Psyllid ID: psy7634

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200------
Protein Sequence
MALSLVNSFKNLLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQHSRFRLVDEPRVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEEEcccccccccccccccccccccccccEEEEccEEEEcccEEEEEEcccccccccccEEEccccEEEEEEccEEEEEEEEccccccEEEEEEcccccccccccccEEEEccccccccccccccHHHHHHHHcccccccccccccccccccccccEEEccEEEEEccEEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccccccccccccEEEcccEEEcccEEEEEEcccEEEEccccccccccccEEEEEcccEEEEEEEcccccccccEEEEEEcccccccEEEEEEEEEcccccccEEEcccccHHHHccccccccccccccccccccccccccEcccHHHHHHcEEEEEEEHEcccccccc
Coil and Loop (DISEMBL)
MALSLVNSFKNLLTTSQPVCMSVRNAakktgtstrnkpirknsgfrfpkgfrkqegevvEKGSILYISYVQrldyhpglnvgfgargtlfamEKGKVKITVEKCNLNWKHTWVIANysgqeglpiykkhihvlpeeqhsrfrlvdeprvrnaakktgtstrnkpirknsgfrfpkgfrkqegevvEKGSILYISYVQrldyhpgln
Flexible Loop (DISEMBL)
MALSLVNSFKnllttsqpvcmsvrnaakktgtstrnkpirknsgfrfpkgfrkqegevvekGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQhsrfrlvdeprvrnaakktgtstrnkpirknsgfrfpkgfrkqegevvekgsilyisyvqrldyhpgln
Low Complexity Region (SEG)
MALSLVNSFKNLLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQHSRFRLVDEPRVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN
Disordered region (IsUnstruct)
*******************************************************GEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLP************************************************EVVEKGSILYISYVQRLDY*****
Disordered Region (DISOPRED)
************LTTSQPVCMSVRN************************GFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQHSRFR***********************************************ILYISYVQRLDYHP***
Disordered Region (DISEMBL)
MALSLVNSFKNLLTTSQPVCMSVRNA**********KPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQHSRFRLVDEPRVRN***********KPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN
Disordered Region (DISPRO)
MALSLVNSFKNLLTTSQPVCMSVRNAAKK******************PKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQHSRFRLVDEP***************KPI*KNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALSLVNSFKNLLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQHSRFRLVDEPRVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	206	2.2.26 [Sep-21-2011]
Q99N92	148	39S ribosomal protein L27	yes	N/A	0.626	0.871	0.348	5e-12
Q32PC3	148	39S ribosomal protein L27	yes	N/A	0.674	0.939	0.34	5e-11
Q9P0M9	148	39S ribosomal protein L27	yes	N/A	0.674	0.939	0.324	3e-10
Q12F98	85	50S ribosomal protein L27	yes	N/A	0.368	0.894	0.443	0.0002
C4K900	85	50S ribosomal protein L27	yes	N/A	0.344	0.835	0.441	0.0005
Q049M5	99	50S ribosomal protein L27	yes	N/A	0.412	0.858	0.348	0.0005
Q21M08	85	50S ribosomal protein L27	yes	N/A	0.402	0.976	0.411	0.0006
Q2L060	86	50S ribosomal protein L27	yes	N/A	0.402	0.965	0.411	0.0006
A1VK91	85	50S ribosomal protein L27	yes	N/A	0.393	0.952	0.380	0.0009

>sp|Q99N92|RM27_MOUSE 39S ribosomal protein L27, mitochondrial OS=Mus musculus GN=Mrpl27 PE=2 SV=1

 Score = 70.9 bits (172), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 47/135 (34%), Positives = 77/135 (57%), Gaps = 6/135 (4%)

Query: 12  LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQ 71
           LL+ + P  ++VR+A+KKTG S++N    K+ G  +  G +K EG  V  G+IL     +
Sbjct: 17  LLSPTAPTALAVRHASKKTGGSSKNLG-GKSRGKHY--GIKKMEGHYVHAGNILGTQ--R 71

Query: 72  RLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG-QEGLPIYKKHI 130
           +  +HPG +VG G    L+A+E+G V+ T +    N K+T  +   +   +G  +YK  +
Sbjct: 72  QFRWHPGAHVGLGRNKCLYALEEGIVRYTKDVYVPNPKNTEAVDLVTSLPKGAVLYKTFV 131

Query: 131 HVLPEEQHSRFRLVD 145
           HV+P +    F+LVD
Sbjct: 132 HVVPAKPEGTFKLVD 146

Mus musculus (taxid: 10090)

>sp|Q32PC3|RM27_BOVIN 39S ribosomal protein L27, mitochondrial OS=Bos taurus GN=MRPL27 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 11/150 (7%)

Query: 1   MALSLV-----NSFKNLLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQE 55
           MAL+++      +   LL+  Q   ++VR A+KKTG S++N    K+ G RF  G RK E
Sbjct: 1   MALAVLAWRTRTAVIALLSPPQAAALAVRYASKKTGGSSKNLG-GKSPGKRF--GIRKME 57

Query: 56  GEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
           G  V  G+IL     +   +HPG +VG G    L+A+E+G V+ T E    +  ++  + 
Sbjct: 58  GHYVHAGNILATQ--RHFRWHPGAHVGLGKNKCLYALEEGVVRYTKEVYVPSPSNSEAVD 115

Query: 116 NYSG-QEGLPIYKKHIHVLPEEQHSRFRLV 144
             +   EG  +YK  +HV+P +    F+LV
Sbjct: 116 LVTRLPEGAVLYKTFVHVVPAKPEGTFKLV 145

Bos taurus (taxid: 9913)

>sp|Q9P0M9|RM27_HUMAN 39S ribosomal protein L27, mitochondrial OS=Homo sapiens GN=MRPL27 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 81/145 (55%), Gaps = 6/145 (4%)

Query: 1   MALSLVNSFKNLLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVE 60
           +AL    +  +LL+ +    ++VR A+KK+G S++N    K+SG R  +G +K EG  V 
Sbjct: 6   LALRTRTAVTSLLSPTPATALAVRYASKKSGGSSKNLG-GKSSGRR--QGIKKMEGHYVH 62

Query: 61  KGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG- 119
            G+I  I+  +   +HPG +VG G    L+A+E+G V+ T E    + ++T  +   +  
Sbjct: 63  AGNI--IATQRHFRWHPGAHVGVGKNKCLYALEEGIVRYTKEVYVPHPRNTEAVDLITRL 120

Query: 120 QEGLPIYKKHIHVLPEEQHSRFRLV 144
            +G  +YK  +HV+P +    F+LV
Sbjct: 121 PKGAVLYKTFVHVVPAKPEGTFKLV 145

Homo sapiens (taxid: 9606)

>sp|Q12F98|RL27_POLSJ 50S ribosomal protein L27 OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=rpmA PE=3 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 47/88 (53%), Gaps = 12/88 (13%)

Query: 26  AAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGF 83
           A KK G STRN    +      PK  G +K  GEV+  GSI  I   +   +HPG+NVG 
Sbjct: 2   AQKKGGGSTRNGRDSQ------PKMLGVKKFGGEVINAGSI--IVRQRGTKFHPGVNVGI 53

Query: 84  GARGTLFAMEKGKVKITVEKCNLNWKHT 111
           G   TLFA+  G V  +V K  LN KHT
Sbjct: 54  GKDHTLFALVDGAVSFSV-KGALN-KHT 79

Polaromonas sp. (strain JS666 / ATCC BAA-500) (taxid: 296591)

>sp|C4K900|RL27_HAMD5 50S ribosomal protein L27 OS=Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) GN=rpmA PE=3 SV=1

 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 6/77 (7%)

Query: 26  AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
           A KK G STRN   R + G R   G ++  GE V  G+I  I   +   +HPG+NVG G 
Sbjct: 2   AHKKAGGSTRNG--RDSEGKRL--GVKRFGGEKVLAGTI--IVRQRGTKFHPGVNVGCGK 55

Query: 86  RGTLFAMEKGKVKITVE 102
             TLFA+  GKVK  V+
Sbjct: 56  DHTLFALSHGKVKFEVK 72

Hamiltonella defensa subsp. Acyrthosiphon pisum (strain 5AT) (taxid: 572265)

>sp|Q049M5|RL27_LACDB 50S ribosomal protein L27 OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) GN=rpmA PE=3 SV=1

 Score = 44.3 bits (103), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 50/112 (44%), Gaps = 27/112 (24%)

Query: 26  AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
           A  K G ST N   R ++G R   G ++ +G+ V  GSI+Y     ++  HPG NVG G 
Sbjct: 13  AHHKGGGSTTNG--RNSAGRRL--GAKRADGQEVHAGSIIYRQRGTKI--HPGKNVGRGG 66

Query: 86  RGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQ 137
             TLFA+  G VK                      E L  YKK + VLP E 
Sbjct: 67  DDTLFALTNGVVKF---------------------ERLGKYKKQVSVLPVED 97

Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC BAA-365) (taxid: 321956)

>sp|Q21M08|RL27_SACD2 50S ribosomal protein L27 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rpmA PE=3 SV=1

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 7/90 (7%)

Query: 26  AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
           A KK G STRN   R +   R   G ++  GE V  GSI+      R+  HPG NVG G 
Sbjct: 2   AHKKAGGSTRNG--RDSESKRL--GVKRFGGETVTAGSIIVRQRGTRV--HPGENVGLGK 55

Query: 86  RGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
             TLFA  +G VK  V+  N N K+  ++A
Sbjct: 56  DHTLFAKVEGAVKFEVKGPN-NRKYVSIVA 84

Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) (taxid: 203122)

>sp|Q2L060|RL27_BORA1 50S ribosomal protein L27 OS=Bordetella avium (strain 197N) GN=rpmA PE=3 SV=1

 Score = 44.3 bits (103), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 37/90 (41%), Positives = 45/90 (50%), Gaps = 7/90 (7%)

Query: 26  AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
           A KK G STRN   R +   R   G +   G+ +  GSI+      R  +HPG+NVG G 
Sbjct: 2   AQKKGGGSTRNG--RDSESKRL--GVKVYGGQEILAGSIIVRQRGTR--FHPGVNVGVGK 55

Query: 86  RGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
             TLFA+  GKVK    K  LN    WV A
Sbjct: 56  DHTLFALADGKVKFGT-KGALNKATVWVEA 84

Bordetella avium (strain 197N) (taxid: 360910)

>sp|A1VK91|RL27_POLNA 50S ribosomal protein L27 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rpmA PE=3 SV=1

 Score = 43.9 bits (102), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 35/92 (38%), Positives = 48/92 (52%), Gaps = 11/92 (11%)

Query: 26  AAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGF 83
           A KK G STRN    +      PK  G +K  GEV+  GSI  I   +   +HPG+NVG 
Sbjct: 2   AQKKGGGSTRNGRDSQ------PKMLGVKKFGGEVINAGSI--IVRQRGTQFHPGVNVGI 53

Query: 84  GARGTLFAMEKGKVKITVEKCNLNWKHTWVIA 115
           G   TL+A+  G+V   + K ++N +   V A
Sbjct: 54  GKDHTLYALVDGQVSFAI-KGSMNKRTVNVTA 84

Polaromonas naphthalenivorans (strain CJ2) (taxid: 365044)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
195342476	143	GM18087 [Drosophila sechellia] gi|194132	0.616	0.888	0.544	2e-31
195576542	143	GD22705 [Drosophila simulans] gi|1941901	0.621	0.895	0.540	2e-31
28574706	138	mitochondrial ribosomal protein L27, iso	0.621	0.927	0.532	2e-30
201065869	157	FI06434p [Drosophila melanogaster]	0.621	0.815	0.532	2e-30
195159495	138	GL15397 [Drosophila persimilis] gi|19411	0.616	0.920	0.529	4e-30
195471281	143	GE14710 [Drosophila yakuba] gi|194174034	0.616	0.888	0.529	5e-30
194856125	138	GG24371 [Drosophila erecta] gi|190660548	0.621	0.927	0.525	5e-30
198475225	138	GA17231 [Drosophila pseudoobscura pseudo	0.616	0.920	0.522	8e-30
194766213	143	GF24000 [Drosophila ananassae] gi|190617	0.616	0.888	0.514	8e-29
156543326	148	PREDICTED: 39S ribosomal protein L27, mi	0.616	0.858	0.467	2e-28

>gi|195342476|ref|XP_002037826.1| GM18087 [Drosophila sechellia] gi|194132676|gb|EDW54244.1| GM18087 [Drosophila sechellia]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/136 (54%), Positives = 91/136 (66%), Gaps = 9/136 (6%)

Query: 13  LTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISYV 70
           L   QP+  +VRNA+KKTG STRNK      G   PK  G+R Q+G  V +G+IL     
Sbjct: 14  LKADQPLMSTVRNASKKTGGSTRNK-----KGHARPKHRGWRVQDGHHVSEGTILATQLT 68

Query: 71  QRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHI 130
            R  +HPGLNVGFG  GTLFAME GKV +T E  + NW HTW+  NY+G++G PIYKK  
Sbjct: 69  TR--FHPGLNVGFGRNGTLFAMEHGKVYVTCEAIDPNWDHTWIQRNYAGRQGQPIYKKFF 126

Query: 131 HVLPEEQHSRFRLVDE 146
           +V+PE QH RFRLV+E
Sbjct: 127 NVVPENQHQRFRLVEE 142

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195576542|ref|XP_002078134.1| GD22705 [Drosophila simulans] gi|194190143|gb|EDX03719.1| GD22705 [Drosophila simulans]

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/137 (54%), Positives = 91/137 (66%), Gaps = 9/137 (6%)

Query: 12  LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISY 69
            L   QP+  +VRNA+KKTG STRNK      G   PK  G+R Q+G  V +G+IL    
Sbjct: 13  CLKADQPLMSTVRNASKKTGGSTRNK-----KGHARPKHRGWRVQDGHHVSEGTILATQL 67

Query: 70  VQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKH 129
             R  +HPGLNVGFG  GTLFAME GKV +T E  + NW HTW+  NY+G++G PIYKK 
Sbjct: 68  TTR--FHPGLNVGFGRNGTLFAMEHGKVYVTCEAIDPNWDHTWIQRNYAGRQGQPIYKKF 125

Query: 130 IHVLPEEQHSRFRLVDE 146
            +V+PE QH RFRLV+E
Sbjct: 126 FNVVPENQHQRFRLVEE 142

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|28574706|ref|NP_787971.1| mitochondrial ribosomal protein L27, isoform A [Drosophila melanogaster] gi|442625891|ref|NP_001260028.1| mitochondrial ribosomal protein L27, isoform B [Drosophila melanogaster] gi|28380263|gb|AAO41158.1| mitochondrial ribosomal protein L27, isoform A [Drosophila melanogaster] gi|440213313|gb|AGB92564.1| mitochondrial ribosomal protein L27, isoform B [Drosophila melanogaster]

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 90/137 (65%), Gaps = 9/137 (6%)

Query: 12  LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISY 69
            L   QP+  +VRNA+KKTG STRNK      G   PK  G+R Q+G  V +G+IL    
Sbjct: 8   CLKADQPLMTTVRNASKKTGGSTRNK-----KGHARPKHRGWRVQDGHHVSEGTILATQL 62

Query: 70  VQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKH 129
             R  +HPGLNVGFG  GTLFAME GKV +T E  + NW HTW+  NY+G++G  IYKK 
Sbjct: 63  TTR--FHPGLNVGFGRNGTLFAMEHGKVYVTCEAIDPNWDHTWIQRNYAGRQGQNIYKKF 120

Query: 130 IHVLPEEQHSRFRLVDE 146
            +V+PE QH RFRLV+E
Sbjct: 121 FNVVPENQHQRFRLVEE 137

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|201065869|gb|ACH92344.1| FI06434p [Drosophila melanogaster]

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/137 (53%), Positives = 90/137 (65%), Gaps = 9/137 (6%)

Query: 12  LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISY 69
            L   QP+  +VRNA+KKTG STRNK      G   PK  G+R Q+G  V +G+IL    
Sbjct: 27  CLKADQPLMTTVRNASKKTGGSTRNK-----KGHARPKHRGWRVQDGHHVSEGTILATQL 81

Query: 70  VQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKH 129
             R  +HPGLNVGFG  GTLFAME GKV +T E  + NW HTW+  NY+G++G  IYKK 
Sbjct: 82  TTR--FHPGLNVGFGRNGTLFAMEHGKVYVTCEAIDPNWDHTWIQRNYAGRQGQNIYKKF 139

Query: 130 IHVLPEEQHSRFRLVDE 146
            +V+PE QH RFRLV+E
Sbjct: 140 FNVVPENQHQRFRLVEE 156

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195159495|ref|XP_002020614.1| GL15397 [Drosophila persimilis] gi|194117564|gb|EDW39607.1| GL15397 [Drosophila persimilis]

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 89/136 (65%), Gaps = 9/136 (6%)

Query: 13  LTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISYV 70
           L   QP+  ++RNA+KKTG STRNK      G   PK  G+R  +G +V +G+IL     
Sbjct: 9   LKADQPLITTIRNASKKTGGSTRNK-----KGHPRPKHRGWRVMDGHIVSEGTILATQLT 63

Query: 71  QRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHI 130
            R  +HPGLNVGFG  GTLFAME GKV +T E    NW HTWV  NY+G++   IYKK  
Sbjct: 64  TR--FHPGLNVGFGRNGTLFAMEHGKVYVTCETIEPNWDHTWVQRNYAGRQNQTIYKKFF 121

Query: 131 HVLPEEQHSRFRLVDE 146
           +V+PE+QH RFRLVDE
Sbjct: 122 NVIPEKQHQRFRLVDE 137

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195471281|ref|XP_002087933.1| GE14710 [Drosophila yakuba] gi|194174034|gb|EDW87645.1| GE14710 [Drosophila yakuba]

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/136 (52%), Positives = 89/136 (65%), Gaps = 9/136 (6%)

Query: 13  LTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISYV 70
           L   QP+  +VRNA+KKTG STRNK      G   PK  G+R Q+G  V +G+IL     
Sbjct: 14  LKADQPLMTTVRNASKKTGGSTRNK-----KGHARPKHRGWRVQDGHYVSEGTILATQLT 68

Query: 71  QRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHI 130
            R  +HPGLNVGFG  GTLFAME GKV +T E  + NW HTW+  NY+G++   IYKK  
Sbjct: 69  TR--FHPGLNVGFGRNGTLFAMEHGKVYVTCEAIDPNWDHTWIQRNYAGRQDQTIYKKFF 126

Query: 131 HVLPEEQHSRFRLVDE 146
           +V+PE QH RFRLV+E
Sbjct: 127 NVVPENQHQRFRLVEE 142

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194856125|ref|XP_001968681.1| GG24371 [Drosophila erecta] gi|190660548|gb|EDV57740.1| GG24371 [Drosophila erecta]

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 72/137 (52%), Positives = 89/137 (64%), Gaps = 9/137 (6%)

Query: 12  LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISY 69
            L   QP+  +VRNA+KKTG STRNK      G   PK  G+R Q+G  V +G+IL    
Sbjct: 8   CLKADQPLMTTVRNASKKTGGSTRNK-----KGHARPKHRGWRVQDGHYVSEGTILATQL 62

Query: 70  VQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKH 129
             R  +HPGLNVGFG  GTLFAME GKV +T E  + NW HTW+  NY+G++   IYKK 
Sbjct: 63  TTR--FHPGLNVGFGRNGTLFAMEHGKVYVTCEAIDPNWDHTWIQRNYAGRQDQTIYKKF 120

Query: 130 IHVLPEEQHSRFRLVDE 146
            +V+PE QH RFRLV+E
Sbjct: 121 FNVVPENQHQRFRLVEE 137

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198475225|ref|XP_001356973.2| GA17231 [Drosophila pseudoobscura pseudoobscura] gi|198138727|gb|EAL34039.2| GA17231 [Drosophila pseudoobscura pseudoobscura]

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/136 (52%), Positives = 89/136 (65%), Gaps = 9/136 (6%)

Query: 13  LTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISYV 70
           L   QP+  ++RNA+KKTG STRNK      G   PK  G+R  +G +V +G+IL     
Sbjct: 9   LKADQPLITTIRNASKKTGGSTRNK-----KGHPRPKHRGWRVMDGHIVSEGTILATQLT 63

Query: 71  QRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHI 130
            R  +HPGLNVGFG  GTLFAME GKV +T E    NW H+WV  NY+G++   IYKK  
Sbjct: 64  TR--FHPGLNVGFGRNGTLFAMEHGKVYVTCETIEPNWDHSWVQRNYAGRQNQTIYKKFF 121

Query: 131 HVLPEEQHSRFRLVDE 146
           +V+PE+QH RFRLVDE
Sbjct: 122 NVIPEKQHQRFRLVDE 137

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194766213|ref|XP_001965219.1| GF24000 [Drosophila ananassae] gi|190617829|gb|EDV33353.1| GF24000 [Drosophila ananassae]

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 70/136 (51%), Positives = 88/136 (64%), Gaps = 9/136 (6%)

Query: 13  LTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISYV 70
           L   QP+  ++RNA+KKTG STRNK      G   PK  G+R Q+G  V +G++L     
Sbjct: 14  LKADQPLITTIRNASKKTGGSTRNK-----KGHARPKHRGWRVQDGHYVSEGTLLATQLT 68

Query: 71  QRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHI 130
            R  +HPGLNVGFG  GTLFAME GKV +T E    NW H+WV  NY+G+    IYKK  
Sbjct: 69  TR--FHPGLNVGFGRNGTLFAMEHGKVYVTCEPIEPNWDHSWVQKNYAGRHDQTIYKKFF 126

Query: 131 HVLPEEQHSRFRLVDE 146
           +V+PE+QH RFRLV+E
Sbjct: 127 NVVPEKQHQRFRLVEE 142

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543326|ref|XP_001606518.1| PREDICTED: 39S ribosomal protein L27, mitochondrial-like [Nasonia vitripennis]

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/137 (46%), Positives = 93/137 (67%), Gaps = 10/137 (7%)

Query: 12  LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISY 69
           LL  ++ + +S R A+KK+G++T      +N G   PK  G+++Q+G  V  G+IL    
Sbjct: 19  LLKPAESLAVSCRFASKKSGSTT------QNVGNSKPKHRGWKRQDGATVTAGTILATQN 72

Query: 70  VQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKH 129
             R  +HPGLNVGFG  GTLFAM  GKV +T EK +LNW+HTW+  NY+ ++G PIYKKH
Sbjct: 73  TTR--FHPGLNVGFGRNGTLFAMHSGKVVVTCEKVDLNWEHTWIQRNYADRQGQPIYKKH 130

Query: 130 IHVLPEEQHSRFRLVDE 146
            +++PE +H RF+L+D+
Sbjct: 131 FNIIPEPEHKRFKLIDK 147

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	206
FB|FBgn0053002	138	mRpL27 "mitochondrial ribosoma	0.616	0.920	0.536	7.7e-32
MGI|MGI:2137224	148	Mrpl27 "mitochondrial ribosoma	0.626	0.871	0.348	5.4e-15
RGD|1309090	150	Mrpl27 "mitochondrial ribosoma	0.626	0.86	0.348	6.9e-15
ZFIN|ZDB-GENE-050522-129	148	mrpl27 "mitochondrial ribosoma	0.684	0.952	0.342	4.9e-14
UNIPROTKB|Q32PC3	148	MRPL27 "39S ribosomal protein	0.621	0.864	0.358	6.2e-14
UNIPROTKB|F1RT79	148	LOC100737651 "Uncharacterized	0.621	0.864	0.350	7.9e-14
UNIPROTKB|E2QYN6	149	MRPL27 "Uncharacterized protei	0.621	0.859	0.358	1.3e-13
UNIPROTKB|Q9P0M9	148	MRPL27 "39S ribosomal protein	0.674	0.939	0.324	2.7e-13
UNIPROTKB|H7C5U8	136	MRPL27 "39S ribosomal protein	0.577	0.875	0.338	1.2e-10
UNIPROTKB|F1NU81	146	MRPL27 "Uncharacterized protei	0.606	0.856	0.357	5.2e-10

FB|FBgn0053002 mRpL27 "mitochondrial ribosomal protein L27" [Drosophila melanogaster (taxid:7227)]

 Score = 349 (127.9 bits), Expect = 7.7e-32, P = 7.7e-32
 Identities = 73/136 (53%), Positives = 90/136 (66%)

Query:    13 LTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPK--GFRKQEGEVVEKGSILYISYV 70
             L   QP+  +VRNA+KKTG STRNK      G   PK  G+R Q+G  V +G+IL     
Sbjct:     9 LKADQPLMTTVRNASKKTGGSTRNK-----KGHARPKHRGWRVQDGHHVSEGTILATQLT 63

Query:    71 QRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHI 130
              R  +HPGLNVGFG  GTLFAME GKV +T E  + NW HTW+  NY+G++G  IYKK  
Sbjct:    64 TR--FHPGLNVGFGRNGTLFAMEHGKVYVTCEAIDPNWDHTWIQRNYAGRQGQNIYKKFF 121

Query:   131 HVLPEEQHSRFRLVDE 146
             +V+PE QH RFRLV+E
Sbjct:   122 NVVPENQHQRFRLVEE 137

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=IEA

MGI|MGI:2137224 Mrpl27 "mitochondrial ribosomal protein L27" [Mus musculus (taxid:10090)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 47/135 (34%), Positives = 77/135 (57%)

Query:    12 LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQ 71
             LL+ + P  ++VR+A+KKTG S++N    K+ G  +  G +K EG  V  G+IL     +
Sbjct:    17 LLSPTAPTALAVRHASKKTGGSSKNLG-GKSRGKHY--GIKKMEGHYVHAGNILGTQ--R 71

Query:    72 RLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG-QEGLPIYKKHI 130
             +  +HPG +VG G    L+A+E+G V+ T +    N K+T  +   +   +G  +YK  +
Sbjct:    72 QFRWHPGAHVGLGRNKCLYALEEGIVRYTKDVYVPNPKNTEAVDLVTSLPKGAVLYKTFV 131

Query:   131 HVLPEEQHSRFRLVD 145
             HV+P +    F+LVD
Sbjct:   132 HVVPAKPEGTFKLVD 146

GO:0003735 "structural constituent of ribosome" evidence=ISO

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISO

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|1309090 Mrpl27 "mitochondrial ribosomal protein L27" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 47/135 (34%), Positives = 77/135 (57%)

Query:    12 LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQ 71
             LL+ + P  ++VR+A+KKTG S++N    K+ G  +  G +K EG  V  G+IL     +
Sbjct:    19 LLSPTAPTALAVRSASKKTGGSSKNLG-GKSRGKHY--GIKKMEGHYVHAGNILGTQ--R 73

Query:    72 RLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG-QEGLPIYKKHI 130
             +  +HPG +VG G    L+A+E+G V+ T E    N K++  +   +   +G  +YK  +
Sbjct:    74 QFRWHPGAHVGLGKNKCLYALEEGIVRYTKEVYVPNPKNSEAVNLVTSLPKGAVLYKTFV 133

Query:   131 HVLPEEQHSRFRLVD 145
             HV+P +    F+LVD
Sbjct:   134 HVVPAKPEGTFKLVD 148

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

ZFIN|ZDB-GENE-050522-129 mrpl27 "mitochondrial ribosomal protein L27" [Danio rerio (taxid:7955)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 50/146 (34%), Positives = 80/146 (54%)

Query:     1 MALSLVNSFKNLLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVE 60
             M+L L+ S   +L +  P  +  R A+KK+G S++N    K+SG R+  G++KQ+G  V 
Sbjct:     5 MSL-LLRSKSCILFSETPTVVLARFASKKSGGSSKNLG-GKSSGRRY--GYKKQDGNFVH 60

Query:    61 KGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG- 119
              G+IL       + +HPG +VG G   TL+A+E G V+ T E      +      N    
Sbjct:    61 AGNILATQRKGLMRWHPGAHVGIGTNKTLYALEDGIVRYTKEVYVPLPRSAEARENIPQL 120

Query:   120 QEGLPIYKKHIHVLPEEQHSRFRLVD 145
              +G  +YK  ++V+P +Q ++F LVD
Sbjct:   121 PKGAVLYKTFVNVVPTKQENKFTLVD 146

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q32PC3 MRPL27 "39S ribosomal protein L27, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 48/134 (35%), Positives = 73/134 (54%)

Query:    12 LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQ 71
             LL+  Q   ++VR A+KKTG S++N    K+ G RF  G RK EG  V  G+IL     +
Sbjct:    17 LLSPPQAAALAVRYASKKTGGSSKNLG-GKSPGKRF--GIRKMEGHYVHAGNILATQ--R 71

Query:    72 RLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG-QEGLPIYKKHI 130
                +HPG +VG G    L+A+E+G V+ T E    +  ++  +   +   EG  +YK  +
Sbjct:    72 HFRWHPGAHVGLGKNKCLYALEEGVVRYTKEVYVPSPSNSEAVDLVTRLPEGAVLYKTFV 131

Query:   131 HVLPEEQHSRFRLV 144
             HV+P +    F+LV
Sbjct:   132 HVVPAKPEGTFKLV 145

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1RT79 LOC100737651 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 47/134 (35%), Positives = 73/134 (54%)

Query:    12 LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQ 71
             LL+  Q   ++VR A+KKTG S++N    K+ G RF  G +K EG  V  G+IL     +
Sbjct:    17 LLSPPQAAALAVRYASKKTGGSSKNLG-GKSPGKRF--GIKKMEGHYVHAGNILATQ--R 71

Query:    72 RLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG-QEGLPIYKKHI 130
                +HPG +VG G    L+A+E+G V+ T E    N  ++  +   +   +G  +YK  +
Sbjct:    72 HFRWHPGAHVGLGKNKCLYALEEGVVRYTKEVYVPNPSNSEAVDLVTRLPQGAVLYKTFV 131

Query:   131 HVLPEEQHSRFRLV 144
             HV+P +    F+LV
Sbjct:   132 HVVPAKPEGTFKLV 145

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2QYN6 MRPL27 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 48/134 (35%), Positives = 73/134 (54%)

Query:    12 LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQ 71
             LL+  Q   ++VR A+KKTG S++N    K+ G RF  G RK EG  V  G+IL     +
Sbjct:    18 LLSPPQAASLAVRYASKKTGGSSKNLG-GKSPGKRF--GLRKMEGHYVHAGNILATQ--R 72

Query:    72 RLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG-QEGLPIYKKHI 130
                +HPG +VG G +  L+A+E+G V  T E    +  +T  +   +   +G  +YK  +
Sbjct:    73 HFRWHPGAHVGLGKKKHLYALEEGVVHYTKEVYVPSPSNTEAVELVTRLPKGAVLYKTFV 132

Query:   131 HVLPEEQHSRFRLV 144
             HV+P +    F+LV
Sbjct:   133 HVVPVKPEGTFKLV 146

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q9P0M9 MRPL27 "39S ribosomal protein L27, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 47/145 (32%), Positives = 81/145 (55%)

Query:     1 MALSLVNSFKNLLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVE 60
             +AL    +  +LL+ +    ++VR A+KK+G S++N    K+SG R  +G +K EG  V 
Sbjct:     6 LALRTRTAVTSLLSPTPATALAVRYASKKSGGSSKNLG-GKSSGRR--QGIKKMEGHYVH 62

Query:    61 KGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG- 119
              G+I  I+  +   +HPG +VG G    L+A+E+G V+ T E    + ++T  +   +  
Sbjct:    63 AGNI--IATQRHFRWHPGAHVGVGKNKCLYALEEGIVRYTKEVYVPHPRNTEAVDLITRL 120

Query:   120 QEGLPIYKKHIHVLPEEQHSRFRLV 144
              +G  +YK  +HV+P +    F+LV
Sbjct:   121 PKGAVLYKTFVHVVPAKPEGTFKLV 145

GO:0005762 "mitochondrial large ribosomal subunit" evidence=NAS

GO:0006412 "translation" evidence=NAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

UNIPROTKB|H7C5U8 MRPL27 "39S ribosomal protein L27, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 44/130 (33%), Positives = 72/130 (55%)

Query:    21 MSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPG-- 78
             ++VR A+KK+G S++N    K+SG R  +G +K EG  V  G+I  I+  +   +HPG  
Sbjct:     9 LAVRYASKKSGGSSKNLG-GKSSGRR--QGIKKMEGHYVHAGNI--IATQRHFRWHPGAH 63

Query:    79 ---LNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSG-QEGLPIYKKHIHVLP 134
                L VG G    L+A+E+G V+ T E    + ++T  +   +   +G  +YK  +HV+P
Sbjct:    64 VCVLQVGVGKNKCLYALEEGIVRYTKEVYVPHPRNTEAVDLITRLPKGAVLYKTFVHVVP 123

Query:   135 EEQHSRFRLV 144
              +    F+LV
Sbjct:   124 AKPEGTFKLV 133

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|F1NU81 MRPL27 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 49/137 (35%), Positives = 73/137 (53%)

Query:    12 LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQ 71
             +L+  Q    +VR A+KK+G S++N   R + G R+  G +K EG  V  G+IL     Q
Sbjct:    15 VLSVPQTSLAAVRCASKKSGGSSKNLGGR-SPGKRY--GAKKVEGAYVHAGNILA---TQ 68

Query:    72 RL-DYHPGLNVGFGARGTLFAMEKGKVKITVEKC---NLNWKHTWVIANYSGQEGLPIYK 127
             RL  +HPG +VG G   TL+A+E G V+ T E       + +   VI +    +G  +YK
Sbjct:    69 RLIRWHPGAHVGMGRNKTLYALEDGIVRYTKEVYVPPPRSSESREVICSLP--KGAILYK 126

Query:   128 KHIHVLPEEQHSRFRLV 144
               I V+P  +   F+LV
Sbjct:   127 TFISVIPTTEVGSFKLV 143

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q32PC3	RM27_BOVIN	No assigned EC number	0.34	0.6747	0.9391	yes	N/A
Q99N92	RM27_MOUSE	No assigned EC number	0.3481	0.6262	0.8716	yes	N/A
Q9P0M9	RM27_HUMAN	No assigned EC number	0.3241	0.6747	0.9391	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	206
pfam01016	80	pfam01016, Ribosomal_L27, Ribosomal L27 protein	2e-10
COG0211	87	COG0211, RpmA, Ribosomal protein L27 [Translation,	7e-08
TIGR00062	83	TIGR00062, L27, ribosomal protein L27	2e-07
PRK05435	82	PRK05435, rpmA, 50S ribosomal protein L27; Validat	4e-06
CHL00121	86	CHL00121, rpl27, ribosomal protein L27; Reviewed	3e-04

>gnl|CDD|201553 pfam01016, Ribosomal_L27, Ribosomal L27 protein

 Score = 54.8 bits (133), Expect = 2e-10
 Identities = 32/79 (40%), Positives = 43/79 (54%), Gaps = 8/79 (10%)

Query: 26  AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
           A KK G ST+N   R ++G R   G +K  G+ V+ G+I+     QR   +HPG NVG G
Sbjct: 1   AHKKGGGSTKNG--RDSNGKRL--GVKKFGGQFVKAGNIIV---RQRGTKFHPGENVGMG 53

Query: 85  ARGTLFAMEKGKVKITVEK 103
              TLFA+  G VK   + 
Sbjct: 54  KDHTLFALVDGYVKFEKKP 72

Length = 80

>gnl|CDD|223289 COG0211, RpmA, Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 33/75 (44%), Positives = 41/75 (54%), Gaps = 8/75 (10%)

Query: 25 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGF 83
           A KK G STRN   R +   R   G +K  G+ V+ GSI+     QR   +HPG+NVG 
Sbjct: 1  MAHKKGGGSTRNG--RDSESKRL--GVKKFGGQFVKAGSIIV---RQRGTKFHPGVNVGR 53

Query: 84 GARGTLFAMEKGKVK 98
          G   TLFA+  G VK
Sbjct: 54 GKDHTLFALVDGVVK 68

Length = 87

>gnl|CDD|232803 TIGR00062, L27, ribosomal protein L27

 Score = 47.0 bits (112), Expect = 2e-07
 Identities = 30/75 (40%), Positives = 38/75 (50%), Gaps = 8/75 (10%)

Query: 25 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGF 83
           A KK   ST+N   R +   R   G ++  G+ V  GSI+     QR   +HPG NVG 
Sbjct: 1  MATKKGVGSTKNG--RDSEAKRL--GVKRAGGQFVRAGSIIV---RQRGTKFHPGNNVGM 53

Query: 84 GARGTLFAMEKGKVK 98
          G   TLFA+  G VK
Sbjct: 54 GKDHTLFALSDGVVK 68

Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 83

>gnl|CDD|235464 PRK05435, rpmA, 50S ribosomal protein L27; Validated

 Score = 43.1 bits (103), Expect = 4e-06
 Identities = 31/74 (41%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
          A KK G STRN   R +   R   G ++  G+ V+ G+I+     QR   +HPG+NVG G
Sbjct: 2  AHKKGGGSTRNG--RDSESKRL--GVKRFGGQFVKAGNIIV---RQRGTKFHPGVNVGRG 54

Query: 85 ARGTLFAMEKGKVK 98
             TLFA+  G VK
Sbjct: 55 KDHTLFALVDGVVK 68

Length = 82

>gnl|CDD|214370 CHL00121, rpl27, ribosomal protein L27; Reviewed

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 30/74 (40%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
          A KK   ST+N   R ++  R   G ++  GE V  G+IL     QR   + PGLNVG G
Sbjct: 2  AHKKGAGSTKNG--RDSNAKRL--GVKRFGGEKVSAGNILI---RQRGTKFKPGLNVGCG 54

Query: 85 ARGTLFAMEKGKVK 98
             TL+A+  G VK
Sbjct: 55 KDFTLYALIDGFVK 68

Length = 86

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	206
KOG4600|consensus	144		100.0
COG0211	87	RpmA Ribosomal protein L27 [Translation, ribosomal	100.0
CHL00121	86	rpl27 ribosomal protein L27; Reviewed	100.0
PF01016	81	Ribosomal_L27: Ribosomal L27 protein; InterPro: IP	100.0
PRK05435	82	rpmA 50S ribosomal protein L27; Validated	100.0
TIGR00062	83	L27 ribosomal protein L27. Eubacterial, chloroplas	100.0
COG0211	87	RpmA Ribosomal protein L27 [Translation, ribosomal	99.88
PRK05435	82	rpmA 50S ribosomal protein L27; Validated	99.87
CHL00121	86	rpl27 ribosomal protein L27; Reviewed	99.87
TIGR00062	83	L27 ribosomal protein L27. Eubacterial, chloroplas	99.87
KOG4600|consensus	144		99.87
PF01016	81	Ribosomal_L27: Ribosomal L27 protein; InterPro: IP	99.86
PF14382	39	ECR1_N: Exosome complex exonuclease RRP4 N-termina	95.87
COG1096	188	Predicted RNA-binding protein (consists of S1 doma	94.11
PRK09521	189	exosome complex RNA-binding protein Csl4; Provisio	92.91
PRK04163	235	exosome complex RNA-binding protein Rrp4; Provisio	81.09

>KOG4600|consensus

Probab=100.00  E-value=2.4e-41  Score=275.22  Aligned_cols=129  Identities=31%  Similarity=0.365  Sum_probs=112.4

Q ss_pred             chhhhhhhhcccCCcc-cceeeeeeecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCe
Q psy7634           3 LSLVNSFKNLLTTSQP-VCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNV   81 (206)
Q Consensus         3 ~sl~~~~~~l~~~~~~-~~~~vr~A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NV   81 (206)
                      .+|+++-..+...++. ...++|+|+||++|||+| +|||+|+|   ||||+++||+|.||+|||||  |||+||||+||
T Consensus         5 l~l~tas~~~~~~ss~~~~l~vR~AtKk~aGStKN-~~dS~grr---lGvKk~egq~V~~G~IIvrQ--RgtkfHPG~nV   78 (144)
T KOG4600|consen    5 LRLSTASSSLDGSSSGLSFLAVRWATKKGAGSTKN-GRDSAGRR---LGVKKYEGQSVIPGNIIVRQ--RGTKFHPGDNV   78 (144)
T ss_pred             eecchhhhhhcCCCCcceeeeeeeecccccCcccc-CCCCCccc---ccceecCCeeeecccEEEEe--cccccCCCccc
Confidence            4566666666655555 488999999999999999 99999999   99999999999999999999  99999999999


Q ss_pred             eecCCceEEEeeceEEEEEEeeccCCccchhhhhhccCCCCCCCCeeEEEeeecCccccccccchhhhhhhhccc
Q psy7634          82 GFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQHSRFRLVDEPRVRNAAKKT  156 (206)
Q Consensus        82 g~GkD~TLfAl~~G~V~f~~~~~~p~~~~~w~~~~~~grkg~~~~Kk~VnViP~~~~~~FkLvDe~~vR~a~kk~  156 (206)
                      |||+|||||||++|+|+|++++++|                   .|++|+|.|..........+++.||--.|.-
T Consensus        79 GiGKDhtifaL~eG~Vrf~k~~~~~-------------------~Rk~i~V~~~~~~~l~~~~~k~~vr~~~k~~  134 (144)
T KOG4600|consen   79 GIGKDHTIFALEEGRVRFEKSKITP-------------------PRKWIGVDPRGGLPLPPPYYKATVRRVTKLP  134 (144)
T ss_pred             ccCCcceEEEeeccEEEEEEccCCC-------------------CcceEEEeecCCccCCCccchhhhhhhcccc
Confidence            9999999999999999999997644                   3799999999888777778888887655443

>COG0211 RpmA Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-41  Score=255.33  Aligned_cols=86  Identities=41%  Similarity=0.584  Sum_probs=82.1

Q ss_pred             eeecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeec
Q psy7634          25 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKC  104 (206)
Q Consensus        25 ~A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~  104 (206)
                      |||||++|||+| ||||++||   ||+|++|||+|.+|+|||||  |||+||||+|||||+||||||++||+|+|+..  
T Consensus         1 mA~KKg~GSt~N-gRDS~~kr---LGvK~~~Gq~v~aG~IivRQ--RGTk~hpG~NVG~GkDhTlFAl~dG~Vkf~~k--   72 (87)
T COG0211           1 MAHKKGGGSTRN-GRDSESKR---LGVKKFGGQFVKAGSIIVRQ--RGTKFHPGVNVGRGKDHTLFALVDGVVKFETK--   72 (87)
T ss_pred             Cccccccccccc-Cccccccc---cceeeeCCeEEecccEEEEe--ccccccCCcccccCCCceEEEeeccEEEEEEc--
Confidence            899999999999 99999999   99999999999999999999  99999999999999999999999999999986  


Q ss_pred             cCCccchhhhhhccCCCCCCCCeeEEEeeecCc
Q psy7634         105 NLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQ  137 (206)
Q Consensus       105 ~p~~~~~w~~~~~~grkg~~~~Kk~VnViP~~~  137 (206)
                                       +  ..|+||+|+|+++
T Consensus        73 -----------------~--~~rk~vsV~~~~~   86 (87)
T COG0211          73 -----------------G--KNRKYVSVVPEAE   86 (87)
T ss_pred             -----------------c--CCccEEEEEeecc
Confidence                             1  2689999999865

>CHL00121 rpl27 ribosomal protein L27; Reviewed

Probab=100.00  E-value=9e-40  Score=247.80  Aligned_cols=85  Identities=35%  Similarity=0.434  Sum_probs=80.6

Q ss_pred             eeecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeec
Q psy7634          25 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKC  104 (206)
Q Consensus        25 ~A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~  104 (206)
                      |||||++|||+| ||||+|||   ||+|++|||+|.||+|||||  |||+||||+||+||+||||||+++|+|+|++.  
T Consensus         1 mA~KK~~GStkN-grdS~~Kr---LGvK~~~gq~V~~G~IivRQ--RGtk~hPG~NVg~GrD~TlfAl~~G~V~f~~~--   72 (86)
T CHL00121          1 MAHKKGAGSTKN-GRDSNAKR---LGVKRFGGEKVSAGNILIRQ--RGTKFKPGLNVGCGKDFTLYALIDGFVKFKKK--   72 (86)
T ss_pred             CCcccccCcCCC-CCCCCccc---ceeEEcCCEEEcCCcEEEEc--CCCeECCCCcccccCCceEEEccceEEEEEEe--
Confidence            899999999999 99999999   99999999999999999999  99999999999999999999999999999976  


Q ss_pred             cCCccchhhhhhccCCCCCCCCeeEEEeeecC
Q psy7634         105 NLNWKHTWVIANYSGQEGLPIYKKHIHVLPEE  136 (206)
Q Consensus       105 ~p~~~~~w~~~~~~grkg~~~~Kk~VnViP~~  136 (206)
                                         ...+++|+|+|..
T Consensus        73 -------------------~~~~~~vsv~~~~   85 (86)
T CHL00121         73 -------------------NKKQKSINVINIV   85 (86)
T ss_pred             -------------------CCCCEEEEEeecc
Confidence                               2367899999964

>PF01016 Ribosomal_L27: Ribosomal L27 protein; InterPro: IPR001684 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=1.4e-39  Score=244.71  Aligned_cols=81  Identities=40%  Similarity=0.568  Sum_probs=72.5

Q ss_pred             eecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeecc
Q psy7634          26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCN  105 (206)
Q Consensus        26 A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~  105 (206)
                      ||||++|||+| +|||+|||   ||||++|||+|.||+|||||  |||+||||+||+||+||||||++||+|+|+++   
T Consensus         1 A~KK~~GSt~N-grdS~~kr---lGvK~~~G~~V~~G~IivRQ--Rgtk~hPG~NVg~GrD~TLfAl~~G~V~f~~~---   71 (81)
T PF01016_consen    1 AHKKGGGSTKN-GRDSNPKR---LGVKKFGGQFVKAGNIIVRQ--RGTKFHPGENVGMGRDHTLFALVDGRVKFTKE---   71 (81)
T ss_dssp             --SSSSSSSS---S-STTTT---SEESSSTTCEESSTSEEEEB--SSSSSEEBTTEEEETTSEEEESSSCEEEEEEE---
T ss_pred             CCccccccccC-CCCCCCcc---cEEEEeCCEEEcCCCEEEEe--CCCcCcCCCCEEECCCCcEEEecCEEEEEEEe---
Confidence            89999999999 99999999   99999999999999999999  99999999999999999999999999999998   


Q ss_pred             CCccchhhhhhccCCCCCCCCeeEEEee
Q psy7634         106 LNWKHTWVIANYSGQEGLPIYKKHIHVL  133 (206)
Q Consensus       106 p~~~~~w~~~~~~grkg~~~~Kk~VnVi  133 (206)
                                        ...|+||+|+
T Consensus        72 ------------------~~~rk~v~V~   81 (81)
T PF01016_consen   72 ------------------KRNRKYVSVV   81 (81)
T ss_dssp             ------------------TTTEEEEEE-
T ss_pred             ------------------CCCCEEEEeC
Confidence                              2368999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L27 is a protein from the large (50S) subunit; it is essential for ribosome function, but its exact role is unclear. It belongs to a family of ribosomal proteins, examples of which are found in bacteria, chloroplasts of plants and red algae and the mitochondria of fungi (e.g. MRP7 from yeast mitochondria). The schematic relationship between these groups of proteins is shown below. Bacterial L27 Nxxxxxxxxx Algal L27 Nxxxxxxxxx Plant L27 tttttNxxxxxxxxxxxxx Yeast MRP7 tttNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 't': transit peptide. 'N': N-terminal of mature protein. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZJQ_T 2ZJP_T 3PIP_T 3DLL_T 3PIO_T 1Y69_U 3CF5_T 2ZJR_T 1VSA_U 3PYT_W ....

>PRK05435 rpmA 50S ribosomal protein L27; Validated

Probab=100.00  E-value=4.5e-39  Score=242.27  Aligned_cols=72  Identities=39%  Similarity=0.552  Sum_probs=71.0

Q ss_pred             eeecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEe
Q psy7634          25 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVE  102 (206)
Q Consensus        25 ~A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~  102 (206)
                      |||||++|||+| +|||+|||   ||||+++||+|.||+|||||  |||+||||+||+||+||||||+++|+|+|++.
T Consensus         1 mA~KK~~GStkN-grdS~~kr---LGvK~~~g~~V~~G~IivRQ--RGtk~~PG~nVg~GrD~TlfA~~~G~V~f~~~   72 (82)
T PRK05435          1 MAHKKGGGSTRN-GRDSESKR---LGVKRFGGQFVKAGNIIVRQ--RGTKFHPGVNVGRGKDHTLFALVDGVVKFERK   72 (82)
T ss_pred             CCcccccCcCCC-CCCCCccc---ceeEecCCEEEcCCcEEEEe--CCCeECCCCCEeecCCceEEEecceEEEEEEc
Confidence            899999999999 99999999   99999999999999999999  99999999999999999999999999999975

>TIGR00062 L27 ribosomal protein L27

Probab=100.00  E-value=7.5e-39  Score=241.58  Aligned_cols=72  Identities=36%  Similarity=0.523  Sum_probs=71.1

Q ss_pred             eeecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEe
Q psy7634          25 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVE  102 (206)
Q Consensus        25 ~A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~  102 (206)
                      |||||++|||+| +|||+|||   ||+|+++||+|.||+|||||  |||+||||+||+||+||||||+++|+|+|++.
T Consensus         1 ~A~Kk~~GSt~N-grdS~~kr---LGvK~~~gq~V~~G~IivRQ--RGtk~hPG~nVg~GrD~TlfAl~~G~V~f~~~   72 (83)
T TIGR00062         1 MATKKGVGSTKN-GRDSEAKR---LGVKRAGGQFVRAGSIIVRQ--RGTKFHPGNNVGMGKDHTLFALSDGVVKFEKK   72 (83)
T ss_pred             CCcccccCcCCC-CCCCCCcc---ceeEecCCEEEcCCcEEEEc--CCceECCCCcccccCCCeEEEecceEEEEEEc
Confidence            899999999999 99999999   99999999999999999999  99999999999999999999999999999986

Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.

>COG0211 RpmA Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.3e-23  Score=159.33  Aligned_cols=50  Identities=42%  Similarity=0.634  Sum_probs=49.3

Q ss_pred             hhhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         151 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       151 ~a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      |||||++|||+|+  |||.++||  |+|++|||+|.||+||||||||+  ||||.|
T Consensus         1 mA~KKg~GSt~Ng--RDS~~krL--GvK~~~Gq~v~aG~IivRQRGTk--~hpG~N   50 (87)
T COG0211           1 MAHKKGGGSTRNG--RDSESKRL--GVKKFGGQFVKAGSIIVRQRGTK--FHPGVN   50 (87)
T ss_pred             CcccccccccccC--cccccccc--ceeeeCCeEEecccEEEEecccc--ccCCcc
Confidence            7999999999999  89999999  99999999999999999999999  999998

>PRK05435 rpmA 50S ribosomal protein L27; Validated

Probab=99.87  E-value=5e-23  Score=155.41  Aligned_cols=50  Identities=38%  Similarity=0.622  Sum_probs=49.2

Q ss_pred             hhhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         151 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       151 ~a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      |||||++|||+|+  |||+++||  |||+++||+|.||+||||||||+  ||||+|
T Consensus         1 mA~KK~~GStkNg--rdS~~krL--GvK~~~g~~V~~G~IivRQRGtk--~~PG~n   50 (82)
T PRK05435          1 MAHKKGGGSTRNG--RDSESKRL--GVKRFGGQFVKAGNIIVRQRGTK--FHPGVN   50 (82)
T ss_pred             CCcccccCcCCCC--CCCCcccc--eeEecCCEEEcCCcEEEEeCCCe--ECCCCC
Confidence            7999999999999  89999999  99999999999999999999999  999998

>CHL00121 rpl27 ribosomal protein L27; Reviewed

Probab=99.87  E-value=5.3e-23  Score=156.40  Aligned_cols=50  Identities=38%  Similarity=0.557  Sum_probs=49.2

Q ss_pred             hhhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         151 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       151 ~a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      |||||++|||+|+  |||+++||  |||++|||+|.||+||||||||+  ||||+|
T Consensus         1 mA~KK~~GStkNg--rdS~~KrL--GvK~~~gq~V~~G~IivRQRGtk--~hPG~N   50 (86)
T CHL00121          1 MAHKKGAGSTKNG--RDSNAKRL--GVKRFGGEKVSAGNILIRQRGTK--FKPGLN   50 (86)
T ss_pred             CCcccccCcCCCC--CCCCcccc--eeEEcCCEEEcCCcEEEEcCCCe--ECCCCc
Confidence            7999999999999  89999999  99999999999999999999999  999998

>TIGR00062 L27 ribosomal protein L27

Probab=99.87  E-value=5.9e-23  Score=155.34  Aligned_cols=50  Identities=36%  Similarity=0.540  Sum_probs=49.2

Q ss_pred             hhhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         151 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       151 ~a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      |||||++|||+|+  |||+++||  |||+++||+|.||+||||||||+  ||||+|
T Consensus         1 ~A~Kk~~GSt~Ng--rdS~~krL--GvK~~~gq~V~~G~IivRQRGtk--~hPG~n   50 (83)
T TIGR00062         1 MATKKGVGSTKNG--RDSEAKRL--GVKRAGGQFVRAGSIIVRQRGTK--FHPGNN   50 (83)
T ss_pred             CCcccccCcCCCC--CCCCCccc--eeEecCCEEEcCCcEEEEcCCce--ECCCCc
Confidence            7999999999999  89999999  99999999999999999999999  999998

Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.

>KOG4600|consensus

Probab=99.87  E-value=6.1e-23  Score=167.64  Aligned_cols=56  Identities=39%  Similarity=0.530  Sum_probs=53.9

Q ss_pred             chhhhhhhhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         145 DEPRVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       145 De~~vR~a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      ..++||+|+||++|||+|+  +||+|+||  |+|+++||+|.||+||+||||||  ||||.|
T Consensus        22 ~~l~vR~AtKk~aGStKN~--~dS~grrl--GvKk~egq~V~~G~IIvrQRgtk--fHPG~n   77 (144)
T KOG4600|consen   22 SFLAVRWATKKGAGSTKNG--RDSAGRRL--GVKKYEGQSVIPGNIIVRQRGTK--FHPGDN   77 (144)
T ss_pred             eeeeeeeecccccCccccC--CCCCcccc--cceecCCeeeecccEEEEecccc--cCCCcc
Confidence            4568999999999999999  89999999  99999999999999999999999  999987

>PF01016 Ribosomal_L27: Ribosomal L27 protein; InterPro: IPR001684 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.86  E-value=1.3e-22  Score=152.88  Aligned_cols=49  Identities=39%  Similarity=0.599  Sum_probs=43.6

Q ss_pred             hhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         152 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       152 a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      ||||++|||+|+  |||+++||  |||++|||+|.||+||||||||+  ||||+|
T Consensus         1 A~KK~~GSt~Ng--rdS~~krl--GvK~~~G~~V~~G~IivRQRgtk--~hPG~N   49 (81)
T PF01016_consen    1 AHKKGGGSTKNG--RDSNPKRL--GVKKFGGQFVKAGNIIVRQRGTK--FHPGEN   49 (81)
T ss_dssp             --SSSSSSSS----S-STTTTS--EESSSTTCEESSTSEEEEBSSSS--SEEBTT
T ss_pred             CCccccccccCC--CCCCCccc--EEEEeCCEEEcCCCEEEEeCCCc--CcCCCC
Confidence            899999999998  89999999  99999999999999999999999  999998

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L27 is a protein from the large (50S) subunit; it is essential for ribosome function, but its exact role is unclear. It belongs to a family of ribosomal proteins, examples of which are found in bacteria, chloroplasts of plants and red algae and the mitochondria of fungi (e.g. MRP7 from yeast mitochondria). The schematic relationship between these groups of proteins is shown below. Bacterial L27 Nxxxxxxxxx Algal L27 Nxxxxxxxxx Plant L27 tttttNxxxxxxxxxxxxx Yeast MRP7 tttNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 't': transit peptide. 'N': N-terminal of mature protein. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZJQ_T 2ZJP_T 3PIP_T 3DLL_T 3PIO_T 1Y69_U 3CF5_T 2ZJR_T 1VSA_U 3PYT_W ....

>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C

Probab=95.87  E-value=0.015  Score=38.43  Aligned_cols=38  Identities=34%  Similarity=0.478  Sum_probs=32.4

Q ss_pred             EEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEE
Q psy7634          58 VVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKIT  100 (206)
Q Consensus        58 ~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~  100 (206)
                      .|.||+.|...    ..|.||.++.+ +|..|||.+-|.|+..
T Consensus         1 iV~PG~~l~~~----~e~~~G~GTY~-~~g~I~asv~G~v~~~   38 (39)
T PF14382_consen    1 IVVPGDRLGSS----EEYMPGHGTYV-RDGNIYASVAGTVKID   38 (39)
T ss_dssp             EE-TT-EEEET----TTSEESTTEEE-ETTEEEESSSEEEEEE
T ss_pred             CCCCCCEeecC----CCEecCCCEEE-eCCEEEEEeeEEEEEc
Confidence            48899999987    58999999999 8999999999999864

>COG1096 Predicted RNA-binding protein (consists of S1 domain and a Zn-ribbon domain) [Translation, ribosomal structure and biogenesis]

Probab=94.11  E-value=0.13  Score=44.64  Aligned_cols=45  Identities=22%  Similarity=0.316  Sum_probs=40.3

Q ss_pred             eeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEe
Q psy7634          53 KQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVE  102 (206)
Q Consensus        53 ~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~  102 (206)
                      ..+|.+|.||+.|..+    -.|.||+++.-- |+.|+|...|.+.+...
T Consensus         2 ~~~g~~v~PGd~~a~~----EE~~~G~gt~~~-~g~i~Aa~~G~~~~d~~   46 (188)
T COG1096           2 VKDGTFVLPGDVLAVI----EEFLPGEGTYEE-GGEIRAAATGVVRRDDK   46 (188)
T ss_pred             cccCcEEcCcceeeee----eeeecCCCeEeE-CCEEEEeecccEEEccc
Confidence            3578999999999999    799999999876 99999999999998754

>PRK09521 exosome complex RNA-binding protein Csl4; Provisional

Probab=92.91  E-value=0.2  Score=42.04  Aligned_cols=43  Identities=30%  Similarity=0.397  Sum_probs=36.9

Q ss_pred             CCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEe
Q psy7634          55 EGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVE  102 (206)
Q Consensus        55 ~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~  102 (206)
                      +++.|.||+.|.-.    ..|.||.|+.. .|.+|||.+-|.+.+..+
T Consensus         4 ~~~~V~PGe~l~~~----~e~~~G~Gty~-~~~~i~as~~G~~~id~~   46 (189)
T PRK09521          4 QGDLVLPGDYLAVI----EEYLPGEGTYE-DNGEVYASVVGKVFIDDI   46 (189)
T ss_pred             cCCEECCCCccccc----cceEcCCCEEe-eCCEEEEEeeEEEEEcCC
Confidence            67899999999765    46999999987 578899999999998643

>PRK04163 exosome complex RNA-binding protein Rrp4; Provisional

Probab=81.09  E-value=2.7  Score=36.76  Aligned_cols=44  Identities=18%  Similarity=0.310  Sum_probs=37.5

Q ss_pred             EeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEE
Q psy7634          52 RKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITV  101 (206)
Q Consensus        52 K~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~  101 (206)
                      -..++..|.||+.|.-+     .|.||.|+.. .|..|+|.+-|.+.+..
T Consensus         4 ~~~~~~~V~PGd~l~~~-----~~~~G~Gty~-~~g~i~As~~G~~~~~~   47 (235)
T PRK04163          4 FVEDRKIVVPGDLLAEG-----EFKAGRGTYK-ENGKIYSTVVGLVDIKD   47 (235)
T ss_pred             eeeCCcEECCCCCcCcC-----CeecCCceEE-eCCEEEEEEeEEEEEEC
Confidence            35678899999999644     6999999987 78999999999999874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	206
2ftc_O	69	Structural Model For The Large Subunit Of The Mamma		9e-05

>pdb|2FTC|O Chain O, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 69

Iteration: 1
 Score = 43.5 bits (101), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/73 (39%), Positives = 45/73 (61%), Gaps = 5/73 (6%)
Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGA 85
          A+KK+G S++N    K+SG R  +G +K EG  V  G+I  I+  +   +HPG +VG G 
Sbjct: 1  ASKKSGGSSKNLG-GKSSGRR--QGIKKMEGHYVHAGNI--IATQRHFRWHPGAHVGVGK 55
Query: 86 RGTLFAMEKGKVK 98
             L+A+E+G V+
Sbjct: 56 NKCLYALEEGIVR 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	206
3bbo_X	198	Ribosomal protein L27; large ribosomal subunit, sp	4e-10
2ftc_O	69	L27MT, MRP-L27, mitochondrial 39S ribosomal protei	1e-09
3v2d_0	85	50S ribosomal protein L27; ribosome associated inh	6e-08
2zjr_T	91	50S ribosomal protein L27; ribosome, large ribosom	8e-08
3r8s_W	76	50S ribosomal protein L27; protein biosynthesis, R	2e-05

>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 198

 Score = 56.2 bits (135), Expect = 4e-10
 Identities = 36/154 (23%), Positives = 58/154 (37%), Gaps = 34/154 (22%)

Query: 12  LLTTSQPVCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQ 71
           L     P+ +++ +A KK   ST+N   R + G R   G +    +V + G+I+     Q
Sbjct: 45  LENLQAPIPLTIESAHKKGAGSTKNG--RDSPGQRL--GVKIYGDQVAKPGAIIV---RQ 97

Query: 72  R-LDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKKHI 130
           R   +H G NVG G   T+F++  G VK      +                     +K I
Sbjct: 98  RGTKFHAGKNVGIGKDHTIFSLIDGLVKFEKFGPD---------------------RKKI 136

Query: 131 HVLPEEQHSRFRLVDEPRVRNAAKKTGTSTRNKP 164
            V P E        + P    A K+     + + 
Sbjct: 137 SVYPREIVP-----ENPNSYRARKRENFRLQREK 165

>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O Length = 69

 Score = 51.5 bits (124), Expect = 1e-09
 Identities = 30/74 (40%), Positives = 44/74 (59%), Gaps = 7/74 (9%)

Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
          A+KK+G S++N    K+SG R   G +K EG  V  G+I+     QR   +HPG +VG G
Sbjct: 1  ASKKSGGSSKNLG-GKSSGRRQ--GIKKMEGHYVHAGNIIA---TQRHFRWHPGAHVGVG 54

Query: 85 ARGTLFAMEKGKVK 98
              L+A+E+G V+
Sbjct: 55 KNKCLYALEEGIVR 68

>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ... Length = 85

 Score = 47.7 bits (114), Expect = 6e-08
 Identities = 31/74 (41%), Positives = 39/74 (52%), Gaps = 8/74 (10%)

Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
          A KK   STRN   R +   R   G ++ EG+VV  G+IL     QR   + PG NVG G
Sbjct: 2  AHKKGLGSTRNG--RDSQAKRL--GVKRYEGQVVRAGNILV---RQRGTRFKPGKNVGMG 54

Query: 85 ARGTLFAMEKGKVK 98
             TLFA+  G V+
Sbjct: 55 RDFTLFALVDGVVE 68

>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ... Length = 91

 Score = 47.3 bits (113), Expect = 8e-08
 Identities = 28/74 (37%), Positives = 37/74 (50%), Gaps = 8/74 (10%)

Query: 26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
          A KK   S++N   R ++      G +K  GEVV+ G+IL     QR   +  G  VG G
Sbjct: 2  AHKKGVGSSKNG--RDSNPKYL--GVKKFGGEVVKAGNILV---RQRGTKFKAGQGVGMG 54

Query: 85 ARGTLFAMEKGKVK 98
             TLFA+  GKV 
Sbjct: 55 RDHTLFALSDGKVV 68

>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W 2qoz_W* ... Length = 76

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 23/50 (46%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 50 GFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFGARGTLFAMEKGKVK 98
          G ++  GE V  GSI+     QR   +H G NVG G   TLFA   GKVK
Sbjct: 13 GVKRFGGESVLAGSIIV---RQRGTKFHAGANVGCGRDHTLFAKADGKVK 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	206
2zjr_T	91	50S ribosomal protein L27; ribosome, large ribosom	100.0
3v2d_0	85	50S ribosomal protein L27; ribosome associated inh	100.0
3bbo_X	198	Ribosomal protein L27; large ribosomal subunit, sp	100.0
2ftc_O	69	L27MT, MRP-L27, mitochondrial 39S ribosomal protei	100.0
3r8s_W	76	50S ribosomal protein L27; protein biosynthesis, R	100.0
3v2d_0	85	50S ribosomal protein L27; ribosome associated inh	99.89
2zjr_T	91	50S ribosomal protein L27; ribosome, large ribosom	99.88
2ftc_O	69	L27MT, MRP-L27, mitochondrial 39S ribosomal protei	99.87
3bbo_X	198	Ribosomal protein L27; large ribosomal subunit, sp	99.86
3r8s_W	76	50S ribosomal protein L27; protein biosynthesis, R	99.74
2xhc_A	352	Transcription antitermination protein NUSG; 2.45A	95.66
2xha_A	193	NUSG, transcription antitermination protein NUSG;	94.67
3m7n_A	179	Putative uncharacterized protein AF_0206; exosome,	85.01

>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...

Probab=100.00  E-value=2.5e-42  Score=263.01  Aligned_cols=87  Identities=31%  Similarity=0.422  Sum_probs=80.3

Q ss_pred             eeecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeec
Q psy7634          25 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKC  104 (206)
Q Consensus        25 ~A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~  104 (206)
                      |||||++|||+| ||||++||   ||+|++|||+|.||+|||||  |||+||||+|||||+||||||++||+|+|++.  
T Consensus         1 mAhKK~~GSt~N-GRdS~~kr---LGvK~~gGq~V~aG~IivRQ--RGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~--   72 (91)
T 2zjr_T            1 MAHKKGVGSSKN-GRDSNPKY---LGVKKFGGEVVKAGNILVRQ--RGTKFKAGQGVGMGRDHTLFALSDGKVVFINK--   72 (91)
T ss_dssp             -CCSSCSSCSSC-CCCCCCCC---CCCSSCTTCEECSSCEEECC--SSSSSEECTTEECCTTSCEEESSCEEEEEEEE--
T ss_pred             CCcccCCCCCCC-CCCCCCce---eeEEecCCeEEcCCeEEEec--CCCEEcCCCCEEEcCCCcEEeccceEEEEEEc--
Confidence            899999999999 99999999   99999999999999999999  99999999999999999999999999999975  


Q ss_pred             cCCccchhhhhhccCCCCCCCCeeEEEeeecCcc
Q psy7634         105 NLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQH  138 (206)
Q Consensus       105 ~p~~~~~w~~~~~~grkg~~~~Kk~VnViP~~~~  138 (206)
                                         ...|+||+|+|++.+
T Consensus        73 -------------------~~~r~~V~V~p~~~~   87 (91)
T 2zjr_T           73 -------------------GKGARFISIEAAQTE   87 (91)
T ss_dssp             -------------------TTTEEEEEECCCC--
T ss_pred             -------------------CCCcEEEEEEeChhh
Confidence                               126899999997654

>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...

Probab=100.00  E-value=3e-42  Score=259.70  Aligned_cols=84  Identities=36%  Similarity=0.451  Sum_probs=72.5

Q ss_pred             eeecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeec
Q psy7634          25 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKC  104 (206)
Q Consensus        25 ~A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~  104 (206)
                      |||||++|||+| ||||++||   ||+|++|||+|.||+|||||  |||+||||+|||||+||||||++||+|+|++.  
T Consensus         1 MAhKK~gGStkN-GrdS~~kr---LGvK~~~Gq~V~aG~IivRQ--RGtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~--   72 (85)
T 3v2d_0            1 MAHKKGLGSTRN-GRDSQAKR---LGVKRYEGQVVRAGNILVRQ--RGTRFKPGKNVGMGRDFTLFALVDGVVEFQDR--   72 (85)
T ss_dssp             --------CCSC-CCCCCCCC---CEESSCTTCEECTTCEEEEC--SSCSEEECTTEEECTTCCEEESSSEEEEEEEC--
T ss_pred             CCcccCCCCCCC-CCCCCCcc---ceeEecCCeEEcCCeEEEec--CCccCcCCCCEeEcCCCeEEEecCEEEEEEEc--
Confidence            899999999999 99999999   99999999999999999999  99999999999999999999999999999975  


Q ss_pred             cCCccchhhhhhccCCCCCCCCeeEEEeeec
Q psy7634         105 NLNWKHTWVIANYSGQEGLPIYKKHIHVLPE  135 (206)
Q Consensus       105 ~p~~~~~w~~~~~~grkg~~~~Kk~VnViP~  135 (206)
                                         ...|+||+|+|+
T Consensus        73 -------------------~~~r~~VsV~p~   84 (85)
T 3v2d_0           73 -------------------GRLGRYVHVRPL   84 (85)
T ss_dssp             -------------------GGGCEEEEEEEC
T ss_pred             -------------------CCCCEEEEEEEC
Confidence                               126899999995

>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=5.3e-42  Score=289.81  Aligned_cols=94  Identities=29%  Similarity=0.410  Sum_probs=80.5

Q ss_pred             cceeeeeeecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEE
Q psy7634          19 VCMSVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVK   98 (206)
Q Consensus        19 ~~~~vr~A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~   98 (206)
                      +..+|||||||++|||+| ||||+|||   ||+|++|||+|.||+|||||  |||+||||+|||||+||||||++||+|+
T Consensus        52 ~~l~VRmAhKKggGSTkN-GRDS~~KR---LGVK~~gGq~V~aGnIIVRQ--RGTkfhPG~NVG~GkDhTLFAl~~G~Vk  125 (198)
T 3bbo_X           52 IPLTIESAHKKGAGSTKN-GRDSPGQR---LGVKIYGDQVAKPGAIIVRQ--RGTKFHAGKNVGIGKDHTIFSLIDGLVK  125 (198)
T ss_dssp             -------CCCCSSCCCCC-CCCCCCCC---CSCSSSBCCSSCSCCSSSSC--CCCSSCCCCSSSSCCCCCSBCCSCCCCC
T ss_pred             hhhheeeeeccCCCCCCC-CCCCCCce---eeEEecCCeEeccCcEEEec--cCceEcCCCCeeecCCCceEeccceEEE
Confidence            456899999999999999 99999999   99999999999999999999  9999999999999999999999999999


Q ss_pred             EEEeeccCCccchhhhhhccCCCCCCCCeeEEEeeecCccc
Q psy7634          99 ITVEKCNLNWKHTWVIANYSGQEGLPIYKKHIHVLPEEQHS  139 (206)
Q Consensus        99 f~~~~~~p~~~~~w~~~~~~grkg~~~~Kk~VnViP~~~~~  139 (206)
                      |++.                   +  ..|+||+|+|++.++
T Consensus       126 F~~~-------------------~--~~Rk~VsV~p~~~~~  145 (198)
T 3bbo_X          126 FEKF-------------------G--PDRKKISVYPREIVP  145 (198)
T ss_dssp             SSSS-------------------C--CCCSCCCSSCCCCC-
T ss_pred             EEEc-------------------C--CCcEEEEEEeCCccc
Confidence            9853                   1  268999999976543

>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O

Probab=100.00  E-value=3.3e-38  Score=229.95  Aligned_cols=69  Identities=35%  Similarity=0.626  Sum_probs=68.3

Q ss_pred             eecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEE
Q psy7634          26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKI   99 (206)
Q Consensus        26 A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f   99 (206)
                      ||||++|||+|.+|||++||   ||+|++|||+|.||+|||||  |||+||||+|||||+||||||+++|+|+|
T Consensus         1 A~KK~~GSt~N~grdS~~kr---lGvK~~~Gq~V~aG~IivrQ--Rgtk~hPG~nVg~GkD~TLfAl~~G~V~f   69 (69)
T 2ftc_O            1 ASKKSGGSSKNLGGKSSGRR---QGIKKMEGHYVHAGNIIATQ--RHFRWHPGAHVGVGKNKCLYALEEGIVRY   69 (69)
T ss_pred             CcccccCcccCCCCCCCCce---eeEEecCCeEecCCeEEEec--CCCeEcCCCCeeecCCCcEEEccceEEeC
Confidence            89999999999999999999   99999999999999999999  99999999999999999999999999997

>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...

Probab=100.00  E-value=4.5e-37  Score=227.61  Aligned_cols=76  Identities=38%  Similarity=0.528  Sum_probs=71.3

Q ss_pred             cCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeeccCCccchhh
Q psy7634          34 TRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWV  113 (206)
Q Consensus        34 t~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~p~~~~~w~  113 (206)
                      |+| ||||++||   ||+|++|||+|.||+|||||  |||+||||+|||||+||||||++||+|+|+...          
T Consensus         1 t~N-GRDS~~kr---LGvK~~~Gq~V~aG~IivRQ--RGtk~hPG~NVG~GkD~TLfAl~~G~V~f~~~~----------   64 (76)
T 3r8s_W            1 TRN-GRDSEAKR---LGVKRFGGESVLAGSIIVRQ--RGTKFHAGANVGCGRDHTLFAKADGKVKFEVKG----------   64 (76)
T ss_dssp             CCC-CCCCCCCC---CEESSCTTCEECTTCEEEEC--SSCSSEECTTEEECTTSCEEESSSEEEEEEEET----------
T ss_pred             CCC-CCCCCccc---ceEEecCCeEEecCcEEEec--cCccCcCCCCeeecCCCeEEEccCEEEEEEEeC----------
Confidence            689 99999999   99999999999999999999  999999999999999999999999999999751          


Q ss_pred             hhhccCCCCCCCCeeEEEeeec
Q psy7634         114 IANYSGQEGLPIYKKHIHVLPE  135 (206)
Q Consensus       114 ~~~~~grkg~~~~Kk~VnViP~  135 (206)
                                ...|+||+|+|+
T Consensus        65 ----------~~~r~~VsV~p~   76 (76)
T 3r8s_W           65 ----------PKNRKFISIEAE   76 (76)
T ss_dssp             ----------TTTEEEEEEECC
T ss_pred             ----------CCCCEEEEEEeC
Confidence                      236899999995

>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...

Probab=99.89  E-value=2e-24  Score=162.67  Aligned_cols=50  Identities=42%  Similarity=0.561  Sum_probs=41.5

Q ss_pred             hhhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         151 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       151 ~a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      |||||++|||+|+  |||+++||  |||++|||+|.||+||||||||+  ||||+|
T Consensus         1 MAhKK~gGStkNG--rdS~~krL--GvK~~~Gq~V~aG~IivRQRGtk--~hPG~N   50 (85)
T 3v2d_0            1 MAHKKGLGSTRNG--RDSQAKRL--GVKRYEGQVVRAGNILVRQRGTR--FKPGKN   50 (85)
T ss_dssp             --------CCSCC--CCCCCCCC--EESSCTTCEECTTCEEEECSSCS--EEECTT
T ss_pred             CCcccCCCCCCCC--CCCCCccc--eeEecCCeEEcCCeEEEecCCcc--CcCCCC
Confidence            8999999999999  89999999  99999999999999999999999  999998

>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...

Probab=99.88  E-value=4.9e-24  Score=162.41  Aligned_cols=50  Identities=32%  Similarity=0.401  Sum_probs=48.4

Q ss_pred             hhhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         151 NAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       151 ~a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      |||||++|||+|+  |||+++||  |||++|||+|.||+||||||||+  ||||+|
T Consensus         1 mAhKK~~GSt~NG--RdS~~krL--GvK~~gGq~V~aG~IivRQRGtk--~hPG~N   50 (91)
T 2zjr_T            1 MAHKKGVGSSKNG--RDSNPKYL--GVKKFGGEVVKAGNILVRQRGTK--FKAGQG   50 (91)
T ss_dssp             -CCSSCSSCSSCC--CCCCCCCC--CCSSCTTCEECSSCEEECCSSSS--SEECTT
T ss_pred             CCcccCCCCCCCC--CCCCCcee--eEEecCCeEEcCCeEEEecCCCE--EcCCCC
Confidence            7999999999999  99999999  99999999999999999999999  999998

>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O

Probab=99.87  E-value=2.7e-23  Score=151.48  Aligned_cols=49  Identities=43%  Similarity=0.657  Sum_probs=48.0

Q ss_pred             hhcccCccccC-CCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         152 AAKKTGTSTRN-KPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       152 a~kk~~gst~N-~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      ||||++|||+| +  |||+++||  |||++|||+|.||+||||||||+  ||||+|
T Consensus         1 A~KK~~GSt~N~g--rdS~~krl--GvK~~~Gq~V~aG~IivrQRgtk--~hPG~n   50 (69)
T 2ftc_O            1 ASKKSGGSSKNLG--GKSSGRRQ--GIKKMEGHYVHAGNIIATQRHFR--WHPGAH   50 (69)
T ss_pred             CcccccCcccCCC--CCCCCcee--eEEecCCeEecCCeEEEecCCCe--EcCCCC
Confidence            89999999999 6  99999999  99999999999999999999999  999998

>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.86  E-value=1.4e-23  Score=177.60  Aligned_cols=55  Identities=29%  Similarity=0.451  Sum_probs=48.5

Q ss_pred             hhhhhhhhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         146 EPRVRNAAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       146 e~~vR~a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      .++|||||||+||||+||  |||+++||  |||++|||+|.||+||||||||+  ||||.|
T Consensus        53 ~l~VRmAhKKggGSTkNG--RDS~~KRL--GVK~~gGq~V~aGnIIVRQRGTk--fhPG~N  107 (198)
T 3bbo_X           53 PLTIESAHKKGAGSTKNG--RDSPGQRL--GVKIYGDQVAKPGAIIVRQRGTK--FHAGKN  107 (198)
T ss_dssp             ------CCCCSSCCCCCC--CCCCCCCC--SCSSSBCCSSCSCCSSSSCCCCS--SCCCCS
T ss_pred             hhheeeeeccCCCCCCCC--CCCCCcee--eEEecCCeEeccCcEEEeccCce--EcCCCC
Confidence            348999999999999999  99999999  99999999999999999999999  999998

>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...

Probab=99.74  E-value=6.5e-19  Score=130.46  Aligned_cols=41  Identities=37%  Similarity=0.559  Sum_probs=40.0

Q ss_pred             ccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         160 TRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       160 t~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      |+|+  |||+++||  |||++|||+|.||+||||||||+  ||||+|
T Consensus         1 t~NG--RDS~~krL--GvK~~~Gq~V~aG~IivRQRGtk--~hPG~N   41 (76)
T 3r8s_W            1 TRNG--RDSEAKRL--GVKRFGGESVLAGSIIVRQRGTK--FHAGAN   41 (76)
T ss_dssp             CCCC--CCCCCCCC--EESSCTTCEECTTCEEEECSSCS--SEECTT
T ss_pred             CCCC--CCCCcccc--eEEecCCeEEecCcEEEeccCcc--CcCCCC
Confidence            6899  89999999  99999999999999999999999  999998

>2xhc_A Transcription antitermination protein NUSG; 2.45A {Thermotoga maritima}

Probab=95.66  E-value=0.0048  Score=55.93  Aligned_cols=32  Identities=19%  Similarity=0.158  Sum_probs=27.8

Q ss_pred             eeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEe
Q psy7634          53 KQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVE  102 (206)
Q Consensus        53 ~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~  102 (206)
                      +.+|+.|.+|+||+                  +|+.+.|-+||+|.|.++
T Consensus       125 v~~g~~v~~G~vla------------------k~~aiiaeidG~V~fg~~  156 (352)
T 2xhc_A          125 LRVGTKVKQGLPLS------------------KNEEYICELDGKIVEIER  156 (352)
T ss_dssp             CCTTCEECTTCBSB------------------SSSSCBCCSCEEEEEEEE
T ss_pred             cCCCCEEccCcEEe------------------cCceEEeccceEEEECCc
Confidence            44788888888887                  999999999999999874

>2xha_A NUSG, transcription antitermination protein NUSG; 1.91A {Thermotoga maritima}

Probab=94.67  E-value=0.015  Score=49.26  Aligned_cols=31  Identities=19%  Similarity=0.159  Sum_probs=26.8

Q ss_pred             eeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEE
Q psy7634          53 KQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITV  101 (206)
Q Consensus        53 ~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~  101 (206)
                      +.+|+.|.+|+||+                  +|+.+.|-+||+|.|.+
T Consensus        85 V~dG~~V~~GdvLA------------------Kd~AIiaEIdG~V~fgk  115 (193)
T 2xha_A           85 LRVGTKVKQGLPLS------------------KNEEYICELDGKIVEIE  115 (193)
T ss_dssp             CCTTCEECTTSBSS------------------TTSCSBCCSSEEEEEEE
T ss_pred             cCCCCEEcCCCEEe------------------cCCeEEEccceEEEECC
Confidence            45788888888877                  99999999999999986

>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A

Probab=85.01  E-value=1.3  Score=35.81  Aligned_cols=39  Identities=31%  Similarity=0.323  Sum_probs=33.4

Q ss_pred             eEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEE
Q psy7634          57 EVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKIT  100 (206)
Q Consensus        57 q~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~  100 (206)
                      +.|.||+.|.--    ..|.||.++..- |..|+|..-|.|.+.
T Consensus         2 ~iV~PGd~l~~~----~~~~~G~Gty~~-~~~i~as~~G~v~~~   40 (179)
T 3m7n_A            2 RFVMPGDRIGSA----EEYVKGEGVYEE-GGELFAAVAGKLIIK   40 (179)
T ss_dssp             CEECTTCEEEET----TTSEECTTEEEE-TTEEEESSSEEEEEE
T ss_pred             eEEcCCCCCCCC----CCEeccCCEEEe-CCEEEEEEEEEEEEe
Confidence            479999999865    358999999885 889999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	206
d2gycu1	84	b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherich	3e-11
d2zjrt1	84	b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococc	3e-11
d1v8qa_	66	b.84.4.1 (A:) Ribosomal protein L27 {Thermus therm	1e-07

>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]} Length = 84

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Escherichia coli [TaxId: 562]

 Score = 55.1 bits (133), Expect = 3e-11
 Identities = 34/79 (43%), Positives = 40/79 (50%), Gaps = 8/79 (10%)

Query: 26  AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
           A KK G STRN   R +   R   G ++  GE V  GSI+     QR   +H G NVG G
Sbjct: 1   AHKKAGGSTRNG--RDSEAKRL--GVKRFGGESVLAGSIIV---RQRGTKFHAGANVGCG 53

Query: 85  ARGTLFAMEKGKVKITVEK 103
              TLFA   GKVK  V+ 
Sbjct: 54  RDHTLFAKADGKVKFEVKG 72

>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]} Length = 84

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 55.1 bits (133), Expect = 3e-11
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 8/81 (9%)

Query: 26  AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFG 84
           A KK   S++N   R ++      G +K  GEVV+ G+IL     QR   +  G  VG G
Sbjct: 1   AHKKGVGSSKNG--RDSNPKYL--GVKKFGGEVVKAGNILV---RQRGTKFKAGQGVGMG 53

Query: 85  ARGTLFAMEKGKVKITVEKCN 105
              TLFA+  GKV    +   
Sbjct: 54  RDHTLFALSDGKVVFINKGKG 74

>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]} Length = 66

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Thermus thermophilus [TaxId: 274]

 Score = 45.0 bits (107), Expect = 1e-07
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 50  GFRKQEGEVVEKGSILYISYVQR-LDYHPGLNVGFGARGTLFAMEKGKVKITVEK 103
           G ++ EG+VV  G+IL     QR   + PG NVG G   TLFA+  G V+     
Sbjct: 3   GVKRYEGQVVRAGNILV---RQRGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	206
d2zjrt1	84	Ribosomal protein L27 {Deinococcus radiodurans [Ta	100.0
d2gycu1	84	Ribosomal protein L27 {Escherichia coli [TaxId: 56	100.0
d1v8qa_	66	Ribosomal protein L27 {Thermus thermophilus [TaxId	99.97
d2gycu1	84	Ribosomal protein L27 {Escherichia coli [TaxId: 56	99.85
d2zjrt1	84	Ribosomal protein L27 {Deinococcus radiodurans [Ta	99.85
d1v8qa_	66	Ribosomal protein L27 {Thermus thermophilus [TaxId	99.4
d2ba0a2	51	Exosome complex RNA-binding protein 1, ECR1 {Archa	94.8
d2je6i2	59	Exosome complex RNA-binding protein 1, ECR1 {Sulfo	92.52
d1ci3m2	62	Cytochrome f, small domain {Phormidium laminosum [	86.32
d2nn6h2	48	Ribosomal RNA-processing protein 4, RRP4 {Human (H	81.57

>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=9.2e-41  Score=249.60  Aligned_cols=84  Identities=32%  Similarity=0.444  Sum_probs=80.3

Q ss_pred             eecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeecc
Q psy7634          26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCN  105 (206)
Q Consensus        26 A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~  105 (206)
                      ||||++|||+| +|||+|||   ||||+++||+|.||+|||||  |||+||||+||+||+||||||++||+|+|++.   
T Consensus         1 A~KK~~GSt~N-grdS~~kr---lGvK~~~Gq~V~~G~IivRQ--RGtk~hpG~nVg~GkD~TLfA~~~G~V~F~k~---   71 (84)
T d2zjrt1           1 AHKKGVGSSKN-GRDSNPKY---LGVKKFGGEVVKAGNILVRQ--RGTKFKAGQGVGMGRDHTLFALSDGKVVFINK---   71 (84)
T ss_dssp             CCSSCSSCSSC-CCCCCCCC---CCCSSCTTCEECSSCEEECC--SSSSSEECTTEECCTTSCEEESSCEEEEEEEE---
T ss_pred             CCccccCCCCC-CCCCCCcc---ceEEECCCEEEeCCcEEEEe--cCceEcCCCCccccCCCcEEEeeceEEEEEEc---
Confidence            89999999999 99999999   99999999999999999999  99999999999999999999999999999986   


Q ss_pred             CCccchhhhhhccCCCCCCCCeeEEEeeecC
Q psy7634         106 LNWKHTWVIANYSGQEGLPIYKKHIHVLPEE  136 (206)
Q Consensus       106 p~~~~~w~~~~~~grkg~~~~Kk~VnViP~~  136 (206)
                                        ...|+||||+|.+
T Consensus        72 ------------------~~~rk~V~V~p~e   84 (84)
T d2zjrt1          72 ------------------GKGARFISIEAAQ   84 (84)
T ss_dssp             ------------------TTTEEEEEECCCC
T ss_pred             ------------------CCCCEEEEEEeCC
Confidence                              1268999999975

>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7e-41  Score=250.34  Aligned_cols=84  Identities=40%  Similarity=0.543  Sum_probs=78.3

Q ss_pred             eecccCCCcCCCCCCCCCCCccCcceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeecc
Q psy7634          26 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCN  105 (206)
Q Consensus        26 A~Kk~~gSt~N~grds~~kr~~~lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~  105 (206)
                      ||||++|||+| +|||+|||   ||||+++||+|.||+|||||  |||+||||+|||||+||||||+++|+|+|+...  
T Consensus         1 A~KK~~GSs~N-grdS~~kr---LGvK~~~Gq~V~~G~IivRQ--RGtk~hPG~nVg~GkD~TLfAl~~G~V~F~~~~--   72 (84)
T d2gycu1           1 AHKKAGGSTRN-GRDSEAKR---LGVKRFGGESVLAGSIIVRQ--RGTKFHAGANVGCGRDHTLFAKADGKVKFEVKG--   72 (84)
T ss_dssp             CCCCSCCSCCC-CCCCCCBC---CCCSSSCCCSSCCSBSSCCC--CCCSSCCCCCSSSCCCCCCCCCSCCCCSSSSSS--
T ss_pred             CCccccccCCC-CCCCCCcc---ceeEEcCCEEEcCCcEEEEe--ccceEcCCCCeeecCCCeEEEeccEEEEEEEcC--
Confidence            89999999999 99999999   99999999999999999999  999999999999999999999999999997531  


Q ss_pred             CCccchhhhhhccCCCCCCCCeeEEEeeec
Q psy7634         106 LNWKHTWVIANYSGQEGLPIYKKHIHVLPE  135 (206)
Q Consensus       106 p~~~~~w~~~~~~grkg~~~~Kk~VnViP~  135 (206)
                                        ...|+||||+||
T Consensus        73 ------------------~~~r~~V~V~~e   84 (84)
T d2gycu1          73 ------------------PKNRKFISIEAE   84 (84)
T ss_dssp             ------------------CSCCCCCCSSCC
T ss_pred             ------------------CCCCEEEEEEeC
Confidence                              235789999885

>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=5.5e-32  Score=194.11  Aligned_cols=65  Identities=35%  Similarity=0.555  Sum_probs=60.8

Q ss_pred             cceEeeCCeEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEEEeeccCCccchhhhhhccCCCCCCCCee
Q psy7634          49 KGFRKQEGEVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKITVEKCNLNWKHTWVIANYSGQEGLPIYKK  128 (206)
Q Consensus        49 lGiK~~~Gq~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~~~~~~p~~~~~w~~~~~~grkg~~~~Kk  128 (206)
                      ||||+++||+|.||+|||||  |||+||||+|||||+||||||+++|+|+|++..                     ..|+
T Consensus         2 LGvK~~~Gq~V~~G~IivRQ--RGtk~~pG~nVg~GkD~TLfAl~~G~V~F~~~~---------------------~~~~   58 (66)
T d1v8qa_           2 LGVKRYEGQVVRAGNILVRQ--RGTRFKPGKNVGMGRDFTLFALVDGVVEFQDRG---------------------RLGR   58 (66)
T ss_dssp             CEECSCTTCEECTTCEEEEC--SSCSSEECTTEEECTTCCEEESSSEEEEEEECG---------------------GGCE
T ss_pred             CccEEeCCEEEeCCeEEEEe--ccCeEeCCCCeeecCCCcEEEeeeeEEEEEEeC---------------------CCCe
Confidence            99999999999999999999  999999999999999999999999999998751                     2589


Q ss_pred             EEEeeecC
Q psy7634         129 HIHVLPEE  136 (206)
Q Consensus       129 ~VnViP~~  136 (206)
                      ||||+|..
T Consensus        59 ~VsV~P~a   66 (66)
T d1v8qa_          59 YVHVRPLA   66 (66)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEECC
Confidence            99999963

>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Escherichia coli [TaxId: 562]

Probab=99.85  E-value=1.7e-23  Score=155.74  Aligned_cols=49  Identities=41%  Similarity=0.579  Sum_probs=48.2

Q ss_pred             hhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         152 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       152 a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      ||||++|||+|+  |||+++||  |||+++||+|.||+||||||||+  ||||+|
T Consensus         1 A~KK~~GSs~Ng--rdS~~krL--GvK~~~Gq~V~~G~IivRQRGtk--~hPG~n   49 (84)
T d2gycu1           1 AHKKAGGSTRNG--RDSEAKRL--GVKRFGGESVLAGSIIVRQRGTK--FHAGAN   49 (84)
T ss_dssp             CCCCSCCSCCCC--CCCCCBCC--CCSSSCCCSSCCSBSSCCCCCCS--SCCCCC
T ss_pred             CCccccccCCCC--CCCCCccc--eeEEcCCEEEcCCcEEEEeccce--EcCCCC
Confidence            899999999998  89999999  99999999999999999999999  999998

>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.85  E-value=7.6e-23  Score=152.18  Aligned_cols=49  Identities=33%  Similarity=0.424  Sum_probs=48.2

Q ss_pred             hhcccCccccCCCCCCCCCcCCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         152 AAKKTGTSTRNKPIRKNSGFRFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       152 a~kk~~gst~N~~~r~s~~~rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      ||||++|||+|+  |||+++||  |||+++||+|.||+||||||||+  ||||+|
T Consensus         1 A~KK~~GSt~Ng--rdS~~krl--GvK~~~Gq~V~~G~IivRQRGtk--~hpG~n   49 (84)
T d2zjrt1           1 AHKKGVGSSKNG--RDSNPKYL--GVKKFGGEVVKAGNILVRQRGTK--FKAGQG   49 (84)
T ss_dssp             CCSSCSSCSSCC--CCCCCCCC--CCSSCTTCEECSSCEEECCSSSS--SEECTT
T ss_pred             CCccccCCCCCC--CCCCCccc--eEEECCCEEEeCCcEEEEecCce--EcCCCC
Confidence            899999999999  89999999  99999999999999999999999  999998

>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Thermus thermophilus [TaxId: 274]

Probab=99.40  E-value=2.5e-14  Score=101.70  Aligned_cols=31  Identities=42%  Similarity=0.744  Sum_probs=30.2

Q ss_pred             CCCCCeeeeCCeEEeeCcEEEEeecCcccccCCCC
Q psy7634         172 RFPKGFRKQEGEVVEKGSILYISYVQRLDYHPGLN  206 (206)
Q Consensus       172 rl~~G~k~~~g~~v~~G~Ii~rQrgt~~~~hpG~n  206 (206)
                      ||  |||+++||+|.||+||||||||+  ||||+|
T Consensus         1 RL--GvK~~~Gq~V~~G~IivRQRGtk--~~pG~n   31 (66)
T d1v8qa_           1 RL--GVKRYEGQVVRAGNILVRQRGTR--FKPGKN   31 (66)
T ss_dssp             CC--EECSCTTCEECTTCEEEECSSCS--SEECTT
T ss_pred             CC--ccEEeCCEEEeCCeEEEEeccCe--EeCCCC
Confidence            68  99999999999999999999999  999998

>d2ba0a2 b.84.4.2 (A:2-52) Exosome complex RNA-binding protein 1, ECR1 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: ECR1 N-terminal domain-like
domain: Exosome complex RNA-binding protein 1, ECR1
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.80  E-value=0.0095  Score=38.87  Aligned_cols=38  Identities=21%  Similarity=0.275  Sum_probs=32.0

Q ss_pred             eEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEE
Q psy7634          57 EVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKIT  100 (206)
Q Consensus        57 q~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~  100 (206)
                      +.|.||++|.-.     .|.||.++.. .|..|+|.+-|.|...
T Consensus         2 ~iV~PGe~i~~~-----~~~~G~Gty~-~~~~i~ss~~G~v~~~   39 (51)
T d2ba0a2           2 KIVLPGDLLSTN-----PRAAGYGTYV-EGGKVYAKIIGLFDQT   39 (51)
T ss_dssp             CEECTTCEEESC-----TTSBCTTEEE-ETTEEEECSSEEEEEC
T ss_pred             CEEcCCcEeecC-----CeeCCCCcEE-ECCEEEEEEEEEEEEE
Confidence            579999999643     4999999998 5689999999998754

>d2je6i2 b.84.4.2 (I:7-65) Exosome complex RNA-binding protein 1, ECR1 {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: ECR1 N-terminal domain-like
domain: Exosome complex RNA-binding protein 1, ECR1
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=92.52  E-value=0.08  Score=35.33  Aligned_cols=45  Identities=13%  Similarity=0.078  Sum_probs=33.1

Q ss_pred             eEeeCCeEEeeCcEEEEeecCCceeec-CCCeeecCCceEEEeeceEEEEE
Q psy7634          51 FRKQEGEVVEKGSILYISYVQRLDYHP-GLNVGFGARGTLFAMEKGKVKIT  100 (206)
Q Consensus        51 iK~~~Gq~V~~G~IivRQ~~Rgtk~hP-G~NVg~GkD~TLfAl~~G~V~f~  100 (206)
                      +...+-+.|.||++|...    ..|.| |..+.. .|..|||.+-|.|.+.
T Consensus         3 i~v~~r~iV~PGdvi~~~----~~~~~~g~~ty~-~~~ki~asv~G~v~~~   48 (59)
T d2je6i2           3 IVLQPRSIVVPGELLAEG----EFQIPWSPYILK-INSKYYSTVVGLFDVK   48 (59)
T ss_dssp             EECCSSCEECTTCEEEEE----CCCCCCCTTEEE-ETTEEEECSSEEEEEE
T ss_pred             eeEcCCeEECCCcEeeeC----CccccCCCEEEe-cCCEEEEEEEEEEEEE
Confidence            345677999999999876    44443 444432 3588999999999887

>d1ci3m2 b.84.2.2 (M:170-231) Cytochrome f, small domain {Phormidium laminosum [TaxId: 32059]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Rudiment single hybrid motif
family: Cytochrome f, small domain
domain: Cytochrome f, small domain
species: Phormidium laminosum [TaxId: 32059]

Probab=86.32  E-value=0.26  Score=32.24  Aligned_cols=15  Identities=40%  Similarity=0.532  Sum_probs=12.7

Q ss_pred             eeeeCCeEEeeCcEE
Q psy7634         177 FRKQEGEVVEKGSIL  191 (206)
Q Consensus       177 ~k~~~g~~v~~G~Ii  191 (206)
                      +...+|++|++|..|
T Consensus        44 l~V~eGd~V~aG~~L   58 (62)
T d1ci3m2          44 LIVSEGEEVAAGAAL   58 (62)
T ss_dssp             BCCCTTCEECTTCBS
T ss_pred             EEECCCCEEeCCCcc
Confidence            468899999999876

>d2nn6h2 b.84.4.2 (H:25-72) Ribosomal RNA-processing protein 4, RRP4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: ECR1 N-terminal domain-like
domain: Ribosomal RNA-processing protein 4, RRP4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.57  E-value=0.3  Score=31.49  Aligned_cols=39  Identities=21%  Similarity=0.290  Sum_probs=32.6

Q ss_pred             eEEeeCcEEEEeecCCceeecCCCeeecCCceEEEeeceEEEEE
Q psy7634          57 EVVEKGSILYISYVQRLDYHPGLNVGFGARGTLFAMEKGKVKIT  100 (206)
Q Consensus        57 q~V~~G~IivRQ~~Rgtk~hPG~NVg~GkD~TLfAl~~G~V~f~  100 (206)
                      +.|.||++|-.+    ..|.+|-+..+- |..|+|.+.|.|.-.
T Consensus         1 ~iv~PGe~It~~----~~~mrGHGTy~~-~~~i~aSv~G~verv   39 (48)
T d2nn6h2           1 HLVVPGDTITTD----TGFMRGHGTYMG-EEKLIASVAGSVERV   39 (48)
T ss_dssp             CBCCTTCBCCCC----TTCCBCTTEEEC-SSSEEECSSEEEEEE
T ss_pred             CEecCCcEeecC----CCeEcccccEec-CCEEEEEEeeeEEEe
Confidence            358899999877    558999999995 788999999999543