Sum_probs=43.5

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEec--CCCCC------C----------Ccee---e---eccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKK--DSSLP------S----------GEKS---L---EGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~--~~~~~------~----------~~~~---~---~~~~l~~~~~~~~~~   73 (147)
                      .+.+..|++++|.|...+. ....+.|++.  +..+.      .          ....   .   ....|.|.+++.+|+
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Ds   88 (116)
T d1tvda_           9 DQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPVRTEDS   88 (116)
T ss_dssp             CEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSCCGGGC
T ss_pred             CEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecCcccccc
Confidence            5688899999999986543 4557899972  22110      0          0100   0   112588999999999


Q ss_pred             eEEEEEeecC
Q psy7616          74 GVYQCTATNG   83 (147)
Q Consensus        74 g~y~C~~~~~   83 (147)
                      |.|.|.+...
T Consensus        89 g~YyCa~~~~   98 (116)
T d1tvda_          89 ATYYCAFTLP   98 (116)
T ss_dssp             EEEEEEEECT
T ss_pred             ccceeeEecC
Confidence            9999987653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.99  E-value=5.4e-05  Score=40.48  Aligned_cols=64  Identities=20%  Similarity=0.402  Sum_probs=42.5

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEec--CCCCC-------CCc--e--------ee---eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKK--DSSLP-------SGE--K--------SL---EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~--~~~~~-------~~~--~--------~~---~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+.+|++++|.|..... ....+.|++.  +..+.       ...  .        ..   ....|.|.++...|+|.
T Consensus         9 ~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~   88 (114)
T d2ak4d1           9 EISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQVVDSAV   88 (114)
T ss_dssp             EEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCCGGGCEE
T ss_pred             eEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccccccCCC
Confidence            6678999999999986543 3345789983  22210       000  0        00   12368999999999999


Q ss_pred             EEEEeec
Q psy7616          76 YQCTATN   82 (147)
Q Consensus        76 y~C~~~~   82 (147)
                      |.|.+..
T Consensus        89 YyCa~~~   95 (114)
T d2ak4d1          89 YFCALSG   95 (114)
T ss_dssp             EEEEEEC
T ss_pred             ceEeCCC
Confidence            9997654

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=1.7e-06  Score=44.95  Aligned_cols=31  Identities=19%  Similarity=0.333  Sum_probs=24.0

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.+.++..+|+|.|+|.|.|.     +.++.|.|
T Consensus        62 ~~L~I~~~~~~D~G~Y~c~a~n~-----~~s~~l~V   92 (94)
T d1pd6a_          62 RTLTISQCSLADDAAYQCVVGGE-----KCSTELFV   92 (94)
T ss_dssp             EEEEECSCSSSSCEEEEEEETTE-----EECCEEEE
T ss_pred             EEeecCCCCceecEEEEEEEeeE-----EEEEEEEE
Confidence            35888999999999999999764     33445554

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.98  E-value=2.5e-05  Score=41.94  Aligned_cols=64  Identities=25%  Similarity=0.502  Sum_probs=43.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEec--CCCCC-------CCce-------------eeeccceEEEeecCCCCeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKK--DSSLP-------SGEK-------------SLEGFSITLEKVDRHQAGVY   76 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~~-------~~~~-------------~~~~~~l~~~~~~~~~~g~y   76 (147)
                      .+.+.+|++++|.|.........+.|++.  +....       ....             ......|.|.++..+|+|.|
T Consensus         9 ~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsg~Y   88 (115)
T d1i9ea_           9 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSDSAVY   88 (115)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGGCEEE
T ss_pred             eEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccccccee
Confidence            56888999999999876545566889973  22110       0000             01223699999999999999


Q ss_pred             EEEeec
Q psy7616          77 QCTATN   82 (147)
Q Consensus        77 ~C~~~~   82 (147)
                      .|.+..
T Consensus        89 yCa~~~   94 (115)
T d1i9ea_          89 FCAVSG   94 (115)
T ss_dssp             EEEEEE
T ss_pred             cccccC
Confidence            997653

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=3.1e-05  Score=41.13  Aligned_cols=63  Identities=22%  Similarity=0.309  Sum_probs=39.3

Q ss_pred             EEeeCCeEEEEEeecC-CCCC--ceEEEecCCCCCCCce---------eeeccceEEEeecCCCC-eEEEEEeecCC
Q psy7616          21 TVRKGGTITLECKASG-NPVP--SIIWSKKDSSLPSGEK---------SLEGFSITLEKVDRHQA-GVYQCTATNGV   84 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~-~~~~--~v~w~~~~~~~~~~~~---------~~~~~~l~~~~~~~~~~-g~y~C~~~~~~   84 (147)
                      .+..|+.++|.|.+.+ .|.+  .+.|++++..+.....         ....+.+.+. +...|. ..|+|++.+..
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~-~~~~D~g~~ltC~a~~~~   87 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFT-PVIEDIGKVLVCRAKLHI   87 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEEC-CCGGGTTCEEEEEEEECS
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEcc-CChHHCCcEEEEEEEcCc
Confidence            3679999999999765 3543  5889998765421110         1112234443 444455 47999998754

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=1.1e-05  Score=42.28  Aligned_cols=77  Identities=18%  Similarity=0.273  Sum_probs=47.0

Q ss_pred             EEeCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCcee----eeccceE---EEeecCCCCeE
Q psy7616           5 QMVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEKS----LEGFSIT---LEKVDRHQAGV   75 (147)
Q Consensus         5 ~~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~~----~~~~~l~---~~~~~~~~~g~   75 (147)
                      ++.+|.+.+.+..   .+..|+..+|.|.+.|. |. ..+.|.+++..+......    ...+...   .-.+...+.+.
T Consensus         2 v~~~P~V~v~~~~---~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~   78 (100)
T d1k5nb_           2 IQRTPKIQVYSRH---PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDE   78 (100)
T ss_dssp             CCBCCEEEEEESS---CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCC
T ss_pred             ccCCCeeEEEcCC---cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCE
Confidence            4467777664332   24578888999999885 33 368999998876432211    1111111   12334456678


Q ss_pred             EEEEeecCC
Q psy7616          76 YQCTATNGV   84 (147)
Q Consensus        76 y~C~~~~~~   84 (147)
                      |+|.+.+..
T Consensus        79 ytC~V~H~s   87 (100)
T d1k5nb_          79 YACRVNHVT   87 (100)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999998854

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=97.96  E-value=1e-06  Score=45.36  Aligned_cols=24  Identities=17%  Similarity=0.162  Sum_probs=20.5

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      .|.+.+++.+|+|.|+|.|.|..+
T Consensus        57 ~L~I~~~~~~D~G~Y~c~a~n~~~   80 (89)
T d1tiua_          57 ILILHNCQLGMTGEVSFQAANAKS   80 (89)
T ss_dssp             EEECCSCCSCCCSEECCBCSSCBC
T ss_pred             EEEEcCCChhcCEEEEEEECceEE
Confidence            577799999999999999977543

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.96  E-value=4.6e-05  Score=40.75  Aligned_cols=63  Identities=22%  Similarity=0.482  Sum_probs=43.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC------CCc------------eeeeccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP------SGE------------KSLEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~------~~~------------~~~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+.+.+|+.++|.|.... ....+.|++..  ..+.      ...            .......|.|.++..+|+|.|.|
T Consensus        10 ~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   88 (113)
T d1h5ba_          10 ALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLEDSGTYFC   88 (113)
T ss_dssp             EEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhHCEEEEE
Confidence            557889999999998765 44568999832  1110      000            01123368999999999999999


Q ss_pred             Eeec
Q psy7616          79 TATN   82 (147)
Q Consensus        79 ~~~~   82 (147)
                      .+..
T Consensus        89 a~~~   92 (113)
T d1h5ba_          89 AAEA   92 (113)
T ss_dssp             EEEC
T ss_pred             EecC
Confidence            8754

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.9e-06  Score=43.14  Aligned_cols=31  Identities=23%  Similarity=0.362  Sum_probs=24.1

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..|.+.+++.+|+|.|+|.|.|.     +.+++|.|
T Consensus        57 ~~L~I~~v~~~D~G~Y~C~a~n~-----~~~a~l~V   87 (90)
T d1x44a1          57 HILIIEGATKADAAEYSVMTTGG-----QSSAKLSV   87 (90)
T ss_dssp             EEEEEEEECTTTCSEEEEEETTE-----EEEEEEEE
T ss_pred             cEEEECccccccCEEEEEEEecc-----eEEEEEEE
Confidence            36888999999999999999774     33455554

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=97.95  E-value=2.9e-05  Score=41.46  Aligned_cols=65  Identities=22%  Similarity=0.424  Sum_probs=42.3

Q ss_pred             ceEEeeCCeEEEEEeecCC----CCCceEEEec--CCCCC--------------CCcee---eeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGN----PVPSIIWSKK--DSSLP--------------SGEKS---LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~----~~~~v~w~~~--~~~~~--------------~~~~~---~~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+.+|+.++|.|.....    ....+.|++.  +..+.              .....   .....|.|.+++.+|++.
T Consensus        10 ~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   89 (111)
T d1j05a_          10 SLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEADDVAT   89 (111)
T ss_dssp             EEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCGGGCEE
T ss_pred             EEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEcccccccCcc
Confidence            4567889999999986432    2234899984  22110              00001   123479999999999999


Q ss_pred             EEEEeecC
Q psy7616          76 YQCTATNG   83 (147)
Q Consensus        76 y~C~~~~~   83 (147)
                      |.|.....
T Consensus        90 YyCa~~~~   97 (111)
T d1j05a_          90 YYCQQTNE   97 (111)
T ss_dssp             EEEEECSS
T ss_pred             EEEeecCC
Confidence            99976543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=7.1e-05  Score=36.69  Aligned_cols=61  Identities=18%  Similarity=0.244  Sum_probs=40.2

Q ss_pred             EEeeCCeEEEEEeecCCCCC--ceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeecC
Q psy7616          21 TVRKGGTITLECKASGNPVP--SIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~--~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      ....|..+.|.|.....+.+  --.|.+++..+.........-...+  -+..++|.|.|.....
T Consensus         8 v~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~~~~tey~V--~~~D~SGeY~CVFl~~   70 (80)
T d3b5ha2           8 VEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKV--DSDDQWGEYSCVFLPE   70 (80)
T ss_dssp             EEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCCSEEEEEE--CGGGCCEEEEEEEEST
T ss_pred             cccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCCCCceEEEE--ecCCCCceEEEEEcCC
Confidence            45678899999997664433  3779999988765432222222333  3467899999987643

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.94  E-value=0.00013  Score=38.99  Aligned_cols=64  Identities=22%  Similarity=0.462  Sum_probs=43.1

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEecC--CCCC--------------CCc-eee-----eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKKD--SSLP--------------SGE-KSL-----EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~--~~~~--------------~~~-~~~-----~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+.+|+.+.|.|...+. ....+.|++..  ..+.              ... ...     ....|.|.++...|+|.
T Consensus         8 ~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~~Dsg~   87 (114)
T d3bp5a1           8 WLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTRRNDSGI   87 (114)
T ss_dssp             EEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             eEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccCcCCCeE
Confidence            5688999999999987553 33458899832  1110              000 010     12358899999999999


Q ss_pred             EEEEeec
Q psy7616          76 YQCTATN   82 (147)
Q Consensus        76 y~C~~~~   82 (147)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (114)
T d3bp5a1          88 YLCGAIS   94 (114)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEe
Confidence            9998764

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=2.7e-05  Score=41.76  Aligned_cols=70  Identities=24%  Similarity=0.399  Sum_probs=45.7

Q ss_pred             eEEcCCCCceEEeeCCeEEEEEeecCCC-CCceEEEecC--CCCCC-------------------Cce-e---eeccceE
Q psy7616          11 IRTSPSNGQLTVRKGGTITLECKASGNP-VPSIIWSKKD--SSLPS-------------------GEK-S---LEGFSIT   64 (147)
Q Consensus        11 ~~~~~~~~~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~--~~~~~-------------------~~~-~---~~~~~l~   64 (147)
                      +...|.  .+++..|++++|.|...... ...+.|++-.  ..+..                   ... .   .....|.
T Consensus         3 ~~~sP~--~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~   80 (114)
T d1akjd_           3 FRVSPL--DRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLT   80 (114)
T ss_dssp             EEEECC--SCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEE
T ss_pred             eeECCC--cEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcE
Confidence            445555  44788999999999875433 4458999833  11100                   000 0   1122589


Q ss_pred             EEeecCCCCeEEEEEeec
Q psy7616          65 LEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        65 ~~~~~~~~~g~y~C~~~~   82 (147)
                      |.++..+|+|.|.|.+..
T Consensus        81 I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          81 LSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             ESSCCGGGCEEEEEEEEE
T ss_pred             EccCCCCCCEEEeEeEcC
Confidence            999999999999998754

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1e-05  Score=42.76  Aligned_cols=68  Identities=19%  Similarity=0.307  Sum_probs=45.4

Q ss_pred             ceEEeeCCeEEEEEeecCCC----CCceEEEecCCCCC----C---------Cc-ee--eeccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNP----VPSIIWSKKDSSLP----S---------GE-KS--LEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~----~~~v~w~~~~~~~~----~---------~~-~~--~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      ++....|+.++|+|......    ...+.|.+++..+.    .         .. ..  .+..+|.|.+++.+|+|.|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCcEEEEECcCChHHCeEEEE
Confidence            45778999999999764322    13477877664320    0         00 01  123479999999999999999


Q ss_pred             EeecCCCC
Q psy7616          79 TATNGVGD   86 (147)
Q Consensus        79 ~~~~~~~~   86 (147)
                      .+.+..+.
T Consensus        83 ~V~~~~~~   90 (105)
T d1dr9a1          83 VVLKYEKD   90 (105)
T ss_dssp             EEEECCTT
T ss_pred             EEEeCCCC
Confidence            98765444

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.92  E-value=3.2e-05  Score=41.73  Aligned_cols=64  Identities=19%  Similarity=0.430  Sum_probs=44.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC------------------CCce-ee----eccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP------------------SGEK-SL----EGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~------------------~~~~-~~----~~~~l~~~~~~~~~~   73 (147)
                      .+.+.+|+.++|.|...+.....+.|++..  ..+.                  .... ..    ....|.|.+++.+|+
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Ds   89 (118)
T d2ij0c1          10 MVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTSAHPEDS   89 (118)
T ss_dssp             EEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECSCCGGGC
T ss_pred             eEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccccccccC
Confidence            457888999999998766556679999832  2110                  0000 01    123589999999999


Q ss_pred             eEEEEEeec
Q psy7616          74 GVYQCTATN   82 (147)
Q Consensus        74 g~y~C~~~~   82 (147)
                      +.|.|....
T Consensus        90 a~YyCa~~~   98 (118)
T d2ij0c1          90 GFYVCSALA   98 (118)
T ss_dssp             EEEEEEEEC
T ss_pred             ceEEEEEec
Confidence            999998754

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.92  E-value=8.9e-05  Score=39.39  Aligned_cols=64  Identities=17%  Similarity=0.401  Sum_probs=43.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC-------CC------ce-e-----eeccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP-------SG------EK-S-----LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~-------~~------~~-~-----~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|+.++|.|.........+.|++..  ..+.       ..      .. .     .....|.|.++.++|++.|.
T Consensus         9 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~Dsa~Yy   88 (110)
T d1ac6a_           9 QVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDSAVYY   88 (110)
T ss_dssp             EEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGGCEEEE
T ss_pred             eEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCCCcccc
Confidence            568889999999998655444568999832  1110       00      00 0     02336889999999999999


Q ss_pred             EEeec
Q psy7616          78 CTATN   82 (147)
Q Consensus        78 C~~~~   82 (147)
                      |....
T Consensus        89 CA~~~   93 (110)
T d1ac6a_          89 CALSG   93 (110)
T ss_dssp             EEEEE
T ss_pred             eeecC
Confidence            97654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=2.4e-05  Score=40.91  Aligned_cols=75  Identities=19%  Similarity=0.310  Sum_probs=45.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCcee----eeccce---EEEeecCCCCeEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEKS----LEGFSI---TLEKVDRHQAGVYQ   77 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~~----~~~~~l---~~~~~~~~~~g~y~   77 (147)
                      -+|.+.+.+..   ....|+..+|.|.+.+. |. ..+.|.+++..+......    ...+..   ..-.+...+...|+
T Consensus         3 ~~P~V~v~~~~---~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~yt   79 (99)
T d1lk2b_           3 KTPQIQVYSRH---PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYA   79 (99)
T ss_dssp             BCCEEEEEESS---CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEE
T ss_pred             CCCEEEEEcCC---CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEE
Confidence            46777664433   23467889999999885 33 369999998876432211    111111   11123445566899


Q ss_pred             EEeecCC
Q psy7616          78 CTATNGV   84 (147)
Q Consensus        78 C~~~~~~   84 (147)
                      |.+.+..
T Consensus        80 C~V~H~s   86 (99)
T d1lk2b_          80 CRVKHDS   86 (99)
T ss_dssp             EEEECTT
T ss_pred             EEEEeCC
Confidence            9998854

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.89  E-value=8.6e-05  Score=39.60  Aligned_cols=64  Identities=19%  Similarity=0.430  Sum_probs=41.8

Q ss_pred             ceEEeeCCeEEEEEeecCC-----CCCceEEEecC--CCCC--------------CCcee---eeccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGN-----PVPSIIWSKKD--SSLP--------------SGEKS---LEGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-----~~~~v~w~~~~--~~~~--------------~~~~~---~~~~~l~~~~~~~~~~g   74 (147)
                      .+.+.+|+.++|.|...+.     ....+.|++..  ....              .....   .....|.|.+++.+|++
T Consensus        10 slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~~DsA   89 (112)
T d1mjul1          10 SVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEAEDVG   89 (112)
T ss_dssp             EEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccccCCc
Confidence            5678899999999986542     13458899743  2110              00000   12235899999999999


Q ss_pred             EEEEEeec
Q psy7616          75 VYQCTATN   82 (147)
Q Consensus        75 ~y~C~~~~   82 (147)
                      .|.|....
T Consensus        90 vYyCa~~~   97 (112)
T d1mjul1          90 VYYCLQHL   97 (112)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEeCC
Confidence            99996543

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=4e-06  Score=45.18  Aligned_cols=36  Identities=25%  Similarity=0.584  Sum_probs=27.4

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEEC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL  147 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~  147 (147)
                      .+|+|.+++.+|+|.|.|.+.... ......++|+|+
T Consensus        74 ~sL~I~~l~~~DsG~Y~C~v~~~~-~~~~~~v~L~V~  109 (116)
T d1xeda_          74 FVVNIAQLSQDDSGRYKCGLGINS-RGLSFDVSLEVL  109 (116)
T ss_dssp             EEEEECSCCGGGCEEEEEEESCGG-GCCEEEEEEEEE
T ss_pred             EEEEEhhhCcCCCEEEEEEEEcCC-CCceEeEEEEEE
Confidence            468889999999999999886443 333556777774

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.7e-05  Score=41.56  Aligned_cols=65  Identities=15%  Similarity=0.303  Sum_probs=42.4

Q ss_pred             ceEEeeCCeEEEEEeecCC----C---CCceEEEecCCCCC------------------CCc-ee-----eeccceEEEe
Q psy7616          19 QLTVRKGGTITLECKASGN----P---VPSIIWSKKDSSLP------------------SGE-KS-----LEGFSITLEK   67 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~----~---~~~v~w~~~~~~~~------------------~~~-~~-----~~~~~l~~~~   67 (147)
                      .+++.+|+.+.|+|.....    .   ...+.|++....-.                  ..+ ..     .....|.|.+
T Consensus        10 svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   89 (121)
T d2g5ra1          10 SVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSIRD   89 (121)
T ss_dssp             EEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             EEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEECC
Confidence            6788999999999986321    1   12467887542110                  000 01     1233699999


Q ss_pred             ecCCCCeEEEEEeecC
Q psy7616          68 VDRHQAGVYQCTATNG   83 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~   83 (147)
                      ++..|+|.|.|++...
T Consensus        90 v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          90 ARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CChHHCEEEEEEEEeC
Confidence            9999999999998653

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.88  E-value=0.00014  Score=38.76  Aligned_cols=64  Identities=22%  Similarity=0.428  Sum_probs=41.5

Q ss_pred             ceEEeeCCeEEEEEeecCCC-----CCceEEEecC--CCC--------------CCCcee---eeccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNP-----VPSIIWSKKD--SSL--------------PSGEKS---LEGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-----~~~v~w~~~~--~~~--------------~~~~~~---~~~~~l~~~~~~~~~~g   74 (147)
                      .+.+.+|+.++|.|......     ..-+.|++..  ..+              +.....   .....|.|.++..+|++
T Consensus        10 sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~~~eDsA   89 (112)
T d1ncwl1          10 TISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRVEAEDLG   89 (112)
T ss_dssp             EEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECccccCcCE
Confidence            56888999999999854322     2348899742  111              011101   12236999999999999


Q ss_pred             EEEEEeec
Q psy7616          75 VYQCTATN   82 (147)
Q Consensus        75 ~y~C~~~~   82 (147)
                      .|.|...+
T Consensus        90 vYYC~~~~   97 (112)
T d1ncwl1          90 VYYCWQGT   97 (112)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEcCC
Confidence            99996543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=4.2e-05  Score=40.83  Aligned_cols=65  Identities=17%  Similarity=0.235  Sum_probs=42.4

Q ss_pred             ceEEeeCCeEEEEEeecC---CC---CCceEEEecCCCCCC----------------Cce-e-----eeccceEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASG---NP---VPSIIWSKKDSSLPS----------------GEK-S-----LEGFSITLEKVDR   70 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~---~~---~~~v~w~~~~~~~~~----------------~~~-~-----~~~~~l~~~~~~~   70 (147)
                      .+.+..|+.+.|+|....   ..   ...+.|++.......                ... .     .....|.|.+++.
T Consensus         9 ~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   88 (118)
T d1qfoa_           9 NVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDLKP   88 (118)
T ss_dssp             EEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSCCG
T ss_pred             EEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCCCh
Confidence            568899999999998642   11   123557764422100                000 1     1233699999999


Q ss_pred             CCCeEEEEEeecC
Q psy7616          71 HQAGVYQCTATNG   83 (147)
Q Consensus        71 ~~~g~y~C~~~~~   83 (147)
                      .|+|.|.|++...
T Consensus        89 ~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          89 EDSGTYNFRFEIS  101 (118)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             hHCEEEEEEEEeC
Confidence            9999999999754

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.82  E-value=0.00021  Score=38.06  Aligned_cols=64  Identities=20%  Similarity=0.435  Sum_probs=42.2

Q ss_pred             ceEEeeCCeEEEEEeecCCC-----CCceEEEecC--CCC--------------CCCcee---eeccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNP-----VPSIIWSKKD--SSL--------------PSGEKS---LEGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-----~~~v~w~~~~--~~~--------------~~~~~~---~~~~~l~~~~~~~~~~g   74 (147)
                      .+.+.+|+.++|.|...+..     ...+.|++..  ...              +.....   .....|.|.++..+|++
T Consensus        11 s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsa   90 (113)
T d1n4xl_          11 YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLG   90 (113)
T ss_dssp             EEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCCCcccCE
Confidence            45788999999999865422     2458899843  111              000001   12337999999999999


Q ss_pred             EEEEEeec
Q psy7616          75 VYQCTATN   82 (147)
Q Consensus        75 ~y~C~~~~   82 (147)
                      .|.|....
T Consensus        91 vYyCa~~~   98 (113)
T d1n4xl_          91 IYYCFQGS   98 (113)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEECC
Confidence            99996544

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.7e-05  Score=40.10  Aligned_cols=36  Identities=25%  Similarity=0.340  Sum_probs=29.7

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCC-CCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g-~~~~~~~~l~V  146 (147)
                      ....|.+++.+|+|.|.|.+.+..+ +..|..+.|.|
T Consensus        62 a~F~l~~vt~~~~G~Y~C~y~~~~~~S~~Sdpl~L~V   98 (99)
T d1ucta1          62 PEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVV   98 (99)
T ss_dssp             CEEEECSCCGGGCEEEEEEEEETTTEEEECCCEEEEE
T ss_pred             EEEEecCCCHHHCceEEEEEECCCcccCCCCCEEEEe
Confidence            3578899999999999999999875 44577788876

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.80  E-value=0.00029  Score=37.65  Aligned_cols=64  Identities=19%  Similarity=0.488  Sum_probs=43.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC-------CC------c-e-----eeeccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP-------SG------E-K-----SLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~-------~~------~-~-----~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+..|+.++|.|...+ ....+.|++..  ..+.       ..      . .     ......|.|.++..+|+|.|.
T Consensus         9 ~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   87 (115)
T d1ogad1           9 FLSIQEGENLTVYCNSSS-VFSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGDTGLYL   87 (115)
T ss_dssp             EEEEETTCCEEEEEECSS-CCSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGGCEEEE
T ss_pred             eEEECCCCCEEEEEEECC-CCceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccceeeEc
Confidence            557889999999998755 34578999832  1110       00      0 0     012336899999999999999


Q ss_pred             EEeecC
Q psy7616          78 CTATNG   83 (147)
Q Consensus        78 C~~~~~   83 (147)
                      |.....
T Consensus        88 Ca~~~~   93 (115)
T d1ogad1          88 CAGAGS   93 (115)
T ss_dssp             EEEECT
T ss_pred             ccccCC
Confidence            977643

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.79  E-value=0.00013  Score=38.36  Aligned_cols=63  Identities=21%  Similarity=0.433  Sum_probs=42.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCCCC----------------CCcee---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSSLP----------------SGEKS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~----------------~~~~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.++|.|.... ....+.|++......                .....   .....|.|.+++.+|++.|.|.
T Consensus         9 ~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~YyCa   87 (104)
T d1yqvl1           9 IMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAATYYCQ   87 (104)
T ss_dssp             EEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCCeEEEE
Confidence            567889999999998654 344588998432110                00001   1223699999999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        88 ~~~   90 (104)
T d1yqvl1          88 QWG   90 (104)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            543

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.79  E-value=6.1e-05  Score=39.22  Aligned_cols=75  Identities=19%  Similarity=0.325  Sum_probs=41.6

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCcee-----eeccc---eEEEeecCCCCeEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEKS-----LEGFS---ITLEKVDRHQAGVY   76 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~~-----~~~~~---l~~~~~~~~~~g~y   76 (147)
                      ++|.+.+.++.   ....++..+|.|.+.+. |. ..+.|.+++..+......     ...+.   ...-.+...+...|
T Consensus         3 V~P~V~l~~~~---~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~y   79 (98)
T d1d5mb1           3 VYPEVTVYPAK---TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVY   79 (98)
T ss_dssp             BCCEEEEEEC-----------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEE
T ss_pred             CCCEEEEECCC---ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEE
Confidence            56777765543   23456677899998875 33 369999998776433211     11111   11123445666789


Q ss_pred             EEEeecCC
Q psy7616          77 QCTATNGV   84 (147)
Q Consensus        77 ~C~~~~~~   84 (147)
                      .|.+.+..
T Consensus        80 tC~V~H~s   87 (98)
T d1d5mb1          80 TCQVEHPS   87 (98)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEECC
Confidence            99998854

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.78  E-value=9.2e-05  Score=38.15  Aligned_cols=58  Identities=22%  Similarity=0.424  Sum_probs=39.4

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCC-CCC-------CC------ce-e-----eeccceEEEeecCCCCeEEEEEeec
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDS-SLP-------SG------EK-S-----LEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~-~~~-------~~------~~-~-----~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      |+.++|.|.........+.|++... ..+       ..      .. .     .....|.|.+++.+|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            6889999997766666799998321 111       00      00 0     0123689999999999999998764

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.76  E-value=0.00013  Score=38.74  Aligned_cols=64  Identities=14%  Similarity=0.319  Sum_probs=42.7

Q ss_pred             ceEEeeCCeEEEEEeecCCC-CCceEEEec--CCCCCC-------C-----ce-----eeeccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNP-VPSIIWSKK--DSSLPS-------G-----EK-----SLEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~--~~~~~~-------~-----~~-----~~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+.+.+|++++|.|...... ...+.|++.  +..+..       .     ..     ......|.|.++..+|+|.|.|
T Consensus         7 svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   86 (110)
T d2esvd1           7 SMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVYYC   86 (110)
T ss_dssp             EEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEEEE
T ss_pred             EEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEEEE
Confidence            56888999999999865433 345889983  222100       0     00     0123358999999999999999


Q ss_pred             Eeec
Q psy7616          79 TATN   82 (147)
Q Consensus        79 ~~~~   82 (147)
                      .+..
T Consensus        87 a~~~   90 (110)
T d2esvd1          87 IVVR   90 (110)
T ss_dssp             EEEE
T ss_pred             EEeC
Confidence            7653

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1.5e-05  Score=43.45  Aligned_cols=37  Identities=32%  Similarity=0.575  Sum_probs=30.6

Q ss_pred             ccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          60 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        60 ~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ...|.|.++...|+|.|.|.+.|..|.. +..+.|.|.
T Consensus        93 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~V~  129 (130)
T d1gxea_          93 RSIFTVEGAEKEDEGVYTVTVKNPVGED-QVNLTVKVI  129 (130)
T ss_dssp             EEEEECSCCCTTTCEEEEEEEECSSCEE-EEEEEEEEC
T ss_pred             EEEEEECcCChhcCEEEEEEEEECCCEE-EEEEEEEEE
Confidence            3469999999999999999999998875 667766653

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.76  E-value=1e-05  Score=42.15  Aligned_cols=32  Identities=16%  Similarity=0.447  Sum_probs=25.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      ..+|.|.+++.+|+|.|+|.+.+.     +..+.|.|
T Consensus        66 ~~sL~I~~l~~~DsG~Y~C~v~~~-----~~~v~L~V   97 (97)
T d2nxyb1          66 NFPLIIKNLKIEDSDTYICEVEDQ-----KEEVQLLV   97 (97)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTE-----EEEEEEEE
T ss_pred             EEEEEECCCChHHCEEEEEEEecC-----CeEEEEEC
Confidence            347999999999999999999643     44566655

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.75  E-value=0.00013  Score=38.99  Aligned_cols=65  Identities=15%  Similarity=0.362  Sum_probs=43.3

Q ss_pred             ceEEeeCCeEEEEEeecCC-CCCceEEEecC--CCCC----------C----C-cee-----eeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGN-PVPSIIWSKKD--SSLP----------S----G-EKS-----LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~-~~~~v~w~~~~--~~~~----------~----~-~~~-----~~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+.+|+.++|.|..... ....+.|++..  ..+.          .    . ...     .....|.|.+++.+|+|.
T Consensus         8 ~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   87 (115)
T d1fo0a_           8 SISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIEDSAV   87 (115)
T ss_dssp             EEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGGGCEE
T ss_pred             EEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCcccccc
Confidence            6688999999999986543 34458899832  1110          0    0 000     012359999999999999


Q ss_pred             EEEEeecC
Q psy7616          76 YQCTATNG   83 (147)
Q Consensus        76 y~C~~~~~   83 (147)
                      |.|.+...
T Consensus        88 YyCa~~~~   95 (115)
T d1fo0a_          88 YFCAMRGD   95 (115)
T ss_dssp             EEEEEECC
T ss_pred             ccceeecC
Confidence            99987643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.74  E-value=9.4e-05  Score=39.35  Aligned_cols=64  Identities=19%  Similarity=0.405  Sum_probs=42.9

Q ss_pred             ceEEeeCCeEEEEEeecCCCC--CceEEEecC--CCC--------------CCCcee-----eeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPV--PSIIWSKKD--SSL--------------PSGEKS-----LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~--------------~~~~~~-----~~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+.+|++++|.|...+...  .-+.|++..  ..+              ......     .....|.|.++..+|++.
T Consensus         9 s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Dsa~   88 (111)
T d1cd0a_           9 SVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEAD   88 (111)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             eeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcccCcE
Confidence            568899999999998765432  348999843  111              000001     123368899999999999


Q ss_pred             EEEEeec
Q psy7616          76 YQCTATN   82 (147)
Q Consensus        76 y~C~~~~   82 (147)
                      |.|....
T Consensus        89 YyCA~~~   95 (111)
T d1cd0a_          89 YYCQSYD   95 (111)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecc
Confidence            9997654

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.71  E-value=5.4e-05  Score=39.65  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=45.4

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce----e-ee------ccceEEEeecCCC
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK----S-LE------GFSITLEKVDRHQ   72 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~----~-~~------~~~l~~~~~~~~~   72 (147)
                      +++|.+.+.+..   ....|+..+|.|.+.+. |. ..+.|.++|..+.....    . ..      .+.|.+   ...+
T Consensus         3 ~v~P~V~v~~~~---~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~   76 (101)
T d1fnga1           3 NVAPEVTVLSRS---PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTF---LPST   76 (101)
T ss_dssp             CBCCEEEEEESS---CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEE---CCCT
T ss_pred             CcCCeEEEeCCC---cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEE---cCCC
Confidence            367888775543   24567788999998875 33 46999999876543211    0 11      112322   3344


Q ss_pred             CeEEEEEeecCC
Q psy7616          73 AGVYQCTATNGV   84 (147)
Q Consensus        73 ~g~y~C~~~~~~   84 (147)
                      ...|.|.+.+..
T Consensus        77 ~~~ytC~V~H~s   88 (101)
T d1fnga1          77 DDFYDCEVDHWG   88 (101)
T ss_dssp             TCCEEEEEECTT
T ss_pred             CCEEEEEEEECC
Confidence            567999998853

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00015  Score=37.47  Aligned_cols=59  Identities=15%  Similarity=0.302  Sum_probs=38.6

Q ss_pred             eCCeEEEEEeecC-CCCCceEEEecCCCCCCCcee---e-------eccceEEEeecCCCCeEEEEEeecCCC
Q psy7616          24 KGGTITLECKASG-NPVPSIIWSKKDSSLPSGEKS---L-------EGFSITLEKVDRHQAGVYQCTATNGVG   85 (147)
Q Consensus        24 ~g~~~~l~C~~~~-~~~~~v~w~~~~~~~~~~~~~---~-------~~~~l~~~~~~~~~~g~y~C~~~~~~~   85 (147)
                      .++.+.|.|.+.| .|.+.|.|.+++..+......   .       -.+.|.+   ...+...|.|.+.+..-
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~~l   84 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHL   84 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEc---cCCccceEEEEEEecCC
Confidence            4677899999876 577899999998776432221   0       1112333   33456789999988643

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=3.4e-05  Score=40.62  Aligned_cols=28  Identities=21%  Similarity=0.414  Sum_probs=23.3

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      ..+|.|.+++.+|+|.|.|.+.+..+..
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~V~~~~~~~   91 (105)
T d1dr9a1          64 NLSIVILALRPSDEGTYECVVLKYEKDA   91 (105)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCTTS
T ss_pred             cEEEEECcCChHHCeEEEEEEEeCCCCC
Confidence            4579999999999999999998765434

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.69  E-value=0.00067  Score=35.90  Aligned_cols=36  Identities=19%  Similarity=0.480  Sum_probs=25.3

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCC--cCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDP--VTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~--~~~~~~l~V  146 (147)
                      ..|+|.+++.+|+|.|.|.........  .-..++|.|
T Consensus        72 ~~lti~~L~~eDsa~YyCa~~~~~~~~~~~~~~~~L~V  109 (110)
T d1u9ka_          72 LQVQMTDLQVTDSGLYRCVIYHPPNDPVVLFHPVRLVV  109 (110)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTSCCEECSCCEEEEE
T ss_pred             EEEEECccccCCCEEEEEEEeCCCCCCEEEECCEEEEE
Confidence            458889999999999999986554332  123456655

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.67  E-value=0.00015  Score=38.61  Aligned_cols=65  Identities=17%  Similarity=0.340  Sum_probs=43.5

Q ss_pred             ceEEeeCCeEEEEEeecCCC---CCceEEEecC--CCCC--------------CCce---eeeccceEEEeecCCCCeEE
Q psy7616          19 QLTVRKGGTITLECKASGNP---VPSIIWSKKD--SSLP--------------SGEK---SLEGFSITLEKVDRHQAGVY   76 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~---~~~v~w~~~~--~~~~--------------~~~~---~~~~~~l~~~~~~~~~~g~y   76 (147)
                      .+.+.+|++++|.|...+..   ...+.|++..  ..+.              ....   ......|.|.+++.+|++.|
T Consensus         9 s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Y   88 (112)
T d1lgva1           9 SVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEADY   88 (112)
T ss_dssp             EEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             cEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCEEE
Confidence            56888999999999876532   2348899833  1110              0000   11234688999999999999


Q ss_pred             EEEeecC
Q psy7616          77 QCTATNG   83 (147)
Q Consensus        77 ~C~~~~~   83 (147)
                      .|.....
T Consensus        89 yCa~~~~   95 (112)
T d1lgva1          89 YCSSYDG   95 (112)
T ss_dssp             EEEEECS
T ss_pred             EEeeecC
Confidence            9977643

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.66  E-value=0.00033  Score=37.35  Aligned_cols=64  Identities=19%  Similarity=0.344  Sum_probs=43.3

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecCCCCC----------------CCcee---eeccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKDSSLP----------------SGEKS---LEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~~~~----------------~~~~~---~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+.+|+.++|.|...+..  ...+.|++....-.                .....   .....|.|.+++.+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            46788899999999875543  45689997432110                00001   12346899999999999999


Q ss_pred             EEeec
Q psy7616          78 CTATN   82 (147)
Q Consensus        78 C~~~~   82 (147)
                      |....
T Consensus        89 CA~~~   93 (114)
T d2rhea_          89 CAAWN   93 (114)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            97654

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=97.66  E-value=3.2e-05  Score=40.83  Aligned_cols=37  Identities=30%  Similarity=0.334  Sum_probs=30.5

Q ss_pred             eccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEE
Q psy7616          59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV   96 (147)
Q Consensus        59 ~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v   96 (147)
                      ....|.|.++...|+|.|.|.+.|..|.. ...+.|.|
T Consensus        72 ~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~-~~~~~L~V  108 (109)
T d2fdbp2          72 EIEVLYIRNVTFEDAGEYTCLAGNSIGIS-FHSAWLTV  108 (109)
T ss_dssp             EEEEEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEE
T ss_pred             CcEEEEECCCCHHHCeEEEEEEEECCCEE-EEEEEEEE
Confidence            34579999999999999999999998875 66666655

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.66  E-value=3.7e-05  Score=41.54  Aligned_cols=64  Identities=22%  Similarity=0.384  Sum_probs=43.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC--------------CCcee---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP--------------SGEKS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~--------------~~~~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+..|+.++|.|...+.....+.|++...  .+.              .....   .....|.|.+++..|++.|.|.
T Consensus        10 sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DsavYyCa   89 (119)
T d1f3rb2          10 LLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVATYFCY   89 (119)
T ss_dssp             EECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSEEEEE
T ss_pred             EEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeEEEee
Confidence            4567789999999987654445689998432  110              00001   1123689999999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        90 ~~~   92 (119)
T d1f3rb2          90 QYN   92 (119)
T ss_dssp             EES
T ss_pred             ccC
Confidence            654

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.66  E-value=0.0001  Score=39.17  Aligned_cols=63  Identities=17%  Similarity=0.424  Sum_probs=42.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC-----------------CCceee-----eccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP-----------------SGEKSL-----EGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~-----------------~~~~~~-----~~~~l~~~~~~~~~~g   74 (147)
                      .+.+..|++++|.|...+ ....+.|++..  ..+.                 ......     ....|.|.++..+|+|
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~~Dsa   86 (111)
T d2esve1           8 HSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAELEDSG   86 (111)
T ss_dssp             EEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCGGGCE
T ss_pred             EEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcccCCCc
Confidence            457889999999997544 34578899742  2110                 000111     1236899999999999


Q ss_pred             EEEEEeec
Q psy7616          75 VYQCTATN   82 (147)
Q Consensus        75 ~y~C~~~~   82 (147)
                      .|.|....
T Consensus        87 ~YyCa~~~   94 (111)
T d2esve1          87 VYFCASSQ   94 (111)
T ss_dssp             EEEEEEES
T ss_pred             eEEEeeeC
Confidence            99997543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.65  E-value=2.8e-05  Score=41.29  Aligned_cols=38  Identities=18%  Similarity=0.433  Sum_probs=27.1

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecCCCCC----cCeeeEEEE
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNGVGDP----VTVDMTLEV  146 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~----~~~~~~l~V  146 (147)
                      ...+|.|.+++.+|+|.|.|.+.......    ....+.|.|
T Consensus        67 ~~~sL~I~~v~~~D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V  108 (110)
T d1ncna_          67 DSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSV  108 (110)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred             CeEEEEECCCChhHCEEEEEEEEecCCCceEEEEcceEEEEE
Confidence            34579999999999999999996543222    133556655

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.65  E-value=0.00027  Score=37.69  Aligned_cols=63  Identities=21%  Similarity=0.482  Sum_probs=43.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCC--C-------C-C--------Cce-----eeeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSS--L-------P-S--------GEK-----SLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~--~-------~-~--------~~~-----~~~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+.+|+.++|.|.... ....+.|++...-  +       . .        ...     ......|.|.++..+|++.
T Consensus         8 ~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DSa~   86 (114)
T d1ogae1           8 YLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKNPTAF   86 (114)
T ss_dssp             EEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSCCCEE
T ss_pred             eEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcCCcee
Confidence            568889999999998753 4457899984321  0       0 0        000     0123369999999999999


Q ss_pred             EEEEeec
Q psy7616          76 YQCTATN   82 (147)
Q Consensus        76 y~C~~~~   82 (147)
                      |.|....
T Consensus        87 YyCa~~~   93 (114)
T d1ogae1          87 YLCASSS   93 (114)
T ss_dssp             EEEEEES
T ss_pred             EEEeecc
Confidence            9997664

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.64  E-value=0.00019  Score=36.95  Aligned_cols=73  Identities=18%  Similarity=0.286  Sum_probs=44.1

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCceee----ecc---ceEEEeecCCCCeEEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEKSL----EGF---SITLEKVDRHQAGVYQ   77 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~~~----~~~---~l~~~~~~~~~~g~y~   77 (147)
                      .||.+.+...     ...|+.++|.|.+.|. |. ..|.|.+++..+.......    ...   ....-.+...+...|.
T Consensus         2 ~PP~V~v~~~-----~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~yt   76 (94)
T d1t7va1           2 DPPSVVVTSH-----QAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYS   76 (94)
T ss_dssp             BCCEEEEEEE-----ECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEE
T ss_pred             cCCEeEEecc-----CCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEE
Confidence            4677766432     2357889999999885 43 3599999987764322211    011   1112233445566799


Q ss_pred             EEeecCC
Q psy7616          78 CTATNGV   84 (147)
Q Consensus        78 C~~~~~~   84 (147)
                      |.+.+..
T Consensus        77 C~V~H~s   83 (94)
T d1t7va1          77 CHVQHSS   83 (94)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9998854

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.63  E-value=7.2e-05  Score=39.89  Aligned_cols=63  Identities=16%  Similarity=0.404  Sum_probs=42.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC-----------------CCCce-e----eeccceEEEeecCCCCe
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL-----------------PSGEK-S----LEGFSITLEKVDRHQAG   74 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~-----------------~~~~~-~----~~~~~l~~~~~~~~~~g   74 (147)
                      .+.+.+|+.++|.|...+ ....+.|++..  ..+                 ..... .    .....|.|.+++++|++
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa   86 (112)
T d1kgce1           8 YKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQEDSA   86 (112)
T ss_dssp             EEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCGGGCE
T ss_pred             eEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCcCCCE
Confidence            457889999999998543 44578999832  111                 00000 0    11235889999999999


Q ss_pred             EEEEEeec
Q psy7616          75 VYQCTATN   82 (147)
Q Consensus        75 ~y~C~~~~   82 (147)
                      .|.|....
T Consensus        87 ~YyCa~~~   94 (112)
T d1kgce1          87 VYLCASSL   94 (112)
T ss_dssp             EEEEEEES
T ss_pred             EEEEeeeC
Confidence            99998754

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.63  E-value=0.00012  Score=38.07  Aligned_cols=75  Identities=16%  Similarity=0.318  Sum_probs=44.6

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-C-CCceEEEecCCCCCCCce----ee-eccceEE---EeecCCCCeEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-P-VPSIIWSKKDSSLPSGEK----SL-EGFSITL---EKVDRHQAGVY   76 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~w~~~~~~~~~~~~----~~-~~~~l~~---~~~~~~~~g~y   76 (147)
                      .||.+.+.+..   ....++.++|.|.+.+. | ...+.|.+++..+.....    .. ..+...+   -.+...+...|
T Consensus         2 ~PP~V~v~~~~---~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~y   78 (98)
T d1hdmb1           2 RPPSVQVAKTT---PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTY   78 (98)
T ss_dssp             BCCEEEEEECC---CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCE
T ss_pred             CCCEEEEEcCC---CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEE
Confidence            36777665432   24567789999999885 3 346999999876643211    11 1111111   12344555679


Q ss_pred             EEEeecCC
Q psy7616          77 QCTATNGV   84 (147)
Q Consensus        77 ~C~~~~~~   84 (147)
                      .|.+.+..
T Consensus        79 tC~V~H~s   86 (98)
T d1hdmb1          79 TCVVEHIG   86 (98)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99999854

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=5.4e-05  Score=39.95  Aligned_cols=25  Identities=8%  Similarity=0.061  Sum_probs=18.6

Q ss_pred             eEEeecCCCCCeEEEEEeecCCCCC
Q psy7616         113 ITLEKVDRHQAGVYQCTATNGVGDP  137 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a~n~~g~~  137 (147)
                      +.+...+..|.|.|+|.|.|..|..
T Consensus        65 l~~~~~~~d~g~~ytC~A~n~~~~~   89 (106)
T d1zxqa1          65 FNSTADREDGHRNFSCLAVLDLMSR   89 (106)
T ss_dssp             EEEECCGGGGGCEEEEEEEEECGGG
T ss_pred             EEEeeehhcCCcEEEEEEEecCCCC
Confidence            4445556677779999999998744

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=4.5e-05  Score=40.40  Aligned_cols=36  Identities=22%  Similarity=0.449  Sum_probs=25.6

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCCC--cCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGDP--VTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~~--~~~~~~l~V  146 (147)
                      ..|.|.+++.+|+|.|.|.+.......  ....+.|.|
T Consensus        70 ~~L~I~~l~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V  107 (108)
T d1hkfa_          70 FTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVV  107 (108)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECTTTCCEEEEEEEEEEE
T ss_pred             EEEEEhhhCCCCCEEEEEEEecCCCCcEEEeeEEEEEE
Confidence            468889999999999999987654333  233455554

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.62  E-value=8.9e-05  Score=39.34  Aligned_cols=64  Identities=17%  Similarity=0.307  Sum_probs=43.3

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCCC----------C---Cce-e---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSLP----------S---GEK-S---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~~----------~---~~~-~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|++++|.|.........+.|++..  ..+.          .   ... .   .....|.|.+++.+|++.|.|.
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyCA   88 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYCQ   88 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEEE
Confidence            467889999999998655444568999743  2110          0   000 1   1223688899999999999998


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        89 ~~~   91 (109)
T d1w72l1          89 VWD   91 (109)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            754

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00018  Score=37.02  Aligned_cols=73  Identities=21%  Similarity=0.319  Sum_probs=43.9

Q ss_pred             EeCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce----ee--eccc---eEEEeecCCCCe
Q psy7616           6 MVPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK----SL--EGFS---ITLEKVDRHQAG   74 (147)
Q Consensus         6 ~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~----~~--~~~~---l~~~~~~~~~~g   74 (147)
                      ++||.+.+..      ...++..+|.|.+.+. |. ..+.|.+++..+.....    ..  ....   ...-.+...+..
T Consensus         2 ~vpP~V~v~~------~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~   75 (94)
T d1de4a1           2 QVPPLVKVTH------HVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQ   75 (94)
T ss_dssp             CBCCEEEEEE------EECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGG
T ss_pred             CCCCEEEEEE------cCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCC
Confidence            3678776532      2346678999999884 43 36999999877643211    11  1111   111233445566


Q ss_pred             EEEEEeecCC
Q psy7616          75 VYQCTATNGV   84 (147)
Q Consensus        75 ~y~C~~~~~~   84 (147)
                      .|.|.+.+..
T Consensus        76 ~ytC~V~H~s   85 (94)
T d1de4a1          76 RYTCQVEHPG   85 (94)
T ss_dssp             GEEEEEECTT
T ss_pred             EEEEEEEeCC
Confidence            7999998863

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=5.5e-05  Score=40.38  Aligned_cols=65  Identities=12%  Similarity=0.283  Sum_probs=41.7

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEecCC--CCC------C-----C-----ce-ee-----eccceEEEeecCCC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKKDS--SLP------S-----G-----EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~~~--~~~------~-----~-----~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+.+.+|++++|.|...+.  ....+.|++...  ...      .     .     .. ..     ....|.|.+++.+|
T Consensus         8 ~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~D   87 (113)
T d1smoa_           8 KYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVED   87 (113)
T ss_dssp             EEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCccc
Confidence            3567789999999986432  344678998421  110      0     0     00 00     11258889999999


Q ss_pred             CeEEEEEeecC
Q psy7616          73 AGVYQCTATNG   83 (147)
Q Consensus        73 ~g~y~C~~~~~   83 (147)
                      +|.|.|.+...
T Consensus        88 sg~Y~Cav~~~   98 (113)
T d1smoa_          88 SGLYQCVIYQP   98 (113)
T ss_dssp             CEEEEEEECCT
T ss_pred             CceEEEEEECC
Confidence            99999987653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.60  E-value=0.00035  Score=37.20  Aligned_cols=64  Identities=27%  Similarity=0.498  Sum_probs=41.6

Q ss_pred             ceEEeeCCeEEEEEeecCC------CCCceEEEecC--CCC--------------CCCce---eeeccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASGN------PVPSIIWSKKD--SSL--------------PSGEK---SLEGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~------~~~~v~w~~~~--~~~--------------~~~~~---~~~~~~l~~~~~~~~~~   73 (147)
                      .+.+.+|+.++|.|...+.      ....+.|++..  ..+              .....   ......|.|.+++..|+
T Consensus        10 ~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~l~~~Ds   89 (113)
T d1q9ra1          10 SLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITSVQAEDL   89 (113)
T ss_dssp             EEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecccccCCC
Confidence            5578899999999976532      12348899842  111              00000   11223699999999999


Q ss_pred             eEEEEEeec
Q psy7616          74 GVYQCTATN   82 (147)
Q Consensus        74 g~y~C~~~~   82 (147)
                      |.|.|....
T Consensus        90 a~YyCA~~~   98 (113)
T d1q9ra1          90 AVYYCKQSY   98 (113)
T ss_dssp             EEEEEEECS
T ss_pred             eEEEecccC
Confidence            999997643

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.59  E-value=0.00014  Score=38.67  Aligned_cols=64  Identities=22%  Similarity=0.385  Sum_probs=42.2

Q ss_pred             ceEEeeCCeEEEEEeecCCCC---CceEEEecC--CCC--------------CCCce---eeeccceEEEeecCCCCeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPV---PSIIWSKKD--SSL--------------PSGEK---SLEGFSITLEKVDRHQAGVY   76 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~---~~v~w~~~~--~~~--------------~~~~~---~~~~~~l~~~~~~~~~~g~y   76 (147)
                      .+.+.+|+.++|.|...+...   ..+.|++..  ..+              .....   ......|.|.++..+|+|.|
T Consensus         9 slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa~Y   88 (110)
T d1oaql_           9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (110)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccEeE
Confidence            457889999999998764332   228899732  111              00000   11233689999999999999


Q ss_pred             EEEeec
Q psy7616          77 QCTATN   82 (147)
Q Consensus        77 ~C~~~~   82 (147)
                      .|....
T Consensus        89 yCa~~~   94 (110)
T d1oaql_          89 FCALWY   94 (110)
T ss_dssp             EEEEEE
T ss_pred             EEEccc
Confidence            998654

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=3.5e-05  Score=40.69  Aligned_cols=76  Identities=16%  Similarity=0.280  Sum_probs=44.4

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-C-CCceEEEecCCCCCCCce-----e-------eeccceEEEeecCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-P-VPSIIWSKKDSSLPSGEK-----S-------LEGFSITLEKVDRHQ   72 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~w~~~~~~~~~~~~-----~-------~~~~~l~~~~~~~~~   72 (147)
                      .+|.+.+.+++.  ....++.++|.|.+.+. | ...|.|.+++..+.....     .       .-.+.|.+..-.-..
T Consensus         3 ~~P~V~v~~p~~--~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~   80 (105)
T d1fp5a2           3 AAPEVYAFATPE--WPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQ   80 (105)
T ss_dssp             BCCEEEEEECCC--CSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTT
T ss_pred             CCCEEEEECCCh--HHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCC
Confidence            356665544432  23456789999998774 3 347999999877643211     1       111234443333234


Q ss_pred             CeEEEEEeecCC
Q psy7616          73 AGVYQCTATNGV   84 (147)
Q Consensus        73 ~g~y~C~~~~~~   84 (147)
                      ...|.|.+.+..
T Consensus        81 g~~ytC~V~H~~   92 (105)
T d1fp5a2          81 KDEFICRAVHEA   92 (105)
T ss_dssp             GGGEEEEEECTT
T ss_pred             CCEEEEEEEECC
Confidence            457999998854

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=4.8e-05  Score=39.38  Aligned_cols=35  Identities=20%  Similarity=0.279  Sum_probs=29.1

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCC-CCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVG-DPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g-~~~~~~~~l~V  146 (147)
                      ...|.+++.+|+|.|.|...+..+ +..|..+.|.|
T Consensus        58 ~F~i~~v~~~~~G~Y~C~y~~~~~~S~~Sd~leL~V   93 (95)
T d1olla1          58 KFYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVV   93 (95)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEECCCCCCEEEEE
T ss_pred             EEEEeeeecCCCceEEEEeCCCCCccCCCCCEEEEE
Confidence            577899999999999999998864 44577788876

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.58  E-value=0.00014  Score=38.84  Aligned_cols=63  Identities=17%  Similarity=0.386  Sum_probs=41.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCCC--C-----------------CCCcee----eeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDSS--L-----------------PSGEKS----LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~--~-----------------~~~~~~----~~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+.+|+.++|.|.... ....+.|++...-  +                 +.....    .....|.|.+++.+|++.
T Consensus        10 ~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   88 (113)
T d1nfdb1          10 HIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALELEDSAM   88 (113)
T ss_dssp             EEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCCGGGCEE
T ss_pred             EEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccCcCCcee
Confidence            557889999999998644 3456899984311  1                 000000    012358889999999999


Q ss_pred             EEEEeec
Q psy7616          76 YQCTATN   82 (147)
Q Consensus        76 y~C~~~~   82 (147)
                      |.|....
T Consensus        89 YyCa~~~   95 (113)
T d1nfdb1          89 YFCASSL   95 (113)
T ss_dssp             ECEEEES
T ss_pred             EEEEeec
Confidence            9997643

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.57  E-value=0.00037  Score=36.99  Aligned_cols=64  Identities=17%  Similarity=0.277  Sum_probs=42.9

Q ss_pred             ceEEeeCCeEEEEEeecCCC-CCceEEEecC--CCCC-------CC----c-e--e---eeccceEEEeecCCCCeEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNP-VPSIIWSKKD--SSLP-------SG----E-K--S---LEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~-~~~v~w~~~~--~~~~-------~~----~-~--~---~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      .+.+.+|++++|.|...+.. ...+.|++..  ..+.       ..    . .  .   .....|.|.++...|+|.|.|
T Consensus         7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~YyC   86 (112)
T d1kgcd1           7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAVYYC   86 (112)
T ss_dssp             EEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEEEEE
T ss_pred             EEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeecccccceeEee
Confidence            56788999999999876544 3458999832  2211       00    0 0  0   122358899999999999999


Q ss_pred             Eeec
Q psy7616          79 TATN   82 (147)
Q Consensus        79 ~~~~   82 (147)
                      .+..
T Consensus        87 a~~~   90 (112)
T d1kgcd1          87 ILPL   90 (112)
T ss_dssp             ECCC
T ss_pred             eEec
Confidence            7643

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.56  E-value=0.00058  Score=36.21  Aligned_cols=63  Identities=21%  Similarity=0.434  Sum_probs=42.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC-------CCC---------ce----eeeccceEEEeecCCCCeEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL-------PSG---------EK----SLEGFSITLEKVDRHQAGVY   76 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~-------~~~---------~~----~~~~~~l~~~~~~~~~~g~y   76 (147)
                      .+.+.+|+.++|.|.........+.|++..  ..+       ...         ..    ......+.|.....+|++.|
T Consensus        10 ~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~~~dsa~Y   89 (112)
T d1fo0b_          10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVANMSQGRTL   89 (112)
T ss_dssp             EEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEESCCSCEEE
T ss_pred             eEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCCccCCccE
Confidence            446778999999998766555678999853  211       000         00    11234688888999999999


Q ss_pred             EEEee
Q psy7616          77 QCTAT   81 (147)
Q Consensus        77 ~C~~~   81 (147)
                      .|...
T Consensus        90 ~Ca~~   94 (112)
T d1fo0b_          90 YCTCS   94 (112)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99754

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.56  E-value=0.00013  Score=39.10  Aligned_cols=64  Identities=11%  Similarity=0.211  Sum_probs=41.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCC---ceEEEecCCC--C-------C-C-------Cce-----eeeccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVP---SIIWSKKDSS--L-------P-S-------GEK-----SLEGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~---~v~w~~~~~~--~-------~-~-------~~~-----~~~~~~l~~~~~~~~~~   73 (147)
                      .+.+..|+.+.|.|........   .+.|++....  +       . .       ...     ......|.|.++..+|+
T Consensus         8 ~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (117)
T d1dqta_           8 VVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAVDT   87 (117)
T ss_dssp             EEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccccC
Confidence            4567788999999996543322   3789984311  0       0 0       000     01233689999999999


Q ss_pred             eEEEEEeec
Q psy7616          74 GVYQCTATN   82 (147)
Q Consensus        74 g~y~C~~~~   82 (147)
                      |.|.|.+..
T Consensus        88 a~YyCa~~~   96 (117)
T d1dqta_          88 GLYLCKVEL   96 (117)
T ss_dssp             EEEEEEEEE
T ss_pred             EeEEEEEec
Confidence            999998753

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.55  E-value=0.0013  Score=35.50  Aligned_cols=29  Identities=31%  Similarity=0.484  Sum_probs=22.3

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEec
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKK   47 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~   47 (147)
                      .+...+|+.++|.|.+.+..  ...+.|++.
T Consensus        10 s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ   40 (123)
T d1hxmb1          10 SSTKTLSKTARLECVVSGITISATSVYWYRE   40 (123)
T ss_dssp             EEEEETTCCEEEEEEEESSCTTTSCEEEEEE
T ss_pred             eEEeCCCCCEEEEEEEcCCCcccCeEEEEEE
Confidence            45677899999999987643  345899985

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.53  E-value=0.00023  Score=37.78  Aligned_cols=64  Identities=13%  Similarity=0.273  Sum_probs=43.1

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC-------------CCce----eeeccceEEEeecCCCCeEEE
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP-------------SGEK----SLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~-------------~~~~----~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      .+.+.+|+.++|.|...+..  ...+.|++..  ..+.             ....    ......|.|.+++.+|++.|.
T Consensus         9 s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~Yy   88 (111)
T d1rzfl1           9 SVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEADYY   88 (111)
T ss_dssp             EEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSEEE
T ss_pred             ceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcceE
Confidence            56888999999999875433  3458999742  1110             0000    112346999999999999999


Q ss_pred             EEeec
Q psy7616          78 CTATN   82 (147)
Q Consensus        78 C~~~~   82 (147)
                      |....
T Consensus        89 CA~~~   93 (111)
T d1rzfl1          89 CGTWD   93 (111)
T ss_dssp             EEEEE
T ss_pred             EeecC
Confidence            97654

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.53  E-value=0.00016  Score=37.65  Aligned_cols=75  Identities=19%  Similarity=0.266  Sum_probs=44.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCcee-----eeccceE---EEeecCCCCeEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEKS-----LEGFSIT---LEKVDRHQAGVY   76 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~~-----~~~~~l~---~~~~~~~~~g~y   76 (147)
                      .+|.+.+.+..   ....|+..+|.|.+.+. |. ..+.|.++|..+......     ...+...   .-.+...+...|
T Consensus         4 ~~P~V~v~~~~---~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~y   80 (99)
T d1uvqa1           4 EVPEVTVFSKS---PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIY   80 (99)
T ss_dssp             CCCEEEEEESS---CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCE
T ss_pred             cCCEEEEEcCC---cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEE
Confidence            36666654433   24567788999999885 33 359999998766432111     1111111   112334455679


Q ss_pred             EEEeecCC
Q psy7616          77 QCTATNGV   84 (147)
Q Consensus        77 ~C~~~~~~   84 (147)
                      .|.+.+..
T Consensus        81 tC~V~H~s   88 (99)
T d1uvqa1          81 DCKVEHWG   88 (99)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998853

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.53  E-value=0.00019  Score=38.70  Aligned_cols=64  Identities=19%  Similarity=0.336  Sum_probs=43.6

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEec--CCCC--------------CCCceee-----eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKK--DSSL--------------PSGEKSL-----EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~--~~~~--------------~~~~~~~-----~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|++++|.|...+..  ...+.|++.  ++.+              +......     ....|.|.++..+|+|.
T Consensus        10 sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~~~Dsa~   89 (120)
T d1hxma1          10 TVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPSERDEGS   89 (120)
T ss_dssp             EEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCCGGGCEE
T ss_pred             CEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceecccccccccCCce
Confidence            56888999999999986543  345899973  2211              0111111     22468999999999999


Q ss_pred             EEEEeec
Q psy7616          76 YQCTATN   82 (147)
Q Consensus        76 y~C~~~~   82 (147)
                      |.|....
T Consensus        90 YyCA~~~   96 (120)
T d1hxma1          90 YYCACDT   96 (120)
T ss_dssp             EEEEEEC
T ss_pred             eecCccc
Confidence            9997654

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.50  E-value=0.00017  Score=37.35  Aligned_cols=75  Identities=20%  Similarity=0.343  Sum_probs=39.5

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCC--CceEEEecCCCCCCCcee-----eeccce---EEEeecCCCCeEE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPV--PSIIWSKKDSSLPSGEKS-----LEGFSI---TLEKVDRHQAGVY   76 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~~-----~~~~~l---~~~~~~~~~~g~y   76 (147)
                      ++|.+.+.+..   ....++..+|.|.+.+..+  ..+.|.+++..+......     ...+..   ..-.+...+...|
T Consensus         1 V~P~V~v~p~~---~~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~y   77 (97)
T d1uvqb1           1 VEPTVTISPSR---TEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVY   77 (97)
T ss_dssp             BCCEEEEEEC-----------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCE
T ss_pred             CCCEEEEecCC---cccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEE
Confidence            35777665543   2345667789999887533  469999988654322110     111111   1123345556789


Q ss_pred             EEEeecCC
Q psy7616          77 QCTATNGV   84 (147)
Q Consensus        77 ~C~~~~~~   84 (147)
                      .|.+.+..
T Consensus        78 tC~V~H~s   85 (97)
T d1uvqb1          78 TCHVEHPS   85 (97)
T ss_dssp             EEEEECTT
T ss_pred             EEEEEeCC
Confidence            99998854

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=0.00034  Score=37.53  Aligned_cols=64  Identities=13%  Similarity=0.247  Sum_probs=41.9

Q ss_pred             ceEEeeCCeEEEEEeecCCCCC---ceEEEecCCCCCC-----------------Cc-----eeeeccceEEEeecCCCC
Q psy7616          19 QLTVRKGGTITLECKASGNPVP---SIIWSKKDSSLPS-----------------GE-----KSLEGFSITLEKVDRHQA   73 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~---~v~w~~~~~~~~~-----------------~~-----~~~~~~~l~~~~~~~~~~   73 (147)
                      .+.+..|+.++|.|........   .+.|++....-..                 ..     .......|.|.+++.+|+
T Consensus         8 ~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   87 (118)
T d1i8lc_           8 VVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMDT   87 (118)
T ss_dssp             EEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGGC
T ss_pred             EEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCCC
Confidence            4466788899999997543333   4889985321100                 00     011233699999999999


Q ss_pred             eEEEEEeec
Q psy7616          74 GVYQCTATN   82 (147)
Q Consensus        74 g~y~C~~~~   82 (147)
                      |.|.|.+..
T Consensus        88 a~YyCa~~~   96 (118)
T d1i8lc_          88 GLYICKVEL   96 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEeEec
Confidence            999997653

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=4.5e-05  Score=40.42  Aligned_cols=77  Identities=17%  Similarity=0.315  Sum_probs=45.2

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCcee---------------eeccceEEEeec
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEKS---------------LEGFSITLEKVD   69 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~~---------------~~~~~l~~~~~~   69 (147)
                      .+|.+.+.+++. ..+..++.+.|.|.+.+. |. ..|.|.+++..+......               .-.+.|.+..-.
T Consensus         3 ~~P~V~~~~p~~-~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~   81 (108)
T d1ow0a2           3 FRPEVHLLPPPS-EELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAED   81 (108)
T ss_dssp             CCCEEEEECCCT-TTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHH
T ss_pred             CCCEEEEECCCH-HHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHH
Confidence            467776554332 134567899999998774 33 369999988766432110               111233343332


Q ss_pred             CCCCeEEEEEeecCC
Q psy7616          70 RHQAGVYQCTATNGV   84 (147)
Q Consensus        70 ~~~~g~y~C~~~~~~   84 (147)
                      ......|.|.+.+..
T Consensus        82 w~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          82 WKKGDTFSCMVGHEA   96 (108)
T ss_dssp             HHHTCCEEEEEECTT
T ss_pred             hCCCCEEEEEEEeCC
Confidence            223457999998754

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.43  E-value=0.00029  Score=37.43  Aligned_cols=63  Identities=27%  Similarity=0.506  Sum_probs=42.1

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecCC--CCC-------C----------Cce----eeeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKDS--SLP-------S----------GEK----SLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~~--~~~-------~----------~~~----~~~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+.+|+.++|.|.... ....+.|++...  .+.       .          ...    ......|.|..+..+|++.
T Consensus         7 ~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   85 (112)
T d2cdeb1           7 YLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPSHTSQ   85 (112)
T ss_dssp             EEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTTTCSE
T ss_pred             EEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccccccc
Confidence            457889999999998653 345689998431  110       0          000    0123358888999999999


Q ss_pred             EEEEeec
Q psy7616          76 YQCTATN   82 (147)
Q Consensus        76 y~C~~~~   82 (147)
                      |.|-+..
T Consensus        86 YyCA~~~   92 (112)
T d2cdeb1          86 YLCASSE   92 (112)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEec
Confidence            9997654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.42  E-value=1.5e-05  Score=41.48  Aligned_cols=63  Identities=17%  Similarity=0.440  Sum_probs=41.7

Q ss_pred             eEEeeCCeEEEEEeecCCCCCceEEEec--CCCCC-------------CCc-e--e---eeccceEEEeecCCCCeEEEE
Q psy7616          20 LTVRKGGTITLECKASGNPVPSIIWSKK--DSSLP-------------SGE-K--S---LEGFSITLEKVDRHQAGVYQC   78 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~~-------------~~~-~--~---~~~~~l~~~~~~~~~~g~y~C   78 (147)
                      +.+.+|+.++|.|.... ....+.|++.  +..+.             ... .  .   .....|.|.+++.+|+|.|.|
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~YyC   81 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYFC   81 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCEE
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEeE
Confidence            46778999999998654 3456899972  22110             000 0  0   112368999999999999999


Q ss_pred             EeecC
Q psy7616          79 TATNG   83 (147)
Q Consensus        79 ~~~~~   83 (147)
                      -+...
T Consensus        82 A~~~~   86 (96)
T d1ymmd1          82 ATDTT   86 (96)
T ss_dssp             EEEET
T ss_pred             eEecC
Confidence            76543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.41  E-value=0.00011  Score=39.03  Aligned_cols=37  Identities=14%  Similarity=0.168  Sum_probs=25.8

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCC--cCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDP--VTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~--~~~~~~l~V  146 (147)
                      ..+|.|.+++.+|+|.|.|.+...-+..  .....+|+|
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~ltV  116 (118)
T d1qfoa_          78 VCNLLLKDLKPEDSGTYNFRFEISDSNRWLDVKGTTVTV  116 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEECC-CCEEECSSCEEEEE
T ss_pred             EEEEEECCCChhHCEEEEEEEEeCCCCeEEcCCCEEEEE
Confidence            3469999999999999999997654332  123455555

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=5.8e-05  Score=39.74  Aligned_cols=78  Identities=22%  Similarity=0.293  Sum_probs=43.5

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC-ceEEEecCCCCCCCcee----------eeccceEEEeecCCCCe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP-SIIWSKKDSSLPSGEKS----------LEGFSITLEKVDRHQAG   74 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~~~~----------~~~~~l~~~~~~~~~~g   74 (147)
                      .||.+.+.+.+.......+..+.|.|.+.+. |.. .|.|.+++..+......          ...+.|.+..-......
T Consensus         3 ~pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~   82 (104)
T d1o0va1           3 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDR   82 (104)
T ss_dssp             CCCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTC
T ss_pred             CCCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCC
Confidence            3666654322211112345578899998874 443 59999998776532211          11223444433323345


Q ss_pred             EEEEEeecCC
Q psy7616          75 VYQCTATNGV   84 (147)
Q Consensus        75 ~y~C~~~~~~   84 (147)
                      .|.|.+.+..
T Consensus        83 ~ytC~V~H~~   92 (104)
T d1o0va1          83 TYTCQVTYQG   92 (104)
T ss_dssp             CEEEEEEETT
T ss_pred             EEEEEEEECC
Confidence            6999998863

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.39  E-value=0.0005  Score=36.45  Aligned_cols=62  Identities=26%  Similarity=0.537  Sum_probs=41.8

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC-----------------CCCce----eeeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL-----------------PSGEK----SLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~-----------------~~~~~----~~~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+..|+.++|.|.... ....+.|++..  ..+                 .....    ......|.|.++..+|++.
T Consensus         8 ~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsav   86 (112)
T d2bnub1           8 FQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAPSQTSV   86 (112)
T ss_dssp             EEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCGGGCEE
T ss_pred             eEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCHHHCEE
Confidence            457889999999998643 44569999832  111                 00000    1123369999999999999


Q ss_pred             EEEEee
Q psy7616          76 YQCTAT   81 (147)
Q Consensus        76 y~C~~~   81 (147)
                      |.|...
T Consensus        87 YyCA~~   92 (112)
T d2bnub1          87 YFCASS   92 (112)
T ss_dssp             EEEEEE
T ss_pred             EEEeec
Confidence            999764

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.38  E-value=0.00028  Score=37.53  Aligned_cols=63  Identities=17%  Similarity=0.398  Sum_probs=42.5

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEec--CCCCC----------------CCce-e-e---eccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKK--DSSLP----------------SGEK-S-L---EGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~--~~~~~----------------~~~~-~-~---~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+.+|+.++|.|...+ ....+.|++.  +..+.                .... . .   ....|.|.++..+|++.
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   86 (113)
T d2ntsp1           8 YLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELGDSAL   86 (113)
T ss_dssp             EEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGGGCEE
T ss_pred             eEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCccccee
Confidence            457889999999998654 3457899983  22110                0000 0 0   12358999999999999


Q ss_pred             EEEEeec
Q psy7616          76 YQCTATN   82 (147)
Q Consensus        76 y~C~~~~   82 (147)
                      |.|.+..
T Consensus        87 YyCA~~~   93 (113)
T d2ntsp1          87 YLCASSL   93 (113)
T ss_dssp             EEEEEES
T ss_pred             eeeeeeC
Confidence            9997654

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.37  E-value=0.00073  Score=34.26  Aligned_cols=69  Identities=17%  Similarity=0.250  Sum_probs=41.0

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCC--CceEEEecCCCCCCCcee-----e------eccceEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPV--PSIIWSKKDSSLPSGEKS-----L------EGFSITLEKVDRHQA   73 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~~-----~------~~~~l~~~~~~~~~~   73 (147)
                      .||.+.+..     ....++.+.|.|.+.+..+  ..+.|.+++..+......     .      ..+.|.+   ...+.
T Consensus         2 ~pP~v~v~~-----~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v---~~~~~   73 (89)
T d2mhaa1           2 DSPKAHVTH-----HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVV---PLGKE   73 (89)
T ss_dssp             BCCEEEECC-----EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEE---ESSTT
T ss_pred             CCCEeEEEc-----cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEe---cCcCC
Confidence            367666543     2235678999999988643  358999998765432211     1      1112333   23344


Q ss_pred             eEEEEEeecC
Q psy7616          74 GVYQCTATNG   83 (147)
Q Consensus        74 g~y~C~~~~~   83 (147)
                      ..|.|.+.+.
T Consensus        74 ~~ytC~V~H~   83 (89)
T d2mhaa1          74 QYYTCHVYHQ   83 (89)
T ss_dssp             TTCEEEEECS
T ss_pred             CEEEEEEEEC
Confidence            4699998875

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=0.0008  Score=34.29  Aligned_cols=70  Identities=23%  Similarity=0.306  Sum_probs=42.0

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCcee---------eeccceEEEeecCCCCeE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEKS---------LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~~---------~~~~~l~~~~~~~~~~g~   75 (147)
                      .||.+.+...     ...+..++|.|.+.|. |. ..+.|.+++.........         ...+.|.+   ...+...
T Consensus         2 ~PP~V~v~~~-----~~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v---~~~~~~~   73 (91)
T d3frua1           2 EPPSMRLKAR-----PGNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEV---KRGDEHH   73 (91)
T ss_dssp             BCCEEEEEEE-----ECSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEE---ETTCGGG
T ss_pred             CCCEEEEEec-----CCCCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEE---CCCCCCE
Confidence            3677665322     1245678999999885 43 369999998766432211         11112333   3345567


Q ss_pred             EEEEeecCC
Q psy7616          76 YQCTATNGV   84 (147)
Q Consensus        76 y~C~~~~~~   84 (147)
                      |.|++.+..
T Consensus        74 ytC~V~H~s   82 (91)
T d3frua1          74 YQCQVEHEG   82 (91)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999998853

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00012  Score=38.30  Aligned_cols=76  Identities=17%  Similarity=0.324  Sum_probs=44.3

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce-----------eeeccceEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK-----------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-----------~~~~~~l~~~~~~~~~~   73 (147)
                      .+|.+.+.++..  ....++.++|.|.+.+. |. ..|.|.+++..+.....           ..-.+.|.+..-.....
T Consensus         4 ~~P~V~l~~ps~--~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~   81 (102)
T d1q0xl2           4 SSPTVTLFPPSS--EELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERH   81 (102)
T ss_dssp             BCCEEEEECCCH--HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTC
T ss_pred             CCCEEEEECCCH--HHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCC
Confidence            356666655432  22245678999998775 32 46999998865432211           11122344444433445


Q ss_pred             eEEEEEeecCC
Q psy7616          74 GVYQCTATNGV   84 (147)
Q Consensus        74 g~y~C~~~~~~   84 (147)
                      ..|.|.+.+..
T Consensus        82 ~~ytC~V~H~~   92 (102)
T d1q0xl2          82 SSYSCQVTHEG   92 (102)
T ss_dssp             CEEEEEEEETT
T ss_pred             CEEEEEEEECC
Confidence            67999998753

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.31  E-value=9.5e-05  Score=36.86  Aligned_cols=37  Identities=16%  Similarity=0.321  Sum_probs=31.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCCcCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V  146 (147)
                      -+.|.+..+...|.|.|+|.|.-..|...+.+++|.|
T Consensus        67 ~FvLhF~pvl~sDnGsYrCSanf~s~vieSHSvti~V  103 (104)
T d1xaua_          67 VFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             EEEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEeeeeeecCCCceEEecCCChhheecceEEEEe
Confidence            3456778999999999999999888877788888876

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0002  Score=38.08  Aligned_cols=24  Identities=17%  Similarity=0.480  Sum_probs=19.9

Q ss_pred             CceEEeecCCCCCeEEEEEeecCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      .+|+|.+++.+|+|.|.|.+....
T Consensus        76 ~~Lti~~l~~~Dsg~Y~Cav~~~~   99 (113)
T d1smoa_          76 LRVRMVNLQVEDSGLYQCVIYQPP   99 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCTT
T ss_pred             EEEEEccCCcccCceEEEEEECCC
Confidence            358889999999999999885543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00014  Score=39.10  Aligned_cols=37  Identities=14%  Similarity=0.176  Sum_probs=26.2

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCCCC--cCeeeEEEE
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVGDP--VTVDMTLEV  146 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g~~--~~~~~~l~V  146 (147)
                      ..+|.|.+++.+|+|.|.|.+...-...  ....++|.|
T Consensus        82 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V  120 (121)
T d2g5ra1          82 NCTLSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNV  120 (121)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEECTTSCEEEEE
T ss_pred             EEEEEECCCChHHCEEEEEEEEeCCcceeeeCCCEEEEE
Confidence            4579999999999999999996542211  134566655

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.00098  Score=34.22  Aligned_cols=72  Identities=15%  Similarity=0.218  Sum_probs=40.9

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCC--CceEEEecCCCCCCCcee-----eeccc---eEEEeecCCCCeEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPV--PSIIWSKKDSSLPSGEKS-----LEGFS---ITLEKVDRHQAGVYQ   77 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~~-----~~~~~---l~~~~~~~~~~g~y~   77 (147)
                      ||.+.+...     -..++.++|.|.+.+..+  ..|.|.+++..+......     .....   ...-.+...+...|.
T Consensus         3 PP~v~v~~~-----~~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~yt   77 (95)
T d1k5na1           3 PPKTHVTHH-----PISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYT   77 (95)
T ss_dssp             CCEEEEEEE-----EEETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEE
T ss_pred             CCccEEEec-----cCCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEE
Confidence            566655422     224568999999988633  358999998765432111     01111   111123344556799


Q ss_pred             EEeecCC
Q psy7616          78 CTATNGV   84 (147)
Q Consensus        78 C~~~~~~   84 (147)
                      |.+.+..
T Consensus        78 C~V~H~~   84 (95)
T d1k5na1          78 CHVQHEG   84 (95)
T ss_dssp             EEEECTT
T ss_pred             EEEEECc
Confidence            9998853

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.22  E-value=0.0011  Score=33.95  Aligned_cols=72  Identities=22%  Similarity=0.433  Sum_probs=41.6

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce-----e-eeccceE---EEeecCCCCeE
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK-----S-LEGFSIT---LEKVDRHQAGV   75 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~-----~-~~~~~l~---~~~~~~~~~g~   75 (147)
                      +||.+.+...+     ..++.++|.|.+.+. |. ..+.|.+++..+.....     . .......   .-.+...+...
T Consensus         2 vpP~V~v~~~~-----~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~   76 (94)
T d1hyrc1           2 VPPMVNVTRSE-----ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQR   76 (94)
T ss_dssp             BCCEEEEEECC-----CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGG
T ss_pred             cCCEEEEEecC-----CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCE
Confidence            57777664432     235678999999875 33 36999999876643211     0 1111111   11233445557


Q ss_pred             EEEEeecC
Q psy7616          76 YQCTATNG   83 (147)
Q Consensus        76 y~C~~~~~   83 (147)
                      |.|.+.+.
T Consensus        77 ytC~V~H~   84 (94)
T d1hyrc1          77 FTCYMEHS   84 (94)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEEC
Confidence            99999875

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.20  E-value=0.00059  Score=36.22  Aligned_cols=63  Identities=30%  Similarity=0.584  Sum_probs=41.7

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC-----------------CCCcee----eeccceEEEeecCCCCeE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL-----------------PSGEKS----LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~-----------------~~~~~~----~~~~~l~~~~~~~~~~g~   75 (147)
                      .+.+.+|+++.|.|.... ....+.|++..  ..+                 ......    .....|.|.++..+|+|.
T Consensus         9 ~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   87 (113)
T d1j8he1           9 YLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESASTNQTSM   87 (113)
T ss_dssp             EEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCCGGGCEE
T ss_pred             EEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCccCCccc
Confidence            457889999999998643 34568899832  111                 000000    012358889999999999


Q ss_pred             EEEEeec
Q psy7616          76 YQCTATN   82 (147)
Q Consensus        76 y~C~~~~   82 (147)
                      |.|.+..
T Consensus        88 YyCa~~~   94 (113)
T d1j8he1          88 YLCASSS   94 (113)
T ss_dssp             EEEEEEC
T ss_pred             EEeeEcc
Confidence            9998754

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.17  E-value=0.0002  Score=37.82  Aligned_cols=64  Identities=16%  Similarity=0.355  Sum_probs=42.6

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceEEEecC--CCC--------------CCCcee---eeccceEEEeecCCCCeEEEEE
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSIIWSKKD--SSL--------------PSGEKS---LEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~w~~~~--~~~--------------~~~~~~---~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .+.+.+|++++|.|.........+.|++-.  ..+              +.....   .....|.|.+++.+|++.|.|.
T Consensus         8 s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~YyCA   87 (108)
T d1nfde1           8 SASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYYCL   87 (108)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEEEE
T ss_pred             eeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEEEE
Confidence            567889999999998754444568899832  111              000000   1233688899999999999997


Q ss_pred             eec
Q psy7616          80 ATN   82 (147)
Q Consensus        80 ~~~   82 (147)
                      ...
T Consensus        88 ~~~   90 (108)
T d1nfde1          88 SSY   90 (108)
T ss_dssp             EEE
T ss_pred             eec
Confidence            653

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=6e-05  Score=39.52  Aligned_cols=76  Identities=21%  Similarity=0.347  Sum_probs=43.7

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce----e-ee------ccceEEEeecCCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK----S-LE------GFSITLEKVDRHQA   73 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~----~-~~------~~~l~~~~~~~~~~   73 (147)
                      .+|.+.+.++..  ....++.+.|.|.+.+. |. ..|.|.+++..+.....    . ..      .+.|.+........
T Consensus         4 ~~P~V~~~~ps~--~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~   81 (102)
T d1rzfl2           4 AAPSVTLFPPSS--EELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSH   81 (102)
T ss_dssp             BCCEEEEECCCH--HHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHS
T ss_pred             CCCEEEEECCCH--HHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCC
Confidence            467776655432  22346778999998874 32 36999999876643321    1 11      12233332221223


Q ss_pred             eEEEEEeecCC
Q psy7616          74 GVYQCTATNGV   84 (147)
Q Consensus        74 g~y~C~~~~~~   84 (147)
                      ..|.|.+.+..
T Consensus        82 ~~ytC~V~H~~   92 (102)
T d1rzfl2          82 RSYSCQVTHEG   92 (102)
T ss_dssp             SCEEEEEEETT
T ss_pred             CEEEEEEEECC
Confidence            46999998853

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.16  E-value=0.00097  Score=35.82  Aligned_cols=64  Identities=14%  Similarity=0.334  Sum_probs=41.5

Q ss_pred             ceEEeeCCeEEEEEeecCCC--CCceEEEecC--CCCC-------CC----------ce-ee-----eccceEEEeecCC
Q psy7616          19 QLTVRKGGTITLECKASGNP--VPSIIWSKKD--SSLP-------SG----------EK-SL-----EGFSITLEKVDRH   71 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~~-------~~----------~~-~~-----~~~~l~~~~~~~~   71 (147)
                      .+....|+.++|.|...+..  ...+.|++..  ..+.       ..          .. ..     ....|.|.++..+
T Consensus        10 sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l~~~   89 (120)
T d1ypzf1          10 SISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSLEEE   89 (120)
T ss_dssp             EEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSCCGG
T ss_pred             EEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccccccccc
Confidence            45677899999999865432  3458899832  1110       00          00 00     1225899999999


Q ss_pred             CCeEEEEEeec
Q psy7616          72 QAGVYQCTATN   82 (147)
Q Consensus        72 ~~g~y~C~~~~   82 (147)
                      |++.|.|....
T Consensus        90 Dsa~YyCA~~~  100 (120)
T d1ypzf1          90 DEAIYYCSYGE  100 (120)
T ss_dssp             GCSEEEEEECC
T ss_pred             cceeEEEEEcC
Confidence            99999997654

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.15  E-value=8.9e-05  Score=40.46  Aligned_cols=76  Identities=14%  Similarity=0.211  Sum_probs=45.1

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCC--CceEEEecCCCCCCCce----------------eeeccceEEEee
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPV--PSIIWSKKDSSLPSGEK----------------SLEGFSITLEKV   68 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~----------------~~~~~~l~~~~~   68 (147)
                      +||.+.+.+++. ..+..+..++|.|.+.+..+  ..|.|.+++..+.....                ..-.+.|.+...
T Consensus         3 ~PP~V~l~~Ps~-~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~   81 (127)
T d1ogae2           3 FPPEVAVFEPSE-AEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSAT   81 (127)
T ss_dssp             BCCEEEEECCCH-HHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHH
T ss_pred             cCCEEEEECCCH-HHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHH
Confidence            578777655432 13345778999999887532  35999998865532111                111234555444


Q ss_pred             cCCCCe-EEEEEeecC
Q psy7616          69 DRHQAG-VYQCTATNG   83 (147)
Q Consensus        69 ~~~~~g-~y~C~~~~~   83 (147)
                      .-.+.| .|.|.+.+.
T Consensus        82 ~W~~~g~~ytC~V~H~   97 (127)
T d1ogae2          82 FWQNPRNHFRCQVQFY   97 (127)
T ss_dssp             HHTCTTCEEEEEEEEC
T ss_pred             HhCCCCCEEEEEEEEC
Confidence            433434 699999874

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.12  E-value=0.001  Score=33.71  Aligned_cols=56  Identities=20%  Similarity=0.464  Sum_probs=38.9

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeec-CCCCeEEEEEeec
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVD-RHQAGVYQCTATN   82 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~g~y~C~~~~   82 (147)
                      +-..|..++|.|+..+  ...+.|.+++..++..    ....|.+...+ .+++|.|.|....
T Consensus        10 VSISGTtV~LTCP~~~--~~~I~Wkkn~~~i~g~----~~~~L~L~~FSE~e~SGyY~C~~~~   66 (100)
T d1jbja2          10 VSISGTSVELTCPLDS--DENLKWEKNGQELPQK----HDKHLVLQDFSEVEDSGYYVCYTPA   66 (100)
T ss_dssp             EEEETTEEEEECSSCC--CTTCEEEETTEEECSC----CCSEEEEESCCTTTSCEEEEEECSS
T ss_pred             EEEeCCEEEEECCCCC--CCceEEeeccccCCCC----CCcEEEEccccccccCcceEEecCC
Confidence            5568999999998654  2469999988665432    22356666654 4799999996433

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.11  E-value=0.00021  Score=37.35  Aligned_cols=75  Identities=11%  Similarity=0.169  Sum_probs=42.3

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCC--CCceEEEecCCCCCCCce----e------eeccceEEEeecCCCCeE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNP--VPSIIWSKKDSSLPSGEK----S------LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~--~~~v~w~~~~~~~~~~~~----~------~~~~~l~~~~~~~~~~g~   75 (147)
                      .|.+.+.+++.  .....+.+.|.|.+.+..  ...|.|.+++........    .      ...+.|.+..........
T Consensus         4 ~P~V~i~~p~~--~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~   81 (102)
T d1i1ca2           4 GPQVYTMAPPK--EEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNT   81 (102)
T ss_dssp             CCEEEEECCCG--GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEECCCH--HHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCE
Confidence            35555444332  122356789999987753  246999999876532111    1      112234444433334456


Q ss_pred             EEEEeecCC
Q psy7616          76 YQCTATNGV   84 (147)
Q Consensus        76 y~C~~~~~~   84 (147)
                      |.|.+.+..
T Consensus        82 ytC~V~H~~   90 (102)
T d1i1ca2          82 FTCSVLHEG   90 (102)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999998853

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.10  E-value=0.00022  Score=36.88  Aligned_cols=71  Identities=18%  Similarity=0.342  Sum_probs=41.4

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CCC-ceEEEecCCCCCCCce----------eeeccceEEEeecCCCCe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PVP-SIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAG   74 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~~-~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g   74 (147)
                      ++|.+.+...+    ...++.++|.|.+.+. |.. .+.|.+++........          ....+.|.+.   ..+..
T Consensus         2 v~P~V~l~~~~----~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~   74 (96)
T d2h26a1           2 VKPEAWLSSGP----SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAA   74 (96)
T ss_dssp             BCCEEEEEEES----CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCT
T ss_pred             cCCEEEEEcCC----CCCCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCC
Confidence            46766554432    1245689999999875 444 6999998766532211          0111223333   33445


Q ss_pred             EEEEEeecCC
Q psy7616          75 VYQCTATNGV   84 (147)
Q Consensus        75 ~y~C~~~~~~   84 (147)
                      .|+|.+.+..
T Consensus        75 ~ytC~V~H~s   84 (96)
T d2h26a1          75 GLSCRVKHSS   84 (96)
T ss_dssp             TEEEEEEEGG
T ss_pred             EEEEEEEeCC
Confidence            7999998753

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.10  E-value=0.0019  Score=33.90  Aligned_cols=27  Identities=30%  Similarity=0.668  Sum_probs=21.8

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK   47 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~   47 (147)
                      .+++|+++.|.|.+.|...  ..+.|++.
T Consensus        11 ~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ   39 (109)
T d2ck0h1          11 LVQPRGSLKLSCAASGFTFNTDAMNWVRQ   39 (109)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             eECCCCCeEEEEEECCCccccccccccee
Confidence            6789999999999887543  35889874

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00021  Score=37.34  Aligned_cols=75  Identities=17%  Similarity=0.340  Sum_probs=42.1

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce----------eeeccceEEEeecCCCCeE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~   75 (147)
                      .|.+...+++.  ....++.+.|.|.+.+. |. ..|.|.+++........          ....+.|.+..-.......
T Consensus         4 ~P~V~i~~ps~--~~~~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~   81 (102)
T d1l6xa2           4 EPQVYTLPPSR--DELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV   81 (102)
T ss_dssp             CCEEEEECCCG--GGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEECcCH--HHhcCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCE
Confidence            45554444332  11246788999998874 33 46999998865432110          1112234444333233456


Q ss_pred             EEEEeecCC
Q psy7616          76 YQCTATNGV   84 (147)
Q Consensus        76 y~C~~~~~~   84 (147)
                      |.|.+.+..
T Consensus        82 ytC~V~H~~   90 (102)
T d1l6xa2          82 FSCSVMHEA   90 (102)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999998854

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.10  E-value=0.0002  Score=37.43  Aligned_cols=75  Identities=15%  Similarity=0.258  Sum_probs=42.1

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-C-CCceEEEecCCCCCCCce----------eeeccceEEEeecCCCCeE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-P-VPSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGV   75 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~   75 (147)
                      +|.+.+.+++.  ....++.+.|.|.+.+. | ...|.|.+++........          ..-.+.|.+..-.-.....
T Consensus         4 ~P~V~l~~ps~--~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~   81 (102)
T d1igtb4           4 APQVYVLPPPE--EEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNS   81 (102)
T ss_dssp             CCEEEEECCCG--GGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCC
T ss_pred             CCEEEEECCCH--HHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCE
Confidence            45565544432  12246789999998774 3 346999998865422111          1112234443333223456


Q ss_pred             EEEEeecCC
Q psy7616          76 YQCTATNGV   84 (147)
Q Consensus        76 y~C~~~~~~   84 (147)
                      |.|.+.+..
T Consensus        82 ytC~V~H~~   90 (102)
T d1igtb4          82 YSCSVVHEG   90 (102)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEeCC
Confidence            999998854

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.00031  Score=37.00  Aligned_cols=75  Identities=23%  Similarity=0.376  Sum_probs=44.3

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce------------eeeccceEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK------------SLEGFSITLEKVDRHQA   73 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~~   73 (147)
                      +|.+.+.++..  ....++.+.|.|.+.+. |. ..|.|.+++........            ..-.+.|.+..-.-...
T Consensus         5 ~P~V~l~~Ps~--~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~   82 (107)
T d1c5cl2           5 APSVFIFPPSD--EQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKH   82 (107)
T ss_dssp             CCEEEEECCCH--HHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTC
T ss_pred             CCEEEEECCCH--HHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCC
Confidence            56676655432  22346789999998774 33 46999998876543211            11122344444332334


Q ss_pred             eEEEEEeecCC
Q psy7616          74 GVYQCTATNGV   84 (147)
Q Consensus        74 g~y~C~~~~~~   84 (147)
                      ..|.|.+.+..
T Consensus        83 ~~ytC~V~H~~   93 (107)
T d1c5cl2          83 KVYACEVTHQG   93 (107)
T ss_dssp             CEEEEEEECTT
T ss_pred             CEEEEEEEECC
Confidence            57999998854

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.08  E-value=0.00048  Score=35.43  Aligned_cols=64  Identities=16%  Similarity=0.345  Sum_probs=45.0

Q ss_pred             ceEEeeCCeEEEEEeecCCCCCceE-EEecCCCC-CCCce--eeeccceEEEeecCCCCeEEEEEeecC
Q psy7616          19 QLTVRKGGTITLECKASGNPVPSII-WSKKDSSL-PSGEK--SLEGFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~~~~~v~-w~~~~~~~-~~~~~--~~~~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      .+.+.+|+++.+.|..+. |...+. |...+..+ +....  ......+.|+++...+.|.|.|.+...
T Consensus        14 ~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~p~g~~v~~Dpk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          14 IIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLIPDGKRIIWDSRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             EEEECTTSCEEECCCBSC-TTSCCEEEETTTEEECCCSSSEEEETTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEeCCCCEEEEccCCC-CCceeEEEeccCCccCCCCCEEEECCCCCEEEeCCCcccCeEEEEEEEEC
Confidence            457889999999999876 555544 44455443 22222  234556888999999999999999654

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00016  Score=38.12  Aligned_cols=76  Identities=20%  Similarity=0.335  Sum_probs=43.6

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce------------eeeccceEEEeecCCC
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK------------SLEGFSITLEKVDRHQ   72 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~------------~~~~~~l~~~~~~~~~   72 (147)
                      .+|.+.+.+++.  ....+..++|.|.+.+. |. ..|.|.+++..+.....            ..-.+.|.+..-....
T Consensus         4 ~~P~V~l~~ps~--~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~   81 (107)
T d1mjul2           4 AAPTVSIFPPSS--EQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYER   81 (107)
T ss_dssp             BCCEEEEECCCH--HHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHT
T ss_pred             cCCEEEEECCCH--HHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCC
Confidence            356666555432  12246678999998774 33 46999998866543211            1111234443333223


Q ss_pred             CeEEEEEeecCC
Q psy7616          73 AGVYQCTATNGV   84 (147)
Q Consensus        73 ~g~y~C~~~~~~   84 (147)
                      ...|.|.+.+..
T Consensus        82 g~~ytC~V~H~~   93 (107)
T d1mjul2          82 HNSYTCEATHKT   93 (107)
T ss_dssp             CCEEEEEEECTT
T ss_pred             CCEEEEEEEECC
Confidence            457999998854

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.01  E-value=0.00028  Score=36.80  Aligned_cols=61  Identities=10%  Similarity=0.239  Sum_probs=36.4

Q ss_pred             eCCeEEEEEeecCC-C-CCceEEEecCCCCCCCce----------eeeccceEEEeecCCCCeEEEEEeecCC
Q psy7616          24 KGGTITLECKASGN-P-VPSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        24 ~g~~~~l~C~~~~~-~-~~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      ..+.+.|.|.+.+. | ...|.|.+++........          ....+.|.+..-.......|.|.+.+..
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            45678999998874 3 346999998876532111          1112234443333233457999998853

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.99  E-value=0.00073  Score=35.51  Aligned_cols=75  Identities=15%  Similarity=0.088  Sum_probs=43.8

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCCCC--CceEEEecCCCCCCCce----------eeeccceEEEeecCCC-C
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGNPV--PSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQ-A   73 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~-~   73 (147)
                      .+|.+.+-+++. ..+..+..+.|.|.+.+..+  ..|.|.+++..+.....          ....+.|.+   ...+ .
T Consensus         7 ~~P~v~i~~Ps~-~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v---~~~~w~   82 (107)
T d1hxmb2           7 VSPKPTIFLPSI-AETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTV---PEKSLD   82 (107)
T ss_dssp             CSCBCCCCCCCG-GGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEE---CTGGGG
T ss_pred             CCCeEEEECCCH-HHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEE---ecccCC
Confidence            467766554432 13456778999999887533  25999998876643221          111223333   2333 2


Q ss_pred             eEEEEEeecCCC
Q psy7616          74 GVYQCTATNGVG   85 (147)
Q Consensus        74 g~y~C~~~~~~~   85 (147)
                      ..|.|.+.+...
T Consensus        83 ~~ytC~V~H~s~   94 (107)
T d1hxmb2          83 KEHRCIVRHENN   94 (107)
T ss_dssp             SCEEEEEEETTS
T ss_pred             CeEEEEEEECCC
Confidence            369999988543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00042  Score=37.11  Aligned_cols=85  Identities=24%  Similarity=0.351  Sum_probs=53.4

Q ss_pred             EEcCCCCceEEeeCCeEEEEEeecCCCC----CceEEEecCCCCCC----------------------Cc-ee------e
Q psy7616          12 RTSPSNGQLTVRKGGTITLECKASGNPV----PSIIWSKKDSSLPS----------------------GE-KS------L   58 (147)
Q Consensus        12 ~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~v~w~~~~~~~~~----------------------~~-~~------~   58 (147)
                      .+..+...+.+..|+++.|.|.....+.    ..+.|++.......                      ++ ..      .
T Consensus         6 ~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   85 (124)
T d1eaja_           6 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKS   85 (124)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGG
T ss_pred             EEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCC
Confidence            3333333567889999999999754322    34889873221100                      00 00      0


Q ss_pred             eccceEEEeecCCCCeEEEEEeecCCCCceEEeEEEEEe
Q psy7616          59 EGFSITLEKVDRHQAGVYQCTATNGVGDPVTVDMTLEVL   97 (147)
Q Consensus        59 ~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~~~~~~l~v~   97 (147)
                      ....|.|.+++..|+|.|.|.+.+..+.. ...+.|.|.
T Consensus        86 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~~~L~V~  123 (124)
T d1eaja_          86 GDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKIHLVVL  123 (124)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             CEEEEEEcccEEccCEEEEEEEEECCCeE-EeEEEEEEE
Confidence            12369999999999999999998765543 555666553

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.0025  Score=33.25  Aligned_cols=78  Identities=18%  Similarity=0.249  Sum_probs=40.0

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce----eee------ccceEEEeecC--CCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK----SLE------GFSITLEKVDR--HQA   73 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~----~~~------~~~l~~~~~~~--~~~   73 (147)
                      +|.+....+. .......+.+.|.|.+.+. |. ..|.|.+++........    ...      .+.|.+....-  ...
T Consensus         5 ~P~V~~l~p~-~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~   83 (105)
T d1dn0b2           5 APTLFPLVSC-ENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTD   83 (105)
T ss_dssp             CCEEEEEECC-------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CC
T ss_pred             CCeEEeECCC-ccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCC
Confidence            5555433222 1134456789999999874 33 46999998876432111    111      12233322221  112


Q ss_pred             eEEEEEeecCCCC
Q psy7616          74 GVYQCTATNGVGD   86 (147)
Q Consensus        74 g~y~C~~~~~~~~   86 (147)
                      ..|+|.+.+....
T Consensus        84 ~~ytC~V~H~~~~   96 (105)
T d1dn0b2          84 EHVVCKVQHPNGN   96 (105)
T ss_dssp             CEEEEEEECTTCC
T ss_pred             CEEEEEEEECCCC
Confidence            4799999987543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.94  E-value=0.00049  Score=36.63  Aligned_cols=24  Identities=13%  Similarity=0.315  Sum_probs=20.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        78 ~~~L~I~~~~~~Dsg~Y~Ca~~~~  101 (115)
T d2atpb1          78 RPFLSIMNVKPEDSDFYFCATVGS  101 (115)
T ss_dssp             SCEEEECSCCGGGCEEEEEEEECS
T ss_pred             eEEEeecccCCCCCcEEEEeEcCC
Confidence            346888999999999999988643

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.93  E-value=0.00057  Score=36.35  Aligned_cols=25  Identities=12%  Similarity=0.256  Sum_probs=21.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      ..+|.+.+++.+|+|.|.|.+....
T Consensus        71 ~~sL~i~~~~~~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          71 QSSLHITASQLSDSASYICVVSDRG   95 (114)
T ss_dssp             EEEEEECSCCGGGCSEEEEEEECSC
T ss_pred             ccccEEcccChhhCcccceeeecCC
Confidence            4568889999999999999998753

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.92  E-value=0.003  Score=33.49  Aligned_cols=61  Identities=20%  Similarity=0.472  Sum_probs=40.9

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCCC-------C----------Cce-ee-----eccceEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSLP-------S----------GEK-SL-----EGFSITLEKVDRHQA   73 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~~-------~----------~~~-~~-----~~~~l~~~~~~~~~~   73 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++.  +..+.       .          .+. ..     +...|.+.+++.+|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL~~eDt   90 (117)
T d1c5db1          11 LVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSLQTEDT   90 (117)
T ss_dssp             EECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeeccccccccCcc
Confidence            6789999999999987643  35889883  22210       0          000 00     112588889999999


Q ss_pred             eEEEEEee
Q psy7616          74 GVYQCTAT   81 (147)
Q Consensus        74 g~y~C~~~   81 (147)
                      +.|.|-..
T Consensus        91 AvYYCAr~   98 (117)
T d1c5db1          91 AIYFCTRE   98 (117)
T ss_dssp             EEEEEEEC
T ss_pred             eEEEEecc
Confidence            99999644

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.00031  Score=37.04  Aligned_cols=64  Identities=16%  Similarity=0.186  Sum_probs=46.3

Q ss_pred             EeeCCeEEEEEeecCCCCCceEEEecCCCCCC---------------------CceeeeccceEEEeecCCCCeEEEEEe
Q psy7616          22 VRKGGTITLECKASGNPVPSIIWSKKDSSLPS---------------------GEKSLEGFSITLEKVDRHQAGVYQCTA   80 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~---------------------~~~~~~~~~l~~~~~~~~~~g~y~C~~   80 (147)
                      +..|+++.|.|.........+.|+++......                     ......+.+|.|.+++.+|+|.|.|.+
T Consensus        11 v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ngSL~I~~v~~~D~G~Y~c~v   90 (107)
T d1l6za1          11 VAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDM   90 (107)
T ss_dssp             CCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTSCEEECSCCGGGCEEEEEEE
T ss_pred             ccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccccEEEcCCCchhCEEEEEEE
Confidence            56899999999854445667999986532110                     111234568999999999999999999


Q ss_pred             ecCCC
Q psy7616          81 TNGVG   85 (147)
Q Consensus        81 ~~~~~   85 (147)
                      .+..+
T Consensus        91 ~~~~~   95 (107)
T d1l6za1          91 TDENY   95 (107)
T ss_dssp             EETTE
T ss_pred             EECCC
Confidence            76543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=96.88  E-value=0.0025  Score=33.15  Aligned_cols=63  Identities=16%  Similarity=0.287  Sum_probs=37.3

Q ss_pred             EeeCCeEEEEEeecCCCC--CceEEEecCCCCCCCcee----eeccceEE---EeecCCCCeEEEEEeecCC
Q psy7616          22 VRKGGTITLECKASGNPV--PSIIWSKKDSSLPSGEKS----LEGFSITL---EKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~~----~~~~~l~~---~~~~~~~~g~y~C~~~~~~   84 (147)
                      +..|+..+|.|.+.+..+  ..+.|.+++..+......    ...+...+   -.+...+...|.|.+.+..
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCC
Confidence            345778899999988533  359999998765422111    11111111   1233445567999998863

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00085  Score=34.54  Aligned_cols=36  Identities=22%  Similarity=0.290  Sum_probs=26.9

Q ss_pred             CceEEeecCCCCCeEEEEEeecCC----CCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGV----GDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~----g~~~~~~~~l~V  146 (147)
                      ....|.+++.+|+|.|+|......    .+..+..+.|.|
T Consensus        56 a~F~l~~v~~~~~G~Y~C~y~~~~~p~~~S~~Sd~leL~V   95 (96)
T d1ucta2          56 ANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV   95 (96)
T ss_dssp             EEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             cEEEEeccccccCcEEEEEEEcCCCCCCccCCCCCEEEEE
Confidence            346678999999999999986543    244477788776

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.84  E-value=0.0094  Score=31.75  Aligned_cols=62  Identities=26%  Similarity=0.518  Sum_probs=40.4

Q ss_pred             EEeeCCeEEEEEeecCCC--CCceEEEec--CCCCC-------C-----------Cce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNP--VPSIIWSKK--DSSLP-------S-----------GEK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~--~~~v~w~~~--~~~~~-------~-----------~~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+..  ...+.|++.  +..+.       .           .+. ..     ....|.|.+++.+|
T Consensus        11 ~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~~eD   90 (119)
T d1qnzh_          11 LVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLTSDD   90 (119)
T ss_dssp             EECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEECGGG
T ss_pred             eECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccCccc
Confidence            678899999999987643  234788873  32210       0           000 00     11248889999999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      ++.|.|-...
T Consensus        91 sAvYYCA~~~  100 (119)
T d1qnzh_          91 SAVYYCAIHY  100 (119)
T ss_dssp             CEEEEEEECS
T ss_pred             eeEEEEEEec
Confidence            9999996543

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.80  E-value=0.0098  Score=31.65  Aligned_cols=27  Identities=30%  Similarity=0.645  Sum_probs=21.4

Q ss_pred             EEeeCCeEEEEEeecCCC--CCceEEEec
Q psy7616          21 TVRKGGTITLECKASGNP--VPSIIWSKK   47 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~--~~~v~w~~~   47 (147)
                      .+++|+.+.|.|.+.+..  ...+.|++.
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ   39 (120)
T d1dlfh_          11 LVQPGGSMKLSCATSGFTFSDAWMDWVRQ   39 (120)
T ss_dssp             EECTTCCEEEEEEEESSCTTTCEEEEEEE
T ss_pred             eECCCCCeEEEEEECCccCcCCceEeeee
Confidence            578899999999988754  345889874

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.80  E-value=0.007  Score=32.10  Aligned_cols=21  Identities=19%  Similarity=0.406  Sum_probs=18.4

Q ss_pred             ceEEEeecCCCCeEEEEEeec
Q psy7616          62 SITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        62 ~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      .|.|.++...|++.|.|.+..
T Consensus        78 ~L~I~~l~~~DsavYyCa~~~   98 (118)
T d1yjdc1          78 TFYLQNLYVNQTDIYFCKIEV   98 (118)
T ss_dssp             EEEEESCCGGGCEEEEEEEEE
T ss_pred             EEEECCCCcccCeEEEEEEec
Confidence            589999999999999997643

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.79  E-value=0.0045  Score=32.80  Aligned_cols=62  Identities=29%  Similarity=0.522  Sum_probs=40.9

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------CCC----------ce-ee-----eccceEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------PSG----------EK-SL-----EGFSITLEKVDRHQA   73 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~~~----------~~-~~-----~~~~l~~~~~~~~~~   73 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++.  ++.+       ...          +. ..     ....|.|.+++.+|.
T Consensus        11 lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L~~eDt   90 (116)
T d7fabh1          11 LVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSVTAADT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhccccccccccc
Confidence            6788999999999887543  34889873  2211       000          00 10     112488889999999


Q ss_pred             eEEEEEeec
Q psy7616          74 GVYQCTATN   82 (147)
Q Consensus        74 g~y~C~~~~   82 (147)
                      +.|.|-...
T Consensus        91 AvYyCAr~~   99 (116)
T d7fabh1          91 AVYYCARNL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             eEEEeeeec
Confidence            999997543

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.76  E-value=0.00082  Score=34.93  Aligned_cols=74  Identities=15%  Similarity=0.197  Sum_probs=41.7

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-C-CCceEEEecCCCCCCC--c------eeeeccceEEEeecCCCCeEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-P-VPSIIWSKKDSSLPSG--E------KSLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~w~~~~~~~~~~--~------~~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      +|.+...++..  ....++.++|.|.+.+. | ...|.|.+++......  .      .....+.|.+..-.. ..+.|.
T Consensus         5 aP~V~~l~p~~--~~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~yt   81 (101)
T d1kcvh2           5 APSVFPLVPGS--ATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVT   81 (101)
T ss_dssp             CCEEEEECCCS--CCTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCE
T ss_pred             CCEEEeECCCc--cccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEE
Confidence            56565443322  22357899999998874 3 3469998776543210  0      011223344443333 357899


Q ss_pred             EEeecCC
Q psy7616          78 CTATNGV   84 (147)
Q Consensus        78 C~~~~~~   84 (147)
                      |.+.+..
T Consensus        82 C~V~H~~   88 (101)
T d1kcvh2          82 CLVAHPK   88 (101)
T ss_dssp             EEEEEGG
T ss_pred             EEEEeCC
Confidence            9998754

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.75  E-value=0.0016  Score=33.47  Aligned_cols=35  Identities=11%  Similarity=0.344  Sum_probs=26.6

Q ss_pred             ceEEeecCCCCCeEEEEEeecCC----CCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGV----GDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~----g~~~~~~~~l~V  146 (147)
                      ...|.+++.+|+|.|.|......    .+..|..+.|.|
T Consensus        58 ~F~l~~v~~~~~G~Y~C~y~~~~~p~~wS~pSdpLeL~V   96 (96)
T d1nkra1          58 NFSISRMTQDLAGTYRCYGSVTHSPYQVSAPSDPLDIVI   96 (96)
T ss_dssp             EEEESSCCGGGCEEEEEEEEBTTBTTCCCCCCCCEEEEE
T ss_pred             EEEEcccCcccCeEEEEEEEcCCCCCcccCCCCCEEEEC
Confidence            46778999999999999886442    344577788776

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=96.75  E-value=0.0092  Score=31.78  Aligned_cols=60  Identities=22%  Similarity=0.435  Sum_probs=39.9

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCCC------C-----------Cce-ee-----eccceEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSLP------S-----------GEK-SL-----EGFSITLEKVDRHQA   73 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~~------~-----------~~~-~~-----~~~~l~~~~~~~~~~   73 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++.  ++.+.      .           .+. ..     +...|.|.+++.+|+
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~~eDt   90 (120)
T d1dn0b1          11 LLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVTAADT   90 (120)
T ss_dssp             EECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccccccc
Confidence            6789999999999887543  34789874  22210      0           001 11     112488889999999


Q ss_pred             eEEEEEe
Q psy7616          74 GVYQCTA   80 (147)
Q Consensus        74 g~y~C~~   80 (147)
                      +.|.|-.
T Consensus        91 A~YYCAr   97 (120)
T d1dn0b1          91 AVYYCAR   97 (120)
T ss_dssp             EEEEEEE
T ss_pred             cEEEEEe
Confidence            9999954

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.75  E-value=0.0012  Score=35.01  Aligned_cols=25  Identities=20%  Similarity=0.508  Sum_probs=20.9

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      ..|.|.+++.+|+|.|.|.+....+
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~~~   95 (113)
T d1h5ba_          71 STLHIRDAQLEDSGTYFCAAEASSG   95 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECSSS
T ss_pred             eEEEECCCCHhHCEEEEEEecCCCC
Confidence            3688899999999999999876544

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.74  E-value=0.0014  Score=34.87  Aligned_cols=25  Identities=20%  Similarity=0.387  Sum_probs=21.2

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      ...|.+.+++.+|+|.|.|.+....
T Consensus        72 ~~~L~I~~~~~~Dsa~YyCa~~~~~   96 (115)
T d1j8hd1          72 SFHLTKPSAHMSDAAEYFCAVSESP   96 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEESST
T ss_pred             EEEEeeccccccCCccceeeecCCC
Confidence            3468899999999999999997653

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.68  E-value=0.0013  Score=34.19  Aligned_cols=74  Identities=18%  Similarity=0.267  Sum_probs=37.9

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-C-CCceEEEecCCCCCCCc--e------eeeccceEEEeecCCCCeEEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-P-VPSIIWSKKDSSLPSGE--K------SLEGFSITLEKVDRHQAGVYQ   77 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~w~~~~~~~~~~~--~------~~~~~~l~~~~~~~~~~g~y~   77 (147)
                      +|.+...++..  ....++.+.|.|.+.+. | ...|.|..++.......  .      ....+.|.+..-.. ..+.|+
T Consensus         5 ~PsV~~l~p~~--~~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~yt   81 (102)
T d1mjuh2           5 APSVYPLAPVC--GDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSIT   81 (102)
T ss_dssp             CCEEEEECCCC--------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCE
T ss_pred             CCEEEEECCCc--cccCCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEE
Confidence            56665443332  23457789999998874 3 34699976653321100  0      11122344433332 346799


Q ss_pred             EEeecCC
Q psy7616          78 CTATNGV   84 (147)
Q Consensus        78 C~~~~~~   84 (147)
                      |.+.+..
T Consensus        82 C~V~H~~   88 (102)
T d1mjuh2          82 CNVAHPA   88 (102)
T ss_dssp             EEEEEGG
T ss_pred             EEEEECC
Confidence            9998854

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.68  E-value=0.0054  Score=32.70  Aligned_cols=27  Identities=26%  Similarity=0.644  Sum_probs=21.7

Q ss_pred             EEeeCCeEEEEEeecCCCCC--ceEEEec
Q psy7616          21 TVRKGGTITLECKASGNPVP--SIIWSKK   47 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~--~v~w~~~   47 (147)
                      .+++|+.+.|.|.+.|....  .+.|++.
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ   39 (121)
T d1nfdf1          11 LVQPGSSLKVSCAASGFTFSDFWMYWVRQ   39 (121)
T ss_dssp             EECTTCEEEEEEEEESSCGGGEEEEEEEE
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceeecee
Confidence            68899999999999886543  4789875

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.67  E-value=0.011  Score=30.51  Aligned_cols=63  Identities=13%  Similarity=0.326  Sum_probs=36.9

Q ss_pred             eCCeEEEEEeecCC-CCC--ceEEEecCCCCCCCc---------eeeeccceEEEeecCCCCeEEEEEeecCCCC
Q psy7616          24 KGGTITLECKASGN-PVP--SIIWSKKDSSLPSGE---------KSLEGFSITLEKVDRHQAGVYQCTATNGVGD   86 (147)
Q Consensus        24 ~g~~~~l~C~~~~~-~~~--~v~w~~~~~~~~~~~---------~~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~   86 (147)
                      .++.+.|.|.+.+. |..  .+.|.+++.......         .....+.|.+..........|.|.+.+....
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            46789999999884 442  366777765542110         0112234445444433456799999885443

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.65  E-value=0.0001  Score=38.74  Aligned_cols=76  Identities=17%  Similarity=0.323  Sum_probs=43.3

Q ss_pred             eCCceEEcCCCCceEEeeCCeEEEEEeecCC-CC-CceEEEecCCCCCCCce----e------eeccceEEEeecCCCCe
Q psy7616           7 VPPSIRTSPSNGQLTVRKGGTITLECKASGN-PV-PSIIWSKKDSSLPSGEK----S------LEGFSITLEKVDRHQAG   74 (147)
Q Consensus         7 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~~-~~v~w~~~~~~~~~~~~----~------~~~~~l~~~~~~~~~~g   74 (147)
                      .+|.+.+.++..  ....+..+.|.|.+.+. |. ..|.|.+++..+.....    .      .-.+.|.+.........
T Consensus         4 ~~P~V~v~~ps~--~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~   81 (104)
T d1nfde2           4 SSPKVTVFPPSP--EELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHN   81 (104)
T ss_dssp             BCCEEECCCCCH--HHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCS
T ss_pred             cCCEEEEECCCH--HHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCC
Confidence            356666544332  12246678899998874 33 36999998876532111    1      11223334333333445


Q ss_pred             EEEEEeecCC
Q psy7616          75 VYQCTATNGV   84 (147)
Q Consensus        75 ~y~C~~~~~~   84 (147)
                      .|+|.+.+..
T Consensus        82 ~ytC~V~H~~   91 (104)
T d1nfde2          82 RVSCQVTHEG   91 (104)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEEEEECC
Confidence            7999998864

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.65  E-value=0.0033  Score=33.64  Aligned_cols=61  Identities=25%  Similarity=0.442  Sum_probs=39.4

Q ss_pred             EEeeCCeEEEEEeecCCC----CCceEEEec--CCCCC-------C----------Ccee-e-----eccceEEEeecCC
Q psy7616          21 TVRKGGTITLECKASGNP----VPSIIWSKK--DSSLP-------S----------GEKS-L-----EGFSITLEKVDRH   71 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~----~~~v~w~~~--~~~~~-------~----------~~~~-~-----~~~~l~~~~~~~~   71 (147)
                      .+++|+.+.|.|.+.|..    ...+.|++.  +..+.       .          .+.. .     ....|.|.+++.+
T Consensus        11 ~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~e   90 (120)
T d2agjh1          11 LVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDPV   90 (120)
T ss_dssp             BCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCGG
T ss_pred             eECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeeec
Confidence            467899999999976532    235789973  22210       0          0000 0     1135889999999


Q ss_pred             CCeEEEEEee
Q psy7616          72 QAGVYQCTAT   81 (147)
Q Consensus        72 ~~g~y~C~~~   81 (147)
                      |++.|.|...
T Consensus        91 DsAvYyCAr~  100 (120)
T d2agjh1          91 DTATYYCART  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeEec
Confidence            9999999644

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.64  E-value=0.0059  Score=32.32  Aligned_cols=62  Identities=13%  Similarity=0.357  Sum_probs=40.8

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCCC--------CC---------ce-e-e----eccceEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSLP--------SG---------EK-S-L----EGFSITLEKVDRHQA   73 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~~--------~~---------~~-~-~----~~~~l~~~~~~~~~~   73 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++.  +..+.        ..         +. . .    +...|.+.+++.+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~~eDT   90 (116)
T d1a2yb_          11 LVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLHTDDT   90 (116)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeeeeccc
Confidence            6789999999999887543  34778874  22210        00         00 0 0    112488899999999


Q ss_pred             eEEEEEeec
Q psy7616          74 GVYQCTATN   82 (147)
Q Consensus        74 g~y~C~~~~   82 (147)
                      +.|.|-...
T Consensus        91 AvYYCAr~~   99 (116)
T d1a2yb_          91 ARYYCARER   99 (116)
T ss_dssp             EEEEEEEES
T ss_pred             eEEEEEEeC
Confidence            999997543

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.61  E-value=0.0021  Score=34.13  Aligned_cols=25  Identities=20%  Similarity=0.377  Sum_probs=20.7

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      .+|++.+++.+|+|.|.|.+....+
T Consensus        76 ~~L~I~~~~~~Dsg~YyCa~~~~~~  100 (116)
T d1tvda_          76 FHLVISPVRTEDSATYYCAFTLPPP  100 (116)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECTTT
T ss_pred             EeeeecCccccccccceeeEecCCC
Confidence            3678889999999999998876543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.56  E-value=0.0024  Score=33.85  Aligned_cols=78  Identities=21%  Similarity=0.271  Sum_probs=47.3

Q ss_pred             ceEEeeCCeEEEEEeecCC----CCCceEEEecCCC--CC----------------C---Cc-ee-----eeccceEEEe
Q psy7616          19 QLTVRKGGTITLECKASGN----PVPSIIWSKKDSS--LP----------------S---GE-KS-----LEGFSITLEK   67 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~----~~~~v~w~~~~~~--~~----------------~---~~-~~-----~~~~~l~~~~   67 (147)
                      .+.+..|++++|.|.....    ....+.|++....  ..                .   .+ ..     ....+|.|.+
T Consensus         8 ~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   87 (119)
T d1neua_           8 EVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVIHN   87 (119)
T ss_dssp             EEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEECS
T ss_pred             eEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEEEECC
Confidence            5688899999999985421    2346899873211  00                0   00 00     1123699999


Q ss_pred             ecCCCCeEEEEEeecCCCCc-eEEeEEEEE
Q psy7616          68 VDRHQAGVYQCTATNGVGDP-VTVDMTLEV   96 (147)
Q Consensus        68 ~~~~~~g~y~C~~~~~~~~~-~~~~~~l~v   96 (147)
                      ++..|+|.|.|.+.+..+.. ....+.|.|
T Consensus        88 v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          88 LDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             CCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             CChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence            99999999999998754322 233455544

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0014  Score=33.71  Aligned_cols=36  Identities=14%  Similarity=0.257  Sum_probs=27.3

Q ss_pred             CceEEeecCCCCCeEEEEEeecC-C-CCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG-V-GDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~-~-g~~~~~~~~l~V  146 (147)
                      ....|.+++.+|+|.|.|..... . -+..+..+.|.|
T Consensus        57 a~F~i~~v~~~~~G~Y~C~y~~~~~~~S~~Sd~leL~V   94 (96)
T d1ugna1          57 GQFPIPSITWEHTGRYRCYYGSDTAGRSESSDPLELVV   94 (96)
T ss_dssp             TEEEESSCCGGGCEEEEEEEEETTTEECCCCCCEEEEE
T ss_pred             EEEEEEecCHHHCCeEEEEEeCCCCCccccCCCEEEEE
Confidence            46778999999999999998644 2 244577777766

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.56  E-value=0.0025  Score=33.80  Aligned_cols=25  Identities=12%  Similarity=0.300  Sum_probs=20.9

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      ...|.+.+++.+|+|.|.|.+....
T Consensus        72 ~~~L~I~~~~~~Dsg~YyCa~~~~~   96 (115)
T d1lp9e1          72 SFHLQKSSAQLSDSALYYCALFLAS   96 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEECS
T ss_pred             eEEeeccccccccCccceEEEEcCC
Confidence            4568899999999999999886543

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.54  E-value=0.0011  Score=33.83  Aligned_cols=23  Identities=17%  Similarity=0.440  Sum_probs=20.0

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .+|.+.+++.+|+|.|.|.+...
T Consensus        57 ~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          57 VSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             EEEEECSCCGGGCEEEEEEEESS
T ss_pred             EeEEeeccccCcCccceeeEecC
Confidence            46888999999999999998754

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0046  Score=30.82  Aligned_cols=60  Identities=22%  Similarity=0.484  Sum_probs=39.9

Q ss_pred             EEeeCCeEEEEEeecCCCCCceEEEecCCCCCCC----ceeeeccceEEEeecC-CCCeEEEEEeec
Q psy7616          21 TVRKGGTITLECKASGNPVPSIIWSKKDSSLPSG----EKSLEGFSITLEKVDR-HQAGVYQCTATN   82 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~----~~~~~~~~l~~~~~~~-~~~g~y~C~~~~   82 (147)
                      .-..|..++|.|...  ....+.|.+++..+...    ........|.+...+. .++|.|.|.+..
T Consensus         6 VsISGTtV~LTCP~~--~~~~i~W~~n~~~~~~~~~~~~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           6 VSISGTTVILTCPQY--PGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EEEETTEEEEECSSC--TTSCEEEEETTEEESSSCSCTTEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EEEeCCEEEEECCCC--CCCceeeeeccccccCCCcccccccccceEEecccCccccCceEEEEcCC
Confidence            456899999999643  44679999987544321    1123344566666554 689999998754

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.52  E-value=0.0056  Score=33.10  Aligned_cols=62  Identities=19%  Similarity=0.367  Sum_probs=40.3

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCCC-------CC-----------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSLP-------SG-----------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~~-------~~-----------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++..  +.+.       ..           +. ..     +...|.+.+++.+|
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (130)
T d1rhhb1          10 VKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTNLRSDD   89 (130)
T ss_dssp             EECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeeccCCCC
Confidence            6788999999999987543  348888732  2110       00           00 00     11247788899999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      ++.|.|-...
T Consensus        90 tAvYyCAr~~   99 (130)
T d1rhhb1          90 TAVYYCARDF   99 (130)
T ss_dssp             CEEEEEEEEC
T ss_pred             cEEEEEEeec
Confidence            9999996543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.49  E-value=0.0036  Score=33.19  Aligned_cols=62  Identities=23%  Similarity=0.495  Sum_probs=40.5

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------CC--Cce----------ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------PS--GEK----------SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~~--~~~----------~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++..  +.+       ..  ...          .+     +...|.+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~L~~eD   90 (117)
T d1jpth1          11 LVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNSLRAED   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccccCCCC
Confidence            6788999999999987543  358888742  111       00  000          00     11247888999999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      .+.|.|-...
T Consensus        91 TAvYYCAr~~  100 (117)
T d1jpth1          91 TAVYYCARDT  100 (117)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEEeecC
Confidence            9999996543

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.49  E-value=0.0011  Score=35.22  Aligned_cols=26  Identities=19%  Similarity=0.360  Sum_probs=21.5

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      ...|.|.+++.+|+|.|.|.+....+
T Consensus        73 ~~~L~I~~~~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          73 SFNFTITASQVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEECSBT
T ss_pred             EEEEeecccccccCCCceEeCCCCCC
Confidence            34688899999999999998876654

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.47  E-value=0.0021  Score=33.81  Aligned_cols=25  Identities=16%  Similarity=0.379  Sum_probs=20.7

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ....|.+.+++.+|+|.|.|.+...
T Consensus        67 ~~~~L~I~~~~~~Dsa~YyCa~~~~   91 (110)
T d2esvd1          67 KSSTLILPHATLRDTAVYYCIVVRS   91 (110)
T ss_dssp             SEEEEEESSCCGGGCEEEEEEEEES
T ss_pred             CeeeehhcccccCCceEEEEEEeCC
Confidence            3456888999999999999988644

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.46  E-value=0.019  Score=31.09  Aligned_cols=62  Identities=21%  Similarity=0.553  Sum_probs=40.9

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------CCC-----------ceee------eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------PSG-----------EKSL------EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~~~-----------~~~~------~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++.  ++.+       ...           +...      ....|.+.+++.+|
T Consensus        11 lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L~~eD   90 (135)
T d1ieha_          11 LVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSLKSED   90 (135)
T ss_dssp             EECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESCCSSS
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeeeCccc
Confidence            6789999999999887543  34888873  2211       000           0000      11247888999999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      .+.|.|-...
T Consensus        91 TAvYYCAr~~  100 (135)
T d1ieha_          91 TAVYYCAKYS  100 (135)
T ss_dssp             CEEEEEEEBS
T ss_pred             ceeeEEEEec
Confidence            9999997653

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.44  E-value=0.0072  Score=32.06  Aligned_cols=61  Identities=25%  Similarity=0.511  Sum_probs=40.2

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------CCC-----------ce-e-e----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------PSG-----------EK-S-L----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~~~-----------~~-~-~----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++..  +.+       ...           +. . .    ....|.+.+++.+|
T Consensus        10 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~sL~~eD   89 (117)
T d1um5h1          10 LVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSSLTSED   89 (117)
T ss_dssp             EECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccccCCCc
Confidence            6788999999999987543  358898742  111       000           00 0 0    11248888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|-..
T Consensus        90 tAvYYCAr~   98 (117)
T d1um5h1          90 SAVYYCARS   98 (117)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999643

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.43  E-value=0.0015  Score=34.30  Aligned_cols=23  Identities=17%  Similarity=0.449  Sum_probs=19.7

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~l~~~Dsa~YyCa~~~~   93 (107)
T d1c5cl1          71 YSLTISSLESEDFADYYCLQYAS   93 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSS
T ss_pred             EEEEEhhhcccCCeEEEEecCcC
Confidence            46888999999999999987653

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.42  E-value=0.0018  Score=34.21  Aligned_cols=26  Identities=27%  Similarity=0.645  Sum_probs=21.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCCC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      ...|.+.+++.+|+|.|.|.+....+
T Consensus        70 ~~~L~i~~~~~~Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          70 HFPLTLESARPSHTSQYLCASSENIG   95 (112)
T ss_dssp             BCCEEBSSCCTTTCSEEEEEEECSSS
T ss_pred             ceEeeeccccccccccEEEEEecCCC
Confidence            34678889999999999998875543

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.42  E-value=0.0016  Score=34.10  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=19.6

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (106)
T d1i8ka_          71 FVFTIENTLSEDVGDYYCLQSFN   93 (106)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             eeecccCCccccCEEEeEecCcc
Confidence            46888999999999999987543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.41  E-value=0.0048  Score=32.94  Aligned_cols=61  Identities=25%  Similarity=0.512  Sum_probs=39.3

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCCC-------CC-----------ce-e-e----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSLP-------SG-----------EK-S-L----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~~-------~~-----------~~-~-~----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++.  +..+.       ..           +. . .    +...|.|.+++.+|
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~l~~eD   90 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVRLTSND   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccccCCCc
Confidence            5788999999999876543  34788873  22110       00           00 0 0    11147888899999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      ++.|.|-..
T Consensus        91 tA~YYCAr~   99 (120)
T d1pg7x1          91 SAVYYCARE   99 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeeec
Confidence            999999754

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.40  E-value=0.0046  Score=33.04  Aligned_cols=61  Identities=20%  Similarity=0.424  Sum_probs=40.1

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC--------CC-C---------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL--------PS-G---------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~--------~~-~---------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++..  +.+        .. .         +. ..     ....|.+.+++.+|
T Consensus        12 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~L~~eD   91 (122)
T d1vgeh1          12 VKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSSLRPED   91 (122)
T ss_dssp             EECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccccCCCc
Confidence            6789999999999987643  348888732  111        00 0         00 00     11147888899999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|-..
T Consensus        92 tA~YYCAr~  100 (122)
T d1vgeh1          92 TAVYYCARD  100 (122)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=96.40  E-value=0.0035  Score=32.32  Aligned_cols=35  Identities=11%  Similarity=0.146  Sum_probs=25.3

Q ss_pred             ceEEeecCCCCCeEEEEEeecCC----CCCcCeeeEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGV----GDPVTVDMTLEV  146 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~----g~~~~~~~~l~V  146 (147)
                      ...|..+...|+|.|+|......    .+..|..+.|.|
T Consensus        60 ~f~~~~~~~~~~G~Y~C~y~~~~~p~~wS~~SdpLeL~V   98 (99)
T d1nkra2          60 QADFPLGPATHGGTYRCFGSFHDSPYEWSKSSDPLLVSV   98 (99)
T ss_dssp             EEEEEEEECCSCEEEEEEEEETTEEEEECCCCCCEEEEE
T ss_pred             EEEEeccccccCEEEEEEeecCCCCCCccCCCCCEEEEE
Confidence            35678888899999999876443    244477777776

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.38  E-value=0.0031  Score=33.24  Aligned_cols=25  Identities=20%  Similarity=0.462  Sum_probs=20.7

Q ss_pred             CCceEEeecCCCCCeEEEEEeecCC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      ...|.+.+++.+|+|.|.|.+.+..
T Consensus        72 ~~~L~I~~l~~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          72 SASLTISGLQAEDEADYYCSSYDGS   96 (112)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             EeeEEeCcCccccCEEEEEeeecCC
Confidence            4568889999999999999886543

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.38  E-value=0.0074  Score=32.12  Aligned_cols=62  Identities=23%  Similarity=0.523  Sum_probs=40.7

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC------CC-----------Ccee-e-----eccceEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL------PS-----------GEKS-L-----EGFSITLEKVDRHQA   73 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~------~~-----------~~~~-~-----~~~~l~~~~~~~~~~   73 (147)
                      .+.+|+.+.|.|.+.+...  ..+.|++..  ..+      ..           .+.. +     +...|.|.+++.+|+
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~eDt   89 (119)
T d1kxvc_          10 TVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKPDDT   89 (119)
T ss_dssp             EECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCcCCc
Confidence            6789999999999877543  347898842  111      00           0000 0     112588889999999


Q ss_pred             eEEEEEeec
Q psy7616          74 GVYQCTATN   82 (147)
Q Consensus        74 g~y~C~~~~   82 (147)
                      +.|.|....
T Consensus        90 A~YYCAr~~   98 (119)
T d1kxvc_          90 AMYYCKPSL   98 (119)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEeeeecc
Confidence            999997543

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.37  E-value=0.0067  Score=32.00  Aligned_cols=61  Identities=23%  Similarity=0.581  Sum_probs=39.7

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------CC-----------Cce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------PS-----------GEK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~~-----------~~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++..  ..+       ..           .+. .+     ....|.+.+++.+|
T Consensus        11 ~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L~~eD   90 (114)
T d1indh1          11 SVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSLRSED   90 (114)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeeeccCc
Confidence            6789999999999877543  347788732  111       00           000 11     11248888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|-..
T Consensus        91 tAvYYCA~~   99 (114)
T d1indh1          91 TALYFCASH   99 (114)
T ss_dssp             CEEEEEECG
T ss_pred             ccEEEECCC
Confidence            999999653

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.37  E-value=0.0022  Score=33.61  Aligned_cols=24  Identities=25%  Similarity=0.710  Sum_probs=20.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...|.+.+++.+|+|.|.|.+.+.
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1j1pl_          70 DFTLSINSVETEDFGMYFCQQANS   93 (107)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEEEcccCcCCCEEEEEEcCCC
Confidence            356888999999999999987544

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.36  E-value=0.0019  Score=34.03  Aligned_cols=23  Identities=13%  Similarity=0.335  Sum_probs=19.8

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+...
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~~   95 (110)
T d1oaql_          73 AALTITGAQTEDEAIYFCALWYS   95 (110)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEET
T ss_pred             eeeecCCCCccccEeEEEEcccC
Confidence            46888999999999999997643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.35  E-value=0.0017  Score=34.23  Aligned_cols=23  Identities=39%  Similarity=0.718  Sum_probs=19.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..+.+.+++.+|+|.|.|.+...
T Consensus        74 ~~L~I~~~~~~Dsa~YyCa~~~~   96 (110)
T d2aq2a1          74 FSLILESATPSQTSVYFCASGGG   96 (110)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEEECCCCHhhCEEEEEeeCCC
Confidence            46778899999999999988643

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.34  E-value=0.0023  Score=33.52  Aligned_cols=23  Identities=22%  Similarity=0.518  Sum_probs=19.7

Q ss_pred             CCceEEeecCCCCCeEEEEEeec
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ...|.+.+++.+|+|.|.|.+..
T Consensus        70 ~~~L~I~~l~~~DSa~YyCa~~~   92 (107)
T d1kcvl1          70 DFTLTISSVQADDDADYYCGQSY   92 (107)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECS
T ss_pred             eeecEEHhheecCCceEEEEecC
Confidence            45688899999999999998754

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.32  E-value=0.0096  Score=31.54  Aligned_cols=62  Identities=19%  Similarity=0.484  Sum_probs=40.6

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------CCC-----------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------PSG-----------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~~~-----------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++.  ++.+       ...           +. ..     ....|.|.+++.+|
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~L~~eD   90 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSSLRSDD   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecccCcCc
Confidence            6788999999999877543  34788873  2211       000           00 01     11148888999999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      ++.|.|-...
T Consensus        91 tAvYYCA~~~  100 (117)
T d1iqdb1          91 TAVYYCAVPD  100 (117)
T ss_dssp             CEEEEEEECS
T ss_pred             ceEEEEeEcC
Confidence            9999997654

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.32  E-value=0.0014  Score=34.84  Aligned_cols=23  Identities=22%  Similarity=0.508  Sum_probs=20.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeec
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ...|.+.+++.+|+|.|.|.+..
T Consensus        72 ~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          72 SFHLRKASVHWSDSAVYFCAVSG   94 (115)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEecccccccccceecccccC
Confidence            45789999999999999998764

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.32  E-value=0.0022  Score=33.97  Aligned_cols=24  Identities=25%  Similarity=0.563  Sum_probs=20.3

Q ss_pred             CceEEeecCCCCCeEEEEEeecCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      ..|.|.+++.+|+|.|.|.+....
T Consensus        73 ~~L~I~~~~~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          73 FHMNILDTRRNDSGIYLCGAISLH   96 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEEEECccCcCCCeEEEEEEEeCC
Confidence            458889999999999999887543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.30  E-value=0.008  Score=32.11  Aligned_cols=61  Identities=25%  Similarity=0.528  Sum_probs=39.7

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------CCC-----------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------PSG-----------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~~~-----------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++.  +..+       ...           +. ..     ....|.|.+++.+|
T Consensus        11 ~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~L~~eD   90 (121)
T d1j05b_          11 LVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccccCcCc
Confidence            6788999999999876543  34788873  2211       000           00 00     11248888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      ++.|.|...
T Consensus        91 tAvYYCAr~   99 (121)
T d1j05b_          91 TAVYYCAPF   99 (121)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEeEee
Confidence            999999654

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.30  E-value=0.0054  Score=32.59  Aligned_cols=62  Identities=26%  Similarity=0.575  Sum_probs=40.5

Q ss_pred             EEeeCCeEEEEEeecCCCCC--ceEEEec--CCCC-------CC-C----------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPVP--SIIWSKK--DSSL-------PS-G----------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~--~v~w~~~--~~~~-------~~-~----------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|....  .+.|++.  +..+       .. .          +. ..     +.-.|.+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD   90 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKVRSED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccccCCCc
Confidence            67889999999998876433  4778873  2111       00 0          00 00     11247888999999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      ++.|.|-...
T Consensus        91 tAvYYCAr~~  100 (118)
T d2fbjh1          91 TALYYCARLH  100 (118)
T ss_dssp             CEEEEEEEEE
T ss_pred             ceEEEeeEec
Confidence            9999997544

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.28  E-value=0.0013  Score=35.40  Aligned_cols=21  Identities=29%  Similarity=0.650  Sum_probs=18.7

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|++.+++.+|+|.|.|.+..
T Consensus        83 ~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          83 VLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEcccccCCCEEEEeeEeC
Confidence            588999999999999998753

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.25  E-value=0.0073  Score=31.99  Aligned_cols=61  Identities=23%  Similarity=0.558  Sum_probs=39.6

Q ss_pred             EEeeCCeEEEEEeecCCCCC--ceEEEec--CCCC-------CC-----------Cce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPVP--SIIWSKK--DSSL-------PS-----------GEK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~--~v~w~~~--~~~~-------~~-----------~~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+++.|.|.+.|....  .+.|++.  ++.+       ..           .+. .+     ....|.+.+++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~L~~eD   90 (117)
T d1jnhb1          11 LARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNSLTSED   90 (117)
T ss_dssp             ECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccccCCCc
Confidence            56789999999999876443  4788873  2111       00           000 10     11247888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|...
T Consensus        91 TAvYYCAr~   99 (117)
T d1jnhb1          91 SAVYSCSRG   99 (117)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999643

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.25  E-value=0.003  Score=33.15  Aligned_cols=23  Identities=22%  Similarity=0.602  Sum_probs=19.7

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~i~~l~~~Dsa~YyCA~~~~   93 (108)
T d1jhll_          71 FTLTISSLEPEDFAMYICQQHNE   93 (108)
T ss_dssp             EEEEECSCCTTCCSEEEEEECSS
T ss_pred             EEeEeeeeEeccceEEEEeeCCC
Confidence            46888999999999999987654

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.23  E-value=0.0045  Score=32.88  Aligned_cols=60  Identities=20%  Similarity=0.421  Sum_probs=39.0

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------CC--C---------cee-e-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------PS--G---------EKS-L-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~~--~---------~~~-~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++..  .-+       +.  .         +.. .     ..-.|.+.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~L~~eD   90 (118)
T d1nlbh1          11 LKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINSLKNED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeeecccCc
Confidence            5789999999999887543  347888732  111       00  0         000 0     11247888999999


Q ss_pred             CeEEEEEe
Q psy7616          73 AGVYQCTA   80 (147)
Q Consensus        73 ~g~y~C~~   80 (147)
                      ++.|.|-.
T Consensus        91 tAvYYCAr   98 (118)
T d1nlbh1          91 TATYFCAR   98 (118)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999954

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.23  E-value=0.01  Score=31.59  Aligned_cols=61  Identities=21%  Similarity=0.462  Sum_probs=39.5

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCCC-------C--C---------cee-e-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSLP-------S--G---------EKS-L-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~~-------~--~---------~~~-~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++..  +.+.       .  .         +.. .     ....|.+.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L~~eD   90 (121)
T d2p49b1          11 LVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSLKPED   90 (121)
T ss_dssp             EEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeeccccc
Confidence            5789999999999876543  347888732  2110       0  0         000 0     11247788889999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|...
T Consensus        91 tAvYYCAr~   99 (121)
T d2p49b1          91 TATYYCAAG   99 (121)
T ss_dssp             CEEEEEEES
T ss_pred             eeEEeeecc
Confidence            999999754

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.22  E-value=0.0052  Score=32.54  Aligned_cols=61  Identities=30%  Similarity=0.534  Sum_probs=39.3

Q ss_pred             EEeeCCeEEEEEeecCCC--CCceEEEec--CCCC-------CC--C---------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNP--VPSIIWSKK--DSSL-------PS--G---------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~--~~~v~w~~~--~~~~-------~~--~---------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|..  ...+.|++.  +..+       ..  .         +. ..     ....|.|.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l~~eD   90 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSLTFED   90 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeecCcCC
Confidence            578899999999987653  234788873  2111       00  0         00 00     11248888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      ++.|.|-..
T Consensus        91 tAvYYCAr~   99 (115)
T d1f3dh1          91 SAVYYCAND   99 (115)
T ss_dssp             CEEEEEEEC
T ss_pred             cEEEEEecc
Confidence            999999654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0038  Score=31.78  Aligned_cols=36  Identities=19%  Similarity=0.232  Sum_probs=25.5

Q ss_pred             CceEEeecCCCCCeEEEEEeec-CC-CCCcCeeeEEEE
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN-GV-GDPVTVDMTLEV  146 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n-~~-g~~~~~~~~l~V  146 (147)
                      ....|.+++.+|+|.|+|.... .. -+..|..+.|.|
T Consensus        54 a~F~i~~v~~~~~G~Y~C~~~~~~~~wS~~SdpLeL~V   91 (93)
T d1olla2          54 AEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV   91 (93)
T ss_dssp             EEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred             eEEEecccChhcCceEEEEeECCCCCcCCCCCCEEEEe
Confidence            3577799999999999997532 22 233466777766

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.21  E-value=0.0089  Score=32.04  Aligned_cols=61  Identities=23%  Similarity=0.481  Sum_probs=39.9

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------CCC-----------ce-e-e----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------PSG-----------EK-S-L----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~~~-----------~~-~-~----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++..  ..+       ...           +. . .    ....|.+.+++.+|
T Consensus        10 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~~eD   89 (124)
T d1zvya1          10 SVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVKSED   89 (124)
T ss_dssp             ECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccccCCc
Confidence            5678999999999887543  358899842  211       000           00 0 0    11247788889999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      ++.|.|-..
T Consensus        90 tAvYYCAr~   98 (124)
T d1zvya1          90 TAIYTCGAT   98 (124)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEeec
Confidence            999999654

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.20  E-value=0.0023  Score=33.73  Aligned_cols=23  Identities=17%  Similarity=0.401  Sum_probs=19.4

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+.+.
T Consensus        74 ~~L~i~~l~~~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          74 ASLTISGLKTEDEADYYCQSYDA   96 (111)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEET
T ss_pred             cccccccCCcccCcEEEEeeccC
Confidence            36777899999999999987654

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.0016  Score=34.53  Aligned_cols=23  Identities=35%  Similarity=0.691  Sum_probs=19.7

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|++.+++.+|+|.|.|.+...
T Consensus        77 ~~L~I~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          77 FVLTLSDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEET
T ss_pred             hhcEEccCCCCCCEEEeEeEcCC
Confidence            35888999999999999998643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=96.17  E-value=0.0017  Score=34.38  Aligned_cols=23  Identities=26%  Similarity=0.635  Sum_probs=20.0

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .+|+|.+++.+|+|.|.|.+...
T Consensus        66 ~~L~I~~l~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_          66 FSLRISDLRVEDSGTYKCQAFYS   88 (113)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEE
T ss_pred             eeeeecccccCCcceEeeeeecc
Confidence            46888999999999999998554

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=96.16  E-value=0.0019  Score=34.14  Aligned_cols=24  Identities=21%  Similarity=0.509  Sum_probs=20.4

Q ss_pred             CceEEeecCCCCCeEEEEEeecCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      ..|++.+++.+|+|.|.|.+....
T Consensus        65 ~~L~I~~l~~~Dsa~YyCA~~~~~   88 (112)
T d1sq2n_          65 FSLRINDLTVEDGGTYRCGLGVAG   88 (112)
T ss_dssp             EEEEECSCCGGGCEEEEEEECBTT
T ss_pred             eeeEecCCcCccCEEEeEEEecCC
Confidence            468889999999999999886553

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=96.16  E-value=0.00077  Score=34.70  Aligned_cols=26  Identities=15%  Similarity=0.314  Sum_probs=21.9

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVGD  136 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g~  136 (147)
                      ..|.+.+++.+|+|.|.|.+....|.
T Consensus        64 ~~L~I~~~~~~Dsa~YyCA~~~~~g~   89 (96)
T d1ymmd1          64 SSLLITASRAADTASYFCATDTTSGT   89 (96)
T ss_dssp             CCBCCSSCCSTTCSCCEEEEEETTSC
T ss_pred             cccCcCCCCcccCEEEeEeEecCCCC
Confidence            46888999999999999998766553

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.15  E-value=0.0026  Score=33.31  Aligned_cols=24  Identities=8%  Similarity=0.412  Sum_probs=20.0

Q ss_pred             CCceEEeecCCCCCeEEEEEeecC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...|.+.+++.+|+|.|.|.+...
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1ospl1          70 DYTLSITSLQTEDVATYFCQQYWS   93 (107)
T ss_dssp             SEEEEESSCCGGGCSEEEEEECSS
T ss_pred             eEEeEEcccccccCCcEEEeeccC
Confidence            356888999999999999987543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=96.15  E-value=0.0033  Score=33.12  Aligned_cols=23  Identities=9%  Similarity=0.267  Sum_probs=19.9

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+...
T Consensus        72 ~~L~I~~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          72 ATLGITGLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEET
T ss_pred             eeeEEeeeccccCcceEEeecCC
Confidence            46888999999999999988644

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.14  E-value=0.0084  Score=31.90  Aligned_cols=62  Identities=24%  Similarity=0.509  Sum_probs=40.3

Q ss_pred             EEeeCCeEEEEEeecCCCCC--ceEEEecC--CCC-------CCC-----------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPVP--SIIWSKKD--SSL-------PSG-----------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~--~v~w~~~~--~~~-------~~~-----------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|....  .+.|++..  ..+       ...           +. ..     ....|.+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~sL~~eD   90 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSSLRSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeeccCccc
Confidence            56889999999998875433  47888742  111       000           00 00     11247888999999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      .+.|.|-...
T Consensus        91 TAvYYCAr~~  100 (119)
T d1rz7h1          91 TAVYYCAADP  100 (119)
T ss_dssp             CEEEEEEECT
T ss_pred             ceEEEEeecC
Confidence            9999996543

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.14  E-value=0.00094  Score=35.80  Aligned_cols=77  Identities=12%  Similarity=0.165  Sum_probs=41.2

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-C---CCceEEEecCCCCCCCce----eeec------cceEEEeecCCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-P---VPSIIWSKKDSSLPSGEK----SLEG------FSITLEKVDRHQA   73 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~---~~~v~w~~~~~~~~~~~~----~~~~------~~l~~~~~~~~~~   73 (147)
                      .|.+...++...-....+..+.|.|.+.+. |   ...+.|.+++........    ...+      +.|.+..-.-...
T Consensus        15 ~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g   94 (119)
T d1igtb3          15 GPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSG   94 (119)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTT
T ss_pred             CCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCC
Confidence            455555544321122357788999998763 3   346889998865532111    1111      1222222221234


Q ss_pred             eEEEEEeecCC
Q psy7616          74 GVYQCTATNGV   84 (147)
Q Consensus        74 g~y~C~~~~~~   84 (147)
                      ..|.|.+.+..
T Consensus        95 ~~ytC~V~H~~  105 (119)
T d1igtb3          95 KEFKCKVNNKD  105 (119)
T ss_dssp             CEEEEEEECTT
T ss_pred             CeEEEEEEECC
Confidence            56999999854

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=96.14  E-value=0.0028  Score=33.44  Aligned_cols=24  Identities=25%  Similarity=0.639  Sum_probs=20.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...|.+.+++.+|+|.|.|.+.+.
T Consensus        74 ~~~L~I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          74 DFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEEEcccccccCccEEEeecCC
Confidence            346888999999999999987654

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.14  E-value=0.011  Score=31.80  Aligned_cols=61  Identities=23%  Similarity=0.518  Sum_probs=39.7

Q ss_pred             EEeeCCeEEEEEeecCCCCC--ceEEEecC--CCC-------CC-----------Cce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPVP--SIIWSKKD--SSL-------PS-----------GEK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~--~v~w~~~~--~~~-------~~-----------~~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+....  .+.|++..  +.+       ..           .+. ..     ....|.+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRNLRSDD   90 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeeeccccC
Confidence            67899999999999876543  36787732  111       00           000 00     12247788899999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|...
T Consensus        91 TA~YYCAr~   99 (128)
T d2nxyd1          91 TAVYFCAGV   99 (128)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeEE
Confidence            999999754

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.13  E-value=0.018  Score=31.24  Aligned_cols=62  Identities=19%  Similarity=0.385  Sum_probs=39.9

Q ss_pred             EEeeCCeEEEEEeecCCCC----CceEEEecC--CCCC--------CC---------ce-ee-----eccceEEEeecCC
Q psy7616          21 TVRKGGTITLECKASGNPV----PSIIWSKKD--SSLP--------SG---------EK-SL-----EGFSITLEKVDRH   71 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~----~~v~w~~~~--~~~~--------~~---------~~-~~-----~~~~l~~~~~~~~   71 (147)
                      .+.+|+.+.|.|.+.+...    .-+.|++..  ..+.        ..         +. ..     +...|.|.+++.+
T Consensus        11 ~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l~~e   90 (132)
T d1tjgh1          11 LVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRVSPV   90 (132)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccCCcc
Confidence            6788999999999876432    247898732  2210        00         00 00     1124888999999


Q ss_pred             CCeEEEEEeec
Q psy7616          72 QAGVYQCTATN   82 (147)
Q Consensus        72 ~~g~y~C~~~~   82 (147)
                      |++.|.|-...
T Consensus        91 DtAvYYCAr~~  101 (132)
T d1tjgh1          91 DTATYFCAHRR  101 (132)
T ss_dssp             GCEEEEEEEEC
T ss_pred             cceEEEEEEec
Confidence            99999997543

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.12  E-value=0.0035  Score=32.89  Aligned_cols=22  Identities=14%  Similarity=0.489  Sum_probs=19.2

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.+.+++.+|+|.|.|.+..
T Consensus        73 ~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          73 YTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             eEEEEeeceeCcCceEEEeecC
Confidence            4688899999999999998764

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.09  E-value=0.0087  Score=31.63  Aligned_cols=62  Identities=27%  Similarity=0.517  Sum_probs=40.1

Q ss_pred             eEEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------CCC-----------ce-e-e----eccceEEEeecCC
Q psy7616          20 LTVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------PSG-----------EK-S-L----EGFSITLEKVDRH   71 (147)
Q Consensus        20 ~~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~~~-----------~~-~-~----~~~~l~~~~~~~~   71 (147)
                      -.+++|+.+.|.|.+.|...  ..+.|++.  ++.+       ...           +. . .    ....|.+.+++.+
T Consensus        10 ~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~sL~~e   89 (116)
T d1mjuh1          10 ELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSSLTSD   89 (116)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccccCCC
Confidence            37789999999999987543  34788873  2211       000           00 1 0    1124778889999


Q ss_pred             CCeEEEEEee
Q psy7616          72 QAGVYQCTAT   81 (147)
Q Consensus        72 ~~g~y~C~~~   81 (147)
                      |.+.|.|-..
T Consensus        90 DtAvYYCAr~   99 (116)
T d1mjuh1          90 DSAVYYCANK   99 (116)
T ss_dssp             GCEEEEEEEE
T ss_pred             CceEEEEccc
Confidence            9999999643

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.09  E-value=0.012  Score=31.59  Aligned_cols=61  Identities=25%  Similarity=0.484  Sum_probs=39.5

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------CCC-----------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------PSG-----------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~~~-----------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++..  .-+       ...           +. ..     +...|.+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL~~eD   90 (127)
T d2fx7h1          11 VKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeecccCccc
Confidence            5678999999999987543  347888732  111       000           00 00     11247888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|...
T Consensus        91 TavYYCAR~   99 (127)
T d2fx7h1          91 TAVYYCARE   99 (127)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeec
Confidence            999999654

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=96.07  E-value=0.003  Score=33.42  Aligned_cols=25  Identities=16%  Similarity=0.442  Sum_probs=21.0

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      ..|.+.+++.+|+|.|.|.+....+
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~~~~   97 (115)
T d1fo0a_          73 IGLIITATQIEDSAVYFCAMRGDYG   97 (115)
T ss_dssp             EEEEECSCCGGGCEEEEEEEECCCT
T ss_pred             EEEEECCCCccccccccceeecCCC
Confidence            4688899999999999999876543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.07  E-value=0.0035  Score=32.74  Aligned_cols=61  Identities=21%  Similarity=0.423  Sum_probs=38.1

Q ss_pred             EEeeCCeEEEEEeecCCC--CCceEEEecC--CCC------C-C----------Cce-ee-----eccceEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKASGNP--VPSIIWSKKD--SSL------P-S----------GEK-SL-----EGFSITLEKVDRHQA   73 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~--~~~v~w~~~~--~~~------~-~----------~~~-~~-----~~~~l~~~~~~~~~~   73 (147)
                      .+++|+.+.|.|.+.+..  ...+.|++..  ..+      . .          .+. ..     +...|.+.+++.+|.
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            357899999999987643  3457888742  211      0 0          000 10     112488889999999


Q ss_pred             eEEEEEee
Q psy7616          74 GVYQCTAT   81 (147)
Q Consensus        74 g~y~C~~~   81 (147)
                      +.|.|...
T Consensus        84 AvYyCA~~   91 (107)
T d1sjva_          84 AVYYCYTH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eeeeEecc
Confidence            99999654

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.07  E-value=0.008  Score=31.84  Aligned_cols=62  Identities=24%  Similarity=0.453  Sum_probs=40.4

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCCC------C-C-c---------e--ee----eccceEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSLP------S-G-E---------K--SL----EGFSITLEKVDRHQA   73 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~~------~-~-~---------~--~~----~~~~l~~~~~~~~~~   73 (147)
                      .+++|+++.|.|.+.|...  ..+.|++.  ++.+.      . . .         .  ..    ....|.+.+++.+|.
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eDT   90 (116)
T d1fn4b1          11 LVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDDT   90 (116)
T ss_dssp             BCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCCC
T ss_pred             eECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCCC
Confidence            4678999999999987543  34889873  32221      0 0 0         0  00    112478889999999


Q ss_pred             eEEEEEeec
Q psy7616          74 GVYQCTATN   82 (147)
Q Consensus        74 g~y~C~~~~   82 (147)
                      +.|.|-...
T Consensus        91 AvYyCAr~~   99 (116)
T d1fn4b1          91 GTYYCTRDL   99 (116)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEeec
Confidence            999996543

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=96.07  E-value=0.003  Score=33.07  Aligned_cols=22  Identities=23%  Similarity=0.635  Sum_probs=19.0

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.+.+++.+|+|.|.|.+.+
T Consensus        72 ~~L~I~~~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          72 FTLTISRLEPEDFAVYYCQQYG   93 (108)
T ss_dssp             EEEEESSCCGGGCSEEEEEECS
T ss_pred             EEEEehHheecccEEEeeecCC
Confidence            3588899999999999998753

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=96.06  E-value=0.0027  Score=33.24  Aligned_cols=23  Identities=17%  Similarity=0.423  Sum_probs=19.1

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+.+.
T Consensus        71 ~~L~I~~l~~~DsA~YyCa~~~~   93 (107)
T d1tjgl1          71 FTLTISTLRPEDFATYYCQQLHF   93 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSB
T ss_pred             EEEEeccceeCcCceEEEEECcC
Confidence            46888999999999999976543

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.06  E-value=0.012  Score=31.42  Aligned_cols=61  Identities=21%  Similarity=0.484  Sum_probs=39.6

Q ss_pred             EEeeCCeEEEEEeecCCCC--C--ceEEEecC--CCCC-------CC----------ce-ee-----eccceEEEeecCC
Q psy7616          21 TVRKGGTITLECKASGNPV--P--SIIWSKKD--SSLP-------SG----------EK-SL-----EGFSITLEKVDRH   71 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~--~v~w~~~~--~~~~-------~~----------~~-~~-----~~~~l~~~~~~~~   71 (147)
                      .+++|+.+.|.|.+.|...  .  .+.|++..  +.+.       ..          +. ..     +...|.+.+++.+
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~sL~~e   90 (120)
T d1ai1h1          11 VIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLISVTNE   90 (120)
T ss_dssp             EECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceeeeecc
Confidence            6789999999999877432  2  37798742  2210       00          00 00     1124888899999


Q ss_pred             CCeEEEEEee
Q psy7616          72 QAGVYQCTAT   81 (147)
Q Consensus        72 ~~g~y~C~~~   81 (147)
                      |.+.|.|...
T Consensus        91 DtAvYYCAr~  100 (120)
T d1ai1h1          91 DTAMYYCSRE  100 (120)
T ss_dssp             GCEEEEEEEE
T ss_pred             ceeEEEEEec
Confidence            9999999644

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.06  E-value=0.029  Score=29.92  Aligned_cols=62  Identities=19%  Similarity=0.462  Sum_probs=40.1

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------C-C-C---------ce-e-e----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------P-S-G---------EK-S-L----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~-~-~---------~~-~-~----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++..  +.+       . . .         +. . .    ....|.+.+++.+|
T Consensus        11 lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L~~eD   90 (123)
T d1mqkh_          11 LVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSLKSED   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeeeccCc
Confidence            6789999999999877543  347888732  111       0 0 0         00 0 0    11247888999999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      .+.|.|-...
T Consensus        91 tAvYYCAr~~  100 (123)
T d1mqkh_          91 TAMYYCVRHE  100 (123)
T ss_dssp             CEEEEEEEEE
T ss_pred             ccceeEEecC
Confidence            9999996543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.05  E-value=0.021  Score=30.48  Aligned_cols=61  Identities=16%  Similarity=0.387  Sum_probs=38.7

Q ss_pred             EEeeCCeEEEEEeecCCCC----CceEEEec--CCCCC--------CC---------ce-e-e----eccceEEEeecCC
Q psy7616          21 TVRKGGTITLECKASGNPV----PSIIWSKK--DSSLP--------SG---------EK-S-L----EGFSITLEKVDRH   71 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~----~~v~w~~~--~~~~~--------~~---------~~-~-~----~~~~l~~~~~~~~   71 (147)
                      .+++|+.+.|.|.+.|...    ..+.|++.  +..+.        ..         +. . .    +...|.|.+++.+
T Consensus        11 ~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl~~e   90 (123)
T d1r0ah1          11 IVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTVETA   90 (123)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSCCGG
T ss_pred             eECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeecccc
Confidence            6788999999999876432    23679873  22210        00         00 0 0    1124888899999


Q ss_pred             CCeEEEEEee
Q psy7616          72 QAGVYQCTAT   81 (147)
Q Consensus        72 ~~g~y~C~~~   81 (147)
                      |++.|.|-..
T Consensus        91 DsAvYyCAr~  100 (123)
T d1r0ah1          91 DTAIYYCAQS  100 (123)
T ss_dssp             GCEEEEEEEE
T ss_pred             cceEEeeccc
Confidence            9999999643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.05  E-value=0.0086  Score=32.17  Aligned_cols=61  Identities=25%  Similarity=0.503  Sum_probs=39.3

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------CCC-----------ce-e-e----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------PSG-----------EK-S-L----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~~~-----------~~-~-~----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++.  ++.+       +..           +. . .    +...|.+.+++.+|
T Consensus        11 l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~sL~~eD   90 (125)
T d1rihh1          11 LAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNSLTSED   90 (125)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeeccCccc
Confidence            6788999999999877543  34778873  2111       000           00 0 0    11247788899999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      ++.|.|-..
T Consensus        91 tAvYYCAR~   99 (125)
T d1rihh1          91 SAVYYCARE   99 (125)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeee
Confidence            999999654

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.04  E-value=0.0078  Score=30.91  Aligned_cols=59  Identities=22%  Similarity=0.164  Sum_probs=33.7

Q ss_pred             CCeEEEEEeecCCCC--CceEEEecCCCCCCCc---------eeeeccceEE---EeecCCCCeEEEEEeecC
Q psy7616          25 GGTITLECKASGNPV--PSIIWSKKDSSLPSGE---------KSLEGFSITL---EKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        25 g~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~---------~~~~~~~l~~---~~~~~~~~g~y~C~~~~~   83 (147)
                      ...++|.|.+.+..+  ..|.|.+++..+....         .....+....   -.+...+...|.|.+.+.
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGI   86 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeC
Confidence            457899999988533  3599999886653210         0011111111   123344556799999864

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.04  E-value=0.011  Score=31.75  Aligned_cols=60  Identities=20%  Similarity=0.442  Sum_probs=39.4

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------CCC-----------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------PSG-----------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~~~-----------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++.  ++.+       +..           +. ..     +...|.+..++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~L~~eD   90 (127)
T d1n0xh1          11 VKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRSLRSAD   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEccCCCC
Confidence            7789999999999987543  34788873  2211       000           00 11     11247788899999


Q ss_pred             CeEEEEEe
Q psy7616          73 AGVYQCTA   80 (147)
Q Consensus        73 ~g~y~C~~   80 (147)
                      .+.|.|-.
T Consensus        91 tAvYYCAR   98 (127)
T d1n0xh1          91 TAVYYCAR   98 (127)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEEe
Confidence            99999964

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.04  E-value=0.013  Score=31.17  Aligned_cols=61  Identities=18%  Similarity=0.434  Sum_probs=39.9

Q ss_pred             EEeeCCeEEEEEeecCCCCC---ceEEEec--CCCC--------CCC---------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPVP---SIIWSKK--DSSL--------PSG---------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~---~v~w~~~--~~~~--------~~~---------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|....   .+.|++.  ++-+        ...         +. ..     +...|.+.+++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL~~eD   90 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSVTTED   90 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccccccCC
Confidence            67899999999999876542   3789873  2211        000         00 00     11247888899999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      ...|.|-..
T Consensus        91 TAvYYCAr~   99 (119)
T d1ncwh1          91 TATYYCAGL   99 (119)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEeEe
Confidence            999999644

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.04  E-value=0.0028  Score=33.14  Aligned_cols=23  Identities=13%  Similarity=0.456  Sum_probs=19.8

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+.+.
T Consensus        70 ~~L~I~~~~~~DsA~YyCa~~~~   92 (106)
T d1a0ql1          70 YSFSISNLEPEDIATYYCLQYYN   92 (106)
T ss_dssp             EEEEECSCCGGGCSEEEEEECSS
T ss_pred             eeeEehhhcccCCEeEEEEEeCC
Confidence            46888999999999999987543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.03  E-value=0.018  Score=30.69  Aligned_cols=62  Identities=18%  Similarity=0.428  Sum_probs=40.4

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCCC-------C-C------------ce-ee-----eccceEEEeecC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSLP-------S-G------------EK-SL-----EGFSITLEKVDR   70 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~~-------~-~------------~~-~~-----~~~~l~~~~~~~   70 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++.  +..+.       . +            +. .+     +...|.+.+++.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~sL~~   90 (122)
T d1q9rb1          11 LVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNTLRA   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECSCCG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceeeecc
Confidence            6788999999999877543  34888873  22210       0 0            00 00     112478889999


Q ss_pred             CCCeEEEEEeec
Q psy7616          71 HQAGVYQCTATN   82 (147)
Q Consensus        71 ~~~g~y~C~~~~   82 (147)
                      +|.+.|.|....
T Consensus        91 eDTAvYYCar~~  102 (122)
T d1q9rb1          91 EDSATYYCARDH  102 (122)
T ss_dssp             GGCEEEEEEECC
T ss_pred             CcceEEEEEecC
Confidence            999999997543

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.02  E-value=0.0076  Score=31.97  Aligned_cols=60  Identities=28%  Similarity=0.545  Sum_probs=38.6

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------C-CC----------c-eee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------P-SG----------E-KSL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~-~~----------~-~~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++.  ++-+       . ..          + ...     ....|.+.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~L~~eD   90 (117)
T d1mfah1          11 VARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSSLTSED   90 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecccCCCc
Confidence            6788999999999877543  34778873  2211       0 00          0 000     11247888999999


Q ss_pred             CeEEEEEe
Q psy7616          73 AGVYQCTA   80 (147)
Q Consensus        73 ~g~y~C~~   80 (147)
                      .+.|.|-.
T Consensus        91 tAvYYCAr   98 (117)
T d1mfah1          91 SAVYYCTR   98 (117)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEec
Confidence            99999964

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.02  E-value=0.0033  Score=32.92  Aligned_cols=23  Identities=26%  Similarity=0.579  Sum_probs=19.4

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+...
T Consensus        71 ~~L~I~~~~~~DsA~YyCa~~~~   93 (107)
T d1mexl1          71 FTLTINNVQSEDLAEYFCQQYNS   93 (107)
T ss_dssp             EEEEESSCCGGGCSEEEEEECSS
T ss_pred             eeeeechhheecceeEEEeECCC
Confidence            56888999999999999987543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.02  E-value=0.0095  Score=31.67  Aligned_cols=61  Identities=25%  Similarity=0.512  Sum_probs=39.7

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC------C-CC-----------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL------P-SG-----------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~------~-~~-----------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++.  ++.+      . ..           +. ..     +...|.+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~sL~~eD   90 (119)
T d1eapb1          11 LVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNSLTSED   90 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeecccCCc
Confidence            5688999999999887543  34888873  2111      0 00           00 00     11247888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|-..
T Consensus        91 TAvYYCAr~   99 (119)
T d1eapb1          91 SAVYFCKRS   99 (119)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEEEe
Confidence            999999643

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.02  E-value=0.013  Score=30.30  Aligned_cols=59  Identities=24%  Similarity=0.448  Sum_probs=34.4

Q ss_pred             eCCeEEEEEeecCCCCC--ceEEEecC--CCC------C-C-----------Cce-e-----eeccceEEEeecCCCCeE
Q psy7616          24 KGGTITLECKASGNPVP--SIIWSKKD--SSL------P-S-----------GEK-S-----LEGFSITLEKVDRHQAGV   75 (147)
Q Consensus        24 ~g~~~~l~C~~~~~~~~--~v~w~~~~--~~~------~-~-----------~~~-~-----~~~~~l~~~~~~~~~~g~   75 (147)
                      +|+.+.|.|.+.+....  .+.|++..  +.+      . .           .+. .     .....|.+.+++.+|.+.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            47899999998875433  48888732  211      0 0           000 0     112258889999999999


Q ss_pred             EEEEeec
Q psy7616          76 YQCTATN   82 (147)
Q Consensus        76 y~C~~~~   82 (147)
                      |.|-...
T Consensus        81 YYCAr~~   87 (103)
T d1oari_          81 YYCARMW   87 (103)
T ss_dssp             EEEEEEE
T ss_pred             EEeEEEC
Confidence            9996543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.01  E-value=0.012  Score=31.68  Aligned_cols=62  Identities=21%  Similarity=0.520  Sum_probs=40.0

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------CCC--c---------ee--e----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------PSG--E---------KS--L----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~~~--~---------~~--~----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++..  +.+       ...  .         ..  .    +...|.+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L~~eD   90 (127)
T d2fb4h1          11 VVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSLRPED   90 (127)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeeeeecc
Confidence            6788999999999887543  347788732  111       000  0         00  0    11247888999999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      .+.|.|-...
T Consensus        91 TA~YYCAr~~  100 (127)
T d2fb4h1          91 TGVYFCARDG  100 (127)
T ss_dssp             CEEEEEEEEC
T ss_pred             eeEEEEEEec
Confidence            9999997543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.01  E-value=0.0094  Score=31.86  Aligned_cols=62  Identities=21%  Similarity=0.442  Sum_probs=40.1

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------CC--C---------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------PS--G---------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~~--~---------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++..  +.+       ..  .         +. .+     ....|.+.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL~~eD   90 (122)
T d1bz7b1          11 LVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSLRSED   90 (122)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeeecccC
Confidence            5678999999999887543  347888732  111       00  0         00 00     11247788899999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      .+.|.|-...
T Consensus        91 TAvYYCAr~~  100 (122)
T d1bz7b1          91 TAIYYCTRGG  100 (122)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEeecCC
Confidence            9999996543

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.00069  Score=35.44  Aligned_cols=63  Identities=13%  Similarity=0.160  Sum_probs=35.3

Q ss_pred             EeeCCeEEEEEeecCC-CC---CceEEEecCCCCCCCce----eee------ccceEEEeecCCCCeEEEEEeecCC
Q psy7616          22 VRKGGTITLECKASGN-PV---PSIIWSKKDSSLPSGEK----SLE------GFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~-~~---~~v~w~~~~~~~~~~~~----~~~------~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      +..++.+.|.|.+.+. |.   ..+.|.+++..+.....    ...      .+.|.+..-.-.....|.|.+.+..
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~   91 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKA   91 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCC
Confidence            3457788999998764 32   35789998765432211    111      1123332222123447999998854

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.00  E-value=0.0075  Score=32.03  Aligned_cols=24  Identities=29%  Similarity=0.689  Sum_probs=20.4

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      .|.+.+++.+|+|.|.|.+....|
T Consensus        78 ~L~i~~~~~~Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          78 TLTVTSAHPEDSGFYVCSALAGSG  101 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSC
T ss_pred             cccccccccccCceEEEEEecCCC
Confidence            588899999999999999865544

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.99  E-value=0.0047  Score=32.45  Aligned_cols=22  Identities=18%  Similarity=0.578  Sum_probs=19.2

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|++.+++.+|+|.|.|.+..
T Consensus        73 ~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          73 STLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCcccCCCceEEEeeeC
Confidence            4688899999999999998754

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=95.99  E-value=0.01  Score=31.50  Aligned_cols=62  Identities=26%  Similarity=0.524  Sum_probs=39.8

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------C-C-C---------ce-e-e----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------P-S-G---------EK-S-L----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~-~-~---------~~-~-~----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++.  ++.+       . . .         +. . .    ....|.+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~L~~eD   90 (118)
T d1ct8b1          11 LVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSSLTTED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccccCCCc
Confidence            6788999999999877543  34778873  2211       0 0 0         00 0 0    11247788999999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      .+.|.|-...
T Consensus        91 tAvYYCAr~~  100 (118)
T d1ct8b1          91 SAIYYCARYR  100 (118)
T ss_dssp             CEEEEEEEEC
T ss_pred             ceEEEEeeec
Confidence            9999996543

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.98  E-value=0.012  Score=31.47  Aligned_cols=61  Identities=21%  Similarity=0.500  Sum_probs=39.6

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC------C-C-----------Ccee-e-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL------P-S-----------GEKS-L-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~------~-~-----------~~~~-~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++..  +.+      . .           .+.. .     +...|.+.+++.+|
T Consensus        11 lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL~~eD   90 (125)
T d1op3h1          11 LVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVED   90 (125)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeeccCCcc
Confidence            5788999999999877543  347888732  111      0 0           0000 0     11247888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|-..
T Consensus        91 TAvYYCAr~   99 (125)
T d1op3h1          91 TAIYYCARK   99 (125)
T ss_dssp             CEEEEEEEE
T ss_pred             ceeEeEeec
Confidence            999999754

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.98  E-value=0.011  Score=31.29  Aligned_cols=60  Identities=25%  Similarity=0.488  Sum_probs=39.2

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------C-C-Cce----------ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------P-S-GEK----------SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~-~-~~~----------~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++.  +..+       . . ...          ..     ....|.+.+++.+|
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~sL~~eD   90 (118)
T d2jelh1          11 LVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELARLTSED   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccccccCc
Confidence            6788999999999887543  34788873  2211       0 0 000          00     11247888999999


Q ss_pred             CeEEEEEe
Q psy7616          73 AGVYQCTA   80 (147)
Q Consensus        73 ~g~y~C~~   80 (147)
                      .+.|.|-.
T Consensus        91 TAvYYCAr   98 (118)
T d2jelh1          91 SAIYYCAR   98 (118)
T ss_dssp             CEEEEEEE
T ss_pred             ceeeeEEE
Confidence            99999954

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.98  E-value=0.0043  Score=33.19  Aligned_cols=22  Identities=14%  Similarity=0.416  Sum_probs=18.8

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.+.+++.+|+|.|.|.+..
T Consensus        79 ~~L~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          79 SILTIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EEEEECSCCGGGCSEEEEEECC
T ss_pred             ccccccccccccceeEEEEEcC
Confidence            3588899999999999997754

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.96  E-value=0.0049  Score=31.94  Aligned_cols=74  Identities=16%  Similarity=0.249  Sum_probs=40.3

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCC-C-CCceEEEecCCCCCCC---------ceeeeccceEEEeecCCCCeEE
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGN-P-VPSIIWSKKDSSLPSG---------EKSLEGFSITLEKVDRHQAGVY   76 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-~-~~~v~w~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~g~y   76 (147)
                      +|.+...++....  ..+..+.|.|.+.+. | ...|.|.+++......         ....-.+.|.+..-.. ....|
T Consensus         5 ~PsV~~l~ps~~~--~~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~y   81 (103)
T d1c5ch2           5 GPSVFPLAPSSKS--TSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTY   81 (103)
T ss_dssp             CCEEEEECCCGGG--EETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCC
T ss_pred             CCEEEEECCCchh--cCCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeE
Confidence            5666544433221  256789999998774 3 3369997766442110         0011222344443332 23569


Q ss_pred             EEEeecCC
Q psy7616          77 QCTATNGV   84 (147)
Q Consensus        77 ~C~~~~~~   84 (147)
                      .|.+.+..
T Consensus        82 tC~V~H~~   89 (103)
T d1c5ch2          82 ICNVNHKP   89 (103)
T ss_dssp             EEEEEEGG
T ss_pred             EEEEEeCC
Confidence            99998854

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.96  E-value=0.0046  Score=32.31  Aligned_cols=23  Identities=22%  Similarity=0.642  Sum_probs=19.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+...
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (107)
T d1d5il1          71 YSLTISSLEYEDMGIYYCLQYDE   93 (107)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEccccccCCcCCEEEEeeeccC
Confidence            46888999999999999987543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=95.95  E-value=0.039  Score=29.16  Aligned_cols=62  Identities=21%  Similarity=0.476  Sum_probs=40.5

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC------CC--C---------ce-ee-----eccceEEEeecCCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL------PS--G---------EK-SL-----EGFSITLEKVDRHQA   73 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~------~~--~---------~~-~~-----~~~~l~~~~~~~~~~   73 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++..  ..+      ..  .         +. .+     +...|.+.+++.+|.
T Consensus        11 ~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~eDt   90 (118)
T d1lo4h1          11 LVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRSEDT   90 (118)
T ss_dssp             EECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccCCcc
Confidence            5788999999999987643  347888742  111      00  0         00 11     112478889999999


Q ss_pred             eEEEEEeec
Q psy7616          74 GVYQCTATN   82 (147)
Q Consensus        74 g~y~C~~~~   82 (147)
                      +.|.|-...
T Consensus        91 A~YyCAr~~   99 (118)
T d1lo4h1          91 AIYYCARGT   99 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEecccC
Confidence            999996543

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=95.92  E-value=0.0048  Score=32.47  Aligned_cols=23  Identities=22%  Similarity=0.613  Sum_probs=19.4

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+...
T Consensus        75 ~~L~I~~~~~~DsA~YyCa~~~~   97 (111)
T d2gsia1          75 FTLNIHPVEEEDAATYYCSHIRE   97 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             hhcccccccccCCceEEEEECCC
Confidence            46888999999999999987544

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=95.92  E-value=0.0065  Score=31.87  Aligned_cols=23  Identities=17%  Similarity=0.430  Sum_probs=19.6

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..+.+.+++.+|+|.|.|.+...
T Consensus        70 ~~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          70 ATLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEET
T ss_pred             cceEEeeeccCCCEEEEEEecCC
Confidence            46778999999999999998654

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.91  E-value=0.013  Score=31.21  Aligned_cols=61  Identities=23%  Similarity=0.494  Sum_probs=39.8

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------CC-C----------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------PS-G----------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~~-~----------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++..  +.+       .. .          +. .+     +...|.+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~L~~eD   90 (120)
T d1ad9b1          11 VKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSSLRSED   90 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccccCCCc
Confidence            6789999999999887543  347888732  111       00 0          00 00     12247788999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|...
T Consensus        91 TAvYYCAr~   99 (120)
T d1ad9b1          91 TAFYFCARE   99 (120)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEEc
Confidence            999999654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.90  E-value=0.005  Score=32.52  Aligned_cols=23  Identities=22%  Similarity=0.667  Sum_probs=19.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|++.+++.+|+|.|.|...+.
T Consensus        77 ~~L~I~~~~~~DsavYyCa~~~~   99 (113)
T d1n4xl_          77 FTLKISRVEAEDLGIYYCFQGSH   99 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             ccCccCCCCcccCEEEEEEECCC
Confidence            47888999999999999976544

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=95.89  E-value=0.003  Score=32.75  Aligned_cols=23  Identities=22%  Similarity=0.443  Sum_probs=19.3

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+...
T Consensus        68 ~~L~I~~l~~~Dsa~YyCA~~~~   90 (103)
T d8faba1          68 VTLTISGVQAEDEADYYCQAWDN   90 (103)
T ss_dssp             EEEEETTCCGGGCEEEEEEEEET
T ss_pred             cCceEcCcchhHCceEEeeecCC
Confidence            46788999999999999987643

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.88  E-value=0.016  Score=31.07  Aligned_cols=60  Identities=23%  Similarity=0.508  Sum_probs=39.5

Q ss_pred             EEeeCCeEEEEEeecCCCCC--ceEEEec--CCCC-------CC-----------Cce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPVP--SIIWSKK--DSSL-------PS-----------GEK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~--~v~w~~~--~~~~-------~~-----------~~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|....  .+.|++.  ++.+       ..           .+. ..     ....|.+.+++.+|
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~L~~eD   89 (126)
T d1lmka1          10 LMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSSLTSED   89 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecccCCCc
Confidence            67889999999999876443  4788873  2111       00           000 10     11257888999999


Q ss_pred             CeEEEEEe
Q psy7616          73 AGVYQCTA   80 (147)
Q Consensus        73 ~g~y~C~~   80 (147)
                      .+.|.|-.
T Consensus        90 TAvYYCAr   97 (126)
T d1lmka1          90 SAVYYCAR   97 (126)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999964

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.88  E-value=0.011  Score=31.55  Aligned_cols=61  Identities=23%  Similarity=0.478  Sum_probs=39.6

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------CCC-----------ce-e-e----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------PSG-----------EK-S-L----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~~~-----------~~-~-~----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++.  +..+       ...           +. . .    ....|.+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~~eD   90 (121)
T d1ol0a_          11 LVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLRAED   90 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeeccccc
Confidence            5688999999999877542  34788873  2221       000           00 0 1    11248888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|-..
T Consensus        91 tAvYYCAr~   99 (121)
T d1ol0a_          91 TAVYYCARE   99 (121)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEEEEe
Confidence            999999654

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=95.87  E-value=0.0045  Score=32.29  Aligned_cols=22  Identities=18%  Similarity=0.489  Sum_probs=19.1

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.+.+++.+|+|.|.|.+..
T Consensus        70 ~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          70 FTLTISGLQFDDFATYHCQHYA   91 (106)
T ss_dssp             EEEEEESCCGGGCSEEEEEEEC
T ss_pred             EEEEEccccccCCCcEeeeeCC
Confidence            4688899999999999998754

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.86  E-value=0.0077  Score=30.89  Aligned_cols=22  Identities=18%  Similarity=0.308  Sum_probs=18.5

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...|.+++.+|+|.|+|.....
T Consensus        61 ~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          61 IFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             EEEECCCCTTSCEEEEEEEECT
T ss_pred             EEEeeecccCCCeEEEEeeEcC
Confidence            4677899999999999988544

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.85  E-value=0.028  Score=30.01  Aligned_cols=61  Identities=30%  Similarity=0.478  Sum_probs=39.9

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------CCC-----------ce-e-e----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------PSG-----------EK-S-L----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~~~-----------~~-~-~----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++.  ++-+       ...           +. . .    +...|.+.+++.+|
T Consensus        11 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~sL~~eD   90 (124)
T d1yedb1          11 LVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSSLKSED   90 (124)
T ss_dssp             EECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEESCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccccCCCc
Confidence            6788999999999887543  34788873  2221       000           00 0 0    11247888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|-..
T Consensus        91 TAvYYCAR~   99 (124)
T d1yedb1          91 SAVYFCTRW   99 (124)
T ss_dssp             CEEEEEEEC
T ss_pred             ceEEEeccc
Confidence            999999653

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.82  E-value=0.013  Score=28.92  Aligned_cols=50  Identities=26%  Similarity=0.469  Sum_probs=31.5

Q ss_pred             eCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEE
Q psy7616          24 KGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        24 ~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      .|..+.|.|...-  .-.|.|.+++..-.    ...++.+.+.--...++|+|+|.
T Consensus        20 ~~~~V~L~C~t~e--E~~I~W~kd~~se~----~~~GntltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          20 PGEMVVLTCDTPE--EDGITWTLDQSSEV----LGSGKTLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CCEEEEEECSSSC--CSSCEEEETTCCCC----CEESSEEEEEECSGGGCEEEEEE
T ss_pred             CccEEEEecCCCc--ccccEEeeCCcccc----ccCCCEEEEEEEeccCCcceeEe
Confidence            4567889995432  23699999875421    11334454444445688999995

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.82  E-value=0.0057  Score=31.85  Aligned_cols=22  Identities=23%  Similarity=0.669  Sum_probs=18.8

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.+.+++.+|+|.|.|.+..
T Consensus        70 ~~L~I~~~~~~Dsa~YyCa~~~   91 (106)
T d1lk3l1          70 FTLTIDPVEADDTAIYFCQQSW   91 (106)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEeEECCcChhhCCCccccccc
Confidence            5688899999999999997643

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.82  E-value=0.023  Score=30.77  Aligned_cols=62  Identities=19%  Similarity=0.488  Sum_probs=40.0

Q ss_pred             EEeeCCeEEEEEeecCCCCC--ceEEEecC--CCCC-------C-----------Cce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPVP--SIIWSKKD--SSLP-------S-----------GEK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~~--~v~w~~~~--~~~~-------~-----------~~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+....  .+.|++..  +.+.       .           .+. ..     ....|.+.+++.+|
T Consensus        10 ~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~L~~eD   89 (133)
T d1rzfh1          10 VNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRGLRSDD   89 (133)
T ss_dssp             EECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeeccCCCCC
Confidence            67899999999999875433  47788732  1110       0           000 00     12247788899999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      .+.|.|-...
T Consensus        90 tA~YYCAr~~   99 (133)
T d1rzfh1          90 TAVYYCASNS   99 (133)
T ss_dssp             CEEEEEEEEE
T ss_pred             CEEEEeeecc
Confidence            9999996543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=95.80  E-value=0.013  Score=31.51  Aligned_cols=61  Identities=18%  Similarity=0.412  Sum_probs=39.3

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------CCC-c-e----------ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------PSG-E-K----------SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~~~-~-~----------~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++..  ..+       ... . .          ..     +...|.+.+++.+|
T Consensus        11 ~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L~~eD   90 (126)
T d1dfbh1          11 LVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSLRAED   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeeeccCc
Confidence            5788999999999877543  347888732  111       000 0 0          00     11247888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|-..
T Consensus        91 tavYYCAr~   99 (126)
T d1dfbh1          91 MALYYCVKG   99 (126)
T ss_dssp             CEEEEEEEE
T ss_pred             ceEEEEEec
Confidence            999999643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=95.80  E-value=0.014  Score=31.33  Aligned_cols=62  Identities=16%  Similarity=0.421  Sum_probs=39.5

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC-------CC--C---------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL-------PS--G---------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~-------~~--~---------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++..  +.+       ..  .         +. ..     ....|.+.+++.+|
T Consensus        10 lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~eD   89 (126)
T d1rjca1          10 SVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKPED   89 (126)
T ss_dssp             EECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCGGG
T ss_pred             eECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCccc
Confidence            5789999999999877543  347888732  221       00  0         00 00     11247888999999


Q ss_pred             CeEEEEEeec
Q psy7616          73 AGVYQCTATN   82 (147)
Q Consensus        73 ~g~y~C~~~~   82 (147)
                      .+.|.|-...
T Consensus        90 TAvYYCAr~~   99 (126)
T d1rjca1          90 TAMYYCAADT   99 (126)
T ss_dssp             CEEEEEEECC
T ss_pred             CceeEEEeec
Confidence            9999997543

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.76  E-value=0.0027  Score=33.30  Aligned_cols=23  Identities=17%  Similarity=0.456  Sum_probs=19.7

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .+|.+.+++.+|+|.|.|.+...
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~~   93 (110)
T d1u3ha1          71 LSLHIADSQPGDSATYFCAASAN   93 (110)
T ss_dssp             EEEEESSCCTTSCSEEEECCEES
T ss_pred             eEeEeccCCCCCceeEeeeecCC
Confidence            46888999999999999988643

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.74  E-value=0.0041  Score=32.96  Aligned_cols=24  Identities=17%  Similarity=0.461  Sum_probs=20.2

Q ss_pred             CCceEEeecCCCCCeEEEEEeecC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..+|.+.+++.+|+|.|.|.+...
T Consensus        70 ~~~L~I~~~~~~Dsa~YyCa~~~~   93 (115)
T d1ogad1          70 DSSLHITAAQPGDTGLYLCAGAGS   93 (115)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEECT
T ss_pred             eeeeeecCCCccceeeEcccccCC
Confidence            456888999999999999988644

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.69  E-value=0.003  Score=33.17  Aligned_cols=23  Identities=22%  Similarity=0.457  Sum_probs=19.4

Q ss_pred             CCceEEeecCCCCCeEEEEEeec
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ...|.+.+++.+|+|.|.|.+..
T Consensus        70 ~~~L~I~~~~~~DSa~YyCA~~~   92 (109)
T d1mqkl_          70 QFSLKINSLLPEDFGSYYCQHHY   92 (109)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEEEccccccCCeeEEEeeeC
Confidence            34688899999999999998753

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=95.65  E-value=0.016  Score=31.30  Aligned_cols=61  Identities=20%  Similarity=0.444  Sum_probs=39.5

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCCC-------C-C----------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSLP-------S-G----------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~~-------~-~----------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++.  ++-+.       . .          +. ..     +...|.+.+++.+|
T Consensus        11 ~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~sL~~eD   90 (130)
T d1rzga1          11 VKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSSLRSED   90 (130)
T ss_dssp             EECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeeecCCCc
Confidence            5788999999999877543  35888873  22110       0 0          00 00     11137788889999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      ++.|.|-..
T Consensus        91 tA~YYCAr~   99 (130)
T d1rzga1          91 TAVFYCASP   99 (130)
T ss_dssp             CEEEEEEEC
T ss_pred             cEEEEEEEe
Confidence            999999654

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=95.64  E-value=0.021  Score=30.65  Aligned_cols=60  Identities=18%  Similarity=0.424  Sum_probs=38.3

Q ss_pred             EEeeCCeEEEEEeecCCCC----CceEEEec--CCCCC-------CC----------ce-ee-----eccceEEEeecCC
Q psy7616          21 TVRKGGTITLECKASGNPV----PSIIWSKK--DSSLP-------SG----------EK-SL-----EGFSITLEKVDRH   71 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~----~~v~w~~~--~~~~~-------~~----------~~-~~-----~~~~l~~~~~~~~   71 (147)
                      .+++|+.+.|.|.+.|...    ..+.|++.  +..+.       ..          +. ..     +...|.|.+++.+
T Consensus        11 lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~~e   90 (126)
T d1etzb1          11 ILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVDTS   90 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             eECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccccc
Confidence            6778999999999776432    23568863  22210       00          01 01     1125888899999


Q ss_pred             CCeEEEEEe
Q psy7616          72 QAGVYQCTA   80 (147)
Q Consensus        72 ~~g~y~C~~   80 (147)
                      |++.|.|-.
T Consensus        91 DtAvYyCAr   99 (126)
T d1etzb1          91 DTATYHCAR   99 (126)
T ss_dssp             GCEEEEEEE
T ss_pred             ccceEEEEE
Confidence            999999964

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.64  E-value=0.0013  Score=34.26  Aligned_cols=61  Identities=13%  Similarity=0.250  Sum_probs=33.4

Q ss_pred             eCCeEEEEEeecCC-CC---CceEEEecCCCCCCCce----ee------eccceEEEeecCCCCeEEEEEeecCC
Q psy7616          24 KGGTITLECKASGN-PV---PSIIWSKKDSSLPSGEK----SL------EGFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        24 ~g~~~~l~C~~~~~-~~---~~v~w~~~~~~~~~~~~----~~------~~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      .+....|.|.+.+. |.   ..+.|.+++........    ..      ..+.|.+..-.-.....|.|.+.+..
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            45567899998763 32   46889998876432111    11      11123222221122345999998854

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.62  E-value=0.0039  Score=32.84  Aligned_cols=23  Identities=13%  Similarity=0.466  Sum_probs=19.6

Q ss_pred             CCceEEeecCCCCCeEEEEEeec
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ...|++.+++++|+|.|.|.+.-
T Consensus        72 ~~~L~I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          72 VSTLKIQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             CEEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEEECCCCcCCCEEEEEeeeC
Confidence            35688899999999999998853

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.62  E-value=0.0084  Score=31.59  Aligned_cols=24  Identities=17%  Similarity=0.578  Sum_probs=20.4

Q ss_pred             CCceEEeecCCCCCeEEEEEeecC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...|.+.+++.+|+|.|.|.+...
T Consensus        71 ~~~L~I~~~~~~DSa~YyCa~~~~   94 (114)
T d1ogae1          71 SFPLTVTSAQKNPTAFYLCASSSR   94 (114)
T ss_dssp             BCCEEECSCCSCCCEEEEEEEESS
T ss_pred             eEEEEECcCCcCCceeEEEeeccC
Confidence            356999999999999999987644

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.62  E-value=0.0076  Score=31.76  Aligned_cols=23  Identities=26%  Similarity=0.647  Sum_probs=18.9

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|...+.
T Consensus        76 ~~L~I~~~~~eDsAvYYC~~~~~   98 (112)
T d1ncwl1          76 FTLKISRVEAEDLGVYYCWQGTH   98 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEECccccCcCEeEEEEcCCC
Confidence            46888999999999999966443

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=95.61  E-value=0.051  Score=28.98  Aligned_cols=60  Identities=17%  Similarity=0.438  Sum_probs=39.0

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEec--CCCC-------CCC-----------ce-e-e----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKK--DSSL-------PSG-----------EK-S-L----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~--~~~~-------~~~-----------~~-~-~----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++.  +..+       ...           +. . .    +...|.+.+++.+|
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~L~~eD   90 (124)
T d2b1hh1          11 VKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSSLKPSD   90 (124)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESSCCGGG
T ss_pred             eECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeecccccc
Confidence            6788999999999987543  34788873  2111       000           00 0 0    11257888999999


Q ss_pred             CeEEEEEe
Q psy7616          73 AGVYQCTA   80 (147)
Q Consensus        73 ~g~y~C~~   80 (147)
                      .+.|.|-.
T Consensus        91 TA~YYCAR   98 (124)
T d2b1hh1          91 TALYYCAR   98 (124)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEEee
Confidence            99999954

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.61  E-value=0.0082  Score=31.55  Aligned_cols=24  Identities=8%  Similarity=0.350  Sum_probs=20.4

Q ss_pred             CCceEEeecCCCCCeEEEEEeecC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        71 ~~~L~I~~~~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          71 RSEMNVSTLELGDSALYLCASSLA   94 (113)
T ss_dssp             CEEEEECSCCGGGCEEEEEEEESS
T ss_pred             eeEEEECCCCcccceeeeeeeeCC
Confidence            346888999999999999988654

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=95.57  E-value=0.006  Score=32.92  Aligned_cols=61  Identities=25%  Similarity=0.525  Sum_probs=39.5

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC------------CCC-----------ce-e-e----eccceEEEe
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL------------PSG-----------EK-S-L----EGFSITLEK   67 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~------------~~~-----------~~-~-~----~~~~l~~~~   67 (147)
                      .+++|+.+.|.|.+.|...  ..+.|++..  +.+            +..           +. . .    ....|.|.+
T Consensus        11 lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~i~~   90 (127)
T d1i3ua_          11 LVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQMNS   90 (127)
T ss_dssp             ECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEeeec
Confidence            5678999999999887543  347888732  111            000           00 0 0    112478889


Q ss_pred             ecCCCCeEEEEEee
Q psy7616          68 VDRHQAGVYQCTAT   81 (147)
Q Consensus        68 ~~~~~~g~y~C~~~   81 (147)
                      ++.+|++.|.|-..
T Consensus        91 l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          91 LKPEDTAVYYCAAK  104 (127)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccceeEEEEEEE
Confidence            99999999999654

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.53  E-value=0.0045  Score=32.83  Aligned_cols=22  Identities=18%  Similarity=0.505  Sum_probs=19.3

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        75 ~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          75 VNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEhhcCccccCEeEEEEEec
Confidence            4688899999999999998864

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.53  E-value=0.0051  Score=32.67  Aligned_cols=23  Identities=17%  Similarity=0.304  Sum_probs=19.5

Q ss_pred             ceEEeecCCCCCeEEEEEeecCC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      +|.+.+++.+|+|.|.|.+....
T Consensus        78 ~L~I~~l~~~DsavYyCa~~~~~  100 (118)
T d1yjdc1          78 TFYLQNLYVNQTDIYFCKIEVMY  100 (118)
T ss_dssp             EEEEESCCGGGCEEEEEEEEEEE
T ss_pred             EEEECCCCcccCeEEEEEEeccc
Confidence            58889999999999999876543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=95.42  E-value=0.0044  Score=32.75  Aligned_cols=22  Identities=27%  Similarity=0.635  Sum_probs=19.0

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.+.+++.+|+|.|.|.+..
T Consensus        77 ~~L~I~~l~~~Dsa~YyCA~~~   98 (113)
T d1q9ra1          77 FTLTITSVQAEDLAVYYCKQSY   98 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EeEEecccccCCCeEEEecccC
Confidence            4688899999999999998754

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=95.41  E-value=0.0045  Score=32.14  Aligned_cols=22  Identities=23%  Similarity=0.581  Sum_probs=18.7

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.+.+++.+|+|.|.|.+..
T Consensus        69 ~~L~I~~~~~~Dsa~YyCa~~~   90 (104)
T d1yqvl1          69 YSLTISSMETEDAATYYCQQWG   90 (104)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             EEEEecccCcccCCeEEEEecC
Confidence            4688899999999999997643

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=95.39  E-value=0.0012  Score=34.91  Aligned_cols=41  Identities=17%  Similarity=0.330  Sum_probs=25.4

Q ss_pred             CCceEEcCCCCceEEeeCCeEEEEEeecCCCC--CceEEEecCCC
Q psy7616           8 PPSIRTSPSNGQLTVRKGGTITLECKASGNPV--PSIIWSKKDSS   50 (147)
Q Consensus         8 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~--~~v~w~~~~~~   50 (147)
                      +|.+.+.++..  ....++.++|.|.+.+..+  ..|.|.+++..
T Consensus        12 ~P~V~l~~p~~--~~~~~~~~tL~C~v~gf~P~~i~v~W~~~~~~   54 (111)
T d1pfca_          12 IPEVYLLPPPR--NELSKKKVSLTCMITGFYPADINVEWDSSEPS   54 (111)
T ss_dssp             CCCCCBCCCCS--CCCCTTSCCEEEEEESCCSSCCEEESSSCCTT
T ss_pred             CCEEEEECCCH--HHhcCCceEEEEEEEeeECCCcEEEEeeCCCC
Confidence            45555444332  2224667889999988532  46999877643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=95.39  E-value=0.0046  Score=32.32  Aligned_cols=22  Identities=18%  Similarity=0.513  Sum_probs=18.8

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.+.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          71 YSLTISNLEPEDIATYFCQHHI   92 (107)
T ss_dssp             EEEECSCCCSCCCSEEEEEECS
T ss_pred             EEEEEeEeeecCCCcEEeeeCC
Confidence            4688899999999999997653

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=95.34  E-value=0.014  Score=30.79  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.2

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.+.+++.+|++.|.|.+..
T Consensus        72 ~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          72 ASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eeeEecccCcccCceEEEeecC
Confidence            4688899999999999998864

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=95.32  E-value=0.0057  Score=32.11  Aligned_cols=23  Identities=22%  Similarity=0.423  Sum_probs=19.7

Q ss_pred             CCceEEeecCCCCCeEEEEEeec
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..+|.+.+++.+|+|.|.|.+..
T Consensus        71 ~~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          71 HLSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEEECCCcccccEEEEeeccC
Confidence            45688899999999999998764

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=95.30  E-value=0.0074  Score=31.60  Aligned_cols=24  Identities=25%  Similarity=0.610  Sum_probs=20.1

Q ss_pred             CCceEEeecCCCCCeEEEEEeecC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...|.+.+++.+|+|.|.|.+...
T Consensus        71 ~~~L~i~~~~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          71 SFHLQKASVQESDSAVYYCALSGG   94 (110)
T ss_dssp             BCCEEEEEECGGGCEEEEEEEEET
T ss_pred             EEeeeecCcCcCCCcccceeecCC
Confidence            456788999999999999988643

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0069  Score=32.14  Aligned_cols=23  Identities=17%  Similarity=0.439  Sum_probs=19.8

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.+...
T Consensus        75 ~~L~I~~l~~~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          75 VNLTIQGLRAMDTGLYICKVELM   97 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEE
T ss_pred             EEEEeeccccCCCEEEEEeEecc
Confidence            46888999999999999988654

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=95.14  E-value=0.042  Score=29.62  Aligned_cols=61  Identities=23%  Similarity=0.487  Sum_probs=39.1

Q ss_pred             EEeeCCeEEEEEeecCCCC--CceEEEecC--CCC------C----C-C---------ce-e-----eeccceEEEeecC
Q psy7616          21 TVRKGGTITLECKASGNPV--PSIIWSKKD--SSL------P----S-G---------EK-S-----LEGFSITLEKVDR   70 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~--~~v~w~~~~--~~~------~----~-~---------~~-~-----~~~~~l~~~~~~~   70 (147)
                      .+++|+.+.|.|.+.+...  ..+.|++..  +.+      .    . .         +. .     .+...|.+.+++.
T Consensus        11 ~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~~L~~   90 (131)
T d3c2ah1          11 LVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMNSLKT   90 (131)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEECSCCG
T ss_pred             eECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeecceecccc
Confidence            6789999999999876543  347788732  111      0    0 0         00 0     0112478889999


Q ss_pred             CCCeEEEEEee
Q psy7616          71 HQAGVYQCTAT   81 (147)
Q Consensus        71 ~~~g~y~C~~~   81 (147)
                      +|.+.|.|-..
T Consensus        91 eDTAvYYCAR~  101 (131)
T d3c2ah1          91 EDTAVYSCTTD  101 (131)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCceEEEEecc
Confidence            99999999643

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=95.10  E-value=0.014  Score=30.64  Aligned_cols=21  Identities=29%  Similarity=0.786  Sum_probs=17.9

Q ss_pred             CceEEeecCCCCCeEEEEEee
Q psy7616         111 FSITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      ..|.+.+++.+|++.|.|...
T Consensus        76 ~~L~Is~~~~~DsAvYyCa~~   96 (112)
T d1mjul1          76 FTLRISRVEAEDVGVYYCLQH   96 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EEEEECCccccCCceEEEEeC
Confidence            468889999999999999654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=95.10  E-value=0.01  Score=31.13  Aligned_cols=24  Identities=29%  Similarity=0.635  Sum_probs=20.2

Q ss_pred             CCceEEeecCCCCCeEEEEEeecC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...|.+.+++.+|+|.|.|.+...
T Consensus        72 ~~~L~i~~~~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          72 RFSLILESASTNQTSMYLCASSST   95 (113)
T ss_dssp             BCEEEESSCCGGGCEEEEEEEECT
T ss_pred             EeeeEeccCccCCcccEEeeEccC
Confidence            356888999999999999998653

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=95.06  E-value=0.028  Score=30.15  Aligned_cols=60  Identities=18%  Similarity=0.395  Sum_probs=39.6

Q ss_pred             EEeeCCeEEEEEeecCCCC---CceEEEec--CCCC------------------CCCceee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNPV---PSIIWSKK--DSSL------------------PSGEKSL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~~---~~v~w~~~--~~~~------------------~~~~~~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+...   ..+.|++.  ++.+                  .......     +...|.+.+++.+|
T Consensus        11 lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~eD   90 (127)
T d3cx5j1          11 LVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTTED   90 (127)
T ss_dssp             EECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccccc
Confidence            5788999999999887543   34789873  2211                  0000001     11258888999999


Q ss_pred             CeEEEEEe
Q psy7616          73 AGVYQCTA   80 (147)
Q Consensus        73 ~g~y~C~~   80 (147)
                      .+.|.|-.
T Consensus        91 tAvYyCAr   98 (127)
T d3cx5j1          91 TATYYCAR   98 (127)
T ss_dssp             CEEEEEEE
T ss_pred             ceEEEeee
Confidence            99999964

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=95.06  E-value=0.013  Score=29.25  Aligned_cols=58  Identities=5%  Similarity=-0.054  Sum_probs=31.2

Q ss_pred             CeEEEEEeecCCCC--CceEEEecCCCCCCCcee--eecc-ceEEEeecCCCCeEEEEEeecC
Q psy7616          26 GTITLECKASGNPV--PSIIWSKKDSSLPSGEKS--LEGF-SITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        26 ~~~~l~C~~~~~~~--~~v~w~~~~~~~~~~~~~--~~~~-~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      +..+|.|.+.+..+  ..|.|.+++.........  ...+ ...+..........|.|.+.+.
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~~~~yTC~V~H~   76 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDSNSVTCSVQHD   76 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETTTTTCEEEEEET
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCCCCEEEEEEEEC
Confidence            34579999988643  358899887644221111  1111 1112222223344699998875

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=94.95  E-value=0.007  Score=31.89  Aligned_cols=25  Identities=12%  Similarity=0.397  Sum_probs=20.4

Q ss_pred             CceEEeecCCCCCeEEEEEeecCCC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      ..|++.+++.+|+|.|.|.+....+
T Consensus        74 ~~L~I~~~~~~Dsa~YyCa~~~~~~   98 (113)
T d1nfdb1          74 SEMNMSALELEDSAMYFCASSLRWG   98 (113)
T ss_dssp             EEEECCSCCGGGCEEECEEEESSSC
T ss_pred             EEEEecccCcCCceeEEEEeecCCC
Confidence            4678899999999999998765433

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=94.92  E-value=0.019  Score=30.37  Aligned_cols=61  Identities=26%  Similarity=0.472  Sum_probs=38.5

Q ss_pred             EEeeCCeEEEEEeecCCC--CCceEEEec--CCCC-------CC--C---------ce-ee-----eccceEEEeecCCC
Q psy7616          21 TVRKGGTITLECKASGNP--VPSIIWSKK--DSSL-------PS--G---------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        21 ~~~~g~~~~l~C~~~~~~--~~~v~w~~~--~~~~-------~~--~---------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+++|+.+.|.|.+.+..  ...+.|++.  +..+       ..  .         +. ..     ....|.+.+++.+|
T Consensus        11 ~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL~~eD   90 (117)
T d1b2wh1          11 VVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSLRPED   90 (117)
T ss_dssp             EECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSCCGGG
T ss_pred             eECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccccCCc
Confidence            678999999999986542  334677773  2111       00  0         00 00     11247888999999


Q ss_pred             CeEEEEEee
Q psy7616          73 AGVYQCTAT   81 (147)
Q Consensus        73 ~g~y~C~~~   81 (147)
                      .+.|.|-..
T Consensus        91 TAvYYCAr~   99 (117)
T d1b2wh1          91 TAVYYCARG   99 (117)
T ss_dssp             CEEEECCEE
T ss_pred             ceEEEEccc
Confidence            999999543

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.91  E-value=0.078  Score=26.07  Aligned_cols=53  Identities=23%  Similarity=0.432  Sum_probs=34.1

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      ...+.|.|..   ....+.|++++..+....  .....+-+-+....--|.|.|.+..
T Consensus        22 dGsV~L~Cn~---~~k~i~W~kdg~~i~~~~--~~~ktlnLG~~~~DPRGiY~C~g~~   74 (86)
T d1jbja1          22 DGSVLLTCGL---TDKTIKWLKDGSIISPLN--ATKNTWNLGNNAKDPRGTYQCQGAK   74 (86)
T ss_dssp             SCEEEEECSS---SCSCEEEEETTEECCCSS--CCSSCCEEEETTSCCEEEEEEEESS
T ss_pred             CCeEEEEeCC---CCcEEEEecCCceecccc--cccceeecCCcccCCCcceEcCCCc
Confidence            4578999954   335899999986653211  1223455555556667999997644

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.82  E-value=0.023  Score=29.23  Aligned_cols=63  Identities=16%  Similarity=0.267  Sum_probs=34.5

Q ss_pred             EeeCCeEEEEEeecCC-CC---CceEEEecCCCCCCCce----eee------ccceEEEeecCCCCeEEEEEeecCC
Q psy7616          22 VRKGGTITLECKASGN-PV---PSIIWSKKDSSLPSGEK----SLE------GFSITLEKVDRHQAGVYQCTATNGV   84 (147)
Q Consensus        22 ~~~g~~~~l~C~~~~~-~~---~~v~w~~~~~~~~~~~~----~~~------~~~l~~~~~~~~~~g~y~C~~~~~~   84 (147)
                      +..+...+|.|.+.+. |.   ..+.|.+++........    ...      .+.|.+..-.-.....|.|.+.+..
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            4456778999998774 32   25678887766532211    111      1122222222223457999998853

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.032  Score=28.25  Aligned_cols=40  Identities=8%  Similarity=0.268  Sum_probs=32.9

Q ss_pred             ccCCceEEeecCCCCCeEEEEEeecCCCCC-cCeeeEEEEC
Q psy7616         108 LEGFSITLEKVDRHQAGVYQCTATNGVGDP-VTVDMTLEVL  147 (147)
Q Consensus       108 ~~~~~~~l~~~~~~d~G~Y~C~a~n~~g~~-~~~~~~l~V~  147 (147)
                      ...++|.+.++...|+|.|.-.+-+.-|.. -..++.|.|+
T Consensus        60 ~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          60 FKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             ccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            457789999999999999999999998877 4556777663

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=94.76  E-value=0.02  Score=29.94  Aligned_cols=22  Identities=27%  Similarity=0.540  Sum_probs=19.4

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.+.+++.+|+|.|.|.+..
T Consensus        72 ~~L~I~~~~~~DsavYyCA~~~   93 (112)
T d2bnub1          72 FPLRLLSAAPSQTSVYFCASSY   93 (112)
T ss_dssp             CCEEESSCCGGGCEEEEEEEEC
T ss_pred             EEEEECCCCHHHCEEEEEeecC
Confidence            4789999999999999998764

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=94.74  E-value=0.011  Score=31.03  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=19.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        69 ~~L~i~~~~~~Dsa~YyCa~~~~   91 (112)
T d1kgcd1          69 STLILHRATLRDAAVYYCILPLA   91 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEECCCC
T ss_pred             eEEEEeecccccceeEeeeEecC
Confidence            46888999999999999987544

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.62  E-value=0.0097  Score=31.70  Aligned_cols=22  Identities=18%  Similarity=0.534  Sum_probs=19.0

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..|.+.+++.+|+|.|.|.+..
T Consensus        71 ~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          71 YTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             EEEEECSCCGGGCSEEEEEEES
T ss_pred             EEEEcccCccCCCeEEEeeccC
Confidence            4688899999999999998754

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.43  E-value=0.12  Score=26.10  Aligned_cols=40  Identities=10%  Similarity=0.277  Sum_probs=31.1

Q ss_pred             eeeccceEEEeecCCCCeEEEEEeecCCCCce-EEeEEEEE
Q psy7616          57 SLEGFSITLEKVDRHQAGVYQCTATNGVGDPV-TVDMTLEV   96 (147)
Q Consensus        57 ~~~~~~l~~~~~~~~~~g~y~C~~~~~~~~~~-~~~~~l~v   96 (147)
                      ...+++|.|..+.+.|+|.|...+.+..|... ...+.|.+
T Consensus        59 i~~nGtLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI   99 (101)
T d1hnfa1          59 LFKNGTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI   99 (101)
T ss_dssp             ECTTSCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             EccCCcEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEe
Confidence            45678999999999999999999998887752 34444443

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=94.28  E-value=0.014  Score=30.39  Aligned_cols=22  Identities=14%  Similarity=0.394  Sum_probs=18.9

Q ss_pred             CceEEeecCCCCCeEEEEEeec
Q psy7616         111 FSITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      ..+.+.+++.+|+|.|.|.+..
T Consensus        69 ~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          69 ATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             EEEEETTCCGGGCSEEEEEEEE
T ss_pred             eeeeEcCccccCCceEEEEeec
Confidence            4677899999999999998764

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=94.17  E-value=0.025  Score=30.06  Aligned_cols=23  Identities=13%  Similarity=0.294  Sum_probs=19.5

Q ss_pred             CceEEeecCCCCCeEEEEEeecC
Q psy7616         111 FSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       111 ~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ..|.+.+++.+|+|.|.|.....
T Consensus        75 ~~L~i~~~~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          75 AVLKILAPSERDEGSYYCACDTL   97 (120)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECC
T ss_pred             eecccccccccCCceeecCcccC
Confidence            46788999999999999987654

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.0016  Score=33.75  Aligned_cols=41  Identities=15%  Similarity=0.346  Sum_probs=26.3

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCC--CC-CceEEEecCCC
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGN--PV-PSIIWSKKDSS   50 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~--~~-~~v~w~~~~~~   50 (147)
                      |.+.+.+++ ...+..++.++|.|.+.+.  |. ..|.|.+++..
T Consensus         3 P~V~l~~Ps-~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~   46 (101)
T d1ow0a1           3 PRLSLHRPA-LEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGK   46 (101)
T ss_dssp             CCCEEECCC-HHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSC
T ss_pred             CEEEEECCC-HHHHccCCCeEEEEEEeCCCCCcceEEEEEECCce
Confidence            445444432 1134467889999999875  32 36999987754

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.77  E-value=0.15  Score=24.77  Aligned_cols=53  Identities=23%  Similarity=0.465  Sum_probs=33.9

Q ss_pred             CCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616          25 GGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        25 g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      ...+.|.|..   ...++.|++++..+..  .......+-+-+....--|.|.|....
T Consensus        17 dg~V~L~Cn~---~~k~i~W~kdg~~i~~--~~~~~ktlnLG~~~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          17 DGSVLLTCDA---EAKNITWFKDGKMIGF--LTEDKKKWNLGSNAKDPRGMYQCKGSQ   69 (81)
T ss_dssp             SSEEEEEECS---CSSEEEEEETTEEEEE--EESSCCCEEEEEGGGCCEEEEEEESSS
T ss_pred             CCeEEEEeCC---CCcEEEEecCCeEeec--ccCCcceeecCCcccCCCcceEcCCCC
Confidence            4578999943   4458999999854321  111234555666666667999997644

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.67  E-value=0.054  Score=28.52  Aligned_cols=19  Identities=21%  Similarity=0.478  Sum_probs=16.5

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.|++++.+|++.|.|..
T Consensus        80 ~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          80 FMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeeeecCcCCcEEEEEec
Confidence            4777899999999999964

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.38  E-value=0.0012  Score=35.15  Aligned_cols=76  Identities=11%  Similarity=0.134  Sum_probs=40.9

Q ss_pred             CceEEcCCCCceEEeeCCeEEEEEeecCCCC----CceEEEecCCCCCCCce----------eeeccceEEEeecCCCCe
Q psy7616           9 PSIRTSPSNGQLTVRKGGTITLECKASGNPV----PSIIWSKKDSSLPSGEK----------SLEGFSITLEKVDRHQAG   74 (147)
Q Consensus         9 p~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~----~~v~w~~~~~~~~~~~~----------~~~~~~l~~~~~~~~~~g   74 (147)
                      |.+...++...-.+..+..++|.|.+.+..+    ..+.|.+++........          ..-.+.|.+..-.-....
T Consensus        13 p~V~i~pPs~~e~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~   92 (116)
T d1igyb3          13 SSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGK   92 (116)
T ss_dssp             CCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTC
T ss_pred             CEEEEECcChHHhcccCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEcccEECCCCCEEEEEEEEECHHHhCCCC
Confidence            5555555432112446888999999987532    24678887755421110          111223443332222345


Q ss_pred             EEEEEeecCC
Q psy7616          75 VYQCTATNGV   84 (147)
Q Consensus        75 ~y~C~~~~~~   84 (147)
                      .|+|.+.+..
T Consensus        93 ~ytC~V~H~~  102 (116)
T d1igyb3          93 EFKCRVNSAA  102 (116)
T ss_dssp             CCBCCBCCSS
T ss_pred             EEEEEEEeCC
Confidence            6999998754

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=93.25  E-value=0.041  Score=29.19  Aligned_cols=19  Identities=32%  Similarity=0.604  Sum_probs=16.0

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.|.+++.+|++.|.|..
T Consensus        79 ~L~i~~l~~eDtA~YYCAr   97 (120)
T d1dn0b1          79 SLKLSSVTAADTAVYYCAR   97 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             cccccccccccccEEEEEe
Confidence            3677899999999999943

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=93.03  E-value=0.11  Score=27.46  Aligned_cols=20  Identities=15%  Similarity=0.512  Sum_probs=17.1

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.|++++.+|++.|.|...
T Consensus        80 ~L~i~~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          80 YLEFSRLTSDDSAVYYCAIH   99 (119)
T ss_dssp             EEEEEEECGGGCEEEEEEEC
T ss_pred             eeeecccCccceeEEEEEEe
Confidence            47778999999999999654

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=92.79  E-value=0.064  Score=28.48  Aligned_cols=21  Identities=29%  Similarity=0.566  Sum_probs=17.6

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.|.+++.+|++.|.|....
T Consensus        81 ~L~i~~l~~eDsAvYyCAr~~  101 (120)
T d2agjh1          81 VLTLTNLDPVDTATYYCARTS  101 (120)
T ss_dssp             EEEEESCCGGGCEEEEEEEEC
T ss_pred             eeeEEeeeeccceEEeeEecC
Confidence            477789999999999997543

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.91  E-value=0.075  Score=27.37  Aligned_cols=23  Identities=17%  Similarity=0.307  Sum_probs=15.6

Q ss_pred             ceEEeecCCCCCeEEEEEeecCC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGV  134 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~  134 (147)
                      .|.+++++.+|.+.|.|......
T Consensus        67 ~L~~~sL~~eDTAvYYCAr~~~~   89 (103)
T d1oari_          67 YMQLSSLTSEDSAVYYCARMWYY   89 (103)
T ss_dssp             EEEECCC---CCSEEEEEEEECS
T ss_pred             EeeeeeccccccEEEEeEEECCC
Confidence            46778999999999999765443

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.074  Score=26.96  Aligned_cols=25  Identities=16%  Similarity=0.311  Sum_probs=20.5

Q ss_pred             cCCceEEeecCCCCCeEEEEEeecC
Q psy7616         109 EGFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       109 ~~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...-+++.+++..|+|.|.|.|...
T Consensus        57 pk~Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          57 SRKGFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             TTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEeCCCcccCeEEEEEEEEC
Confidence            3445777899999999999999765

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=91.39  E-value=0.11  Score=27.44  Aligned_cols=24  Identities=13%  Similarity=0.458  Sum_probs=19.0

Q ss_pred             ceEEeecCCCCCeEEEEEeecCCC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNGVG  135 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~~g  135 (147)
                      .|.+++++.+|++.|.|......+
T Consensus        78 ~L~i~~L~~eDtA~YYCAr~~~~~  101 (119)
T d1kxvc_          78 YLQMDSLKPDDTAMYYCKPSLRYG  101 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEEEESSC
T ss_pred             ecccccCCcCCcceEeeeeccccC
Confidence            467789999999999997654433

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=91.36  E-value=0.054  Score=28.55  Aligned_cols=20  Identities=15%  Similarity=0.484  Sum_probs=16.6

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.|.+++.+|.+.|.|...
T Consensus        80 yL~m~~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          80 YLQMNSLRAEDTAVYYCARD   99 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EecccccCCCCceEEEEeec
Confidence            36668999999999999654

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=91.33  E-value=0.055  Score=28.58  Aligned_cols=18  Identities=11%  Similarity=0.501  Sum_probs=15.6

Q ss_pred             ceEEeecCCCCCeEEEEE
Q psy7616         112 SITLEKVDRHQAGVYQCT  129 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~  129 (147)
                      .|.+.+++.+|++.|.|.
T Consensus        80 yL~~~~L~~eDtAvYYCA   97 (118)
T d1nlbh1          80 YLQINSLKNEDTATYFCA   97 (118)
T ss_dssp             EEEECSCCGGGCEEEEEE
T ss_pred             EeeeeecccCcceEEEEe
Confidence            466789999999999994

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.23  E-value=0.23  Score=26.18  Aligned_cols=20  Identities=25%  Similarity=0.547  Sum_probs=16.9

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.|.+++.+|.+.|.|...
T Consensus        80 yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          80 YLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEEC
T ss_pred             EeeeeccCcccceEEEEeec
Confidence            46678999999999999664

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=91.10  E-value=0.11  Score=27.41  Aligned_cols=22  Identities=18%  Similarity=0.421  Sum_probs=18.1

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.|.+++.+|++.|.|.....
T Consensus        80 ~L~~~sL~~eDtAvYYCAr~~~  101 (118)
T d2fbjh1          80 YLQMSKVRSEDTALYYCARLHY  101 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEEET
T ss_pred             eccccccCCCcceEEEeeEecC
Confidence            3667899999999999986554

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=91.03  E-value=0.092  Score=27.67  Aligned_cols=22  Identities=18%  Similarity=0.469  Sum_probs=18.4

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.|++++.+|++.|.|.....
T Consensus        80 ~L~i~~L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          80 YMELSSLRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEECSS
T ss_pred             EEeecccCcCcceEEEEeEcCC
Confidence            4677899999999999987544

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=90.75  E-value=0.16  Score=26.28  Aligned_cols=24  Identities=8%  Similarity=0.242  Sum_probs=20.1

Q ss_pred             ccceEEEeecCCCCeEEEEEeecC
Q psy7616          60 GFSITLEKVDRHQAGVYQCTATNG   83 (147)
Q Consensus        60 ~~~l~~~~~~~~~~g~y~C~~~~~   83 (147)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        71 ~~~L~i~~~~~~Dsg~YyCa~~~~   94 (113)
T d2bnqd1          71 RSTLYIAASQPGDSATYLCAVRPT   94 (113)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEES
T ss_pred             EEEeeeecCCCCCCcEEeEeEecC
Confidence            336999999999999999987643

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=90.59  E-value=0.12  Score=27.42  Aligned_cols=21  Identities=14%  Similarity=0.445  Sum_probs=17.4

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.|++++.+|++.|.|....
T Consensus        80 ~L~i~sL~~eDtAvYYCAr~~  100 (121)
T d1ol0a_          80 YLQMNSLRAEDTAVYYCAREP  100 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEECC
T ss_pred             EeeeeecccccceEEEEEEec
Confidence            467789999999999997543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.51  E-value=0.23  Score=26.08  Aligned_cols=20  Identities=15%  Similarity=0.508  Sum_probs=17.0

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.|++++.+|.+.|.|...
T Consensus        79 ~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          79 FLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEEC
T ss_pred             eccccccccCcceEEEEecc
Confidence            46778999999999999654

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=90.48  E-value=0.14  Score=27.17  Aligned_cols=21  Identities=19%  Similarity=0.428  Sum_probs=17.3

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.+.+++.+|++.|.|....
T Consensus        81 yL~~~~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          81 YMGLSSLRPEDTAVYYCARDP  101 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEEET
T ss_pred             eecccccCCCcceEEEEeecC
Confidence            366789999999999997653

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=90.43  E-value=0.13  Score=27.00  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=17.9

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.|++++.+|++.|.|.....
T Consensus        79 ~L~i~~L~~eDtAvYyCAr~~~  100 (116)
T d7fabh1          79 SLRLSSVTAADTAVYYCARNLI  100 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEEECS
T ss_pred             hccccccccccceEEEeeeecC
Confidence            4677899999999999976433

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.41  E-value=0.14  Score=26.94  Aligned_cols=22  Identities=18%  Similarity=0.416  Sum_probs=17.5

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.|++++.+|.+.|.|.....
T Consensus        79 ~L~~~~L~~eDTAvYyCAr~~~  100 (116)
T d1fn4b1          79 FLKMNSLQTDDTGTYYCTRDLY  100 (116)
T ss_dssp             ECCEESCCCCCCEEEEEEEECS
T ss_pred             hcceeccCCCCCEEEEEEeecC
Confidence            3566899999999999965443

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=90.12  E-value=0.083  Score=27.81  Aligned_cols=20  Identities=10%  Similarity=0.398  Sum_probs=17.2

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.+++++.+|.+.|.|.-.
T Consensus        79 ~L~~~~l~~eDTAvYYCAr~   98 (116)
T d1a2yb_          79 FLKMNSLHTDDTARYYCARE   98 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EcceeeeeeccceEEEEEEe
Confidence            47778999999999999754

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.05  E-value=0.12  Score=26.65  Aligned_cols=21  Identities=19%  Similarity=0.238  Sum_probs=15.6

Q ss_pred             ecCCCCCe-EEEEEeecCCCCC
Q psy7616         117 KVDRHQAG-VYQCTATNGVGDP  137 (147)
Q Consensus       117 ~~~~~d~G-~Y~C~a~n~~g~~  137 (147)
                      .++.+|.| .|+|.|++..+..
T Consensus        69 ~~~~~D~g~~ltC~a~~~~~~~   90 (109)
T d1vcaa1          69 TPVIEDIGKVLVCRAKLHIDEM   90 (109)
T ss_dssp             CCCGGGTTCEEEEEEEECSCCC
T ss_pred             cCChHHCCcEEEEEEEcCcCCc
Confidence            45556665 8999999997554

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=90.03  E-value=0.098  Score=27.56  Aligned_cols=19  Identities=21%  Similarity=0.600  Sum_probs=16.2

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.|++++.+|.+.|.|..
T Consensus        80 yLq~~~L~~eDTAvYYCAr   98 (117)
T d1jnhb1          80 YLQLNSLTSEDSAVYSCSR   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             eecccccCCCcceEEEEee
Confidence            3667899999999999965

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=90.00  E-value=0.17  Score=27.02  Aligned_cols=22  Identities=18%  Similarity=0.528  Sum_probs=18.2

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.+++++.+|++.|.|.....
T Consensus        85 ~L~i~~l~~eDtAvYYCAr~~~  106 (127)
T d1i3ua_          85 NLQMNSLKPEDTAVYYCAAKTT  106 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEESC
T ss_pred             EEeeecccccceeEEEEEEEee
Confidence            4667899999999999986544

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.96  E-value=0.16  Score=26.86  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=17.6

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.|++++.+|++.|.|....
T Consensus        80 ~L~i~~L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          80 YLQLTSLTSEDTAVYYCAPFG  100 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEEEB
T ss_pred             eecccccCcCcceEEEeEeec
Confidence            467789999999999997644

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=89.93  E-value=0.17  Score=26.85  Aligned_cols=22  Identities=14%  Similarity=0.415  Sum_probs=17.6

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.+++++.+|.+.|.|.....
T Consensus        80 yL~m~sL~~eDTAvYYCAr~~~  101 (122)
T d1bz7b1          80 FLQMTSLRSEDTAIYYCTRGGT  101 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEEECC
T ss_pred             EeeeeeecccCceEEEeecCCC
Confidence            4666899999999999976443

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=89.88  E-value=0.096  Score=27.75  Aligned_cols=20  Identities=25%  Similarity=0.479  Sum_probs=16.9

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.|.+++.+|++.|.|...
T Consensus        81 ~L~~~sL~~eDtAvYYCAr~  100 (120)
T d1ai1h1          81 FIQLISVTNEDTAMYYCSRE  100 (120)
T ss_dssp             EEEESSCCGGGCEEEEEEEE
T ss_pred             ecceeeeeccceeEEEEEec
Confidence            46778999999999999754

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=89.85  E-value=0.093  Score=27.19  Aligned_cols=20  Identities=15%  Similarity=0.501  Sum_probs=17.0

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.|++++.+|++.|.|...
T Consensus        72 ~L~i~~l~~eDtAvYyCA~~   91 (107)
T d1sjva_          72 YLEMNSLEPEDTAVYYCYTH   91 (107)
T ss_dssp             EEEECSCCGGGCSEEEEEEC
T ss_pred             EEeecCCCcccceeeeEecc
Confidence            46778999999999999753

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.83  E-value=0.1  Score=27.48  Aligned_cols=19  Identities=26%  Similarity=0.565  Sum_probs=16.2

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.|++++.+|++.|.|.-
T Consensus        80 ~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          80 YMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeecccCCCcceEEEEec
Confidence            4677899999999999964

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=89.83  E-value=0.48  Score=25.48  Aligned_cols=21  Identities=14%  Similarity=0.468  Sum_probs=17.4

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.|.+++.+|.+.|.|.-..
T Consensus        80 yL~i~~L~~eDTAvYYCAr~~  100 (135)
T d1ieha_          80 YLQMNSLKSEDTAVYYCAKYS  100 (135)
T ss_dssp             EEEEESCCSSSCEEEEEEEBS
T ss_pred             EecEeeeCcccceeeEEEEec
Confidence            466789999999999997543

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=89.81  E-value=0.14  Score=27.25  Aligned_cols=22  Identities=23%  Similarity=0.573  Sum_probs=17.7

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.+++++.+|++.|.|.....
T Consensus        79 yLq~~sL~~eDtAvYYCAr~~~  100 (124)
T d1zvya1          79 YLRMDSVKSEDTAIYTCGATRK  100 (124)
T ss_dssp             EEEECSCCGGGCEEEEEEECSS
T ss_pred             eceeccccCCcceEEEEeeccc
Confidence            4566899999999999976543

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.60  E-value=0.18  Score=26.66  Aligned_cols=22  Identities=23%  Similarity=0.455  Sum_probs=17.8

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.+.+++.+|++.|.|.....
T Consensus        80 ~L~i~~l~~eDtA~YYCAr~~~  101 (120)
T d1pg7x1          80 YIELVRLTSNDSAVYYCAREDF  101 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEECC
T ss_pred             EccccccCCCcceEEEeeecCC
Confidence            4667899999999999986433

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=89.58  E-value=0.21  Score=26.59  Aligned_cols=22  Identities=9%  Similarity=0.380  Sum_probs=17.8

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.|.+++.+|++.|.|.....
T Consensus        80 ~L~~~~L~~eDtavYYCAr~~~  101 (126)
T d1dfbh1          80 YLQMNSLRAEDMALYYCVKGRD  101 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEC
T ss_pred             EeeeeeeccCcceEEEEEeccC
Confidence            3666899999999999976543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=89.44  E-value=0.11  Score=27.46  Aligned_cols=20  Identities=15%  Similarity=0.497  Sum_probs=16.7

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.+.+++.+|++.|.|...
T Consensus        80 yLq~~~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          80 YLQMDSLKPEDTATYYCAAG   99 (121)
T ss_dssp             EEEECSCCGGGCEEEEEEES
T ss_pred             EEEeeeccccceeEEeeecc
Confidence            36668999999999999753

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.44  E-value=0.098  Score=27.93  Aligned_cols=21  Identities=19%  Similarity=0.463  Sum_probs=17.2

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.|++++.+|++.|.|....
T Consensus        80 yL~l~sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          80 FMYLNSLTSEDSAVYYCARES  100 (125)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             eeeeeccCcccceEEEEeeeC
Confidence            366689999999999997543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.28  E-value=0.1  Score=27.49  Aligned_cols=19  Identities=16%  Similarity=0.569  Sum_probs=16.0

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.|++++.+|++.|.|.-
T Consensus        80 ~L~~~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          80 YMELARLTSEDSAIYYCAR   98 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             eecccccccCcceeeeEEE
Confidence            4667899999999999943

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=89.27  E-value=0.19  Score=26.66  Aligned_cols=21  Identities=10%  Similarity=0.441  Sum_probs=17.4

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.|.+++.+|++.|.|....
T Consensus        80 ~L~i~~L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          80 YLQMSSLKSEDTAMYYCVRHE  100 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             ccceeeeccCcccceeEEecC
Confidence            466789999999999997654

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.23  E-value=0.12  Score=27.10  Aligned_cols=19  Identities=21%  Similarity=0.539  Sum_probs=16.0

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.|.+++.+|.+.|.|.-
T Consensus        80 yL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          80 YMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EecccccCCCCceEEEEcc
Confidence            4566899999999999964

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=89.09  E-value=0.49  Score=24.30  Aligned_cols=24  Identities=17%  Similarity=0.299  Sum_probs=19.9

Q ss_pred             CCceEEeecCCCCCeEEEEEeecC
Q psy7616         110 GFSITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       110 ~~~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      ...+.|...+.+|++.|.|.....
T Consensus        73 ~~~l~l~~~~~~dsa~Y~Ca~~~~   96 (112)
T d1fo0b_          73 DTELRLQVANMSQGRTLYCTCSAD   96 (112)
T ss_dssp             TTEEEEEEESCCSCEEEEEEEESS
T ss_pred             ccEEEEecCCccCCccEEEEEecC
Confidence            456888999999999999986543

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=89.05  E-value=0.13  Score=27.20  Aligned_cols=19  Identities=21%  Similarity=0.522  Sum_probs=16.3

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.|.+++.+|.+.|.|..
T Consensus        80 ~L~~~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          80 YMQLNSLTSEDSAVYFCKR   98 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeeecccCCcceEEEEEE
Confidence            4667899999999999954

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=88.99  E-value=0.13  Score=27.41  Aligned_cols=20  Identities=15%  Similarity=0.519  Sum_probs=17.0

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.+.+++.+|++.|.|...
T Consensus        81 ~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          81 FLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EcceeecccccceEEeeccc
Confidence            47778999999999999753

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=88.99  E-value=0.2  Score=26.79  Aligned_cols=22  Identities=23%  Similarity=0.634  Sum_probs=17.7

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.|++++.+|.+.|.|.....
T Consensus        80 yL~~~~L~~eDTA~YYCAr~~~  101 (127)
T d2fb4h1          80 FLQMDSLRPEDTGVYFCARDGG  101 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEECS
T ss_pred             EeeeeeeeecceeEEEEEEecC
Confidence            4667899999999999976543

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=88.83  E-value=0.14  Score=27.06  Aligned_cols=20  Identities=10%  Similarity=0.438  Sum_probs=16.6

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.|.+++.+|.+.|.|.-.
T Consensus        80 yL~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          80 YMQFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EecccccCCCcceEEEEeee
Confidence            45668999999999999654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=88.71  E-value=0.14  Score=26.80  Aligned_cols=19  Identities=16%  Similarity=0.524  Sum_probs=16.4

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.+++++.+|++.|.|..
T Consensus        80 ~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          80 YLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             EEEECSCCGGGCEEEEEEC
T ss_pred             eeeeeeeccCcccEEEECC
Confidence            3677899999999999964

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.68  E-value=0.12  Score=27.75  Aligned_cols=19  Identities=16%  Similarity=0.536  Sum_probs=16.2

Q ss_pred             eEEeecCCCCCeEEEEEee
Q psy7616         113 ITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       113 ~~l~~~~~~d~G~Y~C~a~  131 (147)
                      |.|++++.+|++.|.|...
T Consensus        81 L~~~sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          81 MELSSLRSEDTAVFYCASP   99 (130)
T ss_dssp             EEECSCCGGGCEEEEEEEC
T ss_pred             eeeeecCCCccEEEEEEEe
Confidence            5668999999999999753

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=88.59  E-value=0.12  Score=27.16  Aligned_cols=20  Identities=20%  Similarity=0.536  Sum_probs=16.7

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.+.+++.+|++.|.|...
T Consensus        79 ~L~m~sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          79 YLELSSLTSEDSAVYYCARS   98 (117)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eecccccCCCcceEEEEeec
Confidence            36678999999999999643

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.51  E-value=0.18  Score=27.18  Aligned_cols=21  Identities=14%  Similarity=0.427  Sum_probs=17.7

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.|.+++.+|++.|.|....
T Consensus        81 ~L~i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          81 VLVMTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EcccccCCcccceEEEEEEec
Confidence            477789999999999997643

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.46  E-value=0.092  Score=27.65  Aligned_cols=19  Identities=16%  Similarity=0.504  Sum_probs=16.2

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.+++++.+|.+.|.|..
T Consensus        80 ~L~~~sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          80 YLQMNSLRPEDTAVYYCAR   98 (117)
T ss_dssp             EEEECSCCGGGCEEEECCE
T ss_pred             EeeeccccCCcceEEEEcc
Confidence            4666899999999999964

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=88.38  E-value=0.15  Score=27.27  Aligned_cols=20  Identities=20%  Similarity=0.497  Sum_probs=16.9

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.|.+++.+|.+.|.|...
T Consensus        80 yL~l~~l~~eDtAvYyCAr~   99 (127)
T d3cx5j1          80 FLKLNSVTTEDTATYYCARS   99 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeccccccceEEEeeee
Confidence            46778999999999999753

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=88.17  E-value=0.16  Score=26.83  Aligned_cols=21  Identities=19%  Similarity=0.398  Sum_probs=17.3

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.+.+++.+|.+.|.|....
T Consensus        80 ~L~~~sL~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          80 FLQLNSVTTEDTATYYCAGLL  100 (119)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             eccccccccCCceEEEEeEec
Confidence            467789999999999997543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.15  E-value=0.22  Score=26.63  Aligned_cols=22  Identities=18%  Similarity=0.436  Sum_probs=17.7

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.|.+++.+|.+.|.|.....
T Consensus        80 yL~~~sL~~eDTA~YYCAr~~~  101 (128)
T d2nxyd1          80 YLELRNLRSDDTAVYFCAGVYE  101 (128)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEC
T ss_pred             EeeeeeccccCceEEEEeEEec
Confidence            3566899999999999986543

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=88.11  E-value=0.16  Score=26.83  Aligned_cols=20  Identities=15%  Similarity=0.421  Sum_probs=16.8

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.|++++.+|.+.|.|...
T Consensus        80 ~L~m~~L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          80 YMELSSLRSEDTAFYFCARE   99 (120)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eccccccCCCcceEEEEEEc
Confidence            46678999999999999754

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=88.09  E-value=0.21  Score=26.65  Aligned_cols=22  Identities=18%  Similarity=0.440  Sum_probs=18.0

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.|++++.+|.+.|.|.-...
T Consensus        80 yL~~~sL~~eDTavYYCAR~~~  101 (127)
T d2fx7h1          80 YLELNSLRPEDTAVYYCAREGT  101 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEE
T ss_pred             eeeecccCcccceEEEEeeccc
Confidence            4667899999999999976543

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=88.09  E-value=0.2  Score=26.74  Aligned_cols=20  Identities=20%  Similarity=0.549  Sum_probs=16.9

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.+.+++.+|++.|.|...
T Consensus        81 ~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          81 FLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             EcceecccccccceEEEEEe
Confidence            46778999999999999753

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=87.94  E-value=0.17  Score=26.88  Aligned_cols=22  Identities=9%  Similarity=0.416  Sum_probs=17.8

Q ss_pred             ceEEeecCCCCCeEEEEEeecC
Q psy7616         112 SITLEKVDRHQAGVYQCTATNG  133 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n~  133 (147)
                      .|.|.+++.+|.+.|.|.....
T Consensus        82 ~L~~~sL~~eDTAvYYCar~~~  103 (122)
T d1q9rb1          82 YLQMNTLRAEDSATYYCARDHD  103 (122)
T ss_dssp             EEEECSCCGGGCEEEEEEECCC
T ss_pred             ccceeeeccCcceEEEEEecCC
Confidence            4667899999999999986433

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.92  E-value=0.92  Score=22.96  Aligned_cols=66  Identities=17%  Similarity=0.310  Sum_probs=42.9

Q ss_pred             EcCCCCceEEeeCCeEEEEEeec-------CCCCCceEEEecCCCCCCCceee---eccceEEEeecCCCCeEEEEEee
Q psy7616          13 TSPSNGQLTVRKGGTITLECKAS-------GNPVPSIIWSKKDSSLPSGEKSL---EGFSITLEKVDRHQAGVYQCTAT   81 (147)
Q Consensus        13 ~~~~~~~~~~~~g~~~~l~C~~~-------~~~~~~v~w~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~g~y~C~~~   81 (147)
                      +.|...  .+..|++++..|...       +.....+.|..++..++...+..   ...++.++++.... ....|.+.
T Consensus         8 I~p~~P--vv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P~~qy~~ln~T~~Svtl~~l~~~~-a~L~C~~l   83 (100)
T d1i1ra1           8 ISPESP--VVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIINRTASSVTFTDIASLN-IQLTCNIL   83 (100)
T ss_dssp             EESSSC--EEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEETTEEEEEECSCCCSE-EEEEEEEE
T ss_pred             EecCCC--eEECCCCEEEEEEECchhcCccCCCcceEEEEECCEECCchheEccCCcEEEEEEccccCCc-ceeEEEEe
Confidence            344433  888999999999975       22446899999998887644322   22346677766443 34566443

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.87  E-value=0.28  Score=26.41  Aligned_cols=21  Identities=19%  Similarity=0.504  Sum_probs=17.1

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.|.+++.+|++.|.|....
T Consensus        79 ~L~~~~L~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          79 YLHLRGLRSDDTAVYYCASNS   99 (133)
T ss_dssp             EEEECSCCGGGCEEEEEEEEE
T ss_pred             EEeeccCCCCCCEEEEeeecc
Confidence            466689999999999996643

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=87.77  E-value=0.27  Score=26.13  Aligned_cols=21  Identities=14%  Similarity=0.480  Sum_probs=17.3

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.|++++.+|.+.|.|....
T Consensus        80 ~Lqm~sL~~eDTAvYYCAr~~  100 (125)
T d1op3h1          80 YLQMHKMRVEDTAIYYCARKG  100 (125)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             eeeeeccCCccceeEeEeecc
Confidence            356689999999999997643

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=87.74  E-value=0.15  Score=27.20  Aligned_cols=19  Identities=21%  Similarity=0.534  Sum_probs=16.3

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.|++++.+|.+.|.|.-
T Consensus        79 yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          79 YMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EeeecccCCCcceEEEEee
Confidence            4667899999999999964

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=87.72  E-value=0.2  Score=26.63  Aligned_cols=20  Identities=25%  Similarity=0.474  Sum_probs=16.7

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.|++++.+|.+.|.|...
T Consensus        80 ~L~~~sL~~eDTAvYYCAR~   99 (124)
T d1yedb1          80 YMQLSSLKSEDSAVYFCTRW   99 (124)
T ss_dssp             EEEEESCCGGGCEEEEEEEC
T ss_pred             EecccccCCCcceEEEeccc
Confidence            46678999999999999753

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.66  E-value=0.18  Score=26.96  Aligned_cols=19  Identities=21%  Similarity=0.501  Sum_probs=16.0

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.|.+++.+|++.|.|.-
T Consensus        80 yL~~~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          80 YMELRSLRSADTAVYYCAR   98 (127)
T ss_dssp             EEEECSCCGGGCEEEEEEE
T ss_pred             EEEEEccCCCCceEEEEEe
Confidence            3666899999999999963

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=87.43  E-value=0.3  Score=26.16  Aligned_cols=21  Identities=19%  Similarity=0.426  Sum_probs=17.3

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.+.+++.+|++.|.|....
T Consensus        79 ~L~~~~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          79 YMELTNLRSDDTAVYYCARDF   99 (130)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EEEeeccCCCCcEEEEEEeec
Confidence            356689999999999997654

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=87.38  E-value=0.21  Score=26.64  Aligned_cols=21  Identities=14%  Similarity=0.496  Sum_probs=17.5

Q ss_pred             ceEEeecCCCCCeEEEEEeec
Q psy7616         112 SITLEKVDRHQAGVYQCTATN  132 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~n  132 (147)
                      .|.+++++.+|++.|.|....
T Consensus        79 ~L~i~~l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          79 YLQMNSLKPEDTAMYYCAADT   99 (126)
T ss_dssp             EEEECSCCGGGCEEEEEEECC
T ss_pred             EEEEeccCcccCceeEEEeec
Confidence            367789999999999997643

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=87.01  E-value=0.25  Score=26.50  Aligned_cols=20  Identities=20%  Similarity=0.587  Sum_probs=16.9

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.+++++.+|++.|.|...
T Consensus        82 ~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          82 YLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             ecceeccccCCceEEEEecc
Confidence            36668999999999999764

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=86.81  E-value=0.21  Score=26.27  Aligned_cols=20  Identities=10%  Similarity=0.556  Sum_probs=16.8

Q ss_pred             ceEEeecCCCCCeEEEEEee
Q psy7616         112 SITLEKVDRHQAGVYQCTAT  131 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a~  131 (147)
                      .|.+++++.+|.+.|.|.-.
T Consensus        79 ~L~i~~l~~eDtA~YyCAr~   98 (118)
T d1lo4h1          79 TLQMSRLRSEDTAIYYCARG   98 (118)
T ss_dssp             EEEECSCCGGGCEEEEEEEE
T ss_pred             eeccccccCCcceEEEeccc
Confidence            46678999999999999754

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.50  E-value=0.92  Score=21.48  Aligned_cols=50  Identities=20%  Similarity=0.379  Sum_probs=30.6

Q ss_pred             eeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEEeec
Q psy7616          23 RKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCTATN   82 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~~~~   82 (147)
                      ...+.+.|.|.      .++.|++++....    ......+-+-+....--|.|.|.+..
T Consensus         7 e~e~~V~L~Cn------~si~W~k~~~~~~----~~~~k~lnLG~~~~DPRG~Y~C~~~e   56 (74)
T d1xiwb_           7 ELEDRVFVNCN------TSITWVEGTVGTL----LSDITRLDLGKRILDPRGIYRCNGTD   56 (74)
T ss_dssp             EETTEEEEECS------SCEEEEEECCCEE----EGGGTEEEEEEGGGCCEEEEEEC---
T ss_pred             ecCCeEEEEcc------CeeEEecCCcccc----cCCccEeecCCcccCCCcceEeCCcc
Confidence            34558899994      3699999864321    12234455556656667999997653

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=86.30  E-value=0.19  Score=26.70  Aligned_cols=19  Identities=11%  Similarity=0.436  Sum_probs=16.0

Q ss_pred             ceEEeecCCCCCeEEEEEe
Q psy7616         112 SITLEKVDRHQAGVYQCTA  130 (147)
Q Consensus       112 ~~~l~~~~~~d~G~Y~C~a  130 (147)
                      .|.|.+++.+|.+.|.|..
T Consensus        80 yL~~~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          80 HLQWSSLKPSDTALYYCAR   98 (124)
T ss_dssp             EEEESSCCGGGCEEEEEEE
T ss_pred             EEeeeccccccceEEEEee
Confidence            4666899999999999954

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=85.57  E-value=0.98  Score=20.89  Aligned_cols=47  Identities=21%  Similarity=0.399  Sum_probs=27.8

Q ss_pred             eeCCeEEEEEeecCCCCCceEEEecCCCCCCCceeeeccceEEEeecCCCCeEEEEE
Q psy7616          23 RKGGTITLECKASGNPVPSIIWSKKDSSLPSGEKSLEGFSITLEKVDRHQAGVYQCT   79 (147)
Q Consensus        23 ~~g~~~~l~C~~~~~~~~~v~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~y~C~   79 (147)
                      ...+.+.|.|.      .++.|.+++......    .+..+-+-+....--|.|.|.
T Consensus         6 e~edkV~L~Cn------~sI~w~k~~~~~~~~----~~ktlnLG~~~~DPRGiY~C~   52 (66)
T d1xmwa2           6 EAEDKVILKCN------SSITLLQGTAGQEVS----DNKTLNLGKRIEDPRGMYQCG   52 (66)
T ss_dssp             EETTEEEEECS------SSCEEEEECCCCBSS----SSSBBCCBCSTTCCEEEEECC
T ss_pred             ecCceEEEEcc------CeEEEccCccccccC----CCcEEeCCCcccCCCcceECC
Confidence            34568899994      258999986432111    122333444445556999994

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.21  E-value=0.33  Score=25.09  Aligned_cols=66  Identities=12%  Similarity=0.259  Sum_probs=42.7

Q ss_pred             ceEEeeCCeEEEEEeecCC--CCCceEEEec--CCCC------C-CC---------ce-ee-----eccceEEEeecCCC
Q psy7616          19 QLTVRKGGTITLECKASGN--PVPSIIWSKK--DSSL------P-SG---------EK-SL-----EGFSITLEKVDRHQ   72 (147)
Q Consensus        19 ~~~~~~g~~~~l~C~~~~~--~~~~v~w~~~--~~~~------~-~~---------~~-~~-----~~~~l~~~~~~~~~   72 (147)
                      .+.+.+|+.+++.|...+.  ....+.|++.  +...      . ..         +. ..     ....|.|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            4578899999999997543  3445789983  2211      0 00         00 11     11247888999999


Q ss_pred             CeEEEEEeecCC
Q psy7616          73 AGVYQCTATNGV   84 (147)
Q Consensus        73 ~g~y~C~~~~~~   84 (147)
                      +|.|.|......
T Consensus        84 sa~YyCa~~~~~   95 (110)
T d1u9ka_          84 SGLYRCVIYHPP   95 (110)
T ss_dssp             CEEEEEEEECTT
T ss_pred             CEEEEEEEeCCC
Confidence            999999876543