Psyllid ID: psy7649

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100
Protein Sequence
MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLVPTLLLGSIQPPSKRLAPNRLK
Secondary Structure (PSIPRED)
cEEEEEcccccHHHHHHHHHHcccEEEEcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccHHHHHHHHHHcHEEEEcHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccEcccccccEEccccccHccccccHcccccccc
Coil and Loop (DISEMBL)
mevyldggirygtDVFKAIGLGAKYVFVGRAALWGlahsgsngAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNlvptlllgsiqppskrlapnrlk
Flexible Loop (DISEMBL)
mevyldggiryGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLVPTLllgsiqppskrlapnrlk
Low Complexity Region (SEG)
MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFlelnnlvptlllGSIQPPSKRLAPNRLK
Disordered region (IsUnstruct)
**VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLVPTLLLGS**************
Disordered Region (DISOPRED)
MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLVPTL******************
Disordered Region (DISEMBL)
MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLVPTLLLGSIQPPSKRLAPNRLK
Disordered Region (DISPRO)
MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLVPTLLLGSIQPPS*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLVPTLLLGSIQPPSKRLAPNRLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	100	2.2.26 [Sep-21-2011]
Q3ZBW2	353	Hydroxyacid oxidase 2 OS=	yes	N/A	0.51	0.144	0.647	3e-12
Q9WU19	370	Hydroxyacid oxidase 1 OS=	yes	N/A	0.51	0.137	0.607	2e-11
Q07523	353	Hydroxyacid oxidase 2 OS=	yes	N/A	0.55	0.155	0.527	3e-11
Q9NYQ3	351	Hydroxyacid oxidase 2 OS=	yes	N/A	0.54	0.153	0.555	3e-11
Q9UJM8	370	Hydroxyacid oxidase 1 OS=	no	N/A	0.51	0.137	0.607	5e-11
Q9NYQ2	353	Hydroxyacid oxidase 2 OS=	no	N/A	0.51	0.144	0.529	4e-10
O49506	368	Peroxisomal (S)-2-hydroxy	yes	N/A	0.51	0.138	0.568	2e-09
Q7FAS1	367	Peroxisomal (S)-2-hydroxy	yes	N/A	0.51	0.138	0.568	2e-09
B8AUI3	367	Peroxisomal (S)-2-hydroxy	N/A	N/A	0.51	0.138	0.568	2e-09
P95040	396	Putative mycofactocin sys	yes	N/A	0.91	0.229	0.419	3e-09

>sp|Q3ZBW2|HAOX2_BOVIN Hydroxyacid oxidase 2 OS=Bos taurus GN=HAO2 PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 33/51 (64%), Positives = 37/51 (72%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EVYLDGGIR G DV KA+ LGAK VFVGR  LWGLA+ G +G   VL  L
Sbjct: 274 VEVYLDGGIRTGNDVLKALALGAKCVFVGRPILWGLAYKGEHGVKEVLDIL 324

Bos taurus (taxid: 9913)
EC: 1EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 5

>sp|Q9WU19|HAOX1_MOUSE Hydroxyacid oxidase 1 OS=Mus musculus GN=Hao1 PE=2 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 37/51 (72%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EV+LDGG+R GTDV KA+ LGAK VFVGR  +WGLA  G  G   VL+ L
Sbjct: 286 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWGLAFQGEKGVQDVLEIL 336

Has 2-hydroxyacid oxidase activity. Most active on the 2-carbon substrate glycolate, but is also active on 2-hydroxy fatty acids, with high activity towards 2-hydroxy palmitate and 2-hydroxy octanoate.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q07523|HAOX2_RAT Hydroxyacid oxidase 2 OS=Rattus norvegicus GN=Hao2 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EVY+DGG+R GTDV KA+ LGA+ +F+GR  LWGLA  G +G   VL  L  ++
Sbjct: 274 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAEL 328

Catalyzes the oxidation of L-alpha-hydroxy acids as well as, more slowly, that of L-alpha-amino acids.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q9NYQ3|HAOX2_HUMAN Hydroxyacid oxidase 2 OS=Homo sapiens GN=HAO2 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 30/54 (55%), Positives = 38/54 (70%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHK 54
           +EVYLDGG+R G DV KA+ LGAK +F+GR  LWGLA  G +G   VL  L ++
Sbjct: 272 IEVYLDGGVRTGNDVLKALALGAKCIFLGRPILWGLACKGEHGVKEVLNILTNE 325

Catalyzes the oxidation of L-alpha-hydroxy acids as well as, more slowly, that of L-alpha-amino acids.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q9UJM8|HAOX1_HUMAN Hydroxyacid oxidase 1 OS=Homo sapiens GN=HAO1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 37/51 (72%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EV+LDGG+R GTDV KA+ LGAK VFVGR  +WGLA  G  G   VL+ L
Sbjct: 286 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEIL 336

Has 2-hydroxyacid oxidase activity. Most active on the 2-carbon substrate glycolate, but is also active on 2-hydroxy fatty acids, with high activity towards 2-hydroxy palmitate and 2-hydroxy octanoate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q9NYQ2|HAOX2_MOUSE Hydroxyacid oxidase 2 OS=Mus musculus GN=Hao2 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EVY+DGG+R G DV KA+ LGA+ +F+GR  +WGLA  G +G   VL  L
Sbjct: 274 IEVYMDGGVRTGNDVLKALALGARCIFLGRPIIWGLACKGEDGVKEVLDIL 324

Has 2-hydroxyacid oxidase activity. Most active on medium-chain substrates.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|O49506|GLO5_ARATH Peroxisomal (S)-2-hydroxy-acid oxidase GLO5 OS=Arabidopsis thaliana GN=GLO5 PE=1 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           + V+LDGG+R GTDVFKA+ LGA  VFVGR +L+ LA  G  G  ++LQ L
Sbjct: 280 IPVFLDGGVRRGTDVFKALALGASGVFVGRPSLFSLAADGEAGVRKMLQML 330

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|Q7FAS1|GLO3_ORYSJ Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. japonica GN=GLO3 PE=2 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           + V+LDGG+R GTDVFKA+ LGA  VF+GR  L+ LA  G  G  +VLQ L
Sbjct: 281 LPVFLDGGVRRGTDVFKALALGASGVFIGRPVLFSLAVDGEAGVRKVLQML 331

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|B8AUI3|GLO3_ORYSI Peroxisomal (S)-2-hydroxy-acid oxidase GLO3 OS=Oryza sativa subsp. indica GN=GLO3 PE=3 SV=1

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 29/51 (56%), Positives = 36/51 (70%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           + V+LDGG+R GTDVFKA+ LGA  VF+GR  L+ LA  G  G  +VLQ L
Sbjct: 281 LPVFLDGGVRRGTDVFKALALGASGVFIGRPVLFSLAVDGEAGVRKVLQML 331

Photorespiratory enzyme that can exert a strong regulation over photosynthesis, possibly through a feed-back inhibition on Rubisco activase. Not required for oxalate accumulation.

Oryza sativa subsp. indica (taxid: 39946)

EC: 1

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 5

>sp|P95040|MFTD_MYCTU Putative mycofactocin system heme/flavin oxidoreductase MftD OS=Mycobacterium tuberculosis GN=mftD PE=3 SV=2

 Score = 60.8 bits (146), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/93 (41%), Positives = 53/93 (56%), Gaps = 2/93 (2%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAV 60
           +EV LDGGIR G+DV KA+ LGA+ V +GRA LWGLA +G  G   VL  L   I  ++ 
Sbjct: 304 VEVLLDGGIRRGSDVVKAVALGARAVMIGRAYLWGLAANGQAGVENVLDILRGGI--DSA 361

Query: 61  ADKVHNAYSIFFLELNNLVPTLLLGSIQPPSKR 93
              + +A        + LVPT  +  +  PS+R
Sbjct: 362 LMGLGHASVHDLSPADILVPTGFIRDLGVPSRR 394

May play a role in the maturation of mycofactocin, a conserved polypeptide that might serve as an electron carrier. The genes for mycofactocin and other proteins proposed to function in its maturation are found in a conserved gene cluster.

Mycobacterium tuberculosis (taxid: 1773)

EC: 1

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
260791285	1115	hypothetical protein BRAFLDRAFT_125550 [	0.59	0.052	0.616	4e-13
449682416	369	PREDICTED: hydroxyacid oxidase 1-like [H	0.51	0.138	0.666	2e-12
390335593	375	PREDICTED: hydroxyacid oxidase 1-like [S	0.55	0.146	0.6	2e-12
260824425	374	hypothetical protein BRAFLDRAFT_57337 [B	0.54	0.144	0.629	2e-12
291224809	443	PREDICTED: hydroxyacid oxidase 1-like [S	0.49	0.110	0.693	3e-12
299115220	394	Glycolate Oxidase [Ectocarpus siliculosu	0.5	0.126	0.68	4e-12
260786697	302	hypothetical protein BRAFLDRAFT_199062 [	0.54	0.178	0.629	8e-12
6453563	239	glycolate oxidase [Laminaria digitata]	0.56	0.234	0.625	1e-11
340383151	368	PREDICTED: hydroxyacid oxidase 1-like [A	0.7	0.190	0.528	1e-11
325192617	379	peroxisomal (S)2hydroxyacid oxidase puta	0.55	0.145	0.563	1e-11

>gi|260791285|ref|XP_002590670.1| hypothetical protein BRAFLDRAFT_125550 [Branchiostoma floridae] gi|229275866|gb|EEN46681.1| hypothetical protein BRAFLDRAFT_125550 [Branchiostoma floridae]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 37/60 (61%), Positives = 47/60 (78%), Gaps = 1/60 (1%)

Query: 2   EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVA 61
           EVYLDGG+R GTDV KA+ LGA+ VF+GR ALWGLAH+G+ G  +VLQ L  + L +A+A
Sbjct: 280 EVYLDGGVRTGTDVLKALALGARCVFIGRPALWGLAHNGAEGVQQVLQILTEE-LSQAMA 338

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|449682416|ref|XP_002166250.2| PREDICTED: hydroxyacid oxidase 1-like [Hydra magnipapillata]

 Score = 76.6 bits (187), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/51 (66%), Positives = 42/51 (82%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           ++VYLDGGIR GTD+FKA+ LGAK VF+GR ALWGLA++G +G   VLQ L
Sbjct: 283 IDVYLDGGIRKGTDIFKALALGAKAVFIGRPALWGLAYNGEDGVKTVLQIL 333

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|390335593|ref|XP_791249.3| PREDICTED: hydroxyacid oxidase 1-like [Strongylocentrotus purpuratus]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 33/55 (60%), Positives = 45/55 (81%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EVY+DGG+R GTDVFKA+ +GA+ VF+GR ALWGLA +G  GAA+VL+ L  ++
Sbjct: 290 VEVYMDGGVRRGTDVFKALAMGARAVFIGRPALWGLACNGEEGAAQVLEILRQEL 344

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|260824425|ref|XP_002607168.1| hypothetical protein BRAFLDRAFT_57337 [Branchiostoma floridae] gi|229292514|gb|EEN63178.1| hypothetical protein BRAFLDRAFT_57337 [Branchiostoma floridae]

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query: 2   EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           EVYLDGG+R GTDV KA+ LGA+ VF+GR ALWGLAH+G  G  +VLQ L  ++
Sbjct: 282 EVYLDGGVRTGTDVLKALALGARCVFIGRPALWGLAHNGEEGVQQVLQILTDEL 335

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291224809|ref|XP_002732395.1| PREDICTED: hydroxyacid oxidase 1-like [Saccoglossus kowalevskii]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 34/49 (69%), Positives = 40/49 (81%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQ 49
           +EVYLDGG+R GTDV KAI LGAK VF+GR ALWGLA++G  G  +VLQ
Sbjct: 286 VEVYLDGGVRTGTDVLKAIALGAKCVFLGRPALWGLAYNGKEGVQQVLQ 334

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|299115220|emb|CBN74053.1| Glycolate Oxidase [Ectocarpus siliculosus]

 Score = 75.5 bits (184), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 34/50 (68%), Positives = 40/50 (80%)

Query: 2   EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           E+YLDGGI  GTDVFKA+ LGAK VF+GR  LWGLAHSG  G ++VL+ L
Sbjct: 311 EIYLDGGICRGTDVFKALALGAKAVFIGRPVLWGLAHSGEEGVSKVLKLL 360

Source: Ectocarpus siliculosus

Species: Ectocarpus siliculosus

Genus: Ectocarpus

Family: Ectocarpaceae

Order: Ectocarpales

Phylum: Phaeophyceae

Superkingdom: Eukaryota

>gi|260786697|ref|XP_002588393.1| hypothetical protein BRAFLDRAFT_199062 [Branchiostoma floridae] gi|229273555|gb|EEN44404.1| hypothetical protein BRAFLDRAFT_199062 [Branchiostoma floridae]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/54 (62%), Positives = 42/54 (77%)

Query: 2   EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           EVYLDGG+R GTDV KA+ LGA+ VF+GR ALWGLA +G+ G   VLQ L H++
Sbjct: 240 EVYLDGGVRTGTDVLKALALGARCVFIGRPALWGLALNGAEGVEEVLQVLKHEL 293

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|6453563|emb|CAB61335.1| glycolate oxidase [Laminaria digitata]

 Score = 73.9 bits (180), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 35/56 (62%), Positives = 42/56 (75%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL 56
            EVYLDGGI  GTDVFKAI LGAK VF+GR  LWGL HSG  G ++VL+ L  +++
Sbjct: 155 CEVYLDGGICRGTDVFKAIALGAKAVFIGRPVLWGLGHSGEEGVSKVLKLLNDELI 210

Source: Laminaria digitata

Species: Laminaria digitata

Genus: Laminaria

Family: Laminariaceae

Order: Laminariales

Phylum: Phaeophyceae

Superkingdom: Eukaryota

>gi|340383151|ref|XP_003390081.1| PREDICTED: hydroxyacid oxidase 1-like [Amphimedon queenslandica]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 37/70 (52%), Positives = 44/70 (62%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAV 60
           +EVYLDGGIR+GTDVFKA+ LGA+ VF+GR  LWGLA +G  G   VL  L  +     V
Sbjct: 286 IEVYLDGGIRHGTDVFKALALGARCVFIGRPVLWGLAVNGEEGVCEVLSILREEFRQAMV 345

Query: 61  ADKVHNAYSI 70
                N  SI
Sbjct: 346 LSGTPNISSI 355

Source: Amphimedon queenslandica

Species: Amphimedon queenslandica

Genus: Amphimedon

Family: Niphatidae

Order: Haplosclerida

Class: Demospongiae

Phylum: Porifera

Superkingdom: Eukaryota

>gi|325192617|emb|CCA27043.1| peroxisomal (S)2hydroxyacid oxidase putative [Albugo laibachii Nc14]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 31/55 (56%), Positives = 42/55 (76%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EVY+DGG R GTD+FKA+ LGA+ VF+GR  LWGL+H G  GA +VL+ L  ++
Sbjct: 293 VEVYVDGGFRRGTDIFKALALGARAVFLGRPILWGLSHDGETGAYKVLRMLTDEL 347

Source: Albugo laibachii Nc14

Species: Albugo laibachii

Genus: Albugo

Family: Albuginaceae

Order: Albuginales

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	100
UNIPROTKB|E1BRR7	369	HAO1 "Uncharacterized protein"	0.51	0.138	0.607	4.9e-12
UNIPROTKB|E1C0E1	373	HAO2 "Uncharacterized protein"	0.51	0.136	0.647	5.1e-12
UNIPROTKB|Q3ZBW2	353	HAO2 "Hydroxyacid oxidase 2" [	0.51	0.144	0.647	7.2e-12
ZFIN|ZDB-GENE-040426-1239	378	hao2 "hydroxyacid oxidase 2 (l	0.52	0.137	0.566	1.1e-11
UNIPROTKB|F1PEF7	389	HAO2 "Uncharacterized protein"	0.48	0.123	0.666	2.5e-11
UNIPROTKB|F1SAZ7	353	LOC100522133 "Uncharacterized	0.51	0.144	0.647	2.6e-11
UNIPROTKB|F6XM23	370	HAO1 "Uncharacterized protein"	0.51	0.137	0.588	3.8e-11
UNIPROTKB|I3LVF1	370	HAO1 "Uncharacterized protein"	0.51	0.137	0.607	3.8e-11
MGI|MGI:96011	370	Hao1 "hydroxyacid oxidase 1, l	0.51	0.137	0.607	3.8e-11
UNIPROTKB|E1BC79	371	HAO1 "Uncharacterized protein"	0.51	0.137	0.607	3.8e-11

UNIPROTKB|E1BRR7 HAO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 4.9e-12, P = 4.9e-12
 Identities = 31/51 (60%), Positives = 38/51 (74%)

Query:     1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
             +EV+LDGGIR GTD+ KA+ LGAK VF+GR  +WGL + G  GA  VLQ L
Sbjct:   285 VEVFLDGGIRKGTDILKALALGAKAVFIGRPLIWGLVYQGEEGAKEVLQML 335

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

UNIPROTKB|E1C0E1 HAO2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 168 (64.2 bits), Expect = 5.1e-12, P = 5.1e-12
 Identities = 33/51 (64%), Positives = 39/51 (76%)

Query:     1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
             +EVYLDGGIR G+DV KA+ LGAK VF+GR ALWGLA+ G  G   VL+ L
Sbjct:   294 VEVYLDGGIRKGSDVLKALALGAKCVFIGRPALWGLAYKGEEGLQDVLRIL 344

GO:0010181 "FMN binding" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0019395 "fatty acid oxidation" evidence=IEA

GO:0052853 "long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity" evidence=IEA

UNIPROTKB|Q3ZBW2 HAO2 "Hydroxyacid oxidase 2" [Bos taurus (taxid:9913)]

 Score = 166 (63.5 bits), Expect = 7.2e-12, P = 7.2e-12
 Identities = 33/51 (64%), Positives = 37/51 (72%)

Query:     1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
             +EVYLDGGIR G DV KA+ LGAK VFVGR  LWGLA+ G +G   VL  L
Sbjct:   274 VEVYLDGGIRTGNDVLKALALGAKCVFVGRPILWGLAYKGEHGVKEVLDIL 324

GO:0010181 "FMN binding" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0019395 "fatty acid oxidation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0052854 "medium-chain-(S)-2-hydroxy-acid oxidase activity" evidence=IEA

GO:0052853 "long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity" evidence=IEA

GO:0052852 "very-long-chain-(S)-2-hydroxy-acid oxidase activity" evidence=IEA

ZFIN|ZDB-GENE-040426-1239 hao2 "hydroxyacid oxidase 2 (long chain)" [Danio rerio (taxid:7955)]

 Score = 165 (63.1 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 30/53 (56%), Positives = 41/53 (77%)

Query:     1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH 53
             +EVY+DGGIR G DV KAI LGA+ VF+GR A+WGLA+ G +G   +L +++H
Sbjct:   299 VEVYMDGGIRTGNDVLKAIALGARCVFIGRPAIWGLAYKGEDGVKEIL-NILH 350

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

UNIPROTKB|F1PEF7 HAO2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 162 (62.1 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 32/48 (66%), Positives = 35/48 (72%)

Query:     1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL 48
             MEVYLDGGIR G DV KA+ LGAK VF+GR  LWGLA+ G  G   VL
Sbjct:   310 MEVYLDGGIRTGNDVLKALALGAKCVFLGRPILWGLAYKGEYGVEEVL 357

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

UNIPROTKB|F1SAZ7 LOC100522133 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 161 (61.7 bits), Expect = 2.6e-11, P = 2.6e-11
 Identities = 33/51 (64%), Positives = 36/51 (70%)

Query:     1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
             +EVYLDGGIR G DV KA+ LGAK VFVGR  LWGLA  G +G   VL  L
Sbjct:   274 IEVYLDGGIRTGNDVLKALALGAKCVFVGRPILWGLACKGEHGVEEVLNIL 324

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

UNIPROTKB|F6XM23 HAO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 160 (61.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 30/51 (58%), Positives = 37/51 (72%)

Query:     1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
             +E++LDGG+R GTDV KA+ LGAK VFVGR  +WGLA  G  G   VL+ L
Sbjct:   286 VEIFLDGGVRKGTDVLKALALGAKAVFVGRPVIWGLASQGEKGVQDVLEIL 336

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0010181 "FMN binding" evidence=IEA

UNIPROTKB|I3LVF1 HAO1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 160 (61.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 31/51 (60%), Positives = 37/51 (72%)

Query:     1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
             +EV+LDGG+R GTDV KA+ LGAK VFVGR  +WGLA  G  G   VL+ L
Sbjct:   286 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWGLASQGEKGVQDVLEIL 336

GO:0010181 "FMN binding" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

MGI|MGI:96011 Hao1 "hydroxyacid oxidase 1, liver" [Mus musculus (taxid:10090)]

 Score = 160 (61.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 31/51 (60%), Positives = 37/51 (72%)

Query:     1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
             +EV+LDGG+R GTDV KA+ LGAK VFVGR  +WGLA  G  G   VL+ L
Sbjct:   286 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWGLAFQGEKGVQDVLEIL 336

GO:0001561 "fatty acid alpha-oxidation" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0003973 "(S)-2-hydroxy-acid oxidase activity" evidence=ISO;IDA

GO:0005102 "receptor binding" evidence=ISO

GO:0005777 "peroxisome" evidence=ISO;IDA

GO:0008891 "glycolate oxidase activity" evidence=ISO

GO:0010181 "FMN binding" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0046296 "glycolate catabolic process" evidence=ISO

GO:0052852 "very-long-chain-(S)-2-hydroxy-acid oxidase activity" evidence=IEA

GO:0052853 "long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity" evidence=IEA

GO:0052854 "medium-chain-(S)-2-hydroxy-acid oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IDA

UNIPROTKB|E1BC79 HAO1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 160 (61.4 bits), Expect = 3.8e-11, P = 3.8e-11
 Identities = 31/51 (60%), Positives = 37/51 (72%)

Query:     1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
             +EV+LDGG+R GTDV KA+ LGAK VFVGR  +WGLA  G  G   VL+ L
Sbjct:   287 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIIWGLASQGEKGVQDVLEIL 337

GO:0010181 "FMN binding" evidence=IEA

GO:0008891 "glycolate oxidase activity" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0001561 "fatty acid alpha-oxidation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54E41	HAOX_DICDI	1, ., 1, ., 3, ., 1, 5	0.5319	0.47	0.1211	yes	N/A
Q9NYQ3	HAOX2_HUMAN	1, ., 1, ., 3, ., 1, 5	0.5555	0.54	0.1538	yes	N/A
Q07523	HAOX2_RAT	1, ., 1, ., 3, ., 1, 5	0.5272	0.55	0.1558	yes	N/A
O49506	GLO5_ARATH	1, ., 1, ., 3, ., 1, 5	0.5686	0.51	0.1385	yes	N/A
Q7FAS1	GLO3_ORYSJ	1, ., 1, ., 3, ., 1, 5	0.5686	0.51	0.1389	yes	N/A
Q3ZBW2	HAOX2_BOVIN	1, ., 1, ., 3, ., 1, 5	0.6470	0.51	0.1444	yes	N/A
Q9WU19	HAOX1_MOUSE	1, ., 1, ., 3, ., 1, 5	0.6078	0.51	0.1378	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	100
cd02809	299	cd02809, alpha_hydroxyacid_oxid_FMN, Family of hom	8e-22
pfam01070	302	pfam01070, FMN_dh, FMN-dependent dehydrogenase	1e-21
cd02922	344	cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-b	2e-17
TIGR03966	385	TIGR03966, actino_HemFlav, heme/flavin dehydrogena	1e-14
COG1304	360	COG1304, idi, Isopentenyl diphosphate isomerase (B	8e-14
PLN02535	364	PLN02535, PLN02535, glycolate oxidase	2e-13
cd03332	383	cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO)	1e-12
PLN02979	366	PLN02979, PLN02979, glycolate oxidase	4e-12
cd04736	361	cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-li	5e-12
PLN02493	367	PLN02493, PLN02493, probable peroxisomal (S)-2-hyd	6e-12
cd04737	351	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN	2e-11
PRK11197	381	PRK11197, lldD, L-lactate dehydrogenase; Provision	2e-07
TIGR02708	367	TIGR02708, L_lactate_ox, L-lactate oxidase	2e-07
PRK05437	352	PRK05437, PRK05437, isopentenyl pyrophosphate isom	7e-06
COG0069	485	COG0069, GltB, Glutamate synthase domain 2 [Amino	3e-05
cd02808	392	cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-b	9e-05
pfam01645	367	pfam01645, Glu_synthase, Conserved region in gluta	2e-04
TIGR02151	333	TIGR02151, IPP_isom_2, isopentenyl-diphosphate del	8e-04
pfam00478	467	pfam00478, IMPDH, IMP dehydrogenase / GMP reductas	0.001

>gnl|CDD|239203 cd02809, alpha_hydroxyacid_oxid_FMN, Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

 Score = 86.0 bits (214), Expect = 8e-22
 Identities = 30/51 (58%), Positives = 35/51 (68%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EV LDGGIR GTDV KA+ LGA  V +GR  L+GLA  G  G A VL+ L
Sbjct: 228 IEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEIL 278

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. Length = 299

>gnl|CDD|216281 pfam01070, FMN_dh, FMN-dependent dehydrogenase

 Score = 85.6 bits (213), Expect = 1e-21
 Identities = 27/51 (52%), Positives = 33/51 (64%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           + V +DGGIR GTDV KA+ LGA  V +GR  L+GLA  G  G A  L+ L
Sbjct: 226 IPVLVDGGIRRGTDVLKALALGADAVLLGRPFLYGLAAGGEAGVAHALEIL 276

Length = 302

>gnl|CDD|239238 cd02922, FCB2_FMN, Flavocytochrome b2 (FCB2) FMN-binding domain

 Score = 74.9 bits (185), Expect = 2e-17
 Identities = 27/55 (49%), Positives = 37/55 (67%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EVY+DGG+R GTDV KA+ LGAK V +GR  L+ L+  G  G  + +Q L  +I
Sbjct: 272 IEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQILKDEI 326

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. Length = 344

>gnl|CDD|188481 TIGR03966, actino_HemFlav, heme/flavin dehydrogenase, mycofactocin system

 Score = 67.5 bits (165), Expect = 1e-14
 Identities = 30/51 (58%), Positives = 36/51 (70%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EV LDGGIR G+DV KA+ LGA+ V +GRA LWGLA +G  G   VL  L
Sbjct: 303 VEVLLDGGIRRGSDVVKALALGARAVMIGRAYLWGLAANGEAGVENVLDIL 353

Members of this protein family possess an N-terminal heme-binding domain and C-terminal flavodehydrogenase domain, and share homology to yeast flavocytochrome b2, to E. coli L-lactate dehydrogenase [cytochrome], to (S)-mandelate dehydrogenase, etc. This enzyme appears only in the context of the mycofactocin system. Interestingly, it is absent from the four species detected so far with mycofactocin but without an F420 biosynthesis system. Length = 385

>gnl|CDD|224223 COG1304, idi, Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

 Score = 65.0 bits (159), Expect = 8e-14
 Identities = 27/50 (54%), Positives = 32/50 (64%)

Query: 2   EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           EV  DGGIR G DV KA+ LGA  V +GR  L+GLA  G  G  RVL+ +
Sbjct: 275 EVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVERVLEII 324

Length = 360

>gnl|CDD|215294 PLN02535, PLN02535, glycolate oxidase

 Score = 64.1 bits (156), Expect = 2e-13
 Identities = 27/49 (55%), Positives = 36/49 (73%)

Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           V LDGG+R GTDVFKA+ LGA+ V VGR  ++GLA  G +G  +V++ L
Sbjct: 281 VLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGEDGVRKVIEML 329

Length = 364

>gnl|CDD|239448 cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain

 Score = 61.5 bits (150), Expect = 1e-12
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLV 52
           V  D G+R G D+ KA+ LGAK V +GR   +GLA  G +G   VL++L+
Sbjct: 311 VLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLL 360

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. Length = 383

>gnl|CDD|166620 PLN02979, PLN02979, glycolate oxidase

 Score = 60.1 bits (145), Expect = 4e-12
 Identities = 27/49 (55%), Positives = 35/49 (71%)

Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           V+LDGG+R GTDVFKA+ LGA  +F+GR  ++ LA  G  G  +VLQ L
Sbjct: 281 VFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQML 329

Length = 366

>gnl|CDD|240087 cd04736, MDH_FMN, Mandelate dehydrogenase (MDH)-like FMN-binding domain

 Score = 59.8 bits (145), Expect = 5e-12
 Identities = 26/55 (47%), Positives = 35/55 (63%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
             V +D GIR G+D+ KA+ LGA  V +GRA L+GLA  G  G + VL+ L  +I
Sbjct: 290 KPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEI 344

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 361

>gnl|CDD|166134 PLN02493, PLN02493, probable peroxisomal (S)-2-hydroxy-acid oxidase

 Score = 59.7 bits (144), Expect = 6e-12
 Identities = 27/49 (55%), Positives = 35/49 (71%)

Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           V+LDGG+R GTDVFKA+ LGA  +F+GR  ++ LA  G  G  +VLQ L
Sbjct: 282 VFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQML 330

Length = 367

>gnl|CDD|240088 cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain

 Score = 58.2 bits (141), Expect = 2e-11
 Identities = 24/49 (48%), Positives = 30/49 (61%)

Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +  D G+R G  VFKA+  GA  V VGR  L+GLA  G+ G A VL+ L
Sbjct: 279 IIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASVLEHL 327

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). Length = 351

>gnl|CDD|183033 PRK11197, lldD, L-lactate dehydrogenase; Provisional

 Score = 46.9 bits (112), Expect = 2e-07
 Identities = 21/48 (43%), Positives = 29/48 (60%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL 48
           + +  D GIR G DV + I LGA  V +GRA ++ LA +G  G A +L
Sbjct: 301 ITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLL 348

Length = 381

>gnl|CDD|131755 TIGR02708, L_lactate_ox, L-lactate oxidase

 Score = 46.8 bits (111), Expect = 2e-07
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +  D G+R G  VFKA+  GA  V +GR  ++GLA  GS GA +V + L
Sbjct: 286 IVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYL 334

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence [Energy metabolism, Other]. Length = 367

>gnl|CDD|235465 PRK05437, PRK05437, isopentenyl pyrophosphate isomerase; Provisional

 Score = 42.1 bits (100), Expect = 7e-06
 Identities = 14/47 (29%), Positives = 21/47 (44%)

Query: 7   GGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH 53
           GGIR G D+ KA+ LGA  V +    L      G      +++  + 
Sbjct: 268 GGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIE 314

Length = 352

>gnl|CDD|223147 COG0069, GltB, Glutamate synthase domain 2 [Amino acid transport and metabolism]

 Score = 40.7 bits (96), Expect = 3e-05
 Identities = 17/28 (60%), Positives = 18/28 (64%)

Query: 6   DGGIRYGTDVFKAIGLGAKYVFVGRAAL 33
           DGG+R G DV KA  LGA  V  G AAL
Sbjct: 380 DGGLRTGADVAKAAALGADAVGFGTAAL 407

Length = 485

>gnl|CDD|239202 cd02808, GltS_FMN, Glutamate synthase (GltS) FMN-binding domain

 Score = 39.1 bits (92), Expect = 9e-05
 Identities = 16/28 (57%), Positives = 19/28 (67%)

Query: 6   DGGIRYGTDVFKAIGLGAKYVFVGRAAL 33
            GG+R G DV KA+ LGA  V +G AAL
Sbjct: 291 SGGLRTGADVAKALALGADAVGIGTAAL 318

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. Length = 392

>gnl|CDD|110632 pfam01645, Glu_synthase, Conserved region in glutamate synthase

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 17/28 (60%), Positives = 20/28 (71%)

Query: 6   DGGIRYGTDVFKAIGLGAKYVFVGRAAL 33
           DGG+R G DV KA  LGA  V++G AAL
Sbjct: 279 DGGLRTGADVAKAAALGADAVYIGTAAL 306

This family represents a region of the glutamate synthase protein. This region is expressed as a separate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster. Length = 367

>gnl|CDD|233750 TIGR02151, IPP_isom_2, isopentenyl-diphosphate delta-isomerase, type 2

 Score = 36.5 bits (85), Expect = 8e-04
 Identities = 16/47 (34%), Positives = 22/47 (46%)

Query: 7   GGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH 53
           GG+R G DV KAI LGA  V + R  L      G       ++ ++ 
Sbjct: 261 GGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIE 307

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 333

>gnl|CDD|215936 pfam00478, IMPDH, IMP dehydrogenase / GMP reductase domain

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 13/25 (52%), Positives = 16/25 (64%)

Query: 6   DGGIRYGTDVFKAIGLGAKYVFVGR 30
           DGGIRY  D+ KA+  GA  V +G 
Sbjct: 332 DGGIRYSGDIAKALAAGASAVMLGS 356

This family is involved in biosynthesis of guanosine nucleotide. Members of this family contain a TIM barrel structure. In the inosine monophosphate dehydrogenases 2 CBS domains pfam00571 are inserted in the TIM barrel. This family is a member of the common phosphate binding site TIM barrel family. Length = 467

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	100
COG1304	360	idi Isopentenyl diphosphate isomerase (BS_ypgA, MT	99.86
KOG0538|consensus	363		99.82
PF01070	356	FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR	99.82
PLN02493	367	probable peroxisomal (S)-2-hydroxy-acid oxidase	99.81
PRK11197	381	lldD L-lactate dehydrogenase; Provisional	99.81
PLN02979	366	glycolate oxidase	99.81
TIGR02708	367	L_lactate_ox L-lactate oxidase. Members of this pr	99.8
cd04736	361	MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin	99.8
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	99.79
cd02922	344	FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom	99.77
PLN02535	364	glycolate oxidase	99.76
PRK05437	352	isopentenyl pyrophosphate isomerase; Provisional	99.75
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	99.75
cd02811	326	IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di	99.7
cd02809	299	alpha_hydroxyacid_oxid_FMN Family of homologous FM	99.69
TIGR02151	333	IPP_isom_2 isopentenyl-diphosphate delta-isomerase	99.67
cd02808	392	GltS_FMN Glutamate synthase (GltS) FMN-binding dom	99.66
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	99.64
COG0069	485	GltB Glutamate synthase domain 2 [Amino acid trans	99.6
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	99.43
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	99.33
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	99.26
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	99.16
TIGR01306	321	GMP_reduct_2 guanosine monophosphate reductase, ba	99.08
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	99.06
TIGR01305	343	GMP_reduct_1 guanosine monophosphate reductase, eu	99.01
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.98
PF00478	352	IMPDH: IMP dehydrogenase / GMP reductase domain; I	98.98
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.95
PRK05096	346	guanosine 5'-monophosphate oxidoreductase; Provisi	98.95
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	98.94
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.91
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	98.89
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	98.86
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.78
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.7
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.63
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	98.61
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	98.48
PLN02826	409	dihydroorotate dehydrogenase	98.46
COG2070	336	Dioxygenases related to 2-nitropropane dioxygenase	98.44
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	98.38
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	98.37
PRK02506	310	dihydroorotate dehydrogenase 1A; Reviewed	98.35
PF03060	330	NMO: Nitronate monooxygenase; InterPro: IPR004136	98.31
KOG0399|consensus	2142		98.26
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	98.25
KOG2550|consensus	503		98.08
cd04742	418	NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom	98.07
TIGR02814	444	pfaD_fam PfaD family protein. The protein PfaD is	98.05
PRK05286	344	dihydroorotate dehydrogenase 2; Reviewed	97.93
PF01180	295	DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP	97.91
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	97.9
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	97.84
PRK08318	420	dihydropyrimidine dehydrogenase subunit B; Validat	97.8
cd04738	327	DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl	97.79
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	97.79
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	97.78
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	97.75
cd04741	294	DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c	97.72
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	97.66
PRK00208	250	thiG thiazole synthase; Reviewed	97.62
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	97.61
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	97.61
TIGR01036	335	pyrD_sub2 dihydroorotate dehydrogenase, subfamily	97.58
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	97.55
COG0167	310	PyrD Dihydroorotate dehydrogenase [Nucleotide tran	97.5
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	97.39
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	97.36
cd04743	320	NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma	97.32
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	97.31
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.3
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	97.28
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	97.27
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	97.27
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	97.22
PRK14024	241	phosphoribosyl isomerase A; Provisional	97.2
TIGR00737	319	nifR3_yhdG putative TIM-barrel protein, nifR3 fami	97.14
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	97.13
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	97.13
CHL00162	267	thiG thiamin biosynthesis protein G; Validated	97.1
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	97.09
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.08
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	97.08
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	97.08
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	97.05
PRK11840	326	bifunctional sulfur carrier protein/thiazole synth	97.04
PRK14024	241	phosphoribosyl isomerase A; Provisional	97.02
cd02911	233	arch_FMN Archeal FMN-binding domain. This family o	97.0
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	97.0
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.99
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	96.98
PRK11815	333	tRNA-dihydrouridine synthase A; Provisional	96.97
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	96.97
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	96.93
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	96.92
PRK10415	321	tRNA-dihydrouridine synthase B; Provisional	96.91
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.9
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	96.9
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	96.9
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	96.89
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	96.86
PLN02591	250	tryptophan synthase	96.85
PF01884	230	PcrB: PcrB family; InterPro: IPR008205 This entry	96.8
TIGR00742	318	yjbN tRNA dihydrouridine synthase A. Members of th	96.78
KOG1436|consensus	398		96.7
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	96.65
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	96.64
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	96.55
PRK04128	228	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.54
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	96.53
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	96.51
PRK13523	337	NADPH dehydrogenase NamA; Provisional	96.47
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	96.46
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	96.44
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	96.39
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	96.38
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	96.34
cd02929	370	TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH)	96.32
PRK07695	201	transcriptional regulator TenI; Provisional	96.24
PRK13587	234	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.23
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.19
cd02812	219	PcrB_like PcrB_like proteins. One member of this f	96.18
PRK04169	232	geranylgeranylglyceryl phosphate synthase-like pro	96.13
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	96.13
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	96.12
COG2022	262	ThiG Uncharacterized enzyme of thiazole biosynthes	96.11
PRK10550	312	tRNA-dihydrouridine synthase C; Provisional	96.07
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	96.03
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	96.03
PF00977	229	His_biosynth: Histidine biosynthesis protein; Inte	96.02
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	96.01
PF00724	341	Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox	96.0
PRK04302	223	triosephosphate isomerase; Provisional	95.99
TIGR01768	223	GGGP-family geranylgeranylglyceryl phosphate synth	95.98
PLN02334	229	ribulose-phosphate 3-epimerase	95.92
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	95.89
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	95.88
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	95.84
PRK01033	258	imidazole glycerol phosphate synthase subunit HisF	95.49
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	95.45
cd00564	196	TMP_TenI Thiamine monophosphate synthase (TMP synt	95.4
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	95.39
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	95.36
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	95.33
TIGR01919	243	hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy	95.27
COG0042	323	tRNA-dihydrouridine synthase [Translation, ribosom	95.22
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	95.13
cd04723	233	HisA_HisF Phosphoribosylformimino-5-aminoimidazole	95.12
PRK13586	232	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	95.05
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	94.99
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	94.97
PRK14114	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	94.82
PLN02411	391	12-oxophytodienoate reductase	94.79
PRK10605	362	N-ethylmaleimide reductase; Provisional	94.67
TIGR00693	196	thiE thiamine-phosphate pyrophosphorylase. This mo	94.61
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	94.6
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	94.59
PF01207	309	Dus: Dihydrouridine synthase (Dus); InterPro: IPR0	94.36
PRK07226	267	fructose-bisphosphate aldolase; Provisional	94.08
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	93.96
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	93.77
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	93.76
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	93.76
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	93.7
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	93.6
COG0107	256	HisF Imidazoleglycerol-phosphate synthase [Amino a	93.6
COG3010	229	NanE Putative N-acetylmannosamine-6-phosphate epim	93.4
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	93.4
PF00218	254	IGPS: Indole-3-glycerol phosphate synthase; InterP	93.35
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	93.35
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	93.24
COG0106	241	HisA Phosphoribosylformimino-5-aminoimidazole carb	93.12
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	93.09
TIGR02129	253	hisA_euk phosphoribosylformimino-5-aminoimidazole	92.99
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	92.94
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	92.91
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	92.89
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	92.88
PRK05848	273	nicotinate-nucleotide pyrophosphorylase; Provision	92.72
PRK11750	1485	gltB glutamate synthase subunit alpha; Provisional	92.42
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	92.12
COG1646	240	Predicted phosphate-binding enzymes, TIM-barrel fo	92.07
PF04309	175	G3P_antiterm: Glycerol-3-phosphate responsive anti	92.03
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	91.84
PLN02617	538	imidazole glycerol phosphate synthase hisHF	91.52
KOG2335|consensus	358		91.28
PLN02460	338	indole-3-glycerol-phosphate synthase	91.2
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	90.97
PLN02446	262	(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy	90.92
COG0214	296	SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta	90.89
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	90.59
TIGR00734	221	hisAF_rel hisA/hisF family protein. This alignment	90.59
KOG1606|consensus	296		90.49
PRK13802	695	bifunctional indole-3-glycerol phosphate synthase/	90.03
PRK03903	274	transaldolase; Provisional	89.77
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	89.58
PRK13957	247	indole-3-glycerol-phosphate synthase; Provisional	89.41
PRK02615	347	thiamine-phosphate pyrophosphorylase; Provisional	89.3
COG0134	254	TrpC Indole-3-glycerol phosphate synthase [Amino a	88.98
PRK06512	221	thiamine-phosphate pyrophosphorylase; Provisional	88.91
PRK12376	236	putative translaldolase; Provisional	88.88
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	87.79
cd01573	272	modD_like ModD; Quinolinate phosphoribosyl transfe	87.35
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	86.9
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	86.57
cd04737	351	LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d	86.39
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	86.19
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	85.64
PRK08649	368	inosine 5-monophosphate dehydrogenase; Validated	85.19
PRK05742	277	nicotinate-nucleotide pyrophosphorylase; Provision	85.11
PRK09427	454	bifunctional indole-3-glycerol phosphate synthase/	85.11
PLN02617	538	imidazole glycerol phosphate synthase hisHF	85.0
PRK12655	220	fructose-6-phosphate aldolase; Reviewed	84.54
TIGR00875	213	fsa_talC_mipB fructose-6-phosphate aldolase, TalC/	84.09
cd01568	269	QPRTase_NadC Quinolinate phosphoribosyl transferas	83.78
TIGR00078	265	nadC nicotinate-nucleotide pyrophosphorylase. Syno	83.69
PRK12653	220	fructose-6-phosphate aldolase; Reviewed	83.6
PRK01362	214	putative translaldolase; Provisional	82.97
cd03332	383	LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin	82.69
PRK07428	288	nicotinate-nucleotide pyrophosphorylase; Provision	82.55
PF02662	124	FlpD: Methyl-viologen-reducing hydrogenase, delta	82.4
PLN02898	502	HMP-P kinase/thiamin-monophosphate pyrophosphoryla	82.09
PRK12656	222	fructose-6-phosphate aldolase; Reviewed	81.29
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	81.23
PF04898	287	Glu_syn_central: Glutamate synthase central domain	80.22

>COG1304 idi Isopentenyl diphosphate isomerase (BS_ypgA, MTH48 and related proteins) [Coenzyme transport and metabolism]

Probab=99.86  E-value=5.9e-22  Score=156.13  Aligned_cols=75  Identities=39%  Similarity=0.537  Sum_probs=71.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLEL   75 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~   75 (100)
                      ++|++|||||+|.||+||||||||+|++|||||++++..|++||.+.++.+++||+..|+++|++|+.++...++
T Consensus       274 ~~vi~dGGiR~G~Dv~KAlALGA~~v~igrp~L~~l~~~g~~GV~~~le~~~~El~~~M~L~G~~~i~el~~~~l  348 (360)
T COG1304         274 IEVIADGGIRSGLDVAKALALGADAVGIGRPFLYGLAAGGEAGVERVLEIIRKELKIAMALTGAKNIEELKRVPL  348 (360)
T ss_pred             eEEEecCCCCCHHHHHHHHHhCCchhhhhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCCCcHHHhccCce
Confidence            479999999999999999999999999999999999999999999999999999999999999999999987654

>KOG0538|consensus

Probab=99.82  E-value=3.8e-21  Score=149.12  Aligned_cols=73  Identities=41%  Similarity=0.665  Sum_probs=70.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                      |||+.|||+|+|.||+|||||||+.|++|||++|+|+|+|+.||.+.++.|++|+...|.+.||+|+.++..+
T Consensus       279 i~V~lDGGVR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~efe~tmaLsGc~sv~ei~~~  351 (363)
T KOG0538|consen  279 IPVFLDGGVRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDEFELTMALSGCRSVKEITRN  351 (363)
T ss_pred             eEEEEecCcccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHHHHHHHHHhCCCchhhhCcc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999998765

>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related

Probab=99.82  E-value=1.3e-20  Score=148.08  Aligned_cols=72  Identities=35%  Similarity=0.477  Sum_probs=65.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                      +|||+|||||+|.||+||+||||++|++|||||+++...|++||.+.++.|++||+..|+++|+.++.++..
T Consensus       281 ~~i~~dgGir~g~Dv~kalaLGA~~v~igr~~l~~l~~~g~~gv~~~~~~l~~el~~~m~l~G~~~~~~l~~  352 (356)
T PF01070_consen  281 IPIIADGGIRRGLDVAKALALGADAVGIGRPFLYALAAGGEEGVERVLEILKEELKRAMFLLGARSIAELRR  352 (356)
T ss_dssp             SEEEEESS--SHHHHHHHHHTT-SEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SBGGGHTG
T ss_pred             eeEEEeCCCCCHHHHHHHHHcCCCeEEEccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCH
Confidence            589999999999999999999999999999999999989999999999999999999999999999999865

These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....

>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase

Probab=99.81  E-value=5.5e-20  Score=145.30  Aligned_cols=78  Identities=36%  Similarity=0.569  Sum_probs=73.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNL   78 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~~e~   78 (100)
                      +|||+|||||+|.||+|||||||++|++|||+|++++..|++|+.+.++.+++|++..|++.|+.|+.++....+...
T Consensus       280 ~~vi~dGGIr~G~Dv~KALALGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~~~~~~~~  357 (367)
T PLN02493        280 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTE  357 (367)
T ss_pred             CeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhhhHH
Confidence            589999999999999999999999999999999999999999999999999999999999999999999988766433

>PRK11197 lldD L-lactate dehydrogenase; Provisional

Probab=99.81  E-value=5.2e-20  Score=146.03  Aligned_cols=74  Identities=30%  Similarity=0.448  Sum_probs=71.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLE   74 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e   74 (100)
                      +|||+|||||+|.||+||||||||+|++|||||++++..|++||.+.++.|++||+..|++.|++++.++...-
T Consensus       301 ~~vi~dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~  374 (381)
T PRK11197        301 ITILADSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEMRVAMTLTGAKSISEITRDS  374 (381)
T ss_pred             CeEEeeCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCHhh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999987653

>PLN02979 glycolate oxidase

Probab=99.81  E-value=8.3e-20  Score=144.18  Aligned_cols=75  Identities=37%  Similarity=0.599  Sum_probs=72.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLEL   75 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~   75 (100)
                      ++||+|||||+|.||+||||||||+|++|||+|++++..|++||.+.++.|++|++..|++.|+.|+.++....+
T Consensus       279 ~~Vi~dGGIr~G~Di~KALALGAdaV~iGrp~L~~la~~G~~Gv~~~l~~l~~El~~~m~l~G~~~i~el~~~~~  353 (366)
T PLN02979        279 IPVFLDGGVRRGTDVFKALALGASGIFIGRPVVFSLAAEGEAGVRKVLQMLRDEFELTMALSGCRSLKEISRNHI  353 (366)
T ss_pred             CeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhChhhh
Confidence            589999999999999999999999999999999999999999999999999999999999999999999988665

>TIGR02708 L_lactate_ox L-lactate oxidase

Probab=99.80  E-value=6.8e-20  Score=144.81  Aligned_cols=75  Identities=31%  Similarity=0.503  Sum_probs=71.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLEL   75 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~   75 (100)
                      +|||+|||||+|.|++|||+||||+|++|||+|++|+..|++||.+.++.|++||+..|+++|+.++.++....+
T Consensus       284 i~vi~dGGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~El~~~M~l~G~~~i~eL~~~~l  358 (367)
T TIGR02708       284 VPIVFDSGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKELKRVMQLTGTQTIEDVKGFDL  358 (367)
T ss_pred             CcEEeeCCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCcccc
Confidence            589999999999999999999999999999999999999999999999999999999999999999999876543

Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence.

>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain

Probab=99.80  E-value=9.8e-20  Score=143.65  Aligned_cols=71  Identities=38%  Similarity=0.560  Sum_probs=68.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||+|||||+|.||+|||+||||+|++|||+|++++..|++||.+.++.|++||+..|++.|+.|+.++.
T Consensus       290 ~~vi~dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el~~~m~l~G~~~i~~l~  360 (361)
T cd04736         290 KPVLIDSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEIDRTLALIGCPDIASLT  360 (361)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcC
Confidence            58999999999999999999999999999999999988999999999999999999999999999999873

MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=99.79  E-value=1.4e-19  Score=143.62  Aligned_cols=72  Identities=32%  Similarity=0.551  Sum_probs=69.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                      +||++|||||+|.||+||||||||+|++|||||++++..|++||.+.++.+++||+..|.++|+.++.++..
T Consensus       309 ~~vi~dGGIr~G~Dv~KALaLGA~~v~iGr~~l~~l~~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l~~  380 (383)
T cd03332         309 LTVLFDSGVRTGADIMKALALGAKAVLIGRPYAYGLALGGEDGVEHVLRNLLAELDLTMGLAGIRSIAELTR  380 (383)
T ss_pred             CeEEEeCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCc
Confidence            589999999999999999999999999999999999999999999999999999999999999999998854

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain

Probab=99.77  E-value=7.6e-19  Score=137.66  Aligned_cols=71  Identities=39%  Similarity=0.553  Sum_probs=68.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||+|||||+|.||+|||+||||+|++|||||+++.+.|++||.+.++.+++||+..|++.|+.++.++.
T Consensus       272 ~~vi~~GGIr~G~Dv~kalaLGA~aV~iG~~~l~~l~~~G~~gv~~~l~~l~~EL~~~m~l~G~~~i~~l~  342 (344)
T cd02922         272 IEVYVDGGVRRGTDVLKALCLGAKAVGLGRPFLYALSAYGEEGVEKAIQILKDEIETTMRLLGVTSLDQLG  342 (344)
T ss_pred             ceEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhC
Confidence            58999999999999999999999999999999999999999999999999999999999999999999874

FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit.

>PLN02535 glycolate oxidase

Probab=99.76  E-value=1.4e-18  Score=137.27  Aligned_cols=73  Identities=38%  Similarity=0.619  Sum_probs=70.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                      +|||+|||||+|.||+|||+|||++|++||++|++++..|++|+.+.++.+++|++..|.++|+.++.++...
T Consensus       279 ipVi~dGGIr~g~Dv~KALalGA~aV~vGr~~l~~l~~~g~~gv~~~l~~l~~el~~~m~l~G~~~i~el~~~  351 (364)
T PLN02535        279 VPVLLDGGVRRGTDVFKALALGAQAVLVGRPVIYGLAAKGEDGVRKVIEMLKDELEITMALSGCPSVKDITRS  351 (364)
T ss_pred             CCEEeeCCCCCHHHHHHHHHcCCCEEEECHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhh
Confidence            5899999999999999999999999999999999999899999999999999999999999999999998763

>PRK05437 isopentenyl pyrophosphate isomerase; Provisional

Probab=99.75  E-value=5.1e-18  Score=133.04  Aligned_cols=85  Identities=20%  Similarity=0.257  Sum_probs=80.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH------HH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF------LE   74 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~------~e   74 (100)
                      +|||++|||+++.|++|++++|||+|++|++||+++...|++++.++++.|.+||+..|+++|+.++.++..      .+
T Consensus       262 ipvia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~eL~~~~~~~~~~  341 (352)
T PRK05437        262 LPIIASGGIRNGLDIAKALALGADAVGMAGPFLKAALEGGEEAVIELIEQWIEELKIAMFLTGAKNIAELRKVPLVLSGE  341 (352)
T ss_pred             CeEEEECCCCCHHHHHHHHHcCCCEEEEhHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCCCCEEecHh
Confidence            589999999999999999999999999999999999888999999999999999999999999999999876      67


Q ss_pred             HHHHHHHcCcC
Q psy7649          75 LNNLVPTLLLG   85 (100)
Q Consensus        75 ~~e~~~~lG~~   85 (100)
                      +++|++++|++
T Consensus       342 ~~~~~~~~~~~  352 (352)
T PRK05437        342 LREWLEQRGID  352 (352)
T ss_pred             HHHHHHHhCCC
Confidence            99999998863

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=99.75  E-value=1.5e-18  Score=136.43  Aligned_cols=73  Identities=33%  Similarity=0.480  Sum_probs=70.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                      +|||+|||||+|.|++|||+||||+|++||+++++++..|++||.+.++.+++||+..|.+.|+.++.++...
T Consensus       277 i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~el~~~  349 (351)
T cd04737         277 VPIIFDSGVRRGEHVFKALASGADAVAVGRPVLYGLALGGAQGVASVLEHLNKELKIVMQLAGTRTIEDVKRT  349 (351)
T ss_pred             CeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhCCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999998643

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain

Probab=99.70  E-value=3.2e-17  Score=127.15  Aligned_cols=70  Identities=21%  Similarity=0.341  Sum_probs=67.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||++||||++.|++||+++|||+|++|+|||+++.. |++++.++++.|++||+..|+++|++|+.++.
T Consensus       256 ipIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~~~~~-g~~~~~~~i~~~~~el~~~m~~~G~~si~el~  325 (326)
T cd02811         256 LPLIASGGIRNGLDIAKALALGADLVGMAGPFLKAALE-GEEAVIETIEQIIEELRTAMFLTGAKNLAELK  325 (326)
T ss_pred             CcEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhc
Confidence            58999999999999999999999999999999999887 99999999999999999999999999999875

Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.

>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes

Probab=99.69  E-value=5.7e-17  Score=124.00  Aligned_cols=71  Identities=42%  Similarity=0.615  Sum_probs=68.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||++|||+++.|++|++++|||+|++||||++++.+.|++++.++++.+++||+..|.+.|+.|+.++.
T Consensus       228 ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~l~~~~~~g~~~v~~~i~~l~~el~~~m~~~G~~~i~~l~  298 (299)
T cd02809         228 IEVLLDGGIRRGTDVLKALALGADAVLIGRPFLYGLAAGGEAGVAHVLEILRDELERAMALLGCASLADLD  298 (299)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHhC
Confidence            68999999999999999999999999999999999988999999999999999999999999999998874

This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.

>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2

Probab=99.67  E-value=1.3e-16  Score=124.15  Aligned_cols=74  Identities=22%  Similarity=0.280  Sum_probs=70.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLE   74 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e   74 (100)
                      +|||++|||+++.|++|+|++|||+|++||+||.++...|++++.++++.+++||+..|+++|++|+.++...+
T Consensus       255 ipVIasGGI~~~~di~kaLalGAd~V~igr~~L~~~~~~g~~~v~~~i~~~~~eL~~~m~~~G~~~i~el~~~~  328 (333)
T TIGR02151       255 APIIASGGLRTGLDVAKAIALGADAVGMARPFLKAALDEGEEAVIEEIELIIEELKVAMFLTGAKTIAELKKVP  328 (333)
T ss_pred             CeEEEECCCCCHHHHHHHHHhCCCeehhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHccCC
Confidence            58999999999999999999999999999999999887899999999999999999999999999999987654

Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.

>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain

Probab=99.66  E-value=1.8e-16  Score=125.67  Aligned_cols=86  Identities=34%  Similarity=0.369  Sum_probs=60.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +||++||||+|+.|++||++||||+|++||++|++++|.         ++.|+.++...+.+.++......++.|+.+.+
T Consensus       286 i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l~al~c~~~~~c~~~~cP~Giat~~~~~~~~~~~~~~~~~v~~~~~~~  365 (392)
T cd02808         286 VSLIASGGLRTGADVAKALALGADAVGIGTAALIALGCIQARKCHTNTCPVGVATQDPELRRRLDVEGKAERVANYLKSL  365 (392)
T ss_pred             CeEEEECCCCCHHHHHHHHHcCCCeeeechHHHHhcchHHHHhcCCCCCCcccccCChHhhhhcCCchHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999775         34444444444444444444444455555555


Q ss_pred             HHHHHHHHHHcCcCC
Q psy7649          72 FLELNNLVPTLLLGS   86 (100)
Q Consensus        72 ~~e~~e~~~~lG~~s   86 (100)
                      ..|+++.+..+|+++
T Consensus       366 ~~el~~~m~~~G~~~  380 (392)
T cd02808         366 AEELRELAAALGKRS  380 (392)
T ss_pred             HHHHHHHHHHhCCCC
Confidence            555555555555544

GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=99.64  E-value=4.1e-17  Score=129.12  Aligned_cols=85  Identities=32%  Similarity=0.391  Sum_probs=65.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      |+|++|||++|+.||+||+|||||+|++||++|.+++|.         ++.|+.++...+++.++......++.|+...+
T Consensus       275 V~Li~sGgl~t~~dv~kalaLGAD~v~igt~~liAlGC~~~~~C~~~~CP~Giatq~~~l~~~l~~~~~~~~v~n~~~~~  354 (368)
T PF01645_consen  275 VSLIASGGLRTGDDVAKALALGADAVYIGTAALIALGCIQCRKCHTGTCPVGIATQDPKLRKRLDVEEKAERVANFLKAC  354 (368)
T ss_dssp             SEEEEESS--SHHHHHHHHHCT-SEEE-SHHHHHHCT--S---CCCT--TTSSS---CCHH--CT----HHHHHHHHHHH
T ss_pred             eEEEEeCCccCHHHHHHHHhcCCCeeEecchhhhhcchHHHhcccCCCCCceeeecCcccccccccccHHHHHHHHHHHH
Confidence            579999999999999999999999999999999999984         57899999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCcC
Q psy7649          72 FLELNNLVPTLLLG   85 (100)
Q Consensus        72 ~~e~~e~~~~lG~~   85 (100)
                      ..|++++++++|++
T Consensus       355 ~~el~~~~~a~G~~  368 (368)
T PF01645_consen  355 AEELREILAALGKR  368 (368)
T ss_dssp             HHHHHHHHHHHT-S
T ss_pred             HHHHHHHHHHhCCC
Confidence            99999999999985

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]

Probab=99.60  E-value=3.8e-16  Score=126.96  Aligned_cols=93  Identities=32%  Similarity=0.357  Sum_probs=86.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +.|++|||++||.||+||++||||+|++|+.+|.++.|.         ++.||+++.+.+++.++..-...++.|+...+
T Consensus       375 v~l~~~Ggl~Tg~DVaka~aLGAd~v~~gTa~lia~GCim~r~CH~~tCp~GIaTqdp~Lrkrl~~~~~~~~v~N~~~~~  454 (485)
T COG0069         375 VKLIADGGLRTGADVAKAAALGADAVGFGTAALVALGCIMCRVCHTGTCPVGIATQDPELRKRLDVEGKPERVINYFTFV  454 (485)
T ss_pred             eEEEecCCccCHHHHHHHHHhCcchhhhchHHHHHhhhHhhhhccCCCCCceeeecCHHHHhhcCccccHHHHHHHHHHH
Confidence            468999999999999999999999999999999999883         68999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCcCCCCCCCcc
Q psy7649          72 FLELNNLVPTLLLGSIQPPSKR   93 (100)
Q Consensus        72 ~~e~~e~~~~lG~~s~~~~~~~   93 (100)
                      ..|++++++++|++++++..=|
T Consensus       455 a~e~rella~lG~~~l~el~g~  476 (485)
T COG0069         455 AEELRELLAALGKRSLSELIGR  476 (485)
T ss_pred             HHHHHHHHHHhCCCCHHHHhcc
Confidence            9999999999999998865544

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=99.43  E-value=5.4e-14  Score=125.13  Aligned_cols=89  Identities=24%  Similarity=0.312  Sum_probs=80.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      |+|++|||++||.||+||++||||.|++|+.+|.+++|.         |+.|++++...+++++.. -....+.|+...+
T Consensus      1068 v~l~a~Ggl~t~~Dv~kA~aLGAd~~~~gt~~lialGCi~~r~Ch~~~CPvGiaTqd~~lr~~~~~-~~~~~v~nf~~~~ 1146 (1485)
T PRK11750       1068 IRLQVDGGLKTGLDVIKAAILGAESFGFGTGPMVALGCKYLRICHLNNCATGVATQDEKLRKNHYH-GLPEMVMNYFEFI 1146 (1485)
T ss_pred             eEEEEcCCcCCHHHHHHHHHcCCcccccchHHHHHcCCHHHHhhcCCCCCcEEeccCHHHHhhhcc-chHHHHHHHHHHH
Confidence            579999999999999999999999999999999999983         688999999998886655 6778899999999


Q ss_pred             HHHHHHHHHHcCcCCCCCC
Q psy7649          72 FLELNNLVPTLLLGSIQPP   90 (100)
Q Consensus        72 ~~e~~e~~~~lG~~s~~~~   90 (100)
                      ..|++++++++|++++++.
T Consensus      1147 ~~el~~~la~lG~~s~~el 1165 (1485)
T PRK11750       1147 AEETREWMAQLGVRSLEDL 1165 (1485)
T ss_pred             HHHHHHHHHHhCCCCHHHh
Confidence            9999999999999988744

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=99.33  E-value=9.4e-13  Score=102.95  Aligned_cols=74  Identities=20%  Similarity=0.252  Sum_probs=62.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH------------------HHH-----hc-------cCHH-------H
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL------------------WGL-----AH-------SGSN-------G   43 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L------------------~al-----~~-------~g~~-------g   43 (100)
                      +|||+||||+++.|++|||++|||+|++|++|+                  ..+     ..       .|.+       .
T Consensus       202 ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~~~~~~espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eG~e~~v~~~G~  281 (326)
T PRK05458        202 KPIIADGGIRTHGDIAKSIRFGATMVMIGSLFAGHEESPGKTVEIDGKLYKEYFGSASEFQKGEYKNVEGKKILVPHKGS  281 (326)
T ss_pred             CCEEEeCCCCCHHHHHHHHHhCCCEEEechhhcCCccCCCceeeecchhHHHhhCcHhhhccccccccCCceEEecccCC
Confidence            589999999999999999999999999999998                  222     11       2222       4


Q ss_pred             HHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649          44 AARVLQSLVHKILPEAVADKVHNAYSIFFLE   74 (100)
Q Consensus        44 v~~~i~~l~~el~~~m~l~g~~n~~~l~~~e   74 (100)
                      +.+.+..|..+|+..|...|++|+.++.+.+
T Consensus       282 l~~~l~~l~~gLr~~m~~~Ga~~i~el~~~~  312 (326)
T PRK05458        282 LKDTLTEMEQDLQSSISYAGGRDLDAIRKVD  312 (326)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCHHHHhcCC
Confidence            7888999999999999999999999987533

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.26  E-value=3.9e-12  Score=100.75  Aligned_cols=75  Identities=24%  Similarity=0.291  Sum_probs=64.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH------------------------HHHHHHHH-------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS------------------------NGAARVLQ-------   49 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~------------------------~gv~~~i~-------   49 (100)
                      +|||+||||+++.|++|||++|||.|++|++|+.+..+.|+                        -.+.+.+.       
T Consensus       257 vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg~~~~~gm~s~~~~~~eg~~~~~~~~g~~~~~~~~~~~~~~  336 (368)
T PRK08649        257 VHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPGRGWHWGMAAPHPSLPRGTRIKVGTTGSLEQILFGPSHLPD  336 (368)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCCcccccCcccCCCcCCCceEEeCCCcCcHHHHhcCcccccc
Confidence            58999999999999999999999999999999987666543                        13556655       


Q ss_pred             ---HHHHHHhHHHHhcccccHHHhhHHHH
Q psy7649          50 ---SLVHKILPEAVADKVHNAYSIFFLEL   75 (100)
Q Consensus        50 ---~l~~el~~~m~l~g~~n~~~l~~~e~   75 (100)
                         ++...|+..|.-.|.+|+.++++.|+
T Consensus       337 ~~~~~~g~l~~~m~~~g~~~~~~~~~~~~  365 (368)
T PRK08649        337 GTHNLVGALRRSMATLGYSDLKEFQKVEV  365 (368)
T ss_pred             hHHHHHHHHHHHHHhcCCCcHHHHhhcCe
Confidence               88889999999999999999987654

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=99.16  E-value=3.4e-11  Score=95.54  Aligned_cols=75  Identities=23%  Similarity=0.276  Sum_probs=59.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---H--------------------H----HHHHH-----
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS---N--------------------G----AARVL-----   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~---~--------------------g----v~~~i-----   48 (100)
                      +|||+||||+++.|++|||++|||+|++|++|+.+..+.|.   .                    |    +.+.+     
T Consensus       256 vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a~Eapg~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gp~~  335 (369)
T TIGR01304       256 VHVIADGGIETSGDLVKAIACGADAVVLGSPLARAAEAPGRGYFWPAAAAHPRLPRGVVTESGTVGEAPTLEEILHGPST  335 (369)
T ss_pred             ceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhhhcCCCCCCccchhhcCccCCccccccccccCCCCcHHHHeeCCCC
Confidence            58999999999999999999999999999999998876542   1                    2    33332     


Q ss_pred             -----HHHHHHHhHHHHhcccccHHHhhHHHH
Q psy7649          49 -----QSLVHKILPEAVADKVHNAYSIFFLEL   75 (100)
Q Consensus        49 -----~~l~~el~~~m~l~g~~n~~~l~~~e~   75 (100)
                           .++.--|+..|.-+|..++.++.+.++
T Consensus       336 ~~~~~~n~~g~~~~~~~~~g~~~~~~~~~~~~  367 (369)
T TIGR01304       336 LPDGVENFEGGLKRAMAKCGYTDLKEFQKVSL  367 (369)
T ss_pred             CCcchhhhHHHHHHHHHHcCchhhhhhhhcce
Confidence                 356667888888888888887776553

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial

Probab=99.08  E-value=7.2e-11  Score=92.26  Aligned_cols=74  Identities=20%  Similarity=0.252  Sum_probs=53.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH-------------------------------------HH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS-------------------------------------NG   43 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~-------------------------------------~g   43 (100)
                      +|||+|||||++.||+||||+|||+|++|++|--.-...|+                                     -.
T Consensus       199 ~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~~Espg~~~~~~g~~~k~y~g~~~~~~~~~~~~~eg~~~~v~~~g~  278 (321)
T TIGR01306       199 KPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGHEESPGETVEKDGKLYKEYFGSASEFQKGEHKNVEGKKMFVEHKGS  278 (321)
T ss_pred             CeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCcccCCCceEeeCCeEHhhhcCchhhhcccccccccceEEEeccCCC
Confidence            58999999999999999999999999999988532211110                                     01


Q ss_pred             HHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649          44 AARVLQSLVHKILPEAVADKVHNAYSIFFLE   74 (100)
Q Consensus        44 v~~~i~~l~~el~~~m~l~g~~n~~~l~~~e   74 (100)
                      +.+.+..+...|+..|.-.|++|+.++...+
T Consensus       279 ~~~~~~~~~~glr~~~~~~G~~~l~~~~~~~  309 (321)
T TIGR01306       279 LSDTLIEMQQDLQSSISYAGGKDLDSLRTVD  309 (321)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcHHHHhhCC
Confidence            4455566667777777777777777766543

A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=99.06  E-value=1.7e-10  Score=94.54  Aligned_cols=72  Identities=15%  Similarity=0.184  Sum_probs=58.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS---------------------------------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~---------------------------------------   41 (100)
                      +|||+|||||++.||+||||+|||+|++|++|--.-.+.|+                                       
T Consensus       353 ~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg~~~~~~g~~~k~yrgm~s~~a~~~~ry~~~~~~~~~~~eg  432 (502)
T PRK07107        353 IPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPTNKVNINGNYMKEYWGEGSNRARNWQRYDLGGDKKLSFEEG  432 (502)
T ss_pred             ceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCCcEEEECCEEEEEeecccCHhhhhccccccccccccccCCc
Confidence            58999999999999999999999999999998542211110                                       


Q ss_pred             --------HHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          42 --------NGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        42 --------~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                              -.+...+..+...|+..|.-.|+.|+.++..
T Consensus       433 v~~~v~~~g~~~~~~~~~~~glrs~~~y~g~~~i~~l~~  471 (502)
T PRK07107        433 VDSYVPYAGSLKDNVAITLSKVRSTMCNCGALSIPELQQ  471 (502)
T ss_pred             cEEEecCCCCHHHHHHHHHHHHHHhhhccCCCcHHHHHh
Confidence                    0266777888889999999999999988875

>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic

Probab=99.01  E-value=2.7e-10  Score=89.69  Aligned_cols=72  Identities=19%  Similarity=0.223  Sum_probs=55.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC-----------------H-----------------H----
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG-----------------S-----------------N----   42 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g-----------------~-----------------~----   42 (100)
                      +|||+|||||++.||+||||+|||+|++|+.+.-.-...|                 .                 +    
T Consensus       213 v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg~~i~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~e~  292 (343)
T TIGR01305       213 GHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGGEVIERNGRKFKLFYGMSSDTAMKKHAGGVAEYRASEGKTV  292 (343)
T ss_pred             CeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcceeEeECCEEEEEEeccchHHHHhhccCcccccccccCceE
Confidence            5899999999999999999999999999966532111100                 0                 0    


Q ss_pred             ------HHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          43 ------GAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        43 ------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                            .+.+.+..+...|+..|.-.|+.|+.++..
T Consensus       293 ~vp~kG~v~~~l~~l~gGlrs~m~Y~Ga~~i~el~~  328 (343)
T TIGR01305       293 EVPYRGDVENTILDILGGLRSACTYVGAAKLKELSK  328 (343)
T ss_pred             EeccCCcHHHHHHHHHHHHHHHhhccCcCcHHHHHh
Confidence                  256667788888888888888888888754

A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.98  E-value=3.8e-10  Score=91.66  Aligned_cols=72  Identities=22%  Similarity=0.282  Sum_probs=59.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS---------------------------------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~---------------------------------------   41 (100)
                      +|||+||||+++.|++|||++|||+|++|+.|-..-.+.|+                                       
T Consensus       332 ~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg~~~~~~g~~~k~y~gm~s~~a~~~~~~~r~~~~~~~~~~~  411 (486)
T PRK05567        332 IPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPGEVELYQGRSYKSYRGMGSLGAMSKGSSDRYFQSVNAADKL  411 (486)
T ss_pred             CeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccccCCCceEEECCEEEEEEeccchHHHHhccccccccccccccccc
Confidence            58999999999999999999999999999988544321110                                       


Q ss_pred             ------------HHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          42 ------------NGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        42 ------------~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                                  -.+.+.+..+...|+..|.-.|+.|+.++..
T Consensus       412 ~~~g~~~~~~~~g~~~~~~~~~~~g~~~~~~~~g~~~~~~~~~  454 (486)
T PRK05567        412 VPEGIEGRVPYKGPLSEIIHQLMGGLRSGMGYTGAATIEELRE  454 (486)
T ss_pred             CCCceEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHh
Confidence                        1267778889999999999999999999875

>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase

Probab=98.98  E-value=2.8e-10  Score=89.98  Aligned_cols=74  Identities=22%  Similarity=0.242  Sum_probs=58.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC----------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG----------------------------------------   40 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g----------------------------------------   40 (100)
                      +|||+||||+++.||+||||+|||+|++|++|--.-.+.|                                        
T Consensus       212 v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt~EsPG~~~~~~g~~~K~yrGMgS~~A~~~~~~~~~ry~~~~~~~~  291 (352)
T PF00478_consen  212 VPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEVIYIDGKRYKKYRGMGSLGAMKKRRGSGDRYFQAEDKKF  291 (352)
T ss_dssp             SEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTBTTSSSEEEEETTEEEEEEEETTSHHHHHHHSTTGCTCTSSTSSTS
T ss_pred             CceeecCCcCcccceeeeeeecccceeechhhccCcCCCCceEEECCeEEEEecccccHHHHhhccccchhccccccccc
Confidence            6899999999999999999999999999988754332211                                        


Q ss_pred             -----------HHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649          41 -----------SNGAARVLQSLVHKILPEAVADKVHNAYSIFFLE   74 (100)
Q Consensus        41 -----------~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e   74 (100)
                                 .-.+.+.+..+...|+..|.-.|+.|+.++....
T Consensus       292 v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~  336 (352)
T PF00478_consen  292 VPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA  336 (352)
T ss_dssp             SSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred             cccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence                       0135566788899999999999999999998764

These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.95  E-value=7.5e-10  Score=90.51  Aligned_cols=72  Identities=25%  Similarity=0.316  Sum_probs=56.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC-----------------H----------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG-----------------S----------------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g-----------------~----------------------   41 (100)
                      +|+|+||||+++.|++||+++|||+|++|+.|.-.-.+.+                 +                      
T Consensus       345 v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~~e~~~~~~~~~g~~~k~yrGm~s~~a~~~~~~~~~y~~~~~~~~~  424 (495)
T PTZ00314        345 VPCIADGGIKNSGDICKALALGADCVMLGSLLAGTEEAPGEYFFKDGVRLKVYRGMGSLEAMLSKESGERYLDENETIKV  424 (495)
T ss_pred             CeEEecCCCCCHHHHHHHHHcCCCEEEECchhccccccCCceeeeCCeEEEEEeccchHHHhhccccccccccccccccc
Confidence            5899999999999999999999999999999865322111                 0                      


Q ss_pred             -----------HHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          42 -----------NGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        42 -----------~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                                 -.+.+.+..+...|+..|.-.|+.|+.++..
T Consensus       425 ~egv~~~v~~~g~~~~~~~~~~~gl~~~~~y~g~~~i~~~~~  466 (495)
T PTZ00314        425 AQGVSGSVVDKGSVAKLIPYLVKGVKHGMQYIGAHSIPELHE  466 (495)
T ss_pred             CCceEEeeecCCcHHHHHHHHHHHHHHHHHhhCCCcHHHHHh
Confidence                       1256667777788888888888888877654

>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=98.95  E-value=4.7e-10  Score=88.36  Aligned_cols=72  Identities=18%  Similarity=0.189  Sum_probs=58.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH----------------------------------H----
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS----------------------------------N----   42 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~----------------------------------~----   42 (100)
                      +|||+||||+++.||+|||++|||+|++|+.|--.-.+.|+                                  +    
T Consensus       214 vpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~yrGMgS~~Am~~~~g~~~ry~~~EG~~~  293 (346)
T PRK05096        214 GQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEESGGEIVEENGEKFMLFYGMSSESAMKRHVGGVAEYRAAEGKTV  293 (346)
T ss_pred             CCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccCCCcEEEECCEEEEEEeccccHHHHhhccCcccccccccCceE
Confidence            58999999999999999999999999999988432221111                                  0    


Q ss_pred             ------HHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          43 ------GAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        43 ------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                            .+...+..+...|+..|.-.|+.|+.++..
T Consensus       294 ~Vp~kG~v~~~i~~l~gGlrs~m~Y~Ga~~i~el~~  329 (346)
T PRK05096        294 KLPLRGPVENTARDILGGLRSACTYVGASRLKELTK  329 (346)
T ss_pred             EeccCCcHHHHHHHHHHHHHHHHcccCcCcHHHHHh
Confidence                  266778888999999999999999999864

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.94  E-value=6.6e-10  Score=89.16  Aligned_cols=72  Identities=22%  Similarity=0.267  Sum_probs=58.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH--------------------------------H------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS--------------------------------N------   42 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~--------------------------------~------   42 (100)
                      +|||+||||+++.|++|||++|||+|++|++|.-.-.+.|+                                +      
T Consensus       257 vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg~~~~~~g~~~K~yrGmgS~~Am~~~~~~ry~~~~~~~~~~  336 (404)
T PRK06843        257 ICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKK  336 (404)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCCcEEEECCEEEEEEeccchHHHHhccccccccccccccccc
Confidence            58999999999999999999999999999999753222110                                0      


Q ss_pred             --------------HHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          43 --------------GAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        43 --------------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                                    .+.+.+..+...|+..|.-.|++|+.++..
T Consensus       337 ~v~eGveg~v~~~G~v~~~~~~l~gglrs~m~y~Ga~~i~el~~  380 (404)
T PRK06843        337 LVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKI  380 (404)
T ss_pred             cCCCccEEEecCCCCHHHHHHHHHHHHHHHhhccCCCcHHHHHh
Confidence                          156677788888999999999999988875

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.91  E-value=1.3e-09  Score=88.83  Aligned_cols=72  Identities=19%  Similarity=0.234  Sum_probs=54.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhc------------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAH------------------------------------------   38 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~------------------------------------------   38 (100)
                      +|+|+||||+++.|++|||++|||+|++|+.|--.-..                                          
T Consensus       329 ~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~~~~~~~g~~~k~yrGmgs~~a~~~~~~~~ry~~~~~~~~  408 (475)
T TIGR01303       329 GHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGDLMRDRDGRPYKESFGMASKRAVVARTGADNAFDRARKAL  408 (475)
T ss_pred             CcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCceEEeECCEEEEEEecccCHHHHhhccccchhhhhhcccc
Confidence            58999999999999999999999999999988422211                                          


Q ss_pred             --cCHHH-----------HHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          39 --SGSNG-----------AARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        39 --~g~~g-----------v~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                        +|.+|           +.+.+..+...|+..|.-.|++|+.++..
T Consensus       409 v~eGv~~~~~~~~~~~g~~~~~i~~~~~gl~s~~~y~g~~~i~~~~~  455 (475)
T TIGR01303       409 FEEGISTSRMGLDPDRGGVEDLIDHIISGVRSSCTYAGASSLEEFHE  455 (475)
T ss_pred             ccCceecccccccCCCCCHHHHHHHHHHHHHHHhhhcCCCcHHHHHh
Confidence              11111           45666777777888888888888877654

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=98.89  E-value=1.4e-09  Score=84.74  Aligned_cols=73  Identities=25%  Similarity=0.243  Sum_probs=60.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS---------------------------------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~---------------------------------------   41 (100)
                      +|||+||||+++.|++||+++|||.|++|+.|+-.-.+.|+                                       
T Consensus       198 vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t~Es~g~~~~~~g~~~~~~~g~~s~~~~~~~~~~~~~~~~~~~~~~  277 (325)
T cd00381         198 VPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGTDESPGEYIEINGKRYKEYRGMGSLGAMKKGGGDRYFGEEAKKLVP  277 (325)
T ss_pred             CcEEecCCCCCHHHHHHHHHcCCCEEEecchhcccccCCCcEEEECCeeeeeEecccchhhhhcCccccccccccccccC
Confidence            58999999999999999999999999999999875443321                                       


Q ss_pred             ----------HHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          42 ----------NGAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        42 ----------~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                                -.+.+.+..+...|+..|.-.|++|+.++...
T Consensus       278 eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~l~~~~~~  319 (325)
T cd00381         278 EGVEGIVPYKGSVKDVLPQLVGGLRSSMGYCGAKSLKELQEK  319 (325)
T ss_pred             CceEEEEecCCcHHHHHHHHHHHHHHHHHhcCCCcHHHHHhc
Confidence                      02566777888888899999999998888764

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=98.86  E-value=5.2e-09  Score=81.24  Aligned_cols=63  Identities=16%  Similarity=0.190  Sum_probs=53.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||++|||+|+.|++|++.+|||+|.+++++++    .|+    ..++.+.+||+..|...|..++.++.
T Consensus       240 ipIig~GGI~s~~Da~e~l~aGA~~V~v~t~~~~----~g~----~~~~~i~~~L~~~l~~~g~~~i~e~~  302 (334)
T PRK07565        240 ADLAATTGVHDAEDVIKMLLAGADVVMIASALLR----HGP----DYIGTILRGLEDWMERHGYESLQQFR  302 (334)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCceeeehHHhh----hCc----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            5899999999999999999999999999999986    344    35667778888888888888877754

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.78  E-value=7.7e-09  Score=84.87  Aligned_cols=73  Identities=21%  Similarity=0.213  Sum_probs=57.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS---------------------------------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~---------------------------------------   41 (100)
                      +|||+||||+++.|++|||++||++|++|+.|...-.+.|+                                       
T Consensus       352 vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~~~~~~~g~~~k~yrgmgs~~a~~~~~~~ry~~~~~~~~v~  431 (505)
T PLN02274        352 VPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPGEYFYQDGVRVKKYRGMGSLEAMTKGSDQRYLGDTAKLKIA  431 (505)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCcceeeeCCeEEEEEeccchHHHHhccccccccccCcccccC
Confidence            58999999999999999999999999999999765443221                                       


Q ss_pred             H----------HHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          42 N----------GAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        42 ~----------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                      +          .+...+..+...|+..|.-.|++|+.++..+
T Consensus       432 egv~~~v~~~g~~~~~~~~~~~g~~~~~~y~g~~~~~~~~~~  473 (505)
T PLN02274        432 QGVSGAVADKGSVLKFVPYTMQAVKQGFQDLGASSLQSAHEL  473 (505)
T ss_pred             CceEEecccCCCHHHHHHHHHHHHHHhhhhcCcchHHHHHhh
Confidence            1          1334566777778888888888888877665

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.70  E-value=1.7e-08  Score=82.50  Aligned_cols=36  Identities=33%  Similarity=0.426  Sum_probs=33.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGL   36 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al   36 (100)
                      +|+|++|||+++.|++|||++||++|++|+.|+-.-
T Consensus       331 ~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~  366 (479)
T PRK07807        331 AHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTY  366 (479)
T ss_pred             CcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCc
Confidence            589999999999999999999999999999997543

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.63  E-value=1.1e-08  Score=82.54  Aligned_cols=39  Identities=36%  Similarity=0.543  Sum_probs=34.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS   39 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~   39 (100)
                      +|||+||||+++.|++|||++||++|++|+.|.-.-.+.
T Consensus       328 vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~p  366 (450)
T TIGR01302       328 IPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESP  366 (450)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCC
Confidence            589999999999999999999999999999987655443

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=98.61  E-value=8.1e-08  Score=74.63  Aligned_cols=63  Identities=19%  Similarity=0.220  Sum_probs=53.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +||+++|||+|+.|+++.+..|||+|.+++++++    .|+.    .+..+.+||...|.-.|..++.++.
T Consensus       238 ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~----~gp~----~~~~i~~~L~~~l~~~g~~~i~e~~  300 (325)
T cd04739         238 ASLAASGGVHDAEDVVKYLLAGADVVMTTSALLR----HGPD----YIGTLLAGLEAWMEEHGYESVQQLR  300 (325)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhh----cCch----HHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            6899999999999999999999999999999884    3543    5556778888888888888887754

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=98.48  E-value=3.5e-07  Score=69.64  Aligned_cols=62  Identities=19%  Similarity=0.277  Sum_probs=53.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||+.|||+|+.|+.+++..|||+|.+||++++    .+     ..+..++++|...|.-.|..++.++.
T Consensus       235 ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~----~p-----~~~~~i~~~l~~~~~~~g~~~~~e~~  296 (300)
T TIGR01037       235 IPIIGVGGITSFEDALEFLMAGASAVQVGTAVYY----RG-----FAFKKIIEGLIAFLKAEGFTSIEELI  296 (300)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCceeecHHHhc----Cc-----hHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            5899999999999999999999999999999884    22     45677888999999999988888764

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>PLN02826 dihydroorotate dehydrogenase

Probab=98.46  E-value=4.9e-07  Score=72.74  Aligned_cols=63  Identities=19%  Similarity=0.270  Sum_probs=53.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||.+|||.|+.|+++.+..||++|.+++.+++    .|+.    .+..+.+||...|...|..++.++.
T Consensus       342 ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~----~Gp~----~i~~I~~eL~~~l~~~G~~si~e~i  404 (409)
T PLN02826        342 IPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY----EGPA----LIPRIKAELAACLERDGFKSIQEAV  404 (409)
T ss_pred             CcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh----cCHH----HHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            5899999999999999999999999999998886    4653    5566778888888888888887753

>COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only]

Probab=98.44  E-value=1.8e-07  Score=73.52  Aligned_cols=48  Identities=29%  Similarity=0.351  Sum_probs=42.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i   48 (100)
                      ||||++|||.+|.+++.|++|||+.|.+|+.|+..-.|.-++..++.+
T Consensus       185 iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~t~Ea~a~~~~K~~l  232 (336)
T COG2070         185 IPVIAAGGIADGRGIAAALALGADGVQMGTRFLATKEADASDAYKQAL  232 (336)
T ss_pred             CCEEEecCccChHHHHHHHHhccHHHHhhhhhhcccccCCCHHHHHHH
Confidence            699999999999999999999999999999999887776566666655

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=98.38  E-value=6.3e-07  Score=68.02  Aligned_cols=62  Identities=18%  Similarity=0.272  Sum_probs=51.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||+.|||.++.|+.+++..|||+|.+||+++.     ++    ..++.+++++...|...|..++.++.
T Consensus       232 ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~-----~p----~~~~~i~~~l~~~~~~~g~~~~~~~~  293 (296)
T cd04740         232 IPIIGVGGIASGEDALEFLMAGASAVQVGTANFV-----DP----EAFKEIIEGLEAYLDEEGIKSIEELV  293 (296)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhc-----Ch----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            5899999999999999999999999999999884     33    24456677777777778877777653

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=98.37  E-value=8.1e-07  Score=67.74  Aligned_cols=62  Identities=19%  Similarity=0.231  Sum_probs=52.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +||++.|||+|+.|+.+.++.|||+|.+||+++.     ++    ..++.++++++..|-..|..++.++.
T Consensus       235 ipvi~~GGI~~~~da~~~l~aGAd~V~igr~ll~-----~P----~~~~~i~~~l~~~~~~~g~~~i~~~~  296 (301)
T PRK07259        235 IPIIGMGGISSAEDAIEFIMAGASAVQVGTANFY-----DP----YAFPKIIEGLEAYLDKYGIKSIEEIV  296 (301)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCceeEcHHHhc-----Cc----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            6899999999999999999999999999999884     33    44566778888888888888887754

>PRK02506 dihydroorotate dehydrogenase 1A; Reviewed

Probab=98.35  E-value=1.7e-06  Score=66.87  Aligned_cols=63  Identities=24%  Similarity=0.337  Sum_probs=52.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||+.|||.|+.|+++.+..||++|.+++.+++    .|++    .+..+.+||+..|.-.|..++.++.
T Consensus       242 ipIig~GGI~s~~da~e~i~aGA~~Vqv~ta~~~----~gp~----~~~~i~~~L~~~l~~~g~~si~e~~  304 (310)
T PRK02506        242 IQIIGTGGVKTGRDAFEHILCGASMVQVGTALHK----EGPA----VFERLTKELKAIMAEKGYQSLEDFR  304 (310)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCHHhhhHHHHH----hChH----HHHHHHHHHHHHHHHhCCCCHHHHh
Confidence            5899999999999999999999999999999885    3443    4456677888888888888888764

>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1

Probab=98.31  E-value=3.8e-07  Score=70.87  Aligned_cols=49  Identities=29%  Similarity=0.332  Sum_probs=38.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQ   49 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~   49 (100)
                      +|||+.|||.++.+++.||+||||.|.+|+.|+.+-.+.-++..++.+-
T Consensus       191 iPViaAGGI~dg~~iaaal~lGA~gV~~GTrFl~t~Es~~~~~~K~~l~  239 (330)
T PF03060_consen  191 IPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASDAYKQALV  239 (330)
T ss_dssp             S-EEEESS--SHHHHHHHHHCT-SEEEESHHHHTSTTS-S-HHHHHHHH
T ss_pred             CcEEEecCcCCHHHHHHHHHcCCCEeecCCeEEecccccChHHHHHHHH
Confidence            6999999999999999999999999999999998777766666666653

13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.

>KOG0399|consensus

Probab=98.26  E-value=4.3e-07  Score=80.94  Aligned_cols=87  Identities=24%  Similarity=0.198  Sum_probs=72.6

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                      -+-.||++|||.||+-|-+||||..++++..|.+++|.         ++-|++++.+.|+..+.  -...-+.|++--..
T Consensus      1171 VlqtDGqlrtG~DV~iAallGAeefgf~T~plIalGCiMmRkCH~NtCpVGiAtQdp~LRakF~--G~PehvVNff~yva 1248 (2142)
T KOG0399|consen 1171 VLQTDGQLRTGRDVAIAALLGAEEFGFSTAPLIALGCIMMRKCHLNTCPVGIATQDPELRAKFP--GQPEHVVNFFFYVA 1248 (2142)
T ss_pred             EEEecCccccchHHHHHHHhCchhhcccccHHHHHhhHHHHHhccCCCCcccccCCHHHHhhCC--CCcHHHHHHHHHHH
Confidence            36789999999999999999999999999999999883         67888888888777664  23345678888888


Q ss_pred             HHHHHHHHHcCcCCCCCC
Q psy7649          73 LELNNLVPTLLLGSIQPP   90 (100)
Q Consensus        73 ~e~~e~~~~lG~~s~~~~   90 (100)
                      +|++.+|..+|++++.++
T Consensus      1249 EEvR~imakLGfrtldem 1266 (2142)
T KOG0399|consen 1249 EEVRGIMAKLGFRTLDEM 1266 (2142)
T ss_pred             HHHHHHHHHhCcchHHHH
Confidence            999999999999877644

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=98.25  E-value=8.2e-07  Score=68.71  Aligned_cols=48  Identities=25%  Similarity=0.273  Sum_probs=41.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i   48 (100)
                      +|||++|||.++.|+.+++++|||.|.+|+.|+..-.+.-++..++.+
T Consensus       162 iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~t~Es~~~~~~k~~l  209 (307)
T TIGR03151       162 IPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLCAKECNVHPNYKEKV  209 (307)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEeecchHHhcccccCCCHHHHHHH
Confidence            689999999999999999999999999999999887765555555554

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>KOG2550|consensus

Probab=98.08  E-value=1.1e-06  Score=71.36  Aligned_cols=33  Identities=39%  Similarity=0.561  Sum_probs=30.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+|+||||++..||+|||+|||+.|+||..+-
T Consensus       355 vpviADGGiq~~Ghi~KAl~lGAstVMmG~lLA  387 (503)
T KOG2550|consen  355 VPCIADGGIQNVGHVVKALGLGASTVMMGGLLA  387 (503)
T ss_pred             CceeecCCcCccchhHhhhhcCchhheecceee
Confidence            689999999999999999999999999997553

>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD

Probab=98.07  E-value=2.6e-06  Score=68.90  Aligned_cols=48  Identities=23%  Similarity=0.336  Sum_probs=41.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i   48 (100)
                      +||++.|||-||.+++.|++||||+|.+|+.|+-.-.+.-++.+++.+
T Consensus       220 ipViAAGGI~tg~~vaAA~alGAd~V~~GT~flat~Ea~~s~~~K~~L  267 (418)
T cd04742         220 IRVGAAGGIGTPEAAAAAFALGADFIVTGSINQCTVEAGTSDAVKDLL  267 (418)
T ss_pred             ceEEEECCCCCHHHHHHHHHcCCcEEeeccHHHhCccccCCHHHHHHH
Confidence            589999999999999999999999999999999876665556666665

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR02814 pfaD_fam PfaD family protein

Probab=98.05  E-value=3.1e-06  Score=68.89  Aligned_cols=48  Identities=23%  Similarity=0.335  Sum_probs=42.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i   48 (100)
                      |||++.|||-||.+++.|++||||.|.+|+.|+-.-.+.-++.+++.+
T Consensus       225 VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~flat~Esgas~~~K~~L  272 (444)
T TIGR02814       225 IRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQCTVEAGTSDNVKKLL  272 (444)
T ss_pred             ceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHHhCccccCCHHHHHHH
Confidence            589999999999999999999999999999999877766667777766

The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.

>PRK05286 dihydroorotate dehydrogenase 2; Reviewed

Probab=97.93  E-value=3.1e-05  Score=60.65  Aligned_cols=34  Identities=24%  Similarity=0.396  Sum_probs=32.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||+++|||+|+.|+.+.+..|||+|.+||++++
T Consensus       290 ipIig~GGI~s~eda~e~l~aGAd~V~v~~~~~~  323 (344)
T PRK05286        290 LPIIGVGGIDSAEDAYEKIRAGASLVQIYSGLIY  323 (344)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCHHHHHHHHHH
Confidence            5899999999999999999999999999999874

>PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway

Probab=97.91  E-value=1.3e-05  Score=60.98  Aligned_cols=34  Identities=29%  Similarity=0.387  Sum_probs=30.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||++|||.|+.|+.+.+..||++|.+++.+++
T Consensus       245 i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~  278 (295)
T PF01180_consen  245 IPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIY  278 (295)
T ss_dssp             SEEEEESS--SHHHHHHHHHHTESEEEESHHHHH
T ss_pred             eEEEEeCCcCCHHHHHHHHHhCCCHheechhhhh
Confidence            5899999999999999999999999999998876

DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A ....

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=97.90  E-value=1.1e-05  Score=60.75  Aligned_cols=34  Identities=35%  Similarity=0.558  Sum_probs=32.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||++.|||+|+.|+.++++.|||+|++||+++.
T Consensus       244 ipiia~GGI~~~~da~~~l~~GAd~V~vg~a~~~  277 (289)
T cd02810         244 IPIIGVGGIDSGEDVLEMLMAGASAVQVATALMW  277 (289)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCccHheEcHHHHh
Confidence            5899999999999999999999999999999884

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=97.84  E-value=1.1e-05  Score=58.76  Aligned_cols=49  Identities=29%  Similarity=0.310  Sum_probs=43.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQ   49 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~   49 (100)
                      +|+++.|||+++.|+.+++..|||.|.+|+.++....+.+...+.+.+.
T Consensus       157 ~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~~~~e~~~~~~~~~~~~  205 (236)
T cd04730         157 IPVIAAGGIADGRGIAAALALGADGVQMGTRFLATEESGASPAYKQALL  205 (236)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCcEEEEchhhhcCcccCCCHHHHHHHH
Confidence            5899999999999999999999999999999999888777777766654

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated

Probab=97.80  E-value=3.1e-05  Score=61.78  Aligned_cols=63  Identities=21%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||++|||.|+.|+++.+..|||+|.+++.+++    .|++    .+..+.++|...|.-.|..++.++.
T Consensus       254 ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~----~gp~----ii~~I~~~L~~~l~~~g~~si~e~i  316 (420)
T PRK08318        254 LPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ----YGFR----IVEDMISGLSHYMDEKGFASLEDMV  316 (420)
T ss_pred             CCEEeecCcCCHHHHHHHHHhCCChheeeeeecc----CCch----hHHHHHHHHHHHHHHcCcchHHHHh
Confidence            5899999999999999999999999999998874    3543    2334556666666666666666554

>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2

Probab=97.79  E-value=2.5e-05  Score=60.69  Aligned_cols=34  Identities=26%  Similarity=0.431  Sum_probs=32.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||+++|||+|+.|+.+.+..|||+|.+||++++
T Consensus       281 ipIi~~GGI~t~~da~e~l~aGAd~V~vg~~~~~  314 (327)
T cd04738         281 IPIIGVGGISSGEDAYEKIRAGASLVQLYTGLVY  314 (327)
T ss_pred             CcEEEECCCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence            5899999999999999999999999999999974

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=97.79  E-value=3.1e-05  Score=62.02  Aligned_cols=63  Identities=19%  Similarity=0.172  Sum_probs=51.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +||+..|||.|+.|+++.+.+||++|.+++.+++    .|+.    .++.+.++|...|--.|..++.++.
T Consensus       271 ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~----~Gp~----vi~~i~~~L~~~m~~~G~~si~e~~  333 (385)
T PLN02495        271 RSLSGIGGVETGGDAAEFILLGADTVQVCTGVMM----HGYP----LVKNLCAELQDFMKKHNFSSIEDFR  333 (385)
T ss_pred             CcEEEECCCCCHHHHHHHHHhCCCceeEeeeeee----cCcH----HHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            5799999999999999999999999999998764    4654    3445667777777788888887765

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=97.78  E-value=1.1e-05  Score=61.82  Aligned_cols=34  Identities=29%  Similarity=0.221  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||++|||.|+.|+.+.+..|||+|.++|.+++
T Consensus       253 ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~  286 (299)
T cd02940         253 LPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN  286 (299)
T ss_pred             CcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence            5899999999999999999999999999998764

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=97.75  E-value=8e-05  Score=55.65  Aligned_cols=52  Identities=25%  Similarity=0.284  Sum_probs=41.6

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH   53 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~   53 (100)
                      +++++|||+|+.|+.+++..|||.+.+|+.++..+..++.+...+.++.++.
T Consensus       187 ~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~~~~~~~  238 (244)
T PRK13125        187 YLVVGFGLDSPEDARDALSAGADGVVVGTAFIEELEKNGVESALNLLKKIRG  238 (244)
T ss_pred             CEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            6889999999999999999999999999999877654444555555555544

>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain

Probab=97.72  E-value=5.5e-05  Score=58.06  Aligned_cols=34  Identities=29%  Similarity=0.286  Sum_probs=32.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||++|||.|+.|+++.+..|||+|.+++.+++
T Consensus       244 ipIig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~  277 (294)
T cd04741         244 IQIIGVGGVLDGRGAFRMRLAGASAVQVGTALGK  277 (294)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence            5899999999999999999999999999998875

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=97.66  E-value=5.6e-05  Score=55.20  Aligned_cols=34  Identities=35%  Similarity=0.364  Sum_probs=31.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||+++.|+.+++++|||.|.+|+.++.
T Consensus       174 iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~  207 (221)
T PRK01130        174 CPVIAEGRINTPEQAKKALELGAHAVVVGGAITR  207 (221)
T ss_pred             CCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcC
Confidence            5899999999999999999999999999988753

>PRK00208 thiG thiazole synthase; Reviewed

Probab=97.62  E-value=5.9e-05  Score=57.49  Aligned_cols=44  Identities=30%  Similarity=0.374  Sum_probs=35.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARV   47 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~   47 (100)
                      +|||++|||.++.|+.+|+.+|||.|.+++.+..+   ..+....+.
T Consensus       176 vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka---~dP~~ma~a  219 (250)
T PRK00208        176 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVA---GDPVAMARA  219 (250)
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCC---CCHHHHHHH
Confidence            58999999999999999999999999999988632   345444443

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=97.61  E-value=0.00015  Score=54.99  Aligned_cols=38  Identities=32%  Similarity=0.273  Sum_probs=35.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhc
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAH   38 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~   38 (100)
                      .||+++|||+|+.|+-++...|||.|.+|+.+...+..
T Consensus       199 ~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~~  236 (256)
T TIGR00262       199 KPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEE  236 (256)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHh
Confidence            37899999999999999999999999999999988764

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=97.61  E-value=3.9e-05  Score=58.45  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=31.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||++|||.++.|+.+|+.+|||.|.+++.+..
T Consensus       176 vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~  209 (248)
T cd04728         176 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAK  209 (248)
T ss_pred             CcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcC
Confidence            5899999999999999999999999999998863

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2

Probab=97.58  E-value=8.5e-05  Score=58.21  Aligned_cols=34  Identities=21%  Similarity=0.342  Sum_probs=32.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||+.|||.|+.|+.+.+..|||+|.+++.+++
T Consensus       289 ipiig~GGI~~~~da~e~l~aGA~~Vqv~ta~~~  322 (335)
T TIGR01036       289 LPIIGVGGISSAQDALEKIRAGASLLQIYSGFIY  322 (335)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence            5899999999999999999999999999999874

The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=97.55  E-value=6.1e-05  Score=54.65  Aligned_cols=34  Identities=29%  Similarity=0.420  Sum_probs=31.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~   34 (100)
                      +||+++|||+++.|+.+++.. |||.|++||+++.
T Consensus       184 ipvi~~Ggi~~~~d~~~~l~~~gad~V~igr~~l~  218 (231)
T cd02801         184 IPVIANGDIFSLEDALRCLEQTGVDGVMIGRGALG  218 (231)
T ss_pred             CeEEEeCCCCCHHHHHHHHHhcCCCEEEEcHHhHh
Confidence            589999999999999999999 8999999998873

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism]

Probab=97.50  E-value=0.00016  Score=56.59  Aligned_cols=63  Identities=22%  Similarity=0.308  Sum_probs=49.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||..|||.|+.|+++-+..||++|-+++.+++    .|+.=    ++.+.++|...|--.|..++.++.
T Consensus       242 ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~----~Gp~i----~~~I~~~l~~~l~~~g~~si~d~i  304 (310)
T COG0167         242 IPIIGVGGIETGEDALEFILAGASAVQVGTALIY----KGPGI----VKEIIKGLARWLEEKGFESIQDII  304 (310)
T ss_pred             CcEEEecCcCcHHHHHHHHHcCCchheeeeeeee----eCchH----HHHHHHHHHHHHHHcCCCCHHHHh
Confidence            6899999999999999999999999999998774    46533    334456666677777777777664

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=97.39  E-value=0.0001  Score=53.82  Aligned_cols=34  Identities=35%  Similarity=0.414  Sum_probs=31.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||+++.|+.+++++|||.|++|+.+..
T Consensus       178 ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~  211 (219)
T cd04729         178 IPVIAEGRINSPEQAAKALELGADAVVVGSAITR  211 (219)
T ss_pred             CCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence            5899999999999999999999999999998764

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=97.36  E-value=0.00012  Score=55.10  Aligned_cols=34  Identities=24%  Similarity=0.173  Sum_probs=32.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||+.|||+|+.|+.+.+..|||.|++||..+.
T Consensus       192 ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~  225 (231)
T TIGR00736       192 KIIIGNNSIDDIESAKEMLKAGADFVSVARAILK  225 (231)
T ss_pred             CcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhcc
Confidence            6899999999999999999999999999998774

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS)

Probab=97.32  E-value=0.00018  Score=56.51  Aligned_cols=38  Identities=24%  Similarity=0.298  Sum_probs=35.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCc--------chHhhhHHHHHHHhc
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGA--------KYVFVGRAALWGLAH   38 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGA--------d~v~ig~~~L~al~~   38 (100)
                      +|||+.|||.++..++.+++|||        +.|.||+.||.+-.+
T Consensus       166 iPViAAGGI~dgr~~aaalaLGA~~~~~Ga~~GV~mGTrFl~t~Es  211 (320)
T cd04743         166 IHLLFAGGIHDERSAAMVSALAAPLAERGAKVGVLMGTAYLFTEEA  211 (320)
T ss_pred             ccEEEEcCCCCHHHHHHHHHcCCcccccccccEEEEccHHhcchhh
Confidence            68999999999999999999999        799999999987555

NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=97.31  E-value=0.00018  Score=53.35  Aligned_cols=33  Identities=30%  Similarity=0.290  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|++++|||+|..|+.+...+|||.|.+|+.+.
T Consensus       185 ~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~  217 (221)
T TIGR00734       185 HPVMLGGGISGVEDLELLKEMGVSAVLVATAVH  217 (221)
T ss_pred             CCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhh
Confidence            589999999999999999999999999999875

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=97.30  E-value=0.00017  Score=52.64  Aligned_cols=80  Identities=20%  Similarity=0.162  Sum_probs=50.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHh-------cccccHHHhhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVA-------DKVHNAYSIFFL   73 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l-------~g~~n~~~l~~~   73 (100)
                      +|++++|||++-.|+-+++.+||+.|.+|+.++.     .++-+.+..+.+.+.+-..+-.       .|..+.......
T Consensus        75 ~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~l~-----~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~  149 (233)
T PRK00748         75 IPVQVGGGIRSLETVEALLDAGVSRVIIGTAAVK-----NPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAE  149 (233)
T ss_pred             CCEEEcCCcCCHHHHHHHHHcCCCEEEECchHHh-----CHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHH
Confidence            5899999999999999999999999999998874     3333444444432222111100       111122233445


Q ss_pred             HHHHHHHHcCcC
Q psy7649          74 ELNNLVPTLLLG   85 (100)
Q Consensus        74 e~~e~~~~lG~~   85 (100)
                      |+.+.+..+|.+
T Consensus       150 e~~~~~~~~g~~  161 (233)
T PRK00748        150 DLAKRFEDAGVK  161 (233)
T ss_pred             HHHHHHHhcCCC
Confidence            666777776665

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.28  E-value=0.00023  Score=52.60  Aligned_cols=35  Identities=20%  Similarity=0.270  Sum_probs=32.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~a   35 (100)
                      +|++++|||+++.|+.+++.. |||.|.+|+++...
T Consensus       194 ~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~  229 (243)
T cd04731         194 IPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFG  229 (243)
T ss_pred             CCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcC
Confidence            589999999999999999998 99999999988753

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=97.27  E-value=0.00066  Score=51.66  Aligned_cols=52  Identities=19%  Similarity=0.150  Sum_probs=41.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhc--cCHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAH--SGSNGAARVLQSLVH   53 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~--~g~~gv~~~i~~l~~   53 (100)
                      +|+++.+||+++.|+.++... ||.|.+|+.++..+..  .+.+.+.++++.++.
T Consensus       201 ~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~~~~~~~~~~~~~~~~~~l~~  254 (258)
T PRK13111        201 LPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKIIEENPEALEALAAFVKELKA  254 (258)
T ss_pred             CcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            589999999999999999986 9999999999998775  234455555555443

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=97.27  E-value=0.0002  Score=52.35  Aligned_cols=34  Identities=29%  Similarity=0.336  Sum_probs=32.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||++..|+.++...|||.|.+|+.++.
T Consensus       190 ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~  223 (230)
T TIGR00007       190 VPVIASGGVSSIDDLIALKKLGVYGVIVGKALYE  223 (230)
T ss_pred             CCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence            5899999999999999999999999999998875

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>cd04732 HisA HisA

Probab=97.22  E-value=0.00026  Score=51.65  Aligned_cols=34  Identities=29%  Similarity=0.336  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||++..|+.+++..|||.|.+|+.++.
T Consensus       191 ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~  224 (234)
T cd04732         191 IPVIASGGVSSLDDIKALKELGVAGVIVGKALYE  224 (234)
T ss_pred             CCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHc
Confidence            5899999999999999999999999999998864

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=97.20  E-value=0.0004  Score=51.77  Aligned_cols=79  Identities=23%  Similarity=0.180  Sum_probs=52.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhH-------HHHhcccccHHHhhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILP-------EAVADKVHNAYSIFFL   73 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~-------~m~l~g~~n~~~l~~~   73 (100)
                      +|+.++|||||..|+-+.+.+||+-|.+|+..+.     .++=+.+..+.+.+++..       .....|..+ ......
T Consensus        76 ~pv~vgGGirs~edv~~~l~~Ga~kvviGs~~l~-----~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~-~~~~~~  149 (241)
T PRK14024         76 VKVELSGGIRDDESLEAALATGCARVNIGTAALE-----NPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTR-DGGDLW  149 (241)
T ss_pred             CCEEEcCCCCCHHHHHHHHHCCCCEEEECchHhC-----CHHHHHHHHHHhhhhEEEEEEEeccEeccCCeee-cCccHH
Confidence            5899999999999999999999999999987763     455555555555444311       111123322 223335


Q ss_pred             HHHHHHHHcCcC
Q psy7649          74 ELNNLVPTLLLG   85 (100)
Q Consensus        74 e~~e~~~~lG~~   85 (100)
                      ++...+..+|.+
T Consensus       150 ~~~~~l~~~G~~  161 (241)
T PRK14024        150 EVLERLDSAGCS  161 (241)
T ss_pred             HHHHHHHhcCCC
Confidence            666667777766

>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family

Probab=97.14  E-value=0.00031  Score=54.13  Aligned_cols=34  Identities=29%  Similarity=0.326  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHH-HhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAI-GLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAl-ALGAd~v~ig~~~L~   34 (100)
                      +||++.|||.++.|+.+++ ..|||.|++||+++.
T Consensus       193 ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~  227 (319)
T TIGR00737       193 IPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALG  227 (319)
T ss_pred             CcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhh
Confidence            5899999999999999999 678999999999884

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=97.13  E-value=0.0015  Score=49.93  Aligned_cols=56  Identities=16%  Similarity=0.145  Sum_probs=41.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL   56 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~   56 (100)
                      .|+.+++||+++.|+.+....|||.|.+|+.++..+.....+...+.+..+.++++
T Consensus       203 ~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~~~~~~~~~~~~~~~~~~~~  258 (263)
T CHL00200        203 KPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLGSSPEKGLDQLSEFCKVAK  258 (263)
T ss_pred             CCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHHhcChhhHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999988764332222333444444443

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=97.13  E-value=0.00015  Score=54.69  Aligned_cols=35  Identities=26%  Similarity=0.338  Sum_probs=32.7

Q ss_pred             CeEEEcCCCCChHHHHHHH-HhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAI-GLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAl-ALGAd~v~ig~~~L~a   35 (100)
                      +|||++|||++..|+.+++ ..|+|.|.+|++|.+.
T Consensus       197 ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~~  232 (258)
T PRK01033        197 IPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVFK  232 (258)
T ss_pred             CCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeeeC
Confidence            6899999999999999999 8999999999998873

>CHL00162 thiG thiamin biosynthesis protein G; Validated

Probab=97.10  E-value=0.00017  Score=55.39  Aligned_cols=34  Identities=29%  Similarity=0.403  Sum_probs=31.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||++|+||.++.|+.+|+.||||.|++.+.+..
T Consensus       190 vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIak  223 (267)
T CHL00162        190 IPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQ  223 (267)
T ss_pred             CcEEEeCCcCCHHHHHHHHHcCCCEEeecceeec
Confidence            5899999999999999999999999999988774

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=97.09  E-value=0.00029  Score=53.56  Aligned_cols=33  Identities=36%  Similarity=0.478  Sum_probs=26.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|||+|+||.++.|++.|+.||||+|.+-+.+-
T Consensus       176 vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA  208 (247)
T PF05690_consen  176 VPVIVDAGIGTPSDAAQAMELGADAVLVNTAIA  208 (247)
T ss_dssp             SSBEEES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred             CcEEEeCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence            689999999999999999999999999988774

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=97.08  E-value=0.00041  Score=50.65  Aligned_cols=35  Identities=37%  Similarity=0.493  Sum_probs=32.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~a   35 (100)
                      +|++++|||+|..|+.+.+..| ||.|.+|+.++..
T Consensus       191 ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~  226 (233)
T PRK00748        191 IPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG  226 (233)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence            5899999999999999999999 9999999998753

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=97.08  E-value=0.00041  Score=52.00  Aligned_cols=34  Identities=32%  Similarity=0.372  Sum_probs=31.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||+++||||+..|+.+++.+||+.|.+|+.++.
T Consensus        75 ~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~~~~  108 (254)
T TIGR00735        75 IPLTVGGGIKSIEDVDKLLRAGADKVSINTAAVK  108 (254)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence            5899999999999999999999999999998874

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=97.08  E-value=0.00066  Score=53.27  Aligned_cols=34  Identities=29%  Similarity=0.431  Sum_probs=32.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||++.|||+++.++.++++-|||+|++||+++.
T Consensus       285 iPVi~~Ggi~t~e~ae~~l~~gaD~V~~gR~lia  318 (353)
T cd04735         285 LPLIAVGSINTPDDALEALETGADLVAIGRGLLV  318 (353)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCChHHHhHHHHh
Confidence            5899999999999999999999999999999984

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=97.05  E-value=0.00045  Score=51.32  Aligned_cols=34  Identities=29%  Similarity=0.237  Sum_probs=31.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||+|..|+.+.+.+||+.|.+|+.+..
T Consensus       190 ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~  223 (233)
T cd04723         190 IPVIAAGGVRSVEDLELLKKLGASGALVASALHD  223 (233)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHc
Confidence            5899999999999999999999999999998754

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional

Probab=97.04  E-value=0.00021  Score=56.29  Aligned_cols=33  Identities=27%  Similarity=0.409  Sum_probs=31.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +||++|+||.++.|+.+|+.||||.|.+.+.+.
T Consensus       250 vpVivdAGIg~~sda~~AmelGadgVL~nSaIa  282 (326)
T PRK11840        250 VPVLVDAGVGTASDAAVAMELGCDGVLMNTAIA  282 (326)
T ss_pred             CcEEEeCCCCCHHHHHHHHHcCCCEEEEcceec
Confidence            689999999999999999999999999998775

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=97.02  E-value=0.00048  Score=51.35  Aligned_cols=35  Identities=29%  Similarity=0.346  Sum_probs=31.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHh---CcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL---GAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL---GAd~v~ig~~~L~a   35 (100)
                      +||+++|||+|..|+.++..+   |+|.|.+|+.++..
T Consensus       191 ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g  228 (241)
T PRK14024        191 APVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAG  228 (241)
T ss_pred             CCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcC
Confidence            689999999999999998765   99999999988753

>cd02911 arch_FMN Archeal FMN-binding domain

Probab=97.00  E-value=0.00033  Score=52.36  Aligned_cols=31  Identities=19%  Similarity=0.178  Sum_probs=29.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRA   31 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~   31 (100)
                      +|||+.|||.|+.|+.+.+..|||.|++||+
T Consensus       192 ipVIgnGgI~s~eda~~~l~~GaD~VmiGR~  222 (233)
T cd02911         192 LFIIGNNSVTTIESAKEMFSYGADMVSVARA  222 (233)
T ss_pred             CEEEEECCcCCHHHHHHHHHcCCCEEEEcCC
Confidence            6899999999999999999999999999997

This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=97.00  E-value=0.00046  Score=51.41  Aligned_cols=34  Identities=29%  Similarity=0.368  Sum_probs=31.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+|++|||++..|+.++..+|++.|.+|+.+..
T Consensus       183 ~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~  216 (228)
T PRK04128        183 EEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYE  216 (228)
T ss_pred             CCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhc
Confidence            5899999999999999999999999999988743

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.99  E-value=0.00056  Score=51.09  Aligned_cols=34  Identities=29%  Similarity=0.448  Sum_probs=31.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||++..|+.+++.+|++.|.+|+.+..
T Consensus       193 ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~  226 (234)
T PRK13587        193 IPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ  226 (234)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence            5899999999999999999999999999988764

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=96.98  E-value=0.0006  Score=50.26  Aligned_cols=34  Identities=35%  Similarity=0.409  Sum_probs=27.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||+-|+|.+|.++.+|+.+||++|.+|+.+-.
T Consensus       145 ~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr  178 (192)
T PF04131_consen  145 VPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR  178 (192)
T ss_dssp             SEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH-
T ss_pred             CcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC
Confidence            5899999999999999999999999999987754

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK11815 tRNA-dihydrouridine synthase A; Provisional

Probab=96.97  E-value=0.00058  Score=53.35  Aligned_cols=33  Identities=24%  Similarity=0.424  Sum_probs=30.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||++|||+|+.|+.++++ |||.|++||+++.
T Consensus       206 iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~  238 (333)
T PRK11815        206 LTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYH  238 (333)
T ss_pred             CeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHh
Confidence            68999999999999999998 8999999999874

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=96.97  E-value=0.00059  Score=50.90  Aligned_cols=34  Identities=29%  Similarity=0.378  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||+|..|+.+++..||+.|.+|+.++.
T Consensus        75 ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~~l~  108 (253)
T PRK02083         75 IPLTVGGGIRSVEDARRLLRAGADKVSINSAAVA  108 (253)
T ss_pred             CCEEeeCCCCCHHHHHHHHHcCCCEEEEChhHhh
Confidence            5899999999999999999999999999998874

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=96.93  E-value=0.00067  Score=49.30  Aligned_cols=34  Identities=24%  Similarity=0.343  Sum_probs=31.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||.++.|+.+.+.+|||.|.+|+.++.
T Consensus       173 ~pvia~gGI~s~edi~~~~~~Ga~gvivGsai~~  206 (217)
T cd00331         173 VILVSESGISTPEDVKRLAEAGADAVLIGESLMR  206 (217)
T ss_pred             CEEEEEcCCCCHHHHHHHHHcCCCEEEECHHHcC
Confidence            4899999999999999999999999999998874

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=96.92  E-value=0.0012  Score=48.67  Aligned_cols=33  Identities=30%  Similarity=0.414  Sum_probs=31.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|++++|||++..|+.+.+..||+.|.+|+.++
T Consensus        72 ~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~~~  104 (243)
T cd04731          72 IPLTVGGGIRSLEDARRLLRAGADKVSINSAAV  104 (243)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCceEEECchhh
Confidence            589999999999999999999999999998777

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>PRK10415 tRNA-dihydrouridine synthase B; Provisional

Probab=96.91  E-value=0.00066  Score=52.80  Aligned_cols=33  Identities=27%  Similarity=0.380  Sum_probs=31.0

Q ss_pred             CeEEEcCCCCChHHHHHHHH-hCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIG-LGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlA-LGAd~v~ig~~~L   33 (100)
                      +|||++|||+|+.|+.+++. .|||.|++||.++
T Consensus       195 iPVI~nGgI~s~~da~~~l~~~gadgVmiGR~~l  228 (321)
T PRK10415        195 IPVIANGDITDPLKARAVLDYTGADALMIGRAAQ  228 (321)
T ss_pred             CcEEEeCCCCCHHHHHHHHhccCCCEEEEChHhh
Confidence            68999999999999999997 6999999999887

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.90  E-value=0.00073  Score=49.70  Aligned_cols=34  Identities=29%  Similarity=0.266  Sum_probs=31.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||++..|+.+...+||+.|.+|+.++.
T Consensus       194 iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~  227 (241)
T PRK13585        194 IPVIASGGVTTLDDLRALKEAGAAGVVVGSALYK  227 (241)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhc
Confidence            5899999999999999999999999999998864

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=96.90  E-value=0.00081  Score=51.46  Aligned_cols=34  Identities=32%  Similarity=0.294  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~   34 (100)
                      +||++.|||+++.|+.+++.. |||+|++||+++.
T Consensus       282 iPVi~~Ggi~t~~~a~~~l~~g~aD~V~igR~~la  316 (327)
T cd02803         282 IPVIAVGGIRDPEVAEEILAEGKADLVALGRALLA  316 (327)
T ss_pred             CCEEEeCCCCCHHHHHHHHHCCCCCeeeecHHHHh
Confidence            589999999999999999999 7999999999983

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=96.90  E-value=0.00079  Score=50.45  Aligned_cols=34  Identities=18%  Similarity=0.280  Sum_probs=31.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~   34 (100)
                      +||+++|||+++.|+.+++..| +|.|.+|+.+..
T Consensus       200 ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~  234 (254)
T TIGR00735       200 IPVIASGGAGKPEHFYEAFTKGKADAALAASVFHY  234 (254)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhC
Confidence            5899999999999999999999 999999988753

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=96.89  E-value=0.00065  Score=49.84  Aligned_cols=32  Identities=25%  Similarity=0.215  Sum_probs=29.5

Q ss_pred             CeEEEcCCCCChHHHHH-HHHhCcchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFK-AIGLGAKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~K-AlALGAd~v~ig~~~   32 (100)
                      +||+++|||++..|+.+ ....|||.|.+|++|
T Consensus       198 ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~  230 (232)
T TIGR03572       198 IPVIALGGAGSLDDLVEVALEAGASAVAAASLF  230 (232)
T ss_pred             CCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence            58999999999999999 667999999999876

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=96.86  E-value=0.0021  Score=48.04  Aligned_cols=53  Identities=21%  Similarity=0.224  Sum_probs=40.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHK   54 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~e   54 (100)
                      +||.++|||+++.++.+.... ||.+.+|+.+...+...+.+...+.++.+.+.
T Consensus       188 ~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~~~~~~~~~~~~~~~~~~~~~  240 (242)
T cd04724         188 LPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVKIIEEGGEEEALEALKELAES  240 (242)
T ss_pred             CcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHHHHHhccchhHHHHHHHHHHH
Confidence            489999999999999999999 99999999999887654333333444444433

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PLN02591 tryptophan synthase

Probab=96.85  E-value=0.0032  Score=47.85  Aligned_cols=55  Identities=24%  Similarity=0.281  Sum_probs=41.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc-CHHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS-GSNGAARVLQSLVHKI   55 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~-g~~gv~~~i~~l~~el   55 (100)
                      +|+++.-||+++.|+.+.+..|||.|.+|+.++..+... .++...+.+..+.+++
T Consensus       190 ~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~~~~~~~~~~~~~~~~~~~l  245 (250)
T PLN02591        190 KPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALGEAKSPEEGLKRLEKLAKSL  245 (250)
T ss_pred             CceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhhhccChhHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999877542 2323333344444444

>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P)

Probab=96.80  E-value=0.00058  Score=51.50  Aligned_cols=33  Identities=27%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +++|+.|||||+.++.+++..|||.|.+|+.|=
T Consensus       183 ~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~ie  215 (230)
T PF01884_consen  183 IPLIVGGGIRSPEQAREMAEAGADTIVVGNAIE  215 (230)
T ss_dssp             SEEEEESS--SHHHHHHHHCTTSSEEEESCHHH
T ss_pred             ccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEE
Confidence            489999999999999999999999999998774

This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.

>TIGR00742 yjbN tRNA dihydrouridine synthase A

Probab=96.78  E-value=0.00095  Score=52.10  Aligned_cols=33  Identities=24%  Similarity=0.451  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||+.|||+|..|+.+.+. |||.|++||.++.
T Consensus       196 ipVi~NGdI~s~~da~~~l~-g~dgVMigRgal~  228 (318)
T TIGR00742       196 LTIEINGGIKNSEQIKQHLS-HVDGVMVGREAYE  228 (318)
T ss_pred             CcEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence            68999999999999999997 9999999998875

Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.

>KOG1436|consensus

Probab=96.70  E-value=0.0054  Score=48.91  Aligned_cols=63  Identities=17%  Similarity=0.307  Sum_probs=51.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      ||||-.|||.||.|..+=+..||++|-+.+.+-+    +|+    ..++..+.|+...|...|-.++.+..
T Consensus       332 IpiIG~GGV~SG~DA~EkiraGASlvQlyTal~y----eGp----~i~~kIk~El~~ll~~kG~t~v~d~i  394 (398)
T KOG1436|consen  332 IPIIGCGGVSSGKDAYEKIRAGASLVQLYTALVY----EGP----AIIEKIKRELSALLKAKGFTSVDDAI  394 (398)
T ss_pred             CceEeecCccccHhHHHHHhcCchHHHHHHHHhh----cCc----hhHHHHHHHHHHHHHhcCCCcHHHhc
Confidence            7999999999999999999999999999887654    454    23456777888888888887776653

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=96.65  E-value=0.0015  Score=48.73  Aligned_cols=34  Identities=18%  Similarity=0.181  Sum_probs=31.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~   34 (100)
                      +|++++|||++..|+.+++.. |++.|.+|+.+..
T Consensus       198 ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~  232 (253)
T PRK02083        198 VPVIASGGAGNLEHFVEAFTEGGADAALAASIFHF  232 (253)
T ss_pred             CCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHc
Confidence            589999999999999999975 9999999988764

>cd04732 HisA HisA

Probab=96.64  E-value=0.0013  Score=47.96  Aligned_cols=33  Identities=36%  Similarity=0.595  Sum_probs=31.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|++++|||++..|+-+.+..|||.|.+|+..+
T Consensus        74 ~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~l  106 (234)
T cd04732          74 IPVQVGGGIRSLEDIERLLDLGVSRVIIGTAAV  106 (234)
T ss_pred             CCEEEeCCcCCHHHHHHHHHcCCCEEEECchHH
Confidence            589999999999999999999999999999876

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=96.55  E-value=0.0019  Score=51.33  Aligned_cols=33  Identities=27%  Similarity=0.351  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|||+++.++-++|+-| ||+|++||+++
T Consensus       306 ~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~l  339 (382)
T cd02931         306 VPVIMAGRMEDPELASEAINEGIADMISLGRPLL  339 (382)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhH
Confidence            5899999999999999999987 99999999988

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.54  E-value=0.0014  Score=48.85  Aligned_cols=33  Identities=27%  Similarity=0.518  Sum_probs=30.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|++++|||||-.|+-+.+.+||+-|.+|+..+
T Consensus        74 ~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~  106 (228)
T PRK04128         74 LKVQVGGGLRTYESIKDAYEIGVENVIIGTKAF  106 (228)
T ss_pred             CCEEEcCCCCCHHHHHHHHHCCCCEEEECchhc
Confidence            589999999999999999999999999997654

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=96.53  E-value=0.002  Score=47.80  Aligned_cols=33  Identities=30%  Similarity=0.338  Sum_probs=29.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|++++|||++..|+.++...|++.|.+|+.+.
T Consensus       192 ~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~  224 (229)
T PF00977_consen  192 IPVIASGGVRSLEDLRELKKAGIDGVIVGSALH  224 (229)
T ss_dssp             SEEEEESS--SHHHHHHHHHTTECEEEESHHHH
T ss_pred             CCEEEecCCCCHHHHHHHHHCCCcEEEEehHhh
Confidence            589999999999999999999999999999874

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=96.51  E-value=0.0023  Score=50.17  Aligned_cols=33  Identities=30%  Similarity=0.416  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|+|+++.++-+++.-| ||+|++||+++
T Consensus       286 ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~l  319 (343)
T cd04734         286 LPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHI  319 (343)
T ss_pred             CCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhH
Confidence            5899999999999999999987 99999999998

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=96.47  E-value=0.0035  Score=49.20  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|+|+++.++.++|+-| ||+|++||+++
T Consensus       276 ipVi~~G~i~~~~~a~~~l~~g~~D~V~~gR~~i  309 (337)
T PRK13523        276 IATGAVGLITSGAQAEEILQNNRADLIFIGRELL  309 (337)
T ss_pred             CcEEEeCCCCCHHHHHHHHHcCCCChHHhhHHHH
Confidence            5899999999999999999988 99999999998

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=96.46  E-value=0.0047  Score=48.17  Aligned_cols=34  Identities=35%  Similarity=0.451  Sum_probs=31.6

Q ss_pred             CeEE--EcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVY--LDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~li--asGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||+  +.|||.|+.|+.+++.+|||.|.+|+.+..
T Consensus       204 iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~k  239 (293)
T PRK04180        204 LPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFK  239 (293)
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhc
Confidence            5787  999999999999999999999999998874

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=96.44  E-value=0.0034  Score=44.81  Aligned_cols=32  Identities=25%  Similarity=0.210  Sum_probs=29.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +||+++||| +..++.++++.||+.|.+|+.+.
T Consensus       161 ~~v~a~GGI-~~~~i~~~~~~Ga~gv~~gs~i~  192 (212)
T PRK00043        161 IPIVAIGGI-TPENAPEVLEAGADGVAVVSAIT  192 (212)
T ss_pred             CCEEEECCc-CHHHHHHHHHcCCCEEEEeHHhh
Confidence            589999999 79999999999999999998865

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=96.39  E-value=0.0025  Score=50.79  Aligned_cols=33  Identities=30%  Similarity=0.383  Sum_probs=31.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +|+++.|+|+++..+-++++-| ||+|++||+||
T Consensus       289 ~pvi~~G~i~~~~~Ae~~l~~g~aDlVa~gR~~l  322 (363)
T COG1902         289 IPVIAVGGINDPEQAEEILASGRADLVAMGRPFL  322 (363)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCCEEEechhhh
Confidence            5899999999999999999998 99999999998

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=96.38  E-value=0.0029  Score=49.23  Aligned_cols=33  Identities=18%  Similarity=0.278  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||+++|+|.+..++.++++-| ||+|++||+++
T Consensus       293 iPVi~~G~i~t~~~a~~~l~~g~aD~V~lgR~~i  326 (338)
T cd04733         293 TPLMVTGGFRTRAAMEQALASGAVDGIGLARPLA  326 (338)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCCeeeeChHhh
Confidence            5899999999999999999998 89999999997

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=96.34  E-value=0.0039  Score=48.41  Aligned_cols=34  Identities=26%  Similarity=0.225  Sum_probs=32.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~   34 (100)
                      +||++.|+|.++.|+.+++.-| ||+|++||+++.
T Consensus       291 iPVi~~G~i~t~~~a~~~l~~g~aD~V~~gR~~i~  325 (336)
T cd02932         291 IPVIAVGLITDPEQAEAILESGRADLVALGRELLR  325 (336)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCCeehhhHHHHh
Confidence            5899999999999999999999 999999999983

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain

Probab=96.32  E-value=0.0033  Score=49.78  Aligned_cols=33  Identities=12%  Similarity=0.130  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|+|+++.++-+++.-| ||+|++||+++
T Consensus       290 ~pvi~~G~i~~~~~~~~~l~~g~~D~V~~gR~~l  323 (370)
T cd02929         290 KPVVGVGRFTSPDKMVEVVKSGILDLIGAARPSI  323 (370)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCCeeeechHhh
Confidence            5899999999999999999988 99999999998

TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.

>PRK07695 transcriptional regulator TenI; Provisional

Probab=96.24  E-value=0.0073  Score=43.48  Aligned_cols=33  Identities=18%  Similarity=0.171  Sum_probs=30.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.||| ++.++..++..||+.|.+++.+..
T Consensus       150 ipvia~GGI-~~~~~~~~~~~Ga~gvav~s~i~~  182 (201)
T PRK07695        150 IPVIAIGGI-TPENTRDVLAAGVSGIAVMSGIFS  182 (201)
T ss_pred             CCEEEEcCC-CHHHHHHHHHcCCCEEEEEHHHhc
Confidence            589999999 999999999999999999998874

>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.23  E-value=0.0065  Score=45.35  Aligned_cols=33  Identities=24%  Similarity=0.569  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+.++|||||-.|+-+.+.+||+-|.+|+..+
T Consensus        77 ~pi~vGGGIrs~e~v~~~l~~Ga~kvvigt~a~  109 (234)
T PRK13587         77 KDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGI  109 (234)
T ss_pred             CeEEEcCCcCCHHHHHHHHHCCCCEEEECchHh
Confidence            589999999999999999999999999998765

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.19  E-value=0.004  Score=45.77  Aligned_cols=33  Identities=39%  Similarity=0.609  Sum_probs=30.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|++++|||++..|+-+++.+|||.|.+|+..+
T Consensus        77 ~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~~  109 (241)
T PRK13585         77 VPVQLGGGIRSAEDAASLLDLGVDRVILGTAAV  109 (241)
T ss_pred             CcEEEcCCcCCHHHHHHHHHcCCCEEEEChHHh
Confidence            589999999999999999999999999998775

>cd02812 PcrB_like PcrB_like proteins

Probab=96.18  E-value=0.0036  Score=46.87  Aligned_cols=34  Identities=26%  Similarity=0.365  Sum_probs=31.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||||+.++-+++..|||.|.+|+.+..
T Consensus       176 ~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~  209 (219)
T cd02812         176 TPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEE  209 (219)
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhC
Confidence            4899999999999999999999999999987763

One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.

>PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed

Probab=96.13  E-value=0.0043  Score=46.77  Aligned_cols=32  Identities=25%  Similarity=0.369  Sum_probs=30.7

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      |+++.||||+..++-+++..|||.|.+|+.+.
T Consensus       186 pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~  217 (232)
T PRK04169        186 PLIYGGGIRSPEQARELMAAGADTIVVGNIIE  217 (232)
T ss_pred             cEEEECCCCCHHHHHHHHHhCCCEEEEChHHh
Confidence            89999999999999999999999999999886

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=96.13  E-value=0.0082  Score=46.73  Aligned_cols=34  Identities=32%  Similarity=0.442  Sum_probs=31.6

Q ss_pred             CeEE--EcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVY--LDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~li--asGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||+  +-|||.|+.|+.+++.+|||.|.+|+.+..
T Consensus       198 iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~k  233 (287)
T TIGR00343       198 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK  233 (287)
T ss_pred             CCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhc
Confidence            5787  999999999999999999999999998874

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=96.12  E-value=0.0039  Score=46.92  Aligned_cols=33  Identities=39%  Similarity=0.534  Sum_probs=30.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-----C-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-----G-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-----G-Ad~v~ig~~~L   33 (100)
                      +||++|||+++..|+.++..+     | ++.|.+|+.+.
T Consensus       189 ~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~  227 (241)
T PRK14114        189 VKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFL  227 (241)
T ss_pred             CCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHH
Confidence            589999999999999999998     6 99999998864

>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]

Probab=96.11  E-value=0.0048  Score=47.16  Aligned_cols=35  Identities=31%  Similarity=0.425  Sum_probs=31.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|||+|-||-++.|.+-|+-||+|+|.+-+++-.+
T Consensus       183 VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A  217 (262)
T COG2022         183 VPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARA  217 (262)
T ss_pred             CCEEEeCCCCChhHHHHHHhcccceeehhhHhhcc
Confidence            69999999999999999999999999998877543

>PRK10550 tRNA-dihydrouridine synthase C; Provisional

Probab=96.07  E-value=0.0043  Score=48.28  Aligned_cols=34  Identities=26%  Similarity=0.363  Sum_probs=31.0

Q ss_pred             CeEEEcCCCCChHHHHHHHH-hCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIG-LGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlA-LGAd~v~ig~~~L~   34 (100)
                      +||++.|+|.|+.|+.+.+. -|||.|++||.++.
T Consensus       195 iPVi~nGdI~t~~da~~~l~~~g~DgVmiGRg~l~  229 (312)
T PRK10550        195 IPVIANGEIWDWQSAQQCMAITGCDAVMIGRGALN  229 (312)
T ss_pred             CcEEEeCCcCCHHHHHHHHhccCCCEEEEcHHhHh
Confidence            68999999999999999995 68999999998774

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=96.03  E-value=0.011  Score=46.01  Aligned_cols=34  Identities=32%  Similarity=0.442  Sum_probs=31.5

Q ss_pred             CeEE--EcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVY--LDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~li--asGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||+  +.|||.|+.|+.+++.+||+.|.+|+.+..
T Consensus       195 iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~  230 (283)
T cd04727         195 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK  230 (283)
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhc
Confidence            5776  999999999999999999999999998874

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=96.03  E-value=0.012  Score=43.01  Aligned_cols=34  Identities=41%  Similarity=0.539  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||++..|+-+++..|||.|.+|+..+.
T Consensus        73 ~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~~l~  106 (230)
T TIGR00007        73 VPVQVGGGIRSLEDVEKLLDLGVDRVIIGTAAVE  106 (230)
T ss_pred             CCEEEeCCcCCHHHHHHHHHcCCCEEEEChHHhh
Confidence            4899999999999999999999999999877663

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes

Probab=96.02  E-value=0.0059  Score=45.23  Aligned_cols=33  Identities=33%  Similarity=0.525  Sum_probs=29.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+.++||||+..|+-+.+.+||+-|.+|+..+
T Consensus        74 ~~i~vgGGIrs~ed~~~ll~~Ga~~Vvigt~~~  106 (229)
T PF00977_consen   74 IPIQVGGGIRSIEDAERLLDAGADRVVIGTEAL  106 (229)
T ss_dssp             SEEEEESSE-SHHHHHHHHHTT-SEEEESHHHH
T ss_pred             ccEEEeCccCcHHHHHHHHHhCCCEEEeChHHh
Confidence            589999999999999999999999999999766

Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=96.01  E-value=0.0085  Score=46.92  Aligned_cols=33  Identities=21%  Similarity=0.173  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|+|+++.|+-+++.-| +|+|++||+++
T Consensus       277 iPVi~~G~i~~~~~a~~~i~~g~~D~V~~gR~~l  310 (353)
T cd02930         277 IPVIASNRINTPEVAERLLADGDADMVSMARPFL  310 (353)
T ss_pred             CCEEEcCCCCCHHHHHHHHHCCCCChhHhhHHHH
Confidence            5899999999999999999987 99999999998

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []

Probab=96.00  E-value=0.0051  Score=48.02  Aligned_cols=33  Identities=39%  Similarity=0.447  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|||+++..+.++++-| ||+|++||+++
T Consensus       292 ~pvi~~G~i~~~~~ae~~l~~g~~DlV~~gR~~l  325 (341)
T PF00724_consen  292 IPVIGVGGIRTPEQAEKALEEGKADLVAMGRPLL  325 (341)
T ss_dssp             SEEEEESSTTHHHHHHHHHHTTSTSEEEESHHHH
T ss_pred             ceEEEEeeecchhhhHHHHhcCCceEeeccHHHH
Confidence            5899999999999999999999 99999999998

It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....

>PRK04302 triosephosphate isomerase; Provisional

Probab=95.99  E-value=0.0041  Score=45.75  Aligned_cols=35  Identities=31%  Similarity=0.434  Sum_probs=32.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|+++.|||+++.|+..++..|||.|.+|+.++.+
T Consensus       174 ~pvi~GggI~~~e~~~~~~~~gadGvlVGsa~l~~  208 (223)
T PRK04302        174 VKVLCGAGISTGEDVKAALELGADGVLLASGVVKA  208 (223)
T ss_pred             CEEEEECCCCCHHHHHHHHcCCCCEEEEehHHhCC
Confidence            48999999999999999999999999999999854

>TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein

Probab=95.98  E-value=0.0053  Score=46.09  Aligned_cols=34  Identities=21%  Similarity=0.297  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||||..|+-+++..|||.|.+|+.+..
T Consensus       180 ~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~  213 (223)
T TIGR01768       180 ARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEE  213 (223)
T ss_pred             CCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhh
Confidence            4899999999999999999999999999987753

This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired.

>PLN02334 ribulose-phosphate 3-epimerase

Probab=95.92  E-value=0.01  Score=43.71  Aligned_cols=53  Identities=26%  Similarity=0.371  Sum_probs=39.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAV   60 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~   60 (100)
                      +|+.++||| |..++.+....|||.+.+|+.+..   ...   ..+.++.++++++..|.
T Consensus       175 ~~I~a~GGI-~~e~i~~l~~aGad~vvvgsai~~---~~d---~~~~~~~l~~~~~~~~~  227 (229)
T PLN02334        175 LDIEVDGGV-GPSTIDKAAEAGANVIVAGSAVFG---APD---YAEVISGLRASVEKAAV  227 (229)
T ss_pred             CcEEEeCCC-CHHHHHHHHHcCCCEEEEChHHhC---CCC---HHHHHHHHHHHHHHhhc
Confidence            378999999 789999999999999999998653   222   44555566666665543

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=95.89  E-value=0.0061  Score=47.79  Aligned_cols=32  Identities=25%  Similarity=0.304  Sum_probs=30.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|||+ +.++.++++-| ||+|++||+++
T Consensus       286 ipvi~~G~i~-~~~a~~~l~~g~~D~V~~gR~~l  318 (338)
T cd02933         286 GPLIAAGGYD-AESAEAALADGKADLVAFGRPFI  318 (338)
T ss_pred             CCEEEECCCC-HHHHHHHHHcCCCCEEEeCHhhh
Confidence            5899999997 99999999987 99999999987

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=95.88  E-value=0.0057  Score=45.76  Aligned_cols=32  Identities=25%  Similarity=0.334  Sum_probs=29.6

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +++++|||++-.|+.+...+|++.|.+|+++.
T Consensus       191 ~viasGGv~s~~Dl~~l~~~G~~gvivg~Aly  222 (232)
T PRK13586        191 LKEYAGGVSSDADLEYLKNVGFDYIIVGMAFY  222 (232)
T ss_pred             CEEEECCCCCHHHHHHHHHCCCCEEEEehhhh
Confidence            58999999999999999999999999998764

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=95.84  E-value=0.0068  Score=45.60  Aligned_cols=33  Identities=18%  Similarity=0.094  Sum_probs=28.5

Q ss_pred             CeEEEcCCCCChHHHHHHH---HhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAI---GLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAl---ALGAd~v~ig~~~L   33 (100)
                      +||+++||++|..|+.+.-   ..|++.|.+|+.+.
T Consensus       194 ~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~  229 (243)
T TIGR01919       194 AIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLY  229 (243)
T ss_pred             CCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHH
Confidence            5899999999999998764   45999999998764

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=95.49  E-value=0.025  Score=42.57  Aligned_cols=33  Identities=33%  Similarity=0.432  Sum_probs=30.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|++++|||++-.|+.+.+.+|++.|.+|+..+
T Consensus        75 ~pv~~gGGi~s~~d~~~l~~~G~~~vvigs~~~  107 (258)
T PRK01033         75 MPLCYGGGIKTLEQAKKIFSLGVEKVSINTAAL  107 (258)
T ss_pred             CCEEECCCCCCHHHHHHHHHCCCCEEEEChHHh
Confidence            589999999999999999999999999997654

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=95.45  E-value=0.011  Score=44.79  Aligned_cols=34  Identities=26%  Similarity=0.302  Sum_probs=31.5

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      ++|+-|||.|+.|+.+++.+|||.|.+|+.++.+
T Consensus       213 ~vIaegGI~t~ed~~~~~~~Gad~vlVGsaI~~~  246 (260)
T PRK00278        213 LVVSESGIFTPEDLKRLAKAGADAVLVGESLMRA  246 (260)
T ss_pred             EEEEEeCCCCHHHHHHHHHcCCCEEEECHHHcCC
Confidence            6899999999999999999999999999998853

>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI

Probab=95.40  E-value=0.013  Score=40.75  Aligned_cols=33  Identities=27%  Similarity=0.183  Sum_probs=29.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++||| +..++-..+..|||.+.+|+.+..
T Consensus       151 ~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g~~i~~  183 (196)
T cd00564         151 IPVVAIGGI-TPENAAEVLAAGADGVAVISAITG  183 (196)
T ss_pred             CCEEEECCC-CHHHHHHHHHcCCCEEEEehHhhc
Confidence            579999999 578999999999999999998763

TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=95.39  E-value=0.013  Score=43.68  Aligned_cols=32  Identities=28%  Similarity=0.303  Sum_probs=28.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~   32 (100)
                      ++|.++|||||..|+..-+.+||+.+|.+...
T Consensus       180 ~~IKasGGIrt~~~a~~~i~aGA~riGtS~~~  211 (221)
T PRK00507        180 VGVKASGGIRTLEDALAMIEAGATRLGTSAGV  211 (221)
T ss_pred             ceEEeeCCcCCHHHHHHHHHcCcceEccCcHH
Confidence            46899999999999999999999999886543

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=95.36  E-value=0.014  Score=42.83  Aligned_cols=46  Identities=30%  Similarity=0.349  Sum_probs=36.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL   51 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l   51 (100)
                      +|++++|||++-.|+.+.+..|++.|.+|+..+.     .++-+.+..+.+
T Consensus        75 ~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~~l~-----~~~~~~~~~~~~  120 (232)
T TIGR03572        75 MPLTVGGGIRSLEDAKKLLSLGADKVSINTAALE-----NPDLIEEAARRF  120 (232)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEEEEChhHhc-----CHHHHHHHHHHc
Confidence            4899999999999999999999999999987653     344444444443

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=95.33  E-value=0.0098  Score=42.27  Aligned_cols=32  Identities=34%  Similarity=0.434  Sum_probs=29.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|++++|||+ +.++.+++..|||.+.+|+++.
T Consensus       159 ~~i~~~GGI~-~~~i~~~~~~Gad~vvvGsai~  190 (202)
T cd04726         159 VKVAVAGGIT-PDTLPEFKKAGADIVIVGRAIT  190 (202)
T ss_pred             CCEEEECCcC-HHHHHHHHhcCCCEEEEeehhc
Confidence            4799999995 8999999999999999999875

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase

Probab=95.27  E-value=0.012  Score=44.16  Aligned_cols=33  Identities=33%  Similarity=0.287  Sum_probs=30.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+.++|||||-.|+-+.+.+||+-|.+|+..+
T Consensus        75 ~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~  107 (243)
T TIGR01919        75 VVEELSGGRRDDSSLRAALTGGRARVNGGTAAL  107 (243)
T ss_pred             CCEEEcCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence            478999999999999999999999999998765

This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent.

>COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=95.22  E-value=0.02  Score=44.86  Aligned_cols=34  Identities=32%  Similarity=0.437  Sum_probs=30.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~   34 (100)
                      +|||+.|+|.|+.|+.+.|.- |+|.|++||..+.
T Consensus       199 ipvi~NGdI~s~~~a~~~l~~tg~DgVMigRga~~  233 (323)
T COG0042         199 IPVIANGDIKSLEDAKEMLEYTGADGVMIGRGALG  233 (323)
T ss_pred             CeEEeCCCcCCHHHHHHHHHhhCCCEEEEcHHHcc
Confidence            689999999999999999995 6999999997754

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=95.13  E-value=0.025  Score=43.21  Aligned_cols=35  Identities=20%  Similarity=0.267  Sum_probs=31.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~a   35 (100)
                      ||||+|||.-++.|+.-++..| ||++..+..|-+.
T Consensus       200 iPvIASGGaG~~ehf~eaf~~~~adAaLAAsiFH~~  235 (256)
T COG0107         200 IPVIASGGAGKPEHFVEAFTEGKADAALAASIFHFG  235 (256)
T ss_pred             CCEEecCCCCcHHHHHHHHHhcCccHHHhhhhhhcC
Confidence            6999999999999999999999 9999888777553

>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=95.12  E-value=0.014  Score=43.37  Aligned_cols=33  Identities=33%  Similarity=0.534  Sum_probs=30.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+.++||||+-.|+-+.+..||+-|.+|+..+
T Consensus        79 ~~v~vgGGir~~edv~~~l~~Ga~~viigt~~~  111 (233)
T cd04723          79 LGLWVDGGIRSLENAQEWLKRGASRVIVGTETL  111 (233)
T ss_pred             CCEEEecCcCCHHHHHHHHHcCCCeEEEcceec
Confidence            589999999999999999999999999998654

The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl

>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=95.05  E-value=0.034  Score=41.61  Aligned_cols=32  Identities=16%  Similarity=0.229  Sum_probs=30.0

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      |+.++|||||-.|+-+.+.+||+-|.+|+..+
T Consensus        75 ~v~vGGGIrs~e~~~~~l~~Ga~kvvigt~a~  106 (232)
T PRK13586         75 WIQVGGGIRDIEKAKRLLSLDVNALVFSTIVF  106 (232)
T ss_pred             CEEEeCCcCCHHHHHHHHHCCCCEEEECchhh
Confidence            78999999999999999999999999998765

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=94.99  E-value=0.022  Score=48.92  Aligned_cols=33  Identities=24%  Similarity=0.278  Sum_probs=31.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|+|+++.++-+++.-| ||+|++||+++
T Consensus       688 ~pv~~~G~i~~~~~a~~~l~~g~~D~v~~gR~~l  721 (765)
T PRK08255        688 IATIAVGAISEADHVNSIIAAGRADLCALARPHL  721 (765)
T ss_pred             CEEEEeCCCCCHHHHHHHHHcCCcceeeEcHHHH
Confidence            5899999999999999999977 99999999998

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=94.97  E-value=0.026  Score=44.83  Aligned_cols=33  Identities=24%  Similarity=0.307  Sum_probs=30.5

Q ss_pred             CeEEEcCCC------------------CChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGI------------------RYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGI------------------r~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|+|                  +++.++-+++.-| ||+|++||+++
T Consensus       281 ~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~~D~V~~gR~~i  332 (361)
T cd04747         281 LPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGEFDLVAVGRALL  332 (361)
T ss_pred             CCEEEECCcccccccccccccccccccCCHHHHHHHHHCCCCCeehhhHHHH
Confidence            589999999                  5999999999987 99999999987

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=94.82  E-value=0.02  Score=43.14  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=30.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+.++|||||-.|+-+.+.+||+-|.+|+..+
T Consensus        74 ~~v~vGGGIrs~e~~~~~l~~Ga~rvvigT~a~  106 (241)
T PRK14114         74 EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL  106 (241)
T ss_pred             CcEEEecCCCCHHHHHHHHHCCCCEEEECchhh
Confidence            378999999999999999999999999998654

>PLN02411 12-oxophytodienoate reductase

Probab=94.79  E-value=0.023  Score=45.43  Aligned_cols=32  Identities=25%  Similarity=0.260  Sum_probs=29.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|+| ++.+..++++-| ||+|++||+++
T Consensus       314 ~pvi~~G~i-~~~~a~~~l~~g~aDlV~~gR~~i  346 (391)
T PLN02411        314 GTFMCSGGF-TRELGMQAVQQGDADLVSYGRLFI  346 (391)
T ss_pred             CCEEEECCC-CHHHHHHHHHcCCCCEEEECHHHH
Confidence            489999999 678888999999 99999999998

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=94.67  E-value=0.026  Score=44.72  Aligned_cols=32  Identities=22%  Similarity=0.191  Sum_probs=29.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|++ ++.++-++++-| ||+|++||+++
T Consensus       293 ~pv~~~G~~-~~~~ae~~i~~G~~D~V~~gR~~i  325 (362)
T PRK10605        293 GVIIGAGAY-TAEKAETLIGKGLIDAVAFGRDYI  325 (362)
T ss_pred             CCEEEeCCC-CHHHHHHHHHcCCCCEEEECHHhh
Confidence            478999986 999999999999 99999999998

>TIGR00693 thiE thiamine-phosphate pyrophosphorylase

Probab=94.61  E-value=0.031  Score=39.67  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=29.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.||| +..++-+.+..|++.|.+++.+..
T Consensus       153 ~pv~a~GGI-~~~~~~~~~~~G~~gva~~~~i~~  185 (196)
T TIGR00693       153 IPIVAIGGI-TLENAAEVLAAGADGVAVVSAIMQ  185 (196)
T ss_pred             CCEEEECCc-CHHHHHHHHHcCCCEEEEhHHhhC
Confidence            589999999 689999999999999999998874

This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=94.60  E-value=0.027  Score=42.86  Aligned_cols=34  Identities=32%  Similarity=0.371  Sum_probs=31.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~   34 (100)
                      +|+++||||++=.|+-+.-.+ |..-|.+|+++..
T Consensus       192 ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~  226 (241)
T COG0106         192 IPVIASGGVSSLDDIKALKELSGVEGVIVGRALYE  226 (241)
T ss_pred             cCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhc
Confidence            689999999999999999999 8999999998864

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=94.59  E-value=0.022  Score=43.56  Aligned_cols=33  Identities=24%  Similarity=0.198  Sum_probs=30.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+.+.||||+ .|+-+.+.+||+.|.+|+.++.
T Consensus        77 ~~v~vGGGIr~-e~v~~~l~aGa~rVvIGS~av~  109 (253)
T TIGR02129        77 GGLQVGGGIND-TNAQEWLDEGASHVIVTSWLFT  109 (253)
T ss_pred             CCEEEeCCcCH-HHHHHHHHcCCCEEEECcHHHh
Confidence            57999999998 9999999999999999987763

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA

Probab=94.36  E-value=0.016  Score=44.90  Aligned_cols=34  Identities=32%  Similarity=0.400  Sum_probs=28.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~   34 (100)
                      +|||+.|+|.|..|+-+.+.. |+|.|++||..+.
T Consensus       184 ipvi~NGdI~s~~d~~~~~~~tg~dgvMigRgal~  218 (309)
T PF01207_consen  184 IPVIANGDIFSPEDAERMLEQTGADGVMIGRGALG  218 (309)
T ss_dssp             SEEEEESS--SHHHHHHHCCCH-SSEEEESHHHCC
T ss_pred             ceeEEcCccCCHHHHHHHHHhcCCcEEEEchhhhh
Confidence            699999999999999999988 9999999997753

Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y.

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=94.08  E-value=0.083  Score=39.92  Aligned_cols=34  Identities=26%  Similarity=0.418  Sum_probs=27.5

Q ss_pred             CeEEEcCCCC--ChHHHHHH----HHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIR--YGTDVFKA----IGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr--~g~Di~KA----lALGAd~v~ig~~~L~   34 (100)
                      +||.++|||+  |..|+.+.    +..||+.+.+|+.+..
T Consensus       197 ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~  236 (267)
T PRK07226        197 VPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQ  236 (267)
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhc
Confidence            5899999999  65555544    5999999999988774

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=93.96  E-value=0.042  Score=38.97  Aligned_cols=33  Identities=24%  Similarity=0.340  Sum_probs=29.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||.. .++.+++..|||.+.+|+++..
T Consensus       167 ~pi~v~GGI~~-env~~~~~~gad~iivgsai~~  199 (211)
T cd00429         167 LLIEVDGGINL-ETIPLLAEAGADVLVAGSALFG  199 (211)
T ss_pred             eEEEEECCCCH-HHHHHHHHcCCCEEEECHHHhC
Confidence            37899999996 8888999999999999998874

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=93.77  E-value=0.056  Score=38.42  Aligned_cols=32  Identities=22%  Similarity=0.354  Sum_probs=28.3

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      |++++|||+ ..++.+++..|||.+.+|+++..
T Consensus       167 ~i~v~GGI~-~env~~l~~~gad~iivgsai~~  198 (210)
T TIGR01163       167 LIEVDGGVN-DDNARELAEAGADILVAGSAIFG  198 (210)
T ss_pred             eEEEECCcC-HHHHHHHHHcCCCEEEEChHHhC
Confidence            688999995 68888889999999999998863

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=93.76  E-value=0.19  Score=38.81  Aligned_cols=54  Identities=22%  Similarity=0.200  Sum_probs=40.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      +|+.+.=||+++.|+.+.... ||.|.+|+.+...+..+..+...+.+..+.+++
T Consensus       206 ~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~~i~~~~~~~~~~~~~~l~~~l  259 (265)
T COG0159         206 VPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVKIIEEGLDEEALEELRALVKEL  259 (265)
T ss_pred             CCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHHHHHhccchhhHHHHHHHHHHH
Confidence            478899999999999999999 999999999999988643222233333444444

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=93.76  E-value=0.14  Score=37.61  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=30.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.||| +..++..-+..||+.|++++.+..
T Consensus       152 ipvvaiGGI-~~~n~~~~~~aGa~~vav~s~l~~  184 (206)
T PRK09140        152 VPVFAVGGV-TPENLAPYLAAGAAGFGLGSALYR  184 (206)
T ss_pred             CeEEEECCC-CHHHHHHHHHCCCeEEEEehHhcc
Confidence            589999999 889999999999999999988865

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=93.70  E-value=0.073  Score=39.55  Aligned_cols=48  Identities=17%  Similarity=0.351  Sum_probs=35.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      +++.+||||. ...+-+....|||.+.+|+.+..   ...   ..+.++.+++.+
T Consensus       168 ~~I~vdGGI~-~eni~~l~~aGAd~vVvGSaIf~---~~d---~~~~i~~l~~~~  215 (220)
T PRK08883        168 IRLEIDGGVK-VDNIREIAEAGADMFVAGSAIFG---QPD---YKAVIDEMRAEL  215 (220)
T ss_pred             eeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhC---CCC---HHHHHHHHHHHH
Confidence            3688999998 88899999999999999987643   122   455555555543

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=93.60  E-value=0.082  Score=42.40  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=45.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNNLVP   80 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~~e~~~   80 (100)
                      +|++++||| +...+..++..|||.+.+|+.+..+   ..   ..+..+.+++.++..| .....++.+-...++.+.+.
T Consensus       163 iPI~a~GGI-~~~n~~~~l~aGAdgv~vGsaI~~~---~d---~~~~~~~l~~~i~~~~-~~~~~~~~~~~~~~~~~~l~  234 (430)
T PRK07028        163 IPIAVAGGL-DAETAAKAVAAGADIVIVGGNIIKS---AD---VTEAARKIREAIDSGK-PVKIDKFKKSLDEEIREIFM  234 (430)
T ss_pred             CcEEEECCC-CHHHHHHHHHcCCCEEEEChHHcCC---CC---HHHHHHHHHHHHhccC-CccccccccCCCHHHHHHhc
Confidence            589999999 6888999999999999999987642   22   3334444555554422 22233333333344444443


Q ss_pred             H
Q psy7649          81 T   81 (100)
Q Consensus        81 ~   81 (100)
                      .
T Consensus       235 ~  235 (430)
T PRK07028        235 Q  235 (430)
T ss_pred             C
Confidence            3

>COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism]

Probab=93.60  E-value=0.06  Score=41.20  Aligned_cols=34  Identities=32%  Similarity=0.384  Sum_probs=31.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      ||+-+.||||+-.|+-|-|..|||=|.+-++.+.
T Consensus        75 iPltVGGGI~s~eD~~~ll~aGADKVSINsaAv~  108 (256)
T COG0107          75 IPLTVGGGIRSVEDARKLLRAGADKVSINSAAVK  108 (256)
T ss_pred             eeeEecCCcCCHHHHHHHHHcCCCeeeeChhHhc
Confidence            6899999999999999999999999999988764

>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]

Probab=93.40  E-value=0.049  Score=41.06  Aligned_cols=32  Identities=34%  Similarity=0.385  Sum_probs=29.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~   32 (100)
                      ++||+-|.+.||.+..||+-+||++|.+|+++
T Consensus       181 ~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAI  212 (229)
T COG3010         181 CRVIAEGRYNTPEQAKKAIEIGADAVVVGSAI  212 (229)
T ss_pred             CeEEeeCCCCCHHHHHHHHHhCCeEEEECccc
Confidence            47999999999999999999999999999765

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=93.40  E-value=0.061  Score=38.52  Aligned_cols=32  Identities=16%  Similarity=0.093  Sum_probs=29.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+++.||| +..++...+..||+.|+++..+.
T Consensus       144 ~p~~a~GGI-~~~n~~~~~~~G~~~v~v~s~i~  175 (190)
T cd00452         144 VRFMPTGGV-SLDNAAEWLAAGVVAVGGGSLLP  175 (190)
T ss_pred             CeEEEeCCC-CHHHHHHHHHCCCEEEEEchhcc
Confidence            589999999 99999999999999999998775

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4

Probab=93.35  E-value=0.052  Score=41.41  Aligned_cols=34  Identities=29%  Similarity=0.361  Sum_probs=29.6

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      .+++-+||.++.|+.+....|+|+|.+|..++.+
T Consensus       211 ~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~  244 (254)
T PF00218_consen  211 IVISESGIKTPEDARRLARAGADAVLVGEALMRS  244 (254)
T ss_dssp             EEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTS
T ss_pred             eEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence            4789999999999999999999999999999864

1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=93.35  E-value=0.17  Score=37.42  Aligned_cols=52  Identities=15%  Similarity=0.119  Sum_probs=37.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH   53 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~   53 (100)
                      +|+++.|||. ..++..-++.||+.+++|+.+........-+.+.+..+.+.+
T Consensus       156 ip~~atGGI~-~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~  207 (213)
T PRK06552        156 VNVMVTGGVN-LDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMS  207 (213)
T ss_pred             CEEEEECCCC-HHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHH
Confidence            5899999996 688999999999999999988654332222445544444433

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=93.24  E-value=0.27  Score=37.63  Aligned_cols=49  Identities=29%  Similarity=0.304  Sum_probs=36.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL   51 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l   51 (100)
                      +|+.+.=||+++.|+.+.. -|||.|.+|+.++..+...++ ...+.++.+
T Consensus       199 ~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~~-~~~~~~~~~  247 (259)
T PF00290_consen  199 LPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENGD-DAEKFLKEL  247 (259)
T ss_dssp             S-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTCC-HHHHHHHHH
T ss_pred             cceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHccc-cHHHHHHHH
Confidence            4789999999999997666 999999999999999886442 234444443

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]

Probab=93.12  E-value=0.074  Score=40.53  Aligned_cols=80  Identities=20%  Similarity=0.237  Sum_probs=59.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhH-------HHHhcccccHHHhhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILP-------EAVADKVHNAYSIFFL   73 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~-------~m~l~g~~n~~~l~~~   73 (100)
                      +||-+.||||+-.++-+.+.+|++-|.+|+..     ...++=+.+..+.+-+++-.       .-...|+....++...
T Consensus        76 ~~vQvGGGIRs~~~v~~ll~~G~~rViiGt~a-----v~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~  150 (241)
T COG0106          76 VPVQVGGGIRSLEDVEALLDAGVARVIIGTAA-----VKNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELE  150 (241)
T ss_pred             CCEEeeCCcCCHHHHHHHHHCCCCEEEEecce-----ecCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHH
Confidence            47889999999999999999999999999865     34566677766665422211       1255677777777778


Q ss_pred             HHHHHHHHcCcC
Q psy7649          74 ELNNLVPTLLLG   85 (100)
Q Consensus        74 e~~e~~~~lG~~   85 (100)
                      ++.+.+...|..
T Consensus       151 ~l~~~~~~~g~~  162 (241)
T COG0106         151 ELAKRLEEVGLA  162 (241)
T ss_pred             HHHHHHHhcCCC
Confidence            888888888876

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=93.09  E-value=0.11  Score=37.22  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=27.5

Q ss_pred             EEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         3 liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +.++|||+. .++.+++..|+|.|.+|+.+..
T Consensus       173 i~v~GGI~~-~nv~~l~~~GaD~vvvgSai~~  203 (220)
T PRK05581        173 IEVDGGINA-DNIKECAEAGADVFVAGSAVFG  203 (220)
T ss_pred             EEEECCCCH-HHHHHHHHcCCCEEEEChhhhC
Confidence            679999998 6888888899999999998874

>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type

Probab=92.99  E-value=0.084  Score=40.38  Aligned_cols=33  Identities=21%  Similarity=0.194  Sum_probs=25.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHh--CcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL--GAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL--GAd~v~ig~~~L   33 (100)
                      +|||+|||+.+-.|+.+.-.+  |..-+.+|+.+.
T Consensus       202 ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf  236 (253)
T TIGR02129       202 IPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALD  236 (253)
T ss_pred             CCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHH
Confidence            689999999999999988666  433355666544

This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=92.94  E-value=0.1  Score=38.66  Aligned_cols=30  Identities=27%  Similarity=0.375  Sum_probs=27.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGR   30 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~   30 (100)
                      ++|-++|||||..|++.-+.+||+-+|.+.
T Consensus       176 v~IKaaGGirt~~~a~~~i~aGa~riGts~  205 (211)
T TIGR00126       176 IGVKASGGVRTAEDAIAMIEAGASRIGASA  205 (211)
T ss_pred             CeEEEeCCCCCHHHHHHHHHHhhHHhCcch
Confidence            478999999999999999999999988754

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=92.91  E-value=0.061  Score=41.36  Aligned_cols=32  Identities=31%  Similarity=0.318  Sum_probs=27.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC--cchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG--AKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG--Ad~v~ig~~~   32 (100)
                      +|||+||||++-.|+.+...+|  ...|.+|+++
T Consensus       208 ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl  241 (262)
T PLN02446        208 IPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSAL  241 (262)
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeH
Confidence            5899999999999999999986  4667788775

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=92.89  E-value=0.076  Score=37.99  Aligned_cols=32  Identities=34%  Similarity=0.399  Sum_probs=27.3

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      ++.++||| +..++-..+..|||.+.+|+.+..
T Consensus       160 ~i~v~GGI-~~~n~~~~~~~Ga~~v~vGsai~~  191 (206)
T TIGR03128       160 RVAVAGGI-NLDTIPDVIKLGPDIVIVGGAITK  191 (206)
T ss_pred             cEEEECCc-CHHHHHHHHHcCCCEEEEeehhcC
Confidence            46679999 778888999999999999998653

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=92.88  E-value=0.16  Score=37.09  Aligned_cols=34  Identities=32%  Similarity=0.458  Sum_probs=28.8

Q ss_pred             CeEEEcCCC--CChHH----HHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGI--RYGTD----VFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGI--r~g~D----i~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++||+  +|..|    +-.++..||+.|.+||.+..
T Consensus       180 ~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~  219 (235)
T cd00958         180 VPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQ  219 (235)
T ss_pred             CCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhc
Confidence            578999998  66766    77889999999999998874

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=92.72  E-value=0.089  Score=40.50  Aligned_cols=31  Identities=13%  Similarity=0.030  Sum_probs=28.7

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      .+.+|||| |+..+.+...+|+|.+.+|.+.-
T Consensus       231 ~ieAsGgI-t~~ni~~ya~~GvD~IsvG~l~~  261 (273)
T PRK05848        231 LLEASGNI-TLENINAYAKSGVDAISSGSLIH  261 (273)
T ss_pred             EEEEECCC-CHHHHHHHHHcCCCEEEeChhhc
Confidence            58999999 99999999999999999998764

>PRK11750 gltB glutamate synthase subunit alpha; Provisional

Probab=92.42  E-value=0.72  Score=42.97  Aligned_cols=26  Identities=19%  Similarity=0.351  Sum_probs=23.6

Q ss_pred             eEEE-cCCCCChHHHHHHHHhCcchHh
Q psy7649           2 EVYL-DGGIRYGTDVFKAIGLGAKYVF   27 (100)
Q Consensus         2 ~lia-sGGIr~g~Di~KAlALGAd~v~   27 (100)
                      .||+ ||.+|+.-|+++.+.+|||+|.
T Consensus       651 sLIveSGe~RevHhfA~LiGyGA~AV~  677 (1485)
T PRK11750        651 NIIVETASARDPHHFAVLLGFGATAVY  677 (1485)
T ss_pred             eEEEecCCcCCHHHHHHHHhcChhhhh
Confidence            4566 9999999999999999999995

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=92.12  E-value=0.14  Score=41.41  Aligned_cols=32  Identities=38%  Similarity=0.537  Sum_probs=27.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +++.++|||. ..++-.++..|||.+.+||.+.
T Consensus       331 ~~I~VdGGI~-~eti~~l~~aGADivVVGsaIf  362 (391)
T PRK13307        331 ILVAVAGGVR-VENVEEALKAGADILVVGRAIT  362 (391)
T ss_pred             CcEEEECCcC-HHHHHHHHHcCCCEEEEeHHHh
Confidence            3689999998 7778888999999999999854

>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]

Probab=92.07  E-value=0.087  Score=40.13  Aligned_cols=31  Identities=23%  Similarity=0.344  Sum_probs=25.5

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA   32 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~   32 (100)
                      ++|+.||||++...-+...-|||.+..|+.+
T Consensus       193 ~LivGGGIrs~E~A~~~a~agAD~IVtG~ii  223 (240)
T COG1646         193 PLIVGGGIRSPEQAREMAEAGADTIVTGTII  223 (240)
T ss_pred             eEEEcCCcCCHHHHHHHHHcCCCEEEECcee
Confidence            6899999999987755555599999999755

>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family

Probab=92.03  E-value=0.062  Score=39.04  Aligned_cols=34  Identities=32%  Similarity=0.450  Sum_probs=26.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+|+.|=|++..|+-.||.-||++|.-+.+-||
T Consensus       141 ~PiIAGGLI~~~e~v~~al~aGa~aVSTS~~~LW  174 (175)
T PF04309_consen  141 IPIIAGGLIRTKEDVEEALKAGADAVSTSNKELW  174 (175)
T ss_dssp             S-EEEESS--SHHHHHHHCCTTCEEEEE--HHHC
T ss_pred             CCEEeecccCCHHHHHHHHHcCCEEEEcCChHhc
Confidence            5899999999999999999999999988877665

Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=91.84  E-value=0.29  Score=36.67  Aligned_cols=34  Identities=29%  Similarity=0.400  Sum_probs=26.6

Q ss_pred             CeEEEcCCCC--ChHHHH----HHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIR--YGTDVF----KAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr--~g~Di~----KAlALGAd~v~ig~~~L~   34 (100)
                      +||.+.|||+  +..|++    .++..||+.+.+++.++.
T Consensus       193 iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~  232 (258)
T TIGR01949       193 APVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQ  232 (258)
T ss_pred             CcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhc
Confidence            5899999999  544444    445899999999988774

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=91.52  E-value=0.09  Score=44.01  Aligned_cols=34  Identities=9%  Similarity=0.001  Sum_probs=29.6

Q ss_pred             CeEEEcCCCCChHHHHHHHH-hCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIG-LGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlA-LGAd~v~ig~~~L~   34 (100)
                      +|||+|||+.+..|+.+++. -|||++..|..|-+
T Consensus       483 ipviasGG~g~~~d~~~~~~~~~~~a~~aa~~fh~  517 (538)
T PLN02617        483 IPVIASSGAGTPEHFSDVFSKTNASAALAAGIFHR  517 (538)
T ss_pred             CCEEEECCCCCHHHHHHHHhcCCccEEEEEeeecc
Confidence            69999999999999999997 56999988876654

>KOG2335|consensus

Probab=91.28  E-value=0.14  Score=41.05  Aligned_cols=34  Identities=29%  Similarity=0.374  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHHH-hCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIG-LGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlA-LGAd~v~ig~~~L~   34 (100)
                      +|+++-|+|.+..|+-.++- -|||.|+.|+..|+
T Consensus       204 ipviaNGnI~~~~d~~~~~~~tG~dGVM~arglL~  238 (358)
T KOG2335|consen  204 IPVIANGNILSLEDVERCLKYTGADGVMSARGLLY  238 (358)
T ss_pred             CcEEeeCCcCcHHHHHHHHHHhCCceEEecchhhc
Confidence            68999999999999999999 99999999997765

>PLN02460 indole-3-glycerol-phosphate synthase

Probab=91.20  E-value=0.18  Score=40.12  Aligned_cols=33  Identities=27%  Similarity=0.259  Sum_probs=30.4

Q ss_pred             EEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         3 liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +++-+||+|+.|+......|||+|.+|..++.+
T Consensus       291 ~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~  323 (338)
T PLN02460        291 VVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQ  323 (338)
T ss_pred             EEECCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence            577799999999999999999999999999864

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=90.97  E-value=0.15  Score=36.86  Aligned_cols=32  Identities=19%  Similarity=0.150  Sum_probs=28.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+++.||| |..++..-++.||+.|++++.+.
T Consensus       153 ipvvaiGGI-~~~n~~~~l~aGa~~vav~s~i~  184 (187)
T PRK07455        153 IPLIPTGGV-TLENAQAFIQAGAIAVGLSGQLF  184 (187)
T ss_pred             CcEEEeCCC-CHHHHHHHHHCCCeEEEEehhcc
Confidence            589999999 78999999999999999998664

>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase

Probab=90.92  E-value=0.16  Score=39.03  Aligned_cols=33  Identities=18%  Similarity=0.279  Sum_probs=29.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||-+.||||+ .|+-+.+.+||+-|.+|+..+.
T Consensus        84 ~~vqvGGGIR~-e~i~~~l~~Ga~rViigT~Av~  116 (262)
T PLN02446         84 GGLQVGGGVNS-ENAMSYLDAGASHVIVTSYVFR  116 (262)
T ss_pred             CCEEEeCCccH-HHHHHHHHcCCCEEEEchHHHh
Confidence            47889999997 9999999999999999987653

>COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism]

Probab=90.89  E-value=0.13  Score=39.63  Aligned_cols=33  Identities=30%  Similarity=0.442  Sum_probs=29.2

Q ss_pred             EEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         3 liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      -++.|||.||.|.+-..-||||.|++|.-+.++
T Consensus       211 nFAAGGvATPADAALMM~LGadGVFVGSGIFKS  243 (296)
T COG0214         211 NFAAGGVATPADAALMMQLGADGVFVGSGIFKS  243 (296)
T ss_pred             eecccCcCChhHHHHHHHhCCCeEEecccccCC
Confidence            478999999999999999999999999866543

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=90.59  E-value=0.65  Score=34.22  Aligned_cols=46  Identities=24%  Similarity=0.260  Sum_probs=36.1

Q ss_pred             EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHH
Q psy7649           4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQ   49 (100)
Q Consensus         4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~   49 (100)
                      +...|+||+.++..|+.+|||.|-+.-.++..+....  .+++..+.+
T Consensus       160 il~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v~~F~~  207 (211)
T cd00956         160 ILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLE  207 (211)
T ss_pred             EEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHHHHHHH
Confidence            4567899999999999999999999999999887542  344444433

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>TIGR00734 hisAF_rel hisA/hisF family protein

Probab=90.59  E-value=0.19  Score=37.19  Aligned_cols=33  Identities=30%  Similarity=0.240  Sum_probs=28.0

Q ss_pred             CeEEEcCCCCChHHHHHHHH-h-CcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIG-L-GAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlA-L-GAd~v~ig~~~L   33 (100)
                      +|+.++|||||..|+-+.+. + ||+-|.+|+..+
T Consensus        78 ~~v~vgGGirs~e~~~~~~~~l~~a~rvvigT~a~  112 (221)
T TIGR00734        78 VELIADCGVRSPEDLETLPFTLEFASRVVVATETL  112 (221)
T ss_pred             CcEEEcCccCCHHHHHHHHhhhccceEEeecChhh
Confidence            37899999999999988865 2 699999998765

This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.

>KOG1606|consensus

Probab=90.49  E-value=0.43  Score=36.53  Aligned_cols=31  Identities=29%  Similarity=0.470  Sum_probs=28.0

Q ss_pred             EEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +++||+.||.|.+-.+-||.|.|++|.-+..
T Consensus       213 FAaGGvaTPADAALmMQLGCdGVFVGSgiFk  243 (296)
T KOG1606|consen  213 FAAGGVATPADAALMMQLGCDGVFVGSGIFK  243 (296)
T ss_pred             ecccCcCChhHHHHHHHcCCCeEEecccccc
Confidence            7899999999999999999999999976553

>PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional

Probab=90.03  E-value=0.19  Score=43.31  Aligned_cols=34  Identities=21%  Similarity=0.163  Sum_probs=31.1

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      .+|+-+||+++.|+.+....|||+|.+|..+|.+
T Consensus       213 ~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~  246 (695)
T PRK13802        213 IKVAESGVFGAVEVEDYARAGADAVLVGEGVATA  246 (695)
T ss_pred             EEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCC
Confidence            4678899999999999999999999999988875

>PRK03903 transaldolase; Provisional

Probab=89.77  E-value=3  Score=32.35  Aligned_cols=71  Identities=8%  Similarity=0.089  Sum_probs=51.9

Q ss_pred             eEEEcCCCCC----hHHHHHHHHhCcchHhhhHHHHHHHhccC---------HHHHHHHHHHHHH------HHhHHHHhc
Q psy7649           2 EVYLDGGIRY----GTDVFKAIGLGAKYVFVGRAALWGLAHSG---------SNGAARVLQSLVH------KILPEAVAD   62 (100)
Q Consensus         2 ~liasGGIr~----g~Di~KAlALGAd~v~ig~~~L~al~~~g---------~~gv~~~i~~l~~------el~~~m~l~   62 (100)
                      .+++|-|+|+    ..++++++..|++.+-+.-..+.++...|         .+++..+.+.|.+      ++.....-.
T Consensus       179 iL~AStg~Kn~~~~~~~yv~~L~~g~~v~T~P~~tl~a~~~hg~~~~~~~~~~~~~~~f~~~~~~~gid~~~v~~~L~~e  258 (274)
T PRK03903        179 TLFASTGVKGDDLPKDYYIKELLFKNSINTAPLDTIEAFLKDGNTEPKKPLKIEEIEAFFKELKSHNIDLENTYQKLLKD  258 (274)
T ss_pred             EEEEecccCCCCCChHHHHHHHhCCCCeeeCCHHHHHHHHhcCCccCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence            4789999999    99999999999999999999999987753         4666666665542      233344455


Q ss_pred             ccccHHHhhH
Q psy7649          63 KVHNAYSIFF   72 (100)
Q Consensus        63 g~~n~~~l~~   72 (100)
                      |++.+.+.+.
T Consensus       259 g~~~F~~af~  268 (274)
T PRK03903        259 GLEAFKQAFE  268 (274)
T ss_pred             HHHHHHHHHH
Confidence            5555555444

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=89.58  E-value=0.24  Score=35.57  Aligned_cols=33  Identities=30%  Similarity=0.190  Sum_probs=29.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~   34 (100)
                      +|+++.||| |+..+..++..| ++.|-+.+.+..
T Consensus       153 ~PvilaGGI-~~~Nv~~~i~~~~~~gvdv~S~ie~  186 (203)
T cd00405         153 KPVILAGGL-TPDNVAEAIRLVRPYGVDVSSGVET  186 (203)
T ss_pred             CCEEEECCC-ChHHHHHHHHhcCCCEEEcCCcccC
Confidence            589999999 999999999999 999998877653

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PRK13957 indole-3-glycerol-phosphate synthase; Provisional

Probab=89.41  E-value=0.25  Score=37.62  Aligned_cols=33  Identities=18%  Similarity=0.102  Sum_probs=28.8

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      .+|+-+||+|+.|+.+.... +|+|.+|..++.+
T Consensus       204 ~~IsESGI~t~~d~~~l~~~-~davLvG~~lm~~  236 (247)
T PRK13957        204 VKVGESGIESRSDLDKFRKL-VDAALIGTYFMEK  236 (247)
T ss_pred             EEEEcCCCCCHHHHHHHHHh-CCEEEECHHHhCC
Confidence            46788999999999887776 9999999999864

>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional

Probab=89.30  E-value=0.55  Score=37.38  Aligned_cols=33  Identities=30%  Similarity=0.349  Sum_probs=29.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++-||| +..++-+.++.||+.|.+.+.+..
T Consensus       295 iPv~AiGGI-~~~ni~~l~~~Ga~gVAvisaI~~  327 (347)
T PRK02615        295 IPWFAIGGI-DKSNIPEVLQAGAKRVAVVRAIMG  327 (347)
T ss_pred             CCEEEECCC-CHHHHHHHHHcCCcEEEEeHHHhC
Confidence            589999999 588999999999999999998874

>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]

Probab=88.98  E-value=0.41  Score=36.75  Aligned_cols=34  Identities=26%  Similarity=0.317  Sum_probs=31.3

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      .+|+-+||.++.|+.+....|||++.+|..+|..
T Consensus       209 ~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~  242 (254)
T COG0134         209 ILISESGISTPEDVRRLAKAGADAFLVGEALMRA  242 (254)
T ss_pred             EEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcC
Confidence            4788899999999999999999999999999864

>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional

Probab=88.91  E-value=0.76  Score=34.09  Aligned_cols=33  Identities=18%  Similarity=0.236  Sum_probs=30.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++=||| +..++..++..||+.|.+-+.++.
T Consensus       165 iPvvAIGGI-~~~n~~~~~~~GA~giAvisai~~  197 (221)
T PRK06512        165 IPCIVQAGS-DLASAVEVAETGAEFVALERAVFD  197 (221)
T ss_pred             CCEEEEeCC-CHHHHHHHHHhCCCEEEEhHHhhC
Confidence            689999999 999999999999999999888764

>PRK12376 putative translaldolase; Provisional

Probab=88.88  E-value=1  Score=34.07  Aligned_cols=49  Identities=16%  Similarity=0.050  Sum_probs=38.3

Q ss_pred             EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhc-------cCHHHHHHHHHHHH
Q psy7649           4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAH-------SGSNGAARVLQSLV   52 (100)
Q Consensus         4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~-------~g~~gv~~~i~~l~   52 (100)
                      |....||++.++.+++..|||.+-+.-.++..+..       ...+++..+.+.|.
T Consensus       174 ILaASiR~~~~v~~a~~~Gad~vTvp~~v~~~l~~~~~~~~~~t~~~v~~F~~Dw~  229 (236)
T PRK12376        174 LLWASPREVYNIIQADQLGCDIITVTPDVLKKLPLLGKDLEELSLETVKGFAKDAQ  229 (236)
T ss_pred             EEEEecCCHHHHHHHHHcCCCEEEcCHHHHHHHHhcCCCCCchhHHHHHHHHHHHH
Confidence            34457999999999999999999999888888763       24566666666554

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=87.79  E-value=0.27  Score=35.51  Aligned_cols=48  Identities=25%  Similarity=0.334  Sum_probs=33.5

Q ss_pred             EEEcCCCCChH-HHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649           3 VYLDGGIRYGT-DVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL   56 (100)
Q Consensus         3 liasGGIr~g~-Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~   56 (100)
                      .++||||+... ++-+++..|||.+.+||++..+   ..   ..+.++.++++++
T Consensus       165 ~ivdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~---~d---~~~~~~~l~~~~~  213 (215)
T PRK13813        165 KIISPGIGAQGGKAADAIKAGADYVIVGRSIYNA---AD---PREAAKAINEEIR  213 (215)
T ss_pred             EEEeCCcCCCCCCHHHHHHcCCCEEEECcccCCC---CC---HHHHHHHHHHHHh
Confidence            34899999863 5678888999999999985532   22   4555556666553

>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport

Probab=87.35  E-value=0.48  Score=36.31  Aligned_cols=31  Identities=16%  Similarity=0.138  Sum_probs=27.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~   32 (100)
                      +|++++||| +...+..-...|+|.+.++..+
T Consensus       231 i~i~AsGGI-~~~ni~~~~~~Gvd~I~vsai~  261 (272)
T cd01573         231 VLLAAAGGI-NIENAAAYAAAGADILVTSAPY  261 (272)
T ss_pred             ceEEEECCC-CHHHHHHHHHcCCcEEEEChhh
Confidence            589999999 8899999999999999777653

In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=86.90  E-value=1.1  Score=33.23  Aligned_cols=48  Identities=19%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL   56 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~   56 (100)
                      .+.+||||+. ..+-.+...|||.+.+|+++..   ...+   .+.++.++++++
T Consensus       175 ~I~VdGGI~~-~ti~~~~~aGad~iVvGsaI~~---a~d~---~~~~~~i~~~~~  222 (228)
T PTZ00170        175 NIQVDGGINL-ETIDIAADAGANVIVAGSSIFK---AKDR---KQAIELLRESVQ  222 (228)
T ss_pred             eEEECCCCCH-HHHHHHHHcCCCEEEEchHHhC---CCCH---HHHHHHHHHHHH
Confidence            5789999976 4677888899999999998643   2223   444555555544

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=86.57  E-value=0.39  Score=38.49  Aligned_cols=28  Identities=32%  Similarity=0.425  Sum_probs=25.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVG   29 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig   29 (100)
                      +|||+ |++.+..|+.+++..|||.|.+|
T Consensus       189 IPVI~-G~V~t~e~A~~~~~aGaDgV~~G  216 (369)
T TIGR01304       189 VPVIA-GGVNDYTTALHLMRTGAAGVIVG  216 (369)
T ss_pred             CCEEE-eCCCCHHHHHHHHHcCCCEEEEC
Confidence            58887 99999999999999999999755

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain

Probab=86.39  E-value=2.2  Score=33.97  Aligned_cols=29  Identities=14%  Similarity=0.031  Sum_probs=24.9

Q ss_pred             cccccHHHhhHHHHHHHHHHcCcCCCCCC
Q psy7649          62 DKVHNAYSIFFLELNNLVPTLLLGSIQPP   90 (100)
Q Consensus        62 ~g~~n~~~l~~~e~~e~~~~lG~~s~~~~   90 (100)
                      .|+.++.+.+..|++.+|..+|++++++.
T Consensus       318 ~gv~~~l~~l~~El~~~m~l~G~~~i~el  346 (351)
T cd04737         318 QGVASVLEHLNKELKIVMQLAGTRTIEDV  346 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCHHHh
Confidence            45678889999999999999999988743

LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=86.19  E-value=0.58  Score=34.43  Aligned_cols=30  Identities=37%  Similarity=0.369  Sum_probs=25.6

Q ss_pred             EEEcCCC------CChHHHHHHHHhCc--chHhhhHHH
Q psy7649           3 VYLDGGI------RYGTDVFKAIGLGA--KYVFVGRAA   32 (100)
Q Consensus         3 liasGGI------r~g~Di~KAlALGA--d~v~ig~~~   32 (100)
                      |.+|||+      ++..++.+.+..||  .-+..||.+
T Consensus       196 Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i  233 (236)
T PF01791_consen  196 VKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNI  233 (236)
T ss_dssp             EEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHH
T ss_pred             EEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            9999999      99999999999999  555566644

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=85.64  E-value=0.69  Score=35.06  Aligned_cols=31  Identities=29%  Similarity=0.309  Sum_probs=26.5

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA   32 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~   32 (100)
                      .+=+||||||..|+.+.+.+||.-+|.++..
T Consensus       185 gvKaSGGIrt~eda~~~i~aga~RiGtSs~v  215 (228)
T COG0274         185 GVKASGGIRTAEDAKAMIEAGATRIGTSSGV  215 (228)
T ss_pred             eeeccCCcCCHHHHHHHHHHhHHHhccccHH
Confidence            3558999999999999999999888877644

>PRK08649 inosine 5-monophosphate dehydrogenase; Validated

Probab=85.19  E-value=0.52  Score=37.72  Aligned_cols=29  Identities=31%  Similarity=0.364  Sum_probs=26.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGR   30 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~   30 (100)
                      +|||+ |+|.|..++.+++..|||+|.+|+
T Consensus       188 ipVIa-G~V~t~e~A~~l~~aGAD~V~VG~  216 (368)
T PRK08649        188 VPVIV-GGCVTYTTALHLMRTGAAGVLVGI  216 (368)
T ss_pred             CCEEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence            57888 899999999999999999998874

>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=85.11  E-value=0.71  Score=35.64  Aligned_cols=32  Identities=19%  Similarity=0.322  Sum_probs=28.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+.++||| |...+......|+|.+.+|.+.-
T Consensus       234 i~leAsGGI-t~~ni~~~a~tGvD~Isvg~lt~  265 (277)
T PRK05742        234 AKLEASGGI-NESTLRVIAETGVDYISIGAMTK  265 (277)
T ss_pred             CcEEEECCC-CHHHHHHHHHcCCCEEEEChhhc
Confidence            589999999 68899999999999999997654

>PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional

Probab=85.11  E-value=0.56  Score=38.57  Aligned_cols=33  Identities=18%  Similarity=0.083  Sum_probs=28.2

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      .+++-+||+|+.|+.+.. -|||+|.+|..+|.+
T Consensus       212 ~~vseSGI~t~~d~~~~~-~~~davLiG~~lm~~  244 (454)
T PRK09427        212 IVISESGIYTHAQVRELS-PFANGFLIGSSLMAE  244 (454)
T ss_pred             EEEEeCCCCCHHHHHHHH-hcCCEEEECHHHcCC
Confidence            467889999999998864 589999999999864

>PLN02617 imidazole glycerol phosphate synthase hisHF

Probab=85.00  E-value=0.73  Score=38.65  Aligned_cols=34  Identities=24%  Similarity=0.327  Sum_probs=30.3

Q ss_pred             CeEEEcCCCCCh-----------HHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYG-----------TDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g-----------~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+-+.||||+-           .|+-+.|..|||-|.+++..+.
T Consensus       315 ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~GadkV~i~s~Av~  359 (538)
T PLN02617        315 VPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGADKISIGSDAVY  359 (538)
T ss_pred             CCEEEcCCccccccccccccchHHHHHHHHHcCCCEEEEChHHHh
Confidence            689999999998           4588999999999999997765

>PRK12655 fructose-6-phosphate aldolase; Reviewed

Probab=84.54  E-value=2.7  Score=31.37  Aligned_cols=49  Identities=6%  Similarity=0.068  Sum_probs=39.1

Q ss_pred             EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649           4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV   52 (100)
Q Consensus         4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~   52 (100)
                      +....+|+..++..++..|+|.+-+.-.++..+....  .+++.++.+.|+
T Consensus       162 ILaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~  212 (220)
T PRK12655        162 VLAASFKTPRQALDCLLAGCQSITLPLDVAQQMLNTPAVESAIEKFEQDWQ  212 (220)
T ss_pred             EEEEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCChHHHHHHHHHHHH
Confidence            4556799999999999999999999999998887532  466666666554

>TIGR00875 fsa_talC_mipB fructose-6-phosphate aldolase, TalC/MipB family

Probab=84.09  E-value=3.2  Score=30.82  Aligned_cols=49  Identities=18%  Similarity=0.196  Sum_probs=37.7

Q ss_pred             EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649           4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV   52 (100)
Q Consensus         4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~   52 (100)
                      +....+|+..++..+..+|+|.|-+.-.++..+....  ..++.++-+.|.
T Consensus       160 IlaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~d~~  210 (213)
T TIGR00875       160 VIAASVRHPRHVLEAALIGADIATMPLDVMQQLFNHPLTDIGLERFLKDWN  210 (213)
T ss_pred             EEEeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4566899999999999999999999999999886432  455555544443

This model represents a family that includes the E. coli transaldolase homologs TalC and MipB, both shown to be fructose-6-phosphate aldolases rather than transaldolases as previously thought. It is related to but distinct from the transaldolase family of E. coli TalA and TalB. The member from Bacillus subtilis becomes phosphorylated during early stationary phase but not during exponential growth.

>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes

Probab=83.78  E-value=0.97  Score=34.44  Aligned_cols=31  Identities=16%  Similarity=0.178  Sum_probs=26.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~   32 (100)
                      +|+.++||| |...+..-.+.|||.+.+|.++
T Consensus       228 i~i~asGGI-t~~ni~~~a~~Gad~Isvgal~  258 (269)
T cd01568         228 VLLEASGGI-TLENIRAYAETGVDVISTGALT  258 (269)
T ss_pred             eEEEEECCC-CHHHHHHHHHcCCCEEEEcHHH
Confidence            489999999 5788889999999999987554

It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.

>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase

Probab=83.69  E-value=0.99  Score=34.48  Aligned_cols=31  Identities=16%  Similarity=0.164  Sum_probs=27.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~   32 (100)
                      +|+.++||| |...+..-...|+|.+.+|.+.
T Consensus       223 ipi~AsGGI-~~~ni~~~a~~Gvd~Isvgait  253 (265)
T TIGR00078       223 VLLEASGGI-TLDNLEEYAETGVDVISSGALT  253 (265)
T ss_pred             CcEEEECCC-CHHHHHHHHHcCCCEEEeCHHH
Confidence            589999999 6888989999999999997654

Synonym: quinolinate phosphoribosyltransferase (decarboxylating)

>PRK12653 fructose-6-phosphate aldolase; Reviewed

Probab=83.60  E-value=3.1  Score=31.02  Aligned_cols=49  Identities=8%  Similarity=0.053  Sum_probs=37.5

Q ss_pred             EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649           4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV   52 (100)
Q Consensus         4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~   52 (100)
                      +....+|+..|+..++.+|+|.+-+.-.++..+....  .+++.++.+.|.
T Consensus       162 ILaAS~r~~~~v~~~~~~G~d~vTip~~vl~~l~~~p~t~~~~~~F~~dw~  212 (220)
T PRK12653        162 VLAASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQ  212 (220)
T ss_pred             EEEEecCCHHHHHHHHHcCCCEEECCHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4556799999999999999999999999999886532  345555544443

>PRK01362 putative translaldolase; Provisional

Probab=82.97  E-value=4.1  Score=30.29  Aligned_cols=50  Identities=16%  Similarity=0.157  Sum_probs=38.4

Q ss_pred             EEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649           3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV   52 (100)
Q Consensus         3 liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~   52 (100)
                      -+....+|+..++..+...|+|.+-+.-.++..+....  .+++.++.+.|.
T Consensus       159 kilaAS~r~~~~v~~~~~~G~d~iTi~~~vl~~l~~~p~t~~~~~~F~~dw~  210 (214)
T PRK01362        159 EIIAASVRHPMHVLEAALAGADIATIPYKVIKQLFKHPLTDKGLEKFLADWE  210 (214)
T ss_pred             EEEEeecCCHHHHHHHHHcCCCEEecCHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            35567899999999999999999999999998887532  455555554443

>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain

Probab=82.69  E-value=2  Score=34.68  Aligned_cols=87  Identities=22%  Similarity=0.194  Sum_probs=53.0

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHH----------HHHHHhcc--------------C---HHHHHHHHH-----
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRA----------ALWGLAHS--------------G---SNGAARVLQ-----   49 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~----------~L~al~~~--------------g---~~gv~~~i~-----   49 (100)
                      ||++- ||-+..|+.+|+..|+|.+.++..          .+.+|...              |   ...+.+.+.     
T Consensus       255 pvivK-gV~~~~dA~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~  333 (383)
T cd03332         255 PIVLK-GILHPDDARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKA  333 (383)
T ss_pred             CEEEe-cCCCHHHHHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCE
Confidence            55554 889999999999999999876532          11111100              0   001111110     


Q ss_pred             -----HHHHHHhHHHHhcccccHHHhhHHHHHHHHHHcCcCCCCCC
Q psy7649          50 -----SLVHKILPEAVADKVHNAYSIFFLELNNLVPTLLLGSIQPP   90 (100)
Q Consensus        50 -----~l~~el~~~m~l~g~~n~~~l~~~e~~e~~~~lG~~s~~~~   90 (100)
                           -+...+. .-.-.|+.++.+.+..|++..|..+|..++.+.
T Consensus       334 v~iGr~~l~~l~-~~G~~gv~~~l~~l~~El~~~m~l~G~~~i~~l  378 (383)
T cd03332         334 VLIGRPYAYGLA-LGGEDGVEHVLRNLLAELDLTMGLAGIRSIAEL  378 (383)
T ss_pred             EEEcHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHCCCCHHHh
Confidence                 0011110 123457889999999999999999999988743

LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.

>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=82.55  E-value=1.1  Score=34.83  Aligned_cols=32  Identities=13%  Similarity=0.170  Sum_probs=28.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +++.++||| |...+..-.+.|+|.+.+|.+..
T Consensus       244 i~leAsGGI-t~~ni~~ya~tGvD~Isvgsl~~  275 (288)
T PRK07428        244 VKIEASGNI-TLETIRAVAETGVDYISSSAPIT  275 (288)
T ss_pred             eEEEEECCC-CHHHHHHHHHcCCCEEEEchhhh
Confidence            479999999 78999999999999999998765

>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []

Probab=82.40  E-value=3  Score=28.32  Aligned_cols=25  Identities=24%  Similarity=0.251  Sum_probs=20.1

Q ss_pred             EEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649           4 YLDGGIRYGTDVFKAIGLGAKYVFVG   29 (100)
Q Consensus         4 iasGGIr~g~Di~KAlALGAd~v~ig   29 (100)
                      -.+|-| ++..+++|+.-|||.|.+.
T Consensus        35 pC~Grv-~~~~il~Af~~GADGV~V~   59 (124)
T PF02662_consen   35 PCSGRV-DPEFILRAFEKGADGVLVA   59 (124)
T ss_pred             cCCCcc-CHHHHHHHHHcCCCEEEEe
Confidence            334444 7899999999999999985

No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process

>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase

Probab=82.09  E-value=1.7  Score=35.53  Aligned_cols=33  Identities=27%  Similarity=0.205  Sum_probs=29.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcc---hHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAK---YVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd---~v~ig~~~L~   34 (100)
                      +|+++-||| +..++...+..||+   .|.+++.+..
T Consensus       445 ~Pv~aiGGI-~~~~~~~~~~~G~~~~~gvav~~~i~~  480 (502)
T PLN02898        445 LPVVAIGGI-SASNAASVMESGAPNLKGVAVVSALFD  480 (502)
T ss_pred             CCEEEECCC-CHHHHHHHHHcCCCcCceEEEEeHHhc
Confidence            589999999 58999999999999   9999988863

>PRK12656 fructose-6-phosphate aldolase; Reviewed

Probab=81.29  E-value=4.5  Score=30.30  Aligned_cols=49  Identities=18%  Similarity=0.142  Sum_probs=38.0

Q ss_pred             EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649           4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV   52 (100)
Q Consensus         4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~   52 (100)
                      |....+|+..++..+...|||.+-+.-.++..+....  ..++.++.+.|.
T Consensus       164 ILaAS~r~~~~v~~a~~~G~d~vTvp~~vl~~l~~~p~t~~~~~~F~~dw~  214 (222)
T PRK12656        164 ILAASFKNVAQVNKAFALGAQAVTAGPDVFEAAFAMPSIQKAVDDFADDWE  214 (222)
T ss_pred             EEEEecCCHHHHHHHHHcCCCEEecCHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            4456799999999999999999999999998875322  456666665554

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=81.23  E-value=1.9  Score=32.16  Aligned_cols=46  Identities=20%  Similarity=0.359  Sum_probs=32.3

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHK   54 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~e   54 (100)
                      .|.+||||. ...+-+....|||.+.+|+.+. .  ...   ....++.+++.
T Consensus       173 ~IeVDGGI~-~eti~~l~~aGaDi~V~GSaiF-~--~~d---~~~~~~~lr~~  218 (223)
T PRK08745        173 RLEIDGGVK-ADNIGAIAAAGADTFVAGSAIF-N--APD---YAQVIAQMRAA  218 (223)
T ss_pred             eEEEECCCC-HHHHHHHHHcCCCEEEEChhhh-C--CCC---HHHHHHHHHHH
Confidence            478999997 5567788899999999998743 2  222   45555555544

>PF04898 Glu_syn_central: Glutamate synthase central domain; InterPro: IPR006982 Glutamate synthase (GltS)1 is a key enzyme in the early stages of the assimilation of ammonia in bacteria, yeasts, and plants

Probab=80.22  E-value=5.3  Score=31.20  Aligned_cols=67  Identities=18%  Similarity=0.169  Sum_probs=40.7

Q ss_pred             EEEcCCCCChHHHHHHHHhCcchHh--hhHHHHHHHhccC-------HHHHHHHHHHHHHHHhHHHHhcccccHHH
Q psy7649           3 VYLDGGIRYGTDVFKAIGLGAKYVF--VGRAALWGLAHSG-------SNGAARVLQSLVHKILPEAVADKVHNAYS   69 (100)
Q Consensus         3 liasGGIr~g~Di~KAlALGAd~v~--ig~~~L~al~~~g-------~~gv~~~i~~l~~el~~~m~l~g~~n~~~   69 (100)
                      |+=||-+|+.-|++..+.+|||+|.  ++-..+..+...+       ++.+.++.+.+.+.|...|.--|+..+..
T Consensus       198 Ivesge~re~Hh~a~LlGyGA~AV~PYla~e~~~~~~~~~~~~~~~~~~~~~ny~~a~~kGllKimSKMGIstl~S  273 (287)
T PF04898_consen  198 IVESGEAREVHHFATLLGYGADAVNPYLAYETIRELAERGELPELSPEEAIKNYRKALEKGLLKIMSKMGISTLQS  273 (287)
T ss_dssp             EEEESS--SHHHHHHHHCTT-SEEEEHCCHHHHHHCCCCCCCCT--HHHHHHHHHHHHHHHHHHHHHCTT--BHHH
T ss_pred             EEecCCcccHHHHHHHHcCCHhhhcHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHhcChHHhhh
Confidence            5568999999999999999999984  2222222222222       45666667777777777777666665543

In bacteria, L-glutamate is involved in osmoregulation, is the precursor for other amino acids, and can be the precursor for haem biosynthesis. In plants, GltS is especially essential in the reassimilation of ammonia released by photorespiration. On the basis of the amino acid sequence and the nature of the electron donor, three different classes of GltS can de defined as follows: 1) ferredoxin-dependent GltS (Fd-GltS), 2) NADPH-dependent GltS (NADPH-GltS), and 3) NADH-dependent GltS (properties of the three classes have been reviewed extensively []). The enzyme is a complex iron-sulphur flavoprotein catalysing the reductive transfer of the amido nitrogen from L-glutamine to 2-oxoglutarate to form two molecules of L-glutamate via intramolecular channelling of ammonia from the amidotransferase domain to the FMN-binding domain. Reaction of amidotransferase domain: L-glutamine + H2O = L-glutamate + NH3 Reactions of FMN-binding domain: 2-oxoglutarate + NH3 = 2-iminoglutarate + H2O 2e + FMNox = FMNred 2-iminoglutarate + FMNred = L-glutamate + FMNox The central domain of glutamate synthase connects the N-terminal amidotransferase domain with the FMN-binding domain and has an alpha/beta overall topology [].; GO: 0015930 glutamate synthase activity, 0006807 nitrogen compound metabolic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	100
1tb3_A	352	Crystal Structure Analysis Of Recombinant Rat Kidne		3e-12
3sgz_A	352	High Resolution Crystal Structure Of Rat Long Chain		3e-12
2w0u_A	370	Crystal Structure Of Human Glycolate Oxidase In Com		3e-12
2nzl_A	392	Crystal Structure Of Human Hydroxyacid Oxidase 1 Le		3e-12
2rdt_A	387	Crystal Structure Of Human Glycolate Oxidase (Go) I		5e-12
1gyl_A	369	Involvement Of Tyr24 And Trp108 In Substrate Bindin		1e-09
1gox_A	370	Refined Structure Of Spinach Glycolate Oxidase At 2		1e-09
1al7_A	359	Three-Dimensional Structures Of Glycolate Oxidase W		1e-09
2cdh_0	226	Architecture Of The Thermomyces Lanuginosus Fungal		1e-09
2oz0_A	511	Mechanistic And Structural Studies Of H373q Flavocy		1e-07
1kbj_A	412	Crystallographic Study Of The Recombinant Flavin-Bi		1e-07
1qcw_A	410	Flavocytochrome B2, Arg289lys Mutant Length = 410		1e-07
1ldc_A	511	X-Ray Structure Of Two Complexes Of The Y143f Flavo		1e-07
1fcb_A	511	Molecular Structure Of Flavocytochrome B2 At 2.4 An		1e-07
1sze_A	511	L230a Mutant Flavocytochrome B2 With Benzoylformate		1e-07
1szf_A	511	A198g:l230a Mutant Flavocytochrome B2 With Pyruvate		1e-07
1ltd_A	506	The 2.6 Angstroms Refined Structure Of The Escheric		1e-07
2a7n_A	380	Crystal Structure Of The G81a Mutant Of The Active		3e-07
1huv_A	380	Crystal Structure Of A Soluble Mutant Of The Membra		3e-07

>pdb|1TB3|A Chain A, Crystal Structure Analysis Of Recombinant Rat Kidney Long- Chain Hydroxy Acid Oxidase Length = 352

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EVY+DGG+R GTDV KA+ LGA+ +F+GR  LWGLA  G +G   VL  L  ++
Sbjct: 273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAEL 327

>pdb|3SGZ|A Chain A, High Resolution Crystal Structure Of Rat Long Chain Hydroxy Acid Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4-Chiorophenyl) Sulfanyl]-1, 2, 3-Thiadiazole. Length = 352

Iteration: 1
 Score = 67.0 bits (162), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 29/55 (52%), Positives = 39/55 (70%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EVY+DGG+R GTDV KA+ LGA+ +F+GR  LWGLA  G +G   VL  L  ++
Sbjct: 273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAEL 327

>pdb|2W0U|A Chain A, Crystal Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 5-[(4-Chlorophenyl)sulfanyl]- 1,2,3-Thiadiazole-4-Carboxylate. Length = 370

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 37/51 (72%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EV+LDGG+R GTDV KA+ LGAK VFVGR  +WGLA  G  G   VL+ L
Sbjct: 286 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEIL 336

>pdb|2NZL|A Chain A, Crystal Structure Of Human Hydroxyacid Oxidase 1 Length = 392

Iteration: 1
 Score = 66.6 bits (161), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 31/51 (60%), Positives = 37/51 (72%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EV+LDGG+R GTDV KA+ LGAK VFVGR  +WGLA  G  G   VL+ L
Sbjct: 308 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEIL 358

>pdb|2RDT|A Chain A, Crystal Structure Of Human Glycolate Oxidase (Go) In Complex With Cdst Length = 387

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 31/51 (60%), Positives = 37/51 (72%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EV+LDGG+R GTDV KA+ LGAK VFVGR  +WGLA  G  G   VL+ L
Sbjct: 303 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEIL 353

>pdb|1GYL|A Chain A, Involvement Of Tyr24 And Trp108 In Substrate Binding And Substrate Specificity Of Glycolate Oxidase Length = 369

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           V+LDGG+R GTDVFKA+ LGA  VF+GR  ++ LA  G  G  +VLQ +
Sbjct: 282 VFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 330

>pdb|1GOX|A Chain A, Refined Structure Of Spinach Glycolate Oxidase At 2 Angstroms Resolution Length = 370

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           V+LDGG+R GTDVFKA+ LGA  VF+GR  ++ LA  G  G  +VLQ +
Sbjct: 283 VFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 331

>pdb|1AL7|A Chain A, Three-Dimensional Structures Of Glycolate Oxidase With Bound Active- Site Inhibitors Length = 359

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           V+LDGG+R GTDVFKA+ LGA  VF+GR  ++ LA  G  G  +VLQ +
Sbjct: 282 VFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 330

>pdb|2CDH|0 Chain 0, Architecture Of The Thermomyces Lanuginosus Fungal Fatty Acid Synthase At 5 Angstrom Resolution. Length = 226

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/49 (55%), Positives = 35/49 (71%)
Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           V+LDGG+R GTDVFKA+ LGA  VF+GR  ++ LA  G  G  +VLQ +
Sbjct: 166 VFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 214

>pdb|2OZ0|A Chain A, Mechanistic And Structural Studies Of H373q Flavocytochrome B2: Effects Of Mutating The Active Site Base Length = 511

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EV++DGG+R GTDV KA+ LGAK V +GR  L+  +  G NG  + ++ L  +I
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 458

>pdb|1KBJ|A Chain A, Crystallographic Study Of The Recombinant Flavin-Binding Domain Of Baker's Yeast Flavocytochrome B2: Comparison With The Intact Wild- Type Enzyme Length = 412

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EV++DGG+R GTDV KA+ LGAK V +GR  L+  +  G NG  + ++ L  +I
Sbjct: 305 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 359

>pdb|1QCW|A Chain A, Flavocytochrome B2, Arg289lys Mutant Length = 410

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EV++DGG+R GTDV KA+ LGAK V +GR  L+  +  G NG  + ++ L  +I
Sbjct: 303 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 357

>pdb|1LDC|A Chain A, X-Ray Structure Of Two Complexes Of The Y143f Flavocytochrome B2 Mutant Crystallized In The Presence Of Lactate Or Phenyl-Lactate Length = 511

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EV++DGG+R GTDV KA+ LGAK V +GR  L+  +  G NG  + ++ L  +I
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 458

>pdb|1FCB|A Chain A, Molecular Structure Of Flavocytochrome B2 At 2.4 Angstroms Resolution Length = 511

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EV++DGG+R GTDV KA+ LGAK V +GR  L+  +  G NG  + ++ L  +I
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 458

>pdb|1SZE|A Chain A, L230a Mutant Flavocytochrome B2 With Benzoylformate Length = 511

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EV++DGG+R GTDV KA+ LGAK V +GR  L+  +  G NG  + ++ L  +I
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 458

>pdb|1SZF|A Chain A, A198g:l230a Mutant Flavocytochrome B2 With Pyruvate Bound Length = 511

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EV++DGG+R GTDV KA+ LGAK V +GR  L+  +  G NG  + ++ L  +I
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 458

>pdb|1LTD|A Chain A, The 2.6 Angstroms Refined Structure Of The Escherichia Coli Recombinant Saccharomyces Cerevisiae Flavocytochrome B2-Sulphite Complex Length = 506

Iteration: 1
 Score = 51.2 bits (121), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +EV++DGG+R GTDV KA+ LGAK V +GR  L+  +  G NG  + ++ L  +I
Sbjct: 399 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 453

>pdb|2A7N|A Chain A, Crystal Structure Of The G81a Mutant Of The Active Chimera Of (S)- Mandelate Dehydrogenase Length = 380

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           V +D G R G+D+ KA+ LGA+ V +GRA L+GLA  G  G   VL  L
Sbjct: 281 VLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLL 329

>pdb|1HUV|A Chain A, Crystal Structure Of A Soluble Mutant Of The Membrane-Associated (S)- Mandelate Dehydrogenase From Pseudomonas Putida At 2.15a Resolution Length = 380

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 24/49 (48%), Positives = 31/49 (63%)
Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           V +D G R G+D+ KA+ LGA+ V +GRA L+GLA  G  G   VL  L
Sbjct: 281 VLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLL 329

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	100
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	1e-23
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	5e-23
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	7e-23
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	8e-23
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	9e-23
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	6e-22
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	8e-17
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	4e-16
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	7e-13
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	8e-12
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	9e-04

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* Length = 352

 Score = 91.0 bits (227), Expect = 1e-23
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EVY+DGG+R GTDV KA+ LGA+ +F+GR  LWGLA  G +G   VL  L
Sbjct: 273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDIL 323

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* Length = 511

 Score = 90.5 bits (225), Expect = 5e-23
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EV++DGG+R GTDV KA+ LGAK V +GR  L+  +  G NG  + ++ L
Sbjct: 404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEIL 454

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* Length = 368

 Score = 89.1 bits (222), Expect = 7e-23
 Identities = 21/51 (41%), Positives = 27/51 (52%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           + +  D G+R G  V KA+  GA  V +GR  L+GLA  G  GA  VL   
Sbjct: 285 VPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYF 335

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* Length = 392

 Score = 89.2 bits (222), Expect = 8e-23
 Identities = 31/51 (60%), Positives = 37/51 (72%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EV+LDGG+R GTDV KA+ LGAK VFVGR  +WGLA  G  G   VL+ L
Sbjct: 308 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEIL 358

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 Length = 370

 Score = 89.1 bits (222), Expect = 9e-23
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           + V+LDGG+R GTDVFKA+ LGA  VF+GR  ++ LA  G  G  +VLQ +
Sbjct: 281 IPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 331

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* Length = 380

 Score = 86.9 bits (216), Expect = 6e-22
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
             V +D G R G+D+ KA+ LGA+ V +GRA L+GLA  G  G   VL  L
Sbjct: 279 KPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLL 329

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} Length = 365

 Score = 72.5 bits (178), Expect = 8e-17
 Identities = 15/55 (27%), Positives = 26/55 (47%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           +E+   GGIR+  D+ KA+ LGAK V + R  L  +     +    ++      +
Sbjct: 279 VEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDL 333

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Length = 349

 Score = 70.9 bits (174), Expect = 4e-16
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
             +   GG++   DV KAI LGA    +    L  L  SG  G    +Q ++ ++
Sbjct: 252 STMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEEL 306

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* Length = 368

 Score = 61.4 bits (149), Expect = 7e-13
 Identities = 14/55 (25%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
             +   GGIR G D  KAI LGA    +    L      G     +  + ++ ++
Sbjct: 268 SFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAIE-GKESLEQFFRKIIFEL 321

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* Length = 332

 Score = 58.4 bits (141), Expect = 8e-12
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           + +   GG+  GTD  KA+ LGA  + V R  L      G+   A  +   + ++
Sbjct: 257 LPLVASGGVYTGTDGAKALALGADLLAVARPLLRPALE-GAERVAAWIGDYLEEL 310

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} Length = 361

 Score = 35.7 bits (83), Expect = 9e-04
 Identities = 11/24 (45%), Positives = 16/24 (66%)

Query: 6   DGGIRYGTDVFKAIGLGAKYVFVG 29
           DGGI+   D+ KA+  GA +V +G
Sbjct: 205 DGGIKTSGDIVKALAFGADFVMIG 228

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	100
3vkj_A	368	Isopentenyl-diphosphate delta-isomerase; type 2 is	99.75
3sr7_A	365	Isopentenyl-diphosphate delta-isomerase; isopenten	99.74
3sgz_A	352	Hydroxyacid oxidase 2; flavoprotein, homology, INH	99.7
2nli_A	368	Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid	99.68
2nzl_A	392	Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G	99.66
1p0k_A	349	Isopentenyl-diphosphate delta-isomerase; terpene b	99.65
1kbi_A	511	Cytochrome B2, L-LCR; flavocytochrome B2, electron	99.64
1vcf_A	332	Isopentenyl-diphosphate delta-isomerase; TIM barre	99.6
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	99.59
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	99.57
1gox_A	370	(S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu	99.55
1p4c_A	380	L(+)-mandelate dehydrogenase; TIM barrel, hydroxy	99.51
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	99.49
1ofd_A	1520	Ferredoxin-dependent glutamate synthase 2; oxidore	99.45
1ea0_A	1479	Glutamate synthase [NADPH] large chain; oxidoreduc	99.44
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	99.38
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	99.36
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	99.34
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	99.32
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	99.3
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	99.28
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	99.26
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	99.05
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	99.03
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	98.94
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	98.92
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	98.9
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.88
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	98.83
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	98.74
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	98.71
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	98.69
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	98.69
4ef8_A	354	Dihydroorotate dehydrogenase; phenyl isothiocyanat	98.67
3oix_A	345	Putative dihydroorotate dehydrogenase; dihydrooro	98.65
3i65_A	415	Dihydroorotate dehydrogenase homolog, mitochondria	98.65
1tv5_A	443	Dhodehase, dihydroorotate dehydrogenase homolog, m	98.65
3tjx_A	354	Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh	98.52
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	98.52
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	98.43
1f76_A	336	Dihydroorotate dehydrogenase; monomer, alpha-beta-	98.38
1vhn_A	318	Putative flavin oxidoreducatase; structural genomi	98.35
2gjl_A	328	Hypothetical protein PA1024; 2-nitropropane dioxyg	98.31
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	98.26
3bw2_A	369	2-nitropropane dioxygenase; TIM barrel, oxidoreduc	97.96
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	97.85
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	97.84
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	97.81
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	97.79
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	97.77
2uva_G	2060	Fatty acid synthase beta subunits; fungal, dehydra	97.76
1wv2_A	265	Thiazole moeity, thiazole biosynthesis protein THI	97.76
2htm_A	268	Thiazole biosynthesis protein THIG; thiamin biosyn	97.71
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	97.66
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	97.66
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	97.64
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	97.58
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	97.57
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	97.48
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	97.39
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	97.38
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	97.35
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	97.33
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	97.32
2zbt_A	297	Pyridoxal biosynthesis lyase PDXS; pyridoxine bios	97.32
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	97.32
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	97.31
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	97.24
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	97.22
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	97.22
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	97.2
2nv1_A	305	Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b	97.18
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	97.17
3kts_A	192	Glycerol uptake operon antiterminator regulatory;	97.15
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	97.1
2uv8_G	2051	Fatty acid synthase subunit beta (FAS1); fatty aci	97.1
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	97.07
1yad_A	221	Regulatory protein TENI; TIM barrel, transcription	97.04
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	96.96
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	96.92
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	96.91
4adt_A	297	Pyridoxine biosynthetic enzyme PDX1 homologue, PU;	96.9
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	96.89
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	96.87
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	96.8
3vk5_A	286	MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S	96.78
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.78
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	96.76
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	96.75
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	96.72
1vkf_A	188	Glycerol uptake operon antiterminator-related Pro;	96.7
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	96.7
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	96.64
2yzr_A	330	Pyridoxal biosynthesis lyase PDXS; redox protein,	96.56
2czd_A	208	Orotidine 5'-phosphate decarboxylase; pyrimidine b	96.47
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	96.47
3l5a_A	419	NADH/flavin oxidoreductase/NADH oxidase; OLD yello	96.41
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	96.37
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	96.37
3o07_A	291	Pyridoxine biosynthesis protein SNZ1; (beta/alpha)	96.37
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	96.37
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	96.37
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	96.35
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	96.33
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	96.32
1viz_A	240	PCRB protein homolog; structural genomics, unknown	96.31
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	96.25
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	96.18
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	96.12
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	96.09
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	96.08
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	96.08
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	96.07
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	96.07
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	96.06
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	96.06
3cwo_X	237	Beta/alpha-barrel protein based on 1THF and 1TMY;	96.02
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	96.02
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	96.0
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	96.0
3o63_A	243	Probable thiamine-phosphate pyrophosphorylase; thi	95.97
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	95.9
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	95.87
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	95.84
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	95.75
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	95.68
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	95.51
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	95.47
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	95.37
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	95.16
2h6r_A	219	Triosephosphate isomerase; beta-alpha barrel; 2.30	95.08
3oa3_A	288	Aldolase; structural genomics, seattle structural	94.7
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	94.67
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	94.57
4a29_A	258	Engineered retro-aldol enzyme RA95.0; de novo prot	94.41
4gbu_A	400	NADPH dehydrogenase 1; alpha/beta barrel, enenone	94.38
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	94.17
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	94.08
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	94.06
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	93.97
1i4n_A	251	Indole-3-glycerol phosphate synthase; thermostable	93.95
1q6o_A	216	Humps, 3-keto-L-gulonate 6-phosphate decarboxylase	93.84
3tjl_A	407	NADPH dehydrogenase; OLD yellow enzyme, flavin mon	93.84
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	93.66
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	93.58
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	93.56
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	93.49
3ceu_A	210	Thiamine phosphate pyrophosphorylase; TIM barrel-l	93.48
3exr_A	221	RMPD (hexulose-6-phosphate synthase); beta barrel,	93.11
4a3u_A	358	NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET	93.1
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	92.94
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	92.55
1w0m_A	226	TIM, triosephosphate isomerase; glycolysis, glucon	92.12
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	91.96
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	91.22
1pii_A	452	N-(5'phosphoribosyl)anthranilate isomerase; bifunc	90.72
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	90.44
1jvn_A	555	Glutamine, bifunctional histidine biosynthesis pro	90.43
2agk_A	260	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	89.67
2b7n_A	273	Probable nicotinate-nucleotide pyrophosphorylase;	89.64
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	89.09
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	88.75
1dbt_A	239	Orotidine 5'-phosphate decarboxylase; UMP, TIM bar	87.88
1hg3_A	225	Triosephosphate isomerase; thermostability, tetram	87.83
2yyu_A	246	Orotidine 5'-phosphate decarboxylase; TIM barrel,	87.46
1qap_A	296	Quinolinic acid phosphoribosyltransferase; glycosy	87.45
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	87.36
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	87.12
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	87.05
3nl6_A	540	Thiamine biosynthetic bifunctional enzyme; thiamin	86.47
2jbm_A	299	Nicotinate-nucleotide pyrophosphorylase; NAD, enzy	86.42
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	86.24
3s1x_A	223	Probable transaldolase; alpha-beta barrel, conform	85.05
3ve9_A	215	Orotidine-5'-phosphate decarboxylase; TIM barrel f	84.93
1eix_A	245	Orotidine 5'-monophosphate decarboxylase; alpha-be	84.52
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	84.45
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	84.15
1vpx_A	230	Protein (transaldolase (EC 2.2.1.2)); TM0295, stru	83.22
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	82.19
3c2e_A	294	Nicotinate-nucleotide pyrophosphorylase; qprtase,	82.06
3r8r_A	212	Transaldolase; pentose phosphate pathway, schiff b	81.78
1x1o_A	286	Nicotinate-nucleotide pyrophosphorylase; transfera	81.63
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	80.73

>3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A*

Probab=99.75  E-value=4.5e-18  Score=132.87  Aligned_cols=84  Identities=18%  Similarity=0.191  Sum_probs=79.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH------HH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF------LE   74 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~------~e   74 (100)
                      +|||+||||+||.|++||+++|||+|++||||++++. .|+++|.+.++.+.+||+..|.+.|+.++.++..      .+
T Consensus       268 ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l~~~~-~G~~~v~~~l~~l~~eL~~~m~~~G~~~i~el~~~~l~~~~~  346 (368)
T 3vkj_A          268 SFLVGSGGIRSGLDAAKAIALGADIAGMALPVLKSAI-EGKESLEQFFRKIIFELKAAMMLTGSKDVDALKKTSIVILGK  346 (368)
T ss_dssp             CEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHHHTTCCBHHHHHTCCEEECHH
T ss_pred             CcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHh-cChHHHHHHHHHHHHHHHHHHHHhCCCCHHHhccCCEEechh
Confidence            5899999999999999999999999999999999987 6999999999999999999999999999999875      88


Q ss_pred             HHHHHHHcCcC
Q psy7649          75 LNNLVPTLLLG   85 (100)
Q Consensus        75 ~~e~~~~lG~~   85 (100)
                      +++|+.++|++
T Consensus       347 l~~~~~~r~~~  357 (368)
T 3vkj_A          347 LKEWAEYRGIN  357 (368)
T ss_dssp             HHHHHHHHTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999986

>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}

Probab=99.74  E-value=3.1e-18  Score=133.88  Aligned_cols=78  Identities=22%  Similarity=0.193  Sum_probs=74.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH------HH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF------LE   74 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~------~e   74 (100)
                      +|||+||||+||.|++|||+||||+|++||+||+++.+.|+++|.+.++.+++||+..|.+.|+.++.++..      .+
T Consensus       279 ipvia~GGI~~g~Dv~KaLalGAdaV~ig~~~l~a~~~~G~~~v~~~l~~l~~eL~~~m~~~G~~si~eL~~~~~~~~~~  358 (365)
T 3sr7_A          279 VEILASGGIRHPLDIIKALVLGAKAVGLSRTMLELVEQHSVHEVIAIVNGWKEDLRLIMCALNCQTIAELRNVDYLLYGR  358 (365)
T ss_dssp             SEEEECSSCCSHHHHHHHHHHTCSEEEESHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCSSTGGGGGCCEEECHH
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCcCHHHhccCCEEEccc
Confidence            589999999999999999999999999999999999999999999999999999999999999999999886      67


Q ss_pred             HHHH
Q psy7649          75 LNNL   78 (100)
Q Consensus        75 ~~e~   78 (100)
                      +++|
T Consensus       359 ~~~~  362 (365)
T 3sr7_A          359 LREG  362 (365)
T ss_dssp             HHHH
T ss_pred             hhhh
Confidence            7777

>3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A*

Probab=99.70  E-value=1.5e-17  Score=129.64  Aligned_cols=72  Identities=42%  Similarity=0.734  Sum_probs=69.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                      +|||+||||++|.|++|||++|||+|++||+||+++++.|++||.+.++.+++||+..|.+.|+.++.++..
T Consensus       273 ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l~~l~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~  344 (352)
T 3sgz_A          273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISP  344 (352)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBGGGCCG
T ss_pred             CeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhh
Confidence            689999999999999999999999999999999999999999999999999999999999999999888753

>2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A*

Probab=99.68  E-value=4.7e-17  Score=126.79  Aligned_cols=72  Identities=31%  Similarity=0.412  Sum_probs=69.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                      +|||+||||++|.|++|+|++|||+|++||||++++++.|++||.+.++.+++||+..|.+.|+.++.++..
T Consensus       285 ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~~l~~  356 (368)
T 2nli_A          285 VPIVFDSGVRRGEHVAKALASGADVVALGRPVLFGLALGGWQGAYSVLDYFQKDLTRVMQLTGSQNVEDLKG  356 (368)
T ss_dssp             SCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHT
T ss_pred             CeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCcCHHHhcc
Confidence            689999999999999999999999999999999999999999999999999999999999999999988765

>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*

Probab=99.66  E-value=7.9e-17  Score=126.57  Aligned_cols=74  Identities=45%  Similarity=0.677  Sum_probs=70.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLE   74 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e   74 (100)
                      +|||+||||++|.|++|||++|||+|++|||+++++.+.|++|+.+.++.+++||+..|.+.|+.++.++....
T Consensus       308 ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~~~~~~g~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~  381 (392)
T 2nzl_A          308 VEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTL  381 (392)
T ss_dssp             SEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBGGGCCGGG
T ss_pred             CEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhhhh
Confidence            68999999999999999999999999999999999999999999999999999999999999999999886644

>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*

Probab=99.65  E-value=3.2e-16  Score=120.05  Aligned_cols=85  Identities=20%  Similarity=0.177  Sum_probs=80.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH------HH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF------LE   74 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~------~e   74 (100)
                      +|||++|||+|+.|+.|++++|||+|++|+++++.+.+.|++++.+.++.+.+||+..|.+.|+.++.++..      .+
T Consensus       252 ipvia~GGI~~~~d~~k~l~~GAd~V~iG~~~l~~~~~~g~~~~~~~~~~~~~~l~~~m~~~G~~~i~el~~~~~~~~~~  331 (349)
T 1p0k_A          252 STMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGE  331 (349)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBHHHHTTCCEEECHH
T ss_pred             CeEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhhCCeeccHH
Confidence            689999999999999999999999999999999998888899999999999999999999999999999876      68


Q ss_pred             HHHHHHHcCcC
Q psy7649          75 LNNLVPTLLLG   85 (100)
Q Consensus        75 ~~e~~~~lG~~   85 (100)
                      +++|++++|++
T Consensus       332 ~~~~~~~~~~~  342 (349)
T 1p0k_A          332 THHWLTERGVN  342 (349)
T ss_dssp             HHHHHHHTTCC
T ss_pred             HHHHHHHcCCC
Confidence            99999999885

>1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A*

Probab=99.64  E-value=1.5e-16  Score=128.56  Aligned_cols=72  Identities=36%  Similarity=0.483  Sum_probs=69.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                      +|||+||||+||.|++|||++|||+|++||||++++.+.|++|+.+.++.+++||+..|.+.|+.++.++..
T Consensus       404 ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l~~~~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~  475 (511)
T 1kbi_A          404 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKP  475 (511)
T ss_dssp             BEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCG
T ss_pred             cEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCcHHHHhH
Confidence            589999999999999999999999999999999999989999999999999999999999999999988765

>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*

Probab=99.60  E-value=7.2e-16  Score=117.67  Aligned_cols=71  Identities=24%  Similarity=0.255  Sum_probs=67.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                      +|||++|||+|+.|++|+|++|||+|++||+|++++ +.|++++.+.++.+.+||+..|.+.|+.++.++..
T Consensus       257 ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l~~~-~~G~~gv~~~~~~l~~el~~~m~~~G~~~i~el~~  327 (332)
T 1vcf_A          257 LPLVASGGVYTGTDGAKALALGADLLAVARPLLRPA-LEGAERVAAWIGDYLEELRTALFAIGARNPKEARG  327 (332)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHH-TTCHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGTT
T ss_pred             CeEEEECCCCCHHHHHHHHHhCCChHhhhHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHhh
Confidence            689999999999999999999999999999999998 78999999999999999999999999999988753

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=99.59  E-value=4.2e-16  Score=119.55  Aligned_cols=72  Identities=26%  Similarity=0.301  Sum_probs=57.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH--------------------HHHhccCHHHHH---------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL--------------------WGLAHSGSNGAA---------------   45 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L--------------------~al~~~g~~gv~---------------   45 (100)
                      +|||+||||+++.|++||+++|||+|++||+|+                    +++++.+++|+.               
T Consensus       211 ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~l~t~Es~~~~~~~~g~~~k~~~g~~~~~~~g~~~~~~g~~~~~~~~g~  290 (336)
T 1ypf_A          211 KPIIADGGIRTNGDVAKSIRFGATMVMIGSLFAGHEESPGETIEKDGKLYKEYFGSASEFQKGEKKNVEGKKMFVEHKGS  290 (336)
T ss_dssp             SCEEEESCCCSTHHHHHHHHTTCSEEEESGGGTTCTTSSSCCC-----------------------CTTSCCSSSSCCCC
T ss_pred             CcEEEeCCCCCHHHHHHHHHcCCCEEEeChhhhccccCCCceeeeCCeEeeeeecccchhhccCccccccceeeeccccc
Confidence            689999999999999999999999999999999                    888888888766               


Q ss_pred             --HHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          46 --RVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        46 --~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                        +.++.+++||+..|.+.|+.|+.++..
T Consensus       291 ~~~~~~~l~~el~~~m~~~G~~~i~el~~  319 (336)
T 1ypf_A          291 LEDTLIEMEQDLQSSISYAGGTKLDSIRT  319 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTSSBGGGGGG
T ss_pred             HHHHHHHHHHHHHHHHHHhCcccHHHhCc
Confidence              899999999999999999999999865

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=99.57  E-value=2.3e-16  Score=122.26  Aligned_cols=73  Identities=22%  Similarity=0.315  Sum_probs=65.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH--------------------HHHhccC--------------HHH---
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL--------------------WGLAHSG--------------SNG---   43 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L--------------------~al~~~g--------------~~g---   43 (100)
                      +|||+||||++|.|++|||+||||+|++|++|+                    |+++..|              ++|   
T Consensus       224 ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~~~Es~~~~~~~~g~~~k~~~g~~~~~a~~~~~g~~~~~~~~~g~~~  303 (351)
T 2c6q_A          224 GHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAGHSESGGELIERDGKKYKLFYGMSSEMAMKKYAGGVAEYRASEGKTV  303 (351)
T ss_dssp             CEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSCSCEEEETTEEEEEEECTTBHHHHHHHSSSCCTTCCCCBCEE
T ss_pred             CcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhcCccCcchhhhhcCeeeeeccccccHhhhhcccccccccccccceEE
Confidence            689999999999999999999999999999998                    4444332              467   


Q ss_pred             -------HHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          44 -------AARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        44 -------v~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                             |.+.++.|+.||+..|.++|+.|+.++...
T Consensus       304 ~~~~~g~v~~~~~~l~~~l~~~m~~~G~~~i~~l~~~  340 (351)
T 2c6q_A          304 EVPFKGDVEHTIRDILGGIRSTCTYVGAAKLKELSRR  340 (351)
T ss_dssp             EEECCBCHHHHHHHHHHHHHHHHHHHTCSBGGGHHHH
T ss_pred             EeeccCcHHHHHHHHHHHHHHHHHHcCCCCHHHHhhC
Confidence                   999999999999999999999999998764

>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0

Probab=99.55  E-value=2.9e-15  Score=116.39  Aligned_cols=74  Identities=38%  Similarity=0.593  Sum_probs=69.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLE   74 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e   74 (100)
                      +|||++|||+++.|++|++++|||+|++||++++++.+.|++|+.+.++.+.+|++..|.+.|+.++.++....
T Consensus       281 ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~~~~~~G~~gv~~~~~~l~~el~~~m~~~G~~~i~el~~~~  354 (370)
T 1gox_A          281 IPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRSH  354 (370)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBTTTCCGGG
T ss_pred             CEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhhhcc
Confidence            58999999999999999999999999999999999988899999999999999999999999999998876543

>1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A*

Probab=99.51  E-value=1.1e-14  Score=113.60  Aligned_cols=74  Identities=35%  Similarity=0.464  Sum_probs=69.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLE   74 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e   74 (100)
                      +|||+||||+++.|++|++++|||+|++||++++++.+.|++++.+.++.+.+|++..|.+.|+.++.++....
T Consensus       279 ~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~~~~~~g~~~v~~~~~~l~~el~~~m~~~G~~~i~el~~~~  352 (380)
T 1p4c_A          279 KPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDY  352 (380)
T ss_dssp             SCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGGG
T ss_pred             CeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhccCe
Confidence            38999999999999999999999999999999999888899999999999999999999999999999887653

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=99.49  E-value=1.2e-14  Score=116.67  Aligned_cols=73  Identities=18%  Similarity=0.204  Sum_probs=62.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhc--------------------cCH-------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAH--------------------SGS-------------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~--------------------~g~-------------------   41 (100)
                      +|||+||||++|.|++|||+||||+|++|++|+.+-.+                    .++                   
T Consensus       353 ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~~~~E~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~eg  432 (503)
T 1me8_A          353 IPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFEEG  432 (503)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSHHHHCC--------------CC
T ss_pred             ceEEEeCCCCCHHHHHHHHHcCCCEEEECchhhccccCCCceEEECCeEEEeecCccchhHhhccccccccccceecccc
Confidence            68999999999999999999999999999999732211                    111                   


Q ss_pred             --------HHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          42 --------NGAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        42 --------~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                              .+|.+.++.|..||+..|+.+|+.|+.++..+
T Consensus       433 ~~~~~~~~~~v~~~~~~~~~~l~~~m~~~G~~~i~~l~~~  472 (503)
T 1me8_A          433 VDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQSK  472 (503)
T ss_dssp             CEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred             eeEecCCCCcHHHHHHHHHHHHHHHHHhcCcchHHHHHhC
Confidence                    25789999999999999999999999998763

>1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A*

Probab=99.45  E-value=8.1e-14  Score=123.48  Aligned_cols=71  Identities=17%  Similarity=0.128  Sum_probs=66.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------------------------CHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------------------------GSNGAARVLQSLVH   53 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------------------------g~~gv~~~i~~l~~   53 (100)
                      +|||+||||+||.||+||++||||+|++||+||++++|.                           ++++|.++++.+.+
T Consensus      1100 IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~algc~~~r~Ch~~~CP~Gvatqdp~L~~~~~gg~e~V~n~l~~l~~ 1179 (1520)
T 1ofd_A         1100 VLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKGVPGQVVNFFYFIAE 1179 (1520)
T ss_dssp             CEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHHHHHHHHHHHhccCCCCCceeEeeCHHHHhhcCCcHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999998653                           68899999999999


Q ss_pred             HHhHHHHhcccccHHHhh
Q psy7649          54 KILPEAVADKVHNAYSIF   71 (100)
Q Consensus        54 el~~~m~l~g~~n~~~l~   71 (100)
                      ||+..|...|+.++.++.
T Consensus      1180 ELr~~Ma~lG~~si~eL~ 1197 (1520)
T 1ofd_A         1180 EVRSLLAHLGYRSLDDII 1197 (1520)
T ss_dssp             HHHHHHHHHTCSCGGGTT
T ss_pred             HHHHHHHHhCCCCHHHHh
Confidence            999999999999999985

>1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A*

Probab=99.44  E-value=1.1e-13  Score=122.43  Aligned_cols=71  Identities=18%  Similarity=0.266  Sum_probs=66.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------------------------CHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------------------------GSNGAARVLQSLVH   53 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------------------------g~~gv~~~i~~l~~   53 (100)
                      +|||+||||+||.||+||++||||+|++||+||++++|.                           ++++|.++++.+.+
T Consensus      1065 VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL~a~gc~~~r~Ch~~~CP~Gvatqdp~l~~~~~gg~e~V~n~l~~l~~ 1144 (1479)
T 1ea0_A         1065 VRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVGTPEKVVNLFTFLAE 1144 (1479)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCCCHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHHHHHHHHHHhhccCCCCCceeEEeCHHHHhhcCCchHHHHHHHHHHHH
Confidence            689999999999999999999999999999999998653                           68999999999999


Q ss_pred             HHhHHHHhcccccHHHhh
Q psy7649          54 KILPEAVADKVHNAYSIF   71 (100)
Q Consensus        54 el~~~m~l~g~~n~~~l~   71 (100)
                      ||+..|...|+.++.++.
T Consensus      1145 ELr~~Ma~lG~~si~eL~ 1162 (1479)
T 1ea0_A         1145 EVREILAGLGFRSLNEVI 1162 (1479)
T ss_dssp             HHHHHHHHHTCSCSGGGT
T ss_pred             HHHHHHHHhCCCCHHHHh
Confidence            999999999999999973

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=99.38  E-value=5.5e-14  Score=112.03  Aligned_cols=88  Identities=25%  Similarity=0.235  Sum_probs=69.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH--------------------------HHhc-------c---C----
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW--------------------------GLAH-------S---G----   40 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~--------------------------al~~-------~---g----   40 (100)
                      +|||+||||+++.|++|||+||||+|++|++|+.                          ++..       .   +    
T Consensus       329 vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~r~~~g~~~~~~~  408 (486)
T 2cu0_A          329 LYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRK  408 (486)
T ss_dssp             CEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSC
T ss_pred             CcEEecCCCCCHHHHHHHHHcCCCceeeChhhhcCccCchhheeeCCcEEEEeecCCCHHHHhccccccccccccccccc
Confidence            5899999999999999999999999999999994                          2210       0   0    


Q ss_pred             --HHH----------HHHHHHHHHHHHhHHHHhcccccHHHhhHHHH-----HHHHHHcCcCCCC
Q psy7649          41 --SNG----------AARVLQSLVHKILPEAVADKVHNAYSIFFLEL-----NNLVPTLLLGSIQ   88 (100)
Q Consensus        41 --~~g----------v~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~-----~e~~~~lG~~s~~   88 (100)
                        ++|          +...++.|..+|+..|...|+.++.+++....     ...+.+-+..++.
T Consensus       409 ~~~~g~~~~~~~~~~~~~~~~~l~~~lr~~m~~~G~~~~~~l~~~~~~~~~~~~~~~e~~~~~~~  473 (486)
T 2cu0_A          409 FVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKEKGEFVIITHAGIKESHPHDII  473 (486)
T ss_dssp             SSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHHCCEEECCHHHHHHHSCCSSC
T ss_pred             ccccceEEeecccCCHHHHHHHHHHHHHHhcccCCcCCHHHHHhhCCEEEEcccccccCCCcccc
Confidence              234          88999999999999999999999999987533     2334444444444

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=99.36  E-value=9.9e-13  Score=102.57  Aligned_cols=73  Identities=25%  Similarity=0.323  Sum_probs=60.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH--------------------Hh-----------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG--------------------LA-----------------------   37 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a--------------------l~-----------------------   37 (100)
                      +|||++|||+++.|++|++++|||+|.+||+|+.+                    ++                       
T Consensus       257 ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~~~g~~~~g~~~~~~~g~~~~~~~  336 (404)
T 1eep_A          257 ICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKK  336 (404)
T ss_dssp             CEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC----------------------------
T ss_pred             ceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhcCCCCCcchhhhCCeEEeecCCCCCHHHHhhccccchhccccccccc
Confidence            68999999999999999999999999999999632                    21                       


Q ss_pred             --ccCHHH-------HHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          38 --HSGSNG-------AARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        38 --~~g~~g-------v~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                        ..|.++       |.++++.+.+|++..|.+.|+.|+.++...
T Consensus       337 l~~~g~~~~v~~~~~v~~~~~~l~~el~~~m~~~G~~~i~~l~~~  381 (404)
T 1eep_A          337 LVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKIN  381 (404)
T ss_dssp             --------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHS
T ss_pred             ccCceeEEeccCCccHHHHHHHHHHHHHHHHHHhCCCCHHHHhhc
Confidence              123333       889999999999999999999999998753

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=99.34  E-value=6e-14  Score=109.00  Aligned_cols=72  Identities=21%  Similarity=0.238  Sum_probs=57.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHh-----------ccC---HHHHH--------------HHH----
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLA-----------HSG---SNGAA--------------RVL----   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~-----------~~g---~~gv~--------------~~i----   48 (100)
                      +|||+||||+++.|++||+++|||+|++||+|+....           +.|   ++|+.              +.+    
T Consensus       278 ipvia~GGI~~~~dv~kalalGA~~V~iG~~~l~~~es~~~~~~~g~~~~~~~~~~Gv~~~~~~~~~~~~~~~~~~~g~~  357 (393)
T 2qr6_A          278 VHIIADGSIENSGDVVKAIACGADAVVLGSPLARAEEAAGKGYFWPAVAAHPRFPRGVVTESVDLDEAAPSLEQILHGPS  357 (393)
T ss_dssp             CEEEECSSCCSHHHHHHHHHHTCSEEEECGGGGGSTTCTTTTEECCGGGGCSSSCCCCCEECC----CCCCHHHHHHCCC
T ss_pred             eEEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCCCCCCceEEEecccCcccCCCccccccccccccchhHHHHhccch
Confidence            6899999999999999999999999999999755443           322   13432              222    


Q ss_pred             ------HHHHHHHhHHHHhcccccHHHhhH
Q psy7649          49 ------QSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        49 ------~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                            ..|++||+..|.++|+.|+.++..
T Consensus       358 ~~~~~~~~l~~el~~~m~~~G~~~i~el~~  387 (393)
T 2qr6_A          358 TMPWGVENFEGGLKRALAKCGYTDLKSFQK  387 (393)
T ss_dssp             SCTTSSSCHHHHHHHHHHHHTCSBHHHHTT
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCCCHHHHhh
Confidence                  256899999999999999998865

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=99.32  E-value=4.9e-13  Score=107.78  Aligned_cols=73  Identities=25%  Similarity=0.280  Sum_probs=62.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS---------------------------------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~---------------------------------------   41 (100)
                      +|||+||||+++.|++||+++|||+|++|++|+.+..+.|+                                       
T Consensus       360 iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~~~es~g~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~  439 (511)
T 3usb_A          360 IPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAGVAESPGETEIYQGRQFKVYRGMGSVGAMEKGSKDRYFQEGNKKLVP  439 (511)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCEEECSSSEEEC----------------------------
T ss_pred             CcEEEeCCCCCHHHHHHHHHhCchhheecHHHhcCccCchhhhhccCeeeeeeeccccHHHHhcccccchhccccccccC
Confidence            68999999999999999999999999999998655444332                                       


Q ss_pred             HH----------HHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          42 NG----------AARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        42 ~g----------v~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                      +|          +.+.++.|..+|+..|..+|+.|+.+++..
T Consensus       440 eG~~~~~~~~~~~~~~~~~~~~~lr~~m~~~G~~~i~~l~~~  481 (511)
T 3usb_A          440 EGIEGRVPYKGPLADTVHQLVGGLRAGMGYCGAQDLEFLREN  481 (511)
T ss_dssp             ------CBCCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred             CCcEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhC
Confidence            22          668899999999999999999999998873

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=99.30  E-value=1.5e-12  Score=103.47  Aligned_cols=74  Identities=28%  Similarity=0.386  Sum_probs=61.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH--------------------HHhc-----cC--------------H
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW--------------------GLAH-----SG--------------S   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~--------------------al~~-----~g--------------~   41 (100)
                      +|||+||||+++.|++||+++|||+|++||+|+.                    ++++     .|              +
T Consensus       341 ipvia~GGI~~~~di~kala~GAd~V~iGr~~l~~~e~~~~~~~~~~~~~k~~~g~~~~~a~~~g~~~~~~~~~~~~~~~  420 (494)
T 1vrd_A          341 VPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVP  420 (494)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC-----------------------
T ss_pred             CCEEEECCcCCHHHHHHHHHcCCCEEEECHHHhcCCcCCcceEEECCEEEEEEeccchHHHHhhccccchhhcccccccC
Confidence            6899999999999999999999999999999973                    1110     00              3


Q ss_pred             HH----------HHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649          42 NG----------AARVLQSLVHKILPEAVADKVHNAYSIFFLE   74 (100)
Q Consensus        42 ~g----------v~~~i~~l~~el~~~m~l~g~~n~~~l~~~e   74 (100)
                      +|          +..+++.+..+|+..|...|+.++.+++...
T Consensus       421 ~g~~~~~~~~~~v~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~  463 (494)
T 1vrd_A          421 EGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEKA  463 (494)
T ss_dssp             --CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHC
T ss_pred             CcceEccCcCCCHHHHHHHHHHHHHHHhhhcCCCCHHHHHhhC
Confidence            44          6799999999999999999999999998753

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=99.28  E-value=2.1e-12  Score=103.32  Aligned_cols=73  Identities=21%  Similarity=0.253  Sum_probs=59.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH--------------------Hh------c---------------c
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG--------------------LA------H---------------S   39 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a--------------------l~------~---------------~   39 (100)
                      +|||++|||+++.|+.||+++|||+|++|++|+..                    +.      .               .
T Consensus       359 ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~~e~~~~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~  438 (514)
T 1jcn_A          359 VPIIADGGIQTVGHVVKALALGASTVMMGSLLAATTEAPGEYFFSDGVRLKKYRGMGSLDAMEKSSSSQKRYFSEGDKVK  438 (514)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTSTTSSCC---------------------------------------
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcCCcCCcceEeECCEEEEEecCcCCHHHHhhccccchhhccccccce
Confidence            68999999999999999999999999999988642                    11      0               1


Q ss_pred             CHHHH----------HHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          40 GSNGA----------ARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        40 g~~gv----------~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                      +++|+          .+.++.|..||+..|..+|++|+.++...
T Consensus       439 ~~~gv~~~~~~~g~~~~~i~~l~~~l~~~m~~~G~~~i~~l~~~  482 (514)
T 1jcn_A          439 IAQGVSGSIQDKGSIQKFVPYLIAGIQHGCQDIGARSLSVLRSM  482 (514)
T ss_dssp             -----------CCCHHHHHHHHHHHHHHHHHHHTCSBHHHHHHH
T ss_pred             ecccceecCCCcccHHHHHHHHHHHHHHHHHhhCcccHHHHHhh
Confidence            34666          89999999999999999999999998764

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=99.26  E-value=8.6e-13  Score=104.56  Aligned_cols=74  Identities=20%  Similarity=0.314  Sum_probs=62.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH--------------------------HHhc-------cC-------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW--------------------------GLAH-------SG-------   40 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~--------------------------al~~-------~g-------   40 (100)
                      +|||+||||+++.|++||+++|||+|.+|++|+.                          ++..       .|       
T Consensus       337 ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~~~e~~~~~~~~~g~~~k~~~g~~~~~a~~~~~~~~~~~g~~~~~~~  416 (491)
T 1zfj_A          337 KTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANK  416 (491)
T ss_dssp             CEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CC
T ss_pred             CCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhCCCcCcceEEEECCEEEEEEecccCHHHHhccccccccccccccccc
Confidence            5899999999999999999999999999999983                          2110       00       


Q ss_pred             --HHH----------HHHHHHHHHHHHhHHHHhcccccHHHhhHHH
Q psy7649          41 --SNG----------AARVLQSLVHKILPEAVADKVHNAYSIFFLE   74 (100)
Q Consensus        41 --~~g----------v~~~i~~l~~el~~~m~l~g~~n~~~l~~~e   74 (100)
                        ++|          +.+.++.|..|++..|...|+.++.+++...
T Consensus       417 ~~~~g~~~~~~~~~~~~~~~~~l~~~l~~~~~~~G~~~~~~l~~~~  462 (491)
T 1zfj_A          417 LVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHENA  462 (491)
T ss_dssp             CCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHC
T ss_pred             cCcCcceEecCcCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHhcC
Confidence              233          8999999999999999999999999998743

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=99.05  E-value=4.4e-11  Score=96.11  Aligned_cols=72  Identities=22%  Similarity=0.254  Sum_probs=62.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS---------------------------------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~---------------------------------------   41 (100)
                      +|||+||||+++.|++||+++|||+|.+|+.|+..-.+.|+                                       
T Consensus       335 iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~t~Espg~~~~~~g~~~k~~~gm~s~~a~~~~~~~r~~~~~~~~~~~  414 (496)
T 4fxs_A          335 IPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKL  414 (496)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSHHHHHSSSCCSTTTC---CCCC
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhcCCCCCcceeeeCCeEeeeecccchHHHHhccccccccccccccccc
Confidence            68999999999999999999999999999998765433221                                       


Q ss_pred             ------------HHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          42 ------------NGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        42 ------------~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                                  ..+.+.+..|...|+..|...|++|+.++..
T Consensus       415 ~~eg~~~~v~~~g~~~~~~~~~~~~l~~~~~~~g~~~i~~l~~  457 (496)
T 4fxs_A          415 VPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRT  457 (496)
T ss_dssp             CCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHH
T ss_pred             cCCccEEeCCCCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHh
Confidence                        1466889999999999999999999999986

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=99.03  E-value=4.8e-11  Score=95.69  Aligned_cols=72  Identities=19%  Similarity=0.245  Sum_probs=60.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC----------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG----------------------------------------   40 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g----------------------------------------   40 (100)
                      +|||++|||+++.|++||+++|||+|++|+.|+..-.+.+                                        
T Consensus       333 iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~~~Esp~~~~~~~g~~~k~~~gm~s~~a~~~~~~~~~r~~~~~~~~~  412 (490)
T 4avf_A          333 VPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGTEEAPGEIELFQGRSYKSYRGMGSLGAMSGSQGSSDRYFQDASAGA  412 (490)
T ss_dssp             CCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTTBTTSSSCEEEETTEEEEC----------------------------
T ss_pred             CcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhcCCCCCCceEeECCeEeeeecCcccHHHHhhcccccchhhccccccc
Confidence            6899999999999999999999999999998865322110                                        


Q ss_pred             ----HH----------HHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          41 ----SN----------GAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        41 ----~~----------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                          ++          .+.+.+..|..+|+..|...|++|+.++..
T Consensus       413 ~~~~~eg~~~~v~~~g~~~~~~~~~~~~lr~~~~~~g~~~i~~l~~  458 (490)
T 4avf_A          413 EKLVPEGIEGRVPYKGALSAIVHQLMGGLRAAMGYTGSADIQQMRT  458 (490)
T ss_dssp             -----------CBCCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             ccccCCCcEEcCCcCCCHHHHHHHHHHHHHHHHHhcCcCcHHHHHh
Confidence                12          345889999999999999999999999876

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=98.94  E-value=2.2e-10  Score=89.52  Aligned_cols=71  Identities=17%  Similarity=0.333  Sum_probs=60.1

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH----------------------------------------
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS----------------------------------------   41 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~----------------------------------------   41 (100)
                      |||+||||+++.|++|||++|||+|++||+|+..-.+.++                                        
T Consensus       201 PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t~Espg~~~~~~~g~~~k~y~Gm~s~~~~~~~~~~~~~~~~~eG~~~  280 (361)
T 3r2g_A          201 SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGSAPTPGEVFQKDDGSKVKRYRGMASREAQEAFLGQMHEWKTAEGVAT  280 (361)
T ss_dssp             EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTBTTSSSCEEECTTSCEEEEESCCHHHHHHHHHTTCCSTTCCSCCCCE
T ss_pred             CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccCCceeEEecCCeEEEEEecCCCcchhhhhhccccccccCCccee
Confidence            8999999999999999999999999999999865332110                                        


Q ss_pred             -----HHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          42 -----NGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        42 -----~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                           -.+.+.+..+...|+..|.-+|+.|+.++.+
T Consensus       281 ~v~~~g~~~~~~~~~~~glr~~m~y~G~~~i~~l~~  316 (361)
T 3r2g_A          281 EVPFKENPDGIIADIIGGLRSGLTYAGADSISELQR  316 (361)
T ss_dssp             EEECBCCHHHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             ecCCCCCHHHHHHHHHHHHHHHhhhcCcccHHHHHh
Confidence                 1366778899999999999999999999855

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=98.92  E-value=7.2e-10  Score=83.16  Aligned_cols=62  Identities=26%  Similarity=0.280  Sum_probs=52.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSI   70 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l   70 (100)
                      +||+++|||+|+.|+.++++.|||+|++||++++    .++    ..++.++++++..|...|+.++.++
T Consensus       245 ipvi~~GGI~~~~da~~~l~~GAd~V~ig~~~l~----~~p----~~~~~i~~~l~~~~~~~g~~~i~~~  306 (314)
T 2e6f_A          245 KLVFGCGGVYSGEDAFLHILAGASMVQVGTALQE----EGP----GIFTRLEDELLEIMARKGYRTLEEF  306 (314)
T ss_dssp             SEEEEESSCCSHHHHHHHHHHTCSSEEECHHHHH----HCT----THHHHHHHHHHHHHHHHTCCSSTTT
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEEEEchhhHh----cCc----HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            6899999999999999999999999999999996    244    3566777788877877777777665

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=98.90  E-value=1.5e-09  Score=81.40  Aligned_cols=63  Identities=17%  Similarity=0.317  Sum_probs=53.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +||+++|||+|+.|+.++++.|||+|.+||++++    .++    ..++.++++++..|...|+.++.++.
T Consensus       243 ipvi~~GGI~~~~da~~~l~~GAd~V~vg~~~l~----~~p----~~~~~i~~~l~~~l~~~g~~si~e~~  305 (311)
T 1jub_A          243 IQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK----EGP----AIFDRIIKELEEIMNQKGYQSIADFH  305 (311)
T ss_dssp             SEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH----HCT----HHHHHHHHHHHHHHHHHTCCSGGGTT
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEEEEchHHHh----cCc----HHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            6899999999999999999999999999999996    344    35667778888888888888877753

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.88  E-value=4.7e-10  Score=91.74  Aligned_cols=73  Identities=18%  Similarity=0.218  Sum_probs=59.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC-------------------------H--------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG-------------------------S--------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g-------------------------~--------------   41 (100)
                      +|||+||||+++.||+||||+|||+|++|+.|--.-.+.|                         +              
T Consensus       385 vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt~EsPGe~~~~~G~~~K~YrGMgS~~Am~~~~~~~~~~~~~~~~~~  464 (556)
T 4af0_A          385 IPCIADGGIGNIGHIAKALALGASAVMMGGLLAGTTESPGEYFYHEGKRVKVYRGMGSIEAMEHTQRGSASGKRSILGLD  464 (556)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHTTC------------CCS
T ss_pred             CCEEecCCcCcchHHHHHhhcCCCEEEEchhhccccCCCCcEEEECCEEEEeecccccHHHHHhcccCCccccccccccc
Confidence            6899999999999999999999999999987742211110                         0              


Q ss_pred             -----------------H----------HHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          42 -----------------N----------GAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        42 -----------------~----------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                                       +          .+.+.+..+...|+..|.-.|++|+.++...
T Consensus       465 ~~s~dRyfq~~~~~~v~EGveg~VpykG~v~~~i~~l~gGlrs~m~y~Ga~~i~el~~~  523 (556)
T 4af0_A          465 NAATARYFSEADAVKVAQGVSGDVADKGSINKFVPYLFTGLQHSLQDAAIKSVSELHSC  523 (556)
T ss_dssp             CSSEEECCCBSSSSCBCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             ccchhhhcccccccccCCccEEeccCCCcHHHHHHHHHHHHHHhhhccCCCcHHHHHHh
Confidence                             0          2677888899999999999999999998775

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=98.83  E-value=3.8e-09  Score=78.50  Aligned_cols=64  Identities=20%  Similarity=0.202  Sum_probs=55.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                      +|||++|||+++.|+.+++++|||.|.+||+++.     +++    .++.++++++..|...|..++.++...
T Consensus       242 ipvia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~-----~p~----~~~~i~~~l~~~~~~~g~~~~~~~~g~  305 (311)
T 1ep3_A          242 IPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA-----DPF----VCPKIIDKLPELMDQYRIESLESLIQE  305 (311)
T ss_dssp             SCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH-----CTT----HHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             CCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHc-----CcH----HHHHHHHHHHHHHHHcCCCCHHHHhCh
Confidence            5899999999999999999999999999999986     332    456777888899999999999887643

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=98.74  E-value=2.7e-09  Score=83.24  Aligned_cols=72  Identities=22%  Similarity=0.254  Sum_probs=59.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC-------------------------------HH-------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG-------------------------------SN-------   42 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g-------------------------------~~-------   42 (100)
                      +|||++|||+++.|++||+++|||.|++|+.|+..-.+.+                               ++       
T Consensus       212 iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t~Esp~~~~~~~g~~~k~y~gm~s~~am~~~~~~ry~~~~~~~~~~  291 (366)
T 4fo4_A          212 IPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGTEEAPGEVILYQGRSYKAYRGMGSLGAMSKGSSDRYFQTDNAADKL  291 (366)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEEETTEEEEEEECTTSHHHHCC---------------C
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcCCCCCchhhhhCCceeEEeeccccHHHHhcccccchhccccccccc
Confidence            6899999999999999999999999999999886443211                               00       


Q ss_pred             -------------HHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          43 -------------GAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        43 -------------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                                   .+.+.+..+...|+..|.-.|++|+.++..
T Consensus       292 ~~eg~~~~v~~~g~~~~~~~~~~~glr~~~~y~g~~~~~~~~~  334 (366)
T 4fo4_A          292 VPEGIEGRIAYKGHLKEIIHQQMGGLRSCMGLTGSATVEDLRT  334 (366)
T ss_dssp             CCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHHTCSBHHHHHH
T ss_pred             cCCCcEEecCCCCCHHHHHHHHHHHHHHhhhccCcccHHHHHh
Confidence                         244667788899999999999999999876

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=98.71  E-value=7.2e-09  Score=80.52  Aligned_cols=73  Identities=23%  Similarity=0.269  Sum_probs=58.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC----------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG----------------------------------------   40 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g----------------------------------------   40 (100)
                      +|||++|||+++.|+.|++++|||.|++|+.|+..-.+.+                                        
T Consensus       208 iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t~Esp~~~~~~~g~~~k~y~gm~s~~a~~~~~~~~y~~~~~~~~~~  287 (361)
T 3khj_A          208 IPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKM  287 (361)
T ss_dssp             CCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTBTTSSCEEEEETTEEEEEC---------------------------
T ss_pred             CeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcCCcCCcchhhcCCeEEEEeeccchHHHHhccchhhhhccccccccc
Confidence            5899999999999999999999999999998876432211                                        


Q ss_pred             -HH----------HHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          41 -SN----------GAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        41 -~~----------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                       ++          .+.+.+..+...|+..|.-.|++|+.++..+
T Consensus       288 ~~eg~~~~v~~~g~~~~~~~~~~~gl~~~~~~~g~~~~~~~~~~  331 (361)
T 3khj_A          288 VPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK  331 (361)
T ss_dssp             ------CEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             CCCccEEeCCCCCCHHHHHHHHHHHHHHhhhhcCCccHHHHHhC
Confidence             11          1335567788889999999999999888763

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=98.69  E-value=4.7e-09  Score=82.87  Aligned_cols=73  Identities=25%  Similarity=0.302  Sum_probs=57.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC----------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG----------------------------------------   40 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g----------------------------------------   40 (100)
                      +|||++|||+++.|++|++++|||+|.+|+.|+..-.+.+                                        
T Consensus       247 IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t~Es~~~~~~~~g~~~k~y~Gm~s~~am~~~~~~ry~~~~~~~~~~  326 (400)
T 3ffs_A          247 IPIIADGGIRYSGDIGKALAVGASSVMIGSILAGTEESPGEKELIGDTVYKYYRGMGSVGAMKSGSGDRYFQEKRPENKM  326 (400)
T ss_dssp             CCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTBTTSSCCEEESSSSEEEC----------------------------
T ss_pred             CCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcCCCCCchhhhcCCeeeeeecCcchHHHHhccccchhhccccccccc
Confidence            6899999999999999999999999999999876433211                                        


Q ss_pred             -HHH----------HHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          41 -SNG----------AARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        41 -~~g----------v~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                       ++|          +.+.+..+...|+..|.-.|++|+.++..+
T Consensus       327 ~~eG~~~~v~~~g~~~~~~~~~~~glr~~~~y~G~~~i~el~~~  370 (400)
T 3ffs_A          327 VPEGIEGRVKYKGEMEGVVYQLVGGLRSCMGYLGSASIEELWKK  370 (400)
T ss_dssp             -------CEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             CCCCcEEecCCCCCHHHHHHHHHHHHHHhhhhcCcccHHHHHhC
Confidence             111          235567788889999999999999888763

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=98.69  E-value=2.5e-08  Score=77.67  Aligned_cols=63  Identities=17%  Similarity=0.207  Sum_probs=54.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||++|||+|+.|+.+++..|||+|.+||++++    .|+.    .++.+.+++...|...|+.++.++.
T Consensus       299 ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~----~gP~----~~~~i~~~l~~~m~~~G~~~i~e~~  361 (367)
T 3zwt_A          299 VPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF----WGPP----VVGKVKRELEALLKEQGFGGVTDAI  361 (367)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH----HCTH----HHHHHHHHHHHHHHHTTCSSHHHHT
T ss_pred             ceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHh----cCcH----HHHHHHHHHHHHHHHcCCCCHHHhh
Confidence            6899999999999999999999999999999986    2443    4566778888899999999998875

>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*

Probab=98.67  E-value=1.5e-08  Score=78.72  Aligned_cols=63  Identities=22%  Similarity=0.300  Sum_probs=53.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||++|||+|+.|+.+++..|||+|.+||.+++    .|+.    .++.+.++|+..|...|+.++.++.
T Consensus       278 ipII~~GGI~s~~da~~~l~aGAd~V~vgra~l~----~GP~----~~~~i~~~l~~~m~~~G~~si~el~  340 (354)
T 4ef8_A          278 KLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQE----EGPS----IFERLTSELLGVMAKKRYQTLDEFR  340 (354)
T ss_dssp             SEEEEESCCCSHHHHHHHHHHTEEEEEECHHHHH----HCTT----HHHHHHHHHHHHHHHHTCCSGGGTT
T ss_pred             CCEEEECCcCCHHHHHHHHHcCCCEEEEhHHHHH----hCHH----HHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            6899999999999999999999999999999985    3443    4566778888888888888887764

>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans}

Probab=98.65  E-value=2.9e-08  Score=76.88  Aligned_cols=63  Identities=19%  Similarity=0.317  Sum_probs=52.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||++|||+|+.|+.+++..|||+|.+||+|++.    ++.    .++.+.++|+..|...|..++.++.
T Consensus       276 ipIIg~GGI~s~~da~~~l~aGAd~V~igra~~~~----gP~----~~~~i~~~L~~~l~~~G~~si~e~~  338 (345)
T 3oix_A          276 IQIIGTGGVXTGRDAFEHILCGASMVQIGTALHQE----GPQ----IFKRITKELXAIMTEKGYETLEDFR  338 (345)
T ss_dssp             SEEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHH----CTH----HHHHHHHHHHHHHHHHTCCSGGGTT
T ss_pred             CcEEEECCCCChHHHHHHHHhCCCEEEEChHHHhc----ChH----HHHHHHHHHHHHHHHcCCCCHHHHH
Confidence            68999999999999999999999999999997752    443    4566778888888888888887753

>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A*

Probab=98.65  E-value=1.7e-08  Score=80.14  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=49.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSI   70 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l   70 (100)
                      +|||++|||+|+.|+.+++..|||+|.+||++++.    |+.    .++.+.++|+..|...|+.++.++
T Consensus       346 iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~~----GP~----~~~~i~~~L~~~l~~~G~~si~e~  407 (415)
T 3i65_A          346 IPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEA  407 (415)
T ss_dssp             SCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHHH----GGG----HHHHHHHHHHHHHHHTTCSSSTTT
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc----CHH----HHHHHHHHHHHHHHHcCCCCHHHH
Confidence            68999999999999999999999999999999863    442    344566677666666666666554

>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1

Probab=98.65  E-value=1.6e-08  Score=80.64  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=51.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||++|||+|+.|+.++++.|||+|.+||++++.    ++    ..++.+++++...|...|+.++.++.
T Consensus       374 iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall~~----gP----~l~~~i~~~l~~~l~~~G~~si~e~~  436 (443)
T 1tv5_A          374 IPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GM----KSAVQIKRELNHLLYQRGYYNLKEAI  436 (443)
T ss_dssp             SCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHH----GG----GHHHHHHHHHHHHHHHHTCSSSGGGT
T ss_pred             CcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHhc----Ch----HHHHHHHHHHHHHHHHhCCCCHHHHh
Confidence            68999999999999999999999999999999862    33    24556667777777778877777654

>3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A*

Probab=98.52  E-value=7.1e-08  Score=73.92  Aligned_cols=62  Identities=23%  Similarity=0.322  Sum_probs=48.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSI   70 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l   70 (100)
                      +|||.+|||.|+.|+++.+..|||+|.+++.+++    .|+.    .++.+.+||...|.-.|..++.|+
T Consensus       278 ~pIIg~GGI~s~~Da~e~i~aGAs~Vqv~Ta~~y----~GP~----~~~~I~~~L~~~L~~~G~~si~e~  339 (354)
T 3tjx_A          278 KLIFGCGGVYTGEDAFLHVLAGASMVQVGTALQE----EGPS----IFERLTSELLGVMAKKRYQTLDEF  339 (354)
T ss_dssp             SEEEEESSCCSHHHHHHHHHHTEEEEEECHHHHH----HCTT----HHHHHHHHHHHHHHHHTCCSGGGT
T ss_pred             CcEEEeCCcCCHHHHHHHHHcCCCEEEEChhhhh----cCch----HHHHHHHHHHHHHHHcCCCCHHHH
Confidence            5899999999999999999999999999999876    3543    334555666666666666666554

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=98.52  E-value=4.6e-08  Score=83.70  Aligned_cols=63  Identities=14%  Similarity=0.097  Sum_probs=54.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||++|||+|+.|+.+++++|||.|.+||++++    .+.    ..++.+.++|+..|...|..++.++.
T Consensus       788 ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~----~~~----~~~~~~~~~l~~~l~~~G~~~i~~l~  850 (1025)
T 1gte_A          788 FPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDF----TVIQDYCTGLKALLYLKSIEELQGWD  850 (1025)
T ss_dssp             CCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT----SCT----THHHHHHHHHHHHHHHTTCGGGTTSB
T ss_pred             CCEEEecCcCCHHHHHHHHHcCCCEEEEeecccc----CCc----cHHHHHHHHHHHHHHHcCCCCHHHHh
Confidence            6899999999999999999999999999999985    232    45667888999999999998777654

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=98.43  E-value=6.8e-08  Score=73.52  Aligned_cols=48  Identities=23%  Similarity=0.252  Sum_probs=44.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i   48 (100)
                      +|||++|||+++.|+.+++++|||.|.+|+.|+.+..+..++++++.+
T Consensus       177 iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~~~e~~~~~~~k~~~  224 (326)
T 3bo9_A          177 IPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVASVESDVHPVYKEKI  224 (326)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTBSSCCSCHHHHHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHhCCCEEEechHHHcCccccccHHHHHHH
Confidence            589999999999999999999999999999999988877788888876

>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1

Probab=98.38  E-value=1.6e-07  Score=71.10  Aligned_cols=34  Identities=21%  Similarity=0.223  Sum_probs=32.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||++|||+|+.|+.|++++|||+|++||++++
T Consensus       290 ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~  323 (336)
T 1f76_A          290 LPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF  323 (336)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence            6899999999999999999999999999999985

>1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1

Probab=98.35  E-value=1.7e-07  Score=70.87  Aligned_cols=65  Identities=15%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             CeEEEcCCCCChHHHHHHHH-hCcchHhhhHHHHH-----HHhcc----CH---HHHHHHHHHHHHHHhHHHHhcccc
Q psy7649           1 MEVYLDGGIRYGTDVFKAIG-LGAKYVFVGRAALW-----GLAHS----GS---NGAARVLQSLVHKILPEAVADKVH   65 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlA-LGAd~v~ig~~~L~-----al~~~----g~---~gv~~~i~~l~~el~~~m~l~g~~   65 (100)
                      +||+++|||+|+.|+.++++ .|||.|++||+++.     .....    |+   .++.+.++.+.++++..+...|..
T Consensus       184 ipVi~~GgI~s~~da~~~l~~~gad~V~iGR~~l~~P~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~  261 (318)
T 1vhn_A          184 IPTFVSGDIFTPEDAKRALEESGCDGLLVARGAIGRPWIFKQIKDFLRSGKYSEPSREEILRTFERHLELLIKTKGER  261 (318)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGTTCTTHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHHHHHHHCHH
T ss_pred             CeEEEECCcCCHHHHHHHHHcCCCCEEEECHHHHhCcchHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHHHhcCch
Confidence            68999999999999999999 89999999998753     21111    22   456778888889998888777743

>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*

Probab=98.31  E-value=2.1e-07  Score=70.38  Aligned_cols=48  Identities=19%  Similarity=0.257  Sum_probs=42.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i   48 (100)
                      +||+++|||+++.|+.+++++|||.|.+|+.|+....+...+++.+.+
T Consensus       173 iPviaaGGI~~~~~v~~al~~GAdgV~vGs~~~~~~e~~~~~~~k~~~  220 (328)
T 2gjl_A          173 VPIIASGGFADGRGLVAALALGADAINMGTRFLATRECPIHPAVKAAI  220 (328)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHTSSSSCSCHHHHHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHcCccccccHHHHHHH
Confidence            589999999999999999999999999999999887776677777665

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=98.26  E-value=4e-07  Score=69.19  Aligned_cols=49  Identities=22%  Similarity=0.234  Sum_probs=43.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQ   49 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~   49 (100)
                      +||+++|||.++.|+.+++++|||.|.+|+.|+..-.+...+++++.+.
T Consensus       163 iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~~~e~~~~~~~k~~~~  211 (332)
T 2z6i_A          163 IPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVVAKESNAHPNYKEKIL  211 (332)
T ss_dssp             SCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTBTTCCSCHHHHHHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhcCccccccHHHHHHHH
Confidence            5899999999999999999999999999999998776666677776663

>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*

Probab=97.96  E-value=2.6e-06  Score=65.42  Aligned_cols=48  Identities=25%  Similarity=0.289  Sum_probs=39.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVL   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i   48 (100)
                      +||+++|||+++.|+.+++++|||.|.+|+.|+..-.+...++..+.+
T Consensus       209 iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~~~~~~~k~~i  256 (369)
T 3bw2_A          209 IPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDESGAPGPHKRAL  256 (369)
T ss_dssp             SCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTCCCCHHHHHHT
T ss_pred             ceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCcccCccHHHHHHH
Confidence            589999999999999999999999999999998764444445555443

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=97.85  E-value=4.2e-05  Score=55.85  Aligned_cols=56  Identities=21%  Similarity=0.217  Sum_probs=43.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhc-cCHHHHHHHHHHHHHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAH-SGSNGAARVLQSLVHKIL   56 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~-~g~~gv~~~i~~l~~el~   56 (100)
                      +||+++|||.|+.++.+.+..|||.|.+|+.+...... ..++...+.+..+.++++
T Consensus       202 ~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~~~~~~~~~~~~~~~~~~~~~l~  258 (262)
T 1rd5_A          202 KPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMK  258 (262)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHHHHHH
T ss_pred             CeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhHHHhccChhHHHHHHHHHHHHHH
Confidence            58999999999999999999999999999999988753 233333445555555554

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=97.84  E-value=9.2e-06  Score=57.54  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=31.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||+|+.|+.++++.|||.|.+|+.+..
T Consensus       176 ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~  209 (223)
T 1y0e_A          176 AKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR  209 (223)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred             CCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC
Confidence            5899999999999999999999999999998653

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=97.81  E-value=2.1e-05  Score=57.47  Aligned_cols=34  Identities=29%  Similarity=0.192  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||.|+.|+.+++.+|||.|.+|+.++.
T Consensus       182 ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~  215 (232)
T 3igs_A          182 CRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR  215 (232)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred             CcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC
Confidence            6899999999999999999999999999988873

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=97.79  E-value=1.8e-05  Score=56.91  Aligned_cols=54  Identities=24%  Similarity=0.271  Sum_probs=41.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      +|++++|||+++.|+.+.+..|||.|.+|+.+........ +.+.++++.+++.+
T Consensus       192 ~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~~~~~~-~~~~~~~~~~~~~~  245 (248)
T 1geq_A          192 NKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKG-REATEFLKKKVEEL  245 (248)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHG-GGCHHHHHHHHHHH
T ss_pred             CCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhhHhhCh-HHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999987753222 44555555554443

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=97.77  E-value=1.3e-05  Score=58.50  Aligned_cols=34  Identities=29%  Similarity=0.172  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+|++|||.|+.|+.+++.+|||.|.+|+.+..
T Consensus       182 ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~  215 (229)
T 3q58_A          182 CRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR  215 (229)
T ss_dssp             CCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcC
Confidence            6899999999999999999999999999988874

>2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G*

Probab=97.76  E-value=3.9e-06  Score=76.80  Aligned_cols=48  Identities=10%  Similarity=0.126  Sum_probs=43.6

Q ss_pred             CeEEEcCCCCChHHHHHHH-----------HhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAI-----------GLGAKYVFVGRAALWGLAHSGSNGAARVL   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAl-----------ALGAd~v~ig~~~L~al~~~g~~gv~~~i   48 (100)
                      +|||++|||.+|.|++++|           +||||.|.+|+.|+.+-.+.-.+.+++.+
T Consensus       756 ipviaaGGI~~g~~i~aaltg~ws~~~g~palGAdgV~~GT~f~~t~Ea~~s~~~K~~l  814 (2060)
T 2uva_G          756 IVLVAGSGFGGSEDTYPYLTGSWSTKFGYPPMPFDGCMFGSRMMTAKEAHTSKQAKQAI  814 (2060)
T ss_dssp             EEEEEESSCCSHHHHHHHHHTCGGGTTTSCCCCCSCEEESGGGGGBTTSCCCHHHHHHH
T ss_pred             CCEEEeCCCCCHHHHHHHhcCcchhhcCCCCCCCCEEEEchhhhcCcCCCCCHHHHHHH
Confidence            5899999999999999999           99999999999999887777777777766

>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1

Probab=97.76  E-value=1.7e-05  Score=59.81  Aligned_cols=34  Identities=26%  Similarity=0.410  Sum_probs=32.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||++|||.+|.|+.+|+.||||.|.+|+.+..
T Consensus       188 vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~  221 (265)
T 1wv2_A          188 VPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAH  221 (265)
T ss_dssp             SCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence            5899999999999999999999999999998864

>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}

Probab=97.71  E-value=1.4e-05  Score=60.38  Aligned_cols=34  Identities=24%  Similarity=0.283  Sum_probs=32.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||++|||.+|.|+++|+.||||.|.+|+.+..
T Consensus       179 vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~  212 (268)
T 2htm_A          179 PPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAE  212 (268)
T ss_dssp             SCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHT
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhC
Confidence            5899999999999999999999999999998874

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=97.66  E-value=2e-05  Score=60.51  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=31.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|||++|||+|+.|+.++++ |||.|++||+++.
T Consensus       198 iPVianGgI~s~eda~~~l~-GaD~V~iGRa~l~  230 (350)
T 3b0p_A          198 LTFVTNGGIRSLEEALFHLK-RVDGVMLGRAVYE  230 (350)
T ss_dssp             SEEEEESSCCSHHHHHHHHT-TSSEEEECHHHHH
T ss_pred             CeEEEECCcCCHHHHHHHHh-CCCEEEECHHHHh
Confidence            68999999999999999999 9999999999974

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=97.66  E-value=3.2e-05  Score=55.28  Aligned_cols=34  Identities=26%  Similarity=0.292  Sum_probs=31.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||+|+.|+.+.+..|||.|.+|+.++.
T Consensus       187 ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~  220 (234)
T 1yxy_A          187 IAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR  220 (234)
T ss_dssp             CCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC
T ss_pred             CCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC
Confidence            5899999999999999999999999999998764

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=97.64  E-value=0.00012  Score=54.01  Aligned_cols=56  Identities=20%  Similarity=0.141  Sum_probs=42.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc--CHHHHHHHHHHHHHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS--GSNGAARVLQSLVHKIL   56 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~--g~~gv~~~i~~l~~el~   56 (100)
                      +||+++|||+|+.++.+++..|||.|.+|+.+...+..+  .++...+.+..+.++++
T Consensus       206 ~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~~~~~~~~~~~~~~~~~~~~~~l~  263 (268)
T 1qop_A          206 APALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSAMK  263 (268)
T ss_dssp             CCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhhHhhcccCchHHHHHHHHHHHHHH
Confidence            489999999999999999999999999999999887542  22322334444444443

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=97.58  E-value=0.00016  Score=54.09  Aligned_cols=56  Identities=20%  Similarity=0.084  Sum_probs=44.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc--CHHHHHHHHHHHHHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS--GSNGAARVLQSLVHKIL   56 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~--g~~gv~~~i~~l~~el~   56 (100)
                      +|+++.|||+++.++.+++..|||.|.+|+.+...+...  .++...+.+..+.++|+
T Consensus       207 ~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~~i~~~~~~~~~~~~~~~~~~~~l~  264 (267)
T 3vnd_A          207 PPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKIIEAHQHDEATLLAKLAEFTTAMK  264 (267)
T ss_dssp             CCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHHHHHHhccChHHHHHHHHHHHHHHH
Confidence            589999999999999989999999999999999988753  23444455555555554

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=97.57  E-value=0.00016  Score=54.21  Aligned_cols=56  Identities=20%  Similarity=0.140  Sum_probs=43.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc--CHHHHHHHHHHHHHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS--GSNGAARVLQSLVHKIL   56 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~--g~~gv~~~i~~l~~el~   56 (100)
                      +|+++.+||+++.|+.+++..|||.|.+|+.+...+...  .++...+.+..+.++|+
T Consensus       209 ~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~~i~~~~~~~~~~~~~~~~~~~~l~  266 (271)
T 3nav_A          209 PPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETHLDNPAKQLTELANFTQAMK  266 (271)
T ss_dssp             CCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhhccchHHHHHHHHHHHHHHH
Confidence            589999999999999889999999999999999988753  23334444555555554

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=97.48  E-value=4.2e-05  Score=55.40  Aligned_cols=31  Identities=26%  Similarity=0.299  Sum_probs=28.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRA   31 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~   31 (100)
                      +||+++|||+|+.|+.+.+.+|||.|++++.
T Consensus       176 ipVia~GGI~t~~da~~~l~aGA~~iG~s~~  206 (225)
T 1mzh_A          176 IKVKASGGIRDLETAISMIEAGADRIGTSSG  206 (225)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEESCH
T ss_pred             CcEEEECCCCCHHHHHHHHHhCchHHHHccH
Confidence            6899999999999999999999998877653

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=97.39  E-value=9.2e-05  Score=53.43  Aligned_cols=33  Identities=24%  Similarity=0.285  Sum_probs=31.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|++++|||+++.|+.+++..|||.|.+|+.++
T Consensus        80 ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~~~l  112 (247)
T 3tdn_A           80 LPIIASGGAGKMEHFLEAFLRGADKVSINTAAV  112 (247)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEECCSHHHH
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCeeehhhHHh
Confidence            689999999999999999999999999999887

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=97.38  E-value=7.4e-05  Score=53.57  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHh---CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL---GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL---GAd~v~ig~~~L~   34 (100)
                      +||+++|||+++.|+.+++..   |||.|.+|+.++.
T Consensus       191 ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~  227 (244)
T 1vzw_A          191 RPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYA  227 (244)
T ss_dssp             SCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT
T ss_pred             CCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHc
Confidence            589999999999999999999   9999999998874

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=97.35  E-value=8.3e-05  Score=53.12  Aligned_cols=34  Identities=26%  Similarity=0.297  Sum_probs=31.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHh---CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL---GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL---GAd~v~ig~~~L~   34 (100)
                      +||+++|||.++.|+.+++..   |||.|.+|+.++.
T Consensus       194 ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~  230 (244)
T 2y88_A          194 APVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYA  230 (244)
T ss_dssp             SCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT
T ss_pred             CCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHC
Confidence            589999999999999999999   9999999998874

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=97.33  E-value=0.00029  Score=51.93  Aligned_cols=51  Identities=20%  Similarity=0.122  Sum_probs=40.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLV   52 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~   52 (100)
                      +|+.+++||+++.++.+ +..|||.|.+|+.+...+.....+.+.++++.++
T Consensus       207 ~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~~~~~~~~~~~~~~~~~  257 (262)
T 2ekc_A          207 KPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLAGQKKIEDLGNLVKELK  257 (262)
T ss_dssp             SCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhhhhhhHHHHHHHHHHHH
Confidence            48999999999999988 8889999999999998875444445555554443

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=97.32  E-value=0.00012  Score=51.74  Aligned_cols=34  Identities=21%  Similarity=0.288  Sum_probs=31.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||.++.|+.+++..|||.|.+|+.++.
T Consensus       199 ~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~  232 (253)
T 1h5y_A          199 IPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF  232 (253)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHc
Confidence            5899999999999999999999999999998864

>2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A*

Probab=97.32  E-value=1.8e-05  Score=58.85  Aligned_cols=34  Identities=32%  Similarity=0.417  Sum_probs=30.8

Q ss_pred             CeEE--EcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVY--LDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~li--asGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++  ++|||+|+.|+.+++..|||.|.+|+.++.
T Consensus       208 ~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~  243 (297)
T 2zbt_A          208 LPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFK  243 (297)
T ss_dssp             CSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGG
T ss_pred             CCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhC
Confidence            3666  999999999999999999999999998864

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=97.32  E-value=0.00033  Score=51.78  Aligned_cols=35  Identities=31%  Similarity=0.338  Sum_probs=32.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|+++.|||+++.|+.++++.|||.|.+|+.+..+
T Consensus       179 iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a  213 (264)
T 1xm3_A          179 VPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGA  213 (264)
T ss_dssp             SCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTS
T ss_pred             CCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence            58999999999999999999999999999987753

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=97.31  E-value=0.00013  Score=52.45  Aligned_cols=34  Identities=15%  Similarity=0.203  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||+++.|+.+++..|||.|.+|+.++.
T Consensus       196 ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~  229 (253)
T 1thf_D          196 LPIIASGGAGKMEHFLEAFLAGADAALAASVFHF  229 (253)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             CCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHc
Confidence            5899999999999999999999999999998874

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=97.24  E-value=0.00017  Score=51.75  Aligned_cols=34  Identities=18%  Similarity=0.237  Sum_probs=32.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||+++.|+.+.+..|||.|.+|+.++.
T Consensus       197 ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~  230 (252)
T 1ka9_F          197 VPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF  230 (252)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             CCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHc
Confidence            5899999999999999999999999999998874

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=97.22  E-value=0.00018  Score=51.62  Aligned_cols=35  Identities=40%  Similarity=0.476  Sum_probs=32.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-----C-cchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-----G-AKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-----G-Ad~v~ig~~~L~a   35 (100)
                      +|++++|||+++.|+.+.+..     | ||.|.+|+.++..
T Consensus       189 iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~  229 (241)
T 1qo2_A          189 VKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEG  229 (241)
T ss_dssp             CEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTT
T ss_pred             CcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcC
Confidence            699999999999999999999     9 9999999998754

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=97.20  E-value=7.1e-05  Score=54.23  Aligned_cols=35  Identities=14%  Similarity=0.188  Sum_probs=31.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|++++|||+++.|+.+++..|||.|.+|+.++..
T Consensus       201 ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~  235 (266)
T 2w6r_A          201 LPIIASGGAGKMEHFLEAFLAGADAALAASVFHFR  235 (266)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC--
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcC
Confidence            58999999999999999999999999999987643

>2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A

Probab=97.18  E-value=5.5e-05  Score=56.69  Aligned_cols=34  Identities=32%  Similarity=0.442  Sum_probs=31.2

Q ss_pred             CeEE--EcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVY--LDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~li--asGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++  ++|||+|+.|+.+++..|||.|.+|+.++.
T Consensus       208 iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~  243 (305)
T 2nv1_A          208 LPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFK  243 (305)
T ss_dssp             CSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGG
T ss_pred             CCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHc
Confidence            4677  999999999999999999999999998874

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=97.17  E-value=0.00024  Score=53.98  Aligned_cols=34  Identities=29%  Similarity=0.354  Sum_probs=32.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~   34 (100)
                      +||++.|||+++.|+.+++.-| ||+|++||+++.
T Consensus       278 iPVi~~Ggi~s~~~a~~~l~~G~aD~V~iGR~~i~  312 (338)
T 1z41_A          278 MATGAVGMITDGSMAEEILQNGRADLIFIGRELLR  312 (338)
T ss_dssp             CEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCceEEeecHHHHh
Confidence            6899999999999999999999 999999999973

>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}

Probab=97.15  E-value=7.1e-05  Score=53.95  Aligned_cols=35  Identities=29%  Similarity=0.350  Sum_probs=33.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|+|+.|+|++..|+..|+.-||++|..++..||-
T Consensus       151 ~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~  185 (192)
T 3kts_A          151 IPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWE  185 (192)
T ss_dssp             CCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGT
T ss_pred             CCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhC
Confidence            58999999999999999999999999999988874

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=97.10  E-value=0.00026  Score=54.18  Aligned_cols=33  Identities=30%  Similarity=0.337  Sum_probs=31.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|||+++.|+.++|.-| ||+|++||+++
T Consensus       278 iPVi~~GgI~s~e~a~~~L~~G~aD~V~iGR~~l  311 (340)
T 3gr7_A          278 IPTGAVGLITSGWQAEEILQNGRADLVFLGRELL  311 (340)
T ss_dssp             CCEEEESSCCCHHHHHHHHHTTSCSEEEECHHHH
T ss_pred             CcEEeeCCCCCHHHHHHHHHCCCeeEEEecHHHH
Confidence            6899999999999999999999 99999999998

>2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G*

Probab=97.10  E-value=6.1e-05  Score=69.12  Aligned_cols=48  Identities=10%  Similarity=0.185  Sum_probs=43.2

Q ss_pred             CeEEEcCCCCChHHHHHHH-----------HhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAI-----------GLGAKYVFVGRAALWGLAHSGSNGAARVL   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAl-----------ALGAd~v~ig~~~L~al~~~g~~gv~~~i   48 (100)
                      ||||+.|||.+|.+++.||           +||||.|.||+.|+-+-.+.-++.+++.+
T Consensus       763 ipviaaGGi~dg~~~~aaL~g~w~~~~g~~~lgadGv~~GTrf~~t~Ea~~~~~~K~~i  821 (2051)
T 2uv8_G          763 IMLIFGSGFGSADDTYPYLTGEWSTKFDYPPMPFDGFLFGSRVMIAKEVKTSPDAKKCI  821 (2051)
T ss_dssp             BCCEEESSCCSHHHHTHHHHTCGGGTTTCCCCCCSCEECSGGGTTSTTSCCCHHHHHHH
T ss_pred             ceEEEeCCCCCHHHHHHHHccccccccCccCCCCceeeechHHHhCcccccCHHHHHHH
Confidence            6899999999999999999           99999999999999887777677777665

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=97.07  E-value=0.0006  Score=47.54  Aligned_cols=49  Identities=20%  Similarity=0.222  Sum_probs=37.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHK   54 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~e   54 (100)
                      +|++++|||. ..++.+.+..|||.|.+|+.+..    ...+...+..+.+.+.
T Consensus       151 ~pvia~GGI~-~~~~~~~~~~Ga~~v~vGs~i~~----~d~~~~~~~~~~~~~~  199 (205)
T 1wa3_A          151 VKFVPTGGVN-LDNVCEWFKAGVLAVGVGSALVK----GTPDEVREKAKAFVEK  199 (205)
T ss_dssp             CEEEEBSSCC-TTTHHHHHHHTCSCEEECHHHHC----SCHHHHHHHHHHHHHH
T ss_pred             CcEEEcCCCC-HHHHHHHHHCCCCEEEECccccC----CCHHHHHHHHHHHHHH
Confidence            5899999996 78999999999999999998875    2333344444444443

>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*

Probab=97.04  E-value=0.00064  Score=48.10  Aligned_cols=33  Identities=18%  Similarity=0.112  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++||| |+.++.+++..||+.|.+|+.+..
T Consensus       165 ~pvia~GGI-~~~nv~~~~~~Ga~gv~vgs~i~~  197 (221)
T 1yad_A          165 IPVIAIGGM-TPDRLRDVKQAGADGIAVMSGIFS  197 (221)
T ss_dssp             SCEEEESSC-CGGGHHHHHHTTCSEEEESHHHHT
T ss_pred             CCEEEECCC-CHHHHHHHHHcCCCEEEEhHHhhC
Confidence            589999999 999999999999999999998874

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=96.96  E-value=0.00068  Score=49.85  Aligned_cols=47  Identities=17%  Similarity=0.225  Sum_probs=37.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH   53 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~   53 (100)
                      +|+++.|||||+.|+-+++ .|||.|.+|+.+..     .++-+.+.++.+++
T Consensus       181 ~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~-----~p~~~~~~v~a~~~  227 (228)
T 3vzx_A          181 STLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE-----DFDRALKTVAAVKG  227 (228)
T ss_dssp             SEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH-----CHHHHHHHHHHHHC
T ss_pred             CCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhc-----CHHHHHHHHHHHhc
Confidence            5899999999999998887 69999999998864     45556666655443

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=96.92  E-value=0.00042  Score=53.02  Aligned_cols=33  Identities=24%  Similarity=0.254  Sum_probs=31.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|||+++.|+.+++.-| ||+|++||+++
T Consensus       289 iPVi~~Ggi~t~e~a~~~l~~G~aD~V~iGR~~l  322 (349)
T 3hgj_A          289 LRTGAVGLITTPEQAETLLQAGSADLVLLGRVLL  322 (349)
T ss_dssp             CEEEECSSCCCHHHHHHHHHTTSCSEEEESTHHH
T ss_pred             ceEEEECCCCCHHHHHHHHHCCCceEEEecHHHH
Confidence            6899999999999999999999 99999999998

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=96.91  E-value=0.00054  Score=52.71  Aligned_cols=34  Identities=26%  Similarity=0.123  Sum_probs=32.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~   34 (100)
                      +||++.|||+++.++.+++.-| ||+|++||+++.
T Consensus       296 iPVi~~GgI~s~e~a~~~l~~G~aD~V~iGR~~la  330 (363)
T 3l5l_A          296 LPVTSAWGFGTPQLAEAALQANQLDLVSVGRAHLA  330 (363)
T ss_dssp             CCEEECSSTTSHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred             CcEEEeCCCCCHHHHHHHHHCCCccEEEecHHHHh
Confidence            5899999999999999999999 999999999983

>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A

Probab=96.90  E-value=0.00069  Score=51.45  Aligned_cols=34  Identities=32%  Similarity=0.408  Sum_probs=30.8

Q ss_pred             eEE--EcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVY--LDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~li--asGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      |++  ++|||+++.|+.+++.+|||.|.+|+.++.+
T Consensus       209 PVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a  244 (297)
T 4adt_A          209 PVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFES  244 (297)
T ss_dssp             SSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTS
T ss_pred             CeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcC
Confidence            554  9999999999999999999999999988853

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=96.89  E-value=0.00057  Score=52.55  Aligned_cols=33  Identities=21%  Similarity=0.129  Sum_probs=31.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|||+++.++.+++.-| ||+|++||+++
T Consensus       278 iPVi~~Ggi~t~e~Ae~~l~~G~aD~V~iGR~~l  311 (343)
T 3kru_A          278 IKTSAVGLITTQELAEEILSNERADLVALGRELL  311 (343)
T ss_dssp             CEEEEESSCCCHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             cccceeeeeeHHHHHHHHHhchhhHHHHHHHHHh
Confidence            6899999999999999999999 99999999998

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=96.87  E-value=0.00024  Score=52.56  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=30.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHh--CcchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL--GAKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL--GAd~v~ig~~~   32 (100)
                      +|||++|||+|..|+.+.+.+  |++.|.+|+.+
T Consensus       206 iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al  239 (260)
T 2agk_A          206 LKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSL  239 (260)
T ss_dssp             CEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTB
T ss_pred             ceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCH
Confidence            699999999999999999999  99999999976

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=96.80  E-value=0.00092  Score=49.77  Aligned_cols=51  Identities=16%  Similarity=0.218  Sum_probs=42.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLV   52 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~   52 (100)
                      +|+++.+||+++.|+.++.. +||.|.+|+.+...+...+++...+.++.+.
T Consensus       200 ~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk~i~~~~~~~~~~~~~~~~  250 (252)
T 3tha_A          200 LPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVKCFKQGNLDIIMKDIEEIF  250 (252)
T ss_dssp             SCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHHHTTSSCHHHHHHHHHHHC
T ss_pred             CcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHHHHHhcCHHHHHHHHHHHh
Confidence            48999999999999977665 6999999999999988767766666665543

>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*

Probab=96.78  E-value=0.00044  Score=52.58  Aligned_cols=33  Identities=27%  Similarity=0.415  Sum_probs=30.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+++.|||||..|+-+++..|||.|.+|+.+.
T Consensus       228 iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav  260 (286)
T 3vk5_A          228 QVLFVSGNVRSGRQVTEYLDSGADYVGFAGALE  260 (286)
T ss_dssp             CEEEEESSCCSHHHHHHHHHTTCSEEEESGGGS
T ss_pred             CCEEEEeCCCCHHHHHHHHHcCCCEEEECchhh
Confidence            589999999999999999999999999998764

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=96.78  E-value=0.00078  Score=50.31  Aligned_cols=35  Identities=26%  Similarity=0.378  Sum_probs=32.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|+++.|||.|+.|+.+....|||.|.+|+.++.+
T Consensus       214 ~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a  248 (272)
T 3qja_A          214 VIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTS  248 (272)
T ss_dssp             SEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred             CEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCC
Confidence            48999999999999999999999999999998753

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=96.76  E-value=0.00079  Score=48.17  Aligned_cols=34  Identities=32%  Similarity=0.344  Sum_probs=32.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||++..|+-++++.|||.|.+|+.++.
T Consensus        76 iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~  109 (252)
T 1ka9_F           76 IPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVR  109 (252)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             CCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHh
Confidence            5899999999999999999999999999998873

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=96.75  E-value=0.00072  Score=54.78  Aligned_cols=34  Identities=12%  Similarity=-0.063  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHHH-hCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIG-LGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlA-LGAd~v~ig~~~L~   34 (100)
                      +|||++|||++..|+.+++. .||+.|.+|+.+..
T Consensus       497 iPVIasGGi~s~~d~~~~~~~~G~~gvivg~a~~~  531 (555)
T 1jvn_A          497 IPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR  531 (555)
T ss_dssp             SCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred             ccEEEECCCCCHHHHHHHHHhcCChHHHHHHHHHc
Confidence            68999999999999999998 79999999998753

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=96.72  E-value=0.00076  Score=48.29  Aligned_cols=34  Identities=26%  Similarity=0.218  Sum_probs=31.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||++..|+.+++..|||.|.+|+.++.
T Consensus        74 ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~  107 (241)
T 1qo2_A           74 EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLE  107 (241)
T ss_dssp             GGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHH
T ss_pred             CcEEEECCCCCHHHHHHHHHCCCCEEEECchHhh
Confidence            5899999999999999999999999999998873

>1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1

Probab=96.70  E-value=0.00063  Score=48.91  Aligned_cols=34  Identities=15%  Similarity=0.134  Sum_probs=31.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|+|+.|+||+..|+.. +.-||++|.-+++-||-
T Consensus       150 ~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~  183 (188)
T 1vkf_A          150 RTVIAAGLVETEEEARE-ILKHVSAISTSSRILWK  183 (188)
T ss_dssp             SEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred             CCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence            58999999999999999 99999999999988874

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=96.70  E-value=0.001  Score=46.43  Aligned_cols=33  Identities=30%  Similarity=0.372  Sum_probs=30.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||+ +.++.+++..|||.|.+|+++..
T Consensus       160 ~~i~~~gGI~-~~~~~~~~~~Gad~vvvGsai~~  192 (211)
T 3f4w_A          160 ARIAVAGGIS-SQTVKDYALLGPDVVIVGSAITH  192 (211)
T ss_dssp             CEEEEESSCC-TTTHHHHHTTCCSEEEECHHHHT
T ss_pred             CcEEEECCCC-HHHHHHHHHcCCCEEEECHHHcC
Confidence            4899999996 99999999999999999998874

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=96.64  E-value=0.0017  Score=48.42  Aligned_cols=49  Identities=27%  Similarity=0.268  Sum_probs=37.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH   53 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~   53 (100)
                      +||++.|||+|+.++.+.  .|||.|.+|+.+...+.. . +.+.++++.++.
T Consensus       203 ~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~~~-~-~~~~~fv~~l~~  251 (271)
T 1ujp_A          203 LPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEE-G-RSLAPLLQEIRQ  251 (271)
T ss_dssp             SCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHT-T-CCHHHHHHHHHH
T ss_pred             CCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcccch-H-HHHHHHHHHHHH
Confidence            589999999999999985  999999999999988653 1 234444444433

>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}

Probab=96.56  E-value=0.0016  Score=50.39  Aligned_cols=35  Identities=29%  Similarity=0.480  Sum_probs=31.7

Q ss_pred             CeE--EEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEV--YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~l--iasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|+  ++.|||.|+.|+...+.+|||.|.+|+.++.+
T Consensus       241 IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a  277 (330)
T 2yzr_A          241 LPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKS  277 (330)
T ss_dssp             CSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTS
T ss_pred             CCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcC
Confidence            466  69999999999999999999999999998853

>2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A*

Probab=96.47  E-value=0.0012  Score=46.73  Aligned_cols=48  Identities=27%  Similarity=0.385  Sum_probs=36.3

Q ss_pred             eEEEcCCCCC-hHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           2 EVYLDGGIRY-GTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         2 ~liasGGIr~-g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      +++++|||+. +.++.+++..|||.+.+||++..+   ..   ..+.++.+++++
T Consensus       157 ~~iv~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a---~d---p~~~~~~l~~~i  205 (208)
T 2czd_A          157 IKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNA---PN---PREAAKAIYDEI  205 (208)
T ss_dssp             CEEEECCCCSSTTHHHHHHHHTCSEEEECHHHHTS---SS---HHHHHHHHHHHH
T ss_pred             eEEEECCCCCCCCCHHHHHHcCCCEEEEChHHhcC---CC---HHHHHHHHHHHH
Confidence            3679999996 668999999999999999998853   23   344455555554

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=96.47  E-value=0.0018  Score=46.26  Aligned_cols=34  Identities=26%  Similarity=0.199  Sum_probs=31.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||+++.|+-+++..|||.|.+|+..+.
T Consensus        75 ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~  108 (253)
T 1thf_D           75 IPFTVGGGIHDFETASELILRGADKVSINTAAVE  108 (253)
T ss_dssp             SCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH
T ss_pred             CCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHh
Confidence            5899999999999999999999999999998763

>3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus}

Probab=96.41  E-value=0.0011  Score=52.18  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|||+.|||+++.++.++++- ||+|++||+++
T Consensus       319 iPVI~~GgI~t~e~Ae~~L~~-aDlVaiGR~~I  350 (419)
T 3l5a_A          319 IPLIASGGINSPESALDALQH-ADMVGMSSPFV  350 (419)
T ss_dssp             SCEEECSSCCSHHHHHHHGGG-CSEEEESTHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHh-CCcHHHHHHHH
Confidence            589999999999999999999 99999999998

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=96.37  E-value=0.0018  Score=45.56  Aligned_cols=33  Identities=24%  Similarity=0.097  Sum_probs=30.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||. +.++.+++..||+.|.+|+.+..
T Consensus       173 ~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~  205 (227)
T 2tps_A          173 IPIVGIGGIT-IDNAAPVIQAGADGVSMISAISQ  205 (227)
T ss_dssp             CCEEEESSCC-TTTSHHHHHTTCSEEEESHHHHT
T ss_pred             CCEEEEcCCC-HHHHHHHHHcCCCEEEEhHHhhc
Confidence            5899999999 99999999999999999998864

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=96.37  E-value=0.0019  Score=48.50  Aligned_cols=35  Identities=14%  Similarity=0.157  Sum_probs=32.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +++++-|||.|+.|+.++..+|||+|.+|..++.+
T Consensus       221 ~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~  255 (272)
T 3tsm_A          221 RLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQ  255 (272)
T ss_dssp             SEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTS
T ss_pred             CcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence            47999999999999999999999999999999864

>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A

Probab=96.37  E-value=0.0015  Score=49.84  Aligned_cols=34  Identities=29%  Similarity=0.479  Sum_probs=30.4

Q ss_pred             CeE--EEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEV--YLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~l--iasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||  |+.|||.|+.|+.+++.+|||.|++|+.++.
T Consensus       199 IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~  234 (291)
T 3o07_A          199 LPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFK  234 (291)
T ss_dssp             CSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGG
T ss_pred             CCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhC
Confidence            466  5689999999999999999999999998774

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=96.37  E-value=0.0018  Score=47.68  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=31.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|+++.|||||+.|+-+.+. |||.|.+|+.+...
T Consensus       191 ~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~~  224 (234)
T 2f6u_A          191 ARLFYGGGIDSREKAREMLR-YADTIIVGNVIYEK  224 (234)
T ss_dssp             SEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHHH
T ss_pred             CCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHhC
Confidence            58999999999999999999 99999999988754

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=96.37  E-value=0.0012  Score=46.25  Aligned_cols=52  Identities=15%  Similarity=0.192  Sum_probs=37.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      +|++++|||. ..|+.+.+..||+.|.+|+.+..+-  ...+...+.++.+.+.+
T Consensus       149 ipvia~GGI~-~~~i~~~~~~Ga~gv~vGsai~~~~--~~~~d~~~~~~~l~~~~  200 (212)
T 2v82_A          149 IAVFAVGGVT-PENLAQWIDAGCAGAGLGSDLYRAG--QSVERTAQQAAAFVKAY  200 (212)
T ss_dssp             CEEEEESSCC-TTTHHHHHHHTCSEEEECTTTCCTT--CCHHHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCC-HHHHHHHHHcCCCEEEEChHHhCCC--CCHHHHHHHHHHHHHHH
Confidence            5899999997 9999999999999999998876421  11233445554544443

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=96.35  E-value=0.0022  Score=49.43  Aligned_cols=33  Identities=21%  Similarity=0.165  Sum_probs=31.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~   34 (100)
                      +|||+.||| ++.|+.+++.-| ||+|++||+++.
T Consensus       294 iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~i~  327 (365)
T 2gou_A          294 GVLIYAGRY-NAEKAEQAINDGLADMIGFGRPFIA  327 (365)
T ss_dssp             SEEEEESSC-CHHHHHHHHHTTSCSEEECCHHHHH
T ss_pred             CcEEEeCCC-CHHHHHHHHHCCCcceehhcHHHHh
Confidence            589999999 999999999999 999999999984

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=96.33  E-value=0.0019  Score=50.47  Aligned_cols=32  Identities=25%  Similarity=0.243  Sum_probs=30.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +|||+.||| ++.|+.++|.-| ||+|++||+++
T Consensus       320 iPvi~~G~i-~~~~a~~~l~~g~aD~V~igR~~l  352 (402)
T 2hsa_B          320 GTFICSGGY-TRELGIEAVAQGDADLVSYGRLFI  352 (402)
T ss_dssp             SCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             CCEEEeCCC-CHHHHHHHHHCCCCceeeecHHHH
Confidence            589999999 999999999998 99999999997

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=96.32  E-value=0.0021  Score=45.03  Aligned_cols=48  Identities=19%  Similarity=0.318  Sum_probs=36.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      +|++++|||+ +.++.++...|||.+.+|+++..+   ..   ..+.++.+++++
T Consensus       171 ~~i~v~GGI~-~~~~~~~~~~Gad~vvvGsai~~~---~d---~~~a~~~~~~~~  218 (220)
T 2fli_A          171 FDIEVDGGVD-NKTIRACYEAGANVFVAGSYLFKA---SD---LVSQVQTLRTAL  218 (220)
T ss_dssp             CEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHTS---SC---HHHHHHHHHHHH
T ss_pred             ceEEEECcCC-HHHHHHHHHcCCCEEEEChHHhCC---CC---HHHHHHHHHHHh
Confidence            4789999999 788888899999999999998753   22   344444555544

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=96.31  E-value=0.0018  Score=47.76  Aligned_cols=34  Identities=21%  Similarity=0.293  Sum_probs=31.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|+++.|||||+.|+-+++. |||.|.+|+.+...
T Consensus       183 ~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~~  216 (240)
T 1viz_A          183 STLFYGGGIKDAETAKQYAE-HADVIVVGNAVYED  216 (240)
T ss_dssp             SEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHHC
T ss_pred             CCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHhC
Confidence            58999999999999999888 99999999988753

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=96.25  E-value=0.0012  Score=48.69  Aligned_cols=34  Identities=12%  Similarity=0.115  Sum_probs=31.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +++++.|||.|+.|+.+... |||.|.+|+.++.+
T Consensus       209 ~~vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~  242 (254)
T 1vc4_A          209 GVLVAESGYSRKEELKALEG-LFDAVLIGTSLMRA  242 (254)
T ss_dssp             SEEEEESCCCSHHHHHTTTT-TCSEEEECHHHHTS
T ss_pred             CeEEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCC
Confidence            47999999999999999999 99999999988853

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=96.18  E-value=0.0028  Score=48.79  Aligned_cols=33  Identities=21%  Similarity=0.154  Sum_probs=31.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~   34 (100)
                      +||++.||| ++.++.+++.-| ||+|++||+++.
T Consensus       295 iPvi~~Ggi-t~~~a~~~l~~g~aD~V~~gR~~l~  328 (364)
T 1vyr_A          295 GVIIGAGAY-TAEKAEDLIGKGLIDAVAFGRDYIA  328 (364)
T ss_dssp             SEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             CCEEEECCc-CHHHHHHHHHCCCccEEEECHHHHh
Confidence            589999999 999999999999 999999999973

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=96.12  E-value=0.00039  Score=65.79  Aligned_cols=48  Identities=21%  Similarity=0.272  Sum_probs=41.5

Q ss_pred             CeEEEcCCCCChHHHHHHH-----------HhCcchHhhhHHHHHHHhccCHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAI-----------GLGAKYVFVGRAALWGLAHSGSNGAARVL   48 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAl-----------ALGAd~v~ig~~~L~al~~~g~~gv~~~i   48 (100)
                      +||++.|||.+|.++..++           +||||.|.+|+.|+....+.-.+.+++.+
T Consensus       607 iPViaaGGI~d~~~vaaal~g~ws~~~~~p~lGAdGV~vGTrfl~t~Ea~~s~~~K~~l  665 (3089)
T 3zen_D          607 ITICVGGGIGTPERSAEYLSGRWAEVHGYPLMPIDGILVGTAAMATLEATTSPQVKQLL  665 (3089)
T ss_dssp             EEEEEESSCCCTTTTHHHHHTGGGGTTTCCCCCCSEEECSSTTTTCTTSCBCHHHHHHH
T ss_pred             CeEEEEeCCCCHHHHHHHhccccccccCccCCCCCEEEecHHHHhCcccCCCHHHHHHH
Confidence            5899999999999999999           99999999999999877665555566555

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=96.09  E-value=0.0033  Score=48.78  Aligned_cols=33  Identities=12%  Similarity=-0.132  Sum_probs=31.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~   34 (100)
                      +||++.||| ++.|+.+++.-| ||+|++||+++.
T Consensus       308 iPvi~~G~i-t~~~a~~~l~~g~aD~V~igR~~l~  341 (379)
T 3aty_A          308 GVKISNLRY-DFEEADQQIREGKVDAVAFGAKFIA  341 (379)
T ss_dssp             SCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             CcEEEECCC-CHHHHHHHHHcCCCeEEEecHHHHh
Confidence            589999999 999999999998 999999999984

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=96.08  E-value=0.0023  Score=47.34  Aligned_cols=30  Identities=33%  Similarity=0.296  Sum_probs=26.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGR   30 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~   30 (100)
                      ++|-+||||||..|+++.+.+||+.+|.+.
T Consensus       201 v~VKasGGIrt~~da~~~i~aGA~riGtS~  230 (239)
T 3ngj_A          201 ALVKAAGGIRTFDDAMKMINNGASRIGASA  230 (239)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTEEEEEESC
T ss_pred             ceEEEeCCCCCHHHHHHHHHhcccceeccc
Confidence            478999999999999999999999777654

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=96.08  E-value=0.0032  Score=48.75  Aligned_cols=32  Identities=25%  Similarity=0.194  Sum_probs=30.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.||| ++.|+.++|.-| ||+|++||+++
T Consensus       302 iPvi~~G~i-~~~~a~~~l~~g~aD~V~~gR~~l  334 (376)
T 1icp_A          302 GTFIVAGGY-DREDGNRALIEDRADLVAYGRLFI  334 (376)
T ss_dssp             SCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             CCEEEeCCC-CHHHHHHHHHCCCCcEEeecHHHH
Confidence            589999999 999999999998 99999999997

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=96.07  E-value=0.0034  Score=48.63  Aligned_cols=33  Identities=15%  Similarity=0.027  Sum_probs=30.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~   34 (100)
                      +||++.||| ++.++.+++.-| ||+|++||+++.
T Consensus       300 iPvi~~Ggi-~~~~a~~~l~~g~aD~V~igR~~l~  333 (377)
T 2r14_A          300 GGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFIA  333 (377)
T ss_dssp             SEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHHH
T ss_pred             CCEEEECCC-CHHHHHHHHHCCCceEEeecHHHHh
Confidence            589999999 799999999998 999999999983

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=96.07  E-value=0.0043  Score=44.08  Aligned_cols=33  Identities=42%  Similarity=0.560  Sum_probs=31.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+++.|||+++.++-+++..|||.|.+|+..+
T Consensus        75 ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~~~l  107 (244)
T 2y88_A           75 VQVELSGGIRDDESLAAALATGCARVNVGTAAL  107 (244)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             CcEEEECCCCCHHHHHHHHHcCCCEEEECchHh
Confidence            589999999999999999999999999998876

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=96.06  E-value=0.0033  Score=51.41  Aligned_cols=33  Identities=15%  Similarity=0.152  Sum_probs=31.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +|||+.|||+++.++.+++.-| ||+|++||+++
T Consensus       295 ~pvi~~G~i~~~~~a~~~l~~g~~d~v~~gR~~~  328 (690)
T 3k30_A          295 KPVVGVGRFTSPDAMVRQIKAGILDLIGAARPSI  328 (690)
T ss_dssp             SCEEECSCCCCHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             CeEEEeCCCCCHHHHHHHHHCCCcceEEEcHHhH
Confidence            6899999999999999999998 99999999998

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=96.06  E-value=0.0033  Score=48.66  Aligned_cols=32  Identities=16%  Similarity=0.093  Sum_probs=30.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +|||+.||| ++.++.+++.-| ||+|++||+++
T Consensus       280 iPvi~~Ggi-t~e~a~~~l~~g~aD~V~iGR~~l  312 (362)
T 4ab4_A          280 GPYIVNERF-DKASANAALASGKADAVAFGVPFI  312 (362)
T ss_dssp             SCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             CCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhH
Confidence            589999999 999999999998 99999999998

>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A

Probab=96.02  E-value=0.0042  Score=42.64  Aligned_cols=33  Identities=15%  Similarity=0.173  Sum_probs=31.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+++.||+.++.|+.+++..|||.|.+|+.+.
T Consensus       175 ~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~  207 (237)
T 3cwo_X          175 LPIIASGGAGKMEHFLEAFLAGADAALAASVFH  207 (237)
T ss_dssp             SCEEEESCCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             CCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHH
Confidence            589999999999999999999999999999876

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=96.02  E-value=0.0041  Score=43.68  Aligned_cols=33  Identities=33%  Similarity=0.409  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+++.|||+++.++-+++..|||.|.++++++
T Consensus        78 ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~  110 (253)
T 1h5y_A           78 IPVLVGGGVRSLEDATTLFRAGADKVSVNTAAV  110 (253)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCCEEEEChHHh
Confidence            589999999999999999999999999998765

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=96.00  E-value=0.0037  Score=48.40  Aligned_cols=32  Identities=16%  Similarity=0.104  Sum_probs=30.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +|||+.||| ++.++.+++.-| ||+|++||+++
T Consensus       288 iPvi~~Ggi-t~e~a~~~l~~G~aD~V~iGR~~l  320 (361)
T 3gka_A          288 GPFIVNENF-TLDSAQAALDAGQADAVAWGKLFI  320 (361)
T ss_dssp             SCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             CCEEEeCCC-CHHHHHHHHHcCCccEEEECHHhH
Confidence            589999999 999999999998 99999999998

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=96.00  E-value=0.0033  Score=51.90  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=31.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +|||+.|||.++.|+.+++.-| ||+|++||+++
T Consensus       292 ~pvi~~G~i~~~~~a~~~l~~g~aD~V~~gR~~l  325 (729)
T 1o94_A          292 KPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSI  325 (729)
T ss_dssp             SCEECCSCCCCHHHHHHHHHTTSCSBEEESHHHH
T ss_pred             CEEEEeCCCCCHHHHHHHHHCCCCCEEEeCchhh
Confidence            6899999999999999999998 99999999998

>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}

Probab=95.97  E-value=0.0041  Score=45.68  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.||| ++.++...+..||+.|.+++.++.
T Consensus       192 iPvvAiGGI-~~~ni~~~~~aGa~gvav~sai~~  224 (243)
T 3o63_A          192 KPWFAIGGI-NAQRLPAVLDAGARRIVVVRAITS  224 (243)
T ss_dssp             CCEEEESSC-CTTTHHHHHHTTCCCEEESHHHHT
T ss_pred             CCEEEecCC-CHHHHHHHHHcCCCEEEEeHHHhC
Confidence            589999999 999999999999999999998874

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=95.90  E-value=0.0016  Score=47.04  Aligned_cols=33  Identities=15%  Similarity=0.174  Sum_probs=30.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|++++|||++..|+.+++..|||.|.+|+.++
T Consensus        75 iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~  107 (266)
T 2w6r_A           75 LPIIASGGAGKMEHFLEAFLAGADKALAASVFH  107 (266)
T ss_dssp             SCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred             CCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence            589999999999999999999999999998766

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=95.87  E-value=0.0059  Score=43.51  Aligned_cols=33  Identities=39%  Similarity=0.549  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+++.|||+++.++-+++..|||.|.+|+..+
T Consensus        76 ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~~~l  108 (244)
T 1vzw_A           76 IKVELSGGIRDDDTLAAALATGCTRVNLGTAAL  108 (244)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             CcEEEECCcCCHHHHHHHHHcCCCEEEECchHh
Confidence            589999999999999999999999999998766

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=95.84  E-value=0.0039  Score=50.70  Aligned_cols=34  Identities=18%  Similarity=0.095  Sum_probs=32.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L~   34 (100)
                      +||++.|||.++.++.+++.-| ||+|++||+++.
T Consensus       281 iPvi~~Ggi~~~~~a~~~l~~g~aD~V~~gR~~l~  315 (671)
T 1ps9_A          281 LPLVTTNRINDPQVADDILSRGDADMVSMARPFLA  315 (671)
T ss_dssp             SCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHHH
T ss_pred             ceEEEeCCCCCHHHHHHHHHcCCCCEEEeCHHHHh
Confidence            5899999999999999999999 999999999983

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=95.75  E-value=0.0031  Score=43.76  Aligned_cols=33  Identities=21%  Similarity=0.209  Sum_probs=30.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||. +.++.+++..||+.|.+|+.+..
T Consensus       163 ~pvia~GGI~-~~nv~~~~~~Ga~gv~vgs~i~~  195 (215)
T 1xi3_A          163 IPVVAIGGIN-KDNAREVLKTGVDGIAVISAVMG  195 (215)
T ss_dssp             SCEEEESSCC-TTTHHHHHTTTCSEEEESHHHHT
T ss_pred             CCEEEECCcC-HHHHHHHHHcCCCEEEEhHHHhC
Confidence            5899999999 99999999999999999998864

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=95.68  E-value=0.0051  Score=45.39  Aligned_cols=33  Identities=18%  Similarity=0.270  Sum_probs=29.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||+++.++.++.. |||.|.+|+.+..
T Consensus       187 ~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~  219 (235)
T 3w01_A          187 TQLFYGGGISSEQQATEMAA-IADTIIVGDIIYK  219 (235)
T ss_dssp             SEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHH
T ss_pred             CCEEEECCcCCHHHHHHHHc-CCCEEEECCceec
Confidence            48999999999999988776 9999999998874

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=95.51  E-value=0.0023  Score=45.49  Aligned_cols=34  Identities=29%  Similarity=0.473  Sum_probs=29.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|++++||| ++.++.+++..|||.+.+|+++..+
T Consensus       167 ~pi~v~GGI-~~~~~~~~~~aGAd~vvvGsaI~~a  200 (218)
T 3jr2_A          167 IELSITGGI-VPEDIYLFEGIKTKTFIAGRALAGA  200 (218)
T ss_dssp             CEEEEESSC-CGGGGGGGTTSCEEEEEESGGGSHH
T ss_pred             CCEEEECCC-CHHHHHHHHHcCCCEEEEchhhcCC
Confidence            479999999 5888999999999999999987654

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=95.47  E-value=0.026  Score=40.82  Aligned_cols=34  Identities=29%  Similarity=0.379  Sum_probs=28.9

Q ss_pred             CeEEEcCCCCC--hHH----HHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRY--GTD----VFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~--g~D----i~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||++  ..|    +.+++..||+.|.+|+.++.
T Consensus       203 ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~  242 (273)
T 2qjg_A          203 APVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQ  242 (273)
T ss_dssp             SCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHT
T ss_pred             CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhC
Confidence            58999999995  667    66667899999999998874

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=95.37  E-value=0.011  Score=41.08  Aligned_cols=33  Identities=18%  Similarity=0.249  Sum_probs=29.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||+ +.++-+++..|||.+.+|+++..
T Consensus       159 ~pi~v~GGI~-~~~~~~~~~aGad~vvvGsaI~~  191 (207)
T 3ajx_A          159 VPFSVAGGVK-VATIPAVQKAGAEVAVAGGAIYG  191 (207)
T ss_dssp             SCEEEESSCC-GGGHHHHHHTTCSEEEESHHHHT
T ss_pred             CCEEEECCcC-HHHHHHHHHcCCCEEEEeeeccC
Confidence            4799999998 67788889999999999999864

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=95.16  E-value=0.015  Score=42.15  Aligned_cols=51  Identities=22%  Similarity=0.356  Sum_probs=36.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPE   58 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~   58 (100)
                      +++.++|||+ +..+..+...|||.+.+|+++..+   ..+   .+.++.++++++..
T Consensus       170 ~~I~VdGGI~-~~t~~~~~~aGAd~~VvGsaIf~a---~dp---~~~~~~l~~~~~~~  220 (228)
T 3ovp_A          170 LDIEVDGGVG-PDTVHKCAEAGANMIVSGSAIMRS---EDP---RSVINLLRNVCSEA  220 (228)
T ss_dssp             CEEEEESSCS-TTTHHHHHHHTCCEEEESHHHHTC---SCH---HHHHHHHHHHHHHH
T ss_pred             CCEEEeCCcC-HHHHHHHHHcCCCEEEEeHHHhCC---CCH---HHHHHHHHHHHHHH
Confidence            3688999995 788999999999999999877632   233   34455555555443

>2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii}

Probab=95.08  E-value=0.014  Score=41.78  Aligned_cols=35  Identities=31%  Similarity=0.448  Sum_probs=32.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +|+++.|||+++.|+.+....|||.|.+|+.++.+
T Consensus       171 ~~ii~ggGI~~~~~~~~~~~~gaDgvlVGsAi~~~  205 (219)
T 2h6r_A          171 VKVLCGAGISKGEDVKAALDLGAEGVLLASGVVKA  205 (219)
T ss_dssp             CEEEECSSCCSHHHHHHHHTTTCCCEEESHHHHTC
T ss_pred             CeEEEEeCcCcHHHHHHHhhCCCCEEEEcHHHhCc
Confidence            58999999999999999999999999999998864

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=94.70  E-value=0.029  Score=42.51  Aligned_cols=35  Identities=29%  Similarity=0.286  Sum_probs=28.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHh--hhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVF--VGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~--ig~~~L~a   35 (100)
                      ++|.++||||+..|+.+.+.+||+-+|  .|..++..
T Consensus       235 v~VKAAGGIrt~edAl~mi~aGA~RiGtS~g~~I~~~  271 (288)
T 3oa3_A          235 TRVKASGGIRTIEDCVKMVRAGAERLGASAGVKIVNE  271 (288)
T ss_dssp             CEEEEESSCCSHHHHHHHHHTTCSEEEESCHHHHHHH
T ss_pred             ceEEEeCCCCCHHHHHHHHHcCCceeehhhHHHHHHH
Confidence            578999999999999999999999544  44455544

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=94.67  E-value=0.04  Score=40.52  Aligned_cols=35  Identities=29%  Similarity=0.411  Sum_probs=30.3

Q ss_pred             CeEEEcCCCC--ChHHHHHHH----HhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIR--YGTDVFKAI----GLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr--~g~Di~KAl----ALGAd~v~ig~~~L~a   35 (100)
                      +||+++|||+  +..|+.+.+    ..||+.+.+||.++.+
T Consensus       197 ~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~  237 (263)
T 1w8s_A          197 VPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQR  237 (263)
T ss_dssp             SCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTS
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCC
Confidence            4899999999  888887777    8999999999988754

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=94.57  E-value=0.014  Score=41.28  Aligned_cols=33  Identities=27%  Similarity=0.437  Sum_probs=29.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||+ +.++.+++..|||.|.+|+++..
T Consensus       180 ~pi~v~GGI~-~~n~~~~~~aGad~vvvgSaI~~  212 (230)
T 1rpx_A          180 PWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG  212 (230)
T ss_dssp             CEEEEESSCC-TTTHHHHHHHTCCEEEESHHHHT
T ss_pred             ceEEEECCCC-HHHHHHHHHcCCCEEEEChhhhC
Confidence            4789999998 78888888899999999998874

>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...

Probab=94.41  E-value=0.025  Score=42.32  Aligned_cols=34  Identities=12%  Similarity=0.120  Sum_probs=31.5

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      .+++-+||+|+.|+.+....|+|+|.+|..++.+
T Consensus       206 ~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~  239 (258)
T 4a29_A          206 VKVAKLGISERNEIEELRKLGVNAFLISSSLMRN  239 (258)
T ss_dssp             EEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHC
T ss_pred             EEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCC
Confidence            4788899999999999999999999999999873

>4gbu_A NADPH dehydrogenase 1; alpha/beta barrel, enenone reductase, alkene reductase, NADP oxidoreductase, carvone, enenatioselectivity; HET: 0WV 1PE FMN; 1.18A {Saccharomyces pastorianus} PDB: 4ge8_A* 1oya_A* 1oyb_A* 1oyc_A* 3tx9_A* 3rnd_A* 1k02_A* 1k03_A* 1bwk_A* 1bwl_A*

Probab=94.38  E-value=0.019  Score=44.66  Aligned_cols=33  Identities=15%  Similarity=0.081  Sum_probs=28.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L   33 (100)
                      +|||+.|||.+..+++.++.- +||+|++||+++
T Consensus       319 ~pvi~~G~~~~~~~~~~~~~~~~aDlV~~gR~~i  352 (400)
T 4gbu_A          319 GPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFI  352 (400)
T ss_dssp             SCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHH
T ss_pred             CCEEEeCCCCChHHHHHHHHcCCCeEhHHHHHHH
Confidence            589999999999888877754 699999999998

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=94.17  E-value=0.033  Score=40.49  Aligned_cols=33  Identities=30%  Similarity=0.521  Sum_probs=30.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+.+.||||+-.|+-+.+..|||-|.+++..+
T Consensus        76 ~pl~vGGGIrs~e~~~~~l~~GadkVii~t~a~  108 (243)
T 4gj1_A           76 VNLQVGGGIRSKEEVKALLDCGVKRVVIGSMAI  108 (243)
T ss_dssp             SEEEEESSCCCHHHHHHHHHTTCSEEEECTTTT
T ss_pred             CCeEeccccccHHHHHHHHHcCCCEEEEccccc
Confidence            589999999999999999999999999997554

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=94.08  E-value=0.078  Score=40.02  Aligned_cols=47  Identities=21%  Similarity=0.321  Sum_probs=34.2

Q ss_pred             CeEEEcCCCCChH-----HHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGT-----DVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQS   50 (100)
Q Consensus         1 i~liasGGIr~g~-----Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~   50 (100)
                      +||+++||++++.     .+-.++..||+.+.+||.+...   ..+....+.+..
T Consensus       224 vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~---~dp~~~~~al~~  275 (295)
T 3glc_A          224 VPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQS---DHPVAMMKAVQA  275 (295)
T ss_dssp             SCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTS---SSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcC---cCHHHHHHHHHH
Confidence            5899999999643     3557779999999999988754   345555544443

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=94.06  E-value=0.057  Score=39.58  Aligned_cols=34  Identities=38%  Similarity=0.427  Sum_probs=28.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcc--hHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAK--YVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd--~v~ig~~~L~   34 (100)
                      ++|-++||||+..|+++.+.+||+  -+..|+.++.
T Consensus       193 v~VKaaGGirt~~~al~~i~aGa~RiG~S~g~~I~~  228 (234)
T 1n7k_A          193 MGVKASGGIRSGIDAVLAVGAGADIIGTSSAVKVLE  228 (234)
T ss_dssp             CEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHHH
T ss_pred             CCEEEecCCCCHHHHHHHHHcCccccchHHHHHHHH
Confidence            588999999999999999999999  5555555443

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=93.97  E-value=0.049  Score=39.45  Aligned_cols=33  Identities=27%  Similarity=0.328  Sum_probs=27.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcc--hHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAK--YVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd--~v~ig~~~L   33 (100)
                      ++|-++||||+..|+++.+.+||+  -+..|+.++
T Consensus       177 v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~~I~  211 (220)
T 1ub3_A          177 AQVKAAGGIRDRETALRMLKAGASRLGTSSGVALV  211 (220)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCcccchhHHHHHH
Confidence            579999999999999999999999  555555544

>1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A

Probab=93.95  E-value=0.014  Score=43.14  Aligned_cols=33  Identities=21%  Similarity=0.280  Sum_probs=31.0

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      ++++-|||.|+.|+.++..+ ||+|.+|..++.+
T Consensus       204 ~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~  236 (251)
T 1i4n_A          204 VVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKA  236 (251)
T ss_dssp             EEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHC
T ss_pred             EEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCC
Confidence            68999999999999999999 9999999999864

>1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A*

Probab=93.84  E-value=0.02  Score=40.42  Aligned_cols=32  Identities=22%  Similarity=0.247  Sum_probs=28.4

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      |++++|||+ +..+.+++..|||.+.+||++..
T Consensus       165 ~i~v~GGI~-~~~~~~~~~aGad~ivvG~~I~~  196 (216)
T 1q6o_A          165 KVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRD  196 (216)
T ss_dssp             EEEEESSCC-GGGGGGGTTSCCSEEEESHHHHT
T ss_pred             cEEEECCcC-hhhHHHHHHcCCCEEEEeehhcC
Confidence            689999998 66788889999999999999874

>3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A*

Probab=93.84  E-value=0.014  Score=46.01  Aligned_cols=34  Identities=18%  Similarity=0.097  Sum_probs=29.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHh----CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL----GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL----GAd~v~ig~~~L~   34 (100)
                      +|||+.|||.+..|..+++.-    +||+|++||+++.
T Consensus       314 ~PvI~~Ggi~~~~dA~~~i~~~~~g~aDlVa~GR~~ia  351 (407)
T 3tjl_A          314 GVILKAGNYSYDAPEFKTLKEDIADKRTLVGFSRYFTS  351 (407)
T ss_dssp             SEEEEESCGGGGTTTTHHHHHHHTTSSEEEECSHHHHH
T ss_pred             CCEEecCCCCCHHHHHHHHHhhccCCCeEEEeChhhhh
Confidence            489999999999888777765    5999999999983

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=93.66  E-value=0.062  Score=38.19  Aligned_cols=33  Identities=21%  Similarity=0.413  Sum_probs=28.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++|||.. .++.+++..|||.+.+|+.+..
T Consensus       174 ~pi~v~GGI~~-~ni~~~~~aGaD~vvvGsai~~  206 (228)
T 1h1y_A          174 LDIEVDGGLGP-STIDVAASAGANCIVAGSSIFG  206 (228)
T ss_dssp             SEEEEESSCST-TTHHHHHHHTCCEEEESHHHHT
T ss_pred             CCEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence            48999999987 6888888889999999998864

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=93.58  E-value=0.071  Score=39.10  Aligned_cols=28  Identities=25%  Similarity=0.335  Sum_probs=24.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFV   28 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~i   28 (100)
                      ++|-++|||||..|+.+.+.+||+-+|.
T Consensus       191 v~VKaaGGIrt~~~a~~~i~aGa~RiGt  218 (231)
T 3ndo_A          191 LGVKASGGIRTAEQAAAMLDAGATRLGL  218 (231)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred             ceEEEeCCCCCHHHHHHHHHhcchhccc
Confidence            4788999999999999999999995443

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=93.56  E-value=0.069  Score=39.90  Aligned_cols=29  Identities=38%  Similarity=0.377  Sum_probs=25.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVG   29 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig   29 (100)
                      ++|-++|||||..|+.+.+.+||+-+|.+
T Consensus       217 v~VKaAGGIrt~~~al~mi~aGA~RiGtS  245 (260)
T 3r12_A          217 MGVKASGGIRTFEDAVKMIMYGADRIGTS  245 (260)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred             ceEEEeCCCCCHHHHHHHHHcCCceeecc
Confidence            47889999999999999999999955543

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=93.49  E-value=0.03  Score=39.76  Aligned_cols=48  Identities=13%  Similarity=0.093  Sum_probs=36.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH   53 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~   53 (100)
                      +|+++.|||. ..++...++.||+.|.+++.+..    ...+.+.+..+.+.+
T Consensus       152 ipvvaiGGI~-~~n~~~~l~aGa~~vavgSai~~----~d~~~i~~~a~~~~~  199 (207)
T 2yw3_A          152 VRFLPTGGIK-EEHLPHYAALPNLLAVGGSWLLQ----GNLEAVRAKVRAAKA  199 (207)
T ss_dssp             CEEEEBSSCC-GGGHHHHHTCSSBSCEEESGGGS----SCHHHHHHHHHHHHH
T ss_pred             CcEEEeCCCC-HHHHHHHHhCCCcEEEEehhhhC----CCHHHHHHHHHHHHH
Confidence            5899999996 68999999999999999987654    344555555554443

>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}

Probab=93.48  E-value=0.027  Score=39.70  Aligned_cols=33  Identities=18%  Similarity=0.128  Sum_probs=30.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.|||. +.++..++..||+.|.+++.+..
T Consensus       145 iPviaiGGI~-~~nv~~~~~~Ga~gVav~s~i~~  177 (210)
T 3ceu_A          145 SKVMALGGIN-EDNLLEIKDFGFGGAVVLGDLWN  177 (210)
T ss_dssp             TTEEEESSCC-TTTHHHHHHTTCSEEEESHHHHT
T ss_pred             CCEEEECCCC-HHHHHHHHHhCCCEEEEhHHhHc
Confidence            5899999997 88999999999999999998864

>3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A

Probab=93.11  E-value=0.033  Score=39.99  Aligned_cols=49  Identities=14%  Similarity=0.141  Sum_probs=34.5

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILP   57 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~   57 (100)
                      ++.++||| ++.++-.+...|||.+.+||++..+   ..+.   +.++.++++++.
T Consensus       170 ~i~v~gGI-~~~~~~~~~~aGad~~VvG~~I~~a---~dp~---~a~~~~~~~~~~  218 (221)
T 3exr_A          170 RVSVTGGL-SVDTLKLFEGVDVFTFIAGRGITEA---KNPA---GAARAFKDEIKR  218 (221)
T ss_dssp             EEEEESSC-CGGGGGGGTTCCCSEEEECHHHHTS---SSHH---HHHHHHHHHHHH
T ss_pred             eEEEECCC-CHHHHHHHHHCCCCEEEECchhhCC---CCHH---HHHHHHHHHHHH
Confidence            57899999 4567888999999999999987643   2332   334455555543

>4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis}

Probab=93.10  E-value=0.04  Score=42.15  Aligned_cols=31  Identities=16%  Similarity=0.031  Sum_probs=28.0

Q ss_pred             EEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           3 VYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         3 liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      .++.||+.++.++-++|+-| ||+|++||+++
T Consensus       288 ~v~~~g~~~~~~ae~~l~~G~aD~V~~gR~~l  319 (358)
T 4a3u_A          288 PLVLNQDYTFETAQAALDSGVADAISFGRPFI  319 (358)
T ss_dssp             CEEEESSCCHHHHHHHHHHTSCSEEEESHHHH
T ss_pred             cEEEeCCCCHHHHHHHHHcCCceEeHhhHHHH
Confidence            34568899999999999999 99999999998

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=92.94  E-value=0.047  Score=40.20  Aligned_cols=48  Identities=13%  Similarity=0.270  Sum_probs=34.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      ++|.+||||. ...+.++...|||.+.+|+++..+   ..+   .+.++.|++++
T Consensus       196 ~~I~VDGGI~-~~ti~~~~~aGAD~~V~GSaIf~a---~dp---~~~i~~l~~~i  243 (246)
T 3inp_A          196 ILLEIDGGVN-PYNIAEIAVCGVNAFVAGSAIFNS---DSY---KQTIDKMRDEL  243 (246)
T ss_dssp             CEEEEESSCC-TTTHHHHHTTTCCEEEESHHHHTS---SCH---HHHHHHHHHHH
T ss_pred             eeEEEECCcC-HHHHHHHHHcCCCEEEEehHHhCC---CCH---HHHHHHHHHHH
Confidence            3578999998 577889999999999999876532   233   34455555544

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=92.55  E-value=0.042  Score=39.90  Aligned_cols=32  Identities=25%  Similarity=0.260  Sum_probs=26.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+++|||+++..|+.+ +.-+++.|.+|+.+.
T Consensus       197 ipviasGGv~~~~Dl~~-l~~~~~gvivg~Al~  228 (243)
T 4gj1_A          197 ICIQASGGVASLKDLEN-LKGICSGVIVGKALL  228 (243)
T ss_dssp             SEEEEESCCCSHHHHHH-TTTTCSEEEECHHHH
T ss_pred             CCEEEEcCCCCHHHHHH-HHccCchhehHHHHH
Confidence            58999999999999965 455688888998764

>1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1

Probab=92.12  E-value=0.18  Score=36.69  Aligned_cols=35  Identities=34%  Similarity=0.478  Sum_probs=32.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      ++++.-|||+++.|+-.....|+|.+.+|+.+|.+
T Consensus       174 ~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a  208 (226)
T 1w0m_A          174 VSVITGAGIESGDDVAAALRLGTRGVLLASAAVKA  208 (226)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred             CEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCC
Confidence            46899999999999999999999999999999864

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=91.96  E-value=0.14  Score=36.99  Aligned_cols=48  Identities=15%  Similarity=0.301  Sum_probs=34.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      ++|.+||||. ...+-++...|||.+.+|+.+..+   ..   ..+.++.+++.+
T Consensus       174 ~~I~VdGGI~-~~ti~~~~~aGAd~~V~GsaIf~~---~d---~~~~i~~l~~~~  221 (227)
T 1tqx_A          174 LNIQVDGGLN-IETTEISASHGANIIVAGTSIFNA---ED---PKYVIDTMRVSV  221 (227)
T ss_dssp             CEEEEESSCC-HHHHHHHHHHTCCEEEESHHHHTC---SS---HHHHHHHHHHHH
T ss_pred             CeEEEECCCC-HHHHHHHHHcCCCEEEEeHHHhCC---CC---HHHHHHHHHHHH
Confidence            4688999997 678889999999999999887632   23   344454555443

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=91.22  E-value=0.075  Score=38.13  Aligned_cols=33  Identities=21%  Similarity=0.432  Sum_probs=29.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+.++|||.. .++.+....|||.+.+|+.+..
T Consensus       174 ~~I~v~GGI~~-~~~~~~~~aGad~vvvGSai~~  206 (230)
T 1tqj_A          174 PWIEVDGGLKP-NNTWQVLEAGANAIVAGSAVFN  206 (230)
T ss_dssp             CEEEEESSCCT-TTTHHHHHHTCCEEEESHHHHT
T ss_pred             CcEEEECCcCH-HHHHHHHHcCCCEEEECHHHHC
Confidence            47999999997 7888888899999999998764

>1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A

Probab=90.72  E-value=0.11  Score=41.45  Aligned_cols=34  Identities=21%  Similarity=0.203  Sum_probs=31.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +++|+-|||.|+.|+.++..+ ||+|.+|..++.+
T Consensus       209 ~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~  242 (452)
T 1pii_A          209 VTVISESGINTYAQVRELSHF-ANGFLIGSALMAH  242 (452)
T ss_dssp             SEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTC
T ss_pred             CeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCC
Confidence            368999999999999999999 9999999999864

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=90.44  E-value=0.34  Score=36.68  Aligned_cols=33  Identities=12%  Similarity=0.028  Sum_probs=28.9

Q ss_pred             EEEcC-CCCChHHHHHHHHh--CcchHhhhHHHHHH
Q psy7649           3 VYLDG-GIRYGTDVFKAIGL--GAKYVFVGRAALWG   35 (100)
Q Consensus         3 liasG-GIr~g~Di~KAlAL--GAd~v~ig~~~L~a   35 (100)
                      ++..| ||.+|.|+-+++.+  |++.++.+..+..+
T Consensus       230 vLc~gGpIstpeDv~~~l~~t~G~~G~~gASsier~  265 (286)
T 2p10_A          230 ILSHGGPIANPEDARFILDSCQGCHGFYGASSMERL  265 (286)
T ss_dssp             EEEESTTCCSHHHHHHHHHHCTTCCEEEESHHHHHH
T ss_pred             EEecCCCCCCHHHHHHHHhcCCCccEEEeehhhhcC
Confidence            45555 99999999999999  99999999888765

>1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A

Probab=90.43  E-value=0.077  Score=42.87  Aligned_cols=34  Identities=26%  Similarity=0.360  Sum_probs=30.0

Q ss_pred             CeEEEcCCCCChHH-----------HHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTD-----------VFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~D-----------i~KAlALGAd~v~ig~~~L~   34 (100)
                      +||++.||||+..|           +.+.+..|||.|.+|+....
T Consensus       328 ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad~V~igt~~~~  372 (555)
T 1jvn_A          328 VPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVY  372 (555)
T ss_dssp             SCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             CcEEEeCccccchhcccccchHHHHHHHHHHcCCCEEEECCHHhh
Confidence            58999999999844           88999999999999998754

>2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae}

Probab=89.67  E-value=0.089  Score=38.62  Aligned_cols=50  Identities=16%  Similarity=0.036  Sum_probs=35.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLV   52 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~   52 (100)
                      +|+.+.||||+- |+.+.+ .|||-|.+|+..+.--....++-+.+.++.+.
T Consensus        77 ~pv~vgGGir~~-~~~~~l-~Ga~~Viigs~a~~~~g~~~p~~~~~~~~~~g  126 (260)
T 2agk_A           77 QFLQVGGGINDT-NCLEWL-KWASKVIVTSWLFTKEGHFQLKRLERLTELCG  126 (260)
T ss_dssp             TTSEEESSCCTT-THHHHT-TTCSCEEECGGGBCTTCCBCHHHHHHHHHHHC
T ss_pred             ceEEEeCCCCHH-HHHHHh-cCCCEEEECcHHHhhcCCCCHHHHHHHHHHhC
Confidence            578899999986 999999 99999999976552100011655666655554

>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*

Probab=89.64  E-value=0.13  Score=38.21  Aligned_cols=32  Identities=16%  Similarity=0.070  Sum_probs=28.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +++.+|||| |...+..-...|||.+++|+...
T Consensus       230 ~~i~AsGGI-~~~ni~~~~~aGaD~i~vGs~i~  261 (273)
T 2b7n_A          230 VLLEASGNI-SLESINAYAKSGVDAISVGALIH  261 (273)
T ss_dssp             CEEEEESSC-CTTTHHHHHTTTCSEEECTHHHH
T ss_pred             cEEEEECCC-CHHHHHHHHHcCCcEEEEcHHhc
Confidence            479999999 89999999999999999998743

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=89.09  E-value=0.31  Score=35.57  Aligned_cols=32  Identities=13%  Similarity=0.203  Sum_probs=28.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+++.||| ++.++...++.||..|..|+.+.
T Consensus       175 ip~~ptGGI-~~~n~~~~l~aGa~~~vgGs~l~  206 (232)
T 4e38_A          175 IRLMPTGGI-TPSNIDNYLAIPQVLACGGTWMV  206 (232)
T ss_dssp             CEEEEBSSC-CTTTHHHHHTSTTBCCEEECGGG
T ss_pred             CCeeeEcCC-CHHHHHHHHHCCCeEEEECchhc
Confidence            589999999 58999999999999988887654

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=88.75  E-value=0.35  Score=35.15  Aligned_cols=24  Identities=25%  Similarity=0.422  Sum_probs=22.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHh---Ccc
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL---GAK   24 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL---GAd   24 (100)
                      ++|-++|||||..|+.+.+.+   ||+
T Consensus       185 v~vKaaGGirt~~~al~~i~a~~~Ga~  211 (226)
T 1vcv_A          185 LGVKMAGGIRTREQAKAIVDAIGWGED  211 (226)
T ss_dssp             CEEEEESSCCSHHHHHHHHHHHCSCSC
T ss_pred             ceEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence            478899999999999999999   998

>1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3

Probab=87.88  E-value=0.26  Score=35.32  Aligned_cols=33  Identities=27%  Similarity=0.266  Sum_probs=27.0

Q ss_pred             eEEEcCCCCChHH----------HHHHHHhCcchHhhhHHHHH
Q psy7649           2 EVYLDGGIRYGTD----------VFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         2 ~liasGGIr~g~D----------i~KAlALGAd~v~ig~~~L~   34 (100)
                      +++++|||+-...          ..+++..|||.+.+||++..
T Consensus       177 ~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~  219 (239)
T 1dbt_A          177 FLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITK  219 (239)
T ss_dssp             CEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHT
T ss_pred             cEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcC
Confidence            4789999986543          36778899999999999875

>1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1

Probab=87.83  E-value=0.27  Score=35.71  Aligned_cols=35  Identities=34%  Similarity=0.413  Sum_probs=32.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      ++++.-|||+++.|+-.....|+|.+.+|+.+|.+
T Consensus       177 ~~ilyggsV~~~n~~~~~~~~~vDG~LVG~a~l~a  211 (225)
T 1hg3_A          177 VKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKA  211 (225)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTC
T ss_pred             CEEEEeCCCCcHHHHHHHHhCCCCEEEeCHHHHCC
Confidence            46899999999999999999999999999999864

>2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A*

Probab=87.46  E-value=0.22  Score=35.99  Aligned_cols=49  Identities=27%  Similarity=0.409  Sum_probs=32.6

Q ss_pred             eEEEcCCCCCh-HH---------HHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649           2 EVYLDGGIRYG-TD---------VFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL   56 (100)
Q Consensus         2 ~liasGGIr~g-~D---------i~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~   56 (100)
                      +++++|||+-. .+         +-.++..|||.+.+||++..+   ..+   .+.++.+++++.
T Consensus       178 ~i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a---~dp---~~a~~~l~~~i~  236 (246)
T 2yyu_A          178 FLAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRA---ADP---LRTYARLQHEWN  236 (246)
T ss_dssp             SEEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTS---SSH---HHHHHHHHHHCC
T ss_pred             CEEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCC---CCH---HHHHHHHHHHHH
Confidence            37899999842 22         666778899999999998753   233   444445555543

>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1

Probab=87.45  E-value=0.36  Score=36.34  Aligned_cols=31  Identities=13%  Similarity=0.278  Sum_probs=28.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~   32 (100)
                      +++.+|||| |...+..-...|+|.+++|...
T Consensus       253 ~~I~ASGGI-t~~~i~~~a~~GvD~isvGsli  283 (296)
T 1qap_A          253 ARLEVSGNV-TAETLREFAETGVDFISVGALT  283 (296)
T ss_dssp             CCEEECCCS-CHHHHHHHHHTTCSEEECSHHH
T ss_pred             CeEEEECCC-CHHHHHHHHHcCCCEEEEeHHH
Confidence            478999999 9999999999999999999843

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=87.36  E-value=0.28  Score=36.43  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=22.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcc
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAK   24 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd   24 (100)
                      ++|-++|||||..|+++.+.+||+
T Consensus       199 v~VKaaGGIrt~~~al~~i~aga~  222 (260)
T 1p1x_A          199 VGFKPAGGVRTAEDAQKYLAIADE  222 (260)
T ss_dssp             CEEECBSSCCSHHHHHHHHHHHHH
T ss_pred             ceEEEeCCCCCHHHHHHHHHhhhh
Confidence            478899999999999999999987

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=87.12  E-value=0.41  Score=34.97  Aligned_cols=34  Identities=15%  Similarity=-0.038  Sum_probs=30.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +||+.-++|.+..++..|++.|||.|.++...+.
T Consensus       107 lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~l~  140 (254)
T 1vc4_A          107 LPLLRKDFVVDPFMLEEARAFGASAALLIVALLG  140 (254)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEEEHHHHG
T ss_pred             CCEEECCcCCCHHHHHHHHHcCCCEEEECccchH
Confidence            5889999999999999999999999999987663

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=87.05  E-value=0.32  Score=36.61  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=22.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcch
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKY   25 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~   25 (100)
                      ++|-++|||||..|+++.+.+||+.
T Consensus       226 vgVKaaGGIrt~e~al~~i~aga~~  250 (281)
T 2a4a_A          226 IGLKVSGGISDLNTASHYILLARRF  250 (281)
T ss_dssp             CEEEEESSCCSHHHHHHHHHHHHHH
T ss_pred             ceEEEeCCCCCHHHHHHHHHHhhhh
Confidence            4788999999999999999999973

>3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A*

Probab=86.47  E-value=0.55  Score=38.01  Aligned_cols=33  Identities=9%  Similarity=-0.006  Sum_probs=29.3

Q ss_pred             CeEEEcCCCCChHHHHHHHH--------hCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIG--------LGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlA--------LGAd~v~ig~~~L~   34 (100)
                      +|+++-||| +..++...+.        .|||.|.+++.++.
T Consensus       174 iPvvAIGGI-~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~  214 (540)
T 3nl6_A          174 CRTVGIGGL-HPDNIERVLYQCVSSNGKRSLDGICVVSDIIA  214 (540)
T ss_dssp             CEEEEESSC-CTTTHHHHHHHCBCTTSSCBCSCEEESHHHHT
T ss_pred             CCEEEEcCC-CHHHHHHHHHhhcccccccCceEEEEeHHHhc
Confidence            589999999 8888988887        89999999998873

>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A

Probab=86.42  E-value=0.17  Score=38.06  Aligned_cols=31  Identities=19%  Similarity=0.201  Sum_probs=27.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~   32 (100)
                      +++.+|||| |...+..-...|||.+++|+..
T Consensus       245 ~~I~ASGGI-t~~ni~~~~~aGaD~i~vGs~i  275 (299)
T 2jbm_A          245 VAVEASGGI-TLDNLPQFCGPHIDVISMGMLT  275 (299)
T ss_dssp             SEEEEESSC-CTTTHHHHCCTTCCEEECTHHH
T ss_pred             eeEEEECCC-CHHHHHHHHHCCCCEEEEChhh
Confidence            479999999 8999999999999999999854

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=86.24  E-value=0.17  Score=36.57  Aligned_cols=32  Identities=25%  Similarity=0.371  Sum_probs=26.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhh-HHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVG-RAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig-~~~L   33 (100)
                      ++|.+||||. ...+.++...|||.+.+| +.+.
T Consensus       168 ~~I~VdGGI~-~~~~~~~~~aGAd~~V~G~saif  200 (231)
T 3ctl_A          168 YEIEVDGSCN-QATYEKLMAAGADVFIVGTSGLF  200 (231)
T ss_dssp             CEEEEESCCS-TTTHHHHHHHTCCEEEECTTTTG
T ss_pred             ceEEEECCcC-HHHHHHHHHcCCCEEEEccHHHh
Confidence            4688999997 566778899999999999 7665

>3s1x_A Probable transaldolase; alpha-beta barrel, conformational selection, domain swapping transferase; HET: I22; 1.65A {Thermoplasma acidophilum} PDB: 3s1u_A* 3s1v_A* 3s0c_A* 3s1w_A*

Probab=85.05  E-value=1.3  Score=32.26  Aligned_cols=50  Identities=26%  Similarity=0.282  Sum_probs=39.2

Q ss_pred             EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHHH
Q psy7649           4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLVH   53 (100)
Q Consensus         4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~~   53 (100)
                      +....+|+..++..|...|||.+-+.-.++..+...-  ..|+.++.+.|++
T Consensus       163 IlaAS~Rn~~~v~~aa~~G~d~~Tip~~vl~~l~~hpltd~~~~~F~~Dw~~  214 (223)
T 3s1x_A          163 ILVASIRNPIHVLRSAVIGADVVTVPFNVLKSLMKHPKTDEGLAKFLEDWKK  214 (223)
T ss_dssp             EEEBSCCSHHHHHHHHHHTCSEEEECHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCHHHHHHHHHcCCCEEEeCHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            4556799999999999999999999988988876532  3566666666643

>3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A

Probab=84.93  E-value=0.38  Score=34.52  Aligned_cols=33  Identities=27%  Similarity=0.396  Sum_probs=26.7

Q ss_pred             EEEcCCCCC-hHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           3 VYLDGGIRY-GTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         3 liasGGIr~-g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +++++|||. +.+...++..|||.+.+||++..+
T Consensus       153 ~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a  186 (215)
T 3ve9_A          153 LVISPGVGTQGAKPGIALCHGADYEIVGRSVYQS  186 (215)
T ss_dssp             EEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTS
T ss_pred             EEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCC
Confidence            678999984 335667788899999999999864

>1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A

Probab=84.52  E-value=0.28  Score=35.40  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=26.1

Q ss_pred             eEEEcCCCCChH----------HHHHHHHhCcchHhhhHHHHH
Q psy7649           2 EVYLDGGIRYGT----------DVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         2 ~liasGGIr~g~----------Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +++++|||+...          .+-+++..|||.+.+||++..
T Consensus       184 ~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~  226 (245)
T 1eix_A          184 FKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQ  226 (245)
T ss_dssp             SEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHT
T ss_pred             CEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcC
Confidence            478999998431          255677889999999999875

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=84.45  E-value=0.88  Score=34.09  Aligned_cols=34  Identities=32%  Similarity=0.320  Sum_probs=27.7

Q ss_pred             Ce-EEEcCCCCChHH----HHHHHHhCcchHhhhHHHHHH
Q psy7649           1 ME-VYLDGGIRYGTD----VFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~-liasGGIr~g~D----i~KAlALGAd~v~ig~~~L~a   35 (100)
                      +| |+++||+ +..+    +-.++..||+.|.+||.+..+
T Consensus       222 ~P~Vv~aGG~-~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~  260 (304)
T 1to3_A          222 MPWVILSSGV-DEKLFPRAVRVAMEAGASGFLAGRAVWSS  260 (304)
T ss_dssp             SCEEECCTTS-CTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred             CCeEEEecCC-CHHHHHHHHHHHHHcCCeEEEEehHHhCc
Confidence            47 9999999 5533    667888999999999988754

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=84.15  E-value=0.4  Score=36.66  Aligned_cols=29  Identities=28%  Similarity=0.386  Sum_probs=25.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGR   30 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~   30 (100)
                      +||++ ||+.|+.|+.+++..|||.|.+|+
T Consensus       212 ~pvi~-ggi~t~e~a~~~~~~Gad~i~vg~  240 (393)
T 2qr6_A          212 VPVIA-GGVNDYTTALHMMRTGAVGIIVGG  240 (393)
T ss_dssp             SCEEE-ECCCSHHHHHHHHTTTCSEEEESC
T ss_pred             CCEEE-CCcCCHHHHHHHHHcCCCEEEECC
Confidence            47888 999999999999999999988764

>1vpx_A Protein (transaldolase (EC 2.2.1.2)); TM0295, structural genomics, JOI for structural genomics, JCSG; HET: GOL; 2.40A {Thermotoga maritima} SCOP: c.1.10.1

Probab=83.22  E-value=2.2  Score=31.09  Aligned_cols=50  Identities=22%  Similarity=0.189  Sum_probs=39.9

Q ss_pred             cCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHHHHH
Q psy7649           6 DGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLVHKI   55 (100)
Q Consensus         6 sGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~~el   55 (100)
                      ..++|++.++..+...|+|.+-+.-..+.++...+  .+|+.++.+.|++=|
T Consensus       174 ~AS~r~~~~v~~~~l~G~d~~Tip~~~l~~l~~h~lt~~gv~~F~~d~~~~l  225 (230)
T 1vpx_A          174 AASIRHPMHVVEAALMGVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWKKYL  225 (230)
T ss_dssp             EBSCCSHHHHHHHHHHTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred             eeccCCHHHHHHHHHhCCCEEECCHHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence            34699999999999999999999999999887544  567777776666533

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=82.19  E-value=0.74  Score=33.04  Aligned_cols=32  Identities=13%  Similarity=0.092  Sum_probs=25.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~   34 (100)
                      +|+++.||| +..++..-++. |++.|+ |+.+..
T Consensus       158 ipvvaiGGI-~~~N~~~~l~agga~~v~-gS~i~~  190 (224)
T 1vhc_A          158 LQIMPTGGI-GLHNIRDYLAIPNIVACG-GSWFVE  190 (224)
T ss_dssp             CEEEEBSSC-CTTTHHHHHTSTTBCCEE-ECGGGC
T ss_pred             CeEEEECCc-CHHHHHHHHhcCCCEEEE-EchhcC
Confidence            589999999 55778888888 999998 766654

>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A*

Probab=82.06  E-value=0.24  Score=37.19  Aligned_cols=31  Identities=6%  Similarity=-0.032  Sum_probs=22.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~   32 (100)
                      +++.+|||| |...+..-...|+|.+++|+..
T Consensus       250 v~I~ASGGI-t~~ni~~~~~~GvD~i~vGs~i  280 (294)
T 3c2e_A          250 FLLECSGGL-NLDNLEEYLCDDIDIYSTSSIH  280 (294)
T ss_dssp             CEEEEECCC-CC------CCCSCSEEECGGGT
T ss_pred             eEEEEECCC-CHHHHHHHHHcCCCEEEEechh
Confidence            478999999 9999998899999999999753

>3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis}

Probab=81.78  E-value=2.1  Score=30.80  Aligned_cols=49  Identities=18%  Similarity=0.158  Sum_probs=38.0

Q ss_pred             EEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHH
Q psy7649           3 VYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSL   51 (100)
Q Consensus         3 liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l   51 (100)
                      -+..-.+|+..++..|...|||.+-+.-.++..+...-  ..|+.++.+.|
T Consensus       160 ~ilaAS~R~~~~v~~~a~~G~d~~Tip~~vl~~l~~hpltd~~~~~F~~Dw  210 (212)
T 3r8r_A          160 QIIAASIRHPQHVTEAALRGAHIGTMPLKVIHALTKHPLTDKGIEQFLADW  210 (212)
T ss_dssp             EEEEBSCCSHHHHHHHHHTTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred             EEEEecCCCHHHHHHHHHcCCCEEEcCHHHHHHHHcCCcHHHHHHHHHHHh
Confidence            34556799999999999999999999988998877532  35566665554

>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}

Probab=81.63  E-value=0.96  Score=33.85  Aligned_cols=31  Identities=23%  Similarity=0.246  Sum_probs=27.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAA   32 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~   32 (100)
                      +|+.++||| |...+..-.+.|+|.+.+|...
T Consensus       241 ipi~AsGGI-t~eni~~~a~tGvD~IsVgs~~  271 (286)
T 1x1o_A          241 VPLEASGNM-TLERAKAAAEAGVDYVSVGALT  271 (286)
T ss_dssp             SCEEEESSC-CHHHHHHHHHHTCSEEECTHHH
T ss_pred             CeEEEEcCC-CHHHHHHHHHcCCCEEEEcHHH
Confidence            589999999 5888989999999999998754

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=80.73  E-value=0.65  Score=33.72  Aligned_cols=33  Identities=12%  Similarity=0.035  Sum_probs=28.2

Q ss_pred             CeEEEcCCCCChHHHHHHHH--hCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIG--LGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlA--LGAd~v~ig~~~L~   34 (100)
                      ++|.+||||. ...+.+...  .|||.+.+|+.+..
T Consensus       188 ~~I~vdGGI~-~~~~~~~~~~~aGad~~VvGSaIf~  222 (237)
T 3cu2_A          188 KLINIDGSMT-LELAKYFKQGTHQIDWLVSGSALFS  222 (237)
T ss_dssp             CEEEEESSCC-HHHHHHHHHSSSCCCCEEECGGGGS
T ss_pred             ceEEEECCcC-HHHHHHHHHhCCCCcEEEEeeHHhC
Confidence            4689999997 678888899  99999999987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	100
d1p4ca_	353	c.1.4.1 (A:) Membrane-associated (S)-mandelate deh	1e-17
d1kbia1	414	c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal	2e-17
d1tb3a1	349	c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus	3e-17
d1goxa_	359	c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia	3e-16
d1p0ka_	329	c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomera	6e-11
d1vcfa1	310	c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-i	2e-10
d1yxya1	230	c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p	7e-06
d1ofda2	809	c.1.4.1 (A:431-1239) Alpha subunit of glutamate sy	3e-05
d1y0ea_	222	c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph	3e-05
d1ea0a2	771	c.1.4.1 (A:423-1193) Alpha subunit of glutamate sy	4e-05

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 353

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 73.5 bits (179), Expect = 1e-17
 Identities = 24/51 (47%), Positives = 31/51 (60%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
             V +D G R G+D+ KA+ LGA+ V +GRA L+GLA  G  G   VL  L
Sbjct: 276 KPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLL 326

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 414

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.0 bits (178), Expect = 2e-17
 Identities = 24/51 (47%), Positives = 35/51 (68%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EV++DGG+R GTDV KA+ LGAK V +GR  L+  +  G NG  + ++ L
Sbjct: 307 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEIL 357

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 349

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.6 bits (177), Expect = 3e-17
 Identities = 29/51 (56%), Positives = 37/51 (72%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           +EVY+DGG+R GTDV KA+ LGA+ +F+GR  LWGLA  G +G   VL  L
Sbjct: 273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDIL 323

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 359

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 69.6 bits (169), Expect = 3e-16
 Identities = 27/51 (52%), Positives = 36/51 (70%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL 51
           + V+LDGG+R GTDVFKA+ LGA  VF+GR  ++ LA  G  G  +VLQ +
Sbjct: 280 IPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMM 330

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} Length = 329

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

 Score = 54.8 bits (131), Expect = 6e-11
 Identities = 16/55 (29%), Positives = 25/55 (45%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
             +   GG++   DV KAI LGA    +    L  L  SG  G    +Q ++ ++
Sbjct: 232 STMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEEL 286

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

 Score = 53.3 bits (127), Expect = 2e-10
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI 55
           + +   GG+  GTD  KA+ LGA  + V R  L      G+   A  +   + ++
Sbjct: 235 LPLVASGGVYTGTDGAKALALGADLLAVARPLLRPAL-EGAERVAAWIGDYLEEL 288

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

 Score = 40.2 bits (93), Expect = 7e-06
 Identities = 9/31 (29%), Positives = 13/31 (41%)

Query: 1   MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
           + V  +G I    +  K   LG   + VG A
Sbjct: 184 IAVIAEGKIHSPEEAKKINDLGVAGIVVGGA 214

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} Length = 809

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 6   DGGIRYGTDVFKAIGLGAKYVFVGRAALWGL 36
           DGG++ G DV  A  +GA+    G  A+   
Sbjct: 675 DGGLKTGWDVVMAALMGAEEYGFGSIAMIAE 705

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

 Score = 38.7 bits (89), Expect = 3e-05
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 3   VYLDGGIRYGTDVFKAIGLGAKYVFVGRA 31
           V  +G +       + + LG     VG A
Sbjct: 178 VIAEGNVITPDMYKRVMDLGVHCSVVGGA 206

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} Length = 771

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

 Score = 38.4 bits (89), Expect = 4e-05
 Identities = 12/31 (38%), Positives = 19/31 (61%)

Query: 6   DGGIRYGTDVFKAIGLGAKYVFVGRAALWGL 36
           DGG++ G D+  A  LGA+   +G A+L  +
Sbjct: 648 DGGLKTGRDIVIAAMLGAEEFGIGTASLIAM 678

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	100
d1p0ka_	329	Isopentenyl-diphosphate delta-isomerase {Bacillus	99.9
d1p4ca_	353	Membrane-associated (S)-mandelate dehydrogenase {P	99.89
d1goxa_	359	Glycolate oxidase {Spinach (Spinacia oleracea) [Ta	99.89
d1tb3a1	349	Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI	99.88
d1kbia1	414	Flavocytochrome b2, C-terminal domain {Baker's yea	99.88
d1vcfa1	310	Isopentenyl-diphosphate delta-isomerase {Thermus t	99.82
d1ofda2	809	Alpha subunit of glutamate synthase, central and F	99.48
d1ea0a2	771	Alpha subunit of glutamate synthase, central and F	99.44
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	99.24
d1eepa_	388	Inosine monophosphate dehydrogenase (IMPDH) {Lyme	99.2
d1jr1a1	378	Inosine monophosphate dehydrogenase (IMPDH) {Chine	99.15
d1zfja1	365	Inosine monophosphate dehydrogenase (IMPDH) {Strep	99.1
d2cu0a1	368	Inosine monophosphate dehydrogenase (IMPDH) {Pyroc	99.1
d1pvna1	362	Inosine monophosphate dehydrogenase (IMPDH) {Tritr	99.09
d1juba_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	98.95
d1ep3a_	311	Dihydroorotate dehydrogenase {Lactococcus lactis,	98.68
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.47
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	98.46
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	98.42
d2b4ga1	312	Dihydroorotate dehydrogenase {Trypanosoma brucei [	98.26
d1d3ga_	367	Dihydroorotate dehydrogenase {Human (Homo sapiens)	98.23
d1tv5a1	409	Dihydroorotate dehydrogenase {Plasmodium falciparu	98.01
d1f76a_	336	Dihydroorotate dehydrogenase {Escherichia coli [Ta	97.65
d1wv2a_	243	Thiazole biosynthesis protein ThiG {Pseudomonas ae	97.54
d1djqa1	340	Trimethylamine dehydrogenase, N-terminal domain {M	97.19
d1xm3a_	251	Thiazole biosynthesis protein ThiG {Bacillus subti	97.11
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	97.01
d1znna1	254	Pyridoxal biosynthesis lyase PdxS {Bacillus stearo	96.9
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	96.88
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	96.62
d1hg3a_	224	Triosephosphate isomerase {Archaeon Pyrococcus woe	96.53
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	96.47
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	96.43
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	96.26
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	96.25
d1w0ma_	226	Triosephosphate isomerase {Thermoproteus tenax [Ta	96.01
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	95.91
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	95.84
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	95.52
d1q45a_	380	12-oxophytodienoate reductase (OPR, OYE homolog) {	95.47
d1oyaa_	399	Old yellow enzyme (OYE) {Lager yeast (Saccharomyce	95.32
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	95.29
d1vzwa1	239	Phosphoribosylformimino-5-aminoimidazole carboxami	95.29
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	95.21
d1vhna_	305	Putative flavin oxidoreducatase TM0096 {Thermotoga	95.14
d1gwja_	374	Morphinone reductase {Pseudomonas putida [TaxId: 3	95.13
d1ka9f_	251	Cyclase subunit (or domain) of imidazoleglycerolph	95.08
d1viza_	229	PcrB protein homolog YerE {Bacillus subtilis [TaxI	94.88
d1xi3a_	206	Thiamin phosphate synthase {Archaeon (Pyrococcus f	94.71
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	94.47
d1h5ya_	252	Cyclase subunit (or domain) of imidazoleglycerolph	94.43
d1a53a_	247	Indole-3-glycerophosphate synthase, IPGS {Archaeon	94.38
d1thfd_	253	Cyclase subunit (or domain) of imidazoleglycerolph	94.38
d2f6ua1	231	(S)-3-O-geranylgeranylglyceryl phosphate synthase	94.25
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	93.51
d1icpa_	364	12-oxophytodienoate reductase (OPR, OYE homolog) {	93.48
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	93.26
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	92.94
d1qo2a_	241	Phosphoribosylformimino-5-aminoimidazole carboxami	92.75
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	92.1
d2tpsa_	226	Thiamin phosphate synthase {Bacillus subtilis [Tax	92.01
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	91.21
d1i4na_	251	Indole-3-glycerophosphate synthase, IPGS {Thermoto	90.79
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	90.49
d1vc4a_	254	Indole-3-glycerophosphate synthase, IPGS {Thermus	90.41
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	90.1
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	89.69
d2czda1	206	Orotidine 5'-monophosphate decarboxylase (OMP deca	89.41
d1piia2	254	Indole-3-glycerophosphate synthase, IPGS {Escheric	89.08
d1l6wa_	220	Decameric fructose-6-phosphate aldolase/transaldol	88.06
d1jvna1	323	Cyclase subunit (or domain) of imidazoleglycerolph	87.79
d1vpxa_	218	Decameric fructose-6-phosphate aldolase/transaldol	87.04
d1p1xa_	250	Deoxyribose-phosphate aldolase DeoC {Escherichia c	86.45
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	85.12
d1eixa_	231	Orotidine 5'-monophosphate decarboxylase (OMP deca	84.69
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	83.82
d1dbta_	237	Orotidine 5'-monophosphate decarboxylase (OMP deca	82.53

>d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Bacillus subtilis [TaxId: 1423]

Probab=99.90  E-value=2.4e-24  Score=161.15  Aligned_cols=86  Identities=20%  Similarity=0.181  Sum_probs=83.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH------HH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF------LE   74 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~------~e   74 (100)
                      +|||+|||||+|.||+||||||||+|++||++|+++++.|++||.++++.|++||+..|.+.|++|+.++..      .+
T Consensus       232 v~viadGGIr~g~Dv~KAlalGAdaV~iGr~~l~al~~~G~~gv~~~l~~l~~el~~~m~~~G~~~i~el~~~~lv~~~~  311 (329)
T d1p0ka_         232 STMIASGGLQDALDVAKAIALGASCTGMAGHFLKALTDSGEEGLLEEIQLILEELKLIMTVLGARTIADLQKAPLVIKGE  311 (329)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBHHHHTTCCEEECHH
T ss_pred             ceEEEcCCcccHHHHHHHHHcCCCchhccHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHhCcCCEEeccc
Confidence            589999999999999999999999999999999999999999999999999999999999999999999976      69


Q ss_pred             HHHHHHHcCcCC
Q psy7649          75 LNNLVPTLLLGS   86 (100)
Q Consensus        75 ~~e~~~~lG~~s   86 (100)
                      +++|+.++|++.
T Consensus       312 ~~~~~~~~~~~~  323 (329)
T d1p0ka_         312 THHWLTERGVNT  323 (329)
T ss_dssp             HHHHHHHTTCCS
T ss_pred             HHHHHHHcCCCh
Confidence            999999999984

>d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Membrane-associated (S)-mandelate dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.89  E-value=1.8e-24  Score=162.87  Aligned_cols=72  Identities=36%  Similarity=0.507  Sum_probs=69.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                      +|||+|||||||.||+||||||||+|++|||||+++++.|++||.++++.|++||+..|+++|++|+.++..
T Consensus       276 ~~viasGGIR~G~Dv~KALaLGAd~vgigrp~L~~l~~~G~egv~~~l~~l~~El~~~M~l~G~~~i~eL~~  347 (353)
T d1p4ca_         276 KPVLIDSGFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSP  347 (353)
T ss_dssp             SCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCG
T ss_pred             cceeecCCcCchHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCH
Confidence            489999999999999999999999999999999999999999999999999999999999999999999854

>d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Glycolate oxidase
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.89  E-value=2.9e-24  Score=163.16  Aligned_cols=73  Identities=38%  Similarity=0.600  Sum_probs=70.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                      +|||+|||||||.||+||||||||+|++|||||++++..|++||.++++.|++||+..|+++|++|+.++.+.
T Consensus       280 ~~iiadGGIR~G~Di~KALaLGAd~vgigrp~L~~la~~g~~gv~~~i~~l~~EL~~~M~l~G~~~i~~L~~~  352 (359)
T d1goxa_         280 IPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEFELTMALSGCRSLKEISRS  352 (359)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBTTTCCGG
T ss_pred             cceeeccCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHh
Confidence            5899999999999999999999999999999999999999999999999999999999999999999988654

>d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Hydroxyacid oxidase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.88  E-value=7.1e-24  Score=161.37  Aligned_cols=72  Identities=42%  Similarity=0.734  Sum_probs=69.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                      +|||+|||||+|.||+||||||||+|++|||||+++++.|++||.++++.|++||+..|+++|+.|+.++..
T Consensus       273 ~~iiadGGIR~G~Dv~KALALGA~~V~igrp~L~~la~~G~~gv~~~l~~l~~EL~~~M~l~G~~~i~eL~~  344 (349)
T d1tb3a1         273 IEVYMDGGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAELHRCMTLSGCQSVAEISP  344 (349)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSBGGGCCG
T ss_pred             eeEEeccCcCcHHHHHHHHHcCCCEEEEChHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCH
Confidence            589999999999999999999999999999999999999999999999999999999999999999998754

>d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Flavocytochrome b2, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=9.2e-24  Score=163.98  Aligned_cols=73  Identities=36%  Similarity=0.458  Sum_probs=70.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                      ++||+|||||||.||+||||||||+|++|||||+++++.|++||.++++.|++||+..|+++|++|+.++...
T Consensus       307 ~~viadGGIR~G~DVaKALALGAdaVgigrp~L~~la~~G~egv~~~l~~l~~EL~~~M~l~G~~si~eL~~~  379 (414)
T d1kbia1         307 LEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEIEMSMRLLGVTSIAELKPD  379 (414)
T ss_dssp             BEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBGGGCCGG
T ss_pred             eeEEecCCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCCHHHcCHH
Confidence            5899999999999999999999999999999999999999999999999999999999999999999998653

>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Isopentenyl-diphosphate delta-isomerase
species: Thermus thermophilus [TaxId: 274]

Probab=99.82  E-value=2.6e-21  Score=142.07  Aligned_cols=70  Identities=24%  Similarity=0.287  Sum_probs=67.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||+|||||+|.||+|||+||||+|++|||||+++. .|++||.+.++.|++||+..|.++|++|+.|+.
T Consensus       235 i~Ii~dGGIr~g~Dv~KALalGAdaV~iGr~~l~~~~-~G~~gv~~~l~~l~~El~~~m~~~G~~~i~el~  304 (310)
T d1vcfa1         235 LPLVASGGVYTGTDGAKALALGADLLAVARPLLRPAL-EGAERVAAWIGDYLEELRTALFAIGARNPKEAR  304 (310)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEECGGGHHHHT-TCHHHHHHHHHHHHHHHHHHHHHHTCSSGGGGT
T ss_pred             CeEEeCCCCCchHHHHHHHHhCCCEeeEhHHHHHHhc-cCHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHh
Confidence            5899999999999999999999999999999999877 589999999999999999999999999999985

>d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Synechocystis sp. [TaxId: 1143]

Probab=99.48  E-value=1.2e-15  Score=126.71  Aligned_cols=88  Identities=24%  Similarity=0.240  Sum_probs=79.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      |+|++|||++||.|++||++||||+|++||.+|++++|.         ++.||+++...+++.++.  ....+.|+...+
T Consensus       670 V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~~l~alGCi~~r~Ch~n~CP~GIaTqd~~l~~~~~~--~~~~v~n~~~~~  747 (809)
T d1ofda2         670 VLLRADGGLKTGWDVVMAALMGAEEYGFGSIAMIAEGCIMARVCHTNNCPVGVATQQERLRQRFKG--VPGQVVNFFYFI  747 (809)
T ss_dssp             CEEEEESSCCSHHHHHHHHHTTCSEEECSHHHHHHTTCCCCCCGGGTCCTTSSSCCCHHHHTTCCC--CHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHhCCCchhHhHHHHHHHHCHHhHhhCCCCCCCcccCCCHHHHhhCcC--cHHHHHHHHHHH
Confidence            689999999999999999999999999999999999884         588999999999888764  456799999999


Q ss_pred             HHHHHHHHHHcCcCCCCCC
Q psy7649          72 FLELNNLVPTLLLGSIQPP   90 (100)
Q Consensus        72 ~~e~~e~~~~lG~~s~~~~   90 (100)
                      ..|++++++++|++|+++.
T Consensus       748 ~~e~~~~~a~~G~~s~~el  766 (809)
T d1ofda2         748 AEEVRSLLAHLGYRSLDDI  766 (809)
T ss_dssp             HHHHHHHHHHHTCSCGGGT
T ss_pred             HHHHHHHHHHHcCCCHHHh
Confidence            9999999999999988754

>d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Alpha subunit of glutamate synthase, central and FMN domains
species: Azospirillum brasilense [TaxId: 192]

Probab=99.44  E-value=2.2e-15  Score=124.79  Aligned_cols=88  Identities=24%  Similarity=0.336  Sum_probs=78.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc---------CHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS---------GSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~---------g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      |+|++|||++||.|++||++||||+|++||.+|++++|.         ++.||+++.+.+++.+..  ....+.|+...+
T Consensus       643 V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~~m~alGCi~~r~Ch~~~CP~GIaTqd~~lr~~~~~--~~~~v~n~~~~~  720 (771)
T d1ea0a2         643 VRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASLIAMGCIMVRQCHSNTCPVGVCVQDDKLRQKFVG--TPEKVVNLFTFL  720 (771)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEECCHHHHHHHTCCCCCCTTTTCCTTSSSCCCTTGGGSCCC--CHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCHHHHHHHHHhCCCchHHhHHHHHHhhCHHhhhccCCCCCCeeecCCHHHHhhccC--cHHHHHHHHHHH
Confidence            579999999999999999999999999999999999984         588999998887776642  356788999999


Q ss_pred             HHHHHHHHHHcCcCCCCCC
Q psy7649          72 FLELNNLVPTLLLGSIQPP   90 (100)
Q Consensus        72 ~~e~~e~~~~lG~~s~~~~   90 (100)
                      ..|++++++++|++++++.
T Consensus       721 ~~e~~~~~~~~G~~s~~~l  739 (771)
T d1ea0a2         721 AEEVREILAGLGFRSLNEV  739 (771)
T ss_dssp             HHHHHHHHHHHTCSCSGGG
T ss_pred             HHHHHHHHHHHcCCCHHHh
Confidence            9999999999999988754

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=99.24  E-value=3.6e-12  Score=96.43  Aligned_cols=73  Identities=26%  Similarity=0.318  Sum_probs=58.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC---------------------------------------H
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG---------------------------------------S   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g---------------------------------------~   41 (100)
                      +|||+||||+++.|++|||++|||+|++|++|.-.-.+.|                                       +
T Consensus       202 vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~~~E~pg~~~~~~g~~~k~~~g~~s~~~~~~~~~~~~~~~~~~~~~~  281 (330)
T d1vrda1         202 VPIIADGGIRYSGDIVKALAAGAESVMVGSIFAGTEEAPGETILYQGRKYKAYRGMGSLGAMRSGSADRYGQEGENKFVP  281 (330)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSEEEEETTEEEEECBCCC-----------------------
T ss_pred             ceEEecCCcccCCchheeeeccCceeeecchheeecccCccEEEECCceeeeccccccccccccCchhhccccccccccC
Confidence            6899999999999999999999999999999987544432                                       1


Q ss_pred             HH----------HHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          42 NG----------AARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        42 ~g----------v~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                      +|          +.+.++.+...|+..|.-.|++|+.++...
T Consensus       282 eG~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~~  323 (330)
T d1vrda1         282 EGIEGMVPYKGTVKDVVHQLVGGLRSGMGYIGARTIKELQEK  323 (330)
T ss_dssp             --CBCCEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred             CCcEEecCCCCCHHHHHHHHHHHHHHHHhhcCcchHHHHhcC
Confidence            22          556677788888888888888888887664

>d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]

Probab=99.20  E-value=3.5e-12  Score=98.22  Aligned_cols=72  Identities=24%  Similarity=0.303  Sum_probs=55.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC----------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG----------------------------------------   40 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g----------------------------------------   40 (100)
                      +|||+||||+++.||+||||+|||+|++|++|.-.-.+.|                                        
T Consensus       255 vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~gm~S~~a~~~g~~~~~~~~~~~~~~~  334 (388)
T d1eepa_         255 ICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPSEEIIYNGKKFKSYVGMGSISAMKRGSKSRYFQLENNEPKK  334 (388)
T ss_dssp             CEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTBTTSSSCEEEETTEEEEC----------------------------
T ss_pred             ceEEeccccCcCCceeeeEEeccceeecchhhhcccCCCceEEEeCCcEeecccccccHHHHhccccccccccccccccc
Confidence            5899999999999999999999999999999975543322                                        


Q ss_pred             --HHH----------HHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          41 --SNG----------AARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        41 --~~g----------v~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                        ++|          +.+.+.++...|+..|.-.|+.|+.++..
T Consensus       335 ~~~EG~~~~v~~~G~~~~~~~~l~gglrs~m~y~Ga~~l~e~~~  378 (388)
T d1eepa_         335 LVPEGIEGMVPYSGKLKDILTQLKGGLMSGMGYLGAATISDLKI  378 (388)
T ss_dssp             --------CEECCBCHHHHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred             cccCceEEEeCCCCCHHHHHHHHHHHHHHHhhccCcccHHHHhh
Confidence              021          23455677777888888888888877764

>d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.15  E-value=4.7e-12  Score=97.35  Aligned_cols=73  Identities=21%  Similarity=0.243  Sum_probs=60.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS---------------------------------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~---------------------------------------   41 (100)
                      +|||+||||+++.|++||||+|||+|+||++|.-.-.+.|+                                       
T Consensus       223 vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt~EspG~~~~~~g~~~k~~~gm~S~~a~~~~~~~~~~~~~~~~~~~  302 (378)
T d1jr1a1         223 VPVIADGGIQNVGHIAKALALGASTVMMGSLLAATTEAPGEYFFSDGIRLKKYRGMGSLDAMDKHLSSQNRYFSEADKIK  302 (378)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTSSSCCEESSSCEEEEEECTTSTTTC----------------CC
T ss_pred             CceecccccccCCceeeEEEeecceeeecceeeeeecccCccceecCceeeeccccchhhhhhcccchhhhhcccccccc
Confidence            68999999999999999999999999999999744333220                                       


Q ss_pred             --H----------HHHHHHHHHHHHHhHHHHhcccccHHHhhHH
Q psy7649          42 --N----------GAARVLQSLVHKILPEAVADKVHNAYSIFFL   73 (100)
Q Consensus        42 --~----------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~   73 (100)
                        +          .+.+.+..+...|+..|.-.|++|+.++...
T Consensus       303 ~~eG~~~~v~~~G~v~~~~~~l~gglrs~m~y~G~~~l~e~~~~  346 (378)
T d1jr1a1         303 VAQGVSGAVQDKGSIHKFVPYLIAGIQHSCQDIGAKSLTQVRAM  346 (378)
T ss_dssp             CCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHHH
T ss_pred             CCCccEEeeccCCCHHHHHHHHHHHHHHhhhccCcCcHHHHHhh
Confidence              1          2456677888899999999999999998764

>d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.10  E-value=8.8e-12  Score=95.55  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=60.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS---------------------------------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~---------------------------------------   41 (100)
                      +|||+||||+++.||+||||+|||+|++|++|--.-.+.|+                                       
T Consensus       211 ~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~~EsPG~~~~~~g~~~k~~~Gm~s~~a~~~~~~~r~~~~~~~~~~~  290 (365)
T d1zfja1         211 KTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGTDEAPGETEIYQGRKYKTYRGMGSIAAMKKGSSDRYFQGSVNEANK  290 (365)
T ss_dssp             CEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBSSCCCCEEEETTEEEEEEECTTSHHHHCC--------------CC
T ss_pred             ceEEecCCcCcchhhhhhhhccCCEEEecchhccccCCCCcEEEECCeEeeecCCcccHhhhhccccccccccccccccc
Confidence            58999999999999999999999999999988654443331                                       


Q ss_pred             ---H----------HHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          42 ---N----------GAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        42 ---~----------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                         +          .+.+.+.++...|+..|.-.|+.|+.++..
T Consensus       291 ~~~eG~~~~v~~~G~~~~~~~~l~gglrs~m~y~G~~~l~e~~~  334 (365)
T d1zfja1         291 LVPEGIEGRVAYKGAASDIVFQMLGGIRSGMGYVGAGDIQELHE  334 (365)
T ss_dssp             CCCSBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSSHHHHHH
T ss_pred             ccccCceEEeccCCCHHHHHHHHHHHHHHHHhhcCCCcHHHHhh
Confidence               0          234567788899999999999999999876

>d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.10  E-value=1.1e-11  Score=94.96  Aligned_cols=72  Identities=29%  Similarity=0.319  Sum_probs=60.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCH---------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGS---------------------------------------   41 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~---------------------------------------   41 (100)
                      +|||+||||+++.||+||||+|||+|++|++|--.-.+.|+                                       
T Consensus       217 ~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~~~  296 (368)
T d2cu0a1         217 LYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGTKEAPGKEVIINGRKYKQYRGMGSLGAMMKGGAERYYQGGYMKTRK  296 (368)
T ss_dssp             CEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTBTTCCSCEEEETTEEEEEEECTTSHHHHTC----------CCCCSC
T ss_pred             CeeEecCCCCcCChhheeeeeccceeeccchhccccccCCceEeeCCeEcccccCcccccccccCCcccccccccccccc
Confidence            58999999999999999999999999999987543332220                                       


Q ss_pred             ---H----------HHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          42 ---N----------GAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        42 ---~----------gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                         +          .+.+.+..+...|+..|.-.|++|+.++..
T Consensus       297 ~~~EG~~~~v~~~G~~~~~l~~l~gglrs~m~y~G~~~l~e~~~  340 (368)
T d2cu0a1         297 FVPEGVEGVVPYRGTVSEVLYQLVGGLKAGMGYVGARNIRELKE  340 (368)
T ss_dssp             SSCCBCEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred             cCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHhh
Confidence               1          356778899999999999999999999875

>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Tritrichomonas foetus [TaxId: 5724]

Probab=99.09  E-value=2.4e-11  Score=92.73  Aligned_cols=72  Identities=17%  Similarity=0.208  Sum_probs=60.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC----------------------------------------
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG----------------------------------------   40 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g----------------------------------------   40 (100)
                      +|||+|||||++.|++||||+|||+|++|+.|--.-...|                                        
T Consensus       221 v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~~Espg~~~~~~g~~~k~~~Gm~S~~a~~~~~~~~~~~~~~~~~eG  300 (362)
T d1pvna1         221 IPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARFEESPTRKVTINGSVMKEYWGEGSSRARNWQRYDLGGKQKLSFEEG  300 (362)
T ss_dssp             CCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTBTTSSSCEEEETTEEEEEEECTTSTTTCCGGGGCSSSCSSCSSCCB
T ss_pred             CceeeccccCcccceeEEEEEeccceeehhhhhcccccCCcceeeccceeeeeeccccccccccccccccccccccCCCC
Confidence            5899999999999999999999999999998863322211                                        


Q ss_pred             -------HHHHHHHHHHHHHHHhHHHHhcccccHHHhhH
Q psy7649          41 -------SNGAARVLQSLVHKILPEAVADKVHNAYSIFF   72 (100)
Q Consensus        41 -------~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~   72 (100)
                             .-.+...+..+...|+..|.-.|++|+.++..
T Consensus       301 ~~~~v~~~g~~~~~~~~l~gglrs~~~y~G~~~l~~~~~  339 (362)
T d1pvna1         301 VDSYVPYAGKLKDNVEASLNKVKSTMCNCGALTIPQLQS  339 (362)
T ss_dssp             CEEEEECCBCHHHHHHHHHHHHHHHHHHTTCSBHHHHHH
T ss_pred             cEEEeccCCCHHHHHHHHHHHHHHHHhhcCcCcHHHHHh
Confidence                   01477888999999999999999999999876

>d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme A [TaxId: 1358]

Probab=98.95  E-value=3.4e-10  Score=82.80  Aligned_cols=63  Identities=17%  Similarity=0.318  Sum_probs=54.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||++|||+|+.|++|.+++|||+|.+++.+++    .|++    .++.+.+||+..|...|.+|+.|+.
T Consensus       243 ~~Iig~GGI~s~~Da~~~i~aGA~~Vql~tal~~----~Gp~----~i~~i~~~L~~~m~~~G~~si~e~~  305 (311)
T d1juba_         243 IQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK----EGPA----IFDRIIKELEEIMNQKGYQSIADFH  305 (311)
T ss_dssp             SEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH----HCTH----HHHHHHHHHHHHHHHHTCCSGGGTT
T ss_pred             eeEEecCCcCCHHHHHHHHHcCCCceeeeHhhHh----cChH----HHHHHHHHHHHHHHHcCCCCHHHhc
Confidence            5899999999999999999999999999998876    3543    4667778999999999999988863

>d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.68  E-value=1e-08  Score=74.39  Aligned_cols=67  Identities=21%  Similarity=0.242  Sum_probs=55.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIFFLELNN   77 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~~~e~~e   77 (100)
                      +|||++|||+|+.|+.|.+..|||+|.+||.++.     ++.    .+..+.+||...|.-.|..++.++.. ++++
T Consensus       242 ipIig~GGI~s~~Da~~~i~~GAd~V~ig~~~~~-----~P~----i~~~I~~~L~~~m~~~g~~si~e~~g-~~k~  308 (311)
T d1ep3a_         242 IPIIGMGGVANAQDVLEMYMAGASAVAVGTANFA-----DPF----VCPKIIDKLPELMDQYRIESLESLIQ-EVKE  308 (311)
T ss_dssp             SCEEECSSCCSHHHHHHHHHHTCSEEEECTHHHH-----CTT----HHHHHHHHHHHHHHHTTCSCHHHHHH-HHHH
T ss_pred             eeEEEeCCcCCHHHHHHHHHcCCCEEEecHHHHc-----CCh----HHHHHHHHHHHHHHHcCCCCHHHHHH-HHhc
Confidence            5899999999999999999999999999998752     232    34566789999999999999988855 4444

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.47  E-value=2.8e-08  Score=68.84  Aligned_cols=33  Identities=27%  Similarity=0.317  Sum_probs=31.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|++++|||+|+.|+.|++++|||+|.+|+.+.
T Consensus       184 ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~  216 (230)
T d1yxya1         184 IAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT  216 (230)
T ss_dssp             CCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH
T ss_pred             CeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhc
Confidence            689999999999999999999999999999764

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=98.46  E-value=6.6e-08  Score=70.75  Aligned_cols=55  Identities=15%  Similarity=0.102  Sum_probs=43.2

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcc
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADK   63 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g   63 (100)
                      +|||++|||+|+.|++|.+++|||+|.+++.+++    .|++-    ++.+.++|+..|...|
T Consensus       256 ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~----~G~~~----i~~i~~~L~~~m~~~g  310 (312)
T d1gtea2         256 FPILATGGIDSAESGLQFLHSGASVLQVCSAVQN----QDFTV----IQDYCTGLKALLYLKS  310 (312)
T ss_dssp             CCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHT----SCTTH----HHHHHHHHHHHHHHTT
T ss_pred             CcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhc----cChHH----HHHHHHHHHHHHHHcC
Confidence            5899999999999999999999999999998875    46443    3345556666665544

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.42  E-value=5.3e-08  Score=66.77  Aligned_cols=33  Identities=21%  Similarity=0.265  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +||+++|||+|+.|+.|++++|||.|.+|+++.
T Consensus       176 iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~  208 (222)
T d1y0ea_         176 AKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT  208 (222)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             CcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhc
Confidence            689999999999999999999999999999874

>d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.26  E-value=3.6e-07  Score=66.69  Aligned_cols=61  Identities=23%  Similarity=0.236  Sum_probs=49.4

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHh
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSI   70 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l   70 (100)
                      +|++.|||.|+.|+++.+..||++|.+++.+++    .|+    ..++.+.+||...|.-.|..++.|+
T Consensus       244 ~Iig~GGI~s~~Da~e~i~aGAs~Vqv~Tal~~----~Gp----~~i~~i~~~L~~~l~~~G~~si~e~  304 (312)
T d2b4ga1         244 LVFGCGGVYSGEEAFLHILAGASMVQVGTALHD----EGP----IIFARLNKELQEIMTNKGYKTLDEF  304 (312)
T ss_dssp             EEEEESSCCSHHHHHHHHHHTEEEEEESHHHHH----HCT----THHHHHHHHHHHHHHHHTCCSGGGT
T ss_pred             ceeecCCcCCHHHHHHHHHcCCChheeehhhHh----cCc----HHHHHHHHHHHHHHHHcCCCCHHHH
Confidence            689999999999999999999999999998875    354    3445666777777777777777665

>d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=8.8e-07  Score=66.09  Aligned_cols=63  Identities=17%  Similarity=0.207  Sum_probs=52.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHhh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSIF   71 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l~   71 (100)
                      +|||+.|||.|+.|+++-+..|||+|.+++.+++    .|+    ..++.+.++|+..|--.|..++.++.
T Consensus       299 ipIig~GGI~s~~Da~e~i~aGAs~VQi~Ta~~~----~Gp----~ii~~I~~~L~~~l~~~G~~si~dl~  361 (367)
T d1d3ga_         299 VPIIGVGGVSSGQDALEKIRAGASLVQLYTALTF----WGP----PVVGKVKRELEALLKEQGFGGVTDAI  361 (367)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH----HCT----HHHHHHHHHHHHHHHHTTCSSHHHHT
T ss_pred             ccEEEECCCCCHHHHHHHHHcCCCHHHhhHHHHh----cCc----HHHHHHHHHHHHHHHHcCCCCHHHhc
Confidence            5899999999999999999999999999998875    354    34456677888888888888888764

>d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.01  E-value=1.9e-06  Score=65.67  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=48.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHhHHHHhcccccHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKILPEAVADKVHNAYSI   70 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~~~m~l~g~~n~~~l   70 (100)
                      +|||..|||.|+.|+++-+..||++|-+++.+.+-    |+.    .++.+.+||...|--.|..|+.++
T Consensus       343 ipIIGvGGI~s~~Da~e~i~AGAs~VQv~T~li~~----Gp~----~v~~I~~~L~~~l~~~g~~~i~e~  404 (409)
T d1tv5a1         343 IPIIASGGIFSGLDALEKIEAGASVCQLYSCLVFN----GMK----SAVQIKRELNHLLYQRGYYNLKEA  404 (409)
T ss_dssp             SCEEEESSCCSHHHHHHHHHTTEEEEEESHHHHHH----GGG----HHHHHHHHHHHHHHHHTCSSSGGG
T ss_pred             ceEEEECCCCCHHHHHHHHHcCCCHHhhhhHHHhc----ChH----HHHHHHHHHHHHHHHcCCCCHHHh
Confidence            58999999999999999999999999999988763    442    244556677766666777666654

>d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydroorotate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=97.65  E-value=1.9e-05  Score=57.92  Aligned_cols=42  Identities=19%  Similarity=0.189  Sum_probs=35.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAAR   46 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~   46 (100)
                      +|||.+|||.|+.|+.+-+..||++|.+++.+++    .|+.=+.+
T Consensus       290 ipIIG~GGI~s~~Da~e~i~aGAsaVQv~Tal~~----~Gp~ii~~  331 (336)
T d1f76a_         290 LPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF----KGPPLIKE  331 (336)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH----HCHHHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHcCCcHHHHHHHHHh----cChHHHHH
Confidence            5899999999999999999999999999998764    46644443

>d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.54  E-value=2.6e-05  Score=56.38  Aligned_cols=44  Identities=23%  Similarity=0.299  Sum_probs=36.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARV   47 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~   47 (100)
                      +|+|+|+||.++.|+.+|+.||+|.|.+.+.+-.+   ..+....+.
T Consensus       180 vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa~A---~dP~~mA~A  223 (243)
T d1wv2a_         180 VPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHA---KDPVMMAEA  223 (243)
T ss_dssp             SCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTS---SSHHHHHHH
T ss_pred             cceEeecccCCHHHHHHHHHccCCEEEechHhhcC---CCHHHHHHH
Confidence            68999999999999999999999999999987543   345444433

>d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Trimethylamine dehydrogenase, N-terminal domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.19  E-value=9.2e-05  Score=54.55  Aligned_cols=33  Identities=15%  Similarity=0.142  Sum_probs=31.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +|||+.|||+++.++.++|+-| ||+|++||+++
T Consensus       292 ~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~i  325 (340)
T d1djqa1         292 KPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSI  325 (340)
T ss_dssp             SCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHH
T ss_pred             CeEEEECCCCCHHHHHHHHHCCCccchhhHHHHH
Confidence            5899999999999999999999 99999999997

>d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: ThiG-like
family: ThiG-like
domain: Thiazole biosynthesis protein ThiG
species: Bacillus subtilis [TaxId: 1423]

Probab=97.11  E-value=9.8e-05  Score=53.43  Aligned_cols=33  Identities=33%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|||+|+||.++.|++.|+.||+|+|.+-+.+-
T Consensus       178 vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA  210 (251)
T d1xm3a_         178 VPVIVDAGIGSPKDAAYAMELGADGVLLNTAVS  210 (251)
T ss_dssp             SCBEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred             ccEEEecCCCCHHHHHHHHHccCCEEEechhhh
Confidence            689999999999999999999999999998774

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.01  E-value=0.00074  Score=48.72  Aligned_cols=56  Identities=20%  Similarity=0.112  Sum_probs=43.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHHHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLVHKIL   56 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~~el~   56 (100)
                      +|+++..||+++.|+.+++.-|||.|.+|++++..+....  .+...+.+..+.++|+
T Consensus       206 ~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk~i~~~~~~~~~~~~~i~~~v~~lk  263 (267)
T d1qopa_         206 APALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKNLASPKQMLAELRSFVSAMK  263 (267)
T ss_dssp             CCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCceeecccCCHHHHHHHHhcCCCEEEECHHHHHHHHhcccCHHHHHHHHHHHHHHHH
Confidence            5899999999999999999999999999999999876532  2333444445555554

>d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: PdxS-like
domain: Pyridoxal biosynthesis lyase PdxS
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.90  E-value=0.00018  Score=52.01  Aligned_cols=34  Identities=29%  Similarity=0.423  Sum_probs=31.1

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+|++|||.|+.|.+++.-||+|.|++++.+..
T Consensus       190 v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~  223 (254)
T d1znna1         190 VVNFAAGGVTTPADAALMMHLGADGVFVGSGIFK  223 (254)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGG
T ss_pred             ceEEecCCCCChhhHHHHHHcCCCEEEEcchhhc
Confidence            5899999999999999999999999999986654

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=96.88  E-value=0.00028  Score=51.98  Aligned_cols=33  Identities=30%  Similarity=0.381  Sum_probs=31.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|+|.++.++-++|+-| ||+|++||+++
T Consensus       277 ~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~i  310 (337)
T d1z41a1         277 MATGAVGMITDGSMAEEILQNGRADLIFIGRELL  310 (337)
T ss_dssp             CEEEECSSCCSHHHHHHHHHTTSCSEEEECHHHH
T ss_pred             ceEEEeCCcCCHHHHHHHHHCCCcceehhhHHHH
Confidence            5899999999999999999999 99999999997

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.62  E-value=0.00043  Score=50.83  Aligned_cols=33  Identities=18%  Similarity=0.134  Sum_probs=31.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|+|.++.++-++|+-| ||+|++||+++
T Consensus       281 ~pvi~~G~i~~~~~ae~~l~~g~~D~V~~gR~~i  314 (330)
T d1ps9a1         281 LPLVTTNRINDPQVADDILSRGDADMVSMARPFL  314 (330)
T ss_dssp             SCEEECSSCCSHHHHHHHHHTTSCSEEEESTHHH
T ss_pred             ceEEEeCCCCCHHHHHHHHHCCCcchhHhhHHHH
Confidence            5899999999999999999999 99999999987

>d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Archaeon Pyrococcus woesei [TaxId: 2262]

Probab=96.53  E-value=0.0005  Score=47.65  Aligned_cols=35  Identities=34%  Similarity=0.413  Sum_probs=32.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +||+..|||.++.|+.+++.+|+|.|.+|+.++.+
T Consensus       176 v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a  210 (224)
T d1hg3a_         176 VKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKA  210 (224)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTC
T ss_pred             cceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecC
Confidence            58999999999999999999999999999999864

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.47  E-value=0.0012  Score=47.29  Aligned_cols=40  Identities=25%  Similarity=0.247  Sum_probs=36.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG   40 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g   40 (100)
                      +|+.+.-||+|+.|+.+++.-|||.|.+|+.++..+...+
T Consensus       192 ~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~~i~~~~  231 (248)
T d1geqa_         192 NKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKG  231 (248)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHG
T ss_pred             cceeeecccCCHHHHHHHHhcCCCEEEECHHHHHHHHHhC
Confidence            4899999999999999999999999999999999886544

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.43  E-value=0.0043  Score=44.45  Aligned_cols=58  Identities=21%  Similarity=0.205  Sum_probs=44.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC-HHHHHHHHHHHHHHHhHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG-SNGAARVLQSLVHKILPE   58 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g-~~gv~~~i~~l~~el~~~   58 (100)
                      +|+.+.-||+++.|+-+..-.|||.|.+|+.++..+.... .+...+.++.+.++++..
T Consensus       201 ~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~i~~~~~~~~~~~~~~~~~~~lk~a  259 (261)
T d1rd5a_         201 KPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQGLRRLEEYARGMKNA  259 (261)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            5899999999999998888889999999999999887542 222344455555555543

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=96.26  E-value=0.001  Score=46.76  Aligned_cols=34  Identities=18%  Similarity=0.237  Sum_probs=31.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++||+++..|+.+++-.|++.|.+|+.|.+
T Consensus       196 ~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~  229 (251)
T d1ka9f_         196 VPVIASGGAGRMEHFLEAFQAGAEAALAASVFHF  229 (251)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             eeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHc
Confidence            5899999999999999999999999999987753

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=96.25  E-value=0.0011  Score=46.77  Aligned_cols=34  Identities=15%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++||+++..|+.++...|++.|.+|+.|.+
T Consensus       196 ~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~  229 (253)
T d1thfd_         196 LPIIASGGAGKMEHFLEAFLAGADAALAASVFHF  229 (253)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             ceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHc
Confidence            5899999999999999999999999999998753

>d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Triosephosphate isomerase (TIM)
family: Triosephosphate isomerase (TIM)
domain: Triosephosphate isomerase
species: Thermoproteus tenax [TaxId: 2271]

Probab=96.01  E-value=0.0014  Score=45.57  Aligned_cols=35  Identities=34%  Similarity=0.478  Sum_probs=32.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      +||++.|||.++.|+..++.+|+|.|.+|+.++.+
T Consensus       174 i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a  208 (226)
T d1w0ma_         174 VSVITGAGIESGDDVAAALRLGTRGVLLASAAVKA  208 (226)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTC
T ss_pred             ceEEEecCcCChHHHHHHhcCCCCEEEechheecC
Confidence            58999999999999999999999999999999854

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=95.91  E-value=0.0019  Score=45.54  Aligned_cols=34  Identities=21%  Similarity=0.288  Sum_probs=31.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|++++||+++..|+-++...|++.|.+|+.|.+
T Consensus       198 ~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~  231 (252)
T d1h5ya_         198 IPVIASGGAGRVEHFYEAAAAGADAVLAASLFHF  231 (252)
T ss_dssp             SCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred             CCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHc
Confidence            5899999999999999999999999999988864

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.84  E-value=0.002  Score=44.80  Aligned_cols=34  Identities=29%  Similarity=0.358  Sum_probs=29.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHh---CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL---GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL---GAd~v~ig~~~L~   34 (100)
                      +|++++|||++..|+-+.-.+   |++.|.+|+.+..
T Consensus       190 ~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~  226 (239)
T d1vzwa1         190 RPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYA  226 (239)
T ss_dssp             SCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHT
T ss_pred             ceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHC
Confidence            589999999999999887676   9999999998754

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=95.52  E-value=0.0035  Score=46.28  Aligned_cols=34  Identities=12%  Similarity=-0.071  Sum_probs=30.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L~   34 (100)
                      +|+|+|||+.+..|+.+++.. |+++|.+|+.|-+
T Consensus       265 iPiIasGGi~s~~di~~ll~~~~v~gv~~gs~~~~  299 (323)
T d1jvna1         265 IPVIASSGAGVPEHFEEAFLKTRADACLGAGMFHR  299 (323)
T ss_dssp             SCEEECSCCCSHHHHHHHHHHSCCSEEEESHHHHT
T ss_pred             CCEEEECCCCCHHHHHHHHHhCCCeEEEEhhHHHc
Confidence            699999999999999999876 6999999988754

>d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]

Probab=95.47  E-value=0.0037  Score=46.19  Aligned_cols=32  Identities=25%  Similarity=0.258  Sum_probs=29.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||+++||+ ++.+..++|+-| ||+|++||+++
T Consensus       308 ~pv~~~Gg~-~~~~ae~~l~~G~~DlV~~gR~li  340 (380)
T d1q45a_         308 GTFMSSGGF-NKELGMQAVQQGDADLVSYGRLFI  340 (380)
T ss_dssp             SCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             CcEEeCCCC-CHHHHHHHHHcCCccchhhhHHHH
Confidence            489999998 689999999998 99999999998

>d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Old yellow enzyme (OYE)
species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]

Probab=95.32  E-value=0.0035  Score=46.89  Aligned_cols=33  Identities=15%  Similarity=0.081  Sum_probs=29.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHh-CcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGL-GAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlAL-GAd~v~ig~~~L   33 (100)
                      +|||+.|||.+..++.+.+.- +||+|++||+++
T Consensus       318 ~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~li  351 (399)
T d1oyaa_         318 GPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFI  351 (399)
T ss_dssp             SCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHH
T ss_pred             CCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHH
Confidence            589999999999999888876 599999999987

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=95.29  E-value=0.004  Score=43.28  Aligned_cols=33  Identities=36%  Similarity=0.401  Sum_probs=29.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC------cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG------AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG------Ad~v~ig~~~L   33 (100)
                      +|++++||+++..|+.++..+|      ++.|.+|+.|.
T Consensus       189 ~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al~  227 (241)
T d1qo2a_         189 VKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFL  227 (241)
T ss_dssp             CEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHH
T ss_pred             ceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHHH
Confidence            5899999999999999999887      67788998875

>d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=95.29  E-value=0.0059  Score=42.26  Aligned_cols=33  Identities=39%  Similarity=0.549  Sum_probs=30.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+.++||||+-.|+-+.+.+||+-|.+++...
T Consensus        75 ~pi~vGGGIrs~~~~~~ll~~Ga~kVvi~s~~~  107 (239)
T d1vzwa1          75 IKVELSGGIRDDDTLAAALATGCTRVNLGTAAL  107 (239)
T ss_dssp             SEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred             cceEeecccccchhhhhhhccccccchhhHHhh
Confidence            589999999999999999999999999998654

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.21  E-value=0.013  Score=40.33  Aligned_cols=50  Identities=22%  Similarity=0.260  Sum_probs=38.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      ++++.+||| +..++..-+..||.+|++|+.+.    ....+.+.+..+.+.+.+
T Consensus       150 i~~iptGGI-~~~n~~~~l~aga~avg~Gs~l~----~~~~~~i~~~a~~~~~~~  199 (202)
T d1wa3a1         150 VKFVPTGGV-NLDNVCEWFKAGVLAVGVGSALV----KGTPDEVREKAKAFVEKI  199 (202)
T ss_dssp             CEEEEBSSC-CTTTHHHHHHHTCSCEEECHHHH----CSCHHHHHHHHHHHHHHH
T ss_pred             CcEEeeCCC-CHHHHHHHHHCCCeEEEEchhhc----CCCHHHHHHHHHHHHHHH
Confidence            579999999 88999999999999999997654    334566666555554443

>d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Putative flavin oxidoreducatase TM0096
species: Thermotoga maritima [TaxId: 2336]

Probab=95.14  E-value=0.0028  Score=45.91  Aligned_cols=33  Identities=24%  Similarity=0.420  Sum_probs=29.8

Q ss_pred             CeEEEcCCCCChHHHHHHHH-hCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIG-LGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlA-LGAd~v~ig~~~L   33 (100)
                      +|+++.|||.|..|+.+++. -|+|.|++||..+
T Consensus       180 ipvi~NGdI~s~~d~~~~l~~tg~dgVMiGRgal  213 (305)
T d1vhna_         180 IPTFVSGDIFTPEDAKRALEESGCDGLLVARGAI  213 (305)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHHCCSEEEESGGGT
T ss_pred             hhhhcccccccHHHHHHHHHhcCCCeEehhHHHH
Confidence            68999999999999999997 4999999998644

>d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Morphinone reductase
species: Pseudomonas putida [TaxId: 303]

Probab=95.13  E-value=0.0059  Score=45.20  Aligned_cols=32  Identities=16%  Similarity=0.065  Sum_probs=29.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      +||++.|+| ++.++.++|+-| ||+|++||+++
T Consensus       297 ~pvi~~G~i-~~~~ae~~l~~g~aDlV~~gR~~i  329 (374)
T d1gwja_         297 GGLIYCGNY-DAGRAQARLDDNTADAVAFGRPFI  329 (374)
T ss_dssp             SEEEEESSC-CHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             CCEEEECCc-CHHHHHHHHHcCCCcEehhhHHHH
Confidence            589999999 789999999998 99999999998

>d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermus thermophilus [TaxId: 274]

Probab=95.08  E-value=0.0069  Score=42.33  Aligned_cols=33  Identities=33%  Similarity=0.370  Sum_probs=30.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+.++|||||-.|+-+.+..||+-|.+++..+
T Consensus        75 ~pi~vgGGIrs~e~~~~ll~~Ga~kVii~s~~~  107 (251)
T d1ka9f_          75 IPLTVGGGVRSLEDARKLLLSGADKVSVNSAAV  107 (251)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred             cchheeccccCHHHHHHHHHcCCCEEEECchhh
Confidence            589999999999999999999999999998765

>d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: PcrB protein homolog YerE
species: Bacillus subtilis [TaxId: 1423]

Probab=94.88  E-value=0.0075  Score=41.82  Aligned_cols=33  Identities=24%  Similarity=0.357  Sum_probs=28.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++.+||+|+.++ |.++-|||.|.+|+.+..
T Consensus       182 ~Pl~VGFGIst~e~a-~~v~~~ADgVVVGSAiv~  214 (229)
T d1viza_         182 STLFYGGGIKDAETA-KQYAEHADVIVVGNAVYE  214 (229)
T ss_dssp             SEEEEESSCCSHHHH-HHHHTTCSEEEECTHHHH
T ss_pred             cceEEEcccCCHHHH-HHHHcCCCEEEECHHHHh
Confidence            489999999999998 556679999999998753

>d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]

Probab=94.71  E-value=0.015  Score=39.28  Aligned_cols=49  Identities=20%  Similarity=0.216  Sum_probs=36.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVH   53 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~   53 (100)
                      +||++-||| |..++-..+..||+.|.+.+.+..+   ..+....+.+....+
T Consensus       154 ~Pv~AiGGI-~~~ni~~~~~~Ga~gvAvis~I~~~---~dp~~~~~~l~~~~~  202 (206)
T d1xi3a_         154 IPVVAIGGI-NKDNAREVLKTGVDGIAVISAVMGA---EDVRKATEELRKIVE  202 (206)
T ss_dssp             SCEEEESSC-CTTTHHHHHTTTCSEEEESHHHHTS---SSHHHHHHHHHHHHH
T ss_pred             CCEEEECCC-CHHHHHHHHHhCCCEEEEhHHHHCC---CCHHHHHHHHHHHHH
Confidence            589999999 7778999999999999999888743   345444444444333

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=94.47  E-value=0.013  Score=42.16  Aligned_cols=37  Identities=24%  Similarity=0.209  Sum_probs=31.9

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhcc
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHS   39 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~   39 (100)
                      +|+.+.=||+++.|+.++ + |||.|.+|+.++..+...
T Consensus       203 ~Pv~vGFGIs~~e~v~~~-~-~ADGvIVGSAiV~~i~e~  239 (271)
T d1ujpa_         203 LPVAVGFGVSGKATAAQA-A-VADGVVVGSALVRALEEG  239 (271)
T ss_dssp             SCEEEESCCCSHHHHHHH-T-TSSEEEECHHHHHHHHTT
T ss_pred             CCeEEeCCCCCHHHHHHh-C-CCCEEEEcHHHHHHHHhC
Confidence            588999999999998654 4 999999999999988754

>d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=94.43  E-value=0.013  Score=41.08  Aligned_cols=33  Identities=33%  Similarity=0.409  Sum_probs=30.6

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+.++||||+-.|+-+.+..||+-|.+++..+
T Consensus        77 ~pi~~gGGIr~~e~~~~ll~~G~~kVii~s~~~  109 (252)
T d1h5ya_          77 IPVLVGGGVRSLEDATTLFRAGADKVSVNTAAV  109 (252)
T ss_dssp             SCEEEESSCCSHHHHHHHHHHTCSEEEESHHHH
T ss_pred             CcceeecccchhhhhhhHhhcCCcEEEeccccc
Confidence            589999999999999999999999999998655

>d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=94.38  E-value=0.014  Score=41.61  Aligned_cols=33  Identities=15%  Similarity=0.252  Sum_probs=31.2

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      .+|+-+||.++.|+-+....|+|+|.+|..++.
T Consensus       205 ~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk  237 (247)
T d1a53a_         205 VKVAESGISERNEIEELRKLGVNAFLIGSSLMR  237 (247)
T ss_dssp             EEEEESCCCCHHHHHHHHHTTCCEEEECHHHHH
T ss_pred             eEEEecCCCCHHHHHHHHHCCCCEEEECHHHcC
Confidence            578999999999999999999999999999986

>d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Thermotoga maritima [TaxId: 2336]

Probab=94.38  E-value=0.023  Score=39.59  Aligned_cols=46  Identities=22%  Similarity=0.196  Sum_probs=36.5

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSL   51 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l   51 (100)
                      +|+.+.||||+-.|+-+.+..||+-|.+|+..+.     .++-+.+..+.+
T Consensus        75 ~pi~vgGGIr~~e~i~~~l~~Ga~kviigs~~~~-----n~~~l~~~~~~~  120 (253)
T d1thfd_          75 IPFTVGGGIHDFETASELILRGADKVSINTAAVE-----NPSLITQIAQTF  120 (253)
T ss_dssp             SCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHH-----CTHHHHHHHHHH
T ss_pred             ccceeecccccchhhhhHHhcCCCEEEEChHHhh-----ChHHHHHHHHHc
Confidence            5899999999999999999999999999987762     334444444444

>d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=94.25  E-value=0.01  Score=40.91  Aligned_cols=32  Identities=19%  Similarity=0.312  Sum_probs=27.8

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+++.+||+|+.++.+.. -+||.|.+|+.+.
T Consensus       188 ~Pv~VGFGI~s~e~a~~~~-~~ADgvIVGSaiv  219 (231)
T d2f6ua1         188 ARLFYGGGIDSREKAREML-RYADTIIVGNVIY  219 (231)
T ss_dssp             SEEEEESCCCSHHHHHHHH-HHSSEEEECHHHH
T ss_pred             CCEEEEeCcCCHHHHHHHH-hcCCEEEEChHHh
Confidence            5899999999999996654 5899999999874

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=93.51  E-value=0.012  Score=38.43  Aligned_cols=49  Identities=16%  Similarity=0.222  Sum_probs=35.4

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL   56 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~   56 (100)
                      +++..+||++ +.++-+++..|||.+.+||++..+   ..+   .+..+.++++++
T Consensus       162 ~~i~~~gGi~-~~~~~~~~~~Gad~iVVGr~I~~a---~dp---~~a~~~~~~~i~  210 (213)
T d1q6oa_         162 FKVTVTGGLA-LEDLPLFKGIPIHVFIAGRSIRDA---ASP---VEAARQFKRSIA  210 (213)
T ss_dssp             CEEEEESSCC-GGGGGGGTTSCCSEEEESHHHHTS---SCH---HHHHHHHHHHHH
T ss_pred             ceEecCCCcC-cCCHHHHHHcCCCEEEEChhhcCC---CCH---HHHHHHHHHHHH
Confidence            3678889885 778999999999999999988643   334   344445555554

>d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 12-oxophytodienoate reductase (OPR, OYE homolog)
species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]

Probab=93.48  E-value=0.021  Score=41.95  Aligned_cols=32  Identities=25%  Similarity=0.194  Sum_probs=28.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      .|+++.||+ ++.++.++|+-| ||+|++||+++
T Consensus       293 ~~vi~~g~~-~~~~ae~~l~~g~aD~V~~gR~~i  325 (364)
T d1icpa_         293 GTFIVAGGY-DREDGNRALIEDRADLVAYGRLFI  325 (364)
T ss_dssp             SCEEEESSC-CHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             CCEEEECCC-CHHHHHHHHHcCCCceehhHHHHH
Confidence            367888876 889999999987 99999999998

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=93.26  E-value=0.021  Score=41.95  Aligned_cols=31  Identities=23%  Similarity=0.222  Sum_probs=26.8

Q ss_pred             eEEEcCCCCChHHHHHHHHhC-cchHhhhHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLG-AKYVFVGRAAL   33 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALG-Ad~v~ig~~~L   33 (100)
                      |+++ +|+.|+.++-++|+-| ||+|++||+++
T Consensus       295 ~vi~-~G~~t~~~ae~~l~~G~~DlV~~gR~li  326 (363)
T d1vyra_         295 VIIG-AGAYTAEKAEDLIGKGLIDAVAFGRDYI  326 (363)
T ss_dssp             EEEE-ESSCCHHHHHHHHHTTSCSEEEESHHHH
T ss_pred             eEEe-cCCCCHHHHHHHHHCCCcceehhhHHHH
Confidence            4444 5577999999999999 89999999998

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=92.94  E-value=0.027  Score=39.58  Aligned_cols=29  Identities=38%  Similarity=0.534  Sum_probs=25.3

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGR   30 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~   30 (100)
                      .|=+||||||..|+.+.+.+||+-+|.+.
T Consensus       194 gIKasGGIrt~~~a~~~i~aGa~rIGtSs  222 (234)
T d1n7ka_         194 GVKASGGIRSGIDAVLAVGAGADIIGTSS  222 (234)
T ss_dssp             EEEEESSCCSHHHHHHHHHTTCSEEEETT
T ss_pred             cEEeeCCcCCHHHHHHHHHccCceeecch
Confidence            46789999999999999999999876543

>d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA
species: Thermotoga maritima [TaxId: 2336]

Probab=92.75  E-value=0.032  Score=38.48  Aligned_cols=33  Identities=27%  Similarity=0.267  Sum_probs=30.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAAL   33 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L   33 (100)
                      +|+.+.||||+-.|+-+.+..||+-|.+++.+.
T Consensus        74 ~pl~~gGGI~s~~~~~~~~~~Ga~kVvi~s~~~  106 (241)
T d1qo2a_          74 EHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVL  106 (241)
T ss_dssp             GGEEEESSCCSHHHHHHHHHTTCCEEEECHHHH
T ss_pred             cchhhhhhhhhhhhhhhccccccceEecCcccc
Confidence            478999999999999999999999999998654

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=92.10  E-value=0.034  Score=38.24  Aligned_cols=48  Identities=19%  Similarity=0.297  Sum_probs=33.7

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      ++|.+||||.. ..+-+....|||.+.+|+.+..   ...   ..+.++.+++.+
T Consensus       169 ~~I~vDGGIn~-~~i~~l~~aGad~~V~Gsaif~---~~d---~~~~i~~lr~~i  216 (217)
T d2flia1         169 FDIEVDGGVDN-KTIRACYEAGANVFVAGSYLFK---ASD---LVSQVQTLRTAL  216 (217)
T ss_dssp             CEEEEESSCCT-TTHHHHHHHTCCEEEESHHHHT---SSC---HHHHHHHHHHHH
T ss_pred             eEEEEeCCCCH-HHHHHHHHCCCCEEEEchHHhC---CCC---HHHHHHHHHHhh
Confidence            36889999964 4688888999999999976542   222   455565665543

>d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Thiamin phosphate synthase
family: Thiamin phosphate synthase
domain: Thiamin phosphate synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=92.01  E-value=0.054  Score=37.18  Aligned_cols=33  Identities=24%  Similarity=0.080  Sum_probs=30.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~   34 (100)
                      +|+++-||| |..++-+++..||+.|.+.+.+..
T Consensus       172 ~Pv~AiGGI-~~~ni~~l~~~Ga~giAvis~I~~  204 (226)
T d2tpsa_         172 IPIVGIGGI-TIDNAAPVIQAGADGVSMISAISQ  204 (226)
T ss_dssp             CCEEEESSC-CTTTSHHHHHTTCSEEEESHHHHT
T ss_pred             CCEEEecCC-CHHHHHHHHHhCCCEEEEhHHhhc
Confidence            589999999 889999999999999999887764

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.21  E-value=0.048  Score=38.07  Aligned_cols=29  Identities=28%  Similarity=0.286  Sum_probs=25.5

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGR   30 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~   30 (100)
                      .|=+||||||..|+.+.+.+||+-+|.+.
T Consensus       177 ~iKasGGIrt~~~a~~~i~~Ga~RiGtSs  205 (225)
T d1mzha_         177 KVKASGGIRDLETAISMIEAGADRIGTSS  205 (225)
T ss_dssp             EEEEESSCCSHHHHHHHHHTTCSEEEESC
T ss_pred             eEECcCCCCCHHHHHHHHHhchhheecCc
Confidence            46799999999999999999999877654

>d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermotoga maritima [TaxId: 2336]

Probab=90.79  E-value=0.088  Score=37.36  Aligned_cols=33  Identities=21%  Similarity=0.292  Sum_probs=28.7

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      .+++-+||+++.|+ +.+.-|+|+|.+|..+|.+
T Consensus       204 ~~IaESGI~~~~d~-~~l~~G~davLIG~sLm~~  236 (251)
T d1i4na_         204 VVVAESGIKDPREL-KDLRGKVNAVLVGTSIMKA  236 (251)
T ss_dssp             EEEEESCCCCGGGH-HHHTTTCSEEEECHHHHHC
T ss_pred             EEEEcCCCCCHHHH-HHHHhCCCEEEEChHHhCC
Confidence            57899999999997 5567899999999999864

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=90.49  E-value=0.072  Score=36.75  Aligned_cols=30  Identities=23%  Similarity=0.320  Sum_probs=25.9

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRA   31 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~   31 (100)
                      .|=+||||||..|+.+.+.+||+-+|.++.
T Consensus       177 ~iKasGGIrt~~~a~~~l~aGa~riGtSs~  206 (211)
T d1ub3a_         177 QVKAAGGIRDRETALRMLKAGASRLGTSSG  206 (211)
T ss_dssp             EEEEESSCCSHHHHHHHHHTTCSEEEETTH
T ss_pred             eEECcCCCCCHHHHHHHHHHhhhHhccCcH
Confidence            466899999999999999999998876544

>d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Thermus thermophilus [TaxId: 274]

Probab=90.41  E-value=0.047  Score=38.85  Aligned_cols=33  Identities=15%  Similarity=0.196  Sum_probs=28.7

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      .+|+.+||.|+.|+ +.+.-|+|+|.+|..+|.+
T Consensus       210 i~IsESGI~~~~dv-~~l~~g~davLIGesLm~~  242 (254)
T d1vc4a_         210 VLVAESGYSRKEEL-KALEGLFDAVLIGTSLMRA  242 (254)
T ss_dssp             EEEEESCCCSHHHH-HTTTTTCSEEEECHHHHTS
T ss_pred             EEEEccCCCCHHHH-HHHHcCCCEEEEChhhcCC
Confidence            47899999999997 5567899999999999854

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=90.10  E-value=0.069  Score=37.86  Aligned_cols=28  Identities=36%  Similarity=0.339  Sum_probs=24.6

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVG   29 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig   29 (100)
                      .|=+||||||..|+.+.+.+||+-+|.+
T Consensus       210 giKasGGIrt~~~a~~~i~aGa~riGtS  237 (251)
T d1o0ya_         210 GVKASGGIRTFEDAVKMIMYGADRIGTS  237 (251)
T ss_dssp             EEEEESSCCSHHHHHHHHHTTCSEEEES
T ss_pred             eEeccCCcCCHHHHHHHHHHhhHHhCCC
Confidence            3568999999999999999999987654

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=89.69  E-value=0.12  Score=35.30  Aligned_cols=49  Identities=14%  Similarity=0.301  Sum_probs=35.3

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL   56 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~   56 (100)
                      +.|.+||||.. ..+-+....|||.+.+|+.+..   ...   ....++.+++.++
T Consensus       171 ~~I~VDGGIn~-~~i~~l~~aGad~iV~GS~if~---~~d---~~~~i~~Lr~~i~  219 (221)
T d1tqxa_         171 LNIQVDGGLNI-ETTEISASHGANIIVAGTSIFN---AED---PKYVIDTMRVSVQ  219 (221)
T ss_dssp             CEEEEESSCCH-HHHHHHHHHTCCEEEESHHHHT---CSS---HHHHHHHHHHHHH
T ss_pred             cceEEEcccCH-HhHHHHHHcCCCEEEEChHHHC---CCC---HHHHHHHHHHHHh
Confidence            35789999966 4688899999999999987543   223   3556666666553

>d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=89.41  E-value=0.14  Score=34.13  Aligned_cols=47  Identities=28%  Similarity=0.409  Sum_probs=31.2

Q ss_pred             EEcCCCCC-hHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHHh
Q psy7649           4 YLDGGIRY-GTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKIL   56 (100)
Q Consensus         4 iasGGIr~-g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el~   56 (100)
                      +...||+. +.+.-+|+..|||.+.+||++..+   ..+   .+..+.+++|++
T Consensus       159 i~~pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a---~dP---~~aa~~i~~~ik  206 (206)
T d2czda1         159 ILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNA---PNP---REAAKAIYDEIR  206 (206)
T ss_dssp             EEECCCCSSTTHHHHHHHHTCSEEEECHHHHTS---SSH---HHHHHHHHHHHC
T ss_pred             EECCCccccCCCHHHHHHhCCCEEEEChhhccC---CCH---HHHHHHHHHHhC
Confidence            44556653 446677888999999999999753   344   344445556653

>d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Indole-3-glycerophosphate synthase, IPGS
species: Escherichia coli [TaxId: 562]

Probab=89.08  E-value=0.11  Score=36.98  Aligned_cols=33  Identities=21%  Similarity=0.178  Sum_probs=28.4

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHH
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~a   35 (100)
                      .+++-+||+++.|+.. +.-|+|+|.+|..+|.+
T Consensus       210 ~~VsESGI~~~~d~~~-l~~g~davLiGeslm~~  242 (254)
T d1piia2         210 TVISESGINTYAQVRE-LSHFANGFLIGSALMAH  242 (254)
T ss_dssp             EEEEESCCCCHHHHHH-HTTTCSEEEECHHHHTC
T ss_pred             EEEEcCCCCCHHHHHH-HHcCCCEEEEChHHhCC
Confidence            4788999999999855 67899999999999853

>d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Escherichia coli [TaxId: 562]

Probab=88.06  E-value=0.31  Score=33.34  Aligned_cols=49  Identities=8%  Similarity=0.053  Sum_probs=37.2

Q ss_pred             EEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649           4 YLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV   52 (100)
Q Consensus         4 iasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~   52 (100)
                      +..+.+|+..++..+..+|+|.+-+.-.++..+....  .+++.++.+.|+
T Consensus       162 Il~AS~R~~~~v~~~~~~G~d~iTip~~v~~~l~~~~~t~~~~~~F~~d~~  212 (220)
T d1l6wa_         162 VLAASFKTPRQALDCLLAGCESITLPLDVAQQMISYPAVDAAVAKFEQDWQ  212 (220)
T ss_dssp             EEEBCCSSHHHHHHHHHTTCSEEEECHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             EeehhcCCHHHHHHHHHcCCCEEEcCHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            5568999999999999999999999999998876431  244444444443

>d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Histidine biosynthesis enzymes
domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF
species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]

Probab=87.79  E-value=0.056  Score=39.55  Aligned_cols=34  Identities=29%  Similarity=0.392  Sum_probs=29.7

Q ss_pred             CeEEEcCCCCChHHH-----------HHHHHhCcchHhhhHHHHH
Q psy7649           1 MEVYLDGGIRYGTDV-----------FKAIGLGAKYVFVGRAALW   34 (100)
Q Consensus         1 i~liasGGIr~g~Di-----------~KAlALGAd~v~ig~~~L~   34 (100)
                      +||-+.|||||-.||           .+.+.+|||=|.+++.++.
T Consensus        96 vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~GadKVvI~T~ai~  140 (323)
T d1jvna1          96 VPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGADKVSIGTDAVY  140 (323)
T ss_dssp             SCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCSEEEECHHHHH
T ss_pred             eeEEEecCcccHHHhhhccchhhHHHHHHHHcCCCeEEechHHhh
Confidence            689999999997664           7899999999999998764

>d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Decameric fructose-6-phosphate aldolase/transaldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=87.04  E-value=0.44  Score=32.50  Aligned_cols=48  Identities=23%  Similarity=0.207  Sum_probs=37.2

Q ss_pred             EcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccC--HHHHHHHHHHHH
Q psy7649           5 LDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSG--SNGAARVLQSLV   52 (100)
Q Consensus         5 asGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g--~~gv~~~i~~l~   52 (100)
                      ..+.+|+..++..|...|+|.+-+.-.++..+....  .+++.++.+.|+
T Consensus       163 l~AS~r~~~~v~~a~~~G~d~iTip~~v~~~l~~~~~t~~~v~~F~~D~~  212 (218)
T d1vpxa_         163 IAASIRHPMHVVEAALMGVDIVTMPFAVLEKLFKHPMTDLGIERFMEDWK  212 (218)
T ss_dssp             EEBSCCSHHHHHHHHHHTCSEEEECHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred             eeeccCCHHHHHHHHHcCCCEEEcCHHHHHHHHCCCccHHHHHHHHHHHH
Confidence            447899999999999999999999999999887531  345555544444

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

Probab=86.45  E-value=0.16  Score=35.82  Aligned_cols=28  Identities=18%  Similarity=0.239  Sum_probs=24.4

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhhh
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFVG   29 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~ig   29 (100)
                      .|=+||||||..|+.+-+.+||+..|..
T Consensus       199 gIKasGGIrt~~~a~~~i~~ga~~iG~~  226 (250)
T d1p1xa_         199 GFKPAGGVRTAEDAQKYLAIADELFGAD  226 (250)
T ss_dssp             EEECBSSCCSHHHHHHHHHHHHHHHCTT
T ss_pred             eeEecCCCCCHHHHHHHHHHHHHHhCcc
Confidence            4668999999999999999999977644

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=85.12  E-value=0.67  Score=31.38  Aligned_cols=48  Identities=19%  Similarity=0.374  Sum_probs=34.0

Q ss_pred             CeEEEcCCCCChHHHHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           1 MEVYLDGGIRYGTDVFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         1 i~liasGGIr~g~Di~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      +++.+||||..- -+-+....|||.+.+|+.+..   ...   ..+.+..+++-+
T Consensus       169 ~~I~VDGGIn~~-~i~~l~~aGad~~V~GS~if~---~~d---~~~~i~~lr~~~  216 (220)
T d1h1ya_         169 LDIEVDGGLGPS-TIDVAASAGANCIVAGSSIFG---AAE---PGEVISALRKSV  216 (220)
T ss_dssp             SEEEEESSCSTT-THHHHHHHTCCEEEESHHHHT---SSC---HHHHHHHHHHHH
T ss_pred             ceEEEEecCCHH-HHHHHHHCCCCEEEECHHHHC---CCC---HHHHHHHHHHHH
Confidence            368999999875 677788999999999987542   223   345555555544

>d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Escherichia coli [TaxId: 562]

Probab=84.69  E-value=0.22  Score=33.75  Aligned_cols=33  Identities=24%  Similarity=0.377  Sum_probs=24.1

Q ss_pred             EEEcCCCCChHH----------HHHHHHhCcchHhhhHHHHHH
Q psy7649           3 VYLDGGIRYGTD----------VFKAIGLGAKYVFVGRAALWG   35 (100)
Q Consensus         3 liasGGIr~g~D----------i~KAlALGAd~v~ig~~~L~a   35 (100)
                      ++++.||+...+          .-+|+..|||.+.+||++..+
T Consensus       174 ~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iIVGR~It~a  216 (231)
T d1eixa_         174 KLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQS  216 (231)
T ss_dssp             EEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTS
T ss_pred             ceecCCcccCCCCccCccccCCHHHHHHcCCCEEEECCcccCC
Confidence            678888875321          345667899999999999843

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=83.82  E-value=0.25  Score=34.80  Aligned_cols=27  Identities=19%  Similarity=0.206  Sum_probs=23.3

Q ss_pred             eEEEcCCCCChHHHHHHHHhCcchHhh
Q psy7649           2 EVYLDGGIRYGTDVFKAIGLGAKYVFV   28 (100)
Q Consensus         2 ~liasGGIr~g~Di~KAlALGAd~v~i   28 (100)
                      .|=+||||||..++.+-+.+||+.++.
T Consensus       206 gVKASGGIrt~~~a~~~i~~g~~~lG~  232 (256)
T d2a4aa1         206 GLKVSGGISDLNTASHYILLARRFLSS  232 (256)
T ss_dssp             EEEEESSCCSHHHHHHHHHHHHHHTC-
T ss_pred             eEEecCCCCCHHHHHHHHHHHHHhccc
Confidence            366899999999999999999998654

>d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase)
species: Bacillus subtilis [TaxId: 1423]

Probab=82.53  E-value=0.41  Score=32.52  Aligned_cols=47  Identities=19%  Similarity=0.227  Sum_probs=30.7

Q ss_pred             EEEcCCCCChHH----------HHHHHHhCcchHhhhHHHHHHHhccCHHHHHHHHHHHHHHH
Q psy7649           3 VYLDGGIRYGTD----------VFKAIGLGAKYVFVGRAALWGLAHSGSNGAARVLQSLVHKI   55 (100)
Q Consensus         3 liasGGIr~g~D----------i~KAlALGAd~v~ig~~~L~al~~~g~~gv~~~i~~l~~el   55 (100)
                      ++++.|||-..+          .-+|+..|||.+.+||++..+   ..+.   +..+.+++|+
T Consensus       178 ~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iIVGR~I~~s---~dP~---~aa~~i~~~i  234 (237)
T d1dbta_         178 LTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKA---EDPV---KAYKAVRLEW  234 (237)
T ss_dssp             EEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTS---SCHH---HHHHHHHHHH
T ss_pred             eEeccccccCCCCCCCceeeCCHHHHHHcCCCEEEECCcccCC---CCHH---HHHHHHHHHH
Confidence            467777765322          356778999999999999854   3443   3344445554