Psyllid ID: psy764
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 286 | 2.2.26 [Sep-21-2011] | |||||||
| P31937 | 336 | 3-hydroxyisobutyrate dehy | yes | N/A | 0.965 | 0.821 | 0.474 | 7e-74 | |
| Q5R5E7 | 336 | 3-hydroxyisobutyrate dehy | yes | N/A | 0.965 | 0.821 | 0.474 | 9e-74 | |
| Q99L13 | 335 | 3-hydroxyisobutyrate dehy | yes | N/A | 0.965 | 0.823 | 0.467 | 4e-73 | |
| Q2HJD7 | 336 | 3-hydroxyisobutyrate dehy | yes | N/A | 0.965 | 0.821 | 0.467 | 1e-72 | |
| P29266 | 335 | 3-hydroxyisobutyrate dehy | yes | N/A | 0.954 | 0.814 | 0.461 | 6e-72 | |
| Q54CX6 | 321 | Probable 3-hydroxyisobuty | yes | N/A | 0.944 | 0.841 | 0.488 | 9e-70 | |
| Q9V8M5 | 324 | Probable 3-hydroxyisobuty | yes | N/A | 0.937 | 0.827 | 0.452 | 1e-66 | |
| Q9XTI0 | 299 | Probable 3-hydroxyisobuty | yes | N/A | 0.951 | 0.909 | 0.456 | 1e-65 | |
| Q9SUC0 | 347 | Probable 3-hydroxyisobuty | yes | N/A | 0.944 | 0.778 | 0.433 | 6e-63 | |
| P28811 | 298 | 3-hydroxyisobutyrate dehy | yes | N/A | 0.951 | 0.912 | 0.445 | 2e-58 |
| >sp|P31937|3HIDH_HUMAN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Homo sapiens GN=HIBADH PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 277 bits (708), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 185/276 (67%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ +I+YD DA + G + S + +A A+ II+MLP S + ++AY G++
Sbjct: 58 LMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGAN 117
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG
Sbjct: 118 GILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG 177
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
+ A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNLG++LG++
Sbjct: 178 VEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDP 237
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
KLL+ ++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+D A
Sbjct: 238 KLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTK 297
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
+ L LA IY+ + KG KDFS +++FL+ +
Sbjct: 298 SPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
|
Homo sapiens (taxid: 9606) EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 1 |
| >sp|Q5R5E7|3HIDH_PONAB 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Pongo abelii GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 276 bits (707), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 131/276 (47%), Positives = 185/276 (67%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ +I+YD DA + G + S + +A A+ II+MLP S + ++AY G++
Sbjct: 58 LMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGAN 117
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG
Sbjct: 118 GILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG 177
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
+ A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNLG++LG++
Sbjct: 178 VEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDP 237
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
KLL+ ++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+D A
Sbjct: 238 KLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGATLMAKDLGLAQDSATSTK 297
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
+ L LA IY+ + KG KDFS +++FL+ +
Sbjct: 298 SPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
|
Pongo abelii (taxid: 9601) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q99L13|3HIDH_MOUSE 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Mus musculus GN=Hibadh PE=2 SV=1 | Back alignment and function description |
|---|
Score = 274 bits (701), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 129/276 (46%), Positives = 185/276 (67%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ +I+YD D + + G +A S + +A A+ II+MLP+S + ++ Y G++
Sbjct: 57 LMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGAN 116
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG
Sbjct: 117 GILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG 176
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
+ A+ +L+CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNLG++ G++
Sbjct: 177 VEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDP 236
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
KLL+ ++N SSGRCWSS+ YNPVPGV+ VP+SNNY GGF +L+AKD+ LA+D A
Sbjct: 237 KLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTK 296
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L LA IY+ + KG KDFS ++++L+ +
Sbjct: 297 TPILLGSLAHQIYRMMCSKGYSKKDFSSVFQYLREE 332
|
Mus musculus (taxid: 10090) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q2HJD7|3HIDH_BOVIN 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Bos taurus GN=HIBADH PE=2 SV=1 | Back alignment and function description |
|---|
Score = 273 bits (698), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 129/276 (46%), Positives = 184/276 (66%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ +I+YD DA + G + S + +A A+ II+MLP S + ++AY G++
Sbjct: 58 LMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGAN 117
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG
Sbjct: 118 GILKKVKKGSLLIDSSTIDPMVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG 177
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
+ A+ +L CMG N+V+CG G GQ AK+CNN+LL ++M+G AEAMNLG++LG++
Sbjct: 178 VEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDP 237
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
KLL+ ++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+D A
Sbjct: 238 KLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTK 297
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
+ L A IY+ + KG KDFS +++FL+ +
Sbjct: 298 SPILLGSQAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
|
Bos taurus (taxid: 9913) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P29266|3HIDH_RAT 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Hibadh PE=1 SV=3 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 126/273 (46%), Positives = 185/273 (67%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
G+ +I+YD D + + G +A S + +A A+ II+MLP+S + ++ Y G++GIL
Sbjct: 60 HGYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGIL 119
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
K K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG ++
Sbjct: 120 KKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEN 179
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192
A+ +L CMG N+++CG G+GQ AK+CNNMLL ++M+G AEAMNLG++ G++ KLL
Sbjct: 180 EFAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLL 239
Query: 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQT 252
+ ++N SSGRCWSS+ YNPVPGV+ VP+SNNY GGF +L+AKD+ LA+D A
Sbjct: 240 AKILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPI 299
Query: 253 DLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L +A IY+ + KG KDFS ++++L+ +
Sbjct: 300 LLGSVAHQIYRMMCSKGYSKKDFSSVFQYLREE 332
|
Rattus norvegicus (taxid: 10116) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q54CX6|3HIDH_DICDI Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Dictyostelium discoideum GN=hibA PE=3 SV=1 | Back alignment and function description |
|---|
Score = 263 bits (673), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 132/270 (48%), Positives = 184/270 (68%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
+GH++IV+D + D L ++GA +A S + +A A+ I++MLPAS V + Y G +GI
Sbjct: 44 KGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAHVKNVYCGENGIF 103
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
+ +PG +++DSST+DP + ++++A++ Q T LD PVSGGT A+ TLTFMVGG +
Sbjct: 104 QTVRPGTLLLDSSTIDPATAREVASIAKKHQSTMLDCPVSGGTGGAEAGTLTFMVGGSEQ 163
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192
AK L+CMG+NIVHCGD G GQVAK+CNN++LG++M+ V+EAMNLGVK GM+ K L
Sbjct: 164 DFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLVLGISMIAVSEAMNLGVKQGMDPKKL 223
Query: 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQT 252
+ + NTSS RCW+SE+YNP PGV+ PAS Y GGF +L+ KD+ LA D A
Sbjct: 224 AGIFNTSSARCWTSELYNPCPGVIETSPASRGYTGGFGSALMTKDLGLAVDSAKSIGEPL 283
Query: 253 DLSKLATSIYKRLMDKGCQDKDFSYIYEFL 282
L A +Y L+ KG KDFS +Y+FL
Sbjct: 284 LLGNSAHQLYTLLVAKGDGQKDFSVVYDFL 313
|
Dictyostelium discoideum (taxid: 44689) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9V8M5|3HIDH_DROME Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Drosophila melanogaster GN=CG15093 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 253 bits (645), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 124/274 (45%), Positives = 180/274 (65%), Gaps = 6/274 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYD--GSDGI 71
GH + V+D + A LA +GA + S LA ++F+I+MLP + V +YD +DG+
Sbjct: 51 GHKLHVFDISKPACDGLAAKGATVYAKTSELAKNSDFVITMLPNNAIVDASYDEMTADGV 110
Query: 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDK 131
K I IDSST+ P + ++L K F+DAPVSGG A++ATLTFMVGG +
Sbjct: 111 NKD----TIFIDSSTISPDLVKSLQKKISAKGARFIDAPVSGGVPGAEQATLTFMVGGTE 166
Query: 132 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKL 191
+ K +L+CMG+ I HCG G GQ AKLCNNM+L ++M+GV+EAMNL V+ G++A +
Sbjct: 167 AEYNAVKAVLECMGKKITHCGVYGMGQAAKLCNNMMLAISMIGVSEAMNLAVRQGLDANV 226
Query: 192 LSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQ 251
+++IN+S+GRCW+SE+YNPVPGV + PA+ +Y GGF +L+ KD+ LA +AN +
Sbjct: 227 FAEIINSSTGRCWASEIYNPVPGVCPSAPANRDYAGGFSSALITKDLGLASGVANASNSP 286
Query: 252 TDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L LA +Y+ L DKG +KDFS +Y+ +K +
Sbjct: 287 IPLGSLAHKVYQSLCDKGLGNKDFSVVYDLMKKE 320
|
Drosophila melanogaster (taxid: 7227) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9XTI0|3HIDH_CAEEL Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Caenorhabditis elegans GN=B0250.5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 250 bits (638), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 125/274 (45%), Positives = 180/274 (65%), Gaps = 2/274 (0%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G +IVYD N Q EG +A + +A+ ++ II++LP+S V Y G GI K
Sbjct: 24 GKKLIVYDVNKAVVQEFKAEGCEVAAHPADIAAASKEIITVLPSSPHVKAVYQGEAGIFK 83
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG-GDKS 132
+PG + +DSST+D V ++ A + ++DAP+SGG AQ+ATLTFMVG G+ +
Sbjct: 84 TIQPGTLCMDSSTIDQIVSLEVAQAAALLKAEYIDAPISGGVTGAQQATLTFMVGAGNDA 143
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192
+ ++A+ +L MG+NIV+ G GNG AK+CNNMLLG+ M+ VAE MNLG+ +G++AK L
Sbjct: 144 TFKRAEAVLSLMGKNIVNLGAVGNGTAAKICNNMLLGIQMVAVAETMNLGISMGLDAKAL 203
Query: 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQT 252
+ ++NTSSGRCWSS+ YNPVPGV+ N+P+ Y GGF +L+AKD+ LA++ + A T
Sbjct: 204 AGIVNTSSGRCWSSDTYNPVPGVIENIPSCRGYAGGFGTTLMAKDLSLAQNASTNTQAPT 263
Query: 253 DLSKLATSIYKRL-MDKGCQDKDFSYIYEFLKNK 285
+ LA IY+ L D Q KDF +Y+FLK +
Sbjct: 264 PMGSLAHQIYRILARDPQYQAKDFGVVYQFLKKQ 297
|
Caenorhabditis elegans (taxid: 6239) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|Q9SUC0|3HIDH_ARATH Probable 3-hydroxyisobutyrate dehydrogenase, mitochondrial OS=Arabidopsis thaliana GN=At4g20930 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 241 bits (614), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 123/284 (43%), Positives = 180/284 (63%), Gaps = 14/284 (4%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL- 72
G+ V V+D N D + + G + + +A +E +I+MLP+S V+D Y G++G+L
Sbjct: 60 GYKVTVHDINRDVMKMFTEMGVSSRETPYEVAQDSEVVITMLPSSSHVMDVYTGTNGLLL 119
Query: 73 --KHAKPGVIVIDSSTVDPQVPQTLS------NLAREK----QITFLDAPVSGGTKAAQE 120
+P + IDSST+DPQ + +S NL ++ + LDAPVSGG AA+
Sbjct: 120 GENDIRP-ALFIDSSTIDPQTTRKISLAVSNCNLKEKRDNWEKPVMLDAPVSGGVLAAEA 178
Query: 121 ATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMN 180
TLTFMVGG + + A+PIL+ MGR ++CG SGNG AK+CNN+ + V+M+G +EA+
Sbjct: 179 GTLTFMVGGPEDAYLAARPILQSMGRTSIYCGGSGNGSAAKICNNLAMAVSMLGTSEALA 238
Query: 181 LGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240
LG LG++A L++V+NTSSGRCWSS+ YNPVPGV+ VP+S +YNGGF L+AKD+ L
Sbjct: 239 LGQSLGISASTLTEVLNTSSGRCWSSDAYNPVPGVMKGVPSSRDYNGGFASKLMAKDLNL 298
Query: 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284
A A ++ L A IYK++ ++G + KDFS ++ N
Sbjct: 299 AAASAEEVGHKSPLISKAQEIYKKMCEEGHETKDFSCVFRHFYN 342
|
Arabidopsis thaliana (taxid: 3702) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
| >sp|P28811|MMSB_PSEAE 3-hydroxyisobutyrate dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=mmsB PE=2 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/274 (44%), Positives = 163/274 (59%), Gaps = 2/274 (0%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
GH V V+D A L ++GA A S GAE +ISMLPA Q V Y G DG+L
Sbjct: 24 GHRVNVFDLQPKAVLGLVEQGAQGADSALQCCEGAEVVISMLPAGQHVESLYLGDDGLLA 83
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
++ID ST+ P+ + ++ A K +T LDAPVSGG A+ TL+F+VGG
Sbjct: 84 RVAGKPLLIDCSTIAPETARKVAEAAAAKGLTLLDAPVSGGVGGARAGTLSFIVGGPAEG 143
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
+A+P+L+ MGRNI H GD G GQVAK+CNNMLLG+ M G AEA+ LGVK G++ +LS
Sbjct: 144 FARARPVLENMGRNIFHAGDHGAGQVAKICNNMLLGILMAGTAEALALGVKNGLDPAVLS 203
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+V+ SSG W+ +YNP PGV+ PASN Y GGF++ L+ KD+ LA A A T
Sbjct: 204 EVMKQSSGGNWALNLYNPWPGVMPQAPASNGYAGGFQVRLMNKDLGLALANAQAVQASTP 263
Query: 254 LSKLATSIY--KRLMDKGCQDKDFSYIYEFLKNK 285
L LA +++ D + DFS I + + K
Sbjct: 264 LGALARNLFSLHAQADAEHEGLDFSSIQKLYRGK 297
|
Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) (taxid: 208964) EC: 1 EC: . EC: 1 EC: . EC: 1 EC: . EC: 3 EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 286 | ||||||
| 380023660 | 311 | PREDICTED: 3-hydroxyisobutyrate dehydrog | 0.947 | 0.871 | 0.535 | 4e-82 | |
| 307205358 | 295 | 3-hydroxyisobutyrate dehydrogenase, mito | 0.958 | 0.928 | 0.521 | 2e-80 | |
| 307186775 | 285 | 3-hydroxyisobutyrate dehydrogenase, mito | 0.954 | 0.957 | 0.512 | 2e-78 | |
| 350407062 | 318 | PREDICTED: 3-hydroxyisobutyrate dehydrog | 0.951 | 0.855 | 0.507 | 5e-77 | |
| 340709790 | 318 | PREDICTED: 3-hydroxyisobutyrate dehydrog | 0.951 | 0.855 | 0.503 | 9e-77 | |
| 321471614 | 332 | hypothetical protein DAPPUDRAFT_302347 [ | 0.947 | 0.816 | 0.509 | 3e-76 | |
| 242004397 | 310 | 3-hydroxyisobutyrate dehydrogenase, puta | 0.947 | 0.874 | 0.509 | 5e-76 | |
| 198428837 | 322 | PREDICTED: similar to 3-hydroxyisobutyra | 0.940 | 0.835 | 0.505 | 2e-75 | |
| 383859099 | 316 | PREDICTED: 3-hydroxyisobutyrate dehydrog | 0.954 | 0.863 | 0.494 | 4e-75 | |
| 442748465 | 338 | Hypothetical protein [Ixodes ricinus] | 0.947 | 0.801 | 0.487 | 6e-74 |
| >gi|380023660|ref|XP_003695633.1| PREDICTED: 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 145/271 (53%), Positives = 197/271 (72%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
+G+ +IV+D N A L GA+ A S + +A E ++SMLP++Q VLD Y+ +G+L
Sbjct: 40 KGYKLIVFDVNESAMSNLTDIGADRASSPAEMAKDVEVVVSMLPSNQHVLDVYNLKNGLL 99
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
AK I+IDSST+DP V QTL+ A++ + FLD+PVSGG AA+ TLTFMVGG K
Sbjct: 100 SSAKRNSILIDSSTIDPFVSQTLAKEAKKLNLNFLDSPVSGGINAAKNGTLTFMVGGSKE 159
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192
+ E K +L CMG I+HCGD G GQ AKLCNNMLLG++M+G AEA NLG KLG+++K+L
Sbjct: 160 NFELVKTLLNCMGSRIIHCGDVGMGQAAKLCNNMLLGISMIGTAEAFNLGQKLGLDSKIL 219
Query: 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQT 252
+D+IN+SSG+CWSSE+YNPVPG+L NVP+S NY GGF ++L+AKD+ LA+ +A + A
Sbjct: 220 TDIINSSSGKCWSSELYNPVPGILKNVPSSKNYEGGFGVTLMAKDLGLAQSVATKVEATI 279
Query: 253 DLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
L LA IY+ ++ +G KDFSY+Y+FLK
Sbjct: 280 PLGSLAHQIYRAIIVRGFAKKDFSYVYQFLK 310
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307205358|gb|EFN83706.1| 3-hydroxyisobutyrate dehydrogenase, mitochondrial [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 305 bits (780), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 143/274 (52%), Positives = 195/274 (71%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
+G+ + VYD N A L ++GA+ A S + ++ E I+SMLP++Q VLD Y G G+L
Sbjct: 22 KGYKLSVYDVNKSAITGLVEKGASDASSAAEVSKEVEVIVSMLPSNQHVLDVYTGEHGVL 81
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
AK ++IDSSTVDP + Q+++ A+ + + F+D+PVSGG AA+ TLTFMVGG K+
Sbjct: 82 SAAKENTLLIDSSTVDPSISQSVATEAQRRNLRFIDSPVSGGVNAAKNGTLTFMVGGTKT 141
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192
+ AKP+L+ MG IVHCGD G GQ AKLCNNMLL ++M+G AE NLG KLG++AKLL
Sbjct: 142 DFDAAKPVLEAMGSRIVHCGDVGMGQAAKLCNNMLLAISMIGTAETFNLGQKLGLDAKLL 201
Query: 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQT 252
+D+IN+SSGRCWSS++YNPVPG+L +VP+S NY GGF +L+AKD+ LA+ A R
Sbjct: 202 ADIINSSSGRCWSSDLYNPVPGILPDVPSSKNYEGGFGTTLMAKDLGLAQSAATRTQTPI 261
Query: 253 DLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNKT 286
L LA IY+ + +G +KDFS IY+FLK K+
Sbjct: 262 PLGSLAHQIYRAAIAQGFSNKDFSVIYQFLKGKS 295
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307186775|gb|EFN72210.1| 3-hydroxyisobutyrate dehydrogenase, mitochondrial [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 140/273 (51%), Positives = 196/273 (71%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
+ + + VYD N A L + GAN A +++ ++ E +ISMLP++Q V+D Y G +GIL
Sbjct: 12 KNYKLTVYDLNKSAVSNLVEAGANSASNVAEMSREVEIVISMLPSNQHVVDVYTGENGIL 71
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
AK V++IDSSTVDP V Q++++ A++ + F+D+PVSGG AA++ TLTFMVGG
Sbjct: 72 SAAKKNVLLIDSSTVDPSVSQSIASQAKKDNLRFIDSPVSGGINAAKDGTLTFMVGGSNI 131
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192
+ AK IL+ MG IV+CGD G GQ AKLCNNMLL ++M+G AEA NLG KLG++AK+L
Sbjct: 132 DFDYAKSILEAMGSRIVYCGDIGMGQAAKLCNNMLLAISMIGTAEAFNLGQKLGLDAKVL 191
Query: 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQT 252
++++N+SSG+CWSS++YNPVPG+L NVP+S NY GGF +L+AKD+ LA+ A R A
Sbjct: 192 ANIVNSSSGKCWSSDLYNPVPGILPNVPSSKNYEGGFGTTLMAKDLGLAQSAAIRTQAPI 251
Query: 253 DLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L LA IY+ ++ G +KDFS +Y+FLK K
Sbjct: 252 PLGSLAHQIYRTIIAHGFSNKDFSVVYQFLKGK 284
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350407062|ref|XP_003487971.1| PREDICTED: 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 293 bits (751), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 138/272 (50%), Positives = 194/272 (71%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
GH ++V+D N A L + GA+ A + + E ++SMLP++QDVLD Y+ +G+L
Sbjct: 44 GHKLVVFDVNESAVSNLTEVGADRASDPTEVVKDVEVVVSMLPSNQDVLDVYNIKNGLLS 103
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
AK ++IDSST+DP V Q L+ A + + F+D+PVSGG AA++ TLTFMVGG K +
Sbjct: 104 SAKRDTLLIDSSTIDPFVSQILAKEAEKMSVNFIDSPVSGGINAAKDGTLTFMVGGSKEN 163
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E AKP+LK MG I+HCG+ G GQ AKLCNNMLL ++M+G AEA NLG KLG++ K+L+
Sbjct: 164 FELAKPLLKSMGSKIIHCGNVGMGQAAKLCNNMLLAISMIGTAEAFNLGQKLGLDPKVLA 223
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+++N+SSGRCWSSE+YNPVPG+L NVP+S NY GGF ++L+AKD+ LA+ A + A
Sbjct: 224 NIVNSSSGRCWSSELYNPVPGILDNVPSSKNYEGGFGVTLMAKDLGLAQVAAAKVEASIP 283
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
LA IY+ ++ +G KDFS++Y+FLK +
Sbjct: 284 FGSLAHQIYRAIIAQGFTKKDFSFVYQFLKGQ 315
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340709790|ref|XP_003393484.1| PREDICTED: 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 293 bits (749), Expect = 9e-77, Method: Compositional matrix adjust.
Identities = 137/272 (50%), Positives = 193/272 (70%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
GH ++V+D N A L + GAN A + + E ++SMLP++QDVLD Y+ +G+L
Sbjct: 44 GHKLVVFDVNESAVSKLTEVGANRASDPTEVVKNVEVVVSMLPSNQDVLDVYNIKNGLLS 103
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
A+ ++IDSST+DP V Q L+ A + + F+D+PVSGG AA++ TLTFMVGG K +
Sbjct: 104 AARRDTLLIDSSTIDPFVSQILAKEAEKFNVNFIDSPVSGGINAAKDGTLTFMVGGSKEN 163
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E AKP+LK MG I+HCG+ G GQ AKLCNNMLL ++M+G AEA NLG KLG++ K+L+
Sbjct: 164 FELAKPLLKSMGSKIIHCGNVGMGQAAKLCNNMLLAISMIGTAEAFNLGQKLGLDPKVLA 223
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+++N+SSGRCWSSE+YNPVPG+L NVP+S NY GGF ++L+AKD+ L + A + A
Sbjct: 224 NIVNSSSGRCWSSELYNPVPGILDNVPSSKNYEGGFGVTLMAKDLGLVQAAAAKVEASIP 283
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
LA IY+ ++ +G KDFS++Y+FLK +
Sbjct: 284 FGSLAHQIYRAIIAQGFTKKDFSFVYQFLKGQ 315
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|321471614|gb|EFX82586.1| hypothetical protein DAPPUDRAFT_302347 [Daphnia pulex] | Back alignment and taxonomy information |
|---|
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 138/271 (50%), Positives = 192/271 (70%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
+G+ V V+D +A L GA++ + + +A ++ II+MLP S V +AY G +G+
Sbjct: 56 KGNSVTVFDVYPEAMSKLQDAGASVGHNPAEVAEKSDTIITMLPNSGHVQEAYAGENGVF 115
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
+ AKPG ++IDSST+DP V + ++ LA +K + F+DAPVSGG AA+ TLTFMVGG +
Sbjct: 116 QTAKPGSLLIDSSTIDPSVSKEMAALAEKKGMIFIDAPVSGGVMAAKAGTLTFMVGGPEE 175
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192
A+ IL+ +G+NIV+CG G+GQ AK+CNNMLL + M+G AEAMNLGV+LG++ KLL
Sbjct: 176 QFPNARAILEHVGKNIVYCGPVGSGQAAKICNNMLLAINMVGTAEAMNLGVRLGLDPKLL 235
Query: 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQT 252
S +INTSSGR WSSE+YNPVPGVL NVPASNNY GGF +L+ KD+ LA++ A R +
Sbjct: 236 SSIINTSSGRSWSSEIYNPVPGVLPNVPASNNYEGGFGTALMTKDLGLAQNSATRSNSAI 295
Query: 253 DLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
L LA +Y+ + +G KDFS +Y+FL+
Sbjct: 296 PLGSLAHQLYRLMTVRGYAKKDFSSVYQFLQ 326
|
Source: Daphnia pulex Species: Daphnia pulex Genus: Daphnia Family: Daphniidae Order: Diplostraca Class: Branchiopoda Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242004397|ref|XP_002423077.1| 3-hydroxyisobutyrate dehydrogenase, putative [Pediculus humanus corporis] gi|212506008|gb|EEB10339.1| 3-hydroxyisobutyrate dehydrogenase, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 138/271 (50%), Positives = 189/271 (69%)
Query: 15 HDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74
+ V+VYD + + +GA A S + LAS + +++MLP +Q VLD Y G +G+ +
Sbjct: 39 YPVVVYDVLEEVMEQSKHDGAKTASSPADLASKVDVVLTMLPTNQHVLDCYQGPNGVFEG 98
Query: 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSL 134
AK I+IDSSTVDP V T++ A E++ +F+DAPVSGG A++ TLTFMVGG++S
Sbjct: 99 AKKDTILIDSSTVDPSVSVTINKGATERRTSFVDAPVSGGVIGAKDGTLTFMVGGEESVY 158
Query: 135 EKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSD 194
KPIL+CMG NIV+CG +G+GQ AK+CNNMLLG+TM+GV+EA+NLG LG++ KLL+
Sbjct: 159 RIVKPILECMGSNIVYCGKAGSGQAAKICNNMLLGITMLGVSEALNLGNSLGLDPKLLTS 218
Query: 195 VINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDL 254
+INTS+GRCWSSE YNPVP +L NVP+S +Y GGF L+ KD+ LA+D+A R L
Sbjct: 219 IINTSTGRCWSSEKYNPVPDILPNVPSSKDYEGGFMSKLMCKDLGLAQDIATRLKVSIPL 278
Query: 255 SKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
Y+ + G DKDFSY+Y++LK K
Sbjct: 279 GSTTHQFYRLVNTMGDGDKDFSYVYQYLKGK 309
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|198428837|ref|XP_002130423.1| PREDICTED: similar to 3-hydroxyisobutyrate dehydrogenase, mitochondrial precursor (HIBADH) [Ciona intestinalis] | Back alignment and taxonomy information |
|---|
Score = 288 bits (736), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 136/269 (50%), Positives = 189/269 (70%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
GH V+ +D +++ + + G + S S +A + II+MLP S V + Y GS+GIL+
Sbjct: 49 GHKVVAFDVIEASTKPIVEAGGQIVSSPSEVAKHSTQIITMLPNSSHVQEVYLGSEGILQ 108
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
+ G I+IDSST+DP V Q ++ + K T+LDAPVSGG AAQ ATLTFMVGG+K
Sbjct: 109 SVQAGSILIDSSTIDPAVSQNVAKQSELKSATYLDAPVSGGVGAAQAATLTFMVGGEKED 168
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E A IL +G+N+VHCG G GQ AK+CNNMLL ++M+GV+E+MNLG+KLG+N K+L+
Sbjct: 169 FETASHILNHVGKNVVHCGGVGTGQAAKICNNMLLAISMIGVSESMNLGIKLGLNPKILA 228
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+INTSSGRCWSS+ YNPVPGVL NVP+SNNY GGF +L+ KD+ L++ A+ + T
Sbjct: 229 GIINTSSGRCWSSDTYNPVPGVLPNVPSSNNYQGGFGTALMTKDLGLSQQAASATNSLTP 288
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFL 282
+ A +Y+ L +KG +KDFS +++FL
Sbjct: 289 MGASALQMYRMLCEKGFGEKDFSSVFKFL 317
|
Source: Ciona intestinalis Species: Ciona intestinalis Genus: Ciona Family: Cionidae Order: Enterogona Class: Ascidiacea Phylum: Chordata Superkingdom: Eukaryota |
| >gi|383859099|ref|XP_003705035.1| PREDICTED: 3-hydroxyisobutyrate dehydrogenase, mitochondrial-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 135/273 (49%), Positives = 190/273 (69%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
+G+ ++VYD N A L + GA+ A + + LA + ++SMLP++Q VLD YD +G+L
Sbjct: 43 KGYKLVVYDVNESAMSNLTEAGADKASNTAELAKDVDVVVSMLPSNQHVLDVYDIKNGLL 102
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
AK ++IDSST+DP V QT++ A E F+D PVSGG AA++ TLTFMVGG K
Sbjct: 103 SSAKRDTLLIDSSTIDPFVSQTVAKNAGEVGARFVDCPVSGGVNAAKDGTLTFMVGGSKE 162
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192
+ + A+ LK MG IVHCGD G GQ AKLCNNM+L ++M+G AEA +LG KLG++ K+L
Sbjct: 163 NFQLAESFLKSMGSRIVHCGDVGMGQAAKLCNNMILAISMIGTAEAFHLGQKLGLDPKVL 222
Query: 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQT 252
+D++N+S+GRCWSSE+YNPVPG+L NVP+S NY GGF +L++KD+ L + A +
Sbjct: 223 ADIVNSSTGRCWSSELYNPVPGLLDNVPSSKNYEGGFGAALMSKDLGLVQSAAIKAETAI 282
Query: 253 DLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L LA IY+ ++ G KDFS++Y+FLK +
Sbjct: 283 PLGSLAHQIYRTIVSHGFAKKDFSFVYQFLKGQ 315
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|442748465|gb|JAA66392.1| Hypothetical protein [Ixodes ricinus] | Back alignment and taxonomy information |
|---|
Score = 283 bits (724), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 132/271 (48%), Positives = 188/271 (69%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
+GH ++VYD +A++ LAK GA S + +A + II+MLP+S V + Y G GI+
Sbjct: 63 KGHRLVVYDIFPEATEELAKHGAVPVGSPAEMADQCDRIITMLPSSPHVREVYAGDKGII 122
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
+ G ++IDSST+DP V Q ++ L K TF+DAPVSGG AA+ TLTFMVGG ++
Sbjct: 123 SKVQTGSLLIDSSTIDPSVSQEMAKLVEAKGATFIDAPVSGGVNAAKAGTLTFMVGGKEA 182
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192
+ AK IL CMG+N++HCG G GQ AK+CNNM+L ++M+G AE MNLG++LG++ K+L
Sbjct: 183 EAQAAKEILLCMGKNVIHCGGVGCGQAAKICNNMMLAISMIGNAETMNLGIRLGLDPKVL 242
Query: 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQT 252
++V+N SSG+ W SEVY+PVPGV+ NVP+SN Y GGF +L+ KD+ LA+ A + ++ T
Sbjct: 243 NNVLNVSSGKTWPSEVYSPVPGVMENVPSSNQYEGGFGAALMTKDLGLAQTAATQTSSPT 302
Query: 253 DLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
L LA IY+ L+ G KDFS +Y+ L+
Sbjct: 303 PLGSLAHQIYRVLLSNGLGKKDFSVVYQLLQ 333
|
Source: Ixodes ricinus Species: Ixodes ricinus Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 286 | ||||||
| DICTYBASE|DDB_G0292566 | 321 | hibA "3-hydroxyisobutyrate deh | 0.951 | 0.847 | 0.490 | 1.3e-68 | |
| UNIPROTKB|P31937 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.965 | 0.821 | 0.474 | 9.2e-68 | |
| UNIPROTKB|Q5R5E7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.965 | 0.821 | 0.474 | 9.2e-68 | |
| MGI|MGI:1889802 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.965 | 0.823 | 0.467 | 3.1e-67 | |
| UNIPROTKB|F1PYB6 | 336 | HIBADH "Uncharacterized protei | 0.965 | 0.821 | 0.471 | 4e-67 | |
| UNIPROTKB|Q2HJD7 | 336 | HIBADH "3-hydroxyisobutyrate d | 0.965 | 0.821 | 0.467 | 6.5e-67 | |
| UNIPROTKB|Q5ZLI9 | 333 | HIBADH "Uncharacterized protei | 0.951 | 0.816 | 0.470 | 2.2e-66 | |
| RGD|708399 | 335 | Hibadh "3-hydroxyisobutyrate d | 0.951 | 0.811 | 0.463 | 2.2e-66 | |
| ZFIN|ZDB-GENE-040801-264 | 328 | hibadha "3-hydroxyisobutyrate | 0.951 | 0.829 | 0.455 | 4.1e-65 | |
| ZFIN|ZDB-GENE-040426-1582 | 329 | hibadhb "3-hydroxyisobutyrate | 0.951 | 0.826 | 0.459 | 1.1e-64 |
| DICTYBASE|DDB_G0292566 hibA "3-hydroxyisobutyrate dehydrogenase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 696 (250.1 bits), Expect = 1.3e-68, P = 1.3e-68
Identities = 134/273 (49%), Positives = 186/273 (68%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
+GH++IV+D + D L ++GA +A S + +A A+ I++MLPAS V + Y G +GI
Sbjct: 44 KGHNLIVFDMSKDNMNRLKEKGAKIANSPAEVAKEADVIVTMLPASAHVKNVYCGENGIF 103
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
+ +PG +++DSST+DP + ++++A++ Q T LD PVSGGT A+ TLTFMVGG +
Sbjct: 104 QTVRPGTLLLDSSTIDPATAREVASIAKKHQSTMLDCPVSGGTGGAEAGTLTFMVGGSEQ 163
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192
AK L+CMG+NIVHCGD G GQVAK+CNN++LG++M+ V+EAMNLGVK GM+ K L
Sbjct: 164 DFNTAKTYLECMGKNIVHCGDVGTGQVAKVCNNLVLGISMIAVSEAMNLGVKQGMDPKKL 223
Query: 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQT 252
+ + NTSS RCW+SE+YNP PGV+ PAS Y GGF +L+ KD+ LA D A
Sbjct: 224 AGIFNTSSARCWTSELYNPCPGVIETSPASRGYTGGFGSALMTKDLGLAVDSAKSIGEPL 283
Query: 253 DLSKLATSIYKRLMDKGCQDKDFSYIYEFL-KN 284
L A +Y L+ KG KDFS +Y+FL KN
Sbjct: 284 LLGNSAHQLYTLLVAKGDGQKDFSVVYDFLNKN 316
|
|
| UNIPROTKB|P31937 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 131/276 (47%), Positives = 185/276 (67%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ +I+YD DA + G + S + +A A+ II+MLP S + ++AY G++
Sbjct: 58 LMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGAN 117
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG
Sbjct: 118 GILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG 177
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
+ A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNLG++LG++
Sbjct: 178 VEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDP 237
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
KLL+ ++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+D A
Sbjct: 238 KLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTK 297
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
+ L LA IY+ + KG KDFS +++FL+ +
Sbjct: 298 SPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
|
|
| UNIPROTKB|Q5R5E7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Pongo abelii (taxid:9601)] | Back alignment and assigned GO terms |
|---|
Score = 688 (247.2 bits), Expect = 9.2e-68, P = 9.2e-68
Identities = 131/276 (47%), Positives = 185/276 (67%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ +I+YD DA + G + S + +A A+ II+MLP S + ++AY G++
Sbjct: 58 LMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGAN 117
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG
Sbjct: 118 GILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG 177
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
+ A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNLG++LG++
Sbjct: 178 VEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDP 237
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
KLL+ ++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+D A
Sbjct: 238 KLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGATLMAKDLGLAQDSATSTK 297
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
+ L LA IY+ + KG KDFS +++FL+ +
Sbjct: 298 SPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
|
|
| MGI|MGI:1889802 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 683 (245.5 bits), Expect = 3.1e-67, P = 3.1e-67
Identities = 129/276 (46%), Positives = 185/276 (67%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ +I+YD D + + G +A S + +A A+ II+MLP+S + ++ Y G++
Sbjct: 57 LMKHGYPLILYDVFPDVCKEFKEAGEQVASSPAEVAEKADRIITMLPSSMNAVEVYSGAN 116
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG
Sbjct: 117 GILKKVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG 176
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
+ A+ +L+CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNLG++ G++
Sbjct: 177 VEDEFAAAQELLECMGSNVVYCGAVGTGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDP 236
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
KLL+ ++N SSGRCWSS+ YNPVPGV+ VP+SNNY GGF +L+AKD+ LA+D A
Sbjct: 237 KLLAKILNMSSGRCWSSDTYNPVPGVMHGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTK 296
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L LA IY+ + KG KDFS ++++L+ +
Sbjct: 297 TPILLGSLAHQIYRMMCSKGYSKKDFSSVFQYLREE 332
|
|
| UNIPROTKB|F1PYB6 HIBADH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 682 (245.1 bits), Expect = 4.0e-67, P = 4.0e-67
Identities = 130/276 (47%), Positives = 184/276 (66%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ +I+YD DA + G + S + +A A+ II+MLP S + ++AY G++
Sbjct: 58 LMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGAN 117
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG
Sbjct: 118 GILKKVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG 177
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
+ A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNLG++LG++
Sbjct: 178 VEDEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDP 237
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
KLL+ ++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+D A
Sbjct: 238 KLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGATLMAKDLGLAQDSATSTK 297
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
+ L A IY+ + KG KDFS +++FL+ +
Sbjct: 298 SPILLGSQAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
|
|
| UNIPROTKB|Q2HJD7 HIBADH "3-hydroxyisobutyrate dehydrogenase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
Identities = 129/276 (46%), Positives = 184/276 (66%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ +I+YD DA + G + S + +A A+ II+MLP S + ++AY G++
Sbjct: 58 LMKHGYPLIIYDVFPDACKEFLDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGAN 117
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GILK K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG
Sbjct: 118 GILKKVKKGSLLIDSSTIDPMVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGG 177
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
+ A+ +L CMG N+V+CG G GQ AK+CNN+LL ++M+G AEAMNLG++LG++
Sbjct: 178 VEEEFAAAQELLGCMGSNVVYCGAVGTGQAAKICNNLLLAISMIGTAEAMNLGIRLGLDP 237
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
KLL+ ++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+D A
Sbjct: 238 KLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTK 297
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
+ L A IY+ + KG KDFS +++FL+ +
Sbjct: 298 SPILLGSQAHQIYRMMCAKGYSKKDFSSVFQFLREE 333
|
|
| UNIPROTKB|Q5ZLI9 HIBADH "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 128/272 (47%), Positives = 182/272 (66%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ VI YD +A + GA + S + +A A+ II+MLP+S + ++ Y G++GILK
Sbjct: 59 GYPVIAYDVFPEACKEFQDLGAQVTDSPADVAERADRIITMLPSSPNAIEVYTGANGILK 118
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG +
Sbjct: 119 KVKKGSLLIDSSTIDPSVSKELAKAVEKMGAVFMDAPVSGGVGAARAGNLTFMVGGMEQE 178
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
+ AK +L CMG N+V+CG+ G GQ AK+CNNMLL ++M+G AE MNLG++LG++ KLL+
Sbjct: 179 FDAAKELLICMGSNVVYCGEVGTGQAAKICNNMLLAISMIGTAETMNLGIRLGLDPKLLA 238
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+ A
Sbjct: 239 KILNMSSGRCWSSDTYNPVPGVMEGVPSANNYQGGFGTTLMAKDLGLAQISATNTKTPVP 298
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L A IY+ + KG KDFS +++FL+ +
Sbjct: 299 LGSQAHQIYRMMCAKGYALKDFSAVFQFLREE 330
|
|
| RGD|708399 Hibadh "3-hydroxyisobutyrate dehydrogenase" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
Identities = 126/272 (46%), Positives = 185/272 (68%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ +I+YD D + + G +A S + +A A+ II+MLP+S + ++ Y G++GILK
Sbjct: 61 GYPLILYDVFPDVCKEFKEAGEQVASSPADVAEKADRIITMLPSSMNSIEVYSGANGILK 120
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG ++
Sbjct: 121 KVKKGSLLIDSSTIDPSVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVENE 180
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
A+ +L CMG N+++CG G+GQ AK+CNNMLL ++M+G AEAMNLG++ G++ KLL+
Sbjct: 181 FAAAQELLGCMGSNVLYCGAVGSGQSAKICNNMLLAISMIGTAEAMNLGIRSGLDPKLLA 240
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
++N SSGRCWSS+ YNPVPGV+ VP+SNNY GGF +L+AKD+ LA+D A
Sbjct: 241 KILNMSSGRCWSSDTYNPVPGVMDGVPSSNNYQGGFGTTLMAKDLGLAQDSATSTKTPIL 300
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L +A IY+ + KG KDFS ++++L+ +
Sbjct: 301 LGSVAHQIYRMMCSKGYSKKDFSSVFQYLREE 332
|
|
| ZFIN|ZDB-GENE-040801-264 hibadha "3-hydroxyisobutyrate dehydrogenase a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 124/272 (45%), Positives = 183/272 (67%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ VI D ++ + L GA + S + +A A+ II+MLP+S +V++ Y GS+ IL+
Sbjct: 55 GYPVIATDAFPESCKELQDSGAQILDSPAEVAEKADRIITMLPSSPNVIEVYTGSNSILR 114
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
K G ++IDSST+DP V + ++ A + F+DAPVSGG AA A LTF+VGG +
Sbjct: 115 KVKKGTLLIDSSTIDPAVSKEMAVAAEKMGAVFMDAPVSGGVGAASLAKLTFLVGGVEEE 174
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
A+ +L CMG N+V+CG G+GQ AK+CNNMLL + M+G AE MNLG++LG++ KLL+
Sbjct: 175 YNAAQELLTCMGANVVYCGQVGSGQAAKICNNMLLAIGMLGTAETMNLGIRLGLDPKLLA 234
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ A++ A
Sbjct: 235 KILNMSSGRCWSSDTYNPVPGVMEGVPSANNYQGGFITTLMAKDLGFAQNTATSTRTPIP 294
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L LA +Y+ + +G +KDFS +++FL+ +
Sbjct: 295 LGSLAHQVYRTMCARGYSNKDFSSVFQFLREE 326
|
|
| ZFIN|ZDB-GENE-040426-1582 hibadhb "3-hydroxyisobutyrate dehydrogenase b" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 125/272 (45%), Positives = 181/272 (66%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ VI D ++ + L + GA + S + +A A+ II+MLP++ +V+D Y G +GILK
Sbjct: 55 GYPVIATDVFPESCKELQELGAQILDSPADVADKADRIITMLPSNPNVVDVYTGPNGILK 114
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
K G ++IDSST+DP V + ++ A + F+ APVSGG AA LTFMVGG +
Sbjct: 115 KVKKGSLLIDSSTIDPAVSKEMAVAAEKLGAVFMGAPVSGGVGAATSGKLTFMVGGPEEE 174
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
AK +L CMG N+V+CG G GQ AK+CNNMLL + M+G AE MNLG++LG++ KLL+
Sbjct: 175 FNAAKELLSCMGANVVYCGQVGTGQAAKICNNMLLAIGMIGTAETMNLGIRLGLDPKLLA 234
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+ KD+ LA++ A
Sbjct: 235 KILNMSSGRCWSSDTYNPVPGVMEGVPSANNYQGGFGTTLMTKDLGLAQNSATNTKTPVL 294
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L +A IY+ + +G +KDFS +++FL+ +
Sbjct: 295 LGSVAHQIYRMMCGRGYANKDFSSVFQFLREE 326
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P0ABQ3 | GARR_ECOL6 | 1, ., 1, ., 1, ., 6, 0 | 0.3308 | 0.9160 | 0.8911 | yes | N/A |
| P28811 | MMSB_PSEAE | 1, ., 1, ., 1, ., 3, 1 | 0.4452 | 0.9510 | 0.9127 | yes | N/A |
| Q9V8M5 | 3HIDH_DROME | 1, ., 1, ., 1, ., 3, 1 | 0.4525 | 0.9370 | 0.8271 | yes | N/A |
| Q5R5E7 | 3HIDH_PONAB | 1, ., 1, ., 1, ., 3, 1 | 0.4746 | 0.9650 | 0.8214 | yes | N/A |
| P63935 | MMSB_MYCTU | 1, ., 1, ., 1, ., 3, 1 | 0.3860 | 0.9370 | 0.9115 | yes | N/A |
| P63936 | MMSB_MYCBO | 1, ., 1, ., 1, ., 3, 1 | 0.3860 | 0.9370 | 0.9115 | yes | N/A |
| Q9SUC0 | 3HIDH_ARATH | 1, ., 1, ., 1, ., 3, 1 | 0.4330 | 0.9440 | 0.7780 | yes | N/A |
| Q54CX6 | 3HIDH_DICDI | 1, ., 1, ., 1, ., 3, 1 | 0.4888 | 0.9440 | 0.8411 | yes | N/A |
| P29266 | 3HIDH_RAT | 1, ., 1, ., 1, ., 3, 1 | 0.4615 | 0.9545 | 0.8149 | yes | N/A |
| Q9XTI0 | 3HIDH_CAEEL | 1, ., 1, ., 1, ., 3, 1 | 0.4562 | 0.9510 | 0.9096 | yes | N/A |
| P31937 | 3HIDH_HUMAN | 1, ., 1, ., 1, ., 3, 1 | 0.4746 | 0.9650 | 0.8214 | yes | N/A |
| O34948 | YKWC_BACSU | 1, ., 1, ., -, ., - | 0.3432 | 0.9125 | 0.9062 | yes | N/A |
| Q99L13 | 3HIDH_MOUSE | 1, ., 1, ., 1, ., 3, 1 | 0.4673 | 0.9650 | 0.8238 | yes | N/A |
| Q2HJD7 | 3HIDH_BOVIN | 1, ., 1, ., 1, ., 3, 1 | 0.4673 | 0.9650 | 0.8214 | yes | N/A |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 286 | |||
| TIGR01692 | 288 | TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogen | 1e-108 | |
| COG2084 | 286 | COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase | 8e-91 | |
| PRK11559 | 296 | PRK11559, garR, tartronate semialdehyde reductase; | 8e-54 | |
| pfam03446 | 163 | pfam03446, NAD_binding_2, NAD binding domain of 6- | 6e-53 | |
| TIGR01505 | 291 | TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropiona | 3e-47 | |
| PRK15461 | 296 | PRK15461, PRK15461, NADH-dependent gamma-hydroxybu | 1e-37 | |
| PRK15059 | 292 | PRK15059, PRK15059, tartronate semialdehyde reduct | 1e-25 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 4e-24 | |
| PLN02858 | 1378 | PLN02858, PLN02858, fructose-bisphosphate aldolase | 2e-20 | |
| PRK09599 | 301 | PRK09599, PRK09599, 6-phosphogluconate dehydrogena | 2e-19 | |
| COG1023 | 300 | COG1023, Gnd, Predicted 6-phosphogluconate dehydro | 2e-19 | |
| TIGR00872 | 298 | TIGR00872, gnd_rel, 6-phosphogluconate dehydrogena | 4e-16 | |
| PRK12490 | 299 | PRK12490, PRK12490, 6-phosphogluconate dehydrogena | 1e-15 | |
| PTZ00142 | 470 | PTZ00142, PTZ00142, 6-phosphogluconate dehydrogena | 3e-04 | |
| COG0362 | 473 | COG0362, Gnd, 6-phosphogluconate dehydrogenase [Ca | 0.003 |
| >gnl|CDD|130753 TIGR01692, HIBADH, 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Score = 316 bits (811), Expect = e-108
Identities = 137/270 (50%), Positives = 173/270 (64%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
GH V V+D DA + GA A S + A GA+ +I+MLPA Q V+ Y G +GIL
Sbjct: 19 GHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILP 78
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
G ++ID ST+DP + L+ LA F+DAPVSGG A+ TLTFMVGG
Sbjct: 79 KVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEE 138
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
A+P+L MGRNIVHCGD G GQ AK+CNNMLLG++M+G AEAM LG KLG++ K+L
Sbjct: 139 FAAAEPVLGPMGRNIVHCGDHGAGQAAKICNNMLLGISMIGTAEAMALGEKLGLDPKVLF 198
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
++ NTSSGRCWSS+ YNPVPGV+ PASN Y GGF +L+ KD+ LA+D A A T
Sbjct: 199 EIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGLAQDAAKSAGAPTP 258
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
L LA +Y DKG KDFS + + L+
Sbjct: 259 LGALARQLYSLFDDKGHGGKDFSSVIQLLR 288
|
3-hydroxyisobutyrate dehydrogenase is an enzyme that catalyzes the NAD+-dependent oxidation of 3-hydroxyisobutyrate to methylmalonate semialdehyde of the valine catabolism pathway. In Pseudomonas aeruginosa, 3-hydroxyisobutyrate dehydrogenase (mmsB) is co-induced with methylmalonate-semialdehyde dehydrogenase (mmsA) when grown on medium containing valine as the sole carbon source. The positive transcriptional regulator of this operon (mmsR) is located upstream of these genes and has been identified as a member of the XylS/AraC family of transcriptional regulators. 3-hydroxyisobutyrate dehydrogenase shares high sequence homology to the characterized 3-hydroxyisobutyrate dehydrogenase from rat liver with conservation of proposed NAD+ binding residues at the N-terminus (G-8,10,13,24 and D-31). This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446) [Energy metabolism, Amino acids and amines]. Length = 288 |
| >gnl|CDD|224995 COG2084, MmsB, 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 8e-91
Identities = 104/272 (38%), Positives = 155/272 (56%), Gaps = 8/272 (2%)
Query: 13 QGHDVIVYDKNTDAS-QTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71
GH+V VY++ + + + LA GA +A S + A+ A+ +I+MLP V G +G+
Sbjct: 22 AGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGL 81
Query: 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDK 131
L+ KPG IVID ST+ P+ + L+ K + FLDAPVSGG A TLT MVGGD
Sbjct: 82 LEGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDA 141
Query: 132 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKL 191
+ E+AKP+L+ MG+NIVH G G GQ AKL NN+LL + +AEA+ L K G++ +
Sbjct: 142 EAFERAKPVLEAMGKNIVHVGPVGAGQAAKLANNILLAGNIAALAEALALAEKAGLDPDV 201
Query: 192 LSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQ 251
+ +VI+ + W E Y P + +++ GF + L+ KD+ LA D A A
Sbjct: 202 VLEVISGGAAGSWILENYGPR------MLEG-DFSPGFAVDLMLKDLGLALDAAKELGAP 254
Query: 252 TDLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
L+ LA +Y + G ++DFS + + L+
Sbjct: 255 LPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286
|
Length = 286 |
| >gnl|CDD|183197 PRK11559, garR, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 8e-54
Identities = 88/268 (32%), Positives = 140/268 (52%), Gaps = 7/268 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ ++VYD+N +A + GA A + +A + II+MLP S V + G +GI++
Sbjct: 25 GYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIE 84
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
AKPG +VID S++ P + ++ + K I LDAPVSGG A + TL+ MVGGDK+
Sbjct: 85 GAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAI 144
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
+K ++K M ++VH GD G G V KL N +++ + + ++EA+ L K G+N L+
Sbjct: 145 FDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALVLATKAGVNPDLVY 204
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
I G S+ + P V+ N+ GF+I L KD+ A D ++ A
Sbjct: 205 QAIR--GGLAGSTVLDAKAPMVM-----DRNFKPGFRIDLHIKDLANALDTSHGVGAPLP 257
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEF 281
L+ + + L G D S + +
Sbjct: 258 LTAAVMEMMQALKADGLGTADHSALACY 285
|
Length = 296 |
| >gnl|CDD|217563 pfam03446, NAD_binding_2, NAD binding domain of 6-phosphogluconate dehydrogenase | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 6e-53
Identities = 58/138 (42%), Positives = 81/138 (58%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ V VY++ + + L EGA A S + + A+ +I+M+PA V G DG+L
Sbjct: 23 GYTVTVYNRTPEKVEELVAEGAVGAASPAEFVASADVVITMVPAGAAVDAVILGEDGLLP 82
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
KPG I+ID ST DP + + EK I FLDAPVSGG + A+ TL+ MVGGD+ +
Sbjct: 83 GLKPGDIIIDGSTSDPDDTRRRAKELAEKGIHFLDAPVSGGEEGAEAGTLSIMVGGDEEA 142
Query: 134 LEKAKPILKCMGRNIVHC 151
E+ KPIL+ MG + H
Sbjct: 143 FERVKPILEAMGACVTHY 160
|
The NAD binding domain of 6-phosphogluconate dehydrogenase adopts a Rossmann fold. Length = 163 |
| >gnl|CDD|130569 TIGR01505, tartro_sem_red, 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Score = 159 bits (403), Expect = 3e-47
Identities = 78/263 (29%), Positives = 128/263 (48%), Gaps = 7/263 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ + V + + L GA A + + A+ I +M+P S V + G +GI++
Sbjct: 22 GYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIE 81
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
AKPG ++D S++ P + + +EK I +LDAPVSGG A E TL+ MVGGD++
Sbjct: 82 GAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAV 141
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
++ KP+ + +G+NIV G +G+GQ K+ N +++ + + V+EA+ K G++ +
Sbjct: 142 FDRVKPLFEALGKNIVLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGVDPVRVR 201
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+ G S V V + GF+I L KD+ LA D A A
Sbjct: 202 QALR---GGLAGSTVLE----VKGERVIDRTFKPGFRIDLHQKDLNLALDSAKAVGANLP 254
Query: 254 LSKLATSIYKRLMDKGCQDKDFS 276
+ ++ L G D S
Sbjct: 255 NTATVQELFNTLRANGGGQLDHS 277
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. Length = 291 |
| >gnl|CDD|185358 PRK15461, PRK15461, NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 1e-37
Identities = 84/279 (30%), Positives = 132/279 (47%), Gaps = 20/279 (7%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
QGH + V+D N A L +GA A S + A+GAEF+I+MLP V G +G+
Sbjct: 23 QGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVC 82
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
+ +VID ST+ P L + K + +D PV + A TL + GG
Sbjct: 83 EGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAE 142
Query: 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGV-AEAMNLGVKLGMNAKL 191
+E+A PIL MG +++ G G G KL NN + + + + AEA L LG++ +
Sbjct: 143 QVERATPILMAMGNELINAGGPGMGIRVKLINN-YMSIALNALSAEAAVLCEALGLSFDV 201
Query: 192 LSDVIN-TSSGR-----CWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLA 245
V++ T++G+ W ++V + G LS F I L KD+ +A D+A
Sbjct: 202 ALKVMSGTAAGKGHFTTTWPNKV---LKGDLS---------PAFMIDLAHKDLGIALDVA 249
Query: 246 NRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284
N+ L + +Y + G +D+S I E ++
Sbjct: 250 NQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288
|
Length = 296 |
| >gnl|CDD|185019 PRK15059, PRK15059, tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-25
Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 7/212 (3%)
Query: 30 LAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDP 89
L GA + + ++ I M+P + V + G +G K + G ++D S++ P
Sbjct: 38 LLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKTIVDMSSISP 97
Query: 90 QVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIV 149
+ + E +LDAPVSGG A+E TL+ MVGGD++ E+ KP+ + +G+NI
Sbjct: 98 IETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNIT 157
Query: 150 HCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVY 209
G +G+GQ K+ N +++ + + V+EA+ K G + + + G SS +
Sbjct: 158 LVGGNGDGQTCKVANQIIVALNIEAVSEALLFASKAGADPVRVRQAL---MGGFASSRIL 214
Query: 210 NPVPGVLSNVPASNNYNGGFKISLLAKDMKLA 241
V +N GFKI+L KD+ LA
Sbjct: 215 E----VHGERMIKRTFNPGFKIALHQKDLNLA 242
|
Length = 292 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 4e-24
Identities = 65/208 (31%), Positives = 92/208 (44%), Gaps = 5/208 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
V YD G S + +A + ++ M+ + G G +
Sbjct: 347 NFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVS 406
Query: 74 HAKPGVIVIDSSTVDPQ-VPQTLSNLARE-KQITFLDAPVSGGTKAAQEATLTFMVGGDK 131
G ++ SSTV P V Q L E + I +DAPVSGG K A TLT M G
Sbjct: 407 ALPAGASIVLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTD 466
Query: 132 SSLEKAKPILKCMGRNI-VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAK 190
+L+ A +L + + V G G G K+ N +L GV + AEAM G +LG+N +
Sbjct: 467 EALKSAGSVLSALSEKLYVIKGGCGAGSGVKMVNQLLAGVHIASAAEAMAFGARLGLNTR 526
Query: 191 LLSDVINTSSGRCWSSEVYNPVPGVLSN 218
L D+I+ + G W E N VP +L N
Sbjct: 527 KLFDIISNAGGTSWMFE--NRVPHMLDN 552
|
Length = 1378 |
| >gnl|CDD|215463 PLN02858, PLN02858, fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Score = 91.1 bits (226), Expect = 2e-20
Identities = 60/236 (25%), Positives = 113/236 (47%), Gaps = 12/236 (5%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V ++ +T + + G + S + A A ++ +L V D + G +G K
Sbjct: 27 GFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAK 86
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSN-LAREKQITFL-DAPVSGGTKAAQEATLTFMVGGDK 131
+ G +++ ST+ P Q L L K+ FL DA VS G L + G
Sbjct: 87 GLQKGAVILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRS 146
Query: 132 SSLEKAKPILKCMGRNI-VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAK 190
++ +A+P L M + + G+ G G K+ N +L G+ ++ AEAM LGV+ G++
Sbjct: 147 DAITRAQPFLSAMCQKLYTFEGEIGAGSKVKMVNELLEGIHLVASAEAMALGVRAGIHPW 206
Query: 191 LLSDVINTSSGRCWSSEVY-NPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLA 245
++ D+I+ ++G W ++ N VP +L + + +++L +++ + D+A
Sbjct: 207 IIYDIISNAAGSSW---IFKNHVPLLLKDDYIEGRF-----LNVLVQNLGIVLDMA 254
|
Length = 1378 |
| >gnl|CDD|236582 PRK09599, PRK09599, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 86.0 bits (214), Expect = 2e-19
Identities = 59/185 (31%), Positives = 85/185 (45%), Gaps = 29/185 (15%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFII-SMLPASQ---DVLDAYD 66
GH+V+ YD+N +A + LA+EGA A SL L + A ++ M+PA + +D
Sbjct: 22 GGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATIDE-- 79
Query: 67 GSDGILKHAKPGVIVID---SSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL 123
+ PG IVID S D + L EK I F+D SGG +
Sbjct: 80 ----LAPLLSPGDIVIDGGNSYYKDDIR---RAELLAEKGIHFVDVGTSGGVWGLERG-Y 131
Query: 124 TFMVGGDKSSLEKAKPILKCM----GRNIVHCGDSGNGQVAKLCNNMLLGVT--MM-GVA 176
M+GGDK ++E+ +PI K + +H G G G K+ +N G+ MM A
Sbjct: 132 CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGPVGAGHFVKMVHN---GIEYGMMQAYA 188
Query: 177 EAMNL 181
E L
Sbjct: 189 EGFEL 193
|
Length = 301 |
| >gnl|CDD|223954 COG1023, Gnd, Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.5 bits (212), Expect = 2e-19
Identities = 59/175 (33%), Positives = 83/175 (47%), Gaps = 10/175 (5%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFII-SMLPASQDVLDAYDGSD 69
GHDV+ YD N A + L EGA A SL L + A I+ M+PA D
Sbjct: 22 GGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDDLA 81
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
+L G IVID + + + L EK I FLD SGG A+ M+GG
Sbjct: 82 PLL---SAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERG-YCLMIGG 137
Query: 130 DKSSLEKAKPILK--CMGRN-IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 181
D+ ++E+ +PI K G + ++CG SG+G K+ +N + M +AE L
Sbjct: 138 DEEAVERLEPIFKALAPGEDGYLYCGPSGSGHFVKMVHNGIEYGMMQAIAEGFEL 192
|
Length = 300 |
| >gnl|CDD|233163 TIGR00872, gnd_rel, 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 4e-16
Identities = 46/178 (25%), Positives = 74/178 (41%), Gaps = 19/178 (10%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSL---STLASGAEFIISMLPASQDVLDAYDGSDG 70
GHD + YD + DA + + ++ +L S S + M+P D
Sbjct: 23 GHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG--------IVDA 74
Query: 71 ILKHAKP----GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFM 126
+L+ P G IVID + L +EK I LD SGG E FM
Sbjct: 75 VLEELAPTLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGR-ERGYCFM 133
Query: 127 VGGDKSSLEKAKPILKCMG---RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNL 181
+GGD + +A+P+ + + ++CG G+G K+ +N + M +AE +
Sbjct: 134 IGGDGEAFARAEPLFADVAPEEQGYLYCGPCGSGHFVKMVHNGIEYGMMAAIAEGFEI 191
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle [Energy metabolism, Pentose phosphate pathway]. Length = 298 |
| >gnl|CDD|237116 PRK12490, PRK12490, 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 1e-15
Identities = 52/181 (28%), Positives = 75/181 (41%), Gaps = 16/181 (8%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS---GAEFIISMLPASQDVLDAYD 66
L+ GH+V+ YD N +A K G SL L S I M+PA +
Sbjct: 19 LREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK 78
Query: 67 GSDGILKHAKPGVIVID---SSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL 123
+L PG IV+D S D + E+ I ++D SGG +
Sbjct: 79 DLYPLL---SPGDIVVDGGNSRYKDDLRR---AEELAERGIHYVDCGTSGGVWGLRNG-Y 131
Query: 124 TFMVGGDKSSLEKAKPILKCM---GRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMN 180
MVGGDK ++ +P+ K + G VH G G+G K+ +N + M AE +
Sbjct: 132 CLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVGSGHFLKMVHNGIEYGMMQAYAEGLE 191
Query: 181 L 181
L
Sbjct: 192 L 192
|
Length = 299 |
| >gnl|CDD|240287 PTZ00142, PTZ00142, 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 3e-04
Identities = 49/217 (22%), Positives = 92/217 (42%), Gaps = 25/217 (11%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--------MLPASQDV 61
+ +G + VY++ + ++ K+ + + E + S +L + +
Sbjct: 20 IASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEA 79
Query: 62 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 121
+D D +L + G I+ID + EK I +L VSGG + A+
Sbjct: 80 VDET--IDNLLPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYG 137
Query: 122 TLTFMVGGDKSSLEKAKPIL-KCMGRN-----IVHCGDSGNGQVAKLCNNMLLGVTMMGV 175
+ M GG+K + + K IL KC + + + G +G K+ +N + M +
Sbjct: 138 P-SLMPGGNKEAYDHVKDILEKCSAKVGDSPCVTYVGPGSSGHYVKMVHNGIEYGDMQLI 196
Query: 176 AEAMNLGVK--LGMNAKLLSDVINTSSGRCWSSEVYN 210
+E+ L +K LGM+ + LS+V N W+ + N
Sbjct: 197 SESYKL-MKHILGMSNEELSEVFNK-----WNEGILN 227
|
Length = 470 |
| >gnl|CDD|223439 COG0362, Gnd, 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.003
Identities = 41/139 (29%), Positives = 61/139 (43%), Gaps = 18/139 (12%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANM-----ALSLSTLASGAE---FIISMLPASQDVLDAY 65
G+ V VY++ T+ + E A A S+ + E I+ M+ A V DA
Sbjct: 26 GYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPV-DAV 84
Query: 66 DGSDGILKHAKPGVIVID---SSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEAT 122
+ +L + G I+ID S D + L+ EK I F+ VSGG + A+
Sbjct: 85 --IEQLLPLLEKGDIIIDGGNSHYKDTI--RRNKELS-EKGILFVGMGVSGGEEGARHGP 139
Query: 123 LTFMVGGDKSSLEKAKPIL 141
+ M GG K + E PIL
Sbjct: 140 -SIMPGGQKEAYELVAPIL 157
|
Length = 473 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 286 | |||
| COG2084 | 286 | MmsB 3-hydroxyisobutyrate dehydrogenase and relate | 100.0 | |
| KOG0409|consensus | 327 | 100.0 | ||
| TIGR01692 | 288 | HIBADH 3-hydroxyisobutyrate dehydrogenase. This en | 100.0 | |
| PRK15059 | 292 | tartronate semialdehyde reductase; Provisional | 100.0 | |
| PRK15461 | 296 | NADH-dependent gamma-hydroxybutyrate dehydrogenase | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| TIGR01505 | 291 | tartro_sem_red 2-hydroxy-3-oxopropionate reductase | 100.0 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 100.0 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 100.0 | |
| PLN02350 | 493 | phosphogluconate dehydrogenase (decarboxylating) | 100.0 | |
| PRK12490 | 299 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK09599 | 301 | 6-phosphogluconate dehydrogenase-like protein; Rev | 100.0 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 100.0 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 100.0 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 100.0 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 100.0 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 100.0 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 100.0 | |
| COG1023 | 300 | Gnd Predicted 6-phosphogluconate dehydrogenase [Ca | 99.97 | |
| PRK14618 | 328 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.97 | |
| PRK15182 | 425 | Vi polysaccharide biosynthesis protein TviB; Provi | 99.97 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 99.97 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 99.96 | |
| PRK00094 | 325 | gpsA NAD(P)H-dependent glycerol-3-phosphate dehydr | 99.96 | |
| PRK14619 | 308 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.95 | |
| PRK06129 | 308 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.94 | |
| PRK12557 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 99.94 | |
| COG0362 | 473 | Gnd 6-phosphogluconate dehydrogenase [Carbohydrate | 99.93 | |
| PF14833 | 122 | NAD_binding_11: NAD-binding of NADP-dependent 3-hy | 99.92 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 99.91 | |
| COG0240 | 329 | GpsA Glycerol-3-phosphate dehydrogenase [Energy pr | 99.9 | |
| PLN02688 | 266 | pyrroline-5-carboxylate reductase | 99.89 | |
| COG0677 | 436 | WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenas | 99.89 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 99.89 | |
| KOG2653|consensus | 487 | 99.89 | ||
| PRK07679 | 279 | pyrroline-5-carboxylate reductase; Reviewed | 99.88 | |
| PRK07531 | 495 | bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioe | 99.85 | |
| PRK08229 | 341 | 2-dehydropantoate 2-reductase; Provisional | 99.83 | |
| PTZ00345 | 365 | glycerol-3-phosphate dehydrogenase; Provisional | 99.81 | |
| PRK12439 | 341 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.81 | |
| TIGR03376 | 342 | glycerol3P_DH glycerol-3-phosphate dehydrogenase ( | 99.8 | |
| PRK08507 | 275 | prephenate dehydrogenase; Validated | 99.79 | |
| TIGR01724 | 341 | hmd_rel H2-forming N(5),N(10)-methenyltetrahydrome | 99.79 | |
| PRK08268 | 507 | 3-hydroxy-acyl-CoA dehydrogenase; Validated | 99.77 | |
| PRK12491 | 272 | pyrroline-5-carboxylate reductase; Reviewed | 99.77 | |
| PRK11199 | 374 | tyrA bifunctional chorismate mutase/prephenate deh | 99.77 | |
| PRK09260 | 288 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.76 | |
| PRK08655 | 437 | prephenate dehydrogenase; Provisional | 99.75 | |
| TIGR02279 | 503 | PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase Pa | 99.75 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 99.73 | |
| PRK06476 | 258 | pyrroline-5-carboxylate reductase; Reviewed | 99.72 | |
| PRK07680 | 273 | late competence protein ComER; Validated | 99.72 | |
| PRK14620 | 326 | NAD(P)H-dependent glycerol-3-phosphate dehydrogena | 99.72 | |
| COG0345 | 266 | ProC Pyrroline-5-carboxylate reductase [Amino acid | 99.71 | |
| PRK08269 | 314 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.71 | |
| PRK11880 | 267 | pyrroline-5-carboxylate reductase; Reviewed | 99.69 | |
| PRK06130 | 311 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.65 | |
| PRK06545 | 359 | prephenate dehydrogenase; Validated | 99.64 | |
| PLN02545 | 295 | 3-hydroxybutyryl-CoA dehydrogenase | 99.62 | |
| TIGR00112 | 245 | proC pyrroline-5-carboxylate reductase. This enzym | 99.61 | |
| PTZ00431 | 260 | pyrroline carboxylate reductase; Provisional | 99.59 | |
| PRK07530 | 292 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.59 | |
| PRK07819 | 286 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.58 | |
| PRK07502 | 307 | cyclohexadienyl dehydrogenase; Validated | 99.58 | |
| PRK06928 | 277 | pyrroline-5-carboxylate reductase; Reviewed | 99.56 | |
| PRK06035 | 291 | 3-hydroxyacyl-CoA dehydrogenase; Validated | 99.54 | |
| PRK07634 | 245 | pyrroline-5-carboxylate reductase; Reviewed | 99.48 | |
| PRK12921 | 305 | 2-dehydropantoate 2-reductase; Provisional | 99.48 | |
| PF02153 | 258 | PDH: Prephenate dehydrogenase; InterPro: IPR003099 | 99.46 | |
| COG0287 | 279 | TyrA Prephenate dehydrogenase [Amino acid transpor | 99.45 | |
| PRK08293 | 287 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.44 | |
| PRK07066 | 321 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.43 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.42 | |
| PF03721 | 185 | UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogen | 99.39 | |
| PRK14806 | 735 | bifunctional cyclohexadienyl dehydrogenase/ 3-phos | 99.37 | |
| PLN02256 | 304 | arogenate dehydrogenase | 99.36 | |
| TIGR01915 | 219 | npdG NADPH-dependent F420 reductase. This model re | 99.36 | |
| PRK06522 | 304 | 2-dehydropantoate 2-reductase; Reviewed | 99.34 | |
| PRK05808 | 282 | 3-hydroxybutyryl-CoA dehydrogenase; Validated | 99.31 | |
| KOG2666|consensus | 481 | 99.3 | ||
| PF01210 | 157 | NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate | 99.29 | |
| PRK05479 | 330 | ketol-acid reductoisomerase; Provisional | 99.27 | |
| COG2085 | 211 | Predicted dinucleotide-binding enzymes [General fu | 99.26 | |
| PRK08818 | 370 | prephenate dehydrogenase; Provisional | 99.23 | |
| PLN02712 | 667 | arogenate dehydrogenase | 99.21 | |
| TIGR00745 | 293 | apbA_panE 2-dehydropantoate 2-reductase. This mode | 99.18 | |
| PF03807 | 96 | F420_oxidored: NADP oxidoreductase coenzyme F420-d | 99.14 | |
| TIGR00465 | 314 | ilvC ketol-acid reductoisomerase. This is the seco | 99.11 | |
| PRK06249 | 313 | 2-dehydropantoate 2-reductase; Provisional | 99.07 | |
| PF10727 | 127 | Rossmann-like: Rossmann-like domain; InterPro: IPR | 99.07 | |
| cd01065 | 155 | NAD_bind_Shikimate_DH NAD(P) binding domain of Shi | 99.0 | |
| KOG3124|consensus | 267 | 98.93 | ||
| PF00984 | 96 | UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenas | 98.93 | |
| PRK07574 | 385 | formate dehydrogenase; Provisional | 98.87 | |
| COG4007 | 340 | Predicted dehydrogenase related to H2-forming N5,N | 98.87 | |
| PLN03139 | 386 | formate dehydrogenase; Provisional | 98.82 | |
| PRK05708 | 305 | 2-dehydropantoate 2-reductase; Provisional | 98.81 | |
| COG1893 | 307 | ApbA Ketopantoate reductase [Coenzyme metabolism] | 98.8 | |
| PF02737 | 180 | 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD bind | 98.74 | |
| PRK06436 | 303 | glycerate dehydrogenase; Provisional | 98.72 | |
| PRK13243 | 333 | glyoxylate reductase; Reviewed | 98.72 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 98.7 | |
| PRK13403 | 335 | ketol-acid reductoisomerase; Provisional | 98.66 | |
| PRK08605 | 332 | D-lactate dehydrogenase; Validated | 98.62 | |
| PRK11730 | 715 | fadB multifunctional fatty acid oxidation complex | 98.61 | |
| COG1250 | 307 | FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabo | 98.59 | |
| PRK14194 | 301 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.56 | |
| TIGR02437 | 714 | FadB fatty oxidation complex, alpha subunit FadB. | 98.54 | |
| PRK11154 | 708 | fadJ multifunctional fatty acid oxidation complex | 98.54 | |
| TIGR02440 | 699 | FadJ fatty oxidation complex, alpha subunit FadJ. | 98.53 | |
| TIGR01327 | 525 | PGDH D-3-phosphoglycerate dehydrogenase. This mode | 98.53 | |
| PRK15469 | 312 | ghrA bifunctional glyoxylate/hydroxypyruvate reduc | 98.53 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 98.51 | |
| TIGR02441 | 737 | fa_ox_alpha_mit fatty acid oxidation complex, alph | 98.5 | |
| PRK13581 | 526 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.47 | |
| PRK14188 | 296 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.45 | |
| PRK06141 | 314 | ornithine cyclodeaminase; Validated | 98.42 | |
| PRK06444 | 197 | prephenate dehydrogenase; Provisional | 98.39 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 98.38 | |
| KOG2711|consensus | 372 | 98.36 | ||
| KOG2380|consensus | 480 | 98.34 | ||
| TIGR00507 | 270 | aroE shikimate 5-dehydrogenase. This model finds p | 98.33 | |
| PF07991 | 165 | IlvN: Acetohydroxy acid isomeroreductase, catalyti | 98.25 | |
| PLN02928 | 347 | oxidoreductase family protein | 98.25 | |
| PRK00257 | 381 | erythronate-4-phosphate dehydrogenase; Validated | 98.2 | |
| PRK13302 | 271 | putative L-aspartate dehydrogenase; Provisional | 98.19 | |
| cd01075 | 200 | NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l | 98.19 | |
| COG0111 | 324 | SerA Phosphoglycerate dehydrogenase and related de | 98.17 | |
| COG1052 | 324 | LdhA Lactate dehydrogenase and related dehydrogena | 98.15 | |
| PRK11790 | 409 | D-3-phosphoglycerate dehydrogenase; Provisional | 98.14 | |
| PRK14179 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 98.11 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 98.1 | |
| KOG2304|consensus | 298 | 98.05 | ||
| PRK15409 | 323 | bifunctional glyoxylate/hydroxypyruvate reductase | 98.01 | |
| PRK13304 | 265 | L-aspartate dehydrogenase; Reviewed | 98.0 | |
| KOG2305|consensus | 313 | 97.98 | ||
| PRK08410 | 311 | 2-hydroxyacid dehydrogenase; Provisional | 97.98 | |
| PRK06487 | 317 | glycerate dehydrogenase; Provisional | 97.89 | |
| PRK15438 | 378 | erythronate-4-phosphate dehydrogenase PdxB; Provis | 97.85 | |
| PRK06932 | 314 | glycerate dehydrogenase; Provisional | 97.84 | |
| PLN02306 | 386 | hydroxypyruvate reductase | 97.78 | |
| PRK00961 | 342 | H(2)-dependent methylenetetrahydromethanopterin de | 97.76 | |
| COG5495 | 289 | Uncharacterized conserved protein [Function unknow | 97.75 | |
| KOG0069|consensus | 336 | 97.74 | ||
| TIGR01723 | 340 | hmd_TIGR 5,10-methenyltetrahydromethanopterin hydr | 97.73 | |
| PF02558 | 151 | ApbA: Ketopantoate reductase PanE/ApbA; InterPro: | 97.7 | |
| smart00859 | 122 | Semialdhyde_dh Semialdehyde dehydrogenase, NAD bin | 97.62 | |
| TIGR02371 | 325 | ala_DH_arch alanine dehydrogenase, Archaeoglobus f | 97.58 | |
| PRK09310 | 477 | aroDE bifunctional 3-dehydroquinate dehydratase/sh | 97.52 | |
| PRK11861 | 673 | bifunctional prephenate dehydrogenase/3-phosphoshi | 97.46 | |
| PF00670 | 162 | AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase | 97.45 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 97.44 | |
| COG1748 | 389 | LYS9 Saccharopine dehydrogenase and related protei | 97.43 | |
| cd05213 | 311 | NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain | 97.42 | |
| COG2423 | 330 | Predicted ornithine cyclodeaminase, mu-crystallin | 97.42 | |
| PF03720 | 106 | UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen | 97.42 | |
| PF01408 | 120 | GFO_IDH_MocA: Oxidoreductase family, NAD-binding R | 97.35 | |
| PF00393 | 291 | 6PGD: 6-phosphogluconate dehydrogenase, C-terminal | 97.33 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 97.31 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 97.31 | |
| PRK06407 | 301 | ornithine cyclodeaminase; Provisional | 97.26 | |
| PRK06823 | 315 | ornithine cyclodeaminase; Validated | 97.14 | |
| PLN02494 | 477 | adenosylhomocysteinase | 97.13 | |
| PF01488 | 135 | Shikimate_DH: Shikimate / quinate 5-dehydrogenase; | 97.12 | |
| PRK07340 | 304 | ornithine cyclodeaminase; Validated | 97.08 | |
| cd01078 | 194 | NAD_bind_H4MPT_DH NADP binding domain of methylene | 97.08 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 97.07 | |
| PRK00258 | 278 | aroE shikimate 5-dehydrogenase; Reviewed | 97.03 | |
| PRK08618 | 325 | ornithine cyclodeaminase; Validated | 96.98 | |
| TIGR03855 | 229 | NAD_NadX aspartate dehydrogenase. Members of this | 96.96 | |
| TIGR01761 | 343 | thiaz-red thiazolinyl imide reductase. This reduct | 96.95 | |
| PF07479 | 149 | NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate | 96.91 | |
| TIGR02992 | 326 | ectoine_eutC ectoine utilization protein EutC. Mem | 96.89 | |
| PF02423 | 313 | OCD_Mu_crystall: Ornithine cyclodeaminase/mu-cryst | 96.86 | |
| cd05212 | 140 | NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding dom | 96.86 | |
| COG0059 | 338 | IlvC Ketol-acid reductoisomerase [Amino acid trans | 96.83 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 96.82 | |
| PLN00203 | 519 | glutamyl-tRNA reductase | 96.8 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 96.8 | |
| PRK06046 | 326 | alanine dehydrogenase; Validated | 96.79 | |
| cd01080 | 168 | NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of | 96.77 | |
| PF13380 | 116 | CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5 | 96.76 | |
| PRK12549 | 284 | shikimate 5-dehydrogenase; Reviewed | 96.75 | |
| PRK05225 | 487 | ketol-acid reductoisomerase; Validated | 96.75 | |
| PRK00045 | 423 | hemA glutamyl-tRNA reductase; Reviewed | 96.72 | |
| PF02882 | 160 | THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cycl | 96.68 | |
| PRK10669 | 558 | putative cation:proton antiport protein; Provision | 96.55 | |
| PRK14189 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.51 | |
| PRK07589 | 346 | ornithine cyclodeaminase; Validated | 96.51 | |
| PRK00048 | 257 | dihydrodipicolinate reductase; Provisional | 96.49 | |
| PRK08291 | 330 | ectoine utilization protein EutC; Validated | 96.47 | |
| PRK14175 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.44 | |
| PRK06199 | 379 | ornithine cyclodeaminase; Validated | 96.41 | |
| COG1712 | 255 | Predicted dinucleotide-utilizing enzyme [General f | 96.35 | |
| PRK03659 | 601 | glutathione-regulated potassium-efflux system prot | 96.31 | |
| PF03435 | 386 | Saccharop_dh: Saccharopine dehydrogenase ; InterPr | 96.3 | |
| cd01079 | 197 | NAD_bind_m-THF_DH NAD binding domain of methylene- | 96.3 | |
| TIGR01035 | 417 | hemA glutamyl-tRNA reductase. This enzyme, togethe | 96.25 | |
| PF01113 | 124 | DapB_N: Dihydrodipicolinate reductase, N-terminus; | 96.21 | |
| PF02254 | 116 | TrkA_N: TrkA-N domain; InterPro: IPR003148 The reg | 96.21 | |
| PRK03562 | 621 | glutathione-regulated potassium-efflux system prot | 96.21 | |
| PF05222 | 136 | AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal | 96.2 | |
| PRK10792 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 96.2 | |
| PRK08306 | 296 | dipicolinate synthase subunit A; Reviewed | 96.18 | |
| COG0673 | 342 | MviM Predicted dehydrogenases and related proteins | 96.17 | |
| KOG3007|consensus | 333 | 96.05 | ||
| COG0373 | 414 | HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | 96.05 | |
| TIGR00873 | 467 | gnd 6-phosphogluconate dehydrogenase, decarboxylat | 96.03 | |
| TIGR01763 | 305 | MalateDH_bact malate dehydrogenase, NAD-dependent. | 95.98 | |
| PLN02516 | 299 | methylenetetrahydrofolate dehydrogenase (NADP+) | 95.95 | |
| PF13460 | 183 | NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X | 95.88 | |
| PRK14177 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.88 | |
| PRK14170 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.88 | |
| PRK14186 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.87 | |
| PRK14173 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.86 | |
| PRK14166 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.86 | |
| COG4074 | 343 | Mth H2-forming N5,N10-methylenetetrahydromethanopt | 95.86 | |
| PRK13940 | 414 | glutamyl-tRNA reductase; Provisional | 95.8 | |
| PRK14172 | 278 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.77 | |
| PRK09287 | 459 | 6-phosphogluconate dehydrogenase; Validated | 95.76 | |
| TIGR01019 | 286 | sucCoAalpha succinyl-CoA synthetase, alpha subunit | 95.74 | |
| PRK14190 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.72 | |
| PRK14193 | 284 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.71 | |
| PRK14169 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.7 | |
| PRK05678 | 291 | succinyl-CoA synthetase subunit alpha; Validated | 95.69 | |
| PRK14187 | 294 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.67 | |
| PRK14180 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.64 | |
| TIGR01921 | 324 | DAP-DH diaminopimelate dehydrogenase. This model r | 95.64 | |
| PRK14178 | 279 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.6 | |
| TIGR01809 | 282 | Shik-DH-AROM shikimate-5-dehydrogenase, fungal ARO | 95.56 | |
| PRK14176 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.54 | |
| PLN02819 | 1042 | lysine-ketoglutarate reductase/saccharopine dehydr | 95.53 | |
| PRK14182 | 282 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.51 | |
| TIGR00036 | 266 | dapB dihydrodipicolinate reductase. | 95.48 | |
| PLN02897 | 345 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.48 | |
| PRK14171 | 288 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.46 | |
| PRK14183 | 281 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.45 | |
| PRK14191 | 285 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.43 | |
| KOG2741|consensus | 351 | 95.37 | ||
| PLN02616 | 364 | tetrahydrofolate dehydrogenase/cyclohydrolase, put | 95.36 | |
| COG0569 | 225 | TrkA K+ transport systems, NAD-binding component [ | 95.31 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 95.28 | |
| PF01118 | 121 | Semialdhyde_dh: Semialdehyde dehydrogenase, NAD bi | 95.27 | |
| cd05297 | 423 | GH4_alpha_glucosidase_galactosidase Glycoside Hydr | 95.22 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 95.19 | |
| cd05191 | 86 | NAD_bind_amino_acid_DH NAD(P) binding domain of am | 95.16 | |
| PRK14181 | 287 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.11 | |
| KOG0068|consensus | 406 | 95.09 | ||
| PRK14168 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 95.06 | |
| TIGR02717 | 447 | AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP | 94.95 | |
| PRK12548 | 289 | shikimate 5-dehydrogenase; Provisional | 94.93 | |
| PRK06223 | 307 | malate dehydrogenase; Reviewed | 94.93 | |
| PRK13303 | 265 | L-aspartate dehydrogenase; Provisional | 94.84 | |
| cd05311 | 226 | NAD_bind_2_malic_enz NAD(P) binding domain of mali | 94.84 | |
| cd00650 | 263 | LDH_MDH_like NAD-dependent, lactate dehydrogenase- | 94.77 | |
| PRK14185 | 293 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.76 | |
| PF10728 | 132 | DUF2520: Domain of unknown function (DUF2520); Int | 94.76 | |
| cd05291 | 306 | HicDH_like L-2-hydroxyisocapronate dehydrogenases | 94.71 | |
| COG0169 | 283 | AroE Shikimate 5-dehydrogenase [Amino acid transpo | 94.66 | |
| PLN02353 | 473 | probable UDP-glucose 6-dehydrogenase | 94.63 | |
| PF03447 | 117 | NAD_binding_3: Homoserine dehydrogenase, NAD bindi | 94.59 | |
| PRK14184 | 286 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.58 | |
| cd01339 | 300 | LDH-like_MDH L-lactate dehydrogenase-like malate d | 94.57 | |
| CHL00194 | 317 | ycf39 Ycf39; Provisional | 94.48 | |
| PRK14192 | 283 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.43 | |
| COG0190 | 283 | FolD 5,10-methylene-tetrahydrofolate dehydrogenase | 94.4 | |
| PRK13301 | 267 | putative L-aspartate dehydrogenase; Provisional | 94.28 | |
| PLN03209 | 576 | translocon at the inner envelope of chloroplast su | 94.27 | |
| TIGR01850 | 346 | argC N-acetyl-gamma-glutamyl-phosphate reductase, | 94.26 | |
| COG1004 | 414 | Ugd Predicted UDP-glucose 6-dehydrogenase [Cell en | 94.11 | |
| COG1090 | 297 | Predicted nucleoside-diphosphate sugar epimerase [ | 94.05 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 94.03 | |
| PTZ00142 | 470 | 6-phosphogluconate dehydrogenase; Provisional | 94.03 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 94.02 | |
| PRK14167 | 297 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 94.01 | |
| cd05292 | 308 | LDH_2 A subgroup of L-lactate dehydrogenases. L-la | 93.98 | |
| TIGR02853 | 287 | spore_dpaA dipicolinic acid synthetase, A subunit. | 93.95 | |
| PRK14174 | 295 | bifunctional 5,10-methylene-tetrahydrofolate dehyd | 93.89 | |
| PF01262 | 168 | AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal | 93.81 | |
| cd00300 | 300 | LDH_like L-lactate dehydrogenase-like enzymes. Mem | 93.81 | |
| PF05368 | 233 | NmrA: NmrA-like family; InterPro: IPR008030 NmrA i | 93.76 | |
| PRK14982 | 340 | acyl-ACP reductase; Provisional | 93.75 | |
| PRK09496 | 453 | trkA potassium transporter peripheral membrane com | 93.73 | |
| PRK12550 | 272 | shikimate 5-dehydrogenase; Reviewed | 93.68 | |
| PRK10206 | 344 | putative oxidoreductase; Provisional | 93.57 | |
| PTZ00117 | 319 | malate dehydrogenase; Provisional | 93.57 | |
| PRK00436 | 343 | argC N-acetyl-gamma-glutamyl-phosphate reductase; | 93.53 | |
| cd05211 | 217 | NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of | 93.03 | |
| PRK06718 | 202 | precorrin-2 dehydrogenase; Reviewed | 93.01 | |
| KOG1502|consensus | 327 | 92.99 | ||
| cd05294 | 309 | LDH-like_MDH_nadp A lactate dehydrogenases-like st | 92.96 | |
| TIGR01777 | 292 | yfcH conserved hypothetical protein TIGR01777. Thi | 92.9 | |
| COG0300 | 265 | DltE Short-chain dehydrogenases of various substra | 92.88 | |
| KOG1200|consensus | 256 | 92.72 | ||
| COG0499 | 420 | SAM1 S-adenosylhomocysteine hydrolase [Coenzyme me | 92.69 | |
| PRK06182 | 273 | short chain dehydrogenase; Validated | 92.62 | |
| TIGR03649 | 285 | ergot_EASG ergot alkaloid biosynthesis protein, AF | 92.5 | |
| COG4221 | 246 | Short-chain alcohol dehydrogenase of unknown speci | 92.43 | |
| PRK14027 | 283 | quinate/shikimate dehydrogenase; Provisional | 92.37 | |
| PRK01710 | 458 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 92.3 | |
| PRK12749 | 288 | quinate/shikimate dehydrogenase; Reviewed | 92.2 | |
| PRK06200 | 263 | 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrog | 92.13 | |
| PRK06349 | 426 | homoserine dehydrogenase; Provisional | 92.0 | |
| COG0002 | 349 | ArgC Acetylglutamate semialdehyde dehydrogenase [A | 91.96 | |
| PLN02383 | 344 | aspartate semialdehyde dehydrogenase | 91.94 | |
| PRK11579 | 346 | putative oxidoreductase; Provisional | 91.71 | |
| PRK06180 | 277 | short chain dehydrogenase; Provisional | 91.68 | |
| COG0686 | 371 | Ald Alanine dehydrogenase [Amino acid transport an | 91.51 | |
| PRK05693 | 274 | short chain dehydrogenase; Provisional | 91.51 | |
| PLN02968 | 381 | Probable N-acetyl-gamma-glutamyl-phosphate reducta | 91.45 | |
| cd01483 | 143 | E1_enzyme_family Superfamily of activating enzymes | 91.28 | |
| PRK03369 | 488 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 91.16 | |
| COG2910 | 211 | Putative NADH-flavin reductase [General function p | 91.14 | |
| PRK02472 | 447 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 90.76 | |
| PRK06139 | 330 | short chain dehydrogenase; Provisional | 90.69 | |
| PRK08265 | 261 | short chain dehydrogenase; Provisional | 90.65 | |
| PRK12828 | 239 | short chain dehydrogenase; Provisional | 90.64 | |
| TIGR03215 | 285 | ac_ald_DH_ac acetaldehyde dehydrogenase (acetylati | 90.59 | |
| PRK12429 | 258 | 3-hydroxybutyrate dehydrogenase; Provisional | 90.58 | |
| PLN02520 | 529 | bifunctional 3-dehydroquinate dehydratase/shikimat | 90.49 | |
| PRK08213 | 259 | gluconate 5-dehydrogenase; Provisional | 90.47 | |
| PRK07890 | 258 | short chain dehydrogenase; Provisional | 90.44 | |
| KOG1014|consensus | 312 | 90.43 | ||
| PRK05568 | 142 | flavodoxin; Provisional | 90.43 | |
| PF00056 | 141 | Ldh_1_N: lactate/malate dehydrogenase, NAD binding | 90.29 | |
| PRK00066 | 315 | ldh L-lactate dehydrogenase; Reviewed | 90.23 | |
| TIGR01851 | 310 | argC_other N-acetyl-gamma-glutamyl-phosphate reduc | 90.18 | |
| PRK07825 | 273 | short chain dehydrogenase; Provisional | 90.17 | |
| PRK05866 | 293 | short chain dehydrogenase; Provisional | 90.13 | |
| PF13561 | 241 | adh_short_C2: Enoyl-(Acyl carrier protein) reducta | 90.1 | |
| cd01076 | 227 | NAD_bind_1_Glu_DH NAD(P) binding domain of glutama | 89.97 | |
| PRK07024 | 257 | short chain dehydrogenase; Provisional | 89.96 | |
| PRK05867 | 253 | short chain dehydrogenase; Provisional | 89.95 | |
| PRK07067 | 257 | sorbitol dehydrogenase; Provisional | 89.88 | |
| TIGR01470 | 205 | cysG_Nterm siroheme synthase, N-terminal domain. T | 89.86 | |
| PRK07109 | 334 | short chain dehydrogenase; Provisional | 89.84 | |
| PRK06124 | 256 | gluconate 5-dehydrogenase; Provisional | 89.84 | |
| PF04016 | 147 | DUF364: Domain of unknown function (DUF364); Inter | 89.73 | |
| COG3967 | 245 | DltE Short-chain dehydrogenase involved in D-alani | 89.68 | |
| PRK08862 | 227 | short chain dehydrogenase; Provisional | 89.58 | |
| PRK07814 | 263 | short chain dehydrogenase; Provisional | 89.56 | |
| PRK07478 | 254 | short chain dehydrogenase; Provisional | 89.53 | |
| PRK14106 | 450 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.51 | |
| PRK08300 | 302 | acetaldehyde dehydrogenase; Validated | 89.49 | |
| TIGR03325 | 262 | BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydro | 89.49 | |
| PRK10538 | 248 | malonic semialdehyde reductase; Provisional | 89.45 | |
| PRK07074 | 257 | short chain dehydrogenase; Provisional | 89.43 | |
| PRK07454 | 241 | short chain dehydrogenase; Provisional | 89.42 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 89.39 | |
| PRK14874 | 334 | aspartate-semialdehyde dehydrogenase; Provisional | 89.39 | |
| PRK05993 | 277 | short chain dehydrogenase; Provisional | 89.31 | |
| PRK00683 | 418 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 89.26 | |
| PRK08643 | 256 | acetoin reductase; Validated | 89.07 | |
| PRK06270 | 341 | homoserine dehydrogenase; Provisional | 88.99 | |
| PRK13394 | 262 | 3-hydroxybutyrate dehydrogenase; Provisional | 88.97 | |
| PRK05872 | 296 | short chain dehydrogenase; Provisional | 88.96 | |
| PRK05653 | 246 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 88.93 | |
| TIGR03026 | 411 | NDP-sugDHase nucleotide sugar dehydrogenase. All o | 88.91 | |
| PTZ00082 | 321 | L-lactate dehydrogenase; Provisional | 88.88 | |
| PRK12829 | 264 | short chain dehydrogenase; Provisional | 88.84 | |
| PRK06196 | 315 | oxidoreductase; Provisional | 88.81 | |
| PRK07523 | 255 | gluconate 5-dehydrogenase; Provisional | 88.6 | |
| PRK08340 | 259 | glucose-1-dehydrogenase; Provisional | 88.51 | |
| PRK08267 | 260 | short chain dehydrogenase; Provisional | 88.48 | |
| PTZ00187 | 317 | succinyl-CoA synthetase alpha subunit; Provisional | 88.43 | |
| PRK05876 | 275 | short chain dehydrogenase; Provisional | 88.42 | |
| PRK07063 | 260 | short chain dehydrogenase; Provisional | 88.37 | |
| TIGR01296 | 339 | asd_B aspartate-semialdehyde dehydrogenase (peptid | 88.36 | |
| PRK06179 | 270 | short chain dehydrogenase; Provisional | 88.36 | |
| TIGR02415 | 254 | 23BDH acetoin reductases. One member of this famil | 88.3 | |
| PRK06482 | 276 | short chain dehydrogenase; Provisional | 88.22 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 88.17 | |
| PRK01045 | 298 | ispH 4-hydroxy-3-methylbut-2-enyl diphosphate redu | 88.15 | |
| PRK07062 | 265 | short chain dehydrogenase; Provisional | 88.15 | |
| TIGR03206 | 250 | benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydr | 88.12 | |
| PRK01390 | 460 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 88.08 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 87.94 | |
| TIGR02354 | 200 | thiF_fam2 thiamine biosynthesis protein ThiF, fami | 87.93 | |
| TIGR03466 | 328 | HpnA hopanoid-associated sugar epimerase. The sequ | 87.91 | |
| COG0771 | 448 | MurD UDP-N-acetylmuramoylalanine-D-glutamate ligas | 87.77 | |
| PRK12939 | 250 | short chain dehydrogenase; Provisional | 87.74 | |
| TIGR01082 | 448 | murC UDP-N-acetylmuramate--alanine ligase. UDP-N-a | 87.73 | |
| PRK07326 | 237 | short chain dehydrogenase; Provisional | 87.71 | |
| PRK06720 | 169 | hypothetical protein; Provisional | 87.7 | |
| TIGR01963 | 255 | PHB_DH 3-hydroxybutyrate dehydrogenase. This model | 87.64 | |
| PRK09186 | 256 | flagellin modification protein A; Provisional | 87.54 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 87.52 | |
| PRK05569 | 141 | flavodoxin; Provisional | 87.4 | |
| PRK08309 | 177 | short chain dehydrogenase; Provisional | 87.37 | |
| PRK06101 | 240 | short chain dehydrogenase; Provisional | 87.32 | |
| PRK06057 | 255 | short chain dehydrogenase; Provisional | 87.3 | |
| PRK06138 | 252 | short chain dehydrogenase; Provisional | 87.22 | |
| PRK08085 | 254 | gluconate 5-dehydrogenase; Provisional | 87.22 | |
| PRK08589 | 272 | short chain dehydrogenase; Validated | 87.15 | |
| PRK06719 | 157 | precorrin-2 dehydrogenase; Validated | 87.13 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 87.09 | |
| PRK12360 | 281 | 4-hydroxy-3-methylbut-2-enyl diphosphate reductase | 87.06 | |
| PRK07035 | 252 | short chain dehydrogenase; Provisional | 87.03 | |
| PRK08263 | 275 | short chain dehydrogenase; Provisional | 86.96 | |
| PRK06194 | 287 | hypothetical protein; Provisional | 86.83 | |
| PRK03803 | 448 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.78 | |
| PRK00141 | 473 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 86.54 | |
| PRK11863 | 313 | N-acetyl-gamma-glutamyl-phosphate reductase; Provi | 86.53 | |
| PRK07774 | 250 | short chain dehydrogenase; Provisional | 86.46 | |
| PLN00016 | 378 | RNA-binding protein; Provisional | 86.39 | |
| PRK07677 | 252 | short chain dehydrogenase; Provisional | 86.37 | |
| PF10100 | 429 | DUF2338: Uncharacterized protein conserved in bact | 86.29 | |
| PRK04207 | 341 | glyceraldehyde-3-phosphate dehydrogenase; Provisio | 86.24 | |
| PRK07231 | 251 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 86.23 | |
| PLN02253 | 280 | xanthoxin dehydrogenase | 86.14 | |
| PRK08277 | 278 | D-mannonate oxidoreductase; Provisional | 86.11 | |
| PRK06172 | 253 | short chain dehydrogenase; Provisional | 86.08 | |
| TIGR02356 | 202 | adenyl_thiF thiazole biosynthesis adenylyltransfer | 86.02 | |
| PRK07856 | 252 | short chain dehydrogenase; Provisional | 86.02 | |
| PRK00421 | 461 | murC UDP-N-acetylmuramate--L-alanine ligase; Provi | 86.0 | |
| TIGR01832 | 248 | kduD 2-deoxy-D-gluconate 3-dehydrogenase. This mod | 85.95 | |
| PLN02662 | 322 | cinnamyl-alcohol dehydrogenase family protein | 85.93 | |
| PLN00141 | 251 | Tic62-NAD(P)-related group II protein; Provisional | 85.93 | |
| PLN02650 | 351 | dihydroflavonol-4-reductase | 85.82 | |
| PRK07984 | 262 | enoyl-(acyl carrier protein) reductase; Provisiona | 85.81 | |
| PRK08177 | 225 | short chain dehydrogenase; Provisional | 85.76 | |
| PRK06949 | 258 | short chain dehydrogenase; Provisional | 85.72 | |
| cd05293 | 312 | LDH_1 A subgroup of L-lactate dehydrogenases. L-la | 85.69 | |
| TIGR01081 | 448 | mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl | 85.68 | |
| PLN02780 | 320 | ketoreductase/ oxidoreductase | 85.42 | |
| COG0761 | 294 | lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate redu | 85.35 | |
| PRK06500 | 249 | short chain dehydrogenase; Provisional | 85.08 | |
| COG1063 | 350 | Tdh Threonine dehydrogenase and related Zn-depende | 85.04 | |
| PRK05875 | 276 | short chain dehydrogenase; Provisional | 84.98 | |
| PRK05472 | 213 | redox-sensing transcriptional repressor Rex; Provi | 84.97 | |
| PRK10569 | 191 | NAD(P)H-dependent FMN reductase; Provisional | 84.89 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 84.78 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 84.66 | |
| PRK05854 | 313 | short chain dehydrogenase; Provisional | 84.64 | |
| PRK06398 | 258 | aldose dehydrogenase; Validated | 84.63 | |
| PRK15057 | 388 | UDP-glucose 6-dehydrogenase; Provisional | 84.59 | |
| TIGR01771 | 299 | L-LDH-NAD L-lactate dehydrogenase. This model repr | 84.51 | |
| PRK08251 | 248 | short chain dehydrogenase; Provisional | 84.29 | |
| PRK05884 | 223 | short chain dehydrogenase; Provisional | 84.28 | |
| COG0451 | 314 | WcaG Nucleoside-diphosphate-sugar epimerases [Cell | 84.24 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 84.15 | |
| PRK05717 | 255 | oxidoreductase; Validated | 84.1 | |
| PLN02989 | 325 | cinnamyl-alcohol dehydrogenase family protein | 84.09 | |
| PRK12384 | 259 | sorbitol-6-phosphate dehydrogenase; Provisional | 84.03 | |
| PRK06914 | 280 | short chain dehydrogenase; Provisional | 83.95 | |
| COG0074 | 293 | SucD Succinyl-CoA synthetase, alpha subunit [Energ | 83.94 | |
| PRK06505 | 271 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.93 | |
| PRK06079 | 252 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.91 | |
| PRK07097 | 265 | gluconate 5-dehydrogenase; Provisional | 83.88 | |
| PRK09242 | 257 | tropinone reductase; Provisional | 83.83 | |
| PRK07832 | 272 | short chain dehydrogenase; Provisional | 83.82 | |
| TIGR00216 | 280 | ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyroph | 83.75 | |
| PRK05671 | 336 | aspartate-semialdehyde dehydrogenase; Reviewed | 83.68 | |
| PRK07060 | 245 | short chain dehydrogenase; Provisional | 83.65 | |
| PRK06484 | 520 | short chain dehydrogenase; Validated | 83.65 | |
| PLN02686 | 367 | cinnamoyl-CoA reductase | 83.61 | |
| KOG4230|consensus | 935 | 83.42 | ||
| PRK05855 | 582 | short chain dehydrogenase; Validated | 83.4 | |
| PRK07533 | 258 | enoyl-(acyl carrier protein) reductase; Provisiona | 83.4 | |
| PRK07453 | 322 | protochlorophyllide oxidoreductase; Validated | 83.36 | |
| PF02056 | 183 | Glyco_hydro_4: Family 4 glycosyl hydrolase; InterP | 83.21 | |
| PRK08339 | 263 | short chain dehydrogenase; Provisional | 83.2 | |
| PLN02986 | 322 | cinnamyl-alcohol dehydrogenase family protein | 83.2 | |
| PRK05086 | 312 | malate dehydrogenase; Provisional | 83.18 | |
| PRK12936 | 245 | 3-ketoacyl-(acyl-carrier-protein) reductase NodG; | 83.15 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 82.92 | |
| PRK07688 | 339 | thiamine/molybdopterin biosynthesis ThiF/MoeB-like | 82.86 | |
| PRK07666 | 239 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 82.82 | |
| PLN02427 | 386 | UDP-apiose/xylose synthase | 82.82 | |
| PRK06197 | 306 | short chain dehydrogenase; Provisional | 82.76 | |
| PRK06841 | 255 | short chain dehydrogenase; Provisional | 82.76 | |
| PRK07889 | 256 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.71 | |
| PRK06935 | 258 | 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | 82.65 | |
| PRK06703 | 151 | flavodoxin; Provisional | 82.61 | |
| PRK08017 | 256 | oxidoreductase; Provisional | 82.58 | |
| PRK06756 | 148 | flavodoxin; Provisional | 82.57 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 82.54 | |
| cd01487 | 174 | E1_ThiF_like E1_ThiF_like. Member of superfamily o | 82.51 | |
| cd01336 | 325 | MDH_cytoplasmic_cytosolic Cytoplasmic and cytosoli | 82.48 | |
| PRK09072 | 263 | short chain dehydrogenase; Provisional | 82.41 | |
| PRK06463 | 255 | fabG 3-ketoacyl-(acyl-carrier-protein) reductase; | 82.24 | |
| COG0702 | 275 | Predicted nucleoside-diphosphate-sugar epimerases | 82.19 | |
| PRK10537 | 393 | voltage-gated potassium channel; Provisional | 82.17 | |
| PRK08415 | 274 | enoyl-(acyl carrier protein) reductase; Provisiona | 82.13 | |
| PRK12743 | 256 | oxidoreductase; Provisional | 82.1 | |
| PRK06181 | 263 | short chain dehydrogenase; Provisional | 81.96 | |
| PRK12826 | 251 | 3-ketoacyl-(acyl-carrier-protein) reductase; Revie | 81.95 | |
| TIGR01087 | 433 | murD UDP-N-acetylmuramoylalanine--D-glutamate liga | 81.81 | |
| PRK06114 | 254 | short chain dehydrogenase; Provisional | 81.66 | |
| PRK05650 | 270 | short chain dehydrogenase; Provisional | 81.56 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 81.53 | |
| TIGR00715 | 256 | precor6x_red precorrin-6x reductase. This enzyme w | 81.47 | |
| PRK07831 | 262 | short chain dehydrogenase; Provisional | 81.3 | |
| PRK06483 | 236 | dihydromonapterin reductase; Provisional | 81.29 | |
| cd00704 | 323 | MDH Malate dehydrogenase. Malate dehydrogenase (MD | 81.23 | |
| PRK09291 | 257 | short chain dehydrogenase; Provisional | 81.21 | |
| PLN02214 | 342 | cinnamoyl-CoA reductase | 81.07 | |
| PF14748 | 107 | P5CR_dimer: Pyrroline-5-carboxylate reductase dime | 81.03 | |
| PF08546 | 125 | ApbA_C: Ketopantoate reductase PanE/ApbA C termina | 81.03 | |
| PRK01438 | 480 | murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate syn | 80.88 |
| >COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-65 Score=431.12 Aligned_cols=276 Identities=38% Similarity=0.625 Sum_probs=266.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
.||.+||.||.++||+|++|||++++ .+.+.+.|+..+.++.|+++++|+||+|||+++++++|+++++|+.+.+++|+
T Consensus 10 ~MG~pmA~~L~~aG~~v~v~~r~~~ka~~~~~~~Ga~~a~s~~eaa~~aDvVitmv~~~~~V~~V~~g~~g~~~~~~~G~ 89 (286)
T COG2084 10 IMGSPMAANLLKAGHEVTVYNRTPEKAAELLAAAGATVAASPAEAAAEADVVITMLPDDAAVRAVLFGENGLLEGLKPGA 89 (286)
T ss_pred hhhHHHHHHHHHCCCEEEEEeCChhhhhHHHHHcCCcccCCHHHHHHhCCEEEEecCCHHHHHHHHhCccchhhcCCCCC
Confidence 39999999999999999999999999 66666779999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHH
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQV 159 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~ 159 (286)
+||||||++|..++++++.++++|..|+|+||+|++..+.+|++++|+||+++.|++++|+|+.++++++|+|+.|+|+.
T Consensus 90 i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~~~A~~GtLtimvGG~~~~f~r~~pvl~~~g~~i~~~G~~G~G~~ 169 (286)
T COG2084 90 IVIDMSTISPETARELAAALAAKGLEFLDAPVSGGVPGAAAGTLTIMVGGDAEAFERAKPVLEAMGKNIVHVGPVGAGQA 169 (286)
T ss_pred EEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCchhhhhCceEEEeCCCHHHHHHHHHHHHHhcCceEEECCCCchHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHH
Q psy764 160 AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMK 239 (286)
Q Consensus 160 ~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~ 239 (286)
+|++||++..+++.+++|++.+++++|+|++.++++++.++++||.++++.+ ++.+++|+|+|.++++.||++
T Consensus 170 ~Kl~nn~l~~~~~~a~aEAl~la~k~Gld~~~~~~vi~~~~~~s~~~e~~~~-------~m~~~~~~p~F~v~~~~KDl~ 242 (286)
T COG2084 170 AKLANNILLAGNIAALAEALALAEKAGLDPDVVLEVISGGAAGSWILENYGP-------RMLEGDFSPGFAVDLMLKDLG 242 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhccccCChHHHhhcc-------hhhcCCCCcchhHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988764 345899999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHh
Q psy764 240 LAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 240 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
++.+++++.|+++|++..+.++|+.+.+.|+|++|++++++.++
T Consensus 243 la~~~A~~~g~~lP~~~~~~~ly~~~~~~G~g~~D~sal~~~l~ 286 (286)
T COG2084 243 LALDAAKELGAPLPLTALAAELYAKAAAAGGGEEDFSALIKLLE 286 (286)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHhcCCCccChHHHHHHhC
Confidence 99999999999999999999999999999999999999999875
|
|
| >KOG0409|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-61 Score=400.76 Aligned_cols=277 Identities=40% Similarity=0.668 Sum_probs=266.2
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+||+.|+.||+++||+|+||||+.+++++|.+.|++++++|.|+++.||+||+|||++.++++++.+..|+++.+++|+.
T Consensus 45 ~MG~~M~~nLik~G~kVtV~dr~~~k~~~f~~~Ga~v~~sPaeVae~sDvvitmv~~~~~v~~v~~g~~Gvl~g~~~g~~ 124 (327)
T KOG0409|consen 45 NMGSAMVSNLIKAGYKVTVYDRTKDKCKEFQEAGARVANSPAEVAEDSDVVITMVPNPKDVKDVLLGKSGVLSGIRPGKK 124 (327)
T ss_pred cchHHHHHHHHHcCCEEEEEeCcHHHHHHHHHhchhhhCCHHHHHhhcCEEEEEcCChHhhHHHhcCCCcceeeccCCCc
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred E-EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHH
Q psy764 81 V-IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQV 159 (286)
Q Consensus 81 v-id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~ 159 (286)
. ||+||++|.+++++++.+..++.+|+|+||+|+...++.|+|+||+|||++.++++.++|+.+|++++|+|..|.|++
T Consensus 125 ~~vDmSTidp~~s~ei~~~i~~~~~~~vDAPVSGg~~~A~~G~LtimagGde~~~~~~~~~~~~mGk~~~~~G~~GnG~~ 204 (327)
T KOG0409|consen 125 ATVDMSTIDPDTSLEIAKAISNKGGRFVDAPVSGGVKGAEEGTLTIMAGGDEALFEAASPVFKLMGKNVVFLGGVGNGQA 204 (327)
T ss_pred eEEeccccCHHHHHHHHHHHHhCCCeEEeccccCCchhhhcCeEEEEecCcHHHHHHHHHHHHHhcceEEEecccCchHH
Confidence 8 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHH
Q psy764 160 AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMK 239 (286)
Q Consensus 160 ~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~ 239 (286)
+|++||++.+.++.+++|++.|+.++|+|+.+++++++.+.+.|+.. +.|+|++. +++|.|+|.++++.||++
T Consensus 205 ~Kl~nnm~~g~~M~g~aEal~la~r~GLd~~~l~eiln~G~~~S~~~--~~~~p~m~-----k~dy~p~f~~~~m~KDLg 277 (327)
T KOG0409|consen 205 AKLCNNMLLGSSMVGLAEALALADRLGLDAKKLLEILNTGRCWSSMF--YNPVPGML-----KGDYNPGFALKLMVKDLG 277 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCcccHHH--hCcCchhh-----cCCCCCcchHHHHHHHHH
Confidence 99999999999999999999999999999999999999987777765 45666654 789999999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 240 LAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 240 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
++.+.+++.+.|+|+...++|+|+.+.+.|+|+.|++++++.++.
T Consensus 278 la~~~a~~~~~~~P~~slA~qly~~~~a~G~g~~Dfs~V~~~~~~ 322 (327)
T KOG0409|consen 278 LALNAAESVKVPMPLGSLAHQLYKSMKALGYGDKDFSAVYRAFRR 322 (327)
T ss_pred HHHHhhhccCCCCchHHHHHHHHHHHHhcCCCccccHHHHHHHHH
Confidence 999999999999999999999999999999999999999988764
|
|
| >TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-56 Score=384.20 Aligned_cols=283 Identities=49% Similarity=0.795 Sum_probs=268.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.++|++|.++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||+++++++++.+.+++.+.+++|++
T Consensus 6 ~mG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~~~~~~advVil~vp~~~~~~~v~~g~~~l~~~~~~g~~ 85 (288)
T TIGR01692 6 NMGGPMAANLLKAGHPVRVFDLFPDAVEEAVAAGAQAAASPAEAAEGADRVITMLPAGQHVISVYSGDEGILPKVAKGSL 85 (288)
T ss_pred HhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCcchHhhcCCCCCE
Confidence 38999999999999999999999999999999999889999999999999999999988999999776678888899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
|||+||++|.+++++.+.+.++|+.|+|+||+|++..+..|++++|+||+++.+++++++|+.++++++|+|+.|+|+++
T Consensus 86 vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg~~~a~~g~l~~~~gg~~~~~~~~~~~l~~~g~~~~~~g~~g~g~~~ 165 (288)
T TIGR01692 86 LIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGGVGGARAGTLTFMVGGVAEEFAAAEPVLGPMGRNIVHCGDHGAGQAA 165 (288)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|++.+.++.+++|++.+++++|+|+++++++++.+++.||....+.+.+.+....+.+++|.++|++.++.||+++
T Consensus 166 Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~KDl~~ 245 (288)
T TIGR01692 166 KICNNMLLGISMIGTAEAMALGEKLGLDPKVLFEIANTSSGRCWSSDTYNPVPGVMPQAPASNGYQGGFGTALMLKDLGL 245 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCcHHHHhCCCccccccccccCCCCCCcchHHHHhhHHH
Confidence 99999999999999999999999999999999999999999999887777766665555567999999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHh
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
+.+++++.|+++|+.+.+.++|+.+.++|+|++|+++++++++
T Consensus 246 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 288 (288)
T TIGR01692 246 AQDAAKSAGAPTPLGALARQLYSLFDDKGHGGKDFSSVIQLLR 288 (288)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHhC
Confidence 9999999999999999999999999999999999999999863
|
This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446). |
| >PRK15059 tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-56 Score=384.07 Aligned_cols=277 Identities=26% Similarity=0.393 Sum_probs=261.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.+|+++|.++||+|++|||++. .+++.+.|+..+.++.++++++|+||+|||++.++++++.+++|+.+.+.+|++
T Consensus 10 ~MG~~ma~~L~~~G~~v~v~~~~~~-~~~~~~~g~~~~~s~~~~~~~advVi~~v~~~~~v~~v~~~~~g~~~~~~~g~i 88 (292)
T PRK15059 10 IMGTPMAINLARAGHQLHVTTIGPV-ADELLSLGAVSVETARQVTEASDIIFIMVPDTPQVEEVLFGENGCTKASLKGKT 88 (292)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHh-HHHHHHcCCeecCCHHHHHhcCCEEEEeCCChHHHHHHHcCCcchhccCCCCCE
Confidence 3899999999999999999999975 577777899889999999999999999999999999999887788888889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
|||+||++|.+++++++.+.++|+.|+|+||+|++..++.|++.+|+||+++.+++++|+|+.++++++|+|+.|+|+.+
T Consensus 89 vvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg~~~a~~g~l~~~~gG~~~~~~~~~p~l~~~g~~~~~~G~~G~g~~~ 168 (292)
T PRK15059 89 IVDMSSISPIETKRFARQVNELGGDYLDAPVSGGEIGAREGTLSIMVGGDEAVFERVKPLFELLGKNITLVGGNGDGQTC 168 (292)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCCHHHHhcCcEEEEEcCCHHHHHHHHHHHHHHcCCcEEeCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|++.+.++.+++|++.+++++|+|+++++++++.+++.||.++.+.+ ++.+++|.++|+++++.||+++
T Consensus 169 Kl~~N~l~~~~~~a~~Ea~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f~l~~~~KDl~l 241 (292)
T PRK15059 169 KVANQIIVALNIEAVSEALLFASKAGADPVRVRQALMGGFASSRILEVHGE-------RMIKRTFNPGFKIALHQKDLNL 241 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCcccCHHHHhhch-------hhhcCCCCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999998888998876654 3357899999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
+.+++++.|+++|+.+.++++|+.+.+.|+|++|++++++++++.
T Consensus 242 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sa~~~~~~~~ 286 (292)
T PRK15059 242 ALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSALVQALELM 286 (292)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998753
|
|
| >PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-54 Score=374.94 Aligned_cols=278 Identities=29% Similarity=0.384 Sum_probs=260.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||+++|.+|+++||+|++|||++++.+++.+.|+..+.++.++++++|+||+|+|++.+++.++.+.+++.+.+++|++
T Consensus 11 ~mG~~mA~~l~~~G~~V~v~d~~~~~~~~~~~~g~~~~~s~~~~~~~aDvVi~~vp~~~~~~~vl~~~~~i~~~l~~g~l 90 (296)
T PRK15461 11 QMGSPMASNLLKQGHQLQVFDVNPQAVDALVDKGATPAASPAQAAAGAEFVITMLPNGDLVRSVLFGENGVCEGLSRDAL 90 (296)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcccHhhcCCCCCE
Confidence 38999999999999999999999999999998899899999999999999999999988899999887788888889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
+||+||+.|.+++++.+.+.++|+.|+|+||+|++..+..|++++|+||+++.+++++|+|+.+|.+++|+|+.|+|+++
T Consensus 91 vid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~~~~a~~g~l~~~~gg~~~~~~~~~p~l~~~g~~~~~~g~~G~g~~~ 170 (296)
T PRK15461 91 VIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRTSDNAITGTLLLLAGGTAEQVERATPILMAMGNELINAGGPGMGIRV 170 (296)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCCHHHHHhCcEEEEECCCHHHHHHHHHHHHHHcCCeEeeCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|++...++.+++|++.+++++|+|++.++++++.+...++.+..+.+ +++.+++|.++|+++++.||+++
T Consensus 171 Kl~~N~~~~~~~~~~~Ea~~l~~~~Gld~~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~~~~~f~~~~~~KD~~l 244 (296)
T PRK15461 171 KLINNYMSIALNALSAEAAVLCEALGLSFDVALKVMSGTAAGKGHFTTTWP------NKVLKGDLSPAFMIDLAHKDLGI 244 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccChHHHcccc------chhccCCCCCCcchHHHHhhHHH
Confidence 999999999999999999999999999999999999988766665443221 23457899999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
+.+++++.|+++|+.+.++++|+.+.+.|+|++|++++++++++
T Consensus 245 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 288 (296)
T PRK15461 245 ALDVANQLHVPMPLGAASREVYSQARAAGRGRQDWSAILEQVRV 288 (296)
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCCChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=413.99 Aligned_cols=277 Identities=22% Similarity=0.335 Sum_probs=264.9
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.+||+||+++||+|++|||++++++++.+.|+..++|+.|++++||+||+|||+++++++|+++.+|+.+.+++|++
T Consensus 14 ~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~~~s~~e~a~~advVi~~l~~~~~v~~V~~g~~g~~~~l~~g~i 93 (1378)
T PLN02858 14 SLSFELASSLLRSGFKVQAFEISTPLMEKFCELGGHRCDSPAEAAKDAAALVVVLSHPDQVDDVFFGDEGAAKGLQKGAV 93 (1378)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEEcCChHHHHHHHhchhhHHhcCCCcCE
Confidence 38999999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcC--CceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEec-CCcchH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQ--ITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHC-GDSGNG 157 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g--~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~-g~~g~a 157 (286)
||||||++|.+++++++.+.++| +.|+|+||+|++..++.|++++|+||+++.+++++|+|+.+|++++|+ |+.|+|
T Consensus 94 ivd~STi~p~~~~~la~~l~~~g~~~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~~G~~G~g 173 (1378)
T PLN02858 94 ILIRSTILPLQLQKLEKKLTERKEQIFLVDAYVSKGMSDLLNGKLMIIASGRSDAITRAQPFLSAMCQKLYTFEGEIGAG 173 (1378)
T ss_pred EEECCCCCHHHHHHHHHHHHhcCCceEEEEccCcCCHHHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEEecCCCCHh
Confidence 99999999999999999999999 899999999999999999999999999999999999999999998865 899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHH
Q psy764 158 QVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKD 237 (286)
Q Consensus 158 ~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd 237 (286)
+++|+++|++.+.++.+++|++.+++++|+|++.++++++.+++.||.++.+.+ ++.+++|.++|+++++.||
T Consensus 174 ~~~KL~nN~l~~~~~~a~aEAl~la~~~Gld~~~l~~vl~~s~g~s~~~~~~~~-------~~~~~d~~~~F~l~l~~KD 246 (1378)
T PLN02858 174 SKVKMVNELLEGIHLVASAEAMALGVRAGIHPWIIYDIISNAAGSSWIFKNHVP-------LLLKDDYIEGRFLNVLVQN 246 (1378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCccCHHHHhhhh-------HhhcCCCCCCchhHHHHHH
Confidence 999999999999999999999999999999999999999999999998876543 2347899999999999999
Q ss_pred HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 238 MKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 238 ~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
++++.++|++.|+++|+.+.++++|+.+.+.|+|++|++++++++++
T Consensus 247 l~la~~~A~~~g~~lpl~~~a~~~~~~a~~~G~g~~D~sav~~~~~~ 293 (1378)
T PLN02858 247 LGIVLDMAKSLPFPLPLLAVAHQQLISGSSSMQGDDTATSLAKVWEK 293 (1378)
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999875
|
|
| >TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-50 Score=346.87 Aligned_cols=278 Identities=28% Similarity=0.453 Sum_probs=260.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.++|.+|+++||+|++|||++++.+.+.+.|...++++.+++++||+||+|+|++.+++.++...+++.+.+++|++
T Consensus 9 ~mG~~iA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDivi~~vp~~~~~~~v~~~~~~~~~~~~~g~i 88 (291)
T TIGR01505 9 IMGSPMSINLAKAGYQLHVTTIGPEVADELLAAGAVTAETARQVTEQADVIFTMVPDSPQVEEVAFGENGIIEGAKPGKT 88 (291)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCcccCCHHHHHhcCCEEEEecCCHHHHHHHHcCcchHhhcCCCCCE
Confidence 38999999999999999999999999999998898888899999999999999999988999998765567777889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
|||+||+.|.+++++.+.+.++|++|+++|++|++..+..+++.+++||+++.+++++++|+.++.+++++|+.|.|+.+
T Consensus 89 ivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~lg~~~~~~g~~g~a~~~ 168 (291)
T TIGR01505 89 LVDMSSISPIESKRFAKAVKEKGIDYLDAPVSGGEIGAIEGTLSIMVGGDQAVFDRVKPLFEALGKNIVLVGGNGDGQTC 168 (291)
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCCEEecCCCCCHHHHhcCCEEEEecCCHHHHHHHHHHHHHhcCCeEEeCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|++.+.++.+++|++.++++.|+|++++.++++.+.+.||.++.+.+ .+.+++|.++|+++++.||+++
T Consensus 169 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gid~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~~~f~~~~~~KDl~~ 241 (291)
T TIGR01505 169 KVANQIIVALNIEAVSEALVFASKAGVDPVRVRQALRGGLAGSTVLEVKGE-------RVIDRTFKPGFRIDLHQKDLNL 241 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhCh-------hhhcCCCCCCcchHHHHHHHHH
Confidence 999999999999999999999999999999999999998888887665433 2347889999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
+.+++++.|+++|+.+++.++|+.+.+.|+|++|++++++++++.
T Consensus 242 ~~~~a~~~g~~~~~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~~~ 286 (291)
T TIGR01505 242 ALDSAKAVGANLPNTATVQELFNTLRANGGGQLDHSALVQALELL 286 (291)
T ss_pred HHHHHHHcCCCChhHHHHHHHHHHHHhcCCCccChHHHHHHHHHh
Confidence 999999999999999999999999999999999999999998763
|
This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism. |
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-49 Score=342.73 Aligned_cols=277 Identities=31% Similarity=0.487 Sum_probs=259.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|.+|++.|++|.+|||++++.+.+.+.|+..++++.+++++||+||+|+|++.+++.++.+.+++.+.+++|++|
T Consensus 13 mG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~g~~~~~~~~e~~~~~d~vi~~vp~~~~~~~v~~~~~~~~~~~~~g~ii 92 (296)
T PRK11559 13 MGKPMSKNLLKAGYSLVVYDRNPEAVAEVIAAGAETASTAKAVAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTVV 92 (296)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHcCcchHhhcCCCCcEE
Confidence 89999999999999999999999999999888988889999999999999999999889999987666678888999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAK 161 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~K 161 (286)
||+||+.|.+++++.+.+.++|++|+++|++|+++.+..+++.+++||+++.+++++++|+.++.+++++|+.|+|+++|
T Consensus 93 id~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~~l~~~~~~~~~~g~~g~a~~~K 172 (296)
T PRK11559 93 IDMSSIAPLASREIAAALKAKGIEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVTK 172 (296)
T ss_pred EECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCCHHHHhhCcEEEEECCCHHHHHHHHHHHHHhcCCeEEeCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHH
Q psy764 162 LCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLA 241 (286)
Q Consensus 162 l~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~ 241 (286)
+++|++.+.++.+++|++.++++.|+|++++.+++..+.+.|+.++.+.+ ++..++|.++|+++++.||++++
T Consensus 173 l~~n~~~~~~~~~~~Ea~~l~~~~Gi~~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~d~~~~f~~~~~~KDl~~~ 245 (296)
T PRK11559 173 LANQVIVALNIAAMSEALVLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPGFRIDLHIKDLANA 245 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcCcccCHHHHhhch-------HhhcCCCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888887765543 22468899999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 242 EDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 242 ~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
.+++++.|+++|+.+.+.++|+.+.+.|+|++|++++++++++.
T Consensus 246 ~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 289 (296)
T PRK11559 246 LDTSHGVGAPLPLTAAVMEMMQALKADGLGTADHSALACYYEKL 289 (296)
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCcHHHHHHHHHh
Confidence 99999999999999999999999999999999999999998753
|
|
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-49 Score=393.18 Aligned_cols=276 Identities=24% Similarity=0.350 Sum_probs=262.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.+||++|+++||+|++|||++++.+.+.+.|+..++++.+++++||+||+|||+++++++|+.+..|+.+.+++|++|
T Consensus 335 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~Ga~~~~s~~e~~~~aDvVi~~V~~~~~v~~Vl~g~~g~~~~l~~g~iv 414 (1378)
T PLN02858 335 MGFGMASHLLKSNFSVCGYDVYKPTLVRFENAGGLAGNSPAEVAKDVDVLVIMVANEVQAENVLFGDLGAVSALPAGASI 414 (1378)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEecCChHHHHHHHhchhhHHhcCCCCCEE
Confidence 89999999999999999999999999999999988899999999999999999999999999998877888888999999
Q ss_pred EEcCCCCchHHHHHHHHHHh--cCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEec-CCcchHH
Q psy764 82 IDSSTVDPQVPQTLSNLARE--KQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHC-GDSGNGQ 158 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~--~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~-g~~g~a~ 158 (286)
||+||++|.+++++++.+.+ +|+.|+|+||+|++..+..|++++|+||+++.+++++|+|+.++.+++|+ |++|+|+
T Consensus 415 Vd~STvsP~~~~~la~~l~~~g~g~~~lDAPVsGg~~~A~~G~L~imvgG~~~~~~~~~plL~~lg~~i~~~~g~~G~a~ 494 (1378)
T PLN02858 415 VLSSTVSPGFVIQLERRLENEGRDIKLVDAPVSGGVKRAAMGTLTIMASGTDEALKSAGSVLSALSEKLYVIKGGCGAGS 494 (1378)
T ss_pred EECCCCCHHHHHHHHHHHHhhCCCcEEEEccCCCChhhhhcCCceEEEECCHHHHHHHHHHHHHHhCcEEEeCCCCCHHH
Confidence 99999999999999999998 89999999999999999999999999999999999999999999998885 6799999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHH
Q psy764 159 VAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDM 238 (286)
Q Consensus 159 ~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~ 238 (286)
++|+++|++.+.++.+++|++.+++++|+|+++++++++.+++.||.++.+.| .+.+++|.++|+++++.||+
T Consensus 495 ~~KL~nN~l~~~~~aa~aEal~la~k~Gld~~~l~evl~~s~g~s~~~~~~~~-------~~l~~d~~~~f~l~l~~KDl 567 (1378)
T PLN02858 495 GVKMVNQLLAGVHIASAAEAMAFGARLGLNTRKLFDIISNAGGTSWMFENRVP-------HMLDNDYTPYSALDIFVKDL 567 (1378)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccChhhhhccc-------hhhcCCCCCCchhHHHHHHH
Confidence 99999999999999999999999999999999999999999999998765543 23478999999999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 239 KLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 239 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
+++.+++++.|+++|+.+.++++|+.+.++|+|++|++++++++++
T Consensus 568 ~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~G~g~~D~sav~~~~~~ 613 (1378)
T PLN02858 568 GIVSREGSSRKIPLHLSTVAHQLFLAGSASGWGRIDDAAVVKVYET 613 (1378)
T ss_pred HHHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccChHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999875
|
|
| >PLN02350 phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=336.40 Aligned_cols=255 Identities=16% Similarity=0.209 Sum_probs=231.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----CCc---ccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----GAN---MALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~---~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||++||+||+++||+|.+|||++++++.+.+. |+. .+.|++|+++. +|+||+|||+++++++|+. ++
T Consensus 17 MG~~mA~nL~~~G~~V~V~NRt~~k~~~l~~~~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~~~aV~~Vi~---gl 93 (493)
T PLN02350 17 MGQNLALNIAEKGFPISVYNRTTSKVDETVERAKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKAGAPVDQTIK---AL 93 (493)
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhhhcCCcccccCCCHHHHHhcCCCCCEEEEECCCcHHHHHHHH---HH
Confidence 99999999999999999999999999998764 544 68899999986 9999999999999999995 58
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC-----
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR----- 146 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~----- 146 (286)
.+.+.+|++|||+||+.|.+++++.+.+.++|++|+|+||+|++..+..|+ ++|+||+++++++++|+|+.++.
T Consensus 94 ~~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG~~gA~~G~-~im~GG~~~a~~~v~pvL~~ia~k~~~~ 172 (493)
T PLN02350 94 SEYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGGEEGARNGP-SLMPGGSFEAYKNIEDILEKVAAQVDDG 172 (493)
T ss_pred HhhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCCHHHhcCCC-eEEecCCHHHHHHHHHHHHHHhhhcCCC
Confidence 899999999999999999999999999999999999999999999999999 89999999999999999999995
Q ss_pred -CeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHH---HHccCCCcccccccCCCCCccccCCC
Q psy764 147 -NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDV---INTSSGRCWSSEVYNPVPGVLSNVPA 221 (286)
Q Consensus 147 -~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~---~~~~~~~s~~~~~~~~~~~~~~~~~~ 221 (286)
.++|+|+.|+|+++|+++|.+.+.++++++|++.++++ .|+|++++.++ ++.+.+.||..+...+. +.
T Consensus 173 ~~v~~vG~~GaG~~vKlv~N~i~~~~m~~iaEA~~l~~~~~Gld~~~l~~vf~~~~~g~~~S~llei~~~~-------l~ 245 (493)
T PLN02350 173 PCVTYIGPGGAGNFVKMVHNGIEYGDMQLISEAYDVLKSVGGLSNEELAEVFAEWNKGELESFLIEITADI-------FS 245 (493)
T ss_pred CcEEEeCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHcCCCccchHHHHHHHH-------Hh
Confidence 49999999999999999999999999999999999999 59999999999 45778888887665442 12
Q ss_pred CC-CCCCCccchhHHHHHH------HHHHHHhhcCCCchH-HHHHHHHHHHHHH
Q psy764 222 SN-NYNGGFKISLLAKDMK------LAEDLANRCTAQTDL-SKLATSIYKRLMD 267 (286)
Q Consensus 222 ~~-~~~~~f~~~~~~kd~~------~~~~~a~~~g~~~p~-~~~~~~~~~~a~~ 267 (286)
.+ +|.++|.++.+.||+. +..+.+.++|+|+|+ .+++.++|.....
T Consensus 246 ~~d~~~~~f~l~~i~Kd~~~kGTg~w~~~~A~~lgv~~p~i~~av~~r~~s~~k 299 (493)
T PLN02350 246 VKDDKGDGYLVDKILDKTGMKGTGKWTVQQAAELSVAAPTIAASLDARYLSGLK 299 (493)
T ss_pred hcCCCCCCchHHHHHhhhcccchHHHHHHHHHHhCCCccHHHHHHHHHHHhccH
Confidence 33 4778999999999999 899999999999999 8888887776543
|
|
| >PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-45 Score=320.51 Aligned_cols=269 Identities=22% Similarity=0.258 Sum_probs=245.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++|++|.++|++|.+|||++++.+.+.+.|+..++++++++++ +|+||+|+|++.++++++. ++.+.+++|
T Consensus 11 mG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~s~~~~~~~~~~advVi~~vp~~~~~~~v~~---~i~~~l~~g 87 (299)
T PRK12490 11 MGGNMAERLREDGHEVVGYDVNQEAVDVAGKLGITARHSLEELVSKLEAPRTIWVMVPAGEVTESVIK---DLYPLLSPG 87 (299)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecCCHHHHHHhCCCCCEEEEEecCchHHHHHHH---HHhccCCCC
Confidence 8999999999999999999999999999988899999999999876 6999999999889999986 488888899
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC---CeEecCCcc
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR---NIVHCGDSG 155 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~---~v~~~g~~g 155 (286)
++|||+||+.|.+++++.+.+.++|+.|+|+||+|++..++.|+ ++++||+++++++++|+|+.++. +++|+|++|
T Consensus 88 ~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~g 166 (299)
T PRK12490 88 DIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGGVWGLRNGY-CLMVGGDKEIYDRLEPVFKALAPEGPGYVHAGPVG 166 (299)
T ss_pred CEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCCHHHHhcCC-eEEecCCHHHHHHHHHHHHHhcCcCCcEEEECCcC
Confidence 99999999999999999999999999999999999999999998 89999999999999999999997 799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHcc-CCCcccccccCCCCCccccCCCCCCCCCCccch
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKLG--MNAKLLSDVINTS-SGRCWSSEVYNPVPGVLSNVPASNNYNGGFKIS 232 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G--l~~~~~~~~~~~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 232 (286)
+|+.+|+++|++.+.++.+++|++.++++.| +|++.++++++.+ .+.|+.++.+.+. + ..+++ .|.++
T Consensus 167 ~a~~~Kl~~n~~~~~~~~~~aEa~~l~~~~g~~ld~~~~~~~~~~~~~~~s~~l~~~~~~--~-----~~~~~--~~~l~ 237 (299)
T PRK12490 167 SGHFLKMVHNGIEYGMMQAYAEGLELLDKSDFDFDVEDVARLWRNGSVIRSWLLDLTVKA--L-----AEDPK--LAGIK 237 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHcCCcHHHHHHHHHHHHH--H-----hhCCC--hhhhh
Confidence 9999999999999999999999999999999 9999999999964 4888877665442 1 23332 36789
Q ss_pred hHHHHH---HHHHHHHhhcCCCchHHHHHH-HHHHHHHHcCCCCCchhHHHHHHh
Q psy764 233 LLAKDM---KLAEDLANRCTAQTDLSKLAT-SIYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 233 ~~~kd~---~~~~~~a~~~g~~~p~~~~~~-~~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
.+.||+ +++.+.+++.|+|+|++..+. .+|....++|.|++|++++.+++.
T Consensus 238 ~~~KD~~~~~l~~~~A~~~g~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~f~ 292 (299)
T PRK12490 238 GYVNDSGEGRWTVEEAIELAVAAPVIAASLFMRFASQEDDSFHMKVVSALRNQFG 292 (299)
T ss_pred HHHHhcCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCccCChHHHHHHHHHHhhC
Confidence 999998 899999999999999999996 899999999999999999998874
|
|
| >PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-42 Score=302.23 Aligned_cols=269 Identities=25% Similarity=0.311 Sum_probs=239.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
.||+++|++|+++||+|.+|||++++.+.+.+.|+..+++++|+++. +|+||+|+|++.++++++. ++.+.+++
T Consensus 10 ~MG~~mA~~L~~~g~~v~v~dr~~~~~~~~~~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~~~~~~v~~---~l~~~l~~ 86 (301)
T PRK09599 10 RMGGNMARRLLRGGHEVVGYDRNPEAVEALAEEGATGADSLEELVAKLPAPRVVWLMVPAGEITDATID---ELAPLLSP 86 (301)
T ss_pred HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCeecCCHHHHHhhcCCCCEEEEEecCCcHHHHHHH---HHHhhCCC
Confidence 38999999999999999999999999999988899999999999876 6999999999878899986 47788889
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC----CeEecCC
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR----NIVHCGD 153 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~----~v~~~g~ 153 (286)
|++|||+||+.|..++++.+.+.++|+.|+|+||+|++..++.|. ++|+||+++.+++++|+|+.++. +++|+|+
T Consensus 87 g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~~~~a~~g~-~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~~G~ 165 (301)
T PRK09599 87 GDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGGVWGLERGY-CLMIGGDKEAVERLEPIFKALAPRAEDGYLHAGP 165 (301)
T ss_pred CCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcCHHHHhcCC-eEEecCCHHHHHHHHHHHHHHcccccCCeEeECC
Confidence 999999999999999999999999999999999999999999996 89999999999999999999998 8999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCCCCCcc
Q psy764 154 SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK--LGMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNGGFK 230 (286)
Q Consensus 154 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~--~Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~ 230 (286)
.|+|+.+|+++|++.+.++.+++|++.++++ .|+|+++++++++.+. ++|+.++.+.+. + .++ +.|.
T Consensus 166 ~G~g~~~Kl~~n~l~~~~~~~~aEa~~l~~~~~~gld~~~~~~~~~~~~~~~s~~l~~~~~~-------~-~~~--~~~~ 235 (301)
T PRK09599 166 VGAGHFVKMVHNGIEYGMMQAYAEGFELLEASRFDLDLAAVAEVWRRGSVIRSWLLDLTADA-------L-AED--PKLD 235 (301)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHhCCcHHHHHHHHHHHHH-------H-hcC--CCHH
Confidence 9999999999999999999999999999999 9999999999999875 688877665432 1 122 2232
Q ss_pred -chhHHHH---HHHHHHHHhhcCCCchHHHHHHH-HHHHHHHcCCCCCchhHHHHHHh
Q psy764 231 -ISLLAKD---MKLAEDLANRCTAQTDLSKLATS-IYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 231 -~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~~-~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
+....|| ++++.+.|.+.|+++|.+.++.. .|....+.|+|+.|++++.+++.
T Consensus 236 ~~~~~~kd~~~~~~~~~~A~~~~~~~P~~~~a~~~~~~~~~~~~~~~~~~~a~~~~fg 293 (301)
T PRK09599 236 EISGYVEDSGEGRWTVEEAIDLAVPAPVIAAALFMRFRSRQEDSFADKVVAALRNGFG 293 (301)
T ss_pred HHHHHHHhhCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHhcC
Confidence 3334555 58999999999999999999554 58888899999999999998874
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=302.34 Aligned_cols=246 Identities=22% Similarity=0.278 Sum_probs=213.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----CCcccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----GANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..||+||+++||+|.+|||++++++++.+. |+..++|++|++++ +|+||+|||+++++++|+. ++.+
T Consensus 1 MG~~mA~nL~~~G~~V~v~nrt~~~~~~l~~~~g~~~g~~~~~s~~e~v~~l~~~~~Ii~mv~~g~~v~~Vi~---~l~~ 77 (459)
T PRK09287 1 MGKNLALNIASHGYTVAVYNRTPEKTDEFLAEEGKGKKIVPAYTLEEFVASLEKPRKILLMVKAGAPVDAVIE---QLLP 77 (459)
T ss_pred CcHHHHHHHHhCCCeEEEECCCHHHHHHHHHhhCCCCCeEeeCCHHHHHhhCCCCCEEEEECCCchHHHHHHH---HHHh
Confidence 89999999999999999999999999999874 58899999999985 8999999999999999996 4899
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCe-----
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNI----- 148 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v----- 148 (286)
.+.+|++|||+||+.|..+++..+.+.++|++|+|+||+|++.+|+.|. ++|+||+++++++++|+|+.++.++
T Consensus 78 ~l~~GdiiID~gn~~~~~t~~~~~~l~~~Gi~fvdapVSGG~~gA~~G~-siM~GG~~~a~~~~~piL~~ia~~~~~g~~ 156 (459)
T PRK09287 78 LLEKGDIIIDGGNSNYKDTIRREKELAEKGIHFIGMGVSGGEEGALHGP-SIMPGGQKEAYELVAPILEKIAAKVEDGEP 156 (459)
T ss_pred cCCCCCEEEECCCCCHHHHHHHHHHHHhcCCeEEecCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhhcCCCC
Confidence 9999999999999999999999999999999999999999999999998 9999999999999999999999887
Q ss_pred --EecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HccCCCcccccccCCCCCccccCCCC
Q psy764 149 --VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV-KLGMNAKLLSDVI---NTSSGRCWSSEVYNPVPGVLSNVPAS 222 (286)
Q Consensus 149 --~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~-~~Gl~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~ 222 (286)
+|+|+.|+|+++||++|.+.+.++++++|++.+++ +.|+|++++.+++ +.+.+.||..+...+. +..
T Consensus 157 c~~~vG~~GaGh~vKmvhN~ie~~~mq~iaEa~~l~~~~~Gl~~~~l~~v~~~wn~g~~~S~l~ei~~~~-------l~~ 229 (459)
T PRK09287 157 CVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYDLLKDGLGLSAEEIADVFAEWNKGELNSYLIEITADI-------LRQ 229 (459)
T ss_pred ceeeeCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccChHHHhHhHH-------Hhc
Confidence 89999999999999999999999999999999999 5999999999999 5677888887765442 224
Q ss_pred CCCCCCc-cchhH------HHHHHHHHHHHhhcCCCchHHHHH
Q psy764 223 NNYNGGF-KISLL------AKDMKLAEDLANRCTAQTDLSKLA 258 (286)
Q Consensus 223 ~~~~~~f-~~~~~------~kd~~~~~~~a~~~g~~~p~~~~~ 258 (286)
+++..+. -++.. .-.-+.....|-++|+|.|++..+
T Consensus 230 ~d~~~~~~~~d~i~d~~~~~gtg~Wt~~~a~~~~v~~~~i~~A 272 (459)
T PRK09287 230 KDEETGKPLVDVILDKAGQKGTGKWTSQSALDLGVPLTLITEA 272 (459)
T ss_pred CCCCCCCcchHHhcCcccCCcHHHHHHHHHHHhCCChHHHHHH
Confidence 4442222 12211 112245777888899998865543
|
|
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-37 Score=281.65 Aligned_cols=248 Identities=20% Similarity=0.245 Sum_probs=209.8
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----C--CcccCCHHHHhh---cCcEEEEecCChhHHHHHhcCCccc
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----G--ANMALSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~---~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
.||++||++|+++||+|++|||++++++.+.+. | +..+++++|+++ ++|+||+|||+++++++|+.+ +
T Consensus 11 ~MG~~lA~nL~~~G~~V~v~dr~~~~~~~l~~~~~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~~~~v~~vi~~---l 87 (470)
T PTZ00142 11 VMGQNLALNIASRGFKISVYNRTYEKTEEFVKKAKEGNTRVKGYHTLEELVNSLKKPRKVILLIKAGEAVDETIDN---L 87 (470)
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhhhhcCCcceecCCHHHHHhcCCCCCEEEEEeCChHHHHHHHHH---H
Confidence 389999999999999999999999999988764 5 446889999997 489999999999999999974 8
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCC----
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN---- 147 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~---- 147 (286)
.+.+.+|++|||+||..|..+++..+.+.++|++|+|+||+|++.+++.|. ++|+||+++++++++|+|+.++.+
T Consensus 88 ~~~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG~~gA~~G~-~lm~GG~~~a~~~~~piL~~ia~~~~~~ 166 (470)
T PTZ00142 88 LPLLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGGEEGARYGP-SLMPGGNKEAYDHVKDILEKCSAKVGDS 166 (470)
T ss_pred HhhCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCCHHHHhcCC-EEEEeCCHHHHHHHHHHHHHHhhhcCCC
Confidence 889999999999999999999999999999999999999999999999999 899999999999999999999987
Q ss_pred --eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHHH---ccCCCcccccccCCCCCccccCCC
Q psy764 148 --IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV-KLGMNAKLLSDVIN---TSSGRCWSSEVYNPVPGVLSNVPA 221 (286)
Q Consensus 148 --v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~-~~Gl~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~ 221 (286)
++|+|+.|+|+.+||++|.+.+.++++++|++.+++ +.|+|++++.+++. .+...||..+.......
T Consensus 167 ~~~~~~G~~GaGh~vKmvhN~ie~~~m~~iaEa~~l~~~~~gl~~~~l~~v~~~w~~g~~~S~l~ei~~~~~~------- 239 (470)
T PTZ00142 167 PCVTYVGPGSSGHYVKMVHNGIEYGDMQLISESYKLMKHILGMSNEELSEVFNKWNEGILNSYLIEITAKILA------- 239 (470)
T ss_pred CeEEEECCCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHcCCCccCHHHHHHHHHhh-------
Confidence 899999999999999999999999999999999998 79999999999984 67788888765443111
Q ss_pred CCCCCC-CccchhH------HHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 222 SNNYNG-GFKISLL------AKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 222 ~~~~~~-~f~~~~~------~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
..+-.. ++-++.. .-.-+...+.|-++|+|.|++..+.
T Consensus 240 ~~d~~~~~~~l~~i~d~~~~~gtg~wt~~~a~~~~v~~p~i~~a~ 284 (470)
T PTZ00142 240 KKDDLGEEHLVDKILDIAGSKGTGKWTVQEALERGIPVPTMAASV 284 (470)
T ss_pred cccccCCCcchhhhcCcccCCchHHhHHHHHHHcCCCchHHHHHH
Confidence 111000 1111111 1122457788889999998765543
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=268.52 Aligned_cols=246 Identities=20% Similarity=0.274 Sum_probs=217.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh---hcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~---~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||+++|++|.++||+|.+|||++++++.+.+.|+....++.+++ +++|+||+|+|++ .+++++.+ +.+.+++|
T Consensus 11 mG~~la~~L~~~g~~V~~~dr~~~~~~~l~~~g~~~~~s~~~~~~~~~~~dvIi~~vp~~-~~~~v~~~---l~~~l~~g 86 (298)
T TIGR00872 11 MGANIVRRLAKRGHDCVGYDHDQDAVKAMKEDRTTGVANLRELSQRLSAPRVVWVMVPHG-IVDAVLEE---LAPTLEKG 86 (298)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCcccCCHHHHHhhcCCCCEEEEEcCch-HHHHHHHH---HHhhCCCC
Confidence 89999999999999999999999999999988888788887765 4589999999987 89999974 88888999
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC---CeEecCCcc
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR---NIVHCGDSG 155 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~---~v~~~g~~g 155 (286)
++|||+||..|..+.+..+.+.++|++|+|+|++|++..+..| +++++||+++.+++++++|+.++. .++|+|+.|
T Consensus 87 ~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg~~~a~~G-~~~~~gG~~~~~~~~~~~l~~~~~~~~~~~~~G~~G 165 (298)
T TIGR00872 87 DIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGGVWGRERG-YCFMIGGDGEAFARAEPLFADVAPEEQGYLYCGPCG 165 (298)
T ss_pred CEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCCHHHHhcC-CeeeeCCCHHHHHHHHHHHHHhcCcCCCEEEECCcc
Confidence 9999999999999999999999999999999999999999999 589999999999999999999986 589999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCCCCCccch
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKL--GMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNGGFKIS 232 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~--Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 232 (286)
+++.+|+++|.+.+.++.+++|++.++++. |+|++++.++++.+. .+||+++.+.+. + ..+++.+.|...
T Consensus 166 ~~~~~K~~~n~l~~~~~~~~aE~~~l~~~~g~~ld~~~~~~i~~~g~~~~s~~l~~~~~~---~----~~~~~~~~~~~~ 238 (298)
T TIGR00872 166 SGHFVKMVHNGIEYGMMAAIAEGFEILRNSQFDFDIPEVARVWRRGSVIRSWLLDLTAIA---F----RESPDLAEFSGR 238 (298)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCHHHHHHHHcCCchhHhHHHHHHHHH---H----hcCCcHHHHHHH
Confidence 999999999999999999999999999998 569999999999876 588887665432 1 123333445544
Q ss_pred -hHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 233 -LLAKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 233 -~~~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
...+|.+.+...+.+.|+|.|.+.++.
T Consensus 239 ~~~~~~~r~~v~~a~~~g~p~P~~~~al 266 (298)
T TIGR00872 239 VSDSGEGRWTVIAAIDLGVPAPVIATSL 266 (298)
T ss_pred HHhhccHHHHHHHHHHhCCCHHHHHHHH
Confidence 467888999999999999999998854
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-37 Score=277.78 Aligned_cols=248 Identities=19% Similarity=0.234 Sum_probs=208.9
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----CCcccCCHHHHhh---cCcEEEEecCChhHHHHHhcCCcccc
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----GANMALSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~~---~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
.||.+||++|+++||+|++|||++++++++.+. ++..+.+++++++ ++|+||+|||+++.+++|+.+ +.
T Consensus 9 ~MG~~mA~nL~~~G~~V~v~drt~~~~~~l~~~~~~g~~~~~~~s~~e~v~~l~~~dvIil~v~~~~~v~~Vi~~---l~ 85 (467)
T TIGR00873 9 VMGSNLALNMADHGFTVSVYNRTPEKTDEFLAEHAKGKKIVGAYSIEEFVQSLERPRKIMLMVKAGAPVDAVINQ---LL 85 (467)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhhccCCCCceecCCHHHHHhhcCCCCEEEEECCCcHHHHHHHHH---HH
Confidence 389999999999999999999999999999865 2567788988874 689999999998999999964 88
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCC-----
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN----- 147 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~----- 147 (286)
+.+.+|++|||+||+.|..+++..+.+.++|++|+|+||+|++.+++.|. ++|+||+++++++++|+|+.++.+
T Consensus 86 ~~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG~~gA~~G~-~im~GG~~~a~~~~~p~L~~ia~~~~~~~ 164 (467)
T TIGR00873 86 PLLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGGEEGARKGP-SIMPGGSAEAWPLVAPIFQKIAAKVDGEP 164 (467)
T ss_pred hhCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCCHHHHhcCC-cCCCCCCHHHHHHHHHHHHHHhhhcCCCC
Confidence 88999999999999999999999999999999999999999999999998 899999999999999999999987
Q ss_pred -eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHHHHHH---HccCCCcccccccCCCCCccccCCCC
Q psy764 148 -IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV-KLGMNAKLLSDVI---NTSSGRCWSSEVYNPVPGVLSNVPAS 222 (286)
Q Consensus 148 -v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~-~~Gl~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~ 222 (286)
++|+|+.|+|+.+||++|.+.+.++++++|++.+++ +.|+|++++.+++ +.+.++||..+...+... .
T Consensus 165 ~~~~~G~~GsG~~vKmvhN~i~~~~m~~~aEa~~ll~~~~g~~~~~l~~v~~~w~~~~~~S~l~~~~~~~~~-------~ 237 (467)
T TIGR00873 165 CCTWIGPDGAGHYVKMVHNGIEYGDMQLICEAYDILKDGLGLSNEEIAEVFTEWNNGELDSYLIEITADILK-------K 237 (467)
T ss_pred ceEEECCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCcccchHHHhHHHHHh-------c
Confidence 489999999999999999999999999999999985 7999999999999 577888998776554211 1
Q ss_pred CCCCCCccchhH------HHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 223 NNYNGGFKISLL------AKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 223 ~~~~~~f~~~~~------~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
++-...+-++.. .-.-+.....|-++|+|.|++....
T Consensus 238 ~d~~~~~~l~~i~~~~~~~gtg~wt~~~a~~~~v~~p~i~~av 280 (467)
T TIGR00873 238 KDEDGKPLVDKILDTAGQKGTGKWTAISALDLGVPVTLITESV 280 (467)
T ss_pred cCCCCCccHHhhcCcccCccHHHHHHHHHHHcCCCchHHHHHH
Confidence 110001111111 1123457778888999988765543
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=260.13 Aligned_cols=244 Identities=19% Similarity=0.157 Sum_probs=208.7
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-------------------cC-CcccCCHHHHhhcCcEEEEecCChhH
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-------------------EG-ANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
.||+++|.+|+++||+|++||+++++++.+++ .| ++.++++.++++++|+||+|||++..
T Consensus 10 ~~G~~lA~~La~~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~~~~~~~~~~advvii~vpt~~~ 89 (411)
T TIGR03026 10 YVGLPLAALLADLGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRATTDYEDAIRDADVIIICVPTPLK 89 (411)
T ss_pred chhHHHHHHHHhcCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEECCHHHHHhhCCEEEEEeCCCCC
Confidence 38999999999999999999999999887764 23 56677889999999999999998753
Q ss_pred ---------HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc--CCc-eEeccCCCCHHhhhcCce-----
Q psy764 61 ---------VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QIT-FLDAPVSGGTKAAQEATL----- 123 (286)
Q Consensus 61 ---------~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~--g~~-~~~~pv~g~~~~a~~g~l----- 123 (286)
+..++. ++.+.+++|++||++||+.|.+++++.+.+.++ |.. +.+.|+.++|..+..|.+
T Consensus 90 ~~~~~d~~~v~~~~~---~i~~~l~~g~lvi~~STv~pgt~~~l~~~~~~~~~g~~~~~d~~v~~~Pe~~~~G~~~~~~~ 166 (411)
T TIGR03026 90 EDGSPDLSYVESAAE---TIAKHLRKGATVVLESTVPPGTTEEVVKPILERASGLKLGEDFYLAYNPEFLREGNAVHDLL 166 (411)
T ss_pred CCCCcChHHHHHHHH---HHHHhcCCCCEEEEeCcCCCCchHHHHHHHHHhhcCCCCCCCceEEECCCcCCCCChhhhhc
Confidence 566654 477788899999999999999999997665544 443 667888888888888886
Q ss_pred ---EEEecCCHhhHHHHHHHHHHhc-CCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 124 ---TFMVGGDKSSLEKAKPILKCMG-RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 124 ---~~~~gg~~~~~~~~~~ll~~~g-~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
.+++|++++.+++++++|+.++ ..++++++++.|+.+|+++|++.+.++++++|+..+|++.|+|+++++++++.+
T Consensus 167 ~~~~iv~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~la~~~GiD~~~v~~~~~~~ 246 (411)
T TIGR03026 167 NPDRIVGGETEEAGEAVAELYAPIIEDGPVLVTSIETAEMIKLAENTFRAVKIAFANELARICEALGIDVYEVIEAAGTD 246 (411)
T ss_pred CCCEEEEeCCHHHHHHHHHHHHHhccCCCEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhCCC
Confidence 7899999999999999999998 578999999999999999999999999999999999999999999999998753
Q ss_pred CCCcccccccCCCCCccccCCCCCCCCCC--ccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 200 SGRCWSSEVYNPVPGVLSNVPASNNYNGG--FKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 200 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
. ++..+.|.|+ |...++.||+.++.+.+++.|+++|++++++++.+.-
T Consensus 247 ~------------------~i~~~~~~pg~g~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~~N~~~ 296 (411)
T TIGR03026 247 P------------------RIGFNFLNPGPGVGGHCIPKDPLALIYKAKELGYNPELIEAAREINDSQ 296 (411)
T ss_pred C------------------CCCCCcCCCCCCCCCCchhhhHHHHHHHHHhcCCCcHHHHHHHHHHHHh
Confidence 1 0113445554 4678899999999999999999999999999986654
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=228.28 Aligned_cols=151 Identities=36% Similarity=0.617 Sum_probs=139.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|+++||+|++|||++++.+++.+.|++.++|++|+++++|+||+|||+++++++++++++ +.+.+++|++|
T Consensus 12 mG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~g~~~~~s~~e~~~~~dvvi~~v~~~~~v~~v~~~~~-i~~~l~~g~ii 90 (163)
T PF03446_consen 12 MGSAMARNLAKAGYEVTVYDRSPEKAEALAEAGAEVADSPAEAAEQADVVILCVPDDDAVEAVLFGEN-ILAGLRPGKII 90 (163)
T ss_dssp HHHHHHHHHHHTTTEEEEEESSHHHHHHHHHTTEEEESSHHHHHHHBSEEEE-SSSHHHHHHHHHCTT-HGGGS-TTEEE
T ss_pred HHHHHHHHHHhcCCeEEeeccchhhhhhhHHhhhhhhhhhhhHhhcccceEeecccchhhhhhhhhhH-HhhccccceEE
Confidence 89999999999999999999999999999999999999999999999999999999999999999877 89999999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEe-cCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVH-CGD 153 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~-~g~ 153 (286)
||+||++|.+++++++.+.++|++|+|+||+|++..+..|++++|+||+++.+++++|+|+.++.+++| +|+
T Consensus 91 id~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg~~~a~~g~l~~~~gG~~~~~~~~~~~l~~~~~~v~~~~G~ 163 (163)
T PF03446_consen 91 IDMSTISPETSRELAERLAAKGVRYVDAPVSGGPPGAEEGTLTIMVGGDEEAFERVRPLLEAMGKNVYHYVGP 163 (163)
T ss_dssp EE-SS--HHHHHHHHHHHHHTTEEEEEEEEESHHHHHHHTTEEEEEES-HHHHHHHHHHHHHHEEEEEEE-ES
T ss_pred EecCCcchhhhhhhhhhhhhccceeeeeeeecccccccccceEEEccCCHHHHHHHHHHHHHHhCCceeeeCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999984 475
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-31 Score=212.36 Aligned_cols=244 Identities=27% Similarity=0.350 Sum_probs=205.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh---cCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~---~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||..+.++|.+.||+|.+||+|++.++++...|++.++|+.+.+. ...+|.++||..+.+..|+.. +.+.+.+|
T Consensus 11 MG~n~v~rl~~~ghdvV~yD~n~~av~~~~~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it~~vi~~---la~~L~~G 87 (300)
T COG1023 11 MGANLVRRLLDGGHDVVGYDVNQTAVEELKDEGATGAASLDELVAKLSAPRIVWLMVPAGDITDAVIDD---LAPLLSAG 87 (300)
T ss_pred hhHHHHHHHHhCCCeEEEEcCCHHHHHHHHhcCCccccCHHHHHHhcCCCcEEEEEccCCCchHHHHHH---HHhhcCCC
Confidence 899999999999999999999999999999999999999998875 578999999988889999986 88899999
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC---CeEecCCcc
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR---NIVHCGDSG 155 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~---~v~~~g~~g 155 (286)
.+|||-.+.....+++..+.+.++|++|+|+..+|++.+++.|. ++|+||+++++++++|+|+.+.. -..|+|+.|
T Consensus 88 DivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG~~G~~~G~-~lMiGG~~~a~~~~~pif~~lA~ge~Gyl~~Gp~G 166 (300)
T COG1023 88 DIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGGVWGAERGY-CLMIGGDEEAVERLEPIFKALAPGEDGYLYCGPSG 166 (300)
T ss_pred CEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCCchhhhcCc-eEEecCcHHHHHHHHHHHHhhCcCcCccccccCCC
Confidence 99999999999999999999999999999999999999999998 89999999999999999999975 468999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHccC-CCcccccccCC----CCCccccCCCCCCCCCC
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKL--GMNAKLLSDVINTSS-GRCWSSEVYNP----VPGVLSNVPASNNYNGG 228 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~--Gl~~~~~~~~~~~~~-~~s~~~~~~~~----~~~~~~~~~~~~~~~~~ 228 (286)
+|+.+||++|-+.|+++++++|.+.+.++. .+|.+.+.++-+.++ -+||.+++... -+++-+ + .+.....
T Consensus 167 sGHfvKMVHNGIEYGmM~a~aEGfelL~~s~fD~D~~~VA~vW~hGSVIrSWLldLt~~Af~~d~~L~q--~-~g~v~dS 243 (300)
T COG1023 167 SGHFVKMVHNGIEYGMMQAIAEGFELLKNSPFDYDLEAVAEVWNHGSVIRSWLLDLTAEAFKKDPDLDQ--I-SGRVSDS 243 (300)
T ss_pred cchhHHHHhccHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhCcchHHHHHHHHHHHHHhhCCCHHH--h-cCeeccC
Confidence 999999999999999999999999999975 567889999988874 77888765322 111100 0 0000000
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 229 FKISLLAKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 229 f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
. +=+...+.+-++|+|.|++..+.
T Consensus 244 G-------EGrWTv~~aldlgvpaPVia~al 267 (300)
T COG1023 244 G-------EGRWTVEEALDLGVPAPVIALAL 267 (300)
T ss_pred C-------CceeehHHHHhcCCCchHHHHHH
Confidence 0 11234567788899999876654
|
|
| >PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=236.10 Aligned_cols=264 Identities=13% Similarity=0.132 Sum_probs=217.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------C------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------G------ANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------g------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
||+++|.+|+++||+|++|+|++++.+.+.+. | +..+++++++++++|+||+|+|+. ++++++.
T Consensus 15 mG~~ia~~L~~~G~~V~~~~r~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~aD~Vi~~v~~~-~~~~v~~- 92 (328)
T PRK14618 15 WGTALAVLAASKGVPVRLWARRPEFAAALAAERENREYLPGVALPAELYPTADPEEALAGADFAVVAVPSK-ALRETLA- 92 (328)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhCcccccCCCCcCCCCeEEeCCHHHHHcCCCEEEEECchH-HHHHHHH-
Confidence 89999999999999999999999988888754 3 346678999999999999999975 6777764
Q ss_pred CccccccCCCCCEEEEcCC-CCchH--HHHHHHHHHh---cCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHH
Q psy764 68 SDGILKHAKPGVIVIDSST-VDPQV--PQTLSNLARE---KQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPIL 141 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st-~~p~~--~~~~~~~~~~---~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 141 (286)
.++++.++|++++ ..|.. .+.+.+.+.+ +++.++++|..........+++.+++|++.+.+++++++|
T Consensus 93 ------~l~~~~~vi~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~~~~gP~~a~~~~~~~~~~~~~~~~~~~~~~~v~~ll 166 (328)
T PRK14618 93 ------GLPRALGYVSCAKGLAPDGGRLSELARVLEFLTQARVAVLSGPNHAEEIARFLPAATVVASPEPGLARRVQAAF 166 (328)
T ss_pred ------hcCcCCEEEEEeeccccCCCccchHHHHHHHhcCCCeEEEECccHHHHHHcCCCeEEEEEeCCHHHHHHHHHHh
Confidence 2557789999998 46664 6677777766 6777888887766666666888999999999999999999
Q ss_pred HHhcCCeE--------ecCC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc----cC
Q psy764 142 KCMGRNIV--------HCGD---------SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINT----SS 200 (286)
Q Consensus 142 ~~~g~~v~--------~~g~---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~----~~ 200 (286)
+..+.+++ +++. .|.+..+|+.+|.....+..++.|+..+++++|+|++++++++.. ++
T Consensus 167 ~~~~~~v~~~~di~g~~~~~~lkN~~ai~~G~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~~gDl~~t 246 (328)
T PRK14618 167 SGPSFRVYTSRDRVGVELGGALKNVIALAAGMVDGLKLGDNAKAALITRGLREMVRFGVALGAEEATFYGLSGLGDLIAT 246 (328)
T ss_pred CCCcEEEEecCCccchhhhHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHhCCCccchhcCcchhheeeE
Confidence 99998776 3553 588999999999999999999999999999999999999999876 47
Q ss_pred CCcccccccCCCCCccccCCCCC---C-CCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchh
Q psy764 201 GRCWSSEVYNPVPGVLSNVPASN---N-YNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFS 276 (286)
Q Consensus 201 ~~s~~~~~~~~~~~~~~~~~~~~---~-~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~ 276 (286)
+.|+.++++.++..+. ++ + +.++|.+.++.||++++.+++++.++++|+++.+++++ +++.|..
T Consensus 247 ~~s~~~rn~~~g~~~~-----~g~~~~~~~~~~~~~~g~kd~~~~~~la~~~~~~~Pl~~~~~~~~-------~~~~~~~ 314 (328)
T PRK14618 247 ATSPHSRNRAAGEAIV-----RGVDREHLEAGGKVVEGLYTVKALDAWAKAHGHDLPIVEAVARVA-------RGGWDPL 314 (328)
T ss_pred eccCCCccHHHHHHHh-----CCCCHHHHHHcCCEEecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHH
Confidence 7888887765432232 34 3 56789999999999999999999999999999999987 4566777
Q ss_pred HHHHHHhhc
Q psy764 277 YIYEFLKNK 285 (286)
Q Consensus 277 ~~~~~~~~~ 285 (286)
++++.+-++
T Consensus 315 ~~~~~~~~~ 323 (328)
T PRK14618 315 AGLRSLMGR 323 (328)
T ss_pred HHHHHHhcC
Confidence 776665443
|
|
| >PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.2e-30 Score=230.94 Aligned_cols=241 Identities=14% Similarity=0.130 Sum_probs=192.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc----------------ccCCHHHHhhcCcEEEEecCCh------h
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN----------------MALSLSTLASGAEFIISMLPAS------Q 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~----------------~~~s~~e~~~~adivi~~v~~~------~ 59 (286)
||.++|.+|++ ||+|++||+++++++.++ .|.. .+++..+++++||++|+|||+| .
T Consensus 17 vGlpmA~~la~-~~~V~g~D~~~~~ve~l~-~G~~~~~e~~~~~l~~~g~l~~t~~~~~~~~advvii~Vptp~~~~~~~ 94 (425)
T PRK15182 17 VGLPLAVEFGK-SRQVVGFDVNKKRILELK-NGVDVNLETTEEELREARYLKFTSEIEKIKECNFYIITVPTPINTYKQP 94 (425)
T ss_pred chHHHHHHHhc-CCEEEEEeCCHHHHHHHH-CcCCCCCCCCHHHHHhhCCeeEEeCHHHHcCCCEEEEEcCCCCCCCCCc
Confidence 89999999887 699999999999999998 4432 3445556789999999999998 4
Q ss_pred HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc--CCceEe--------ccCCCCHHhhhcCceE-EEec
Q psy764 60 DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLD--------APVSGGTKAAQEATLT-FMVG 128 (286)
Q Consensus 60 ~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~--g~~~~~--------~pv~g~~~~a~~g~l~-~~~g 128 (286)
+++.|+...+++.+.+++|++||++||+.|.+++++.+...++ |..+.+ .|+.+|.......++. ++.|
T Consensus 95 dl~~v~~a~~~i~~~l~~g~lVI~~STv~pgtt~~~~~~~l~~~~g~~~~~~~~~~~~PE~v~~G~a~~~~~~~~riv~G 174 (425)
T PRK15182 95 DLTPLIKASETVGTVLNRGDIVVYESTVYPGCTEEECVPILARMSGMTFNQDFYVGYSPERINPGDKKHRLTNIKKITSG 174 (425)
T ss_pred chHHHHHHHHHHHHhcCCCCEEEEecCCCCcchHHHHHHHHHhccCCCcCCCeeEeeCCCcCCCCcccccccCCCeEEEC
Confidence 5577777666788999999999999999999999765544333 555544 3455554444444433 5556
Q ss_pred CCHhhHHHHHHHHHHhc-CCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCccccc
Q psy764 129 GDKSSLEKAKPILKCMG-RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSE 207 (286)
Q Consensus 129 g~~~~~~~~~~ll~~~g-~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~ 207 (286)
++++..+.++++++.+. ..++++++.+.|+.+|+++|++.+.++++++|+..+|++.|+|.++++++++.. |.+.
T Consensus 175 ~~~~~~~~~~~ly~~~~~~~~~~~~~~~~AE~~Kl~~N~~~av~Ia~~NE~a~lae~~GiD~~~v~~a~~~~----~~~~ 250 (425)
T PRK15182 175 STAQIAELIDEVYQQIISAGTYKAESIKVAEAAKVIENTQRDLNIALVNELAIIFNRLNIDTEAVLRAAGSK----WNFL 250 (425)
T ss_pred CCHHHHHHHHHHHHHHhhcCcEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCC----CCcc
Confidence 67788889999999996 457889999999999999999999999999999999999999999999996533 3221
Q ss_pred ccCCCCCccccCCCCCCCCCC-ccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q psy764 208 VYNPVPGVLSNVPASNNYNGG-FKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKR 264 (286)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~-f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 264 (286)
. +.|| |...|+.||...+...+++.|.+++++++++++-+.
T Consensus 251 ~----------------~~pG~vGG~ClpkD~~~L~~~a~~~g~~~~l~~~a~~iN~~ 292 (425)
T PRK15182 251 P----------------FRPGLVGGHCIGVDPYYLTHKSQGIGYYPEIILAGRRLNDN 292 (425)
T ss_pred c----------------CCCCccccccccccHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 1 1234 667799999999999999999999999999987554
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-29 Score=225.06 Aligned_cols=241 Identities=18% Similarity=0.162 Sum_probs=191.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-CCHHHH---------------hhcCcEEEEecCCh------
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-LSLSTL---------------ASGAEFIISMLPAS------ 58 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s~~e~---------------~~~adivi~~v~~~------ 58 (286)
.||.++|.+|+++||+|++||+++++++.+...+.... ..+.+. .++||+||+|||+|
T Consensus 13 ~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~~~~~~aDvvii~vptp~~~~~~ 92 (415)
T PRK11064 13 YIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRATTTPEPADAFLIAVPTPFKGDHE 92 (415)
T ss_pred hhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeeecccccCCEEEEEcCCCCCCCCC
Confidence 38999999999999999999999999998653322221 122222 24799999999997
Q ss_pred ---hHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCC--------------ceEecc--CCCCHHhhh
Q psy764 59 ---QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI--------------TFLDAP--VSGGTKAAQ 119 (286)
Q Consensus 59 ---~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~--------------~~~~~p--v~g~~~~a~ 119 (286)
..+..++. ++.+.+++|++||++||+.|.+++++...+.+++. .++++| +..+.....
T Consensus 93 ~dl~~v~~~~~---~i~~~l~~g~iVI~~STv~pgtt~~~~~~l~~~~~~~~~~~~~g~~~~f~v~~~PE~~~~G~~~~~ 169 (415)
T PRK11064 93 PDLTYVEAAAK---SIAPVLKKGDLVILESTSPVGATEQMAEWLAEARPDLTFPQQAGEQADINIAYCPERVLPGQVMVE 169 (415)
T ss_pred cChHHHHHHHH---HHHHhCCCCCEEEEeCCCCCCHHHHHHHHHHHhccCCcccccccCCCCeEEEECCCccCCCChhhh
Confidence 56666665 48888999999999999999999999887776543 346777 666666666
Q ss_pred cCceEEEecC-CHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc
Q psy764 120 EATLTFMVGG-DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINT 198 (286)
Q Consensus 120 ~g~l~~~~gg-~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~ 198 (286)
..++..++|| +++.+++++++|+.++..+++++++++|+.+|+++|++.+.++++++|+..+|++.|+|++++.+.++.
T Consensus 170 ~~~~~~vvgG~~~~~~~~~~~ly~~~~~~~~~~~~~~~Ae~~Kl~~N~~~a~~ia~~nE~~~lae~~GiD~~~v~~~~~~ 249 (415)
T PRK11064 170 LIKNDRVIGGMTPVCSARASELYKIFLEGECVVTNSRTAEMCKLTENSFRDVNIAFANELSLICADQGINVWELIRLANR 249 (415)
T ss_pred hcCCCEEEEeCCHHHHHHHHHHHHHhcCCCeeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhcc
Confidence 6667788899 899999999999999988899999999999999999999999999999999999999999999999875
Q ss_pred cCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 199 SSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 199 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
.+. . ....| .+||...|+.||..++.. +.+.+.+++++++++-+.-
T Consensus 250 ~~r---i-~~l~p--------------G~G~GG~ClpkD~~~L~~---~~~~~~~l~~~a~~~N~~~ 295 (415)
T PRK11064 250 HPR---V-NILQP--------------GPGVGGHCIAVDPWFIVA---QNPQQARLIRTAREVNDGK 295 (415)
T ss_pred CCC---c-ccCCC--------------CCCCCCccccccHHHHHH---hcCCccHHHHHHHHHHHHh
Confidence 421 1 11122 245667799999987643 4566788998888765443
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=216.74 Aligned_cols=233 Identities=18% Similarity=0.232 Sum_probs=188.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH----------------cCCccc--CCHHHHhhcCcEEEEecCCh-----
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK----------------EGANMA--LSLSTLASGAEFIISMLPAS----- 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~----------------~g~~~~--~s~~e~~~~adivi~~v~~~----- 58 (286)
||+++|..|+ .||+|++||+++++++.+.+ .+.+.. .++.+++++||+||+|||++
T Consensus 11 vGl~~A~~lA-~G~~VigvD~d~~kv~~l~~g~~~~~e~~l~~~l~~~~~~l~~t~~~~~~~~~ad~vii~Vpt~~~~k~ 89 (388)
T PRK15057 11 VGLSNGLLIA-QNHEVVALDILPSRVAMLNDRISPIVDKEIQQFLQSDKIHFNATLDKNEAYRDADYVIIATPTDYDPKT 89 (388)
T ss_pred HHHHHHHHHH-hCCcEEEEECCHHHHHHHHcCCCCCCCcCHHHHHHhCCCcEEEecchhhhhcCCCEEEEeCCCCCccCC
Confidence 8999997777 49999999999999998876 233443 34778889999999999988
Q ss_pred -----hHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCce--------EE
Q psy764 59 -----QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL--------TF 125 (286)
Q Consensus 59 -----~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l--------~~ 125 (286)
..+++++. ++.+ +++|++||++||++|.+++++.+.+.+.++.| +|..+..|++ .+
T Consensus 90 ~~~dl~~v~~v~~---~i~~-~~~g~lVV~~STv~pgtt~~l~~~~~~~~v~~-------~PE~l~~G~a~~d~~~p~rv 158 (388)
T PRK15057 90 NYFNTSSVESVIK---DVVE-INPYAVMVIKSTVPVGFTAAMHKKYRTENIIF-------SPEFLREGKALYDNLHPSRI 158 (388)
T ss_pred CCcChHHHHHHHH---HHHh-cCCCCEEEEeeecCCchHHHHHHHhhcCcEEE-------CcccccCCcccccccCCCEE
Confidence 56777775 3766 68999999999999999999998877665444 6667777887 89
Q ss_pred EecCCHhhHHHHHHHHHH--hcCCeE-ecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCC
Q psy764 126 MVGGDKSSLEKAKPILKC--MGRNIV-HCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGR 202 (286)
Q Consensus 126 ~~gg~~~~~~~~~~ll~~--~g~~v~-~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~ 202 (286)
++|++++..+++.++|.. ++..+. ++++.++|+.+|+++|.+.+.++++++|+..+|++.|+|.+++.++++..+.
T Consensus 159 v~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~NE~a~lae~~GiD~~eV~~a~~~d~r- 237 (388)
T PRK15057 159 VIGERSERAERFAALLQEGAIKQNIPTLFTDSTEAEAIKLFANTYLAMRVAYFNELDSYAESLGLNTRQIIEGVCLDPR- 237 (388)
T ss_pred EEEcCcHHHHHHHHHHHhhhhcCCCceeeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHhcCCCC-
Confidence 999998888999999854 555444 6899999999999999999999999999999999999999999999876431
Q ss_pred cccccc-cCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 203 CWSSEV-YNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 203 s~~~~~-~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
.... ..| .+||...|+.||...+...+ .+++++++++++++-+..
T Consensus 238 --i~~~~l~p--------------G~G~GG~ClpkD~~~L~~~~--~~~~~~l~~~~~~~N~~~ 283 (388)
T PRK15057 238 --IGNHYNNP--------------SFGYGGYCLPKDTKQLLANY--QSVPNNLISAIVDANRTR 283 (388)
T ss_pred --CCCccCCC--------------CCCCCCcChhhhHHHHHHhc--cCCCcHHHHHHHHHHHHh
Confidence 1110 012 24677889999999887665 567789999998875543
|
|
| >PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.7e-29 Score=218.58 Aligned_cols=266 Identities=17% Similarity=0.207 Sum_probs=209.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------------CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------------GANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
||+.+|.+|+++||+|++|||++++.+.+.+. ++..+.++.++++++|+||+|+|+ .++++++.+
T Consensus 12 mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~-~~~~~v~~~ 90 (325)
T PRK00094 12 WGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRATTDLAEALADADLILVAVPS-QALREVLKQ 90 (325)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEeCCHHHHHhCCCEEEEeCCH-HHHHHHHHH
Confidence 89999999999999999999999998888775 355667888899999999999996 588888874
Q ss_pred CccccccCCCCCEEEEcC-CCCchHHHHHHHHHHhc-----CCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHH
Q psy764 68 SDGILKHAKPGVIVIDSS-TVDPQVPQTLSNLAREK-----QITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPIL 141 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~s-t~~p~~~~~~~~~~~~~-----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 141 (286)
+.+.+.++++||+++ ++.+.+.+++.+.+.+. ...++.+|.......+..+++.++.+++.+.++++.++|
T Consensus 91 ---l~~~~~~~~~vi~~~ngv~~~~~~~~~~~l~~~~~~~~~~~~~~~P~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l 167 (325)
T PRK00094 91 ---LKPLLPPDAPIVWATKGIEPGTGKLLSEVLEEELPDLAPIAVLSGPSFAKEVARGLPTAVVIASTDEELAERVQELF 167 (325)
T ss_pred ---HHhhcCCCCEEEEEeecccCCCCCcHHHHHHHHcCCCCceEEEECccHHHHHHcCCCcEEEEEeCCHHHHHHHHHHh
Confidence 777778899999998 77777666666666554 344667777766655666677788888999999999999
Q ss_pred HHhcCCeEecCC-----------------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc----C
Q psy764 142 KCMGRNIVHCGD-----------------SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS----S 200 (286)
Q Consensus 142 ~~~g~~v~~~g~-----------------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~----~ 200 (286)
+..+.++++..+ .|.+..+|+++|.+...+..+++|++.++++.|+|+++++++...+ +
T Consensus 168 ~~~~~~~~~~~d~~g~~~~k~~~N~~~~~~g~~~~~k~~~n~~~~~~~~~~~E~~~la~~~G~d~~~~~~~~~~~~~~~~ 247 (325)
T PRK00094 168 HSPYFRVYTNTDVIGVELGGALKNVIAIAAGIADGLGLGDNARAALITRGLAEITRLGVALGANPETFLGLAGLGDLVLT 247 (325)
T ss_pred CCCCEEEEecCCcchhhHHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCChhhhhcccHhhhhhhh
Confidence 999877665543 2778889999999999999999999999999999999999876544 3
Q ss_pred CCcccccccCCCCCccccCCCCCC-C-----CCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCc
Q psy764 201 GRCWSSEVYNPVPGVLSNVPASNN-Y-----NGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKD 274 (286)
Q Consensus 201 ~~s~~~~~~~~~~~~~~~~~~~~~-~-----~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d 274 (286)
+.++.++++.+...+. .+. + .++ .+.++.||++++.++++++|+++|+.++++++| +.+.|
T Consensus 248 ~~s~~~~~~~~g~~~~-----~~~~~~~~~~~~~-~~~~~~kd~~~~~~~a~~~~~~~P~~~~~~~~~-------~~~~~ 314 (325)
T PRK00094 248 CTSPLSRNRRFGLALG-----QGKSLEEALAEIG-MVAEGVRTAKAVYELAKKLGVEMPITEAVYAVL-------YEGKD 314 (325)
T ss_pred ccCCCCccHHHHHHHH-----CCCCHHHHHHHcC-CEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------cCCCC
Confidence 4444444443221111 111 1 112 677889999999999999999999999999998 46777
Q ss_pred hhHHHHHHhh
Q psy764 275 FSYIYEFLKN 284 (286)
Q Consensus 275 ~~~~~~~~~~ 284 (286)
...+++.+.+
T Consensus 315 ~~~~~~~~~~ 324 (325)
T PRK00094 315 PREAVEDLMG 324 (325)
T ss_pred HHHHHHHHhc
Confidence 7777766543
|
|
| >PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=3e-27 Score=206.83 Aligned_cols=244 Identities=17% Similarity=0.263 Sum_probs=189.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc-cCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK-HAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~-~l~~g~i 80 (286)
||+++|.+|.++||+|++|||++. .++.++++++|+||+|+|+ .++++++.+ +.+ .+.++++
T Consensus 15 ~G~~lA~~l~~~G~~V~~~~r~~~-------------~~~~~~~~~advvi~~vp~-~~~~~v~~~---l~~~~~~~~~i 77 (308)
T PRK14619 15 WGSTLAGLASANGHRVRVWSRRSG-------------LSLAAVLADADVIVSAVSM-KGVRPVAEQ---VQALNLPPETI 77 (308)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCC-------------CCHHHHHhcCCEEEEECCh-HHHHHHHHH---HHHhcCCCCcE
Confidence 899999999999999999999864 5788999999999999997 588998864 555 3678899
Q ss_pred EEEcCC-CCchHHHHHHHHHHhcCCceEeccCC--CCHHhh-----hcCceEEEecCCHhhHHHHHHHHHHhcCCeEecC
Q psy764 81 VIDSST-VDPQVPQTLSNLAREKQITFLDAPVS--GGTKAA-----QEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 81 vid~st-~~p~~~~~~~~~~~~~g~~~~~~pv~--g~~~~a-----~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
||++|+ ..|.+.+.+.+.+..+ |.+.|+. ++|..+ ..+++++++|++.+.+++++++|+.++.++++.+
T Consensus 78 vi~~s~gi~~~~~~~~s~~~~~~---~~~~~v~~i~gp~~a~ei~~~~~~~~~~ag~~~~~~~~v~~ll~~~~~~~~~~~ 154 (308)
T PRK14619 78 IVTATKGLDPETTRTPSQIWQAA---FPNHPVVVLSGPNLSKEIQQGLPAATVVASRDLAAAETVQQIFSSERFRVYTNS 154 (308)
T ss_pred EEEeCCcccCCCCcCHHHHHHHH---cCCCceEEEECCCcHHHHhcCCCeEEEEEeCCHHHHHHHHHHhCCCcEEEEecC
Confidence 999987 6777666666655432 4456663 344333 3357789999999999999999999998888666
Q ss_pred C---cch--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCc
Q psy764 153 D---SGN--------------GQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGV 215 (286)
Q Consensus 153 ~---~g~--------------a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~ 215 (286)
+ ... +..+|+.+|.....++.++.|++.+++++|+++++++++ .+.+.++.. .+
T Consensus 155 d~~G~~~~~alkNv~ai~~G~~~~~~l~~N~~~a~~~~~~~E~~~l~~~~G~~~~t~~~~--~g~gd~~~t-----~~-- 225 (308)
T PRK14619 155 DPLGTELGGTLKNVIAIAAGVCDGLQLGTNAKAALVTRALPEMIRVGTHLGAQTETFYGL--SGLGDLLAT-----CT-- 225 (308)
T ss_pred CchhhhhHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHhCCCccccccc--cchhhhhee-----ec--
Confidence 5 233 344458999999999999999999999999999999885 244433331 11
Q ss_pred cccCCCCCCCCCCccchhH----------------HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHH
Q psy764 216 LSNVPASNNYNGGFKISLL----------------AKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIY 279 (286)
Q Consensus 216 ~~~~~~~~~~~~~f~~~~~----------------~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~ 279 (286)
.+.+++|.++|.+..+ .||++++.+++++.|+++|++.+++++|. ++.+...++
T Consensus 226 ---~~~~rn~~~g~~l~~g~~~~~~~~~~~~~~eG~~~~~~~~~~~~~~~~~~Pl~~~v~~i~~-------~~~~~~~~~ 295 (308)
T PRK14619 226 ---SPLSRNYQVGYGLAQGKSLEQILAELEGTAEGVNTANVLVQLAQQQNIAVPITEQVYRLLQ-------GEITPQQAL 295 (308)
T ss_pred ---CCCCccHHHHHHHHCCCCHHHHHHhcCCEeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHc-------CCCCHHHHH
Confidence 1236777777777766 99999999999999999999999999983 556666666
Q ss_pred HHHhh
Q psy764 280 EFLKN 284 (286)
Q Consensus 280 ~~~~~ 284 (286)
+.+.+
T Consensus 296 ~~l~~ 300 (308)
T PRK14619 296 EELME 300 (308)
T ss_pred HHHHc
Confidence 55543
|
|
| >PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.2e-25 Score=195.11 Aligned_cols=256 Identities=13% Similarity=0.127 Sum_probs=201.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH-----------HHcC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL-----------AKEG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+++|.+|+++||+|++|||++++.+.. .+.| +..+.++++++++||+||.|+|.
T Consensus 13 mG~~iA~~la~~G~~V~v~d~~~~~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~i~~~~~~~~a~~~ad~Vi~avpe 92 (308)
T PRK06129 13 IGRAWAIVFARAGHEVRLWDADPAAAAAAPAYIAGRLEDLAAFDLLDGEAPDAVLARIRVTDSLADAVADADYVQESAPE 92 (308)
T ss_pred HHHHHHHHHHHCCCeeEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCchhhHHHHhcCeEEECcHHHhhCCCCEEEECCcC
Confidence 89999999999999999999999876653 3344 25778899999999999999998
Q ss_pred hhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEec---CCHhhH
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG---GDKSSL 134 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g---g~~~~~ 134 (286)
+.+++..+.+ .++...++.+++. ||+++....++++.+...+..+.++|+.+.... .++.+++ ++++.+
T Consensus 93 ~~~~k~~~~~---~l~~~~~~~~ii~-ssts~~~~~~la~~~~~~~~~~~~hp~~p~~~~----~lveiv~~~~t~~~~~ 164 (308)
T PRK06129 93 NLELKRALFA---ELDALAPPHAILA-SSTSALLASAFTEHLAGRERCLVAHPINPPYLI----PVVEVVPAPWTAPATL 164 (308)
T ss_pred CHHHHHHHHH---HHHHhCCCcceEE-EeCCCCCHHHHHHhcCCcccEEEEecCCCcccC----ceEEEeCCCCCCHHHH
Confidence 7666666543 2333345566665 444556677888887767778889999863211 2567786 789999
Q ss_pred HHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCC
Q psy764 135 EKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPG 214 (286)
Q Consensus 135 ~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~ 214 (286)
++++++++.+|++++++++.+.|. ++||+ +...++|++.++++.|+|++++.++++.+.+.+|.+ +.| .
T Consensus 165 ~~~~~~~~~lG~~~v~v~~~~~G~---i~nrl----~~a~~~EA~~l~~~g~~~~~~id~~~~~~~g~~~~~--~gp--~ 233 (308)
T PRK06129 165 ARAEALYRAAGQSPVRLRREIDGF---VLNRL----QGALLREAFRLVADGVASVDDIDAVIRDGLGLRWSF--MGP--F 233 (308)
T ss_pred HHHHHHHHHcCCEEEEecCCCccH---HHHHH----HHHHHHHHHHHHHcCCCCHHHHHHHHHhccCCCccC--cCH--H
Confidence 999999999999999999767775 45554 346899999999999999999999999998888765 333 2
Q ss_pred ccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHH
Q psy764 215 VLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEF 281 (286)
Q Consensus 215 ~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~ 281 (286)
. ..+.|.++|...++.||..+..+++++.+.+.|++....+......+.-++..++..+.+.
T Consensus 234 ~-----~~d~~~~~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (308)
T PRK06129 234 E-----TIDLNAPGGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAW 295 (308)
T ss_pred H-----HHhccccccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 2 2455778899999999999999999999999998887777666666777888888877665
|
|
| >PRK12557 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase-related protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-25 Score=195.72 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=157.4
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch-----HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTD-----ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
|+++|.+|+++||+|++|||+++ +.+.+.+.|+.++.++.++++++|+||+|+|++.++++++. ++.+.+++
T Consensus 32 G~~MA~~La~aG~~V~v~Dr~~~~l~~~~~~~l~~~Gi~~asd~~eaa~~ADvVIlaVP~~~~v~~Vl~---~L~~~L~~ 108 (342)
T PRK12557 32 GSRMAIEFAEAGHDVVLAEPNRSILSEELWKKVEDAGVKVVSDDAEAAKHGEIHILFTPFGKKTVEIAK---NILPHLPE 108 (342)
T ss_pred HHHHHHHHHhCCCeEEEEECCHHHhhHHHHHHHHHCCCEEeCCHHHHHhCCCEEEEECCCcHHHHHHHH---HHHhhCCC
Confidence 88999999999999999999987 45567777998889999999999999999998766899986 48888899
Q ss_pred CCEEEEcCCCCchHH-HHHHHHHH----hcCCceE-eccCCCCHHhhhcCceEEEecC--------CHhhHHHHHHHHHH
Q psy764 78 GVIVIDSSTVDPQVP-QTLSNLAR----EKQITFL-DAPVSGGTKAAQEATLTFMVGG--------DKSSLEKAKPILKC 143 (286)
Q Consensus 78 g~ivid~st~~p~~~-~~~~~~~~----~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg--------~~~~~~~~~~ll~~ 143 (286)
+++|||+||++|... +.+.+.+. ..|+.+. ++++.|+ ..+.+.+++|| +++.+++++++|+.
T Consensus 109 g~IVId~ST~~~~~~s~~l~~~l~~~~~~~gi~~~~p~~v~Ga----e~g~l~Vm~gg~t~~~~~~~~e~~e~v~~LL~a 184 (342)
T PRK12557 109 NAVICNTCTVSPVVLYYSLEGELRTKRKDVGISSMHPAAVPGT----PQHGHYVIAGKTTNGTELATEEQIEKCVELAES 184 (342)
T ss_pred CCEEEEecCCCHHHHHHHHHHHhcccccccCeeecCCcccccc----ccchheEEeCCCcccccCCCHHHHHHHHHHHHH
Confidence 999999999999987 66666664 2355444 3444444 34445667765 88999999999999
Q ss_pred hcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 144 MGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 144 ~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
+|.++++++ .|.++.+|+++|++.+.++++.+|++.++++.|.++.++.+-+.
T Consensus 185 ~G~~v~~~~-~g~~~~vk~~~n~l~av~~a~~aE~~~l~~~~~~~p~~~~~~~~ 237 (342)
T PRK12557 185 IGKEPYVVP-ADVVSAVADMGSLVTAVALSGVLDYYSVGTKIIKAPKEMIEKQI 237 (342)
T ss_pred cCCEEEEeC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 999887777 59999999999999999999999999999999999988876544
|
|
| >COG0362 Gnd 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-25 Score=191.42 Aligned_cols=193 Identities=24% Similarity=0.330 Sum_probs=175.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----CCcccCCHHHHh---hcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----GANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~---~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..||.|+.++||+|.+|||+++|.+++.+. .+..+.|++|.+ +...-|+++|.....++.++++ +.+
T Consensus 14 MG~NLaLNi~~~G~~VavyNRt~~ktd~f~~~~~~~k~i~~~~sieefV~~Le~PRkI~lMVkAG~~VD~~I~~---L~p 90 (473)
T COG0362 14 MGSNLALNIADHGYTVAVYNRTTEKTDEFLAERAKGKNIVPAYSIEEFVASLEKPRKILLMVKAGTPVDAVIEQ---LLP 90 (473)
T ss_pred hhHHHHHHHHhcCceEEEEeCCHHHHHHHHHhCccCCCccccCcHHHHHHHhcCCceEEEEEecCCcHHHHHHH---HHh
Confidence 89999999999999999999999999999764 356777888876 4677899999987778999886 999
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcC------C
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGR------N 147 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~------~ 147 (286)
++.+|+++||-.+.....+.+..+.+.++|+.|+.+.|+|++.+|..|. ++|.||++++++.++|+|..++. .
T Consensus 91 ~Le~gDIiIDGGNs~y~DT~RR~~eL~~~Gi~FvG~GVSGGEeGA~~GP-SiMpGG~~eay~~v~pil~~IaAk~~g~pC 169 (473)
T COG0362 91 LLEKGDIIIDGGNSHYKDTIRRNKELSEKGILFVGMGVSGGEEGARHGP-SIMPGGQKEAYELVAPILTKIAAKVDGEPC 169 (473)
T ss_pred hcCCCCEEEeCCCcCCchHHHHHHHHHhcCCeEEeccccccccccccCC-CcCCCCCHHHHHHHHHHHHHHHhhcCCCCc
Confidence 9999999999998888777777888999999999999999999999999 89999999999999999999974 3
Q ss_pred eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHc
Q psy764 148 IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVINT 198 (286)
Q Consensus 148 v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~~~ 198 (286)
+.|+|+-|+|+.+|++||.+.|+-++.++|++.+.+. .|++.+++.+++..
T Consensus 170 c~~iG~~GAGHfVKmVHNGIEYgDMQlIaE~Y~ilk~~lgls~~ei~~vF~~ 221 (473)
T COG0362 170 CTWIGPDGAGHFVKMVHNGIEYGDMQLIAEAYDILKDGLGLSAEEIAEVFEE 221 (473)
T ss_pred eeeECCCCCCceeeeeecCchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5799999999999999999999999999999999997 89999999888764
|
|
| >PF14833 NAD_binding_11: NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase; PDB: 3OBB_A 3Q3C_A 2UYY_D 3G0O_A 1WP4_A 2CVZ_B 1YB4_A 3PDU_G 2I9P_D 2GF2_D | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-25 Score=167.52 Aligned_cols=122 Identities=35% Similarity=0.604 Sum_probs=110.3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhH
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLL 234 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 234 (286)
|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.||.++.+.| ..+.+++|.|+|+++.+
T Consensus 1 G~g~~~Kl~~N~l~~~~~~~~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~~------~~~~~~~~~~~f~l~~~ 74 (122)
T PF14833_consen 1 GAGQAMKLANNLLIAANMAALAEALALAEKAGLDPEQLLDVLSAGSGGSWMLKNRAP------RMILNGDFDPGFSLDLA 74 (122)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHTSTTHBHHHHHHHH------HHHHTTTTCSSSBHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHccCCcCchHHHhhhh------hhhhcccCCccchhHhh
Confidence 789999999999999999999999999999999999999999999999998876643 12347899999999999
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q psy764 235 AKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFL 282 (286)
Q Consensus 235 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 282 (286)
.||++++.+++++.|+|+|+.+.+.++|+.+.++|+|++|+++++++|
T Consensus 75 ~KDl~l~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~D~sai~~~~ 122 (122)
T PF14833_consen 75 RKDLRLALDLAKEAGVPLPLGSAARQLYQAAKAQGGGDEDFSAIYKLL 122 (122)
T ss_dssp HHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHTTTTTSBGGGGHHHH
T ss_pred ccHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcCCCCCCHHHHHhHC
Confidence 999999999999999999999999999999999999999999999986
|
... |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-22 Score=174.67 Aligned_cols=243 Identities=17% Similarity=0.182 Sum_probs=191.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-------------------C-CcccCCHHHHhhcCcEEEEecCChhH-
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-------------------G-ANMALSLSTLASGAEFIISMLPASQD- 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~adivi~~v~~~~~- 60 (286)
+|...+.+|++.||+|++.|.+++|++.+++. | .+++.+.+++++++|++|+|||+|..
T Consensus 11 VGLv~g~~lA~~GHeVv~vDid~~KV~~ln~g~~PI~EpgLe~ll~~~~~~gRl~fTtd~~~a~~~adv~fIavgTP~~~ 90 (414)
T COG1004 11 VGLVTGACLAELGHEVVCVDIDESKVELLNKGISPIYEPGLEELLKENLASGRLRFTTDYEEAVKDADVVFIAVGTPPDE 90 (414)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHhCCCCCCcCccHHHHHHhccccCcEEEEcCHHHHHhcCCEEEEEcCCCCCC
Confidence 68999999999999999999999999887651 1 57788999999999999999998853
Q ss_pred --------HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcC----CceEeccCCCCHHhhhcCce---EE
Q psy764 61 --------VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQ----ITFLDAPVSGGTKAAQEATL---TF 125 (286)
Q Consensus 61 --------~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g----~~~~~~pv~g~~~~a~~g~l---~~ 125 (286)
++.+.. .+.+.++..++||..||+.|.++.++.+.+.... +..+..|.|-.+..|....+ .+
T Consensus 91 dg~aDl~~V~ava~---~i~~~~~~~~vvV~KSTVPvGt~~~v~~~i~~~~~~~~f~v~~NPEFLREG~Av~D~~~PdRI 167 (414)
T COG1004 91 DGSADLSYVEAVAK---DIGEILDGKAVVVIKSTVPVGTTEEVRAKIREENSGKDFEVASNPEFLREGSAVYDFLYPDRI 167 (414)
T ss_pred CCCccHHHHHHHHH---HHHhhcCCCeEEEEcCCCCCCchHHHHHHHHhhcccCCceEecChHHhcCcchhhhccCCCeE
Confidence 455554 3777777779999999999999999988776654 34555565555444433222 57
Q ss_pred EecCCHh-hHHHHHHHHHHh---cCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 126 MVGGDKS-SLEKAKPILKCM---GRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 126 ~~gg~~~-~~~~~~~ll~~~---g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
++|.+.+ +.+..++++..+ ..++.+++ ...|+++|+.+|.+++.-+..++|.-.+|++.|+|.+++.+.++...
T Consensus 168 ViG~~~~~a~~~~~ely~~~~~~~~p~l~t~-~~~AE~IKyaaNafLAtKIsFiNEia~ice~~g~D~~~V~~gIGlD~- 245 (414)
T COG1004 168 VIGVRSERAAAVLRELYAPFLRQDVPILFTD-LREAELIKYAANAFLATKISFINEIANICEKVGADVKQVAEGIGLDP- 245 (414)
T ss_pred EEccCChhHHHHHHHHHhhhhhcCCCEEEec-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCc-
Confidence 8888654 577888888776 44455555 58999999999999999999999999999999999999999887541
Q ss_pred CcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q psy764 202 RCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKR 264 (286)
Q Consensus 202 ~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 264 (286)
.....+ + .. ..||...|+.||.+.++..++++|.+.++++++.++-++
T Consensus 246 --RIG~~f------l----~a---G~GyGGsCfPKD~~AL~~~a~~~~~~~~ll~avv~vN~~ 293 (414)
T COG1004 246 --RIGNHF------L----NA---GFGYGGSCFPKDTKALIANAEELGYDPNLLEAVVEVNER 293 (414)
T ss_pred --hhhHhh------C----CC---CCCCCCcCCcHhHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 111111 0 01 247778899999999999999999999999999887554
|
|
| >COG0240 GpsA Glycerol-3-phosphate dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=177.46 Aligned_cols=258 Identities=16% Similarity=0.177 Sum_probs=202.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------------CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------------GANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
.|++||..|+++||+|.+|.|+++-++++... ++.+++++.++++++|+|++++|+ +.+++++..
T Consensus 12 wGTALA~~la~ng~~V~lw~r~~~~~~~i~~~~~N~~yLp~i~lp~~l~at~Dl~~a~~~ad~iv~avPs-~~~r~v~~~ 90 (329)
T COG0240 12 WGTALAKVLARNGHEVRLWGRDEEIVAEINETRENPKYLPGILLPPNLKATTDLAEALDGADIIVIAVPS-QALREVLRQ 90 (329)
T ss_pred HHHHHHHHHHhcCCeeEEEecCHHHHHHHHhcCcCccccCCccCCcccccccCHHHHHhcCCEEEEECCh-HHHHHHHHH
Confidence 59999999999999999999999998888763 256788999999999999999995 799999985
Q ss_pred CccccccCCCCCEEEEcCCCC-chHHHHHHHHHHhc----CCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHH
Q psy764 68 SDGILKHAKPGVIVIDSSTVD-PQVPQTLSNLAREK----QITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILK 142 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~~-p~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~ 142 (286)
+.+.++++.++|.+|... +.+.+.+.+.+.+. .+.++++|.+..+......+.+.+.+-|.+..++++.+|.
T Consensus 91 ---l~~~l~~~~~iv~~sKGie~~t~~l~seii~e~l~~~~~~vLSGPs~A~EVa~g~pta~~vas~d~~~a~~v~~~f~ 167 (329)
T COG0240 91 ---LKPLLLKDAIIVSATKGLEPETGRLLSEIIEEELPDNPIAVLSGPSFAKEVAQGLPTAVVVASNDQEAAEKVQALFS 167 (329)
T ss_pred ---HhhhccCCCeEEEEeccccCCCcchHHHHHHHHcCCCeEEEEECccHHHHHhcCCCcEEEEecCCHHHHHHHHHHhC
Confidence 666788999999998654 54555555544433 3667888888877777788878888888998899999998
Q ss_pred HhcCCeEecCC---cchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc----CC
Q psy764 143 CMGRNIVHCGD---SGNGQVAK--------------LCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS----SG 201 (286)
Q Consensus 143 ~~g~~v~~~g~---~g~a~~~K--------------l~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~----~~ 201 (286)
+-..+++...+ +..+.++| +..|+..+.++.+++|+.+++..+|-++++++.+.+-+ ++
T Consensus 168 ~~~Frvy~~~Dv~GveigGAlKNViAIA~Gi~dGlg~G~NakaalitrGL~Em~rlg~~lG~~~~T~~gLsGlGDLilTC 247 (329)
T COG0240 168 SPYFRVYTSTDVIGVEIGGALKNVIAIAAGIADGLGLGDNAKAALITRGLAEMTRLGVALGAKPETFMGLSGLGDLILTC 247 (329)
T ss_pred CCcEEEEecCchhhhHHHHHHHHHHHHHHHHHHHhhcChhHHHHHHHhHHHHHHHHHHHhCCCcchhcccccccceeEec
Confidence 86665554443 34555555 78999999999999999999999999999998887665 78
Q ss_pred CcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q psy764 202 RCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYK 263 (286)
Q Consensus 202 ~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 263 (286)
+|..++|++.+..+.++......-.....+....+..+.+.++++++++++|+++++++++.
T Consensus 248 ts~~SRN~r~G~~lg~g~~~~e~l~~~g~vvEGv~t~k~v~~la~~~~i~mPI~~~Vy~vl~ 309 (329)
T COG0240 248 TSPLSRNRRFGLLLGQGLSLDEALEEIGQVVEGVRTAKAVYELAKKLGIEMPITEAVYRVLY 309 (329)
T ss_pred CCCccccHHHHHHHhCCCCHHHHHHhcCCeeecHHHHHHHHHHHHHcCCCCCHHHHHHHHHh
Confidence 88888887654333222111111112355778899999999999999999999999999875
|
|
| >PLN02688 pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-22 Score=171.74 Aligned_cols=238 Identities=13% Similarity=0.116 Sum_probs=176.5
Q ss_pred CccHHHHHHHHhCCC----cEEEE-cCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 1 MISTLKLFFLQFQGH----DVIVY-DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~----~V~~~-dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+||.+++++|.++|| +|++| ||++++.+.+.+.|+..+.++.++++++|+||+|+| ++++++++.+ +.+.+
T Consensus 10 ~mG~a~a~~L~~~g~~~~~~i~v~~~r~~~~~~~~~~~g~~~~~~~~e~~~~aDvVil~v~-~~~~~~vl~~---l~~~~ 85 (266)
T PLN02688 10 KMAEAIARGLVASGVVPPSRISTADDSNPARRDVFQSLGVKTAASNTEVVKSSDVIILAVK-PQVVKDVLTE---LRPLL 85 (266)
T ss_pred HHHHHHHHHHHHCCCCCcceEEEEeCCCHHHHHHHHHcCCEEeCChHHHHhcCCEEEEEEC-cHHHHHHHHH---HHhhc
Confidence 389999999999998 89999 999999998888899999999999999999999997 6789999874 77777
Q ss_pred CCCCEEEEcCC-CCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCC
Q psy764 76 KPGVIVIDSST-VDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 76 ~~g~ivid~st-~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
.++++||++++ +.... +.+..... .++ .+|..+.........++...+++++.+++++++|+.+|. ++++++
T Consensus 86 ~~~~~iIs~~~g~~~~~---l~~~~~~~--~vvr~mP~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~~G~-~~~~~e 159 (266)
T PLN02688 86 SKDKLLVSVAAGITLAD---LQEWAGGR--RVVRVMPNTPCLVGEAASVMSLGPAATADDRDLVATLFGAVGK-IWVVDE 159 (266)
T ss_pred CCCCEEEEecCCCcHHH---HHHHcCCC--CEEEECCCcHHHHhCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeCH
Confidence 88998887643 33332 23333221 566 467665544433333333334478899999999999999 888743
Q ss_pred ---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCccccccc-CCCCCccccCCCCC
Q psy764 154 ---------SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVY-NPVPGVLSNVPASN 223 (286)
Q Consensus 154 ---------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~ 223 (286)
.|++.++ .+.++.++.|+ +.+.|+|++++.+++..+..+++..-.. ...|. .+.+.
T Consensus 160 ~~~d~~~~~~g~g~a~-------~~~~~~a~~ea---~~~~Gl~~~~a~~~~~~~~~gs~~l~~~~~~~~~----~l~~~ 225 (266)
T PLN02688 160 KLLDAVTGLSGSGPAY-------IFLAIEALADG---GVAAGLPRDVALSLAAQTVLGAAKMVLETGKHPG----QLKDM 225 (266)
T ss_pred HHcchhHhhhcCHHHH-------HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHh
Confidence 5666664 77888899999 9999999999999999886666643111 11111 11133
Q ss_pred CCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 224 NYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 224 ~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
.-+|+.++.. .++..++.|++-.+.+++.+.++++.+.+
T Consensus 226 v~spgG~t~~-------~l~~l~~~g~~~~~~~a~~~~~~r~~~~~ 264 (266)
T PLN02688 226 VTSPGGTTIA-------GVHELEKGGFRAALMNAVVAAAKRSRELS 264 (266)
T ss_pred CCCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 3356555554 67788889999999999999999998865
|
|
| >COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-21 Score=169.26 Aligned_cols=244 Identities=17% Similarity=0.161 Sum_probs=179.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-------------------C-CcccCCHHHHhhcCcEEEEecCChhH-
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-------------------G-ANMALSLSTLASGAEFIISMLPASQD- 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------------------g-~~~~~s~~e~~~~adivi~~v~~~~~- 60 (286)
||.++|..++++|++|.++|.++.+++.+++. | .+.+.++.++. .||++|+|||+|-.
T Consensus 20 VGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln~G~~~i~e~~~~~~v~~~v~~g~lraTtd~~~l~-~~dv~iI~VPTPl~~ 98 (436)
T COG0677 20 VGLPLAAAFASAGFKVIGVDINQKKVDKLNRGESYIEEPDLDEVVKEAVESGKLRATTDPEELK-ECDVFIICVPTPLKK 98 (436)
T ss_pred ccHHHHHHHHHcCCceEeEeCCHHHHHHHhCCcceeecCcHHHHHHHHHhcCCceEecChhhcc-cCCEEEEEecCCcCC
Confidence 89999999999999999999999988877642 1 45666666664 89999999998742
Q ss_pred -----HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc--CCce------Eecc--CC-CCHHhhhcCceE
Q psy764 61 -----VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--QITF------LDAP--VS-GGTKAAQEATLT 124 (286)
Q Consensus 61 -----~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~--g~~~------~~~p--v~-g~~~~a~~g~l~ 124 (286)
+.-|....+.+.+.|++|++||--||+.|.+++++...+.+. |..+ .-+| +. |...........
T Consensus 99 ~~~pDls~v~~aa~sIa~~L~kG~LVIlEST~~PGTTe~v~~plle~~sgL~~~~Df~laysPERv~PG~~~~el~~~~k 178 (436)
T COG0677 99 YREPDLSYVESAARSIAPVLKKGDLVILESTTPPGTTEEVVKPLLEERSGLKFGEDFYLAYSPERVLPGNVLKELVNNPK 178 (436)
T ss_pred CCCCChHHHHHHHHHHHHhcCCCCEEEEecCCCCCcHHHHHHHHHhhcCCCcccceeeEeeCccccCCCchhhhhhcCCc
Confidence 333333334588899999999999999999999999988774 3332 1233 22 211111122223
Q ss_pred EEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcc
Q psy764 125 FMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCW 204 (286)
Q Consensus 125 ~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~ 204 (286)
++-|-++...+.+..+++.+-..++.+.+.-.|++.|+..|.+...++++.+|...+|.++|+|...++++.++-+ |
T Consensus 179 VIgG~tp~~~e~a~~lY~~iv~~~~~vts~~tAEm~Kl~EN~fRdVNIALaNElali~~~~GIdvwevIeaAnt~P---~ 255 (436)
T COG0677 179 VIGGVTPKCAELAAALYKTIVEGVIPVTSARTAEMVKLTENTFRDVNIALANELALICNAMGIDVWEVIEAANTKP---R 255 (436)
T ss_pred eeecCCHHHHHHHHHHHHHheEEEEEcCChHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhCCcHHHHHHHhccCC---c
Confidence 4444467888899999999987788888889999999999999999999999999999999999999999988652 3
Q ss_pred cccccCCCCCccccCCCCCCCCCCccchhHHH--HHHHHHHHHhhcCCCch
Q psy764 205 SSEVYNPVPGVLSNVPASNNYNGGFKISLLAK--DMKLAEDLANRCTAQTD 253 (286)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~k--d~~~~~~~a~~~g~~~p 253 (286)
+..+.|+|+...+++.- +|.|-+....+ .-.-++++|++.+-.||
T Consensus 256 -~~~~~PGpGvGGHCIpv---DP~fl~~ka~~yg~~~rlI~tAreIN~~mP 302 (436)
T COG0677 256 -VNIFYPGPGVGGHCIPV---DPYFLTWKAPEYGLPARLIRTAREINDSMP 302 (436)
T ss_pred -eeecCCCCCCCCccccc---CchheeecccccCCchHHHHHHHHHhccCC
Confidence 55677888877665432 23342222211 12235677777766665
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.4e-21 Score=175.27 Aligned_cols=242 Identities=14% Similarity=0.150 Sum_probs=187.1
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHHcC-------------------CcccCCHHHHhhcCcEEEEecCChh-
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAKEG-------------------ANMALSLSTLASGAEFIISMLPASQ- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g-------------------~~~~~s~~e~~~~adivi~~v~~~~- 59 (286)
||.++|..|+++| |+|++||+++++++.+++.+ ...+++..+++++||++|+|||+|.
T Consensus 12 vGl~~A~~lA~~g~g~~V~gvD~~~~~v~~l~~g~~~~~e~gl~ell~~~~~~~l~~t~~~~~~i~~advi~I~V~TP~~ 91 (473)
T PLN02353 12 VGGPTMAVIALKCPDIEVVVVDISVPRIDAWNSDQLPIYEPGLDEVVKQCRGKNLFFSTDVEKHVAEADIVFVSVNTPTK 91 (473)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHcCCCccCCCCHHHHHHHhhcCCEEEEcCHHHHHhcCCEEEEEeCCCCC
Confidence 7999999999885 78999999999998875422 3455677888999999999998775
Q ss_pred -------------HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc--C--CceEeccCCCCHHhhhcC-
Q psy764 60 -------------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--Q--ITFLDAPVSGGTKAAQEA- 121 (286)
Q Consensus 60 -------------~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~--g--~~~~~~pv~g~~~~a~~g- 121 (286)
.++++... +.+.++++++||..||+.|.+++++...+.+. | +.+..+|.+-.+..+...
T Consensus 92 ~~g~~~~~~~Dls~v~~a~~~---i~~~l~~~~lVv~~STvp~Gtt~~~~~~l~~~~~g~~f~v~~~PErl~~G~a~~d~ 168 (473)
T PLN02353 92 TRGLGAGKAADLTYWESAARM---IADVSKSDKIVVEKSTVPVKTAEAIEKILTHNSKGINFQILSNPEFLAEGTAIEDL 168 (473)
T ss_pred CCCCcCCCCCcHHHHHHHHHH---HHhhCCCCcEEEEeCCCCCChHHHHHHHHHhhCCCCCeEEEECCCccCCCCccccc
Confidence 34555553 77888999999999999999999998887764 3 346677877655554332
Q ss_pred --ceEEEecCC-----HhhHHHHHHHHHHhcC-CeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q psy764 122 --TLTFMVGGD-----KSSLEKAKPILKCMGR-NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193 (286)
Q Consensus 122 --~l~~~~gg~-----~~~~~~~~~ll~~~g~-~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~ 193 (286)
.-.+++||. +++.++++.+++.+.. .++.+.++..|++.|++.|.+.+.+++.++|...+|++.|+|..++.
T Consensus 169 ~~p~riViG~~~~~~~~~a~~~~~~lY~~~~~~~~i~~~s~~~AE~~K~~eN~~ra~~Iaf~NEla~lce~~giD~~eV~ 248 (473)
T PLN02353 169 FKPDRVLIGGRETPEGQKAVQALKDVYAHWVPEERIITTNLWSAELSKLAANAFLAQRISSVNAMSALCEATGADVSQVS 248 (473)
T ss_pred CCCCEEEEccCCchhhHHHHHHHHHHHHHhhcCCCEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 124667874 2357888999998853 45566677999999999999999999999999999999999999999
Q ss_pred HHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCC--chHHHHHHHHH
Q psy764 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQ--TDLSKLATSIY 262 (286)
Q Consensus 194 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~ 262 (286)
+.++..+--++. ...| .+||...|+.||...+...+++.|.+ .++.+++.++-
T Consensus 249 ~~~~~d~rig~~--~l~P--------------G~G~GG~ClpkD~~~L~~~a~~~g~~~~~~l~~~~~~iN 303 (473)
T PLN02353 249 HAVGKDSRIGPK--FLNA--------------SVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKMN 303 (473)
T ss_pred HHhCCCCcCCCC--CCCC--------------CCCCCCcchhhhHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 988754210010 0112 24566789999999999999999998 77887776543
|
|
| >KOG2653|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.2e-22 Score=170.35 Aligned_cols=193 Identities=22% Similarity=0.316 Sum_probs=174.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc---C--CcccCCHHHHh---hcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE---G--ANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~---g--~~~~~s~~e~~---~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..|+.|.+.+||.|.+|||+.+|++++.+. | +..+.|++|.+ +...+|++.|+....+...+++ +.+
T Consensus 17 MGqnLiLN~~d~Gf~v~~yNRT~skvD~flaneak~~~i~ga~S~ed~v~klk~PR~iillvkAG~pVD~~I~~---L~p 93 (487)
T KOG2653|consen 17 MGQNLILNIADKGFTVCAYNRTTSKVDEFLANEAKGTKIIGAYSLEDFVSKLKKPRVIILLVKAGAPVDQFIEE---LVP 93 (487)
T ss_pred hhhhhhhcccccCceEEEeccchHhHHHHHHHhhcCCcccCCCCHHHHHHhcCCCcEEEEEeeCCCcHHHHHHH---HHh
Confidence 89999999999999999999999999988643 3 45567899987 4678999999998899999985 999
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCC------
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN------ 147 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~------ 147 (286)
++.+|++|||-.+.....+.+..+++.++|+-|+.+.|+|++.+|..|. ++|.||+.+++..++++|..+..+
T Consensus 94 ~LekgDiIIDGGNs~y~dT~RR~~el~k~GilfvG~GVSGGEEGAR~GP-SlMpGg~~~Awp~ik~ifq~iaakv~~~ep 172 (487)
T KOG2653|consen 94 YLEKGDIIIDGGNSEYQDTERRCRELAKKGILFVGSGVSGGEEGARYGP-SLMPGGSKEAWPHIKDIFQKIAAKVSDGEP 172 (487)
T ss_pred hcCCCCEEEeCCcccCcchHHHHHHHHhcCcEEEecCccCcccccccCC-ccCCCCChHHHHHHHHHHHHHHHHhcCCCC
Confidence 9999999999988887777777788899999999999999999999999 899999999999999999998643
Q ss_pred -eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHc
Q psy764 148 -IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVINT 198 (286)
Q Consensus 148 -v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~~~ 198 (286)
+.++|+-|+|+.+||++|.+.++-++.++|++.+.++ .|++.+++.+++..
T Consensus 173 Cc~wvG~~GaGhfVKMVHNGIEYGDMqLI~EaY~vlk~~~gls~~eia~vF~~ 225 (487)
T KOG2653|consen 173 CCDWVGEGGAGHFVKMVHNGIEYGDMQLICEAYDVLKSVLGLSNDEIAEVFDD 225 (487)
T ss_pred CeeeecCCCCccchhhhccCcccchHHHHHHHHHHHHHhcCCcHHHHHHHHHh
Confidence 4789999999999999999999999999999999999 89999999988864
|
|
| >PRK07679 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.9e-22 Score=171.13 Aligned_cols=233 Identities=17% Similarity=0.190 Sum_probs=172.8
Q ss_pred ccHHHHHHHHhCC----CcEEEEcCCch-HHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQG----HDVIVYDKNTD-ASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G----~~V~~~dr~~~-~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||++++++|.++| ++|++|||+++ +.+.+... |+..+.++.++++++|+||+||| |+++.+++.+ +.+.+
T Consensus 14 mG~aia~~l~~~g~~~~~~v~v~~r~~~~~~~~l~~~~g~~~~~~~~e~~~~aDvVilav~-p~~~~~vl~~---l~~~~ 89 (279)
T PRK07679 14 IAEAIIGGLLHANVVKGEQITVSNRSNETRLQELHQKYGVKGTHNKKELLTDANILFLAMK-PKDVAEALIP---FKEYI 89 (279)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCCHHHHHHHHHhcCceEeCCHHHHHhcCCEEEEEeC-HHHHHHHHHH---HHhhc
Confidence 8999999999998 78999999864 66777654 88888899999999999999999 4678888763 77777
Q ss_pred CCCCEEEEc-CCCCchHHHHHHHHHHhcCCceEeccCCCC---HHhhhcCceEEEecCC---HhhHHHHHHHHHHhcCCe
Q psy764 76 KPGVIVIDS-STVDPQVPQTLSNLAREKQITFLDAPVSGG---TKAAQEATLTFMVGGD---KSSLEKAKPILKCMGRNI 148 (286)
Q Consensus 76 ~~g~ivid~-st~~p~~~~~~~~~~~~~g~~~~~~pv~g~---~~~a~~g~l~~~~gg~---~~~~~~~~~ll~~~g~~v 148 (286)
.++++||++ +++++.+.+++. ..+ +|+.+. .+.+..+.++++++++ ++.++.++++|+.+|..+
T Consensus 90 ~~~~liIs~~aGi~~~~l~~~~----~~~-----~~v~r~mPn~~~~~~~~~t~~~~~~~~~~~~~~~v~~l~~~~G~~~ 160 (279)
T PRK07679 90 HNNQLIISLLAGVSTHSIRNLL----QKD-----VPIIRAMPNTSAAILKSATAISPSKHATAEHIQTAKALFETIGLVS 160 (279)
T ss_pred CCCCEEEEECCCCCHHHHHHHc----CCC-----CeEEEECCCHHHHHhcccEEEeeCCCCCHHHHHHHHHHHHhCCcEE
Confidence 788999996 788777666532 222 233333 3455556667888876 568899999999999866
Q ss_pred E------e--cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCc-ccccccCCCCCccccC
Q psy764 149 V------H--CGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRC-WSSEVYNPVPGVLSNV 219 (286)
Q Consensus 149 ~------~--~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~ 219 (286)
+ + ++..|+|.++ ++.++.++.|+ +++.|+|++++.+++..+..++ .........|..
T Consensus 161 ~v~e~~~~~~~a~~Gsgpa~-------~~~~~eal~e~---~~~~Gl~~~~a~~~~~~~~~gsa~~~~~~~~~~~~---- 226 (279)
T PRK07679 161 VVEEEDMHAVTALSGSGPAY-------IYYVVEAMEKA---AKKIGLKEDVAKSLILQTMIGAAEMLKASEKHPSI---- 226 (279)
T ss_pred EeCHHHhhhHHHhhcCHHHH-------HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----
Confidence 5 5 5666777764 56666666666 8999999999999998854333 322211111122
Q ss_pred CCCCCC-CCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 220 PASNNY-NGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 220 ~~~~~~-~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
..+++ +|+|++.. .++..++.|+.--+.+++.+.++++.+.|
T Consensus 227 -l~~~v~spgg~t~~-------gl~~l~~~~~~~~i~~a~~~a~~r~~~l~ 269 (279)
T PRK07679 227 -LRKEITSPGGTTEA-------GIEVLQEHRFQQALISCITQATQRSHNLG 269 (279)
T ss_pred -HHHhcCCCchHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 24555 78887776 56666778999999999999999998865
|
|
| >PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated | Back alignment and domain information |
|---|
Probab=99.85 E-value=4e-20 Score=171.28 Aligned_cols=189 Identities=25% Similarity=0.285 Sum_probs=153.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-------------------cC-CcccCCHHHHhhcCcEEEEecCChhH
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-------------------EG-ANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
.||+++|.+|+++||+|++||+++++.+.+.+ .| +..++++++++++||+||.|+|...+
T Consensus 14 ~MG~~iA~~la~~G~~V~v~D~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~i~~~~~~~ea~~~aD~Vieavpe~~~ 93 (495)
T PRK07531 14 VIGGGWAARFLLAGIDVAVFDPHPEAERIIGEVLANAERAYAMLTDAPLPPEGRLTFCASLAEAVAGADWIQESVPERLD 93 (495)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHhhhccchhhhhhceEeeCCHHHHhcCCCEEEEcCcCCHH
Confidence 38999999999999999999999998765422 13 67788999999999999999999887
Q ss_pred HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCC---HhhHHHH
Q psy764 61 VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGD---KSSLEKA 137 (286)
Q Consensus 61 ~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~---~~~~~~~ 137 (286)
++..+.+ .+.+.++++ .||++||..+..+ ++.+.+...+..++++|+... ..+.++.+++|+ ++.++++
T Consensus 94 vk~~l~~--~l~~~~~~~-~iI~SsTsgi~~s-~l~~~~~~~~r~~~~hP~nP~----~~~~Lvevv~g~~t~~e~~~~~ 165 (495)
T PRK07531 94 LKRRVLA--EIDAAARPD-ALIGSSTSGFLPS-DLQEGMTHPERLFVAHPYNPV----YLLPLVELVGGGKTSPETIRRA 165 (495)
T ss_pred HHHHHHH--HHHhhCCCC-cEEEEcCCCCCHH-HHHhhcCCcceEEEEecCCCc----ccCceEEEcCCCCCCHHHHHHH
Confidence 7876543 254445444 5778888877644 666777677778999997732 234678899987 7899999
Q ss_pred HHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCHHHHHHHHHccCCCccc
Q psy764 138 KPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMG-VAEAMNLGVKLGMNAKLLSDVINTSSGRCWS 205 (286)
Q Consensus 138 ~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~-~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~ 205 (286)
+++++.+|+++++++ |.++|++..-+..+ +.|++.++++.|++++++.++++.+.+.+|.
T Consensus 166 ~~~~~~lG~~~v~~~--------k~~~gfi~nrl~~a~~~EA~~L~~~g~~s~~~id~~~~~g~g~~~~ 226 (495)
T PRK07531 166 KEILREIGMKPVHIA--------KEIDAFVGDRLLEALWREALWLVKDGIATTEEIDDVIRYSFGLRWA 226 (495)
T ss_pred HHHHHHcCCEEEeec--------CCCcchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhccCCCcc
Confidence 999999999999987 46777777777777 4999999999999999999999998887775
|
|
| >PRK08229 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-19 Score=161.57 Aligned_cols=249 Identities=18% Similarity=0.139 Sum_probs=173.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-----------------cCCHHHHhhcCcEEEEecCChhHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-----------------ALSLSTLASGAEFIISMLPASQDVLDA 64 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------------~~s~~e~~~~adivi~~v~~~~~~~~v 64 (286)
||+.+|..|+++||+|++|||++. .+.+.+.|... ..+. +.+..+|+||+|+|++ +..++
T Consensus 13 mG~~~A~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~D~vil~vk~~-~~~~~ 89 (341)
T PRK08229 13 IGCYLGGRLAAAGADVTLIGRARI-GDELRAHGLTLTDYRGRDVRVPPSAIAFSTDP-AALATADLVLVTVKSA-ATADA 89 (341)
T ss_pred HHHHHHHHHHhcCCcEEEEecHHH-HHHHHhcCceeecCCCcceecccceeEeccCh-hhccCCCEEEEEecCc-chHHH
Confidence 899999999999999999999754 46666555432 3344 5678999999999975 56777
Q ss_pred hcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEec--c---CCCCHHhh---hcCceEEEecCCHhhHHH
Q psy764 65 YDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA--P---VSGGTKAA---QEATLTFMVGGDKSSLEK 136 (286)
Q Consensus 65 ~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~--p---v~g~~~~a---~~g~l~~~~gg~~~~~~~ 136 (286)
+.. +.+.+.++++|+++++. ....+.+.+.+.+ ..++++ | +..+|... ..|.+.+. +.+.+++
T Consensus 90 ~~~---l~~~~~~~~iii~~~nG-~~~~~~l~~~~~~--~~~~~g~~~~~~~~~~pg~~~~~~~g~l~~~---~~~~~~~ 160 (341)
T PRK08229 90 AAA---LAGHARPGAVVVSFQNG-VRNADVLRAALPG--ATVLAGMVPFNVISRGPGAFHQGTSGALAIE---ASPALRP 160 (341)
T ss_pred HHH---HHhhCCCCCEEEEeCCC-CCcHHHHHHhCCC--CcEEEEEEEEEEEecCCceEEecCCCceEec---CCchHHH
Confidence 764 77777888999988653 3344555555543 234444 2 23333333 24554332 3355789
Q ss_pred HHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHcCCCHHHHHHHH
Q psy764 137 AKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVT--------------------MMGVAEAMNLGVKLGMNAKLLSDVI 196 (286)
Q Consensus 137 ~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~--------------------~~~~~Ea~~l~~~~Gl~~~~~~~~~ 196 (286)
+.++|+..+.++.+.++++.+...|++.|.+.... ..++.|++.++++.|++++.+..+.
T Consensus 161 ~~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~~~~al~~~~~~~l~~~~~~~~~~~~~~~E~~~va~a~Gi~~~~~~~~~ 240 (341)
T PRK08229 161 FAAAFARAGLPLVTHEDMRAVQWAKLLLNLNNAVNALSGLPLKEELAQRSYRRCLALAQREALRVLKAAGIRPARLTPLP 240 (341)
T ss_pred HHHHHHhcCCCceecchhHHHHHHHHHHHhccHHHHHhCCchHHHhcCchHHHHHHHHHHHHHHHHHHcCCCccccCCCC
Confidence 99999999999999999999999999999744433 3789999999999999987654433
Q ss_pred HccC-----CCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHH------------HHHHHHhhcCCCchHHHHHH
Q psy764 197 NTSS-----GRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMK------------LAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 197 ~~~~-----~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~------------~~~~~a~~~g~~~p~~~~~~ 259 (286)
.++. ..++..+...+ .+...++.. ...+.||+. ++.+.++++|+++|..+.++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~---~~Sm~~D~~~~r~tEi~~i~G~i~~~a~~~gv~~P~~~~~~ 310 (341)
T PRK08229 241 PAWIPRLLRLPDPLFRRLAG-------RMLAIDPLA---RSSMSDDLAAGRATEIDWINGEIVRLAGRLGAPAPVNARLC 310 (341)
T ss_pred hhhhhhhhcCChHHHHHHHH-------HhhccCCcc---CchHHHHHHcCCcchHHHHhhHHHHHHHHcCCCCcHHHHHH
Confidence 3221 11111111100 111222221 346899999 79999999999999999999
Q ss_pred HHHHHHHHcCCCC
Q psy764 260 SIYKRLMDKGCQD 272 (286)
Q Consensus 260 ~~~~~a~~~g~g~ 272 (286)
++++.+.+.|...
T Consensus 311 ~~~~~~~~~~~~~ 323 (341)
T PRK08229 311 ALVHEAERAGARP 323 (341)
T ss_pred HHHHHHHhCCCcC
Confidence 9999998877544
|
|
| >PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-19 Score=155.55 Aligned_cols=268 Identities=11% Similarity=-0.014 Sum_probs=190.8
Q ss_pred ccHHHHHHHHhCC-------CcEEEEcCCch-----HHHHHHHc--------------CCcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQG-------HDVIVYDKNTD-----ASQTLAKE--------------GANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G-------~~V~~~dr~~~-----~~~~l~~~--------------g~~~~~s~~e~~~~adivi~~v 55 (286)
+|+++|..|.++| |+|.+|.|+++ .++.+.+. ++..++++.++++++|+||++|
T Consensus 22 wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~N~~ylp~~~Lp~ni~~tsdl~eav~~aDiIvlAV 101 (365)
T PTZ00345 22 WGSAISKVVGENTQRNYIFHNEVRMWVLEEIVEGEKLSDIINTKHENVKYLPGIKLPDNIVAVSDLKEAVEDADLLIFVI 101 (365)
T ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEEecccccchHHHHHHHhcCCCcccCCCCcCCCceEEecCHHHHHhcCCEEEEEc
Confidence 6999999999998 89999999986 36666543 2455788899999999999999
Q ss_pred CChhHHHHHhcCCccccc--cCCCCCEEEEcCCCCc-hH------HHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEE
Q psy764 56 PASQDVLDAYDGSDGILK--HAKPGVIVIDSSTVDP-QV------PQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFM 126 (286)
Q Consensus 56 ~~~~~~~~v~~~~~~l~~--~l~~g~ivid~st~~p-~~------~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~ 126 (286)
| ++.+++++.. +.+ .+.++.++|.++.... .+ ++-+.+.+ ...+.++.+|.+..+......+..++
T Consensus 102 P-sq~l~~vl~~---l~~~~~l~~~~~iIS~aKGIe~~t~~~~~~sevi~e~l-~~~~~~LsGPs~A~Eva~~~pt~~vi 176 (365)
T PTZ00345 102 P-HQFLESVLSQ---IKENNNLKKHARAISLTKGIIVENGKPVLCSDVIEEEL-GIPCCALSGANVANDVAREEFSEATI 176 (365)
T ss_pred C-hHHHHHHHHH---hccccccCCCCEEEEEeCCcccCCCCcccHHHHHHHHh-CCCeEEEECCCHHHHHHcCCCcEEEE
Confidence 9 5899999986 666 6667778888775432 22 22223333 23455677787777777777887888
Q ss_pred ecCCHhhHHHHHHHHHHhcCCeEecCC---cchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHcC--C
Q psy764 127 VGGDKSSLEKAKPILKCMGRNIVHCGD---SGNGQVAK--------------LCNNMLLGVTMMGVAEAMNLGVKLG--M 187 (286)
Q Consensus 127 ~gg~~~~~~~~~~ll~~~g~~v~~~g~---~g~a~~~K--------------l~~n~~~~~~~~~~~Ea~~l~~~~G--l 187 (286)
++-|.+..+.++.+|+.-..+++...+ +.-+.++| +..|+..+.+..++.|+.++++++| .
T Consensus 177 as~~~~~a~~~~~lf~~~~frvy~s~Dv~GvEl~galKNviAIa~Gi~dGl~~G~N~kaalitrgl~Em~~l~~a~g~~~ 256 (365)
T PTZ00345 177 GCEDKDDALIWQRLFDRPYFKINCVPDVIGVEVCGALKNIIALAAGFCDGLGLGTNTKSAIIRIGLEEMKLFGKIFFPNV 256 (365)
T ss_pred EeCCHHHHHHHHHHhCCCcEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 888888888999999876666655444 23466666 7799999999999999999999996 5
Q ss_pred CHHHHHHHHHcc----CCCcccccccCCCCCcccc---CCCCCCCCC--CccchhHHHHHHHHHHHHhhcCC--CchHHH
Q psy764 188 NAKLLSDVINTS----SGRCWSSEVYNPVPGVLSN---VPASNNYNG--GFKISLLAKDMKLAEDLANRCTA--QTDLSK 256 (286)
Q Consensus 188 ~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~---~~~~~~~~~--~f~~~~~~kd~~~~~~~a~~~g~--~~p~~~ 256 (286)
++++++++..-+ ++.| ++|+..+..+... .....-... ...+..+....+.+.++++++++ ++|+++
T Consensus 257 ~~~T~~glaG~GDLi~Tc~s--SRN~~~G~~l~~g~~~~~~~~~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~~~Pi~~ 334 (365)
T PTZ00345 257 MDETFFESCGLADLITTCLG--GRNVRCAAEFAKRNGKKSWEEIEAELLNGQKLQGTVTLKEVYEVLESHDLKKEFPLFT 334 (365)
T ss_pred CccchhccchHhHhhhcccC--CCcHHHHHHHhccCCCCCHHHHHHHhhCCcEechHHHHHHHHHHHHHcCCCCCCCHHH
Confidence 899998876655 4555 6665433222210 000000000 02345677888899999999999 899999
Q ss_pred HHHHHHHHHHHcCCCCCchhHHHHHHh
Q psy764 257 LATSIYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 257 ~~~~~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
++++++. ++.+...+++.+.
T Consensus 335 ~vy~il~-------~~~~~~~~~~~l~ 354 (365)
T PTZ00345 335 VTYKIAF-------EGADPSSLIDVLS 354 (365)
T ss_pred HHHHHHh-------CCCCHHHHHHHHH
Confidence 9999873 4455555555543
|
|
| >PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.8e-19 Score=156.46 Aligned_cols=270 Identities=12% Similarity=0.118 Sum_probs=186.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC---------------CcccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG---------------ANMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g---------------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
||+++|..|+++| +|.+|.|+++..+.+++.+ +...+++.++++++|+||+|+| ++.+++++.
T Consensus 18 ~G~alA~~La~~g-~v~l~~~~~~~~~~i~~~~~~~~~l~~~~~l~~~i~~t~d~~~a~~~aDlVilavp-s~~~~~vl~ 95 (341)
T PRK12439 18 WGTTVASICARRG-PTLQWVRSAETADDINDNHRNSRYLGNDVVLSDTLRATTDFAEAANCADVVVMGVP-SHGFRGVLT 95 (341)
T ss_pred HHHHHHHHHHHCC-CEEEEeCCHHHHHHHHhcCCCcccCCCCcccCCCeEEECCHHHHHhcCCEEEEEeC-HHHHHHHHH
Confidence 7999999999999 6899999999888887542 2345678888999999999999 578999998
Q ss_pred CCccccccCCCCCEEEEcCCCCch-HH----HHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHH
Q psy764 67 GSDGILKHAKPGVIVIDSSTVDPQ-VP----QTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPIL 141 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~st~~p~-~~----~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll 141 (286)
. +.+.+.+++++|.++..... +. +.+.+.+......++..|.+.........+..++.+.+++..+.++++|
T Consensus 96 ~---i~~~l~~~~~vIsl~kGi~~~t~~~~se~i~~~l~~~~~~~l~GP~~a~ev~~g~~t~~via~~~~~~~~~v~~lf 172 (341)
T PRK12439 96 E---LAKELRPWVPVVSLVKGLEQGTNMRMSQIIEEVLPGHPAGILAGPNIAREVAEGYAAAAVLAMPDQHLATRLSPLF 172 (341)
T ss_pred H---HHhhcCCCCEEEEEEeCCcCCCCCcHHHHHHHHcCCCCeEEEECCCHHHHHHcCCCeEEEEEeCCHHHHHHHHHHh
Confidence 5 77778788888877765443 22 2233333222233555664444333333444455566777778899999
Q ss_pred HHhcCCeEecCCc---chHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc----C
Q psy764 142 KCMGRNIVHCGDS---GNGQV--------------AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS----S 200 (286)
Q Consensus 142 ~~~g~~v~~~g~~---g~a~~--------------~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~----~ 200 (286)
+.-+.+++...++ .-+.+ +++..|.....+..++.|+.++++++|.++++++++..-+ +
T Consensus 173 ~~~~~~v~~s~Di~gve~~~alkNv~aia~G~~~g~~~g~n~~aali~~~~~E~~~~~~a~G~~~~t~~gl~G~GDl~~T 252 (341)
T PRK12439 173 RTRRFRVYTTDDVVGVEMAGALKNVFAIAVGMGYSLGIGENTRAMVIARALREMTKLGVAMGGNPETFAGLAGMGDLIVT 252 (341)
T ss_pred CCCCEEEEEcCchHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHhCCCcccccccchhhhhhhh
Confidence 8877666555542 12222 3366778778888999999999999999999998876655 6
Q ss_pred CCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHH
Q psy764 201 GRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYE 280 (286)
Q Consensus 201 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~ 280 (286)
+.|..++|+..+..+.++...+........+..+...++.+.++++++++++|+++++++++ +++.|...+++
T Consensus 253 c~s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~EG~~~~~~~~~~~~~~~~~~Pi~~~~~~il-------~~~~~~~~~~~ 325 (341)
T PRK12439 253 CTSQRSRNRHVGEQLGAGKPIDEIIASMNQVAEGVKAASVVMEFADEYGLNMPIAREVDAVI-------NHGSTVEQAYR 325 (341)
T ss_pred ccCCCCccHHHHHHHHCCCCHHHHHHhcCCEEehHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCHHHHHH
Confidence 66766777654333322111111001112356678888999999999999999999999987 35566666665
Q ss_pred HHh
Q psy764 281 FLK 283 (286)
Q Consensus 281 ~~~ 283 (286)
.+-
T Consensus 326 ~l~ 328 (341)
T PRK12439 326 GLI 328 (341)
T ss_pred HHh
Confidence 543
|
|
| >TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)) | Back alignment and domain information |
|---|
Probab=99.80 E-value=8e-19 Score=154.29 Aligned_cols=256 Identities=12% Similarity=0.024 Sum_probs=181.2
Q ss_pred ccHHHHHHHHhCC--------CcEEEEcC-----CchHHHHHHHc--------C------CcccCCHHHHhhcCcEEEEe
Q psy764 2 ISTLKLFFLQFQG--------HDVIVYDK-----NTDASQTLAKE--------G------ANMALSLSTLASGAEFIISM 54 (286)
Q Consensus 2 ~G~~lA~~L~~~G--------~~V~~~dr-----~~~~~~~l~~~--------g------~~~~~s~~e~~~~adivi~~ 54 (286)
.|+++|..|+++| |+|.+|.| +++-.+.+.+. | ++.+++++++++++|+||++
T Consensus 10 wGtALA~~la~ng~~~~~~~~~~V~lw~~~~~~~~~~~~~~in~~~~n~~ylpgi~Lp~~i~at~dl~eal~~ADiIIlA 89 (342)
T TIGR03376 10 WGTAIAKIVAENARALPELFEESVRMWVFEEEIEGRNLTEIINTTHENVKYLPGIKLPANLVAVPDLVEAAKGADILVFV 89 (342)
T ss_pred HHHHHHHHHHHcCCcccccCCceEEEEEeccccCCHHHHHHHHhcCCCccccCCCcCCCCeEEECCHHHHHhcCCEEEEE
Confidence 6999999999999 99999998 44444544432 2 34567899999999999999
Q ss_pred cCChhHHHHHhcCCccccccCCCCCEEEEcCCCC-ch--HHHHHHHHHH---hcCCceEeccCCCCHHhhhcCceEEEec
Q psy764 55 LPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD-PQ--VPQTLSNLAR---EKQITFLDAPVSGGTKAAQEATLTFMVG 128 (286)
Q Consensus 55 v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~-p~--~~~~~~~~~~---~~g~~~~~~pv~g~~~~a~~g~l~~~~g 128 (286)
+|+ +.+++++.. +.+.+++++++|.++... +. +.+.+.+.+. ...+.++.+|.+.........+.+++++
T Consensus 90 VPs-~~i~~vl~~---l~~~l~~~~~iVs~tKGie~~~~~~~~~se~i~e~l~~~~~~lsGP~~A~Eva~~~pt~~~ia~ 165 (342)
T TIGR03376 90 IPH-QFLEGICKQ---LKGHVKPNARAISCIKGLEVSKDGVKLLSDIIEEELGIPCGVLSGANLANEVAKEKFSETTVGY 165 (342)
T ss_pred CCh-HHHHHHHHH---HHhhcCCCCEEEEEeCCcccCCCcCccHHHHHHHHhCCCeEEeeCcchHHHHHcCCCceEEEEe
Confidence 995 789999885 777888888999887654 33 2223333222 2345567777777777767777777777
Q ss_pred CC----HhhHHHHHHHHHHhcCCeEecCC---cchHHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy764 129 GD----KSSLEKAKPILKCMGRNIVHCGD---SGNGQVAK--------------LCNNMLLGVTMMGVAEAMNLGVKLGM 187 (286)
Q Consensus 129 g~----~~~~~~~~~ll~~~g~~v~~~g~---~g~a~~~K--------------l~~n~~~~~~~~~~~Ea~~l~~~~Gl 187 (286)
.+ .+..+.++.+|+.-..+++...+ +.-+.++| +..|+..+.+..++.|+.++++.+|-
T Consensus 166 ~~~~~~~~~a~~~~~lf~~~~frv~~s~Dv~GvEl~galKNv~AIa~Gi~~Gl~~g~N~~aalitrgl~Em~~l~~~~g~ 245 (342)
T TIGR03376 166 RDPADFDVDARVLKALFHRPYFRVNVVDDVAGVEIAGALKNVVAIAAGFVDGLGWGDNAKAAVMRRGLLEMIKFARMFFP 245 (342)
T ss_pred CCCcchHHHHHHHHHHhCCCCEEEEEcCCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77 78888888888865555554444 23466666 67899999999999999999999999
Q ss_pred CHH--HHHHHHHcc----CCCcccccccCCCCCccc-cCCCCCCCCC--CccchhHHHHHHHHHHHHhhcCCC--chHHH
Q psy764 188 NAK--LLSDVINTS----SGRCWSSEVYNPVPGVLS-NVPASNNYNG--GFKISLLAKDMKLAEDLANRCTAQ--TDLSK 256 (286)
Q Consensus 188 ~~~--~~~~~~~~~----~~~s~~~~~~~~~~~~~~-~~~~~~~~~~--~f~~~~~~kd~~~~~~~a~~~g~~--~p~~~ 256 (286)
+++ +++++..-+ ++.| ++++..+..+.+ +...+.-... ...+..+....+.+.+++++.+++ +|+++
T Consensus 246 ~~~~~T~~gl~G~GDL~~Tc~s--sRN~~~G~~l~~~g~~~~~~~~~~~~~~~vEG~~t~~~~~~l~~~~~i~~~~Pi~~ 323 (342)
T TIGR03376 246 TGEVTFTFESCGVADLITTCLG--GRNFKVGRAFAKTGKSLEELEKELLNGQSLQGVATAKEVHELLKNKNKDDEFPLFE 323 (342)
T ss_pred CCCCCcccccchhhhhhheeec--CccHHHHHHHHhcCCCHHHHHHhhcCCcEEeeHHHHHHHHHHHHHcCCCcCCCHHH
Confidence 887 887765544 4444 566543322221 1110000000 123455577778899999999999 99999
Q ss_pred HHHHHHH
Q psy764 257 LATSIYK 263 (286)
Q Consensus 257 ~~~~~~~ 263 (286)
++++++.
T Consensus 324 ~vy~il~ 330 (342)
T TIGR03376 324 AVYQILY 330 (342)
T ss_pred HHHHHHh
Confidence 9999874
|
Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria. |
| >PRK08507 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.8e-17 Score=139.77 Aligned_cols=184 Identities=18% Similarity=0.267 Sum_probs=140.9
Q ss_pred CccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHcCCc-ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 1 MISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKEGAN-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~-~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
+||+++|.+|.++|+ +|++|||++++.+.+.+.|+. .+.++.++. ++|+||+|+|. ..+.+++.+ +.+ +++
T Consensus 10 ~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~~~~~~~~-~aD~Vilavp~-~~~~~~~~~---l~~-l~~ 83 (275)
T PRK08507 10 LMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEIVSFEELK-KCDVIFLAIPV-DAIIEILPK---LLD-IKE 83 (275)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCcccCCHHHHh-cCCEEEEeCcH-HHHHHHHHH---Hhc-cCC
Confidence 389999999999996 799999999998888777764 455777766 49999999996 566777764 777 888
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEec-cCCCC----HHhhh----cCceEEEec---CCHhhHHHHHHHHHHhc
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDA-PVSGG----TKAAQ----EATLTFMVG---GDKSSLEKAKPILKCMG 145 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~-pv~g~----~~~a~----~g~l~~~~g---g~~~~~~~~~~ll~~~g 145 (286)
+++|+|++++.+...+.+.+. .+..|+.+ |+.|+ |..+. .|..+++++ ++++.++.++++|+.+|
T Consensus 84 ~~iv~d~gs~k~~i~~~~~~~---~~~~~v~~hPmaG~e~~Gp~~a~~~l~~g~~~il~~~~~~~~~~~~~v~~l~~~~G 160 (275)
T PRK08507 84 NTTIIDLGSTKAKIIESVPKH---IRKNFIAAHPMAGTENSGPKAAIKGLYEGKVVVLCDVEKSGEKHQERAKEIFSGLG 160 (275)
T ss_pred CCEEEECccchHHHHHHHHHh---cCCCEEecCCcCcCchhhHHhccHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence 999999988876666555433 23568876 99875 54432 576677776 35678899999999999
Q ss_pred CCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc
Q psy764 146 RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINT 198 (286)
Q Consensus 146 ~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~ 198 (286)
.+++++++.++...+++++++.. ....++++++. .+.+.+.+.++...
T Consensus 161 ~~~~~~~~~~hD~~~a~vs~lph-~~a~~l~~~~~----~~~~~~~~~~~~~~ 208 (275)
T PRK08507 161 MRIVYMDAKEHDLHAAYISHLPH-IISFALANTVL----KEEDERNIFDLAGG 208 (275)
T ss_pred CEEEEeCHHHHHHHHHHHhHHHH-HHHHHHHHHHH----hcCChHHHHhhccc
Confidence 99999999999999999999965 44555666642 36667666666543
|
|
| >TIGR01724 hmd_rel H2-forming N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase-related protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=9.4e-18 Score=142.60 Aligned_cols=143 Identities=15% Similarity=0.243 Sum_probs=113.4
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHH-----HHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDAS-----QTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~-----~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
|.+||++|+++||+|++|||++++. +.+.+.|+..++++.++++++|+||+|+|++.++++|+. ++.+.+++
T Consensus 32 GspMArnLlkAGheV~V~Drnrsa~e~e~~e~LaeaGA~~AaS~aEAAa~ADVVIL~LPd~aaV~eVl~---GLaa~L~~ 108 (341)
T TIGR01724 32 GSRMAIEFAMAGHDVVLAEPNREFMSDDLWKKVEDAGVKVVSDDKEAAKHGEIHVLFTPFGKGTFSIAR---TIIEHVPE 108 (341)
T ss_pred HHHHHHHHHHCCCEEEEEeCChhhhhhhhhHHHHHCCCeecCCHHHHHhCCCEEEEecCCHHHHHHHHH---HHHhcCCC
Confidence 7899999999999999999987654 458888999999999999999999999999999999984 58889999
Q ss_pred CCEEEEcCCCCchHHHHHHHH---HHhcCC---ceEeccCCCCHHhhhcCceEEEecC--------CHhhHHHHHHHHHH
Q psy764 78 GVIVIDSSTVDPQVPQTLSNL---AREKQI---TFLDAPVSGGTKAAQEATLTFMVGG--------DKSSLEKAKPILKC 143 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~---~~~~g~---~~~~~pv~g~~~~a~~g~l~~~~gg--------~~~~~~~~~~ll~~ 143 (286)
|++|||+||++|....++-+. +..+.+ .|.++.|-|.+.+ ...++.|. +++.++++.++.++
T Consensus 109 GaIVID~STIsP~t~~~~~e~~l~~~r~d~~v~s~HP~~vP~~~~~----~~~~~~~~~~~~~~~A~ee~i~~~~el~~~ 184 (341)
T TIGR01724 109 NAVICNTCTVSPVVLYYSLEKILRLKRTDVGISSMHPAAVPGTPQH----GHYVIGGKPTAGKEMATEEQISKCVELAKS 184 (341)
T ss_pred CCEEEECCCCCHHHHHHHHHHHhhcCccccCeeccCCCCCCCCCCC----ceeeeccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999887665 222322 3444445554433 11233222 57888999999999
Q ss_pred hcCCeEecC
Q psy764 144 MGRNIVHCG 152 (286)
Q Consensus 144 ~g~~v~~~g 152 (286)
.++..+.+-
T Consensus 185 ~~~~~~~~p 193 (341)
T TIGR01724 185 TGKKAYVVP 193 (341)
T ss_pred hCCCeeecc
Confidence 999877553
|
This model represents a sister clade to the authenticated coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin reductase (HMD) of TIGR01723. Two members, designated HmdII and HmdIII, are found. Members are restricted to methanogens, but the function is unknown. |
| >PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-17 Score=155.24 Aligned_cols=177 Identities=17% Similarity=0.282 Sum_probs=142.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHH-----------HHHcC-------------CcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQT-----------LAKEG-------------ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~-----------l~~~g-------------~~~~~s~~e~~~~adivi~~v~ 56 (286)
.||..+|.+|+++||+|++||++++++++ +.+.| ++.+.+++++ .+||+||.|||
T Consensus 17 ~MG~gIA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~~-~~aDlViEav~ 95 (507)
T PRK08268 17 AMGAGIAQVAAQAGHTVLLYDARAGAAAAARDGIAARLAKLVEKGKLTAEQADAALARLRPVEALADL-ADCDLVVEAIV 95 (507)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHHHh-CCCCEEEEcCc
Confidence 38999999999999999999999998776 34445 5777888764 59999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEE-EEcCCCCchHHHHHHHHHHh----cCCceEe-ccCCCCHHhhhcCceEEEecC-
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIV-IDSSTVDPQVPQTLSNLARE----KQITFLD-APVSGGTKAAQEATLTFMVGG- 129 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~iv-id~st~~p~~~~~~~~~~~~----~g~~~~~-~pv~g~~~~a~~g~l~~~~gg- 129 (286)
.+.+++..+++ .+....+++.++ .|+||+++. ++++.+.. .|++|++ +|++ .++.+++|
T Consensus 96 E~~~vK~~vf~--~l~~~~~~~ailasntStl~i~---~la~~~~~p~r~~G~hff~Pa~v~---------~LvEvv~g~ 161 (507)
T PRK08268 96 ERLDVKQALFA--QLEAIVSPDCILATNTSSLSIT---AIAAALKHPERVAGLHFFNPVPLM---------KLVEVVSGL 161 (507)
T ss_pred ccHHHHHHHHH--HHHhhCCCCcEEEECCCCCCHH---HHHhhcCCcccEEEEeecCCcccC---------eeEEEeCCC
Confidence 99999998764 244445678888 489999986 34444332 3888998 7777 47888886
Q ss_pred --CHhhHHHHHHHHHHhcCCeEecCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 130 --DKSSLEKAKPILKCMGRNIVHCGD-SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 130 --~~~~~~~~~~ll~~~g~~v~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
+++.++++.++++.+|+.++++++ .| ++.|-+.. ..++|++.++++.|++++++.+++..+.|
T Consensus 162 ~Ts~~~~~~~~~l~~~lgk~pv~v~d~pG------fi~Nrll~---~~~~Ea~~l~~~g~~~~~~iD~al~~~~G 227 (507)
T PRK08268 162 ATDPAVADALYALARAWGKTPVRAKDTPG------FIVNRAAR---PYYTEALRVLEEGVADPATIDAILREAAG 227 (507)
T ss_pred CCCHHHHHHHHHHHHHcCCceEEecCCCC------hHHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 789999999999999999999996 56 34455443 37899999999999999999999976544
|
|
| >PRK12491 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=142.30 Aligned_cols=245 Identities=11% Similarity=0.049 Sum_probs=175.4
Q ss_pred CccHHHHHHHHhCCC----cEEEEcCCchHHHHHHH-cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 1 MISTLKLFFLQFQGH----DVIVYDKNTDASQTLAK-EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~-~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+||.+++++|.++|+ +|++|||++++.+.+.+ .|+..+.+..+++++||+||+||| |+++++|+.+ +.+.+
T Consensus 12 ~MG~aia~~L~~~g~~~~~~I~v~~r~~~~~~~l~~~~g~~~~~~~~e~~~~aDiIiLavk-P~~~~~vl~~---l~~~~ 87 (272)
T PRK12491 12 NMGIAMIGGMINKNIVSPDQIICSDLNVSNLKNASDKYGITITTNNNEVANSADILILSIK-PDLYSSVINQ---IKDQI 87 (272)
T ss_pred HHHHHHHHHHHHCCCCCCceEEEECCCHHHHHHHHHhcCcEEeCCcHHHHhhCCEEEEEeC-hHHHHHHHHH---HHHhh
Confidence 389999999999885 69999999999988875 688888889999999999999999 5899999974 77777
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecC
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
+++++||+.-...+- .++.+.+.. ..+++ -+| ..+.....|...+..+. +++..+.++.+|+.+|.. +.+.
T Consensus 88 ~~~~lvISi~AGi~i--~~l~~~l~~-~~~vvR~MP--N~~~~vg~g~t~~~~~~~~~~~~~~~v~~lf~~~G~~-~~~~ 161 (272)
T PRK12491 88 KNDVIVVTIAAGKSI--KSTENEFDR-KLKVIRVMP--NTPVLVGEGMSALCFNEMVTEKDIKEVLNIFNIFGQT-EVVN 161 (272)
T ss_pred cCCcEEEEeCCCCcH--HHHHHhcCC-CCcEEEECC--ChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHcCCCE-EEEc
Confidence 788899986544332 334444432 12222 334 44555566764444433 355678899999999984 6665
Q ss_pred C--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCc-ccccccCCCCCccccCCCCCCCCCCc
Q psy764 153 D--SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRC-WSSEVYNPVPGVLSNVPASNNYNGGF 229 (286)
Q Consensus 153 ~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~f 229 (286)
+ .....++--+...+++.++.++.++ +.+.|++.++..+++.++..++ ........-| ..+.+...+|++
T Consensus 162 E~~~d~~talsgsgPAf~~~~~eal~~a---~v~~Gl~~~~A~~l~~~t~~G~a~ll~~~~~~p----~~l~~~V~sPGG 234 (272)
T PRK12491 162 EKLMDVVTSISGSSPAYVYMFIEAMADA---AVLGGMPRKQAYKFAAQAVLGSAKMVLETGIHP----GELKDMVCSPGG 234 (272)
T ss_pred HHHhhhHHHhccCcHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHhCCCCch
Confidence 4 4566666666677788889888888 8999999999999988763222 2211111111 122344557777
Q ss_pred cchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 230 KISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 230 ~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
++.. .++..++.|+.--+.+++.+.++++.+.|
T Consensus 235 tT~~-------gl~~le~~~~~~~~~~av~aa~~r~~el~ 267 (272)
T PRK12491 235 TTIE-------AVATLEEKGLRTAIISAMKRCTQKSMEMS 267 (272)
T ss_pred HHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 7666 56677888999999999999999887754
|
|
| >PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.8e-17 Score=148.44 Aligned_cols=169 Identities=12% Similarity=0.129 Sum_probs=138.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+||+++|+.|.++||+|++|||+.. +++.+++++||+||+|+|.. ....++.+ +.+ +++|++
T Consensus 109 lmG~slA~~l~~~G~~V~~~d~~~~-------------~~~~~~~~~aDlVilavP~~-~~~~~~~~---l~~-l~~~~i 170 (374)
T PRK11199 109 QLGRLFAKMLTLSGYQVRILEQDDW-------------DRAEDILADAGMVIVSVPIH-LTEEVIAR---LPP-LPEDCI 170 (374)
T ss_pred hhhHHHHHHHHHCCCeEEEeCCCcc-------------hhHHHHHhcCCEEEEeCcHH-HHHHHHHH---HhC-CCCCcE
Confidence 4899999999999999999998631 35678889999999999975 55666653 667 889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEecC-CHhhHHHHHHHHHHhcCCeEecCCcchHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGG-DKSSLEKAKPILKCMGRNIVHCGDSGNGQ 158 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg-~~~~~~~~~~ll~~~g~~v~~~g~~g~a~ 158 (286)
|+|+||+++.....+.+... ..|+ .+|++|+......+..++++++ +++.++.+.++++.+|.+++++++.++..
T Consensus 171 v~Dv~SvK~~~~~~~~~~~~---~~fvg~HPm~G~~~~~~~~~~vv~~~~~~~~~~~~~~~l~~~lG~~v~~~~~~~HD~ 247 (374)
T PRK11199 171 LVDLTSVKNAPLQAMLAAHS---GPVLGLHPMFGPDVGSLAKQVVVVCDGRQPEAYQWLLEQIQVWGARLHRISAVEHDQ 247 (374)
T ss_pred EEECCCccHHHHHHHHHhCC---CCEEeeCCCCCCCCcccCCCEEEEcCCCCchHHHHHHHHHHHCCCEEEECCHHHHHH
Confidence 99999998888777765432 2588 7899998776667777777777 56788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHH
Q psy764 159 VAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSD 194 (286)
Q Consensus 159 ~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~ 194 (286)
.+++++-+ .++.+++++..+++ .|.+.+.+.+
T Consensus 248 ~~a~vshL---pH~~a~al~~~l~~-~~~~~~~~~~ 279 (374)
T PRK11199 248 NMAFIQAL---RHFATFAYGLHLAK-ENVDLEQLLA 279 (374)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH-cCCCHHHHHH
Confidence 99999833 67778888888877 7888777644
|
|
| >PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=143.93 Aligned_cols=181 Identities=15% Similarity=0.230 Sum_probs=136.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-------c-----------------CCcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-------E-----------------GANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------~-----------------g~~~~~s~~e~~~~adivi~~v~ 56 (286)
+||..+|.+|+++||+|++||+++++++++.+ . +++.+.++.+++++||+||.|+|
T Consensus 11 ~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi~avp 90 (288)
T PRK09260 11 VMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSYSLDLKAAVADADLVIEAVP 90 (288)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCcHHHhhcCCCEEEEecc
Confidence 38999999999999999999999998877542 1 23457788899999999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEE-EEcCCCCchHHHHHHHHHH-hcCCceEeccCCCCHHhhhcCceEEEecC---CH
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIV-IDSSTVDPQVPQTLSNLAR-EKQITFLDAPVSGGTKAAQEATLTFMVGG---DK 131 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~iv-id~st~~p~~~~~~~~~~~-~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~ 131 (286)
++.+++..+.+ .+.+.+++++++ +++||++|....+..+... ..|.+|+ +|+.++ .++.+++| ++
T Consensus 91 e~~~~k~~~~~--~l~~~~~~~~il~~~tSt~~~~~l~~~~~~~~r~~g~h~~-~Pv~~~-------~Lve~v~g~~t~~ 160 (288)
T PRK09260 91 EKLELKKAVFE--TADAHAPAECYIATNTSTMSPTEIASFTKRPERVIAMHFF-NPVHKM-------KLVELIRGLETSD 160 (288)
T ss_pred CCHHHHHHHHH--HHHhhCCCCcEEEEcCCCCCHHHHHhhcCCcccEEEEecC-CCcccC-------ceEEEeCCCCCCH
Confidence 98877766543 366677888866 7899999876554433211 1377888 788764 57889998 89
Q ss_pred hhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 132 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 132 ~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
+.+++++++++.+|++++++++. .|. +.|-+.. ..++|++.+.+.--.+++++-.++..+
T Consensus 161 ~~~~~~~~~l~~lg~~~v~v~d~-~Gf----~~nRl~~---~~~~ea~~~~~~gv~~~~~iD~~~~~g 220 (288)
T PRK09260 161 ETVQVAKEVAEQMGKETVVVNEF-PGF----VTSRISA---LVGNEAFYMLQEGVATAEDIDKAIRLG 220 (288)
T ss_pred HHHHHHHHHHHHcCCeEEEecCc-ccH----HHHHHHH---HHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 99999999999999999999862 222 2243333 356899888876446788887776544
|
|
| >PRK08655 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-16 Score=144.92 Aligned_cols=188 Identities=17% Similarity=0.258 Sum_probs=144.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHH-HcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLA-KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+||+++|..|.++|++|++|+|++++...+. +.|+..+.++.+++.++|+||+|+|. ..+.+++.. +.+.+++++
T Consensus 11 ~mG~slA~~L~~~G~~V~v~~r~~~~~~~~a~~~gv~~~~~~~e~~~~aDvVIlavp~-~~~~~vl~~---l~~~l~~~~ 86 (437)
T PRK08655 11 GLGKWFARFLKEKGFEVIVTGRDPKKGKEVAKELGVEYANDNIDAAKDADIVIISVPI-NVTEDVIKE---VAPHVKEGS 86 (437)
T ss_pred HHHHHHHHHHHHCCCEEEEEECChHHHHHHHHHcCCeeccCHHHHhccCCEEEEecCH-HHHHHHHHH---HHhhCCCCC
Confidence 3899999999999999999999988865554 45887778889999999999999996 567788764 777888999
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEec-cCCCCHHhhhcCceEEEecC---CHhhHHHHHHHHHHhcCCeEecCCcc
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDA-PVSGGTKAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNIVHCGDSG 155 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~g~~g 155 (286)
+|+|++++.+...+.+.+.+ ..+..|+.+ |++|.......+...+++.+ +++.+++++++|+.+|.+++++++..
T Consensus 87 iViDvsSvK~~~~~~l~~~~-~~~~~~V~~HPmaGp~~~~~~g~~~il~p~~~~~~~~~~~v~~ll~~~G~~v~~~~~e~ 165 (437)
T PRK08655 87 LLMDVTSVKERPVEAMEEYA-PEGVEILPTHPMFGPRTPSLKGQVVILTPTEKRSNPWFDKVKNFLEKEGARVIVTSPEE 165 (437)
T ss_pred EEEEcccccHHHHHHHHHhc-CCCCEEEEcCCCCCCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHH
Confidence 99999999888888777664 347789976 99886555566776777765 47788999999999999999888754
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
+...+ .+.....++.+++.+..+ .+.|++.+....+.+
T Consensus 166 HD~~~---a~vs~lph~~a~al~~~l-~~~g~~~~~~~~~a~ 203 (437)
T PRK08655 166 HDRIM---SVVQGLTHFAYISIASTL-KRLGVDIKESRKFAS 203 (437)
T ss_pred HHHHH---HHHHHHHHHHHHHHHHHH-HHcCCCHHHHHhhcC
Confidence 44444 333344444445555444 677999887655543
|
|
| >TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-17 Score=151.45 Aligned_cols=176 Identities=20% Similarity=0.247 Sum_probs=135.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH-----------HHcC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL-----------AKEG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||..+|.+|+++||+|++||++++++++. .+.| ++.+++++++ .+||+||.|+|.
T Consensus 16 MG~gIA~~la~aG~~V~l~d~~~e~l~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~~~~~l-~~aDlVIEav~E 94 (503)
T TIGR02279 16 MGAGIAQVAASAGHQVLLYDIRAEALARAIAGIEARLNSLVTKGKLTAEECERTLKRLIPVTDLHAL-ADAGLVIEAIVE 94 (503)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccEEeCCHHHh-CCCCEEEEcCcC
Confidence 89999999999999999999999987643 3334 4567788664 699999999999
Q ss_pred hhHHHHHhcCCccccccCCCCCEEE-EcCCCCchHHHHHHHHH----HhcCCceEe-ccCCCCHHhhhcCceEEEecC--
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVI-DSSTVDPQVPQTLSNLA----REKQITFLD-APVSGGTKAAQEATLTFMVGG-- 129 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivi-d~st~~p~~~~~~~~~~----~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg-- 129 (286)
+.+++..+++ .+....+++.++. ++||.++. ++++.+ ...|.+|++ +|++. ++.+++|
T Consensus 95 ~~~vK~~vf~--~l~~~~~~~~IlasnTStl~i~---~iA~~~~~p~r~~G~HFf~Papv~~---------LvEvv~g~~ 160 (503)
T TIGR02279 95 NLEVKKALFA--QLEELCPADTIIASNTSSLSIT---AIAAGLARPERVAGLHFFNPAPVMA---------LVEVVSGLA 160 (503)
T ss_pred cHHHHHHHHH--HHHhhCCCCeEEEECCCCCCHH---HHHHhcCcccceEEEeccCccccCc---------eEEEeCCCC
Confidence 9999988764 2444455555443 45555554 333333 235788998 78773 7899999
Q ss_pred -CHhhHHHHHHHHHHhcCCeEecCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 130 -DKSSLEKAKPILKCMGRNIVHCGD-SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 130 -~~~~~~~~~~ll~~~g~~v~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
+++.++++.++++.+|+.++++++ .|. +.|-+. ...++|++.+.++.+++++++.+++..+.|
T Consensus 161 Ts~e~~~~~~~l~~~lgk~pv~v~d~pGf------i~Nrl~---~~~~~EA~~l~e~g~a~~~~ID~al~~~~G 225 (503)
T TIGR02279 161 TAAEVAEQLYETALAWGKQPVHCHSTPGF------IVNRVA---RPYYAEALRALEEQVAAPAVLDAALRDGAG 225 (503)
T ss_pred CCHHHHHHHHHHHHHcCCeeeEeCCCCCc------HHHHHH---HHHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 899999999999999999999996 553 344433 258899999999999999999999986533
|
This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.8e-17 Score=141.95 Aligned_cols=166 Identities=16% Similarity=0.231 Sum_probs=128.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc-ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+||+++|..|.++|++|++|||++++.+.+.+.|.. ...+..+.++++|+||+|+|. ..+.+++.+ +.+.+.++.
T Consensus 10 ~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~aDlVilavp~-~~~~~~~~~---l~~~l~~~~ 85 (279)
T PRK07417 10 LIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGLVDEASTDLSLLKDCDLVILALPI-GLLLPPSEQ---LIPALPPEA 85 (279)
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCcccccCCHhHhcCCCEEEEcCCH-HHHHHHHHH---HHHhCCCCc
Confidence 489999999999999999999999998888877743 233334678899999999995 566677653 777788899
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCH-Hhhhc-------CceEEEe---cCCHhhHHHHHHHHHHhcCC
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGT-KAAQE-------ATLTFMV---GGDKSSLEKAKPILKCMGRN 147 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~-~~a~~-------g~l~~~~---gg~~~~~~~~~~ll~~~g~~ 147 (286)
+|+|++++++...+.+.+. ...|+. +|++|++ .+.+. +...+++ +++++.++.++++++.+|.+
T Consensus 86 ii~d~~Svk~~~~~~~~~~----~~~~v~~HPm~G~~~~g~~~a~~~lf~g~~~~l~p~~~~~~~~~~~v~~l~~~lG~~ 161 (279)
T PRK07417 86 IVTDVGSVKAPIVEAWEKL----HPRFVGSHPMAGTAESGVEAGQRGLFKNRPWVLTPTENTDLNALAIVEELAVSLGSK 161 (279)
T ss_pred EEEeCcchHHHHHHHHHHh----hCCceeeCCcCCCCcchHHHhhHHHhCCCcEEEccCCCCCHHHHHHHHHHHHHcCCE
Confidence 9999999987766554432 335887 7999976 33332 3333333 24678899999999999999
Q ss_pred eEecCCcchHHHHHHHHHHHHHHHHHH
Q psy764 148 IVHCGDSGNGQVAKLCNNMLLGVTMMG 174 (286)
Q Consensus 148 v~~~g~~g~a~~~Kl~~n~~~~~~~~~ 174 (286)
++++++.+....+++++|+..+.....
T Consensus 162 ~v~~~~~~hD~~~a~~shlp~~~a~~l 188 (279)
T PRK07417 162 IYTADPEEHDRAVALISHLPVMVSAAL 188 (279)
T ss_pred EEEcCHHHHHHHHHHHcchHHHHHHHH
Confidence 999999999999999999887655443
|
|
| >PRK06476 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=134.83 Aligned_cols=235 Identities=12% Similarity=0.085 Sum_probs=155.1
Q ss_pred CccHHHHHHHHhCCCc---EEEEcCCchHHHHHHHc--CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 1 MISTLKLFFLQFQGHD---VIVYDKNTDASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~---V~~~dr~~~~~~~l~~~--g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+||++++++|.+.|++ +.+|||++++.+.+.+. +...+.++.++++++|+||+|+| |+++++++.. + . +
T Consensus 10 ~mG~aia~~L~~~g~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~---l-~-~ 83 (258)
T PRK06476 10 AITEAMVTGLLTSPADVSEIIVSPRNAQIAARLAERFPKVRIAKDNQAVVDRSDVVFLAVR-PQIAEEVLRA---L-R-F 83 (258)
T ss_pred HHHHHHHHHHHhCCCChheEEEECCCHHHHHHHHHHcCCceEeCCHHHHHHhCCEEEEEeC-HHHHHHHHHH---h-c-c
Confidence 3899999999999864 58999999999888765 57778899999999999999999 6788998864 3 2 4
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCc-
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDS- 154 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~- 154 (286)
.++++||+++ .+.+...+.+.+......+..+|+.. .....+. +.+++++ +.++++|+.+|..++ +++.
T Consensus 84 ~~~~~vis~~--ag~~~~~l~~~~~~~~~~~r~~P~~~--~a~~~g~-t~~~~~~----~~~~~l~~~lG~~~~-~~~e~ 153 (258)
T PRK06476 84 RPGQTVISVI--AATDRAALLEWIGHDVKLVRAIPLPF--VAERKGV-TAIYPPD----PFVAALFDALGTAVE-CDSEE 153 (258)
T ss_pred CCCCEEEEEC--CCCCHHHHHHHhCCCCCEEEECCCCh--hhhCCCC-eEecCCH----HHHHHHHHhcCCcEE-ECChH
Confidence 6789999755 44555666666544445566778732 2223343 5566553 588999999998665 4421
Q ss_pred --chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccc-cccCCCCCccccCCCCCCCCCCccc
Q psy764 155 --GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSS-EVYNPVPGVLSNVPASNNYNGGFKI 231 (286)
Q Consensus 155 --g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~-~~~~~~~~~~~~~~~~~~~~~~f~~ 231 (286)
...+++ . ...+.....+.++..++++.|+|+++..+++.....++..+ ...... -+..+.+...+|++++
T Consensus 154 ~~d~~~a~---~-s~~a~~~~~~~~~~~~~~~~Gl~~~~a~~~~~~~~~G~~~l~~~~~~~---~~~~l~~~v~spgGtT 226 (258)
T PRK06476 154 EYDLLAAA---S-ALMATYFGILETATGWLEEQGLKRQKARAYLAPLFASLAQDAVRSTKT---DFSALSREFSTKGGLN 226 (258)
T ss_pred hccceeeh---h-ccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCC---CHHHHHHhCCCCCchH
Confidence 111111 0 12333334677888889999999999999988653222211 000100 0011223445677766
Q ss_pred hhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 232 SLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 232 ~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
.. .++..++.|+.-.+.+++...++++
T Consensus 227 ~~-------gl~~le~~~~~~~~~~a~~aa~~r~ 253 (258)
T PRK06476 227 EQ-------VLNDFSRQGGYAALTDALDRVLRRI 253 (258)
T ss_pred HH-------HHHHHHHCChHHHHHHHHHHHHHHh
Confidence 66 5566677788777777777766655
|
|
| >PRK07680 late competence protein ComER; Validated | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.3e-16 Score=135.92 Aligned_cols=185 Identities=9% Similarity=0.138 Sum_probs=135.7
Q ss_pred ccHHHHHHHHhCCC----cEEEEcCCchHHHHHHHc--CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQGH----DVIVYDKNTDASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~~--g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||+++++.|.++|+ +|.+|||++++.+.+.+. |+....++.+++.++|+||+|+| ++++++++.. +.+.+
T Consensus 11 mG~ala~~L~~~g~~~~~~v~v~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~aDiVilav~-p~~~~~vl~~---l~~~l 86 (273)
T PRK07680 11 MGTILIEAFLESGAVKPSQLTITNRTPAKAYHIKERYPGIHVAKTIEEVISQSDLIFICVK-PLDIYPLLQK---LAPHL 86 (273)
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCHHHHHHHHHHcCCeEEECCHHHHHHhCCEEEEecC-HHHHHHHHHH---HHhhc
Confidence 89999999999994 799999999988887664 67778899999999999999999 5788999874 77778
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEec--CCHhhHHHHHHHHHHhcCCeEecCC
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG--GDKSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g--g~~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
.++++||+++... ..+.+.+.+..+.+++++ +.+..+..|...++.| .+.+.++.++++|+.+|. ++++.+
T Consensus 87 ~~~~~iis~~ag~--~~~~L~~~~~~~~~r~~p----~~~~~~~~G~t~~~~g~~~~~~~~~~~~~ll~~~G~-~~~i~e 159 (273)
T PRK07680 87 TDEHCLVSITSPI--SVEQLETLVPCQVARIIP----SITNRALSGASLFTFGSRCSEEDQQKLERLFSNIST-PLVIEE 159 (273)
T ss_pred CCCCEEEEECCCC--CHHHHHHHcCCCEEEECC----ChHHHHhhccEEEeeCCCCCHHHHHHHHHHHHcCCC-EEEECh
Confidence 8889999998644 355565555433344543 3445566787655665 356778899999999996 566654
Q ss_pred c--chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 154 S--GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 154 ~--g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
. .....+-.+...+++.++.++.++. .++.|+++++..+++...
T Consensus 160 ~~~~~~~~l~gs~pa~~~~~~~al~~~~--~~~~Gl~~~~a~~~~~~~ 205 (273)
T PRK07680 160 DITRVSSDIVSCGPAFFSYLLQRFIDAA--VEETNISKEEATTLASEM 205 (273)
T ss_pred HhcchhhhhccchHHHHHHHHHHHHHHH--HHhcCCCHHHHHHHHHHH
Confidence 1 2223333334456777777777763 234899999999887765
|
|
| >PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.2e-16 Score=138.49 Aligned_cols=267 Identities=13% Similarity=0.093 Sum_probs=159.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC--------------CcccCCHHHHh-hcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG--------------ANMALSLSTLA-SGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~ 66 (286)
||+++|..|.++||+|.+|+|+++.++.+.+.+ +....++.+.+ ..+|+||+|+|+ +++++++.
T Consensus 11 ~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~Dliiiavks-~~~~~~l~ 89 (326)
T PRK14620 11 FGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVKSAIDEVLSDNATCIILAVPT-QQLRTICQ 89 (326)
T ss_pred HHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEeCCHHHHHhCCCCEEEEEeCH-HHHHHHHH
Confidence 799999999999999999999998888776531 12345666766 589999999995 68999987
Q ss_pred CCccccc-cCCCCCEEEEcCCCCchH-----HHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHH
Q psy764 67 GSDGILK-HAKPGVIVIDSSTVDPQV-----PQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPI 140 (286)
Q Consensus 67 ~~~~l~~-~l~~g~ivid~st~~p~~-----~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 140 (286)
. +.+ .+.+++.||.++...... .+.+.+.+..+.+..+.+|.+.........+...+.|.+.+..+++..+
T Consensus 90 ~---l~~~~l~~~~~vv~~~nGi~~~~~~~~~~~l~~~~~~~~~~~~~Gp~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~ 166 (326)
T PRK14620 90 Q---LQDCHLKKNTPILICSKGIEKSSLKFPSEIVNEILPNNPIAILSGPSFAKEIAEKLPCSIVLAGQNETLGSSLISK 166 (326)
T ss_pred H---HHHhcCCCCCEEEEEEcCeeCCCCccHHHHHHHHcCCCceEeecCCcHHHHHHcCCCcEEEEecCCHHHHHHHHHH
Confidence 5 666 666666555554443221 2223333333333344444322222222233344555556555666666
Q ss_pred HHHhcCCeEecCCcchHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHcCC--CHHHHH------HH
Q psy764 141 LKCMGRNIVHCGDSGNGQVAKLC-----------------NNMLLGVTMMGVAEAMNLGVKLGM--NAKLLS------DV 195 (286)
Q Consensus 141 l~~~g~~v~~~g~~g~a~~~Kl~-----------------~n~~~~~~~~~~~Ea~~l~~~~Gl--~~~~~~------~~ 195 (286)
|+.-+.+++...++-.....|++ .|.....+..++.|+..++++.|. ++++++ ++
T Consensus 167 l~~~~~~~~~~~Di~g~~~~k~~~N~ia~~~g~~~g~~~~~n~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~gl~g~gdl 246 (326)
T PRK14620 167 LSNENLKIIYSQDIIGVQIGAALKNIIAIACGIVLGKNLGNNAHAAVITKGMNEIKTLYSAKNGSIDLNTLIGPSCLGDL 246 (326)
T ss_pred HCCCCeEEEecCcchhhhhHHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHhCCCCCcchhhccchhhhh
Confidence 66656555554454333333333 255556678899999999999987 889885 44
Q ss_pred HHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCch
Q psy764 196 INTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDF 275 (286)
Q Consensus 196 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~ 275 (286)
+. ++.+..++++..+..+..+.+..+.....-+.-....-+..+.++++++|+++|+.+.+++++ +++.+.
T Consensus 247 ~~--t~~~~~~rN~~~G~~l~~g~~~~d~~~~~~~~vegi~~~~~v~~~a~~~~i~~P~~~~l~~~~-------~~~~~~ 317 (326)
T PRK14620 247 IL--TCTTLHSRNMSFGFKIGNGFNINQILSEGKSVIEGFSTVKPLISLAKKLNIELPICESIYNLL-------YENISL 317 (326)
T ss_pred hh--eecCCCCCcHHHHHHHHCCCCHHHHHHhCCCEeecHHHHHHHHHHHHHhCCCCCHHHHHHHHH-------hCCCCH
Confidence 42 222223333331111111111111000111223455566789999999999999999999986 345555
Q ss_pred hHHHHH
Q psy764 276 SYIYEF 281 (286)
Q Consensus 276 ~~~~~~ 281 (286)
..+++.
T Consensus 318 ~~~~~~ 323 (326)
T PRK14620 318 EKTISV 323 (326)
T ss_pred HHHHHH
Confidence 555544
|
|
| >COG0345 ProC Pyrroline-5-carboxylate reductase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.2e-16 Score=131.32 Aligned_cols=243 Identities=13% Similarity=0.131 Sum_probs=174.9
Q ss_pred CccHHHHHHHHhCC----CcEEEEcCCchHHHHHH-HcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 1 MISTLKLFFLQFQG----HDVIVYDKNTDASQTLA-KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G----~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
.||.+|+..|.++| .+|++.||++++.+.+. +.|+..+++..++++++|+||+||+ |+.+++|+.. +.+ .
T Consensus 11 ~Mg~Ai~~gl~~~g~~~~~~I~v~~~~~e~~~~l~~~~g~~~~~~~~~~~~~advv~LavK-Pq~~~~vl~~---l~~-~ 85 (266)
T COG0345 11 NMGEAILSGLLKSGALPPEEIIVTNRSEEKRAALAAEYGVVTTTDNQEAVEEADVVFLAVK-PQDLEEVLSK---LKP-L 85 (266)
T ss_pred HHHHHHHHHHHhcCCCCcceEEEeCCCHHHHHHHHHHcCCcccCcHHHHHhhCCEEEEEeC-hHhHHHHHHH---hhc-c
Confidence 38999999999999 58999999999997554 4577767888999999999999999 7899999986 555 6
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecC
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
.++++||...... +...+.+++. +..++- +| ..+.....|...+..+. +++..+.+..+|+.+|. ++++.
T Consensus 86 ~~~~lvISiaAGv--~~~~l~~~l~--~~~vvR~MP--Nt~a~vg~g~t~i~~~~~~~~~~~~~v~~l~~~~G~-v~~v~ 158 (266)
T COG0345 86 TKDKLVISIAAGV--SIETLERLLG--GLRVVRVMP--NTPALVGAGVTAISANANVSEEDKAFVEALLSAVGK-VVEVE 158 (266)
T ss_pred cCCCEEEEEeCCC--CHHHHHHHcC--CCceEEeCC--ChHHHHcCcceeeecCccCCHHHHHHHHHHHHhcCC-eEEec
Confidence 7899999654333 3345555554 344442 34 44555566774444433 56777899999999998 56665
Q ss_pred C--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCc-ccccccCCCCCccccCCCCCCCCCCc
Q psy764 153 D--SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRC-WSSEVYNPVPGVLSNVPASNNYNGGF 229 (286)
Q Consensus 153 ~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~f 229 (286)
+ .....++--+...+++.++.++.++ +.+.|++.++.++++..+..++ .+.......|. .+.++..+|++
T Consensus 159 E~~~da~TaisGSgPAyv~~~iEal~~a---gv~~Gl~~~~A~~l~~~t~~Gaakll~e~~~~p~----~Lr~~VtSPGG 231 (266)
T COG0345 159 ESLMDAVTALSGSGPAYVFLFIEALADA---GVRLGLPREEARELAAQTVAGAAKLLLESGEHPA----ELRDQVTSPGG 231 (266)
T ss_pred hHHhhHHHHHhcCCHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHhCcCCCc
Confidence 4 3455555555666688888888888 9999999999999988764322 22221111121 22355567888
Q ss_pred cchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 230 KISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 230 ~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
++....+++ ++.|+..-+.+++.+.++++.+.|
T Consensus 232 tTiagl~~l-------e~~g~~~~v~~av~aa~~r~~el~ 264 (266)
T COG0345 232 TTIAGLRVL-------EEDGFRGAVIEAVEAAYKRSEELG 264 (266)
T ss_pred hHHHHHHHH-------HHhChHHHHHHHHHHHHHHHHHhc
Confidence 888755554 478899999999999999988755
|
|
| >PRK08269 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.2e-16 Score=138.03 Aligned_cols=176 Identities=19% Similarity=0.261 Sum_probs=136.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-------HH-----------HHHHcC-------------CcccCC--HHHHhhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-------SQ-----------TLAKEG-------------ANMALS--LSTLASGA 48 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-------~~-----------~l~~~g-------------~~~~~s--~~e~~~~a 48 (286)
||..+|..++.+|++|.+||++++. ++ .+.+.| ++.+.+ +.+++++|
T Consensus 1 MG~giA~~~a~~G~~V~l~d~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~a~~~a 80 (314)
T PRK08269 1 MGQGIALAFAFAGHDVTLIDFKPRDAAGWRALDAEARAEIERTLAALVALGRIDAAQADAVLARIAVVARDGAADALADA 80 (314)
T ss_pred CcHHHHHHHHhCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEeecCcchHHHhccC
Confidence 8999999999999999999999842 11 111112 333433 67889999
Q ss_pred cEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHH----hcCCceEecc-------CCCCHHh
Q psy764 49 EFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAR----EKQITFLDAP-------VSGGTKA 117 (286)
Q Consensus 49 divi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~----~~g~~~~~~p-------v~g~~~~ 117 (286)
|+||-|||.+.+++..+++ .+.+.+++++++ +||+++....++++.+. -.|.+|++.| |.+++
T Consensus 81 D~ViEav~E~~~~K~~~f~--~l~~~~~~~~il--aSntS~~~~~~la~~~~~p~r~~g~Hf~~Pp~~~~lvEVv~g~-- 154 (314)
T PRK08269 81 DLVFEAVPEVLDAKREALR--WLGRHVDADAII--ASTTSTFLVTDLQRHVAHPERFLNAHWLNPAYLMPLVEVSPSD-- 154 (314)
T ss_pred CEEEECCcCCHHHHHHHHH--HHHhhCCCCcEE--EEccccCCHHHHHhhcCCcccEEEEecCCccccCceEEEeCCC--
Confidence 9999999999999988875 366667788777 67777877888888763 2467888766 44333
Q ss_pred hhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 118 AQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 118 a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
+++++.++++.++++.+|+.++++++.+ |. ++...+...++|++.++++.|++++++.+++.
T Consensus 155 ----------~t~~e~~~~~~~ll~~lGk~~v~v~d~~-Gf-------i~nri~~~~l~EAl~l~e~g~~~~e~iD~a~~ 216 (314)
T PRK08269 155 ----------ATDPAVVDRLAALLERIGKVPVVCGPSP-GY-------IVPRIQALAMNEAARMVEEGVASAEDIDKAIR 216 (314)
T ss_pred ----------CCCHHHHHHHHHHHHHcCCcEEEecCCC-Cc-------chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 5688999999999999999999999754 32 34555677899999999999999999999988
Q ss_pred ccCC
Q psy764 198 TSSG 201 (286)
Q Consensus 198 ~~~~ 201 (286)
.+.+
T Consensus 217 ~g~G 220 (314)
T PRK08269 217 TGFG 220 (314)
T ss_pred hCCC
Confidence 7654
|
|
| >PRK11880 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-15 Score=129.62 Aligned_cols=242 Identities=15% Similarity=0.144 Sum_probs=160.3
Q ss_pred ccHHHHHHHHhCC---CcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQG---HDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G---~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||+.++..|.++| ++|.+|||++++.+.+.+. |+....++.++++++|+||+|+|. .++++++.. +.+.+
T Consensus 13 mG~~la~~l~~~g~~~~~v~v~~r~~~~~~~~~~~~g~~~~~~~~~~~~~advVil~v~~-~~~~~v~~~---l~~~~-- 86 (267)
T PRK11880 13 MASAIIGGLLASGVPAKDIIVSDPSPEKRAALAEEYGVRAATDNQEAAQEADVVVLAVKP-QVMEEVLSE---LKGQL-- 86 (267)
T ss_pred HHHHHHHHHHhCCCCcceEEEEcCCHHHHHHHHHhcCCeecCChHHHHhcCCEEEEEcCH-HHHHHHHHH---HHhhc--
Confidence 7899999999999 7899999999998888775 888888999999999999999995 678998875 55544
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecC-C
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCG-D 153 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g-~ 153 (286)
+++||.+++..+. ..+.+.+ ..+.+++. .| ..|.....+...+..+. +++.++.++.+|+.+|. ++++. +
T Consensus 87 ~~~vvs~~~gi~~--~~l~~~~-~~~~~iv~~~P--~~p~~~~~~~~~i~~~~~~~~~~~~~v~~l~~~lG~-~~~~~~e 160 (267)
T PRK11880 87 DKLVVSIAAGVTL--ARLERLL-GADLPVVRAMP--NTPALVGAGMTALTANALVSAEDRELVENLLSAFGK-VVWVDDE 160 (267)
T ss_pred CCEEEEecCCCCH--HHHHHhc-CCCCcEEEecC--CchHHHcCceEEEecCCCCCHHHHHHHHHHHHhCCe-EEEECCh
Confidence 5778877665543 2344443 23445554 34 34444445554445544 68889999999999997 55665 3
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCc-ccccccCCCCCccccCCCCCCCCCCcc
Q psy764 154 --SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRC-WSSEVYNPVPGVLSNVPASNNYNGGFK 230 (286)
Q Consensus 154 --~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~f~ 230 (286)
...+.++--....+.+.++.++.++ +.+.|+++++..+++.....+. .........|. ...+..-.|+.+
T Consensus 161 ~~~d~~~a~~~~~pa~~~~~~~~~~~~---~~~~Gl~~~~a~~~~~~~~~g~~~~~~~~~~~~~----~l~~~v~tpgG~ 233 (267)
T PRK11880 161 KQMDAVTAVSGSGPAYVFLFIEALADA---GVKLGLPREQARKLAAQTVLGAAKLLLESGEHPA----ELRDNVTSPGGT 233 (267)
T ss_pred HhcchHHHHhcChHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHhCCCCcHH
Confidence 2233333222233344444444444 7889999999988887652111 11110000011 111222244544
Q ss_pred chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 231 ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 231 ~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
+.. .++..++.|++..+.+++.+.++++.+.+
T Consensus 234 t~~-------gl~~l~~~g~~~~~~~a~~~~~~ra~~~~ 265 (267)
T PRK11880 234 TIA-------ALRVLEEKGLRAAVIEAVQAAAKRSKELG 265 (267)
T ss_pred HHH-------HHHHHHHCCHHHHHHHHHHHHHHHHHHhc
Confidence 444 67788889999999999999999998864
|
|
| >PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.1e-15 Score=129.99 Aligned_cols=184 Identities=18% Similarity=0.231 Sum_probs=127.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----C--------------CcccCCHHHHhhcCcEEEEecCChhHH-
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----G--------------ANMALSLSTLASGAEFIISMLPASQDV- 61 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g--------------~~~~~s~~e~~~~adivi~~v~~~~~~- 61 (286)
||+++|..|+++|++|++||+++++.+.+.+. | +..++++.+++++||+||+|+|.+.++
T Consensus 15 mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi~av~~~~~~~ 94 (311)
T PRK06130 15 MGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRMEAGLAAAVSGADLVIEAVPEKLELK 94 (311)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEEeCCHHHHhccCCEEEEeccCcHHHH
Confidence 89999999999999999999999887766541 2 245677888899999999999976544
Q ss_pred HHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHhhHHHHH
Q psy764 62 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKSSLEKAK 138 (286)
Q Consensus 62 ~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~ 138 (286)
..++.. +.+.++++.+| .++|.... ..++++.+.. ..+++..-.+..+ .. +.+..++.| +++.++.++
T Consensus 95 ~~v~~~---l~~~~~~~~ii-~s~tsg~~-~~~l~~~~~~-~~~~ig~h~~~p~-~~--~~l~~i~~g~~t~~~~~~~v~ 165 (311)
T PRK06130 95 RDVFAR---LDGLCDPDTIF-ATNTSGLP-ITAIAQAVTR-PERFVGTHFFTPA-DV--IPLVEVVRGDKTSPQTVATTM 165 (311)
T ss_pred HHHHHH---HHHhCCCCcEE-EECCCCCC-HHHHHhhcCC-cccEEEEccCCCC-cc--CceEEEeCCCCCCHHHHHHHH
Confidence 455543 44444455444 34443333 3455555532 2233332212211 11 224455555 588999999
Q ss_pred HHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 139 PILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 139 ~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
++|+.+|+.++++++...|. ++||++. ..++|++.++++.|+|++++.+++..+.+
T Consensus 166 ~l~~~~G~~~v~~~~d~~G~---i~nr~~~----~~~~Ea~~l~~~g~~~~~~id~~~~~~~g 221 (311)
T PRK06130 166 ALLRSIGKRPVLVKKDIPGF---IANRIQH----ALAREAISLLEKGVASAEDIDEVVKWSLG 221 (311)
T ss_pred HHHHHcCCEEEEEcCCCCCc---HHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhcCC
Confidence 99999999999997422233 6777754 46999999999999999999999986654
|
|
| >PRK06545 prephenate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-14 Score=130.32 Aligned_cols=186 Identities=20% Similarity=0.271 Sum_probs=135.7
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc----ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc-cC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN----MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK-HA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~----~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~-~l 75 (286)
+||+++|+.|.++|++|.+|++++++.+.....+.. ..+++.+++++||+||+|+|. +.+.+++.. +.+ .+
T Consensus 10 liG~siA~~L~~~G~~v~i~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~aDlVilavP~-~~~~~vl~~---l~~~~l 85 (359)
T PRK06545 10 LIGGSLALAIKAAGPDVFIIGYDPSAAQLARALGFGVIDELAADLQRAAAEADLIVLAVPV-DATAALLAE---LADLEL 85 (359)
T ss_pred HHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHhcCCCCcccccCHHHHhcCCCEEEEeCCH-HHHHHHHHH---HhhcCC
Confidence 489999999999999999999988765544444432 235678889999999999996 578888874 665 47
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHH--------hhhcCceEEEec---CCHhhHHHHHHHHHH
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTK--------AAQEATLTFMVG---GDKSSLEKAKPILKC 143 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~--------~a~~g~l~~~~g---g~~~~~~~~~~ll~~ 143 (286)
+++.+|.|+++++....+.+.+. ...+.+|+. +|+.|++. ....+..++++. .+++.++.++++++.
T Consensus 86 ~~~~ivtDv~SvK~~i~~~~~~~-~~~~~~~ig~HPMaG~e~sG~~aa~~~lf~g~~~il~~~~~~~~~~~~~v~~l~~~ 164 (359)
T PRK06545 86 KPGVIVTDVGSVKGAILAEAEAL-LGDLIRFVGGHPMAGSHKSGVAAARADLFENAPWVLTPDDHTDPDAVAELKDLLSG 164 (359)
T ss_pred CCCcEEEeCccccHHHHHHHHHh-cCCCCeEEeeCCcCcCchhhHHHhcHHHHCCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 78999999999998877777655 345678998 69888631 222444455664 467889999999999
Q ss_pred hcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc
Q psy764 144 MGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINT 198 (286)
Q Consensus 144 ~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~ 198 (286)
+|..++++++......+.+++....+ +++++ +...+.+.+....+...
T Consensus 165 lGa~~v~~~~~~HD~~~A~vshlPh~-----ia~al--~~~~~~~~~~~~~la~~ 212 (359)
T PRK06545 165 TGAKFVVLDAEEHDRAVALVSHLPHI-----LASSL--AARLAGEHPLALRLAAG 212 (359)
T ss_pred cCCEEEECCHHHHhHHHhHhccHHHH-----HHHHH--HHhhccCchHHHhhhcc
Confidence 99998889876666677665555433 22332 56667666666666544
|
|
| >PLN02545 3-hydroxybutyryl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-14 Score=126.13 Aligned_cols=180 Identities=17% Similarity=0.217 Sum_probs=128.0
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHH-----------HHHcC------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQT-----------LAKEG------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~-----------l~~~g------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
.||..+|.+|+++|++|++||+++++.+. +.+.| .....+..+++++||+||.|+|.
T Consensus 14 ~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vieav~e 93 (295)
T PLN02545 14 QMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRCTTNLEELRDADFIIEAIVE 93 (295)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEeeCCHHHhCCCCEEEEcCcc
Confidence 38999999999999999999999987653 33322 12233334678999999999998
Q ss_pred hhHHHHHhcCCccccccCCCCCEEE-EcCCCCchHHHHHHHH-HHhcCCceEeccCCCCHHhhhcCceEEEecC---CHh
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVI-DSSTVDPQVPQTLSNL-AREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKS 132 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivi-d~st~~p~~~~~~~~~-~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~ 132 (286)
+.+++..+.+ .+.+.++++.+|+ ++|++++.+..+.... ..-.|++|++.|..+ .++.++.| +++
T Consensus 94 ~~~~k~~v~~--~l~~~~~~~~il~s~tS~i~~~~l~~~~~~~~r~~g~h~~~pp~~~--------~lveiv~g~~t~~e 163 (295)
T PLN02545 94 SEDLKKKLFS--ELDRICKPSAILASNTSSISITRLASATQRPQQVIGMHFMNPPPIM--------KLVEIIRGADTSDE 163 (295)
T ss_pred CHHHHHHHHH--HHHhhCCCCcEEEECCCCCCHHHHHhhcCCCcceEEEeccCCcccC--------ceEEEeCCCCCCHH
Confidence 8888777654 2556677888886 7888877655443221 111356777766543 33555544 789
Q ss_pred hHHHHHHHHHHhcCCeEecCCc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 133 SLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~-g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
.+++++++|+.+|+.++++++. | .++++++.. .++|++.+.+.-..+++++-.++..+
T Consensus 164 ~~~~~~~ll~~lG~~~~~~~d~~g-----~i~nri~~~----~~~ea~~~~~~gv~~~~~iD~~~~~g 222 (295)
T PLN02545 164 VFDATKALAERFGKTVVCSQDYPG-----FIVNRILMP----MINEAFYALYTGVASKEDIDTGMKLG 222 (295)
T ss_pred HHHHHHHHHHHcCCeeEEecCccc-----HHHHHHHHH----HHHHHHHHHHcCCCCHHHHHHHHHhc
Confidence 9999999999999999998863 4 244444433 57899998888667888887776544
|
|
| >TIGR00112 proC pyrroline-5-carboxylate reductase | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.7e-14 Score=120.93 Aligned_cols=229 Identities=13% Similarity=0.130 Sum_probs=157.3
Q ss_pred CCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHH
Q psy764 14 GHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVP 92 (286)
Q Consensus 14 G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~ 92 (286)
.++|.+|+|++++.+.+.+. |+..+.++.++++++|+||+||+ |+++++++.. +.+.+.++++||+++...+.
T Consensus 9 ~~~I~v~~R~~e~~~~l~~~~g~~~~~~~~e~~~~aDiIiLaVk-P~~i~~vl~~---l~~~~~~~~~ivS~~agi~~-- 82 (245)
T TIGR00112 9 AYDIIVINRSPEKLAALAKELGIVASSDAQEAVKEADVVFLAVK-PQDLEEVLSE---LKSEKGKDKLLISIAAGVTL-- 82 (245)
T ss_pred CCeEEEEcCCHHHHHHHHHHcCcEEeCChHHHHhhCCEEEEEeC-HHHHHHHHHH---HhhhccCCCEEEEecCCCCH--
Confidence 36899999999999888654 88888999999999999999999 7899999875 55556677899977665444
Q ss_pred HHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecCC--cchHHHHHHHHHHH
Q psy764 93 QTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCGD--SGNGQVAKLCNNML 167 (286)
Q Consensus 93 ~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g~--~g~a~~~Kl~~n~~ 167 (286)
..+.+.+.. +..++ -+| ..+.....|...+..+. +++..+.++.+|+.+|. ++++.+ .....++--+.+.+
T Consensus 83 ~~l~~~~~~-~~~ivR~mP--n~~~~~~~g~t~~~~~~~~~~~~~~~v~~lf~~~G~-~~~v~E~~~~~~talsgsgPA~ 158 (245)
T TIGR00112 83 EKLSQLLGG-TRRVVRVMP--NTPAKVGAGVTAIAANANVSEEDRALVLALFKAVGE-VVELPEALMDAVTALSGSGPAY 158 (245)
T ss_pred HHHHHHcCC-CCeEEEECC--ChHHHHhCCeEEEecCCCCCHHHHHHHHHHHHhCCC-EEEECHHHcchHHhhccCcHHH
Confidence 344444432 12222 234 33444456664444443 35567899999999997 455554 45566666677788
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCC-cccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHh
Q psy764 168 LGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGR-CWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLAN 246 (286)
Q Consensus 168 ~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~ 246 (286)
.+.++.++.++ +.+.|++++...+++..+..+ ..+......-| ..+.+..-+|++++.. .++..+
T Consensus 159 ~~~~~~al~~~---~v~~Gl~~~~A~~lv~~~~~G~a~l~~~~~~~~----~~l~~~v~spgGtT~~-------gl~~Le 224 (245)
T TIGR00112 159 VFLFIEALADA---GVKQGLPRELALELAAQTVKGAAKLLEESGEHP----ALLKDQVTSPGGTTIA-------GLAVLE 224 (245)
T ss_pred HHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHcCCCCcHHHHH-------HHHHHH
Confidence 88888888887 899999999999998876322 22221111111 1122444467776665 556667
Q ss_pred hcCCCchHHHHHHHHHHHHH
Q psy764 247 RCTAQTDLSKLATSIYKRLM 266 (286)
Q Consensus 247 ~~g~~~p~~~~~~~~~~~a~ 266 (286)
+.|+.--+.+++.+.++++.
T Consensus 225 ~~~~~~~~~~a~~aa~~r~~ 244 (245)
T TIGR00112 225 EKGVRGAVIEAVEAAVRRSR 244 (245)
T ss_pred HCChHHHHHHHHHHHHHHhc
Confidence 78888888888888777663
|
This enzyme catalyzes the final step in proline biosynthesis. Among the four paralogs in Bacillus subtilis (proG, proH, proI, and comER), ComER is the most divergent and does not prevent proline auxotrophy from mutation of the other three. It is excluded from the seed and scores between the trusted and noise cutoffs. |
| >PTZ00431 pyrroline carboxylate reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.7e-14 Score=122.04 Aligned_cols=236 Identities=9% Similarity=0.072 Sum_probs=163.6
Q ss_pred CccHHHHHHHHhCCC----cEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 1 MISTLKLFFLQFQGH----DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+||+++++.|.++|. +++++||++++. +.....++.++++++|+||+|+| |+++++++.+ +.+.+.
T Consensus 13 ~mG~ai~~~l~~~~~~~~~~i~~~~~~~~~~------~~~~~~~~~~~~~~~D~Vilavk-p~~~~~vl~~---i~~~l~ 82 (260)
T PTZ00431 13 KMGSALAYGIENSNIIGKENIYYHTPSKKNT------PFVYLQSNEELAKTCDIIVLAVK-PDLAGKVLLE---IKPYLG 82 (260)
T ss_pred HHHHHHHHHHHhCCCCCcceEEEECCChhcC------CeEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH---HHhhcc
Confidence 389999999998873 499999987642 44556788899999999999999 6889999985 766666
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhc--CCceEeccCCCCHHhhhcCceEEEecC---CHhhHHHHHHHHHHhcCCeEec
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREK--QITFLDAPVSGGTKAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNIVHC 151 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~--g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~ 151 (286)
++.+|.++++++....+++ +... .++++ | +.|.....+. ++++.. +++..+.++.+|+.+|. ++.+
T Consensus 83 ~~~iIS~~aGi~~~~l~~~---~~~~~~vvr~m--P--n~p~~~g~g~-t~i~~~~~~~~~~~~~v~~l~~~~G~-~~~v 153 (260)
T PTZ00431 83 SKLLISICGGLNLKTLEEM---VGVEAKIVRVM--P--NTPSLVGQGS-LVFCANNNVDSTDKKKVIDIFSACGI-IQEI 153 (260)
T ss_pred CCEEEEEeCCccHHHHHHH---cCCCCeEEEEC--C--CchhHhccee-EEEEeCCCCCHHHHHHHHHHHHhCCc-EEEE
Confidence 6667777888876655543 2211 12232 2 4445555555 444443 45678899999999998 4555
Q ss_pred CC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCCCCC
Q psy764 152 GD--SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNGG 228 (286)
Q Consensus 152 g~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (286)
.+ .....++--+...+++.++.++.++ +.+.|++.++..+++..+. |...+......-| ..+.+..-+|+
T Consensus 154 ~E~~~d~~ta~~gsgPA~~~~~~~al~~~---~v~~Gl~~~~a~~l~~~~~~G~a~ll~~~~~~~----~~l~~~v~spg 226 (260)
T PTZ00431 154 KEKDMDIATAISGCGPAYVFLFIESLIDA---GVKNGLNRDVSKNLVLQTILGSVHMVKASDQPV----QQLKDDVCSPG 226 (260)
T ss_pred ChHHcchhhhhcCCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHhCCCCC
Confidence 54 4455555556677788888888888 9999999999999988763 2222221111111 12234555777
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 229 FKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 229 f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
+++.. .++..++.|+..-+.+++.+-++++.+.|
T Consensus 227 G~T~~-------gl~~le~~g~~~~~~~a~~aa~~r~~~l~ 260 (260)
T PTZ00431 227 GITIV-------GLYTLEKHAFKYTVMDAVESACQKSKSMH 260 (260)
T ss_pred hHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHhcC
Confidence 77666 55666788999899999999988887643
|
|
| >PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.1e-14 Score=120.97 Aligned_cols=177 Identities=19% Similarity=0.261 Sum_probs=125.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------cC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------EG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||..+|.+|+++|++|++||+++++++.+.+ .| ++.+++++ .+++||+||.|+|.
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aD~Vieavpe 93 (292)
T PRK07530 15 MGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTATDLE-DLADCDLVIEAATE 93 (292)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEeeCCHH-HhcCCCEEEEcCcC
Confidence 8999999999999999999999988766432 23 34566775 57899999999998
Q ss_pred hhHHHHHhcCCccccccCCCCCEEE-EcCCCCchHHHHHHHHHHh----cCCceEe-ccCCCCHHhhhcCceEEEecCCH
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVI-DSSTVDPQVPQTLSNLARE----KQITFLD-APVSGGTKAAQEATLTFMVGGDK 131 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivi-d~st~~p~~~~~~~~~~~~----~g~~~~~-~pv~g~~~~a~~g~l~~~~gg~~ 131 (286)
+.+++..+.+ ++.+.++++++|+ ++||..+. ++++.+.. .|++|++ .|+++.. .+....++++
T Consensus 94 ~~~~k~~~~~--~l~~~~~~~~ii~s~ts~~~~s---~la~~~~~~~r~~g~h~~~p~~~~~~v------ei~~g~~t~~ 162 (292)
T PRK07530 94 DETVKRKIFA--QLCPVLKPEAILATNTSSISIT---RLASATDRPERFIGIHFMNPVPVMKLV------ELIRGIATDE 162 (292)
T ss_pred CHHHHHHHHH--HHHhhCCCCcEEEEcCCCCCHH---HHHhhcCCcccEEEeeccCCcccCceE------EEeCCCCCCH
Confidence 7676655443 4777788888887 66666553 45554421 2567776 3433221 1122245789
Q ss_pred hhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHcc
Q psy764 132 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGM-NAKLLSDVINTS 199 (286)
Q Consensus 132 ~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl-~~~~~~~~~~~~ 199 (286)
+.++++.++++.+|+.++++++.+ -+++++++.. .++|++.+..+ |+ +++++-.++..+
T Consensus 163 ~~~~~~~~~~~~~gk~~v~~~d~p----g~i~nRl~~~----~~~ea~~~~~~-g~~~~~~iD~~~~~g 222 (292)
T PRK07530 163 ATFEAAKEFVTKLGKTITVAEDFP----AFIVNRILLP----MINEAIYTLYE-GVGSVEAIDTAMKLG 222 (292)
T ss_pred HHHHHHHHHHHHcCCeEEEecCcC----ChHHHHHHHH----HHHHHHHHHHh-CCCCHHHHHHHHHhC
Confidence 999999999999999999988754 5566666544 56788877776 54 788877776543
|
|
| >PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=7e-14 Score=120.98 Aligned_cols=181 Identities=14% Similarity=0.184 Sum_probs=134.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHH-----------HHHcC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQT-----------LAKEG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~-----------l~~~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||..+|.+|+++||+|++||++++..++ +.+.| ++.++++ +.+++||+||-|+|.
T Consensus 16 mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~~~~~-~~~~~~d~ViEav~E 94 (286)
T PRK07819 16 MGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRFTTDL-GDFADRQLVIEAVVE 94 (286)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEeeCCH-HHhCCCCEEEEeccc
Confidence 8999999999999999999999998766 44334 2367778 557999999999999
Q ss_pred hhHHHHHhcCCccccccC-CCCCEEEEcCCCCchHHHHHHHHHHhc--CCceEe-ccCCCCHHhhhcCceEEEecCCHhh
Q psy764 58 SQDVLDAYDGSDGILKHA-KPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLD-APVSGGTKAAQEATLTFMVGGDKSS 133 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l-~~g~ivid~st~~p~~~~~~~~~~~~~--g~~~~~-~pv~g~~~~a~~g~l~~~~gg~~~~ 133 (286)
+.+++..+++ .+.+.. +++.++++.||..|.+.........++ |.+|++ +|+++.. +++...+++++.
T Consensus 95 ~~~~K~~l~~--~l~~~~~~~~~il~snTS~~~~~~la~~~~~~~r~~g~hf~~P~~~~~lv------Elv~~~~T~~~~ 166 (286)
T PRK07819 95 DEAVKTEIFA--ELDKVVTDPDAVLASNTSSIPIMKLAAATKRPGRVLGLHFFNPVPVLPLV------ELVPTLVTSEAT 166 (286)
T ss_pred CHHHHHHHHH--HHHHhhCCCCcEEEECCCCCCHHHHHhhcCCCccEEEEecCCCcccCceE------EEeCCCCCCHHH
Confidence 9999888764 233344 789999998888888766554444444 667776 4555543 556666788999
Q ss_pred HHHHHHHHH-HhcCCeEecCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Q psy764 134 LEKAKPILK-CMGRNIVHCGD-SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS 200 (286)
Q Consensus 134 ~~~~~~ll~-~~g~~v~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~ 200 (286)
++++.+++. .+++.++++++ +|. . .|-+ ....++|++.+.+.--.+++++-.++..+.
T Consensus 167 ~~~~~~~~~~~lgk~pv~v~d~pGf--i----~nRi---~~~~~~Ea~~ll~eGv~~~~dID~~~~~g~ 226 (286)
T PRK07819 167 VARAEEFASDVLGKQVVRAQDRSGF--V----VNAL---LVPYLLSAIRMVESGFATAEDIDKAMVLGC 226 (286)
T ss_pred HHHHHHHHHHhCCCCceEecCCCCh--H----HHHH---HHHHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 999999988 59999998876 332 2 2332 344678999888765567888877776543
|
|
| >PRK07502 cyclohexadienyl dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.2e-13 Score=121.04 Aligned_cols=161 Identities=17% Similarity=0.306 Sum_probs=122.1
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHcCC--cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKEGA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~--~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||.+++..|.+.|+ +|++|||++++.+.+.+.|. ....++.++++++|+||+|+|. ....+++.. +.+.+++
T Consensus 17 mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViiavp~-~~~~~v~~~---l~~~l~~ 92 (307)
T PRK07502 17 IGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILCVPV-GASGAVAAE---IAPHLKP 92 (307)
T ss_pred HHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEECCCH-HHHHHHHHH---HHhhCCC
Confidence 79999999999995 89999999998888877774 3456788889999999999996 456777754 6667788
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEec-cCCCCHH-hhh-------cCceEEEe---cCCHhhHHHHHHHHHHhc
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDA-PVSGGTK-AAQ-------EATLTFMV---GGDKSSLEKAKPILKCMG 145 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~-pv~g~~~-~a~-------~g~l~~~~---gg~~~~~~~~~~ll~~~g 145 (286)
+.+|+|++++.+...+.+.+.+ ..+++|+++ |+.|++. +.. .|...+++ +++++.++.++++++.+|
T Consensus 93 ~~iv~dvgs~k~~~~~~~~~~~-~~~~~~v~~hPm~g~e~~G~~~a~~~l~~g~~~~l~~~~~~~~~~~~~~~~l~~~lG 171 (307)
T PRK07502 93 GAIVTDVGSVKASVIAAMAPHL-PEGVHFIPGHPLAGTEHSGPDAGFAELFENRWCILTPPEGTDPAAVARLTAFWRALG 171 (307)
T ss_pred CCEEEeCccchHHHHHHHHHhC-CCCCeEEeCCCCCCCcccchhhcCHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHHcC
Confidence 9999999998877776665544 346788986 9987542 111 23333343 567888999999999999
Q ss_pred CCeEecCCcchHHHHHHHHHHH
Q psy764 146 RNIVHCGDSGNGQVAKLCNNML 167 (286)
Q Consensus 146 ~~v~~~g~~g~a~~~Kl~~n~~ 167 (286)
.+++++++......+-++....
T Consensus 172 ~~~~~~~~~~hD~~~A~~s~lp 193 (307)
T PRK07502 172 ARVEEMDPEHHDLVLAITSHLP 193 (307)
T ss_pred CEEEEcCHHHHhHHHHHHhhHH
Confidence 9999988755666665554443
|
|
| >PRK06928 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.1e-14 Score=120.17 Aligned_cols=240 Identities=10% Similarity=0.038 Sum_probs=153.8
Q ss_pred ccHHHHHHHHhCC----CcEEEEcCCc-hHHHHHHHc--CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQG----HDVIVYDKNT-DASQTLAKE--GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G----~~V~~~dr~~-~~~~~l~~~--g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
||+++++.|.++| ++|.+|+|++ ++.+.+... +...+.+..++++++|+||+|+| ++.+++++.. +.+.
T Consensus 12 mG~ala~~L~~~g~~~~~~V~~~~r~~~~~~~~l~~~~~~~~~~~~~~e~~~~aDvVilavp-p~~~~~vl~~---l~~~ 87 (277)
T PRK06928 12 MADMIATKLLETEVATPEEIILYSSSKNEHFNQLYDKYPTVELADNEAEIFTKCDHSFICVP-PLAVLPLLKD---CAPV 87 (277)
T ss_pred HHHHHHHHHHHCCCCCcccEEEEeCCcHHHHHHHHHHcCCeEEeCCHHHHHhhCCEEEEecC-HHHHHHHHHH---HHhh
Confidence 8999999999998 7899999864 445555443 34556788899999999999999 6789998875 6677
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEec
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHC 151 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~ 151 (286)
+.++++||.+....+. .++.+.+.. ..++ -+| ..+.....|...+..+. +++..+.++.+|+.+|. ++++
T Consensus 88 l~~~~~ivS~~aGi~~--~~l~~~~~~--~~vvR~MP--N~~~~~g~g~t~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v 160 (277)
T PRK06928 88 LTPDRHVVSIAAGVSL--DDLLEITPG--LQVSRLIP--SLTSAVGVGTSLVAHAETVNEANKSRLEETLSHFSH-VMTI 160 (277)
T ss_pred cCCCCEEEEECCCCCH--HHHHHHcCC--CCEEEEeC--ccHHHHhhhcEEEecCCCCCHHHHHHHHHHHHhCCC-EEEE
Confidence 7788888876654333 245554432 2232 334 44555566764443332 35677899999999998 4455
Q ss_pred CC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHHccCCCcc-cccccCCCCCccccCCCCCCCCC
Q psy764 152 GD--SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKL-GMNAKLLSDVINTSSGRCW-SSEVYNPVPGVLSNVPASNNYNG 227 (286)
Q Consensus 152 g~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~-Gl~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~ 227 (286)
.+ .....++--+...+++.++.++.++ +.+. |+++++..+++..+..++. +...... -+..+.+..-+|
T Consensus 161 ~E~~~d~~tal~gsgPA~~~~~~~al~~a---~~~~ggl~~~~a~~l~~~~~~G~a~l~~~~~~----~p~~l~~~v~sp 233 (277)
T PRK06928 161 REENMDIASNLTSSSPGFIAAIFEEFAEA---AVRNSSLSDEEAFQFLNFALAGTGKLLVEEDY----TFSGTIERVATK 233 (277)
T ss_pred chhhCceeeeeecCHHHHHHHHHHHHHHH---HHHhCCCCHHHHHHHHHHHHHHHHHHHHccCC----CHHHHHHhCCCC
Confidence 43 2333333334445578888888888 8888 7999999999887632222 1111111 111223455578
Q ss_pred CccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 228 GFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 228 ~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
++++..+.+- .++ |++--+.+++..-++++.+
T Consensus 234 gGtT~~gl~~-------le~-~~~~~~~~~~~~a~~r~~~ 265 (277)
T PRK06928 234 GGITAEGAEV-------IQA-QLPQFFDELLDRTQKKYAS 265 (277)
T ss_pred ChHHHHHHHH-------HHH-HHHHHHHHHHHHHHHHHHH
Confidence 7776664333 333 5555566666666555544
|
|
| >PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.2e-13 Score=120.11 Aligned_cols=179 Identities=16% Similarity=0.214 Sum_probs=125.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH--------------cC-------------CcccCCHHHHhhcCcEEEE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK--------------EG-------------ANMALSLSTLASGAEFIIS 53 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~--------------~g-------------~~~~~s~~e~~~~adivi~ 53 (286)
.||+.+|..|+++|++|++||+++++++...+ .| +...++. +++++||+||.
T Consensus 13 ~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlVie 91 (291)
T PRK06035 13 VMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTSTSY-ESLSDADFIVE 91 (291)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEeeCCH-HHhCCCCEEEE
Confidence 38999999999999999999999987754321 12 1234455 67789999999
Q ss_pred ecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc----CCceEe-ccCCCCHHhhhcCceEEEec
Q psy764 54 MLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLD-APVSGGTKAAQEATLTFMVG 128 (286)
Q Consensus 54 ~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~----g~~~~~-~pv~g~~~~a~~g~l~~~~g 128 (286)
|+|.+..++..+.. .+.+.++++++++.. .+.....++++.+... |.+|.+ +|+++... ...+..+
T Consensus 92 av~e~~~~k~~~~~--~l~~~~~~~~il~S~--tsg~~~~~la~~~~~~~r~ig~hf~~P~~~~~~vE-v~~g~~T---- 162 (291)
T PRK06035 92 AVPEKLDLKRKVFA--ELERNVSPETIIASN--TSGIMIAEIATALERKDRFIGMHWFNPAPVMKLIE-VVRAALT---- 162 (291)
T ss_pred cCcCcHHHHHHHHH--HHHhhCCCCeEEEEc--CCCCCHHHHHhhcCCcccEEEEecCCCcccCccEE-EeCCCCC----
Confidence 99987655544332 255667778877643 3334445666655432 556665 55555432 1222221
Q ss_pred CCHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHcc
Q psy764 129 GDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLG-MNAKLLSDVINTS 199 (286)
Q Consensus 129 g~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~G-l~~~~~~~~~~~~ 199 (286)
+++.++++.++++.+|+.++++++.+.....|+++|+ ++|++.+.+. | .+++++-.++..+
T Consensus 163 -~~e~~~~~~~~~~~lgk~~v~v~d~pgfv~nRl~~~~--------~~ea~~~~~~-g~a~~~~iD~~~~~~ 224 (291)
T PRK06035 163 -SEETFNTTVELSKKIGKIPIEVADVPGFFTTRFIEGW--------LLEAIRSFEI-GIATIKDIDEMCKLA 224 (291)
T ss_pred -CHHHHHHHHHHHHHcCCeEEEeCCCCCeeHHHHHHHH--------HHHHHHHHHc-CCCCHHHHHHHHhhc
Confidence 7899999999999999999999988888888887775 5788888766 6 5788887776544
|
|
| >PRK07634 pyrroline-5-carboxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.4e-12 Score=109.21 Aligned_cols=185 Identities=11% Similarity=0.085 Sum_probs=129.9
Q ss_pred ccHHHHHHHHhCCC---c-EEEEcC-CchHHHHHHH-cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQGH---D-VIVYDK-NTDASQTLAK-EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~---~-V~~~dr-~~~~~~~l~~-~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||++++..|.++|+ + +++|+| ++++.+.+.+ .++..+.++.++++++|+||+|+|+ +..++++.. +.+.+
T Consensus 15 mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DiViiavp~-~~~~~v~~~---l~~~~ 90 (245)
T PRK07634 15 MAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYNVSTTTDWKQHVTSVDTIVLAMPP-SAHEELLAE---LSPLL 90 (245)
T ss_pred HHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcCcEEeCChHHHHhcCCEEEEecCH-HHHHHHHHH---HHhhc
Confidence 78999999998873 3 778887 4778888765 4777778899999999999999995 678888874 55555
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceE--EEecCCHhhHHHHHHHHHHhcCCeEecCC
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT--FMVGGDKSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~--~~~gg~~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
+ +++||+++...... .+.+.+.........+|.+.. ....+... +-..++++..+.++.+|+.+|..++ +.+
T Consensus 91 ~-~~~vis~~~gi~~~--~l~~~~~~~~~v~r~~Pn~a~--~v~~g~~~~~~~~~~~~~~~~~v~~lf~~~G~~~~-~~e 164 (245)
T PRK07634 91 S-NQLVVTVAAGIGPS--YLEERLPKGTPVAWIMPNTAA--EIGKSISLYTMGQSVNETHKETLQLILKGIGTSQL-CTE 164 (245)
T ss_pred c-CCEEEEECCCCCHH--HHHHHcCCCCeEEEECCcHHH--HHhcCCeEEeeCCCCCHHHHHHHHHHHHhCCCEEE-ECH
Confidence 4 67888876654443 344444321122335564433 33344322 2334577888999999999998664 543
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 154 --SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 154 --~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
.....++--+...+++.++.++.++ +.+.|+++++..+++...
T Consensus 165 ~~~~~~~a~~gs~pa~~~~~~~a~~~~---~~~~Gl~~~~a~~~~~~~ 209 (245)
T PRK07634 165 EEVHQLTAVTGSAPAFLYYFAESLIEA---TKSYGVDEETAKHLVIQM 209 (245)
T ss_pred HHcchHHhhhcchHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHH
Confidence 4455555556666777777777777 899999999998888765
|
|
| >PRK12921 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=5.4e-12 Score=110.49 Aligned_cols=246 Identities=13% Similarity=0.115 Sum_probs=150.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc-------------ccCCHHHHhhcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN-------------MALSLSTLASGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------------~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||+.+|..|+++||+|++|+| +++.+.+.+.|.. ..++..++.+.+|+||+|+|+ .++++++..
T Consensus 11 iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vilavk~-~~~~~~~~~- 87 (305)
T PRK12921 11 VGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVVPGPVITDPEELTGPFDLVILAVKA-YQLDAAIPD- 87 (305)
T ss_pred HHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEecceeecCHHHccCCCCEEEEEecc-cCHHHHHHH-
Confidence 799999999999999999999 7888887765532 234566667899999999996 467888764
Q ss_pred ccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc----CCceEeccCCCCHHhhhcCceEEEecC----CHhhHHHHHHH
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSGGTKAAQEATLTFMVGG----DKSSLEKAKPI 140 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g~l~~~~gg----~~~~~~~~~~l 140 (286)
+.+.+.++++||.+.+.. .....+.+.+.+. ++.++.++..+.-.-...+.-.+.+|. ..+..+.+..+
T Consensus 88 --l~~~~~~~~~ii~~~nG~-~~~~~l~~~~~~~~v~~g~~~~~~~~~~~g~v~~~~~~~~~iG~~~~~~~~~~~~l~~~ 164 (305)
T PRK12921 88 --LKPLVGEDTVIIPLQNGI-GQLEQLEPYFGRERVLGGVVFISAQLNGDGVVVQRADHRLTFGEIPGQRSERTRAVRDA 164 (305)
T ss_pred --HHhhcCCCCEEEEeeCCC-ChHHHHHHhCCcccEEEEEEEEEEEECCCeEEEEcCCCcEEEcCCCCCcCHHHHHHHHH
Confidence 666677788888765543 2223444444332 233444443331111111222344443 23455677778
Q ss_pred HHHhcCCeEecCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCC--HHHHHHHHH
Q psy764 141 LKCMGRNIVHCGDSGNGQVAKLCNNMLL---------------------GVTMMGVAEAMNLGVKLGMN--AKLLSDVIN 197 (286)
Q Consensus 141 l~~~g~~v~~~g~~g~a~~~Kl~~n~~~---------------------~~~~~~~~Ea~~l~~~~Gl~--~~~~~~~~~ 197 (286)
|+..+..+....++-...-.|++.|... ......+.|+..++++.|++ .+.+.+.+.
T Consensus 165 l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~a~~~~~~g~~~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~ 244 (305)
T PRK12921 165 LAGARLEVVLSENIRQDIWRKLLFNAVMNGMTALGRATVGGILSRPGGRDLARALLRECLAVARAEGAPLRDDVVEEIVK 244 (305)
T ss_pred HHhCCCCceecHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHhCccHHHHHHHHHHHHHHHHHHcCCCCChhHHHHHHH
Confidence 8887776666666777778888877543 23456789999999999976 344444333
Q ss_pred ccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 198 TSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 198 ~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
.-... ...+ .+.+.++.. .+... -++. =...+.++++++|+++|..+.+++++...
T Consensus 245 ~~~~~--~~~~---~sSm~~D~~-~gr~t---Eid~---i~G~vv~~a~~~gv~~P~~~~l~~~~~~~ 300 (305)
T PRK12921 245 IFAGA--PGDM---KTSMLRDME-KGRPL---EIDH---LQGVLLRRARAHGIPTPILDTVYALLKAY 300 (305)
T ss_pred HHhcc--CCCC---CcHHHHHHH-cCCcc---cHHH---HHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 21000 0000 001111110 11100 0111 12358999999999999999999998654
|
|
| >PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1 | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.5e-12 Score=108.82 Aligned_cols=157 Identities=18% Similarity=0.318 Sum_probs=111.9
Q ss_pred HHHHHHhCC--CcEEEEcCCchHHHHHHHcCCcccCC-HHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEE
Q psy764 6 KLFFLQFQG--HDVIVYDKNTDASQTLAKEGANMALS-LSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 6 lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g~~~~~s-~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
+|+.|.++| ++|++||++++..+...+.|+.-..+ ..+.++++|+||+|+| ...+.+++.. +.+.+++|.+|+
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~DlvvlavP-~~~~~~~l~~---~~~~~~~~~iv~ 76 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTDIEAVEDADLVVLAVP-VSAIEDVLEE---IAPYLKPGAIVT 76 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESHHHHGGCCSEEEE-S--HHHHHHHHHH---HHCGS-TTSEEE
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCCHhHhcCCCEEEEcCC-HHHHHHHHHH---hhhhcCCCcEEE
Confidence 578899999 68999999999988887888654332 2678999999999999 4678888875 888899999999
Q ss_pred EcCCCCchHHHHHHHHHHhcCCceEe-ccCCCC----H----HhhhcCceEEEecC---CHhhHHHHHHHHHHhcCCeEe
Q psy764 83 DSSTVDPQVPQTLSNLAREKQITFLD-APVSGG----T----KAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNIVH 150 (286)
Q Consensus 83 d~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~----~----~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~ 150 (286)
|.+++.-...+.+.+.+. .+..|+. .|++|. + ...-.|...+++-+ +.+.++.++.+++.+|.+++.
T Consensus 77 Dv~SvK~~~~~~~~~~~~-~~~~~v~~HPM~G~e~~G~~~a~~~lf~g~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~ 155 (258)
T PF02153_consen 77 DVGSVKAPIVEAMERLLP-EGVRFVGGHPMAGPEKSGPEAADADLFEGRNWILCPGEDTDPEALELVEELWEALGARVVE 155 (258)
T ss_dssp E--S-CHHHHHHHHHHHT-SSGEEEEEEESCSTSSSSGGG-TTTTTTTSEEEEEECTTS-HHHHHHHHHHHHHCT-EEEE
T ss_pred EeCCCCHHHHHHHHHhcC-cccceeecCCCCCCccccchhhcccccCCCeEEEeCCCCChHHHHHHHHHHHHHCCCEEEE
Confidence 999999888887777655 6778885 588887 2 22235666777744 357889999999999999998
Q ss_pred cCCcchHHHHHHHHHHH
Q psy764 151 CGDSGNGQVAKLCNNML 167 (286)
Q Consensus 151 ~g~~g~a~~~Kl~~n~~ 167 (286)
+.+-.+-..+-+++.+.
T Consensus 156 ~~~eeHD~~~A~vshlp 172 (258)
T PF02153_consen 156 MDAEEHDRIMAYVSHLP 172 (258)
T ss_dssp --HHHHHHHHHHHTHHH
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 87655656665554443
|
3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D. |
| >COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.2e-12 Score=108.66 Aligned_cols=159 Identities=17% Similarity=0.256 Sum_probs=118.2
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchH--HHHHHHcCCccc--CCH-HHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDA--SQTLAKEGANMA--LSL-STLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~--~~~l~~~g~~~~--~s~-~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+||..+|+.|.++|+.|.+|+++... .+...+.|+.-. .+. .+.+..+|+||+|||- .++.+++.. +.+.+
T Consensus 13 liG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~VivavPi-~~~~~~l~~---l~~~l 88 (279)
T COG0287 13 LMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVAVPI-EATEEVLKE---LAPHL 88 (279)
T ss_pred hHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEeccH-HHHHHHHHH---hcccC
Confidence 48999999999999988777665544 444444555332 333 6777889999999995 578888875 77789
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCH--HhhhcCceEEEecCC---HhhHHHHHHHHHHhcCCeE
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGT--KAAQEATLTFMVGGD---KSSLEKAKPILKCMGRNIV 149 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~--~~a~~g~l~~~~gg~---~~~~~~~~~ll~~~g~~v~ 149 (286)
++|.+|+|.+++.-...+.+.+...+.. +|+. .|++|++ .....+..++++-++ .+.++++..+++.+|.+++
T Consensus 89 ~~g~iv~Dv~S~K~~v~~a~~~~~~~~~-~~vg~HPM~G~~~~~~lf~~~~~vltp~~~~~~~~~~~~~~~~~~~ga~~v 167 (279)
T COG0287 89 KKGAIVTDVGSVKSSVVEAMEKYLPGDV-RFVGGHPMFGPEADAGLFENAVVVLTPSEGTEKEWVEEVKRLWEALGARLV 167 (279)
T ss_pred CCCCEEEecccccHHHHHHHHHhccCCC-eeEecCCCCCCcccccccCCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 9999999999998888887777665555 7886 5999984 344456656666553 4678899999999999999
Q ss_pred ecCCcchHHHHHHHH
Q psy764 150 HCGDSGNGQVAKLCN 164 (286)
Q Consensus 150 ~~g~~g~a~~~Kl~~ 164 (286)
++.+-.+-..+-.++
T Consensus 168 ~~~~eeHD~~~a~vs 182 (279)
T COG0287 168 EMDAEEHDRVMAAVS 182 (279)
T ss_pred EcChHHHhHHHHHHH
Confidence 988655555554443
|
|
| >PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.4e-12 Score=109.54 Aligned_cols=183 Identities=18% Similarity=0.270 Sum_probs=122.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-------------------------cCCcccCCHHHHhhcCcEEEEec
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-------------------------EGANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------------------------~g~~~~~s~~e~~~~adivi~~v 55 (286)
+||+.+|..|+++|++|++||+++++++++.+ .++..++++++++++||+||.|+
T Consensus 13 ~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~d~~~a~~~aDlVieav 92 (287)
T PRK08293 13 VLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITLTTDLAEAVKDADLVIEAV 92 (287)
T ss_pred HHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEEeCCHHHHhcCCCEEEEec
Confidence 38999999999999999999999887655432 13446788999999999999999
Q ss_pred CChhHHH-HHhcCCccccccCCCCCEEE-EcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEe---cCC
Q psy764 56 PASQDVL-DAYDGSDGILKHAKPGVIVI-DSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMV---GGD 130 (286)
Q Consensus 56 ~~~~~~~-~v~~~~~~l~~~l~~g~ivi-d~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~---gg~ 130 (286)
|.+.+++ .++.. +.+.++++.+|+ ++||..+.. +++.+ ++.-+|+..-.+..+. ...++.++ ..+
T Consensus 93 pe~~~~k~~~~~~---l~~~~~~~~ii~sntSt~~~~~---~~~~~-~~~~r~vg~Hf~~p~~---~~~lvevv~~~~t~ 162 (287)
T PRK08293 93 PEDPEIKGDFYEE---LAKVAPEKTIFATNSSTLLPSQ---FAEAT-GRPEKFLALHFANEIW---KNNTAEIMGHPGTD 162 (287)
T ss_pred cCCHHHHHHHHHH---HHhhCCCCCEEEECcccCCHHH---HHhhc-CCcccEEEEcCCCCCC---cCCeEEEeCCCCCC
Confidence 9765544 44543 666677788874 455554433 33332 2233455321122111 22334444 446
Q ss_pred HhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Q psy764 131 KSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS 200 (286)
Q Consensus 131 ~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~ 200 (286)
+++++++.++++.+|+.++.+..-..+... |=+ ....++|++.+.+.--.+++++-.++..+.
T Consensus 163 ~~~~~~~~~~~~~~Gk~pv~v~~d~pgfi~----nRi---~~~~~~ea~~l~~~g~a~~~~iD~a~~~~~ 225 (287)
T PRK08293 163 PEVFDTVVAFAKAIGMVPIVLKKEQPGYIL----NSL---LVPFLSAALALWAKGVADPETIDKTWMIAT 225 (287)
T ss_pred HHHHHHHHHHHHHcCCeEEEecCCCCCHhH----HHH---HHHHHHHHHHHHHcCCCCHHHHHHHHHhcc
Confidence 889999999999999988888632233333 322 234579999998876678999988876553
|
|
| >PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=108.13 Aligned_cols=188 Identities=20% Similarity=0.242 Sum_probs=131.0
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c---------CCcccCCHHHHhhcCcEEEEecCChhH
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E---------GANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~---------g~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
.||..+|.+|+.+||+|++||++++..+.+.+ . .+..++++++++++||+||-|+|...+
T Consensus 17 ~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~l~~av~~aDlViEavpE~l~ 96 (321)
T PRK07066 17 VIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVATIEACVADADFIQESAPEREA 96 (321)
T ss_pred HHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecCCHHHHhcCCCEEEECCcCCHH
Confidence 38999999999999999999999886554322 1 235677899999999999999999888
Q ss_pred HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHhhHHHH
Q psy764 61 VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKSSLEKA 137 (286)
Q Consensus 61 ~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~ 137 (286)
++..+.. .+.+.++++. ||.+||. +....++++.+. +.-+++-+=.+..|... .++=++.| +++.++++
T Consensus 97 vK~~lf~--~l~~~~~~~a-IlaSnTS-~l~~s~la~~~~-~p~R~~g~HffnP~~~~---pLVEVv~g~~T~~e~~~~~ 168 (321)
T PRK07066 97 LKLELHE--RISRAAKPDA-IIASSTS-GLLPTDFYARAT-HPERCVVGHPFNPVYLL---PLVEVLGGERTAPEAVDAA 168 (321)
T ss_pred HHHHHHH--HHHHhCCCCe-EEEECCC-ccCHHHHHHhcC-CcccEEEEecCCccccC---ceEEEeCCCCCCHHHHHHH
Confidence 8887763 4666666666 6666665 444556666553 32344433222222211 23334444 58899999
Q ss_pred HHHHHHhcCCeEecC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcc
Q psy764 138 KPILKCMGRNIVHCG-DSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCW 204 (286)
Q Consensus 138 ~~ll~~~g~~v~~~g-~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~ 204 (286)
..+++.+|+.++.+. +. -| .+.|-+. ...+.|++.+.++-..+++++-.++..+.+..|
T Consensus 169 ~~f~~~lGk~pV~v~kd~-pG----Fi~NRl~---~a~~~EA~~lv~eGvas~edID~a~~~g~g~r~ 228 (321)
T PRK07066 169 MGIYRALGMRPLHVRKEV-PG----FIADRLL---EALWREALHLVNEGVATTGEIDDAIRFGAGIRW 228 (321)
T ss_pred HHHHHHcCCEeEecCCCC-cc----HHHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCCc
Confidence 999999999888884 42 22 2234433 346799999988877899999999887766544
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-12 Score=119.30 Aligned_cols=153 Identities=15% Similarity=0.183 Sum_probs=110.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh-cCcEEEEecCChhHHHHHhcCCccccc-cCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS-GAEFIISMLPASQDVLDAYDGSDGILK-HAKPG 78 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adivi~~v~~~~~~~~v~~~~~~l~~-~l~~g 78 (286)
+||..+|++|.+.|++|.+|||+... +...+.|+....++.+++. .+|+||+|+|. ..+.+++.. +.. .+++|
T Consensus 379 ~mG~slA~~L~~~G~~V~~~dr~~~~-~~a~~~Gv~~~~~~~el~~~~aDvVILavP~-~~~~~vi~~---l~~~~lk~g 453 (667)
T PLN02712 379 NFGQFLAKTMVKQGHTVLAYSRSDYS-DEAQKLGVSYFSDADDLCEEHPEVILLCTSI-LSTEKVLKS---LPFQRLKRS 453 (667)
T ss_pred HHHHHHHHHHHHCcCEEEEEECChHH-HHHHHcCCeEeCCHHHHHhcCCCEEEECCCh-HHHHHHHHH---HHHhcCCCC
Confidence 38999999999999999999999654 4455668877788888876 58999999995 678888764 443 47789
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcC--ceE-----EEecCCHhhHHH---HHHHHHHhcCC
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEA--TLT-----FMVGGDKSSLEK---AKPILKCMGRN 147 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g--~l~-----~~~gg~~~~~~~---~~~ll~~~g~~ 147 (286)
++|+|++++.....+.+.+ +...+..|+ .+|++|.... ..| .+. .+++++.+..++ +..+++.+|.+
T Consensus 454 ~ivvDv~SvK~~~~~~~~~-~l~~~~~~v~~HPm~G~e~~-~~G~~~~~~lf~~~~v~~~~~~~~~~~~l~~l~~~lGa~ 531 (667)
T PLN02712 454 TLFVDVLSVKEFPRNLFLQ-HLPQDFDILCTHPMFGPESG-KNGWNNLAFVFDKVRIGSDDRRVSRCDSFLDIFAREGCR 531 (667)
T ss_pred cEEEECCCccHHHHHHHHH-hccCCCceEeeCCCCCcccc-ccchhhhhhhccCcEeCCCcchHHHHHHHHHHHHHcCCE
Confidence 9999999998444444443 344577788 7899997754 111 112 334566555444 45899999999
Q ss_pred eEecCCcchHHHH
Q psy764 148 IVHCGDSGNGQVA 160 (286)
Q Consensus 148 v~~~g~~g~a~~~ 160 (286)
++.+.+-..-..+
T Consensus 532 vv~ms~eeHD~~~ 544 (667)
T PLN02712 532 MVEMSCAEHDWHA 544 (667)
T ss_pred EEEeCHHHHHHHH
Confidence 9988864444333
|
|
| >PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.9e-12 Score=103.64 Aligned_cols=135 Identities=20% Similarity=0.242 Sum_probs=88.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------------------CCcccCCHHHHhhcCcEEEEecCChh--
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------------------GANMALSLSTLASGAEFIISMLPASQ-- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~adivi~~v~~~~-- 59 (286)
+|.++|..|+++||+|++||.++++++.+++. +.+++.+..++++++|++|+|||+|.
T Consensus 11 vGl~~A~~lA~~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t~~~~~ai~~adv~~I~VpTP~~~ 90 (185)
T PF03721_consen 11 VGLPLAAALAEKGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRATTDIEEAIKDADVVFICVPTPSDE 90 (185)
T ss_dssp THHHHHHHHHHTTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEESEHHHHHHH-SEEEE----EBET
T ss_pred chHHHHHHHHhCCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhhhhhhhhhhccceEEEecCCCccc
Confidence 79999999999999999999999998887652 24667788999999999999999774
Q ss_pred -------HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHH-HHHhcC-----CceEeccCCCCHHhhh---cCce
Q psy764 60 -------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSN-LAREKQ-----ITFLDAPVSGGTKAAQ---EATL 123 (286)
Q Consensus 60 -------~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~-~~~~~g-----~~~~~~pv~g~~~~a~---~g~l 123 (286)
.+++++.. +.+.++++++||..||+.|.+++++.. .+++.+ +.+..+|.+-.+..+. ...-
T Consensus 91 ~~~~Dls~v~~a~~~---i~~~l~~~~lvV~~STvppGtt~~~~~~ile~~~~~~~~f~la~~PErl~~G~a~~d~~~~~ 167 (185)
T PF03721_consen 91 DGSPDLSYVESAIES---IAPVLRPGDLVVIESTVPPGTTEELLKPILEKRSGKKEDFHLAYSPERLREGRAIEDFRNPP 167 (185)
T ss_dssp TTSBETHHHHHHHHH---HHHHHCSCEEEEESSSSSTTHHHHHHHHHHHHHCCTTTCEEEEE------TTSHHHHHHSSS
T ss_pred cCCccHHHHHHHHHH---HHHHHhhcceEEEccEEEEeeehHhhhhhhhhhcccccCCeEEECCCccCCCCcchhccCCC
Confidence 25555553 788889999999999999999996554 444433 3556677554433332 2222
Q ss_pred EEEecCCHhhHH-HHHH
Q psy764 124 TFMVGGDKSSLE-KAKP 139 (286)
Q Consensus 124 ~~~~gg~~~~~~-~~~~ 139 (286)
.++.|.+++..+ ++++
T Consensus 168 rvV~G~~~~~~~~~~~~ 184 (185)
T PF03721_consen 168 RVVGGCDDESAEERLKE 184 (185)
T ss_dssp EEEEEESSHHHHHHHHH
T ss_pred EEEEeCCcHHHHHHHhc
Confidence 566676654333 5544
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D .... |
| >PRK14806 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.2e-11 Score=120.75 Aligned_cols=172 Identities=15% Similarity=0.232 Sum_probs=126.2
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHHcCCc--ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAKEGAN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g~~--~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||.++++.|.++| ++|++|||++++.+.+.+.|+. ...+..++++++|+||+|+|. +.+++++.. +.+.+++
T Consensus 14 mG~ala~~l~~~G~~~~V~~~d~~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl~~---l~~~~~~ 89 (735)
T PRK14806 14 IGGSFAKALRERGLAREVVAVDRRAKSLELAVSLGVIDRGEEDLAEAVSGADVIVLAVPV-LAMEKVLAD---LKPLLSE 89 (735)
T ss_pred HHHHHHHHHHhcCCCCEEEEEECChhHHHHHHHCCCCCcccCCHHHHhcCCCEEEECCCH-HHHHHHHHH---HHHhcCC
Confidence 8999999999999 4899999999998887777764 455788889999999999995 688888874 7777788
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHh--------hhcCceEEEec---CCHhhHHHHHHHHHHhc
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKA--------AQEATLTFMVG---GDKSSLEKAKPILKCMG 145 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~--------a~~g~l~~~~g---g~~~~~~~~~~ll~~~g 145 (286)
+.+|+|+++++....+.+.+.+....++|+ ..|++|++.. .-.+..++++. ++++.++.++++|+.+|
T Consensus 90 ~~ii~d~~svk~~~~~~l~~~~~~~~~r~~~~hPm~G~~~~g~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~G 169 (735)
T PRK14806 90 HAIVTDVGSTKGNVVDAARAVFGELPAGFVPGHPIAGSEKSGVHAANADLFRNHKVILTPLAETDPAALARVDRLWRAVG 169 (735)
T ss_pred CcEEEEcCCCchHHHHHHHHhccccCCeEEecCCcCcCCcchhhhhhhHHhCCCeEEEECCCCCCHHHHHHHHHHHHHcC
Confidence 899999999998888887777655556766 5788866431 11233234443 46778899999999999
Q ss_pred CCeEecCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy764 146 RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEA 178 (286)
Q Consensus 146 ~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea 178 (286)
.+++++.+...-..+-+++... +.....+.|+
T Consensus 170 ~~~~~~~~~~hD~~~a~~~~~p-h~~~~~l~~~ 201 (735)
T PRK14806 170 ADVLHMDVAHHDEVLAATSHLP-HLLAFSLVDQ 201 (735)
T ss_pred CEEEEcCHHHHhHHHHHhcchH-HHHHHHHHHH
Confidence 9888887644444444333332 2233344555
|
|
| >PLN02256 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.2e-11 Score=104.98 Aligned_cols=156 Identities=12% Similarity=0.110 Sum_probs=114.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccc-cccCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGI-LKHAKPG 78 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l-~~~l~~g 78 (286)
+||.++++.|.+.|++|++||+++.. +...+.|+....+..+++ .++|+||+|+|. .++.+++.. + .+.++++
T Consensus 46 ~mG~slA~~L~~~G~~V~~~d~~~~~-~~a~~~gv~~~~~~~e~~~~~aDvVilavp~-~~~~~vl~~---l~~~~l~~~ 120 (304)
T PLN02256 46 NFGQFLAKTFVKQGHTVLATSRSDYS-DIAAELGVSFFRDPDDFCEEHPDVVLLCTSI-LSTEAVLRS---LPLQRLKRS 120 (304)
T ss_pred HHHHHHHHHHHhCCCEEEEEECccHH-HHHHHcCCeeeCCHHHHhhCCCCEEEEecCH-HHHHHHHHh---hhhhccCCC
Confidence 38999999999999999999999743 444456887778888886 479999999995 678888875 5 4567889
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHh--hhcCceEEEec-------CCHhhHHHHHHHHHHhcCCe
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKA--AQEATLTFMVG-------GDKSSLEKAKPILKCMGRNI 148 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~--a~~g~l~~~~g-------g~~~~~~~~~~ll~~~g~~v 148 (286)
++|+|.++++......+.+.+. .+..|+. +|++|.... ...+.-.++.. .+++.++.++++++.+|.++
T Consensus 121 ~iviDv~SvK~~~~~~~~~~l~-~~~~~V~~HPmaG~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~l~~~lGa~v 199 (304)
T PLN02256 121 TLFVDVLSVKEFPKNLLLQVLP-EEFDILCTHPMFGPESGKGGWAGLPFVYDKVRIGDEGEREARCERFLDIFEEEGCRM 199 (304)
T ss_pred CEEEecCCchHHHHHHHHHhCC-CCCeEEecCCCCCCCCCccccCCCeEEEecceecCCCCCHHHHHHHHHHHHHCCCEE
Confidence 9999999987666666665543 3556774 688887643 22233222222 25678889999999999999
Q ss_pred EecCCcchHHHHHH
Q psy764 149 VHCGDSGNGQVAKL 162 (286)
Q Consensus 149 ~~~g~~g~a~~~Kl 162 (286)
+.+.+...-..+-.
T Consensus 200 ~~~~~eeHD~~vA~ 213 (304)
T PLN02256 200 VEMSCEEHDRYAAG 213 (304)
T ss_pred EEeCHHHHhHHHHh
Confidence 99886555555443
|
|
| >TIGR01915 npdG NADPH-dependent F420 reductase | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=102.47 Aligned_cols=154 Identities=15% Similarity=0.205 Sum_probs=103.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------CCc---ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------GAN---MALSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------g~~---~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||++++..|+++||+|.+|+|++++.+.+... |.. ...+..++++++|+||+|+|. +++++++..
T Consensus 12 mG~ala~~L~~~G~~V~v~~r~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~ea~~~aDvVilavp~-~~~~~~l~~--- 87 (219)
T TIGR01915 12 QGKGLALRLAKAGNKIIIGSRDLEKAEEAAAKALEELGHGGSDIKVTGADNAEAAKRADVVILAVPW-DHVLKTLES--- 87 (219)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCHHHHHHHHHHHHhhccccCCCceEEEeChHHHHhcCCEEEEECCH-HHHHHHHHH---
Confidence 78999999999999999999999988776542 221 224677889999999999995 677888764
Q ss_pred ccccCCCCCEEEEcCCCCch---------------HHHHHHHHHHhcCCceEec-cCCCCHH----hhhcCceEEEecCC
Q psy764 71 ILKHAKPGVIVIDSSTVDPQ---------------VPQTLSNLAREKQITFLDA-PVSGGTK----AAQEATLTFMVGGD 130 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~---------------~~~~~~~~~~~~g~~~~~~-pv~g~~~----~a~~g~l~~~~gg~ 130 (286)
+.+.+ ++++|||++...+. .++.+++.+.. +.+++-+ |...... ....+.-.+++|-|
T Consensus 88 l~~~l-~~~vvI~~~ngi~~~~~~~~~~~~~~~~s~~e~l~~~~p~-~~~VVka~~~~~a~~~~~~~~~~~~~~~v~Gdd 165 (219)
T TIGR01915 88 LRDEL-SGKLVISPVVPLASDGGKGARYLPPEEGSAAEQAAALLPE-TSRVVAAFHNLSAVLLQDVDDEVDCDVLVCGDD 165 (219)
T ss_pred HHHhc-cCCEEEEeccCceecCCCCceecCCCCCcHHHHHHHhCCC-CCeEeeccccCCHHHhcCCCCCCCCCEEEECCC
Confidence 54444 45899999765442 12344444422 1334433 3222111 11123334555556
Q ss_pred HhhHHHHHHHHHHh-cCCeEecCCcchHHHHH
Q psy764 131 KSSLEKAKPILKCM-GRNIVHCGDSGNGQVAK 161 (286)
Q Consensus 131 ~~~~~~~~~ll~~~-g~~v~~~g~~g~a~~~K 161 (286)
+++.+.+..|.+.+ |..++.+|+...+-.+-
T Consensus 166 ~~ak~~v~~L~~~~~G~~~vd~G~l~~a~~~e 197 (219)
T TIGR01915 166 EEAKEVVAELAGRIDGLRALDAGPLENAAIVE 197 (219)
T ss_pred HHHHHHHHHHHHhcCCCCcccCCchhhHHHHH
Confidence 77888999999999 99999999865555443
|
This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase. |
| >PRK06522 2-dehydropantoate 2-reductase; Reviewed | Back alignment and domain information |
|---|
Probab=99.34 E-value=8.4e-11 Score=102.88 Aligned_cols=245 Identities=14% Similarity=0.137 Sum_probs=145.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-----------cCCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-----------ALSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----------~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||+.+|..|.++||+|++|+|++++.+.+.+.|... .+++.++ +.+|+||+|+|. .++++++..
T Consensus 11 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~d~vila~k~-~~~~~~~~~--- 85 (304)
T PRK06522 11 IGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLEDGEITVPVLAADDPAEL-GPQDLVILAVKA-YQLPAALPS--- 85 (304)
T ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCcccCCceeecccCCCChhHc-CCCCEEEEeccc-ccHHHHHHH---
Confidence 799999999999999999999988888887767532 4556665 899999999996 577888875
Q ss_pred ccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCC----ceEeccCC--CCHHhhhcCceEEEecC-C--HhhHHHHHHHH
Q psy764 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI----TFLDAPVS--GGTKAAQEATLTFMVGG-D--KSSLEKAKPIL 141 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~----~~~~~pv~--g~~~~a~~g~l~~~~gg-~--~~~~~~~~~ll 141 (286)
+.+.+.++++||.+.+.. ...+.+.+.+....+ .+..+-.. +.......+. +.+|. + .+..+.+.++|
T Consensus 86 l~~~l~~~~~iv~~~nG~-~~~~~l~~~~~~~~i~~~~~~~~~~~~~p~~v~~~~~g~--~~ig~~~~~~~~~~~l~~~l 162 (304)
T PRK06522 86 LAPLLGPDTPVLFLQNGV-GHLEELAAYIGPERVLGGVVTHAAELEGPGVVRHTGGGR--LKIGEPDGESAAAEALADLL 162 (304)
T ss_pred HhhhcCCCCEEEEecCCC-CcHHHHHHhcCcccEEEEEEEEeeEecCCCEEEEcCCCC--EEEeCCCCCcHHHHHHHHHH
Confidence 777777777787766543 222334443332211 11111111 1111122233 33333 2 23356677788
Q ss_pred HHhcCCeEecCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHc
Q psy764 142 KCMGRNIVHCGDSGNGQVAKLCNNML---------------------LGVTMMGVAEAMNLGVKLGMN--AKLLSDVINT 198 (286)
Q Consensus 142 ~~~g~~v~~~g~~g~a~~~Kl~~n~~---------------------~~~~~~~~~Ea~~l~~~~Gl~--~~~~~~~~~~ 198 (286)
+..+.++....++-...-.|++.|.. .......+.|+..++++.|++ .+.+.+.+..
T Consensus 163 ~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~~~~ 242 (304)
T PRK06522 163 NAAGLDVEWSPDIRTEIWRKLWVNCVINPLTALLGCTNGELLADPDYRALIRALMEEVAAVAEAEGVHLSVEEVREYVRQ 242 (304)
T ss_pred HhcCCCCCCChHHHHHHHHHHHHHhchhHHHHHhCCChhHHhcCccHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHH
Confidence 87776655544555666666655532 234456789999999999875 3444444332
Q ss_pred cCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy764 199 SSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLM 266 (286)
Q Consensus 199 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 266 (286)
..... ..+ .+.+.++.. .+... -++. -..++.++++++|+++|..+.+++.++...
T Consensus 243 ~~~~~--~~~---~sSm~~D~~-~gr~t---Eid~---i~G~~v~~a~~~gv~~P~~~~l~~~~~~~~ 298 (304)
T PRK06522 243 VIQKT--AAN---TSSMLQDLE-AGRPT---EIDA---IVGYVLRRGRKHGIPTPLNDALYGLLKAKE 298 (304)
T ss_pred Hhhcc--CCC---CchHHHHHH-cCCCc---ccch---hccHHHHHHHHcCCCCcHHHHHHHHHHHHH
Confidence 11000 000 011111110 11000 0111 123488999999999999999999886553
|
|
| >PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.4e-10 Score=100.49 Aligned_cols=180 Identities=16% Similarity=0.185 Sum_probs=116.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH-----------HHHHcC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ-----------TLAKEG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~-----------~l~~~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||.++|..|+++|++|++||+++++.+ .+.+.| ++.+++.+ .+++||+||+|+|.
T Consensus 14 mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~~~~~~-~~~~aDlVi~av~e 92 (282)
T PRK05808 14 MGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITGTTDLD-DLKDADLVIEAATE 92 (282)
T ss_pred HHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeeeecccc
Confidence 899999999999999999999998874 333334 23456665 47899999999987
Q ss_pred hhHHH-HHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcCceEEE--ecCCHhh
Q psy764 58 SQDVL-DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFM--VGGDKSS 133 (286)
Q Consensus 58 ~~~~~-~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~--~gg~~~~ 133 (286)
+..++ +++.. +.+.++++++|+ ++|.+.... ++++.+.. .-+++. +|....+. ..+. -+. .+.+++.
T Consensus 93 ~~~~k~~~~~~---l~~~~~~~~il~-s~ts~~~~~-~la~~~~~-~~r~ig~h~~~P~~~--~~~v-ev~~g~~t~~e~ 163 (282)
T PRK05808 93 NMDLKKKIFAQ---LDEIAKPEAILA-TNTSSLSIT-ELAAATKR-PDKVIGMHFFNPVPV--MKLV-EIIRGLATSDAT 163 (282)
T ss_pred cHHHHHHHHHH---HHhhCCCCcEEE-ECCCCCCHH-HHHHhhCC-CcceEEeeccCCccc--CccE-EEeCCCCCCHHH
Confidence 66665 55553 666777787773 333333333 55555532 223332 12221111 1111 222 3457899
Q ss_pred HHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 134 ~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
++.+.++++.+|+.++++++. .+. +.|-+. ...++|+..+.++--.+++++-.++..+
T Consensus 164 ~~~~~~l~~~lGk~pv~~~d~-~g~----i~~Ri~---~~~~~ea~~~~~~gv~~~~diD~~~~~g 221 (282)
T PRK05808 164 HEAVEALAKKIGKTPVEVKNA-PGF----VVNRIL---IPMINEAIFVLAEGVATAEDIDEGMKLG 221 (282)
T ss_pred HHHHHHHHHHcCCeeEEecCc-cCh----HHHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 999999999999999999752 222 234333 3456899888876546788887776544
|
|
| >KOG2666|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.5e-10 Score=96.35 Aligned_cols=218 Identities=15% Similarity=0.182 Sum_probs=152.3
Q ss_pred CcEEEEcCCchHHHHHHHc-------------------CCcccCCHHHHhhcCcEEEEecCChhHHHH-----------H
Q psy764 15 HDVIVYDKNTDASQTLAKE-------------------GANMALSLSTLASGAEFIISMLPASQDVLD-----------A 64 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~-------------------g~~~~~s~~e~~~~adivi~~v~~~~~~~~-----------v 64 (286)
.+|++.|.+..++..+... +..+..+.+.+++++|+||++|.+|.-... +
T Consensus 27 i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadlvfisvntptkt~g~gkg~aadlky~ 106 (481)
T KOG2666|consen 27 IEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLVFISVNTPTKTYGLGKGKAADLKYW 106 (481)
T ss_pred eEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceEEEEecCCcccccCCCCcccchhHH
Confidence 3788889988877665442 245667889999999999999988753211 1
Q ss_pred hcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHh--cCCceEeccCCCCHHhhhcCce--------EEEecCCH---
Q psy764 65 YDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLARE--KQITFLDAPVSGGTKAAQEATL--------TFMVGGDK--- 131 (286)
Q Consensus 65 ~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~--~g~~~~~~pv~g~~~~a~~g~l--------~~~~gg~~--- 131 (286)
-....-+.+.....++|++.||+....++.+...+.. .|+.| .+...|....+|+. .+++||++
T Consensus 107 es~ar~ia~~s~~~kivvekstvpv~aaesi~~il~~n~~~i~f---qilsnpeflaegtaikdl~npdrvligg~etpe 183 (481)
T KOG2666|consen 107 ESAARMIADVSVSDKIVVEKSTVPVKAAESIEKILNHNSKGIKF---QILSNPEFLAEGTAIKDLFNPDRVLIGGRETPE 183 (481)
T ss_pred HHHHHHHHHhccCCeEEEeeccccchHHHHHHHHHhcCCCCcee---EeccChHHhcccchhhhhcCCceEEECCCCChh
Confidence 1111124444567799999999999999988887742 24433 23334444433332 68888863
Q ss_pred --hhHHHHHHHHHHhcC-CeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccc
Q psy764 132 --SSLEKAKPILKCMGR-NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEV 208 (286)
Q Consensus 132 --~~~~~~~~ll~~~g~-~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~ 208 (286)
.+++....+++.+-. .-+.+-..-+++.-|++.|.+++--+..++-+.++|++.|.|..++.-+++..+ ..
T Consensus 184 g~~av~~l~~vyehwvp~~~iittntwsselsklaanaflaqrissins~salceatgadv~eva~avg~d~---ri--- 257 (481)
T KOG2666|consen 184 GFQAVQALKDVYEHWVPREQIITTNTWSSELSKLAANAFLAQRISSINSMSALCEATGADVSEVAYAVGTDS---RI--- 257 (481)
T ss_pred HHHHHHHHHHHHHhhCcccceeeccccHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCHHHHHHHhcccc---cc---
Confidence 345555666666633 233444568999999999999999999999999999999999998888776431 11
Q ss_pred cCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCC
Q psy764 209 YNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQ 251 (286)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~ 251 (286)
+++++ + -+-||..+++.||+-.+.-+++.+|+|
T Consensus 258 ---g~kfl-----~--asvgfggscfqkdilnlvyice~lnlp 290 (481)
T KOG2666|consen 258 ---GSKFL-----N--ASVGFGGSCFQKDILNLVYICECLNLP 290 (481)
T ss_pred ---cHHHh-----h--cccCcCchhHHHHHHHHHHHHhcCCCh
Confidence 11121 1 135888999999999999999999976
|
|
| >PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate | Back alignment and domain information |
|---|
Probab=99.29 E-value=1e-11 Score=98.05 Aligned_cols=127 Identities=17% Similarity=0.264 Sum_probs=92.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC--------------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG--------------ANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
+|+++|..|+++||+|++|.|+++.++.+.+.+ +.++++++++++++|+||+++|. +..++++..
T Consensus 10 ~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~~n~~~~~~~~l~~~i~~t~dl~~a~~~ad~IiiavPs-~~~~~~~~~ 88 (157)
T PF01210_consen 10 WGTALAALLADNGHEVTLWGRDEEQIEEINETRQNPKYLPGIKLPENIKATTDLEEALEDADIIIIAVPS-QAHREVLEQ 88 (157)
T ss_dssp HHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHTSETTTSTTSBEETTEEEESSHHHHHTT-SEEEE-S-G-GGHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhCCCCCCCCCcccCcccccccCHHHHhCcccEEEecccH-HHHHHHHHH
Confidence 699999999999999999999999998887642 45678899999999999999995 688999986
Q ss_pred CccccccCCCCCEEEEcCCCC-chH----HHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHh
Q psy764 68 SDGILKHAKPGVIVIDSSTVD-PQV----PQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~~-p~~----~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~ 132 (286)
+.+++++++++|.++... +.+ .+.+.+.+....+.++.+|.+.........+..++++-+.+
T Consensus 89 ---l~~~l~~~~~ii~~~KG~~~~~~~~~~~~i~~~~~~~~~~~lsGP~~A~Ei~~~~pt~~~~as~~~~ 155 (157)
T PF01210_consen 89 ---LAPYLKKGQIIISATKGFEPGTLLLLSEVIEEILPIPRIAVLSGPSFAEEIAEGKPTAVVIASKNEE 155 (157)
T ss_dssp ---HTTTSHTT-EEEETS-SEETTEEEEHHHHHHHHHSSCGEEEEESS--HHHHHTT--EEEEEEESSHH
T ss_pred ---HhhccCCCCEEEEecCCcccCCCccHHHHHHHHhhhcceEEeeCccHHHHHHcCCCeEEEEEecccc
Confidence 888899999999988654 322 23334444444467888888887777777887777776655
|
This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A .... |
| >PRK05479 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2.7e-10 Score=99.40 Aligned_cols=176 Identities=18% Similarity=0.201 Sum_probs=117.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH-HHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ-TLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~-~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|++|.+.|++|.+++|+.++.. ...+.|+... ++.+++++||+|++++|+. ....++.. .+.+.+++|++
T Consensus 28 mG~AlA~~L~~sG~~Vvv~~r~~~~s~~~A~~~G~~~~-s~~eaa~~ADVVvLaVPd~-~~~~V~~~--~I~~~Lk~g~i 103 (330)
T PRK05479 28 QGHAHALNLRDSGVDVVVGLREGSKSWKKAEADGFEVL-TVAEAAKWADVIMILLPDE-VQAEVYEE--EIEPNLKEGAA 103 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCchhhHHHHHHCCCeeC-CHHHHHhcCCEEEEcCCHH-HHHHHHHH--HHHhcCCCCCE
Confidence 899999999999999999988755443 3345577655 8999999999999999965 45888731 47888899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHh-----hhcCceEEE-ecCC--HhhHHHHHHHHHHhcCCeE--
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKA-----AQEATLTFM-VGGD--KSSLEKAKPILKCMGRNIV-- 149 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~-----a~~g~l~~~-~gg~--~~~~~~~~~ll~~~g~~v~-- 149 (286)
|+.++.......+ .....++.++ -+|...+..- ...|...++ +..| .++.+.+..+++.+|....
T Consensus 104 L~~a~G~~i~~~~----~~p~~~~~Vi~vaPn~Pg~~vr~~~~~G~Gv~~l~av~~d~t~~a~~~a~~l~~aiG~~~~g~ 179 (330)
T PRK05479 104 LAFAHGFNIHFGQ----IVPPADVDVIMVAPKGPGHLVRREYEEGGGVPCLIAVHQDASGNAKDLALAYAKGIGGTRAGV 179 (330)
T ss_pred EEECCCCChhhce----eccCCCCcEEEeCCCCCchhhhhhhhcCCCceEEEEecCCCCHHHHHHHHHHHHHcCCCccce
Confidence 9776664443322 1122344443 3565554421 334554555 5666 7889999999999997643
Q ss_pred ---ecCC------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q psy764 150 ---HCGD------SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192 (286)
Q Consensus 150 ---~~g~------~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~ 192 (286)
.+.+ .|. ++ .+..+....+..++.....+|.+|+..
T Consensus 180 ~~ttf~~e~~~dl~ge-q~------vl~gg~~~l~~~~~e~l~eaG~~pe~A 224 (330)
T PRK05479 180 IETTFKEETETDLFGE-QA------VLCGGLTELIKAGFETLVEAGYQPEMA 224 (330)
T ss_pred eeeeecccccccchhh-HH------HHhhHHHHHHHHHHHHHHHcCCCHHHH
Confidence 1111 122 11 223344455666677789999998764
|
|
| >COG2085 Predicted dinucleotide-binding enzymes [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.26 E-value=7.1e-11 Score=95.23 Aligned_cols=154 Identities=18% Similarity=0.194 Sum_probs=99.7
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCc-hHHHHHHHc-CCc-ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNT-DASQTLAKE-GAN-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~-~~~~~l~~~-g~~-~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
+||+++|++|+++||+|.+-+|+. ++.+...+. +.. ...++.++++.+||||++||. ..+.+++.+ +...+ .
T Consensus 11 niG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~l~~~i~~~~~~dA~~~aDVVvLAVP~-~a~~~v~~~---l~~~~-~ 85 (211)
T COG2085 11 NIGSALALRLAKAGHEVIIGSSRGPKALAAAAAALGPLITGGSNEDAAALADVVVLAVPF-EAIPDVLAE---LRDAL-G 85 (211)
T ss_pred hHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHhhccccccCChHHHHhcCCEEEEeccH-HHHHhHHHH---HHHHh-C
Confidence 489999999999999999996654 444444332 433 345789999999999999996 577777764 55544 4
Q ss_pred CCEEEEcCCCC---------------chHHHHHHHHHHhcCCceEec------cCCCCHHhhhcCceEEEecCCHhhHHH
Q psy764 78 GVIVIDSSTVD---------------PQVPQTLSNLAREKQITFLDA------PVSGGTKAAQEATLTFMVGGDKSSLEK 136 (286)
Q Consensus 78 g~ivid~st~~---------------p~~~~~~~~~~~~~g~~~~~~------pv~g~~~~a~~g~l~~~~gg~~~~~~~ 136 (286)
|++|||++... -..++.+++.+... +++.+ -............-++++|-|.++.+.
T Consensus 86 ~KIvID~tnp~~~~~~~~~~~~~~~~~saae~va~~lp~a--kVVkAFn~i~a~~l~~~~~~~~~~~v~vagDD~~Ak~~ 163 (211)
T COG2085 86 GKIVIDATNPIEVNGEPGDLYLVPSEGSAAEIVAKLLPGA--KVVKAFNTIPAAVLADLAKPGGRRDVLVAGDDAEAKAV 163 (211)
T ss_pred CeEEEecCCCccccCCccccccCCCCCcHHHHHHHHCCCc--chhhhhcccCHHHhccCCCcCCceeEEEecCcHHHHHH
Confidence 89999998741 11223333333221 22221 111111111122334555556779999
Q ss_pred HHHHHHHhcCCeEecCCcchHHHHH
Q psy764 137 AKPILKCMGRNIVHCGDSGNGQVAK 161 (286)
Q Consensus 137 ~~~ll~~~g~~v~~~g~~g~a~~~K 161 (286)
+.+|.+.+|.....+|+...+..+-
T Consensus 164 v~~L~~~iG~~~ld~G~L~~a~~le 188 (211)
T COG2085 164 VAELAEDIGFRPLDAGPLENARILE 188 (211)
T ss_pred HHHHHHhcCcceeeccccccccccc
Confidence 9999999999999999865555543
|
|
| >PRK08818 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.9e-10 Score=100.24 Aligned_cols=145 Identities=13% Similarity=0.152 Sum_probs=108.8
Q ss_pred CccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc---CC
Q psy764 1 MISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH---AK 76 (286)
Q Consensus 1 ~~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~---l~ 76 (286)
+||+.+|+.|.+. |++|++||++.+ ...++.+.+++||+||+|+|- ..+.+++.. +.+. ++
T Consensus 15 liGgslA~alk~~~~~~V~g~D~~d~-----------~~~~~~~~v~~aDlVilavPv-~~~~~~l~~---l~~~~~~l~ 79 (370)
T PRK08818 15 AYGRWLARFLRTRMQLEVIGHDPADP-----------GSLDPATLLQRADVLIFSAPI-RHTAALIEE---YVALAGGRA 79 (370)
T ss_pred HHHHHHHHHHHhcCCCEEEEEcCCcc-----------ccCCHHHHhcCCCEEEEeCCH-HHHHHHHHH---HhhhhcCCC
Confidence 4899999999864 889999998521 234678889999999999994 677887765 5543 78
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHH-hhhcCceEEEecCC-HhhHHHHHHHHHHhcCCeEecCC
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTK-AAQEATLTFMVGGD-KSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~-~a~~g~l~~~~gg~-~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
++++|+|.++++....+.+ .+.+..|+. .|++|++. ....+...+++.+. .+..+.++.+++.+|.+++.+.+
T Consensus 80 ~~~iVtDVgSvK~~i~~~~----~~~~~~fVG~HPMaG~E~s~lf~g~~~iltp~~~~~~~~~v~~l~~~~Ga~v~~~~a 155 (370)
T PRK08818 80 AGQLWLDVTSIKQAPVAAM----LASQAEVVGLHPMTAPPKSPTLKGRVMVVCEARLQHWSPWVQSLCSALQAECVYATP 155 (370)
T ss_pred CCeEEEECCCCcHHHHHHH----HhcCCCEEeeCCCCCCCCCcccCCCeEEEeCCCchhHHHHHHHHHHHcCCEEEEcCH
Confidence 9999999999986655544 234567885 69999853 33456656666554 44467889999999999999987
Q ss_pred cchHHHHHHHH
Q psy764 154 SGNGQVAKLCN 164 (286)
Q Consensus 154 ~g~a~~~Kl~~ 164 (286)
..+-..+-.++
T Consensus 156 eeHD~~~A~vS 166 (370)
T PRK08818 156 EHHDRVMALVQ 166 (370)
T ss_pred HHHHHHHHHHH
Confidence 66666666554
|
|
| >PLN02712 arogenate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.2e-10 Score=107.58 Aligned_cols=155 Identities=14% Similarity=0.153 Sum_probs=111.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCcccc-ccCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGIL-KHAKPG 78 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~-~~l~~g 78 (286)
+||..+|+.|.++|++|.+|||+..+ +...+.|+..+.++.+++ +++|+||+|+| +.++.+++.. +. +.++++
T Consensus 62 ~mG~slA~~L~~~G~~V~~~dr~~~~-~~A~~~Gv~~~~d~~e~~~~~aDvViLavP-~~~~~~vl~~---l~~~~l~~g 136 (667)
T PLN02712 62 NYGQFLAKTLISQGHTVLAHSRSDHS-LAARSLGVSFFLDPHDLCERHPDVILLCTS-IISTENVLKS---LPLQRLKRN 136 (667)
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHH-HHHHHcCCEEeCCHHHHhhcCCCEEEEcCC-HHHHHHHHHh---hhhhcCCCC
Confidence 38999999999999999999998554 445566888888888866 56999999999 4688888875 53 567889
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHh--hhcCceEEEec---CC-H---hhHHHHHHHHHHhcCCe
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKA--AQEATLTFMVG---GD-K---SSLEKAKPILKCMGRNI 148 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~--a~~g~l~~~~g---g~-~---~~~~~~~~ll~~~g~~v 148 (286)
++|+|++++.....+.+.+.+ ..+..|+. .|++|.... ...+...++.+ ++ . +.++.++++++.+|.++
T Consensus 137 ~iVvDv~SvK~~~~~~l~~~l-~~~~~~v~~HPMaG~e~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~lGa~v 215 (667)
T PLN02712 137 TLFVDVLSVKEFAKNLLLDYL-PEDFDIICSHPMFGPQSAKHGWDGLRFVYEKVRIGNEELRVSRCKSFLEVFEREGCKM 215 (667)
T ss_pred eEEEECCCCcHHHHHHHHHhc-CCCCeEEeeCCcCCCccccchhccCcEEEeeccCCCccccHHHHHHHHHHHHHcCCEE
Confidence 999999998876666555554 33566774 699987632 12222234442 33 2 23556679999999999
Q ss_pred EecCCcchHHHHH
Q psy764 149 VHCGDSGNGQVAK 161 (286)
Q Consensus 149 ~~~g~~g~a~~~K 161 (286)
+.+.+...-.++-
T Consensus 216 ~~ms~eeHD~~~A 228 (667)
T PLN02712 216 VEMSCTEHDKYAA 228 (667)
T ss_pred EEeCHHHHHHHHH
Confidence 9887644444443
|
|
| >TIGR00745 apbA_panE 2-dehydropantoate 2-reductase | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.5e-09 Score=92.09 Aligned_cols=243 Identities=16% Similarity=0.144 Sum_probs=139.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc--------------cCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM--------------ALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~--------------~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
||+.+|..|.++||+|++|+|+ +..+.+.+.|..+ .+++.+ ....|+||+|++.. ++++++..
T Consensus 2 iG~~~a~~L~~~G~~V~l~~r~-~~~~~i~~~Gl~i~~~~~~~~~~~~~~~~~~~~-~~~~D~iiv~vKs~-~~~~~l~~ 78 (293)
T TIGR00745 2 VGSLYGAYLARAGHDVTLLARG-EQLEALNQEGLRIVSLGGEFQFRPVSAATSPEE-LPPADLVIITVKAY-QTEEAAAL 78 (293)
T ss_pred chHHHHHHHHhCCCcEEEEecH-HHHHHHHHCCcEEEecCCcEEEcccccccChhh-cCCCCEEEEeccch-hHHHHHHH
Confidence 8999999999999999999997 6677777655321 223344 56899999999975 67888774
Q ss_pred CccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcC----CceEeccCCC-C-HHhhhcCceEEEecCC---HhhHHHHH
Q psy764 68 SDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQ----ITFLDAPVSG-G-TKAAQEATLTFMVGGD---KSSLEKAK 138 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g----~~~~~~pv~g-~-~~~a~~g~l~~~~gg~---~~~~~~~~ 138 (286)
+.+.+.++++||.+.+.... .+.+.+.+.+.. +.+..+-..+ + ......+. +.+|.. .+..+.+.
T Consensus 79 ---l~~~l~~~~~iv~~qNG~g~-~~~l~~~~~~~~v~~g~~~~~~~~~~pg~v~~~~~~~--~~iG~~~~~~~~~~~l~ 152 (293)
T TIGR00745 79 ---LLPLIGKNTKVLFLQNGLGH-EERLRELLPARRILGGVVTHGAVREEPGVVHHAGLGA--TKIGDYVGENEAVEALA 152 (293)
T ss_pred ---hHhhcCCCCEEEEccCCCCC-HHHHHHHhCccCEEEEEEEEeeEEcCCcEEEEecccc--EEEecCCCchHHHHHHH
Confidence 77777788888876554322 234444443221 1111111111 0 00111222 334432 23455667
Q ss_pred HHHHHhcCCeEecCCcchHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHHcCCC--HHHHHHH
Q psy764 139 PILKCMGRNIVHCGDSGNGQVAKLCNNM---------------------LLGVTMMGVAEAMNLGVKLGMN--AKLLSDV 195 (286)
Q Consensus 139 ~ll~~~g~~v~~~g~~g~a~~~Kl~~n~---------------------~~~~~~~~~~Ea~~l~~~~Gl~--~~~~~~~ 195 (286)
++|+..+.++....++-...-.|++.|. ....+...+.|+..++++.|++ .+.+.+.
T Consensus 153 ~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~v~~a~G~~~~~~~~~~~ 232 (293)
T TIGR00745 153 ELLNEAGIPAELHGDILAAIWKKLLVNAAINPLTALLDCKNGELLENPEARELLRRLMDEVVRVARAEGVDLPDDEVEEL 232 (293)
T ss_pred HHHHhCCCCCEecchHHHHHHHHHhheechhHHHHHHCCccceeccChhHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHH
Confidence 7777767666555566556666665554 2234456789999999999975 3434444
Q ss_pred HHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 196 INTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 196 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
+........ .+ .+.++.+ +..+-.+ +..-=...+.+.++++|+++|..+.+++.++..
T Consensus 233 ~~~~~~~~~--~~---~sSm~~D------~~~gr~t-Eid~i~G~~v~~a~~~gv~~P~~~~l~~~~~~~ 290 (293)
T TIGR00745 233 VRAVIRMTA--EN---TSSMLQD------LLRGRRT-EIDAINGAVVRLAEKLGIDAPVNRTLYALLKAL 290 (293)
T ss_pred HHHHHhcCC--CC---CChHHHH------HHcCCcc-hHHHhccHHHHHHHHcCCCCChHHHHHHHHHHh
Confidence 432100000 00 0111111 1000001 111122358899999999999999998887643
|
This model describes enzymes that perform as 2-dehydropantoate 2-reductase, one of four enzymes required for the de novo biosynthesis of pantothenate (vitamin B5) from Asp and 2-oxoisovalerate. Although few members of the seed alignment are characterized experimentally, nearly all from complete genomes are found in a genome-wide (but not local) context of all three other pantothenate-biosynthetic enzymes (TIGR00222, TIGR00018, TIGR00223). The gene encoding this enzyme is designated apbA in Salmonella typhimurium and panE in Escherichia coli; this protein functions as a monomer and functions in the alternative pyrimidine biosynthetic, or APB, pathway, used to synthesize the pyrimidine moiety of thiamine. Note, synthesis of the pyrimidine moiety of thiamine occurs either via the first five steps in de novo purine biosynthesis, which uses the pur gene products, or through the APB pathway. Note that this family includes both NADH and NADPH |
| >PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.1e-11 Score=85.25 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=67.5
Q ss_pred ccHHHHHHHHhCC---CcEEEE-cCCchHHHHHHHc-CCcccC-CHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQG---HDVIVY-DKNTDASQTLAKE-GANMAL-SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G---~~V~~~-dr~~~~~~~l~~~-g~~~~~-s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||++|++.|.++| ++|.++ +|++++.+++.+. +..... +..|+++++|+||+||| |+++.+++.. + +..
T Consensus 10 mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvilav~-p~~~~~v~~~---i-~~~ 84 (96)
T PF03807_consen 10 MGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILAVK-PQQLPEVLSE---I-PHL 84 (96)
T ss_dssp HHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-S--GGGHHHHHHH---H-HHH
T ss_pred HHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEEEC-HHHHHHHHHH---H-hhc
Confidence 8999999999999 899955 9999999998655 666666 89999999999999999 6789999875 5 667
Q ss_pred CCCCEEEEcCC
Q psy764 76 KPGVIVIDSST 86 (286)
Q Consensus 76 ~~g~ivid~st 86 (286)
.+++++|+++.
T Consensus 85 ~~~~~vis~~a 95 (96)
T PF03807_consen 85 LKGKLVISIAA 95 (96)
T ss_dssp HTTSEEEEEST
T ss_pred cCCCEEEEeCC
Confidence 89999998764
|
It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D .... |
| >TIGR00465 ilvC ketol-acid reductoisomerase | Back alignment and domain information |
|---|
Probab=99.11 E-value=3.4e-09 Score=92.56 Aligned_cols=184 Identities=16% Similarity=0.130 Sum_probs=114.7
Q ss_pred CccHHHHHHHHhCCCcEEEEcC-CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDK-NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+||.++|++|.++|++|+++++ ++++.+.+.+.|+... ++.+++++||+|++++|+..+...+..+ +.+.++++.
T Consensus 13 ~mG~AiA~~L~~sG~~Viv~~~~~~~~~~~a~~~Gv~~~-s~~ea~~~ADiVvLaVpp~~~~~~v~~e---i~~~l~~g~ 88 (314)
T TIGR00465 13 SQGHAQALNLRDSGLNVIVGLRKGGASWKKATEDGFKVG-TVEEAIPQADLIMNLLPDEVQHEVYEAE---IQPLLKEGK 88 (314)
T ss_pred HHHHHHHHHHHHCCCeEEEEECcChhhHHHHHHCCCEEC-CHHHHHhcCCEEEEeCCcHhHHHHHHHH---HHhhCCCCc
Confidence 3899999999999999887654 4456666667788754 5889999999999999965366665543 667777776
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCC-ceEeccCCCCHH-----hhhcCceEEE-ecC--CHhhHHHHHHHHHHhcCC---
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQI-TFLDAPVSGGTK-----AAQEATLTFM-VGG--DKSSLEKAKPILKCMGRN--- 147 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~-~~~~~pv~g~~~-----~a~~g~l~~~-~gg--~~~~~~~~~~ll~~~g~~--- 147 (286)
+|.-+...+... +...+. .+. .+.-+|...+.. ....|...++ ++. +.+..+.+..+|+.+|..
T Consensus 89 iVs~aaG~~i~~---~~~~~~-~~~~VvrvmPn~p~~~vr~~~~~G~G~~~l~a~~~~~~~~~~~~~~~~~~~iG~~~~~ 164 (314)
T TIGR00465 89 TLGFSHGFNIHF---VQIVPP-KDVDVVMVAPKGPGTLVREEYKEGFGVPTLIAVEQDPTGEAMAIALAYAKAIGGGRAG 164 (314)
T ss_pred EEEEeCCccHhh---ccccCC-CCCcEEEECCCCCcHHHHHHhhcCCCeeEEEEecCCCCHHHHHHHHHHHHHcCCCccc
Confidence 444444433322 222332 233 344667665542 0145553443 333 467788999999999986
Q ss_pred ----eE--ecCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 148 ----IV--HCGD--SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 148 ----v~--~~g~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
.| .+.+ .+...++--+...+++ .+.|++ .++|++++..+......
T Consensus 165 ~~~t~f~~e~~edl~~~~t~l~Gs~pa~v~----~~~eal---v~~G~~~e~A~~~~~~~ 217 (314)
T TIGR00465 165 VLETTFKEETESDLFGEQAVLCGGLTALIK----AGFDTL---VEAGYQPELAYFETVHE 217 (314)
T ss_pred eeechhHhhhhHHhcCcchhHHhHHHHHHH----HHHHHH---HHcCCCHHHHHHHHHHH
Confidence 32 2221 2333333222222233 233664 79999999988876554
|
This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway |
| >PRK06249 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=89.84 Aligned_cols=245 Identities=12% Similarity=0.102 Sum_probs=138.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-------------CCHHHHhhcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-------------LSLSTLASGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-------------~s~~e~~~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||+.+|..|.++||+|++|.|++. +.+.+.|.... .+..+....+|+||+|+|.. ++.+++..
T Consensus 16 iG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~-~~~~~~~~- 91 (313)
T PRK06249 16 IGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT-ANALLAPL- 91 (313)
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC-ChHhHHHH-
Confidence 799999999999999999999863 44545443211 11223456899999999975 56776664
Q ss_pred ccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc----CCceEeccCCCC--HHhhhcCceEE-EecCC------HhhHH
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSGG--TKAAQEATLTF-MVGGD------KSSLE 135 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~----g~~~~~~pv~g~--~~~a~~g~l~~-~~gg~------~~~~~ 135 (286)
+.+.+.++.+|+..-.... ..+.+.+.+.+. ++.++.+...+. ......|.+.+ ...++ .+..+
T Consensus 92 --l~~~~~~~~~iv~lqNG~~-~~e~l~~~~~~~~v~~g~~~~~a~~~~pg~v~~~~~g~~~iG~~~~~~~~~~~~~~~~ 168 (313)
T PRK06249 92 --IPQVAAPDAKVLLLQNGLG-VEEQLREILPAEHLLGGLCFICSNRVGPGVIHHLAYGRVNLGYHSGPAADDGITARVE 168 (313)
T ss_pred --HhhhcCCCCEEEEecCCCC-cHHHHHHHCCCCcEEEEeeeEeEecCCCeEEEECCCCcEEEecCCCCcccchHHHHHH
Confidence 5566667777776654432 233444444332 222333222221 01112234222 11232 35556
Q ss_pred HHHHHHHHhcCCeEecCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcCCC--HHHH
Q psy764 136 KAKPILKCMGRNIVHCGDSGNGQVAKLCNNML---------------------LGVTMMGVAEAMNLGVKLGMN--AKLL 192 (286)
Q Consensus 136 ~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~---------------------~~~~~~~~~Ea~~l~~~~Gl~--~~~~ 192 (286)
.+..+|+..+.++....++-...-.|++.|.. .......+.|+..++++.|++ .+.+
T Consensus 169 ~l~~~l~~ag~~~~~~~di~~~~W~Kl~~N~~~n~ltal~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~Gi~~~~~~~ 248 (313)
T PRK06249 169 EGAALFRAAGIDSQAMPDLAQARWQKLVWNIPYNGLSVLLNASTDPLMADPDSRALIRALMAEVIQGAAACGHTLPEGYA 248 (313)
T ss_pred HHHHHHHhCCCCceeCchHHHHHHhHhheecchhHHHHHhCCChHHHHhCccHHHHHHHHHHHHHHHHHhcCCCCChhHH
Confidence 77788888887766666666666667665532 234456689999999999986 2222
Q ss_pred HHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy764 193 SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLM 266 (286)
Q Consensus 193 ~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 266 (286)
..++......+ .+ .+.++++ +..+-.+ +.--=...+.++++++|+++|..+.+++.++...
T Consensus 249 ~~~~~~~~~~~---~~---~sSM~qD------~~~gr~t-Eid~i~G~vv~~a~~~Gi~~P~~~~l~~~l~~~e 309 (313)
T PRK06249 249 DHMLAVTERMP---DY---RPSMYHD------FEEGRPL-ELEAIYANPLAAARAAGCAMPRVEMLYQALEFLD 309 (313)
T ss_pred HHHHHHhhcCC---CC---CChHHHH------HHCCCcc-cHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 22222110000 00 0112211 1111111 1111234589999999999999999998877553
|
|
| >PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.9e-10 Score=85.69 Aligned_cols=100 Identities=21% Similarity=0.297 Sum_probs=66.7
Q ss_pred CccHHHHHHHHhCCCcEEE-EcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc--CC
Q psy764 1 MISTLKLFFLQFQGHDVIV-YDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH--AK 76 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~-~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~--l~ 76 (286)
.+|++|++.|.++||+|.. |+|+++..+++... +.....++.|+++++|++|++|||+ ++.++..+ +... .+
T Consensus 20 rVG~~La~aL~~ag~~v~~v~srs~~sa~~a~~~~~~~~~~~~~~~~~~aDlv~iavpDd-aI~~va~~---La~~~~~~ 95 (127)
T PF10727_consen 20 RVGTALARALARAGHEVVGVYSRSPASAERAAAFIGAGAILDLEEILRDADLVFIAVPDD-AIAEVAEQ---LAQYGAWR 95 (127)
T ss_dssp CCCCHHHHHHHHTTSEEEEESSCHH-HHHHHHC--TT-----TTGGGCC-SEEEE-S-CC-HHHHHHHH---HHCC--S-
T ss_pred HHHHHHHHHHHHCCCeEEEEEeCCcccccccccccccccccccccccccCCEEEEEechH-HHHHHHHH---HHHhccCC
Confidence 3799999999999999875 58998888777654 5556667889999999999999985 88888875 6655 77
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
+|++|++||...+....+- +.++|....
T Consensus 96 ~g~iVvHtSGa~~~~vL~p---~~~~Ga~~~ 123 (127)
T PF10727_consen 96 PGQIVVHTSGALGSDVLAP---ARERGAIVA 123 (127)
T ss_dssp TT-EEEES-SS--GGGGHH---HHHTT-EEE
T ss_pred CCcEEEECCCCChHHhhhh---HHHCCCeEE
Confidence 9999999998877766544 445665443
|
This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A. |
| >cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=99.00 E-value=8.8e-10 Score=86.69 Aligned_cols=101 Identities=21% Similarity=0.231 Sum_probs=78.1
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-CC----cccCCHHHHhhcCcEEEEecCChhH-HHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-GA----NMALSLSTLASGAEFIISMLPASQD-VLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~----~~~~s~~e~~~~adivi~~v~~~~~-~~~v~~~~~~l~~~ 74 (286)
||.++++.|.+.| ++|.+|||++++.+.+.+. +. ....+..++++++|+||+|+|.+.. ++.+... ...
T Consensus 30 ~g~~~a~~l~~~g~~~v~v~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvi~~~~~~~~~~~~~~~~----~~~ 105 (155)
T cd01065 30 AARAVAYALAELGAAKIVIVNRTLEKAKALAERFGELGIAIAYLDLEELLAEADLIINTTPVGMKPGDELPLP----PSL 105 (155)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhcccceeecchhhccccCCEEEeCcCCCCCCCCCCCCC----HHH
Confidence 7889999999986 7899999999988877554 32 2455777888999999999998654 3343332 123
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
++++++++|+|+..+.+ .+.+.+.+.|+.+++
T Consensus 106 ~~~~~~v~D~~~~~~~~--~l~~~~~~~g~~~v~ 137 (155)
T cd01065 106 LKPGGVVYDVVYNPLET--PLLKEARALGAKTID 137 (155)
T ss_pred cCCCCEEEEcCcCCCCC--HHHHHHHHCCCceeC
Confidence 67899999999986654 788888889998886
|
Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann |
| >KOG3124|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.7e-08 Score=80.75 Aligned_cols=237 Identities=14% Similarity=0.138 Sum_probs=155.4
Q ss_pred cHHHHHHHHhCCC----cEEEEcCCchHH-HHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGH----DVIVYDKNTDAS-QTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~----~V~~~dr~~~~~-~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
-.++++.+.+.|. ++..+-.+.... ..+...|...+.+..+.++.+|++|++++ |+.+..++.+ +......
T Consensus 12 a~ala~g~~~~Gi~~~~~i~~s~~~~~~~~~~~~~~g~~~~~~n~~~~~~s~v~~~svK-p~~i~~vls~---~~~~~~~ 87 (267)
T KOG3124|consen 12 AQALASGFVASGIIEANRIWASVQTERSLGLMFEALGVKTVFTNLEVLQASDVVFLSVK-PQVIESVLSE---IKPKVSK 87 (267)
T ss_pred HHHHHhcccccCCCchhheeeecCchhhhhhhhhcCCceeeechHHHHhhccceeEeec-chhHHHHhhc---Ccccccc
Confidence 3466777777774 466665532222 33667798888888999999999999999 6899999986 5555678
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCC---HhhHHHHHHHHHHhcCCeE-----
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGD---KSSLEKAKPILKCMGRNIV----- 149 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~---~~~~~~~~~ll~~~g~~v~----- 149 (286)
+++|+.+--...-. .+.+.+. ...+++.. +...|....+|. .++.-|. .+..+.++++++..|....
T Consensus 88 ~~iivS~aaG~tl~--~l~~~l~-~~~rviRv-mpNtp~~v~eg~-sv~~~g~~~~~~D~~l~~~ll~~vG~~~evpE~~ 162 (267)
T KOG3124|consen 88 GKIIVSVAAGKTLS--SLESKLS-PPTRVIRV-MPNTPSVVGEGA-SVYAIGCHATNEDLELVEELLSAVGLCEEVPEKC 162 (267)
T ss_pred ceEEEEEeecccHH--HHHHhcC-CCCceEEe-cCCChhhhhcCc-EEEeeCCCcchhhHHHHHHHHHhcCcceeCcHHh
Confidence 89999765443332 2233332 12233321 225566666776 4455442 4566889999999997431
Q ss_pred ---ecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCC
Q psy764 150 ---HCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNY 225 (286)
Q Consensus 150 ---~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~ 225 (286)
++|-.|++.++ .+.++.++++. +.++|++++..+++..++- |...+...-..-|..+ .+...
T Consensus 163 iDavTgLsGSgPAy-------~f~~ieaLadG---gVkmGlPr~lA~~laaqtllGAakMVl~s~qHP~~L----kd~V~ 228 (267)
T KOG3124|consen 163 IDAVTGLSGSGPAY-------VFVAIEALADG---GVKMGLPRQLAYRLAAQTLLGAAKMVLASGQHPAQL----KDDVC 228 (267)
T ss_pred hhHHhhccCCcHHH-------HHHHHHHHhcc---ccccCCCHHHHHHHHHHHHHhHHHHHHhccCCcHHH----hCCCC
Confidence 33445666665 77778888888 8999999999999877752 2223222222223333 24455
Q ss_pred CCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 226 NGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 226 ~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
+|+.+.-. .....++-|++.-++.++.+--.++.+.|
T Consensus 229 SPgG~TI~-------glh~LE~ggfRs~linaVeaa~~r~~el~ 265 (267)
T KOG3124|consen 229 SPGGTTIY-------GLHALEKGGFRSGLINAVEAATKRARELG 265 (267)
T ss_pred CCCcchHH-------HHHHHHhCCchhHHHHHHHHHHHHHHHhc
Confidence 77765554 55667888999999999999888887654
|
|
| >PF00984 UDPG_MGDP_dh: UDP-glucose/GDP-mannose dehydrogenase family, central domain; InterPro: IPR014026 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.4e-08 Score=71.52 Aligned_cols=93 Identities=22% Similarity=0.188 Sum_probs=74.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhH
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLL 234 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 234 (286)
..|+.+|++.|.+.+..++.++|...+|++.|+|..++.+.++...-.+ .....| .++|...++
T Consensus 2 ~~AEl~K~~~N~~~a~~iaf~Nel~~lce~~giD~~~V~~~~~~d~ri~--~~~~~p--------------g~g~GG~Cl 65 (96)
T PF00984_consen 2 EEAELIKYAENAFRATKIAFANELARLCEKLGIDVYEVIEAANTDPRIG--PHYLRP--------------GPGFGGSCL 65 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSBHHHHHHHHHTSTTTT--SSS-S---------------SSS--SSCH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCcccc--cccCCC--------------CCCCCCcch
Confidence 3689999999999999999999999999999999999999998642111 000111 235777899
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q psy764 235 AKDMKLAEDLANRCTAQTDLSKLATSIYK 263 (286)
Q Consensus 235 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 263 (286)
.||...+...+++.|.+.++++++.+...
T Consensus 66 pkD~~~L~~~~~~~g~~~~ll~~~~~~N~ 94 (96)
T PF00984_consen 66 PKDPYALIYLAKELGYPPQLLEAVININE 94 (96)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHcCCCHHHHHHHHHhcC
Confidence 99999999999999999999999887654
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents an alpha helical region that serves as the dimerisation interface for these enzymes [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2O3J_A 3OJO_A 3OJL_A 3PLR_A 3PJG_A 3PID_A 3PLN_A 3PHL_A 3TDK_B 2Q3E_A .... |
| >PRK07574 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.5e-08 Score=90.74 Aligned_cols=102 Identities=13% Similarity=0.146 Sum_probs=86.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|.+|.+|||+....+.....|+....+++|+++.||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 203 IG~~vA~~l~~fG~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--~~l~~mk~ga~l 280 (385)
T PRK07574 203 IGLAVLRRLKPFDVKLHYTDRHRLPEEVEQELGLTYHVSFDSLVSVCDVVTIHCPLHPETEHLFDA--DVLSRMKRGSYL 280 (385)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCchhhHhhcCceecCCHHHHhhcCCEEEEcCCCCHHHHHHhCH--HHHhcCCCCcEE
Confidence 799999999999999999999874434334557776789999999999999999999999999853 577889999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
||++....-....+.+.+.+..+.
T Consensus 281 IN~aRG~iVDe~AL~~AL~sG~i~ 304 (385)
T PRK07574 281 VNTARGKIVDRDAVVRALESGHLA 304 (385)
T ss_pred EECCCCchhhHHHHHHHHHhCCcc
Confidence 999999999999999988876543
|
|
| >COG4007 Predicted dehydrogenase related to H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.7e-07 Score=75.29 Aligned_cols=182 Identities=18% Similarity=0.279 Sum_probs=127.1
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch-----HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTD-----ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
|..||-.++++||+|...+.|.+ ..++..+.|++++++-.++++.+++.++..|-.+..-.+... |+++++.
T Consensus 33 Ga~mAiefAeAGHDVVLaePn~d~~dd~~w~~vedAGV~vv~dD~eaa~~~Ei~VLFTPFGk~T~~Iare---i~~hvpE 109 (340)
T COG4007 33 GARMAIEFAEAGHDVVLAEPNRDIMDDEHWKRVEDAGVEVVSDDAEAAEHGEIHVLFTPFGKATFGIARE---ILEHVPE 109 (340)
T ss_pred chHHHHHHHHcCCcEEeecCCccccCHHHHHHHHhcCcEEecCchhhhhcceEEEEecccchhhHHHHHH---HHhhCcC
Confidence 78899999999999999976643 356677789999999999999999999999987666666654 8888999
Q ss_pred CCEEEEcCCCCchHHHH-HHHHHHhc----CC-ceEeccCCCCHHhhhcCceEEEecC--------CHhhHHHHHHHHHH
Q psy764 78 GVIVIDSSTVDPQVPQT-LSNLAREK----QI-TFLDAPVSGGTKAAQEATLTFMVGG--------DKSSLEKAKPILKC 143 (286)
Q Consensus 78 g~ivid~st~~p~~~~~-~~~~~~~~----g~-~~~~~pv~g~~~~a~~g~l~~~~gg--------~~~~~~~~~~ll~~ 143 (286)
|.+|.+++|++|...-+ +...++-+ |+ .+.++.+-|+|.+ +- .++.|- .++.++++.++.++
T Consensus 110 gAVicnTCT~sp~vLy~~LE~~Lr~kR~dVGvssmHPAgvPGtp~h---~~-yviagr~t~g~elATeEQi~r~velaes 185 (340)
T COG4007 110 GAVICNTCTVSPVVLYYSLEGELRTKREDVGVSSMHPAGVPGTPQH---GH-YVIAGRSTEGKELATEEQIERCVELAES 185 (340)
T ss_pred CcEecccccCchhHHHHHhhhhhcCchhhcCccccCCCCCCCCCCC---ce-EEEeccCCCceeeccHHHHHHHHHHHHh
Confidence 99999999999876543 33333222 33 2334445555432 22 333321 36778999999999
Q ss_pred hcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCHHHH
Q psy764 144 MGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGV-KLGMNAKLL 192 (286)
Q Consensus 144 ~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~-~~Gl~~~~~ 192 (286)
.|+.++.+- ..--+++-=....+....++++.+-+..+. -.|.+.+.+
T Consensus 186 ~Gk~~yv~p-adv~s~VaDmg~lvtav~l~gvldyy~Vg~qIi~AP~eMI 234 (340)
T COG4007 186 TGKEVYVLP-ADVVSAVADMGVLVTAVALSGVLDYYYVGTQIIGAPKEMI 234 (340)
T ss_pred cCCceEecC-HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 999877664 333333333445556666777777777666 356665443
|
|
| >PLN03139 formate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.8e-08 Score=88.95 Aligned_cols=102 Identities=14% Similarity=0.211 Sum_probs=87.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|.+|.+|||+....+.....|+...+++++++.+||+|++++|...+.+.++.. .+++.+++|.++
T Consensus 210 IG~~vA~~L~afG~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~sDvV~l~lPlt~~T~~li~~--~~l~~mk~ga~l 287 (386)
T PLN03139 210 IGRLLLQRLKPFNCNLLYHDRLKMDPELEKETGAKFEEDLDAMLPKCDVVVINTPLTEKTRGMFNK--ERIAKMKKGVLI 287 (386)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhhHhhcCceecCCHHHHHhhCCEEEEeCCCCHHHHHHhCH--HHHhhCCCCeEE
Confidence 799999999999999999999865444445567777789999999999999999999999999853 578889999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
||++....-....+.+.+.+..+.
T Consensus 288 IN~aRG~iVDe~AL~~AL~sG~l~ 311 (386)
T PLN03139 288 VNNARGAIMDTQAVADACSSGHIG 311 (386)
T ss_pred EECCCCchhhHHHHHHHHHcCCce
Confidence 999999998888998888766443
|
|
| >PRK05708 2-dehydropantoate 2-reductase; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.3e-07 Score=81.30 Aligned_cols=248 Identities=14% Similarity=0.047 Sum_probs=139.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccC-----------CHHHHhhcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMAL-----------SLSTLASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~-----------s~~e~~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
||+.+|..|.++|++|++++|+++..+.+.+. |....+ ...+.....|+||+|++.. ++.+++..
T Consensus 13 iG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~~g~~~~~~~~~~~~~~~~~~D~viv~vK~~-~~~~al~~-- 89 (305)
T PRK05708 13 LGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVEQGQASLYAIPAETADAAEPIHRLLLACKAY-DAEPAVAS-- 89 (305)
T ss_pred HHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEeeCCcceeeccCCCCcccccccCEEEEECCHH-hHHHHHHH--
Confidence 79999999999999999999998888877654 432210 1111234689999999974 67777764
Q ss_pred cccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCC-----CHHhhh-cCceEEEecC-CHhhHHHHHHHHH
Q psy764 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG-----GTKAAQ-EATLTFMVGG-DKSSLEKAKPILK 142 (286)
Q Consensus 70 ~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g-----~~~~a~-~g~l~~~~gg-~~~~~~~~~~ll~ 142 (286)
+.+.+.+++.|+-+-+.... .+.+.+.+... .++.+-+.- +|.... .+.-.+.+|. +.+..+++.++|+
T Consensus 90 -l~~~l~~~t~vv~lQNGv~~-~e~l~~~~~~~--~v~~g~~~~ga~~~~pg~v~~~~~g~~~~G~~~~~~~~~l~~~l~ 165 (305)
T PRK05708 90 -LAHRLAPGAELLLLQNGLGS-QDAVAARVPHA--RCIFASSTEGAFRDGDWRVVFAGHGFTWLGDPRNPTAPAWLDDLR 165 (305)
T ss_pred -HHhhCCCCCEEEEEeCCCCC-HHHHHHhCCCC--cEEEEEeeeceecCCCCEEEEeceEEEEEcCCCCcchHHHHHHHH
Confidence 77778888877766444322 12333333322 222221111 111111 1111233442 2334466667777
Q ss_pred HhcCCeEecCCcchHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCC--HHHHHHHHHc---c
Q psy764 143 CMGRNIVHCGDSGNGQVAKLCNNMLLG------------------VTMMGVAEAMNLGVKLGMN--AKLLSDVINT---S 199 (286)
Q Consensus 143 ~~g~~v~~~g~~g~a~~~Kl~~n~~~~------------------~~~~~~~Ea~~l~~~~Gl~--~~~~~~~~~~---~ 199 (286)
.-+.++.+..++-...-.|++.|.... .+...+.|+..++++.|++ .+.+.+.+.. .
T Consensus 166 ~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~~l~~E~~~va~a~G~~~~~~~~~~~~~~~~~~ 245 (305)
T PRK05708 166 EAGIPHEWTVDILTRLWRKLALNCAINPLTVLHDCRNGGLLEHAQEVAALCAELSELLRRCGQPAAAANLHEEVQRVIQA 245 (305)
T ss_pred hcCCCCccCHHHHHHHHHHHHHHccccHhHHhhCCCCcchhcCHHHHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHh
Confidence 766655555556555666766655321 2456688999999999975 2323332221 1
Q ss_pred CCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH-HcCCC
Q psy764 200 SGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLM-DKGCQ 271 (286)
Q Consensus 200 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~-~~g~g 271 (286)
+.... +.|.++....+.. -++. =...+.++++++|++.|..+.+++..+... +.|+.
T Consensus 246 ~~~~~--------sSM~qD~~~gR~t----Eid~---i~G~vvr~a~~~Gv~~P~~~~l~~~v~~~~~~~~~~ 303 (305)
T PRK05708 246 TAANY--------SSMYQDVRAGRRT----EISY---LLGYACRAADRHGLPLPRLQHLQQRLVAHLRARGLP 303 (305)
T ss_pred ccCCC--------cHHHHHHHcCCce----eehh---hhhHHHHHHHHcCCCCchHHHHHHHHHHHHHhcCCC
Confidence 11000 1111111101100 0111 123588999999999999999998776554 45554
|
|
| >COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.3e-07 Score=82.50 Aligned_cols=246 Identities=17% Similarity=0.157 Sum_probs=147.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc------------CCHHHHhhcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA------------LSLSTLASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~------------~s~~e~~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
||+-++..|.++|++|+++.|++. .+++.+.|..+. ....+....+|+||++++. .++++++..
T Consensus 11 vG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~GL~i~~~~~~~~~~~~~~~~~~~~~~~Dlviv~vKa-~q~~~al~~-- 86 (307)
T COG1893 11 IGSLLGARLAKAGHDVTLLVRSRR-LEALKKKGLRIEDEGGNFTTPVVAATDAEALGPADLVIVTVKA-YQLEEALPS-- 86 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCCeEEecCCCccccccccccChhhcCCCCEEEEEecc-ccHHHHHHH--
Confidence 799999999999999999999876 778877663222 2223445589999999997 578888875
Q ss_pred cccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCC-----H---HhhhcCce--EEEecCCHhhHHHHHH
Q psy764 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG-----T---KAAQEATL--TFMVGGDKSSLEKAKP 139 (286)
Q Consensus 70 ~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~-----~---~~a~~g~l--~~~~gg~~~~~~~~~~ 139 (286)
+.+.+.+.+.|+-.-+.....- .+.+...+. .++.+-++.+ + .....|.. ..+.|++++.++.+.+
T Consensus 87 -l~~~~~~~t~vl~lqNG~g~~e-~l~~~~~~~--~il~G~~~~~a~~~~~g~v~~~g~g~~~ig~~~~~~~~~~~~i~~ 162 (307)
T COG1893 87 -LAPLLGPNTVVLFLQNGLGHEE-ELRKILPKE--TVLGGVTTHGAVREGPGHVVHTGLGDTVIGELRGGRDELVKALAE 162 (307)
T ss_pred -hhhcCCCCcEEEEEeCCCcHHH-HHHHhCCcc--eEEEEEeeeeeEecCCceEEEecCCcEEEccCCCCchHHHHHHHH
Confidence 7888888877775544433322 455544443 1222111111 1 11111221 1223345567888888
Q ss_pred HHHHhcCCeEecCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcC--CCHHHHHHHH
Q psy764 140 ILKCMGRNIVHCGDSGNGQVAKLCNNMLL---------------------GVTMMGVAEAMNLGVKLG--MNAKLLSDVI 196 (286)
Q Consensus 140 ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~---------------------~~~~~~~~Ea~~l~~~~G--l~~~~~~~~~ 196 (286)
+|+.-+.++.+..++-...-.|++.|.-+ ..+...+.|....+.+.| ++.+.+.++.
T Consensus 163 ~~~~a~~~~~~~~di~~~~w~Kl~~N~~inpltall~~~~g~l~~~~~~~~l~~~~~~E~~~v~~~~g~~~~~~~~~~v~ 242 (307)
T COG1893 163 LFKEAGLEVELHPDILAAIWRKLVVNAAINPLTALLDCNNGELLENPEARALIRALVAEVVAVARAEGVELPEEVVERVL 242 (307)
T ss_pred HHHhCCCCeEEcHHHHHHHHHHHHhhhccchhhhhhcCCchHHhcChhHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 88888877766656656666665555433 345567889999999999 5664344443
Q ss_pred HccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 197 NTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 197 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
......+ ..++ +.|.++.. .+-.+ +.--=...+.+.++++|++.|..+.++++.+....
T Consensus 243 ~~~~~~~--~~~~---sSM~qDl~------~gr~t-Eid~i~G~vv~~a~~~gi~~P~~~~L~~lvk~~e~ 301 (307)
T COG1893 243 AVIRATD--AENY---SSMLQDLE------KGRPT-EIDAINGAVVRLAKKHGLATPVNDTLYALLKAKEA 301 (307)
T ss_pred HHHHhcc--cccC---chHHHHHH------cCCcc-cHHHHhhHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 3221100 0011 11111110 00000 00011235889999999999999999999886654
|
|
| >PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.74 E-value=3.2e-08 Score=79.81 Aligned_cols=143 Identities=13% Similarity=0.241 Sum_probs=86.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c-------------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||..+|..++.+|++|.+||++++..+...+ . .+....++++++ +||+||=|+|.
T Consensus 10 mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~dl~~~~-~adlViEai~E 88 (180)
T PF02737_consen 10 MGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARISFTTDLEEAV-DADLVIEAIPE 88 (180)
T ss_dssp HHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEEEESSGGGGC-TESEEEE-S-S
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcccccCHHHHh-hhheehhhccc
Confidence 8999999999999999999999886533221 1 256778899888 99999999998
Q ss_pred hhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC--CHhhHH
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG--DKSSLE 135 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~ 135 (286)
.-.++.-+.. .+.+..+++.++...|+..+. .++++.+. +.-+++..-.+..+.. ....=++.+. +++.++
T Consensus 89 ~l~~K~~~~~--~l~~~~~~~~ilasnTSsl~i--~~la~~~~-~p~R~ig~Hf~~P~~~--~~lVEvv~~~~T~~~~~~ 161 (180)
T PF02737_consen 89 DLELKQELFA--ELDEICPPDTILASNTSSLSI--SELAAALS-RPERFIGMHFFNPPHL--MPLVEVVPGPKTSPETVD 161 (180)
T ss_dssp SHHHHHHHHH--HHHCCS-TTSEEEE--SSS-H--HHHHTTSS-TGGGEEEEEE-SSTTT----EEEEEE-TTS-HHHHH
T ss_pred cHHHHHHHHH--HHHHHhCCCceEEecCCCCCH--HHHHhccC-cCceEEEEeccccccc--CceEEEeCCCCCCHHHHH
Confidence 7777654432 255566777777654333332 34444432 2223443322222211 1111233333 588999
Q ss_pred HHHHHHHHhcCCeEecC
Q psy764 136 KAKPILKCMGRNIVHCG 152 (286)
Q Consensus 136 ~~~~ll~~~g~~v~~~g 152 (286)
++..+++.+|+.++.+.
T Consensus 162 ~~~~~~~~~gk~pv~v~ 178 (180)
T PF02737_consen 162 RVRALLRSLGKTPVVVK 178 (180)
T ss_dssp HHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHCCCEEEEec
Confidence 99999999999887764
|
1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B .... |
| >PRK06436 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.7e-08 Score=85.08 Aligned_cols=95 Identities=14% Similarity=0.289 Sum_probs=79.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc-ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.|...|++|.+|||+... .+.. ...++++++++||+|++++|...+.+.++.. +.+..+++|.+
T Consensus 133 IG~~vA~~l~afG~~V~~~~r~~~~------~~~~~~~~~l~ell~~aDiv~~~lp~t~~T~~li~~--~~l~~mk~ga~ 204 (303)
T PRK06436 133 IGRRVALLAKAFGMNIYAYTRSYVN------DGISSIYMEPEDIMKKSDFVLISLPLTDETRGMINS--KMLSLFRKGLA 204 (303)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcc------cCcccccCCHHHHHhhCCEEEECCCCCchhhcCcCH--HHHhcCCCCeE
Confidence 7999999888889999999998532 2332 2568999999999999999998898888853 56777999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~ 104 (286)
+|++|...+.....+.+.+.+..+
T Consensus 205 lIN~sRG~~vd~~aL~~aL~~g~i 228 (303)
T PRK06436 205 IINVARADVVDKNDMLNFLRNHND 228 (303)
T ss_pred EEECCCccccCHHHHHHHHHcCCc
Confidence 999999999999999988877534
|
|
| >PRK13243 glyoxylate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.8e-08 Score=85.86 Aligned_cols=99 Identities=17% Similarity=0.218 Sum_probs=82.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|...|++|.+|||++.... ....|.. ..++.+++++||+|++|+|...+.+.++.. ..++.+++|.++
T Consensus 161 IG~~vA~~l~~~G~~V~~~d~~~~~~~-~~~~~~~-~~~l~ell~~aDiV~l~lP~t~~T~~~i~~--~~~~~mk~ga~l 236 (333)
T PRK13243 161 IGQAVARRAKGFGMRILYYSRTRKPEA-EKELGAE-YRPLEELLRESDFVSLHVPLTKETYHMINE--ERLKLMKPTAIL 236 (333)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCChhh-HHHcCCE-ecCHHHHHhhCCEEEEeCCCChHHhhccCH--HHHhcCCCCeEE
Confidence 899999999999999999999875432 2334554 458999999999999999998888888854 467789999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
||+|+...-....+.+.+.+..+
T Consensus 237 IN~aRg~~vd~~aL~~aL~~g~i 259 (333)
T PRK13243 237 VNTARGKVVDTKALVKALKEGWI 259 (333)
T ss_pred EECcCchhcCHHHHHHHHHcCCe
Confidence 99999999999999888876543
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=9.3e-08 Score=84.38 Aligned_cols=97 Identities=15% Similarity=0.242 Sum_probs=80.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+++|+.|...|++|.+|||+++..... .....++.+++++||+|++|+|...+.+.++.. ++++.+++|.++
T Consensus 157 IG~~vA~~L~~~G~~V~~~d~~~~~~~~~----~~~~~~l~ell~~aDiVil~lP~t~~t~~li~~--~~l~~mk~gavl 230 (330)
T PRK12480 157 IGAATAKIYAGFGATITAYDAYPNKDLDF----LTYKDSVKEAIKDADIISLHVPANKESYHLFDK--AMFDHVKKGAIL 230 (330)
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhHhhhh----hhccCCHHHHHhcCCEEEEeCCCcHHHHHHHhH--HHHhcCCCCcEE
Confidence 89999999999999999999998654322 334568999999999999999988877777753 577889999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|+++-..--....+.+.+.+..+
T Consensus 231 IN~aRG~~vd~~aL~~aL~~g~i 253 (330)
T PRK12480 231 VNAARGAVINTPDLIAAVNDGTL 253 (330)
T ss_pred EEcCCccccCHHHHHHHHHcCCe
Confidence 99998887777888888876544
|
|
| >PRK13403 ketol-acid reductoisomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.7e-08 Score=83.52 Aligned_cols=138 Identities=16% Similarity=0.198 Sum_probs=89.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|++|...|++|++|||.....+.....|..+. +++|+++.||+|++++|++.+ +.++.. ++++.+++|.++
T Consensus 27 IG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~G~~v~-sl~Eaak~ADVV~llLPd~~t-~~V~~~--eil~~MK~GaiL 102 (335)
T PRK13403 27 QGHAQAQNLRDSGVEVVVGVRPGKSFEVAKADGFEVM-SVSEAVRTAQVVQMLLPDEQQ-AHVYKA--EVEENLREGQML 102 (335)
T ss_pred HHHHHHHHHHHCcCEEEEEECcchhhHHHHHcCCEEC-CHHHHHhcCCEEEEeCCChHH-HHHHHH--HHHhcCCCCCEE
Confidence 8999999999999999999877555455555687654 899999999999999998655 788752 588889999987
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc-eEeccCCCCHHhh-----hcCceEEEe-c--CCHhhHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT-FLDAPVSGGTKAA-----QEATLTFMV-G--GDKSSLEKAKPILKCMGRN 147 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~-~~~~pv~g~~~~a-----~~g~l~~~~-g--g~~~~~~~~~~ll~~~g~~ 147 (286)
+-.-.-..-.. ......++. ++-+|=..+..-- ..|...+++ - -+..+.+.+..+-..+|..
T Consensus 103 ~f~hgfni~~~----~i~pp~~vdv~mvaPKgpG~~vR~~y~~G~Gvp~l~av~qd~sg~a~~~ala~a~~iG~~ 173 (335)
T PRK13403 103 LFSHGFNIHFG----QINPPSYVDVAMVAPKSPGHLVRRVFQEGNGVPALVAVHQDATGTALHVALAYAKGVGCT 173 (335)
T ss_pred EECCCcceecC----ceeCCCCCeEEEECCCCCChHHHHHHHcCCCceeEEEEEECCCCcHHHHHHHHHHHcCCC
Confidence 75433221111 122233443 3345643333321 233322222 1 1234677788888888764
|
|
| >PRK08605 D-lactate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-07 Score=82.99 Aligned_cols=98 Identities=17% Similarity=0.243 Sum_probs=78.6
Q ss_pred ccHHHHHHHH-hCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQ-FQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||+.+|++|+ ..|.+|++||+++.+.. ..++....++.+++++||+|++++|.....+.++.. +..+.+++|.+
T Consensus 157 IG~~vA~~L~~~~g~~V~~~d~~~~~~~---~~~~~~~~~l~ell~~aDvIvl~lP~t~~t~~li~~--~~l~~mk~gai 231 (332)
T PRK08605 157 IGLAVAKIFAKGYGSDVVAYDPFPNAKA---ATYVDYKDTIEEAVEGADIVTLHMPATKYNHYLFNA--DLFKHFKKGAV 231 (332)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccHhH---HhhccccCCHHHHHHhCCEEEEeCCCCcchhhhcCH--HHHhcCCCCcE
Confidence 7999999994 46889999999875431 224555678999999999999999987776665532 36777899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~ 104 (286)
+||+|+........+.+.+.+..+
T Consensus 232 lIN~sRG~~vd~~aL~~aL~~g~i 255 (332)
T PRK08605 232 FVNCARGSLVDTKALLDALDNGLI 255 (332)
T ss_pred EEECCCCcccCHHHHHHHHHhCCe
Confidence 999999999999999988876544
|
|
| >PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.7e-06 Score=84.05 Aligned_cols=182 Identities=13% Similarity=0.110 Sum_probs=115.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHH-----------HHc-------------CCcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTL-----------AKE-------------GANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~-------------g~~~~~s~~e~~~~adivi~~v~ 56 (286)
.||..+|..++.+||+|++||++++..+.. .+. .++.+.++ +.+++||+||=|+|
T Consensus 323 ~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~ 401 (715)
T PRK11730 323 IMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPTLDY-AGFERVDVVVEAVV 401 (715)
T ss_pred hhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEeccc
Confidence 489999999999999999999998865432 111 24555666 45689999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceE-EEecC--CHhh
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT-FMVGG--DKSS 133 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~-~~~gg--~~~~ 133 (286)
..-+++.-++. .+-+.++++.++..-|+..|. .++++.+. +.-+++..-.+..+... .++ ++.|. +++.
T Consensus 402 E~l~~K~~vf~--~l~~~~~~~~ilasNTSsl~i--~~la~~~~-~p~r~~g~Hff~P~~~~---~lVEvv~g~~T~~~~ 473 (715)
T PRK11730 402 ENPKVKAAVLA--EVEQKVREDTILASNTSTISI--SLLAKALK-RPENFCGMHFFNPVHRM---PLVEVIRGEKTSDET 473 (715)
T ss_pred CcHHHHHHHHH--HHHhhCCCCcEEEEcCCCCCH--HHHHhhcC-CCccEEEEecCCccccc---ceEEeeCCCCCCHHH
Confidence 87777664443 255556677766543333332 24444443 32334433222222211 122 33332 5889
Q ss_pred HHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Q psy764 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS 200 (286)
Q Consensus 134 ~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~ 200 (286)
++.+..+++.+|+.++.+.+. -|. +.|=+.. ..++|++.+.+ .|.+++++-.++..+.
T Consensus 474 ~~~~~~~~~~lgk~pv~v~d~-pGf----v~nRi~~---~~~~ea~~lv~-~Ga~~e~ID~a~~~~~ 531 (715)
T PRK11730 474 IATVVAYASKMGKTPIVVNDC-PGF----FVNRVLF---PYFAGFSQLLR-DGADFRQIDKVMEKQF 531 (715)
T ss_pred HHHHHHHHHHhCCceEEecCc-Cch----hHHHHHH---HHHHHHHHHHH-cCCCHHHHHHHHHhhC
Confidence 999999999999999888752 222 2344433 34578887766 4588888888776543
|
|
| >COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=4e-06 Score=72.51 Aligned_cols=183 Identities=17% Similarity=0.205 Sum_probs=114.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------cC-------------CcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------EG-------------ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adivi~~v~ 56 (286)
.||..+|..++..||+|.++|++++.+++..+ .| ++...++. .+++||+||-+++
T Consensus 13 ~MG~gIA~~~A~~G~~V~l~D~~~~~~~~~~~~i~~~l~k~~~~g~l~~~~~~~~l~~i~~~~~~~-~l~~~DlVIEAv~ 91 (307)
T COG1250 13 VMGAGIAAVFALAGYDVVLKDISPEALERALAYIEKNLEKLVEKGKLTEEEADAALARITPTTDLA-ALKDADLVIEAVV 91 (307)
T ss_pred chhHHHHHHHhhcCCceEEEeCCHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHhhccccCchh-HhccCCEEEEecc
Confidence 39999999999988999999999765433221 22 34444444 6789999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEEEE-cCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHh
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIVID-SSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKS 132 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~ivid-~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~ 132 (286)
-..+++.-++. .+-+..+++.++-. +|+.++. ++++.+ ++.-+|+..-.++.+.- -.|+=++.| +++
T Consensus 92 E~levK~~vf~--~l~~~~~~~aIlASNTSsl~it---~ia~~~-~rper~iG~HFfNP~~~---m~LVEvI~g~~T~~e 162 (307)
T COG1250 92 EDLELKKQVFA--ELEALAKPDAILASNTSSLSIT---ELAEAL-KRPERFIGLHFFNPVPL---MPLVEVIRGEKTSDE 162 (307)
T ss_pred ccHHHHHHHHH--HHHhhcCCCcEEeeccCCCCHH---HHHHHh-CCchhEEEEeccCCCCc---ceeEEEecCCCCCHH
Confidence 88777654443 13334455555542 3333333 334443 33223333222232221 223334444 478
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
.++++.++.+.+++.++...+. .|. +.|-+. ...+.|++.+...-..+++++-.++..+.|
T Consensus 163 ~~~~~~~~~~~igK~~vv~~D~-pGF----i~NRil---~~~~~eA~~l~~eGva~~e~ID~~~~~~~G 223 (307)
T COG1250 163 TVERVVEFAKKIGKTPVVVKDV-PGF----IVNRLL---AALLNEAIRLLEEGVATPEEIDAAMRQGLG 223 (307)
T ss_pred HHHHHHHHHHHcCCCCEeecCC-Cce----ehHhHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhccC
Confidence 9999999999999876554541 222 224333 345688988888888999999998886544
|
|
| >PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.56 E-value=1.6e-07 Score=80.86 Aligned_cols=64 Identities=17% Similarity=0.262 Sum_probs=55.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.+||.+|.++|++|++|+++.. ++++++++||+||+|++.+..++.++ +++|.+
T Consensus 170 ivG~PmA~~L~~~gatVtv~~~~t~--------------~l~e~~~~ADIVIsavg~~~~v~~~~---------ik~Gai 226 (301)
T PRK14194 170 IVGKPMAALLLQAHCSVTVVHSRST--------------DAKALCRQADIVVAAVGRPRLIDADW---------LKPGAV 226 (301)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCCC--------------CHHHHHhcCCEEEEecCChhcccHhh---------ccCCcE
Confidence 4899999999999999999987642 78999999999999999987766654 568999
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
|||+|+.
T Consensus 227 VIDvgin 233 (301)
T PRK14194 227 VIDVGIN 233 (301)
T ss_pred EEEeccc
Confidence 9999864
|
|
| >TIGR02437 FadB fatty oxidation complex, alpha subunit FadB | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.8e-06 Score=82.44 Aligned_cols=182 Identities=13% Similarity=0.130 Sum_probs=116.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c-------------CCcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adivi~~v~ 56 (286)
.||..+|..++.+|++|++||++++..++..+ . .++.+.+. +.+++||+||=|++
T Consensus 323 ~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav~ 401 (714)
T TIGR02437 323 IMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPTLSY-AGFDNVDIVVEAVV 401 (714)
T ss_pred hHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEeCCH-HHhcCCCEEEEcCc
Confidence 48999999999999999999999887543221 1 24555666 44689999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHhh
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKSS 133 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~ 133 (286)
-+-+++.-++. .+-+.++++.++..-|+..|. .++++.+. +.-+++..-.+..+.. -.++=++.| ++++
T Consensus 402 E~l~~K~~vf~--~l~~~~~~~~ilasnTS~l~i--~~ia~~~~-~p~r~ig~Hff~P~~~---~~lvEvv~g~~Ts~~~ 473 (714)
T TIGR02437 402 ENPKVKAAVLA--EVEQHVREDAILASNTSTISI--SLLAKALK-RPENFCGMHFFNPVHR---MPLVEVIRGEKSSDET 473 (714)
T ss_pred ccHHHHHHHHH--HHHhhCCCCcEEEECCCCCCH--HHHHhhcC-CcccEEEEecCCCccc---CceEeecCCCCCCHHH
Confidence 87777654443 255566777776543333232 23444432 2223333222222111 122323333 5789
Q ss_pred HHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Q psy764 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS 200 (286)
Q Consensus 134 ~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~ 200 (286)
++++..+++.+|+.++.+.+. -| .+.|=+.. ..+.|++.+.+ .|.+++++-.++..+.
T Consensus 474 ~~~~~~~~~~lgk~pv~v~d~-pG----fi~NRl~~---~~~~ea~~l~~-eG~~~~~ID~a~~~~~ 531 (714)
T TIGR02437 474 IATVVAYASKMGKTPIVVNDC-PG----FFVNRVLF---PYFGGFSKLLR-DGADFVRIDKVMEKQF 531 (714)
T ss_pred HHHHHHHHHHcCCEEEEeCCc-cc----chHHHHHH---HHHHHHHHHHH-CCCCHHHHHHHHHhcC
Confidence 999999999999999888752 22 23355433 34688888875 5699999888876543
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399. |
| >PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.3e-06 Score=82.04 Aligned_cols=179 Identities=13% Similarity=0.116 Sum_probs=113.5
Q ss_pred CccHHHHHHHH-hCCCcEEEEcCCchHHHHHH-----------Hc-------------CCcccCCHHHHhhcCcEEEEec
Q psy764 1 MISTLKLFFLQ-FQGHDVIVYDKNTDASQTLA-----------KE-------------GANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 1 ~~G~~lA~~L~-~~G~~V~~~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e~~~~adivi~~v 55 (286)
.||..+|..++ .+|++|++||++++..+... +. .++.+++. +.+++||+||=|+
T Consensus 319 ~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~aDlViEav 397 (708)
T PRK11154 319 LMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGTTDY-RGFKHADVVIEAV 397 (708)
T ss_pred hhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEeCCh-HHhccCCEEeecc
Confidence 48999999999 88999999999987544321 11 24555666 5678999999999
Q ss_pred CChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHh
Q psy764 56 PASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKS 132 (286)
Q Consensus 56 ~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~ 132 (286)
|..-.++.-++. .+-+..+++.++...|+..|. .++++.+. +.-+|+..-.+..+... .++=++-| +++
T Consensus 398 ~E~~~~K~~v~~--~le~~~~~~~ilasnTS~l~i--~~la~~~~-~p~r~ig~Hff~P~~~~---~lVEvv~g~~Ts~~ 469 (708)
T PRK11154 398 FEDLALKQQMVA--EVEQNCAPHTIFASNTSSLPI--GQIAAAAA-RPEQVIGLHYFSPVEKM---PLVEVIPHAKTSAE 469 (708)
T ss_pred cccHHHHHHHHH--HHHhhCCCCcEEEECCCCCCH--HHHHHhcC-cccceEEEecCCccccC---ceEEEECCCCCCHH
Confidence 987777654443 255567788777644333333 23444432 22344433222222211 12223333 578
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
.++.+..+++.+|+.++.+.+ ..|.. .|=+. ...++|++.+.+. |++++++-.++.
T Consensus 470 ~~~~~~~~~~~~gk~pv~v~d-~pGfi----~nRl~---~~~~~EA~~lv~e-Gv~~~dID~a~~ 525 (708)
T PRK11154 470 TIATTVALAKKQGKTPIVVRD-GAGFY----VNRIL---APYINEAARLLLE-GEPIEHIDAALV 525 (708)
T ss_pred HHHHHHHHHHHcCCceEEEec-cCcHH----HHHHH---HHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 999999999999998888865 22222 23333 3456888888775 888888777654
|
|
| >TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.8e-06 Score=81.47 Aligned_cols=179 Identities=12% Similarity=0.075 Sum_probs=112.1
Q ss_pred CccHHHHHHHH-hCCCcEEEEcCCchHHHHHH-----------Hc-------------CCcccCCHHHHhhcCcEEEEec
Q psy764 1 MISTLKLFFLQ-FQGHDVIVYDKNTDASQTLA-----------KE-------------GANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 1 ~~G~~lA~~L~-~~G~~V~~~dr~~~~~~~l~-----------~~-------------g~~~~~s~~e~~~~adivi~~v 55 (286)
.||..+|..++ ++|++|++||++++..+... +. .++.++++ +.+++||+||=|+
T Consensus 314 ~mG~~iA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~adlViEav 392 (699)
T TIGR02440 314 LMGGGIASVTATKAGIPVRIKDINPQGINNALKYAWKLLDKGVKRRHMTPAERDNQMALITGTTDY-RGFKDVDIVIEAV 392 (699)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHcCeEEeCCh-HHhccCCEEEEec
Confidence 38999999998 58999999999987544321 11 24455666 4678999999999
Q ss_pred CChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHh
Q psy764 56 PASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKS 132 (286)
Q Consensus 56 ~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~ 132 (286)
|..-+++.-++. .+-+..+++.++..-|+..|. .++++.+. +.-+++..-.+..+... .++=++.| +++
T Consensus 393 ~E~l~~K~~v~~--~l~~~~~~~~ilasnTS~l~i--~~la~~~~-~p~r~~g~HffnP~~~~---~lVEvv~g~~T~~~ 464 (699)
T TIGR02440 393 FEDLALKHQMVK--DIEQECAAHTIFASNTSSLPI--GQIAAAAS-RPENVIGLHYFSPVEKM---PLVEVIPHAGTSEQ 464 (699)
T ss_pred cccHHHHHHHHH--HHHhhCCCCcEEEeCCCCCCH--HHHHHhcC-CcccEEEEecCCccccC---ceEEEeCCCCCCHH
Confidence 988777654432 255556677666543322222 24444443 32334433222222211 12333333 578
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
.++.+..+++.+|+.++.+.+. -|. +.|-+. ...++|++.+.+ .|++++++-.++.
T Consensus 465 ~~~~~~~~~~~~gk~pv~v~d~-pGf----i~nRl~---~~~~~Ea~~l~~-~G~~~~dID~a~~ 520 (699)
T TIGR02440 465 TIATTVALAKKQGKTPIVVADK-AGF----YVNRIL---APYMNEAARLLL-EGEPVEHIDKALV 520 (699)
T ss_pred HHHHHHHHHHHcCCeEEEEccc-cch----HHHHHH---HHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 9999999999999999988752 222 224333 345688877766 6788888777763
|
Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog. |
| >TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.1e-07 Score=86.15 Aligned_cols=101 Identities=19% Similarity=0.241 Sum_probs=83.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.|...|.+|.+||++... +.....|+...+++.|++++||+|++++|...+.+.++.. +.++.+++|.++
T Consensus 149 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--~~l~~mk~ga~l 225 (525)
T TIGR01327 149 IGSIVAKRAKAFGMKVLAYDPYISP-ERAEQLGVELVDDLDELLARADFITVHTPLTPETRGLIGA--EELAKMKKGVII 225 (525)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEcCCHHHHHhhCCEEEEccCCChhhccCcCH--HHHhcCCCCeEE
Confidence 7999999999999999999986322 2234457766678999999999999999988888888853 467789999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
||++....-....+.+.+.+..+.
T Consensus 226 IN~aRG~~vde~aL~~aL~~g~i~ 249 (525)
T TIGR01327 226 VNCARGGIIDEAALYEALEEGHVR 249 (525)
T ss_pred EEcCCCceeCHHHHHHHHHcCCee
Confidence 999999988888998888776543
|
This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli. |
| >PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.6e-07 Score=80.93 Aligned_cols=100 Identities=13% Similarity=0.172 Sum_probs=79.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|.+|||++++...+.. .....++.+++++||+|++++|...+.+.++.. +.+..+++|.++
T Consensus 147 IG~~vA~~l~afG~~V~~~~~~~~~~~~~~~--~~~~~~l~e~l~~aDvvv~~lPlt~~T~~li~~--~~l~~mk~ga~l 222 (312)
T PRK15469 147 LGSKVAQSLQTWGFPLRCWSRSRKSWPGVQS--FAGREELSAFLSQTRVLINLLPNTPETVGIINQ--QLLEQLPDGAYL 222 (312)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCCCCCCcee--ecccccHHHHHhcCCEEEECCCCCHHHHHHhHH--HHHhcCCCCcEE
Confidence 7999999999999999999998754321111 112457899999999999999999999998863 567789999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
|+++-...-.-..+.+.+.+..+.
T Consensus 223 IN~aRG~vVde~aL~~aL~~g~i~ 246 (312)
T PRK15469 223 LNLARGVHVVEDDLLAALDSGKVK 246 (312)
T ss_pred EECCCccccCHHHHHHHHhcCCee
Confidence 999988877777888887765443
|
|
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.1e-07 Score=74.99 Aligned_cols=99 Identities=19% Similarity=0.256 Sum_probs=77.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.|..-|.+|++|||+..........+. ...+++|++++||+|++++|...+.+.++.. ..+..+++|.++
T Consensus 47 IG~~vA~~l~~fG~~V~~~d~~~~~~~~~~~~~~-~~~~l~ell~~aDiv~~~~plt~~T~~li~~--~~l~~mk~ga~l 123 (178)
T PF02826_consen 47 IGRAVARRLKAFGMRVIGYDRSPKPEEGADEFGV-EYVSLDELLAQADIVSLHLPLTPETRGLINA--EFLAKMKPGAVL 123 (178)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSCHHHHHHHHTTE-EESSHHHHHHH-SEEEE-SSSSTTTTTSBSH--HHHHTSTTTEEE
T ss_pred CcCeEeeeeecCCceeEEecccCChhhhcccccc-eeeehhhhcchhhhhhhhhccccccceeeee--eeeeccccceEE
Confidence 7999999999999999999999886654555565 4559999999999999999976666666653 456678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQ 103 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g 103 (286)
|+++-...-.-..+.+.+.+.-
T Consensus 124 vN~aRG~~vde~aL~~aL~~g~ 145 (178)
T PF02826_consen 124 VNVARGELVDEDALLDALESGK 145 (178)
T ss_dssp EESSSGGGB-HHHHHHHHHTTS
T ss_pred EeccchhhhhhhHHHHHHhhcc
Confidence 9999887777778888877653
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.9e-06 Score=82.58 Aligned_cols=177 Identities=13% Similarity=0.115 Sum_probs=111.9
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c-------------CCcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E-------------GANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-------------g~~~~~s~~e~~~~adivi~~v~ 56 (286)
.||..+|..++.+|++|++||++++.+++..+ . .++.+.+++ .+++||+||=+|+
T Consensus 345 ~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlViEAv~ 423 (737)
T TIGR02441 345 LMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPTLDYS-GFKNADMVIEAVF 423 (737)
T ss_pred HhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEeCCHH-HhccCCeehhhcc
Confidence 48999999999999999999999887544211 1 245566675 5689999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEEEE-cCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEec---CCHh
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIVID-SSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG---GDKS 132 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~ivid-~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g---g~~~ 132 (286)
.+-+++.-++. .+-+.++++.++.. +|+.++ .++++.+. +.-+++..-.+..+.. -.++=++. .+++
T Consensus 424 E~l~~K~~vf~--~l~~~~~~~~ilasNTSsl~i---~~la~~~~-~p~r~ig~Hff~P~~~---m~LvEvv~g~~Ts~~ 494 (737)
T TIGR02441 424 EDLSLKHKVIK--EVEAVVPPHCIIASNTSALPI---KDIAAVSS-RPEKVIGMHYFSPVDK---MQLLEIITHDGTSKD 494 (737)
T ss_pred ccHHHHHHHHH--HHHhhCCCCcEEEEcCCCCCH---HHHHhhcC-CccceEEEeccCCccc---CceEEEeCCCCCCHH
Confidence 88777764443 25556677777653 333333 23444432 2223333222221111 12222333 2578
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVI 196 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~ 196 (286)
.++++..+++.+|+.++.+.+. -|. +.|=+. ...+.|++.+. ..|++++++-.++
T Consensus 495 ~~~~~~~~~~~lgk~pv~v~d~-pGF----i~NRi~---~~~~~ea~~lv-~eGv~~~~ID~a~ 549 (737)
T TIGR02441 495 TLASAVAVGLKQGKVVIVVKDG-PGF----YTTRCL---GPMLAEVIRLL-QEGVDPKKLDKLT 549 (737)
T ss_pred HHHHHHHHHHHCCCeEEEECCc-CCc----hHHHHH---HHHHHHHHHHH-HcCCCHHHHHHHH
Confidence 9999999999999999888752 222 234433 34567887776 4478888877764
|
Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16). |
| >PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.47 E-value=5.4e-07 Score=84.53 Aligned_cols=99 Identities=22% Similarity=0.272 Sum_probs=82.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|.+|||+... +.....|+... ++.|++++||+|++++|...+.+.++.. +.++.+++|.++
T Consensus 151 IG~~vA~~l~~fG~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDiV~l~lP~t~~t~~li~~--~~l~~mk~ga~l 226 (526)
T PRK13581 151 IGSEVAKRAKAFGMKVIAYDPYISP-ERAAQLGVELV-SLDELLARADFITLHTPLTPETRGLIGA--EELAKMKPGVRI 226 (526)
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCCEEE-cHHHHHhhCCEEEEccCCChHhhcCcCH--HHHhcCCCCeEE
Confidence 7999999999999999999996432 23344577666 8999999999999999998888988853 477889999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
||++....-....+.+.+.+..+
T Consensus 227 IN~aRG~~vde~aL~~aL~~g~i 249 (526)
T PRK13581 227 INCARGGIIDEAALAEALKSGKV 249 (526)
T ss_pred EECCCCceeCHHHHHHHHhcCCe
Confidence 99999998888889888876543
|
|
| >PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.45 E-value=4.5e-07 Score=78.18 Aligned_cols=63 Identities=17% Similarity=0.294 Sum_probs=53.8
Q ss_pred CccHHHHHHHHhCCCcEEEEc-CCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYD-KNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~d-r~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
.||.+||.+|.++|++|++|+ |++ ++++++++||+||+|++.+..++.++ +++|.
T Consensus 169 ~mG~PmA~~L~~~g~tVtv~~~rT~---------------~l~e~~~~ADIVIsavg~~~~v~~~~---------lk~Ga 224 (296)
T PRK14188 169 LVGKPMAQLLLAANATVTIAHSRTR---------------DLPAVCRRADILVAAVGRPEMVKGDW---------IKPGA 224 (296)
T ss_pred chHHHHHHHHHhCCCEEEEECCCCC---------------CHHHHHhcCCEEEEecCChhhcchhe---------ecCCC
Confidence 389999999999999999995 764 46889999999999999987666554 56899
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
+|||++..
T Consensus 225 vVIDvGin 232 (296)
T PRK14188 225 TVIDVGIN 232 (296)
T ss_pred EEEEcCCc
Confidence 99999864
|
|
| >PRK06141 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.7e-07 Score=80.17 Aligned_cols=98 Identities=18% Similarity=0.213 Sum_probs=73.9
Q ss_pred ccHHHHHHHH--hCCCcEEEEcCCchHHHHHHHc----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQ--FQGHDVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~--~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..++..+. +...+|++|||++++.+.+.+. | +..+.++.++++++|+|++|.+.+ +.++.. +
T Consensus 136 ~a~~~~~al~~~~~~~~V~V~~Rs~~~a~~~a~~~~~~g~~~~~~~~~~~av~~aDIVi~aT~s~---~pvl~~-----~ 207 (314)
T PRK06141 136 LASLLALAHASVRPIKQVRVWGRDPAKAEALAAELRAQGFDAEVVTDLEAAVRQADIISCATLST---EPLVRG-----E 207 (314)
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhcCCceEEeCCHHHHHhcCCEEEEeeCCC---CCEecH-----H
Confidence 5667776444 3447899999999998888654 4 566788999999999998888864 344431 3
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+++|+ +|++++..+...+++...+.+++..|+|
T Consensus 208 ~l~~g~-~i~~ig~~~~~~~El~~~~~~~a~~~vD 241 (314)
T PRK06141 208 WLKPGT-HLDLVGNFTPDMRECDDEAIRRASVYVD 241 (314)
T ss_pred HcCCCC-EEEeeCCCCcccccCCHHHHhcCcEEEc
Confidence 467887 7888888888888888777777766776
|
|
| >PRK06444 prephenate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.1e-05 Score=64.15 Aligned_cols=118 Identities=11% Similarity=0.133 Sum_probs=79.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+++.|.++||.|+ +.+||+||+|+|- ..+.+++.. +. .+|
T Consensus 12 mG~~~~~~~~~~g~~v~--------------------------~~~~DlVilavPv-~~~~~~i~~---~~------~~v 55 (197)
T PRK06444 12 LGRVLCSILDDNGLGVY--------------------------IKKADHAFLSVPI-DAALNYIES---YD------NNF 55 (197)
T ss_pred HHHHHHHHHHhCCCEEE--------------------------ECCCCEEEEeCCH-HHHHHHHHH---hC------CeE
Confidence 89999999999999986 3689999999995 566777653 22 379
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcC--ceEEEec--CCHhhHHHHHHHHHHhcCCeEecCCcch
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEA--TLTFMVG--GDKSSLEKAKPILKCMGRNIVHCGDSGN 156 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g--~l~~~~g--g~~~~~~~~~~ll~~~g~~v~~~g~~g~ 156 (286)
+|.++++-... + ....|+. .|++|. ..+..+ ...+++. .+++.++.++.+++ |.+++.+.+..+
T Consensus 56 ~Dv~SvK~~i~----~----~~~~~vg~HPMfGp-~~a~~~lf~~~iv~~~~~~~~~~~~~~~l~~--G~~~~~~t~eeH 124 (197)
T PRK06444 56 VEISSVKWPFK----K----YSGKIVSIHPLFGP-MSYNDGVHRTVIFINDISRDNYLNEINEMFR--GYHFVEMTADEH 124 (197)
T ss_pred EeccccCHHHH----H----hcCCEEecCCCCCC-CcCcccccceEEEECCCCCHHHHHHHHHHHc--CCEEEEeCHHHH
Confidence 99999876432 1 2346775 699983 333221 2233342 23566778888888 778888876555
Q ss_pred HHHHHHHHHH
Q psy764 157 GQVAKLCNNM 166 (286)
Q Consensus 157 a~~~Kl~~n~ 166 (286)
-..+-.++.+
T Consensus 125 D~~~A~ishL 134 (197)
T PRK06444 125 DLLMSEIMVK 134 (197)
T ss_pred HHHHHHHHHH
Confidence 5555544333
|
|
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.1e-06 Score=74.38 Aligned_cols=99 Identities=16% Similarity=0.153 Sum_probs=74.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|...|.+|+++||++++.+.+.+.|.... +++.+.++++|+||.++|..-.-+ ...+.++++.
T Consensus 162 iG~avA~~L~~~G~~V~v~~R~~~~~~~~~~~g~~~~~~~~l~~~l~~aDiVint~P~~ii~~-------~~l~~~k~~a 234 (287)
T TIGR02853 162 TGMTIARTFSALGARVFVGARSSADLARITEMGLIPFPLNKLEEKVAEIDIVINTIPALVLTA-------DVLSKLPKHA 234 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeeecHHHHHHHhccCCEEEECCChHHhCH-------HHHhcCCCCe
Confidence 7899999999999999999999988777766665543 356788899999999999641111 2445578899
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEecc
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDAP 110 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~p 110 (286)
++||+++....+-. +..++.|+..+-+|
T Consensus 235 liIDlas~Pg~tdf---~~Ak~~G~~a~~~~ 262 (287)
T TIGR02853 235 VIIDLASKPGGTDF---EYAKKRGIKALLAP 262 (287)
T ss_pred EEEEeCcCCCCCCH---HHHHHCCCEEEEeC
Confidence 99999886655433 34567787776555
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >KOG2711|consensus | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.3e-06 Score=70.56 Aligned_cols=234 Identities=16% Similarity=0.101 Sum_probs=136.3
Q ss_pred CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCc----h-HHHHHHHHHH---hcCCce
Q psy764 35 ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDP----Q-VPQTLSNLAR---EKQITF 106 (286)
Q Consensus 35 ~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p----~-~~~~~~~~~~---~~g~~~ 106 (286)
+.+.+++.++++++|+++..+|. +.+..++++ +...++++...|.++..-. . ..+-+.+.+. .-.+.+
T Consensus 93 vvAv~dl~ea~~dADilvf~vPh-Qf~~~ic~~---l~g~vk~~~~aISL~KG~e~~~~g~~i~liS~iI~~~lgI~~~v 168 (372)
T KOG2711|consen 93 VVAVPDLVEAAKDADILVFVVPH-QFIPRICEQ---LKGYVKPGATAISLIKGVEVGEEGPGIRLISQIIHRALGIPCSV 168 (372)
T ss_pred eEecchHHHHhccCCEEEEeCCh-hhHHHHHHH---HhcccCCCCeEEEeecceeccCCCCceeehHHHHHHHhCCCcee
Confidence 57778999999999999999994 788999986 7778889999898875432 1 1222222222 223557
Q ss_pred EeccCCCCHHhhhcCceEEEecCCHhhHH-HHHHHHHHhcCCeEecCC---c--------------chHHHHHHHHHHHH
Q psy764 107 LDAPVSGGTKAAQEATLTFMVGGDKSSLE-KAKPILKCMGRNIVHCGD---S--------------GNGQVAKLCNNMLL 168 (286)
Q Consensus 107 ~~~pv~g~~~~a~~g~l~~~~gg~~~~~~-~~~~ll~~~g~~v~~~g~---~--------------g~a~~~Kl~~n~~~ 168 (286)
+.+|....+...++-+-..+.+-++.... .+..+|+.-..++..+.+ + |....+.+.+|+..
T Consensus 169 L~GaNiA~EVa~~~f~e~tIg~~~~~~~~~~l~~lf~~p~FrV~~~~D~~~VEi~GaLKNVvAiaaGfvdGL~~g~NTka 248 (372)
T KOG2711|consen 169 LMGANIASEVANEKFCETTIGYKDKKEAGILLKKLFRTPYFRVVVVEDADGVEICGALKNVVAIAAGFVDGLGLGNNTKA 248 (372)
T ss_pred ecCCchHHHHHhccccceeEeccchhhcchHHHHHhCCCceEEEEeccchHhHHhhhHHhHHHHhhhhhhhccCCcchHH
Confidence 77676666655555443333333333222 367777776665554443 2 33333447889999
Q ss_pred HHHHHHHHHHHHHHHHc-CC-CHHHHHH------HHHcc-CCCcc-cccccCCCC---CccccCCCCCCCCCCccchhHH
Q psy764 169 GVTMMGVAEAMNLGVKL-GM-NAKLLSD------VINTS-SGRCW-SSEVYNPVP---GVLSNVPASNNYNGGFKISLLA 235 (286)
Q Consensus 169 ~~~~~~~~Ea~~l~~~~-Gl-~~~~~~~------~~~~~-~~~s~-~~~~~~~~~---~~~~~~~~~~~~~~~f~~~~~~ 235 (286)
+++-.++.|+..+++.+ .- .++++.+ ++.+- .|++. ..+.+...- ......+..+ ....+.
T Consensus 249 Ai~r~Gl~Em~~F~~~f~p~~~~~t~~escGvaDlitTC~gGRNr~~aeafaktgk~~~~~E~ell~G------q~~QG~ 322 (372)
T KOG2711|consen 249 AIIRLGLLEMIKFATHFYPGSKPTTFFESCGVADLITTCYGGRNRKVAEAFAKTGKSLEELEKELLNG------QKLQGP 322 (372)
T ss_pred HHHHhhHHHHHHHHHHhCCCCCcceeeccccHHHHHHHHhcCccHHHHHHHHHcCCCHHHHHHHhhCC------CcccCc
Confidence 99999999999998864 22 3444333 22221 11111 001000000 0000000111 011223
Q ss_pred HHHHHHHHHHhhcCC--CchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 236 KDMKLAEDLANRCTA--QTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 236 kd~~~~~~~a~~~g~--~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
-..+.+.++++..|+ ..|++.+++++.. +++...++++.++..
T Consensus 323 ~Ta~~Vy~~L~~~~l~~kfPlftaVykI~~-------~~~~~~~lle~l~~~ 367 (372)
T KOG2711|consen 323 ATAKEVYELLQKKGLVEKFPLFTAVYKICY-------ERLPPQALLECLRNH 367 (372)
T ss_pred HHHHHHHHHHHHcChhhhCcHHHHHHHHHh-------cCCCHHHHHHHHhcc
Confidence 344568888888888 7899999988764 455666777777653
|
|
| >KOG2380|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=7.1e-06 Score=70.56 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=127.0
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHH-HcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccc-cCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLA-KEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILK-HAKP 77 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~-~l~~ 77 (286)
.||.-+|..|.++||.|.+.||+. ...++ ..|....+.+.+++ +.+|+|++|+.. ..++.|+.. .-. .++.
T Consensus 62 nmGqflAetli~aGh~li~hsRsd--yssaa~~yg~~~ft~lhdlcerhpDvvLlctsi-lsiekilat---ypfqrlrr 135 (480)
T KOG2380|consen 62 NMGQFLAETLIDAGHGLICHSRSD--YSSAAEKYGSAKFTLLHDLCERHPDVVLLCTSI-LSIEKILAT---YPFQRLRR 135 (480)
T ss_pred cHHHHHHHHHHhcCceeEecCcch--hHHHHHHhcccccccHHHHHhcCCCEEEEEehh-hhHHHHHHh---cCchhhcc
Confidence 389999999999999999999986 44443 44888888888887 469999999985 567887763 222 3789
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCc-eEEEe----cCC----HhhHHHHHHHHHHhcCC
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEAT-LTFMV----GGD----KSSLEKAKPILKCMGRN 147 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~-l~~~~----gg~----~~~~~~~~~ll~~~g~~ 147 (286)
|++++|..++.........+.+.+. +..+ -.|++|......... +.++. .|+ .+-++.+.++|.+.+.+
T Consensus 136 gtlfvdvlSvKefek~lfekYLPkd-fDIlctHpmfGPksvnh~wqglpfVydkvRig~~~~r~ercE~fleIf~cegck 214 (480)
T KOG2380|consen 136 GTLFVDVLSVKEFEKELFEKYLPKD-FDILCTHPMFGPKSVNHEWQGLPFVYDKVRIGYAASRPERCEFFLEIFACEGCK 214 (480)
T ss_pred ceeEeeeeecchhHHHHHHHhCccc-cceEeecCCcCCCcCCCccccCceEEEEeeccccccchHHHHHHHHHHHhcCCe
Confidence 9999999998877777777777654 4444 468888763332222 22222 343 67889999999999998
Q ss_pred eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC---HHHHHHHHHccCCCccc
Q psy764 148 IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMN---AKLLSDVINTSSGRCWS 205 (286)
Q Consensus 148 v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~---~~~~~~~~~~~~~~s~~ 205 (286)
++++.--..- |.......-.++++..-.+..++.+-++ .|.++++..+....+|.
T Consensus 215 mVemS~eeHD---kiaAdsQfVTHtagr~lg~aw~~syPintkGyEnlldLseniysdsfh 272 (480)
T KOG2380|consen 215 MVEMSYEEHD---KIAADSQFVTHTAGRSLGSAWAKSYPINTKGYENLLDLSENIYSDSFH 272 (480)
T ss_pred EEEEEeeccc---ccccchhHHHHHHHHHHHHhhhhhCceecccHHHHHHHHHHhhcchhh
Confidence 8887621110 1111111223333333334444444333 36666766655555664
|
|
| >TIGR00507 aroE shikimate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-06 Score=75.15 Aligned_cols=101 Identities=18% Similarity=0.200 Sum_probs=72.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----CCcccCCHHHH-hhcCcEEEEecCChh--HHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----GANMALSLSTL-ASGAEFIISMLPASQ--DVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e~-~~~adivi~~v~~~~--~~~~v~~~~~~l~~~ 74 (286)
+|.+++..|++.|++|+++||++++.+.+.+. +.....+..+. ..++|+||.|+|... .+.++.. ....
T Consensus 128 ~g~aia~~L~~~g~~v~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivInatp~gm~~~~~~~~~----~~~~ 203 (270)
T TIGR00507 128 AARAVALPLLKADCNVIIANRTVSKAEELAERFQRYGEIQAFSMDELPLHRVDLIINATSAGMSGNIDEPPV----PAEK 203 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhhcCceEEechhhhcccCccEEEECCCCCCCCCCCCCCC----CHHH
Confidence 68899999999999999999999988777543 32222334333 357999999999641 1211111 1234
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
++++.+++|+++..+.+ .+.+..+++|+.+++
T Consensus 204 l~~~~~v~D~~y~p~~T--~ll~~A~~~G~~~vd 235 (270)
T TIGR00507 204 LKEGMVVYDMVYNPGET--PFLAEAKSLGTKTID 235 (270)
T ss_pred cCCCCEEEEeccCCCCC--HHHHHHHHCCCeeeC
Confidence 67899999999987776 577788888988887
|
This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain. |
| >PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.6e-06 Score=66.17 Aligned_cols=81 Identities=19% Similarity=0.278 Sum_probs=58.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.|.+.|.||..+|.+|++..|..+ ..++..+.|..+. +.+|+++.+|+|++.+|| ..-.+++.. .+.+.+++|++
T Consensus 15 QG~a~AlNLrDSG~~V~Vglr~~s~s~~~A~~~Gf~v~-~~~eAv~~aDvV~~L~PD-~~q~~vy~~--~I~p~l~~G~~ 90 (165)
T PF07991_consen 15 QGHAHALNLRDSGVNVIVGLREGSASWEKAKADGFEVM-SVAEAVKKADVVMLLLPD-EVQPEVYEE--EIAPNLKPGAT 90 (165)
T ss_dssp HHHHHHHHHHHCC-EEEEEE-TTCHHHHHHHHTT-ECC-EHHHHHHC-SEEEE-S-H-HHHHHHHHH--HHHHHS-TT-E
T ss_pred HHHHHHHHHHhCCCCEEEEecCCCcCHHHHHHCCCeec-cHHHHHhhCCEEEEeCCh-HHHHHHHHH--HHHhhCCCCCE
Confidence 378899999999999999988766 6677777888765 799999999999999996 455777632 48889999998
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
++-...
T Consensus 91 L~fahG 96 (165)
T PF07991_consen 91 LVFAHG 96 (165)
T ss_dssp EEESSS
T ss_pred EEeCCc
Confidence 885443
|
This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C. |
| >PLN02928 oxidoreductase family protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=4.3e-06 Score=74.37 Aligned_cols=100 Identities=9% Similarity=0.066 Sum_probs=77.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH------------HHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL------------AKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l------------~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
||..+|+.|...|.+|++|||+..+.... ...+. ...++.+++++||+|++++|.....+.++..
T Consensus 170 IG~~vA~~l~afG~~V~~~dr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~ell~~aDiVvl~lPlt~~T~~li~~-- 246 (347)
T PLN02928 170 IGIELAKRLRPFGVKLLATRRSWTSEPEDGLLIPNGDVDDLVDEKG-GHEDIYEFAGEADIVVLCCTLTKETAGIVND-- 246 (347)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCChhhhhhhccccccccccccccC-cccCHHHHHhhCCEEEECCCCChHhhcccCH--
Confidence 79999999999999999999984332111 11112 3568999999999999999988888888764
Q ss_pred cccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCC
Q psy764 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 70 ~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~ 104 (286)
..++.+++|.++||++-..--.-..+.+.+.+.-+
T Consensus 247 ~~l~~Mk~ga~lINvaRG~lVde~AL~~AL~~g~i 281 (347)
T PLN02928 247 EFLSSMKKGALLVNIARGGLLDYDAVLAALESGHL 281 (347)
T ss_pred HHHhcCCCCeEEEECCCccccCHHHHHHHHHcCCe
Confidence 46777999999999998877777778887766543
|
|
| >PRK00257 erythronate-4-phosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.9e-06 Score=74.57 Aligned_cols=95 Identities=20% Similarity=0.226 Sum_probs=75.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChh----HHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ----DVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~----~~~~v~~~~~~l~~~l~~ 77 (286)
||+.+|+.|...|++|.+||+..... .+.....++++++++||+|++++|... ..+.++.. ..+..+++
T Consensus 127 IG~~va~~l~a~G~~V~~~Dp~~~~~-----~~~~~~~~l~ell~~aDiV~lh~Plt~~g~~~T~~li~~--~~l~~mk~ 199 (381)
T PRK00257 127 VGGRLVRVLRGLGWKVLVCDPPRQEA-----EGDGDFVSLERILEECDVISLHTPLTKEGEHPTRHLLDE--AFLASLRP 199 (381)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc-----ccCccccCHHHHHhhCCEEEEeCcCCCCccccccccCCH--HHHhcCCC
Confidence 79999999999999999999864321 122345689999999999999999654 35555543 35677999
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcC
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQ 103 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g 103 (286)
|.++|++|....-....+.+.+.+..
T Consensus 200 gailIN~aRG~vVde~AL~~aL~~g~ 225 (381)
T PRK00257 200 GAWLINASRGAVVDNQALREALLSGE 225 (381)
T ss_pred CeEEEECCCCcccCHHHHHHHHHhCC
Confidence 99999999999988888888886653
|
|
| >PRK13302 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.1e-06 Score=69.86 Aligned_cols=99 Identities=18% Similarity=0.129 Sum_probs=75.3
Q ss_pred ccHHHHHHHHhC--CCcEE-EEcCCchHHHHHHHc-C-CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQ--GHDVI-VYDKNTDASQTLAKE-G-ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~~~-g-~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||..++++|.+. +++|. +|||++++.+.+.+. | ...++++++++.++|+|++|.|++ ...++.. ..+.
T Consensus 17 IG~~~a~~L~~~~~~~el~aV~dr~~~~a~~~a~~~g~~~~~~~~eell~~~D~Vvi~tp~~-~h~e~~~------~aL~ 89 (271)
T PRK13302 17 IGKAIAQALDRGLPGLTLSAVAVRDPQRHADFIWGLRRPPPVVPLDQLATHADIVVEAAPAS-VLRAIVE------PVLA 89 (271)
T ss_pred HHHHHHHHHHhcCCCeEEEEEECCCHHHHHHHHHhcCCCcccCCHHHHhcCCCEEEECCCcH-HHHHHHH------HHHH
Confidence 688899999863 67765 789999998877654 5 356789999999999999999975 4455543 2345
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
.|+.++..|+......+++.+.++++|..+.
T Consensus 90 aGk~Vi~~s~gal~~~~~L~~~A~~~g~~l~ 120 (271)
T PRK13302 90 AGKKAIVLSVGALLRNEDLIDLARQNGGQII 120 (271)
T ss_pred cCCcEEEecchhHHhHHHHHHHHHHcCCEEE
Confidence 6776776676666677888888888887653
|
|
| >cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.4e-05 Score=65.59 Aligned_cols=97 Identities=14% Similarity=0.108 Sum_probs=68.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+|++|.+.|++|+++|+++++.+.+.+. |....++ .++. .+||+++.|-......++.+ +.+ +.+
T Consensus 39 vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~~g~~~v~~-~~l~~~~~Dv~vp~A~~~~I~~~~~-------~~l-~~~ 109 (200)
T cd01075 39 VGYKLAEHLLEEGAKLIVADINEEAVARAAELFGATVVAP-EEIYSVDADVFAPCALGGVINDDTI-------PQL-KAK 109 (200)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEEcc-hhhccccCCEEEecccccccCHHHH-------HHc-CCC
Confidence 79999999999999999999999988888765 7665544 4444 48999996654322222222 223 357
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+|++..+... +..+-.+.+.++|+.|++
T Consensus 110 ~v~~~AN~~~-~~~~~~~~L~~~Gi~~~P 137 (200)
T cd01075 110 AIAGAANNQL-ADPRHGQMLHERGILYAP 137 (200)
T ss_pred EEEECCcCcc-CCHhHHHHHHHCCCEEeC
Confidence 8888765433 324556778899999986
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc |
| >COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=5.3e-06 Score=72.84 Aligned_cols=98 Identities=21% Similarity=0.209 Sum_probs=80.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.+..-|.+|.+||+...+- .....+....+++.+++++||+|++.+|-....+.++.. ..+..+++|.++
T Consensus 153 IG~~va~~l~afgm~v~~~d~~~~~~-~~~~~~~~~~~~Ld~lL~~sDiv~lh~PlT~eT~g~i~~--~~~a~MK~gail 229 (324)
T COG0111 153 IGRAVAKRLKAFGMKVIGYDPYSPRE-RAGVDGVVGVDSLDELLAEADILTLHLPLTPETRGLINA--EELAKMKPGAIL 229 (324)
T ss_pred HHHHHHHHHHhCCCeEEEECCCCchh-hhccccceecccHHHHHhhCCEEEEcCCCCcchhcccCH--HHHhhCCCCeEE
Confidence 79999999999999999999943322 122346777889999999999999999988888888865 456678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhc
Q psy764 82 IDSSTVDPQVPQTLSNLAREK 102 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~ 102 (286)
|+++-...-.-..+.+.+.+.
T Consensus 230 IN~aRG~vVde~aL~~AL~~G 250 (324)
T COG0111 230 INAARGGVVDEDALLAALDSG 250 (324)
T ss_pred EECCCcceecHHHHHHHHHcC
Confidence 999988887778888877664
|
|
| >COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.3e-05 Score=70.45 Aligned_cols=99 Identities=20% Similarity=0.258 Sum_probs=81.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+++..-|.+|..|||++. -+.-...+....+ +.|++++||+|.+.+|...+.+.++.. ..++.+++|.++
T Consensus 157 IG~avA~r~~~Fgm~v~y~~~~~~-~~~~~~~~~~y~~-l~ell~~sDii~l~~Plt~~T~hLin~--~~l~~mk~ga~l 232 (324)
T COG1052 157 IGQAVARRLKGFGMKVLYYDRSPN-PEAEKELGARYVD-LDELLAESDIISLHCPLTPETRHLINA--EELAKMKPGAIL 232 (324)
T ss_pred HHHHHHHHHhcCCCEEEEECCCCC-hHHHhhcCceecc-HHHHHHhCCEEEEeCCCChHHhhhcCH--HHHHhCCCCeEE
Confidence 899999999977789999999975 2222333466666 999999999999999998899988875 456779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|+++-..--..+.+.+.+.+..+
T Consensus 233 VNtaRG~~VDe~ALi~AL~~g~i 255 (324)
T COG1052 233 VNTARGGLVDEQALIDALKSGKI 255 (324)
T ss_pred EECCCccccCHHHHHHHHHhCCc
Confidence 99999888888888888877543
|
|
| >PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.2e-06 Score=73.86 Aligned_cols=97 Identities=20% Similarity=0.224 Sum_probs=80.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.+...|.+|.+||+++.. ...++....+++|++++||+|++++|...+.+.++.. ..+..+++|.++
T Consensus 162 IG~~vA~~~~~fGm~V~~~d~~~~~----~~~~~~~~~~l~ell~~sDiVslh~Plt~~T~~li~~--~~l~~mk~ga~l 235 (409)
T PRK11790 162 IGTQLSVLAESLGMRVYFYDIEDKL----PLGNARQVGSLEELLAQSDVVSLHVPETPSTKNMIGA--EELALMKPGAIL 235 (409)
T ss_pred HHHHHHHHHHHCCCEEEEECCCccc----ccCCceecCCHHHHHhhCCEEEEcCCCChHHhhccCH--HHHhcCCCCeEE
Confidence 7999999999999999999987432 1124455668999999999999999988888888854 356778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|+++....-....+.+.+.+..+
T Consensus 236 IN~aRG~~vde~aL~~aL~~g~i 258 (409)
T PRK11790 236 INASRGTVVDIDALADALKSGHL 258 (409)
T ss_pred EECCCCcccCHHHHHHHHHcCCc
Confidence 99999988888888888876644
|
|
| >PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=7.1e-06 Score=70.23 Aligned_cols=65 Identities=17% Similarity=0.243 Sum_probs=53.8
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.+||..|.++|+.|++|... +.++++.+++||+||+|++.+..++..+ +++|.+
T Consensus 169 ivG~Pla~lL~~~gatVtv~~s~--------------t~~l~~~~~~ADIVI~avg~~~~v~~~~---------ik~Gav 225 (284)
T PRK14179 169 IVGKPMAQLLLDKNATVTLTHSR--------------TRNLAEVARKADILVVAIGRGHFVTKEF---------VKEGAV 225 (284)
T ss_pred cCcHHHHHHHHHCCCEEEEECCC--------------CCCHHHHHhhCCEEEEecCccccCCHHH---------ccCCcE
Confidence 38999999999999999999422 1268899999999999999987766654 578999
Q ss_pred EEEcCCCC
Q psy764 81 VIDSSTVD 88 (286)
Q Consensus 81 vid~st~~ 88 (286)
|||++...
T Consensus 226 VIDvgin~ 233 (284)
T PRK14179 226 VIDVGMNR 233 (284)
T ss_pred EEEeccee
Confidence 99998643
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.5e-05 Score=69.34 Aligned_cols=98 Identities=17% Similarity=0.175 Sum_probs=72.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|..++..|.+.|.+|+++||++++.+.....|.... +++.+.+.++|+||.++|..-..++ ..+.++++.
T Consensus 163 iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~G~~~~~~~~l~~~l~~aDiVI~t~p~~~i~~~-------~l~~~~~g~ 235 (296)
T PRK08306 163 TGMTLARTLKALGANVTVGARKSAHLARITEMGLSPFHLSELAEEVGKIDIIFNTIPALVLTKE-------VLSKMPPEA 235 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCeeecHHHHHHHhCCCCEEEECCChhhhhHH-------HHHcCCCCc
Confidence 6889999999999999999999988777777776644 3567888999999999985322222 344577899
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
+|||+++....+.. +...++|+..+-.
T Consensus 236 vIIDla~~pggtd~---~~a~~~Gv~~~~~ 262 (296)
T PRK08306 236 LIIDLASKPGGTDF---EYAEKRGIKALLA 262 (296)
T ss_pred EEEEEccCCCCcCe---eehhhCCeEEEEE
Confidence 99999876554332 2445667666543
|
|
| >KOG2304|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=3e-05 Score=63.15 Aligned_cols=182 Identities=18% Similarity=0.228 Sum_probs=111.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c------------------CCcccCCHHHHhhcCcEE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E------------------GANMALSLSTLASGAEFI 51 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~------------------g~~~~~s~~e~~~~adiv 51 (286)
+||+.+|+.-+..|++|+++|+++++..+..+ . .++.+.+..+++.++|+|
T Consensus 21 ~MGSGIAQv~a~sg~~V~l~d~~~~aL~~A~~~I~~sl~rvakKk~~~~~~~~~e~v~~~l~ri~~~tnv~~~v~dadli 100 (298)
T KOG2304|consen 21 QMGSGIAQVAATSGLNVWLVDANEDALSRATKAISSSLKRVAKKKKADDPVALEEFVDDTLDRIKTSTNVSDAVSDADLI 100 (298)
T ss_pred ccchhHHHHHHhcCCceEEecCCHHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHcCCHHHhhhhhHHH
Confidence 59999999999999999999999886554432 0 145667778888888888
Q ss_pred EEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHh----cCCceE-eccCCCCHHhhhcCceEEE
Q psy764 52 ISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLARE----KQITFL-DAPVSGGTKAAQEATLTFM 126 (286)
Q Consensus 52 i~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~----~g~~~~-~~pv~g~~~~a~~g~l~~~ 126 (286)
|-++-...+++.=++. .+-...++..++. +.|.+-.. .+++..+.. .|.+|+ +.|++.-.+-....
T Consensus 101 iEAivEn~diK~~lF~--~l~~~ak~~~il~-tNTSSl~l-t~ia~~~~~~srf~GlHFfNPvPvMKLvEVir~~----- 171 (298)
T KOG2304|consen 101 IEAIVENLDIKRKLFK--DLDKIAKSSTILA-TNTSSLSL-TDIASATQRPSRFAGLHFFNPVPVMKLVEVIRTD----- 171 (298)
T ss_pred HHHHHHhHHHHHHHHH--HHHhhcccceEEe-ecccceeH-HHHHhhccChhhhceeeccCCchhHHHhhhhcCC-----
Confidence 7766544444433322 1222233444443 33333322 233333222 256665 34554322211111
Q ss_pred ecCCHhhHHHHHHHHHHhcCCeEecCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCC
Q psy764 127 VGGDKSSLEKAKPILKCMGRNIVHCGD-SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSG 201 (286)
Q Consensus 127 ~gg~~~~~~~~~~ll~~~g~~v~~~g~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~ 201 (286)
-.+++.|.....+-+.+|+..+.+-+ +| - +.|-++ +--+.|++++.++-..+.+++-..+.-+++
T Consensus 172 -~TS~eTf~~l~~f~k~~gKttVackDtpG--F----IVNRlL---iPyl~ea~r~yerGdAskeDIDtaMklGag 237 (298)
T KOG2304|consen 172 -DTSDETFNALVDFGKAVGKTTVACKDTPG--F----IVNRLL---IPYLMEAIRMYERGDASKEDIDTAMKLGAG 237 (298)
T ss_pred -CCCHHHHHHHHHHHHHhCCCceeecCCCc--h----hhhHHH---HHHHHHHHHHHHhcCCcHhhHHHHHhccCC
Confidence 12478888888899999998777665 33 2 234332 335689999999998888888777776543
|
|
| >PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-05 Score=68.34 Aligned_cols=99 Identities=13% Similarity=0.148 Sum_probs=77.7
Q ss_pred ccHHHHHHHH-hCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQ-FQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.+. .-|.+|.+|||.... +.....|... .++.+++++||+|++++|-..+.+.++.. ..+..+++|.+
T Consensus 156 IG~~va~~l~~~fgm~V~~~~~~~~~-~~~~~~~~~~-~~l~ell~~sDvv~lh~plt~~T~~li~~--~~l~~mk~ga~ 231 (323)
T PRK15409 156 IGMALAQRAHFGFNMPILYNARRHHK-EAEERFNARY-CDLDTLLQESDFVCIILPLTDETHHLFGA--EQFAKMKSSAI 231 (323)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCch-hhHHhcCcEe-cCHHHHHHhCCEEEEeCCCChHHhhccCH--HHHhcCCCCeE
Confidence 7899999987 678899999987432 1222345554 48999999999999999988888888854 36677999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~ 104 (286)
+|+++-...-.-..+.+.+.+..+
T Consensus 232 lIN~aRG~vVde~AL~~AL~~g~i 255 (323)
T PRK15409 232 FINAGRGPVVDENALIAALQKGEI 255 (323)
T ss_pred EEECCCccccCHHHHHHHHHcCCe
Confidence 999998887777788888776543
|
|
| >PRK13304 L-aspartate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=98.00 E-value=3.5e-05 Score=66.05 Aligned_cols=98 Identities=22% Similarity=0.297 Sum_probs=72.6
Q ss_pred ccHHHHHHHHhCC--Cc-EEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQG--HD-VIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||..+++.|.+.+ ++ +.+|||++++.+.+.+. +...++++++++.++|+|++|.|. ....++... .+..
T Consensus 12 iG~~ia~~l~~~~~~~elv~v~d~~~~~a~~~a~~~~~~~~~~~~ell~~~DvVvi~a~~-~~~~~~~~~------al~~ 84 (265)
T PRK13304 12 IASLITKAILSGRINAELYAFYDRNLEKAENLASKTGAKACLSIDELVEDVDLVVECASV-NAVEEVVPK------SLEN 84 (265)
T ss_pred HHHHHHHHHHcCCCCeEEEEEECCCHHHHHHHHHhcCCeeECCHHHHhcCCCEEEEcCCh-HHHHHHHHH------HHHc
Confidence 7888999988763 55 56789999998887653 677788999998999999999985 566665532 2445
Q ss_pred CCEEEEcCC---CCchHHHHHHHHHHhcCCce
Q psy764 78 GVIVIDSST---VDPQVPQTLSNLAREKQITF 106 (286)
Q Consensus 78 g~ivid~st---~~p~~~~~~~~~~~~~g~~~ 106 (286)
|+-++.+|+ ..+...+++.+..++.|..+
T Consensus 85 Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l 116 (265)
T PRK13304 85 GKDVIIMSVGALADKELFLKLYKLAKENNCKI 116 (265)
T ss_pred CCCEEEEchHHhcCHHHHHHHHHHHHHcCCEE
Confidence 666666665 35667778888888877543
|
|
| >KOG2305|consensus | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.9e-05 Score=60.79 Aligned_cols=187 Identities=18% Similarity=0.188 Sum_probs=118.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHH-----------HHcC--------------CcccCCHHHHhhcCcEEEEec
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTL-----------AKEG--------------ANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g--------------~~~~~s~~e~~~~adivi~~v 55 (286)
++|+++|--|+..||+|..||+.++.+... .+.| +..+.++.|+++++=.|--|+
T Consensus 13 l~g~~WAmlFAs~GyqVqlYDI~e~Ql~~ALen~~Kel~~Lee~g~lrGnlsa~eqla~is~t~~l~E~vk~Ai~iQEcv 92 (313)
T KOG2305|consen 13 LVGSSWAMLFASSGYQVQLYDILEKQLQTALENVEKELRKLEEHGLLRGNLSADEQLALISGTTSLNELVKGAIHIQECV 92 (313)
T ss_pred cccchHHHHHhccCceEEEeeccHHHHHHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhCCccHHHHHhhhhhHHhhc
Confidence 479999999999999999999998654221 1112 567789999999998888899
Q ss_pred CChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEec---CCHh
Q psy764 56 PASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG---GDKS 132 (286)
Q Consensus 56 ~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g---g~~~ 132 (286)
|.+-.++.-+.. -++.+...++|+..||..-.-+ ...+-+..+.-..+..|+...- . -.++=++- ..++
T Consensus 93 pE~L~lkk~ly~---qlD~i~d~~tIlaSSTSt~mpS-~~s~gL~~k~q~lvaHPvNPPy-f---iPLvElVPaPwTsp~ 164 (313)
T KOG2305|consen 93 PEDLNLKKQLYK---QLDEIADPTTILASSTSTFMPS-KFSAGLINKEQCLVAHPVNPPY-F---IPLVELVPAPWTSPD 164 (313)
T ss_pred hHhhHHHHHHHH---HHHHhcCCceEEeccccccChH-HHhhhhhhhhheeEecCCCCCc-c---cchheeccCCCCChh
Confidence 976665543332 2333334456665554432222 2233333443446667765321 0 01122222 2467
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCC
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGR 202 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~ 202 (286)
.+++.+.+++++|.+++.....-.|.++ |- ...+.++|..++...-+++..++-.+++.+-|-
T Consensus 165 tVdrt~~lM~sigq~pV~l~rei~Gf~l----nr---iq~Ailne~wrLvasGil~v~dvD~VmS~GLG~ 227 (313)
T KOG2305|consen 165 TVDRTRALMRSIGQEPVTLKREILGFAL----NR---IQYAILNETWRLVASGILNVNDVDAVMSAGLGP 227 (313)
T ss_pred HHHHHHHHHHHhCCCCccccccccccee----cc---ccHHHHHHHHHHHHccCcchhhHHHHHhcCCCc
Confidence 8899999999999766554432233333 32 234567999999999889988888888877543
|
|
| >PRK08410 2-hydroxyacid dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.6e-05 Score=67.52 Aligned_cols=97 Identities=22% Similarity=0.197 Sum_probs=77.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.+..-|.+|.+|||+.... ..+.. ..++.+++++||+|++++|-..+.+.++.. ..++.+++|.++
T Consensus 156 IG~~vA~~~~~fgm~V~~~d~~~~~~----~~~~~-~~~l~ell~~sDvv~lh~Plt~~T~~li~~--~~~~~Mk~~a~l 228 (311)
T PRK08410 156 IGKRVAKIAQAFGAKVVYYSTSGKNK----NEEYE-RVSLEELLKTSDIISIHAPLNEKTKNLIAY--KELKLLKDGAIL 228 (311)
T ss_pred HHHHHHHHHhhcCCEEEEECCCcccc----ccCce-eecHHHHhhcCCEEEEeCCCCchhhcccCH--HHHHhCCCCeEE
Confidence 78999999988899999999974321 12333 458999999999999999988888888764 456779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
|+++-...-....+.+.+.+..+.
T Consensus 229 IN~aRG~vVDe~AL~~AL~~g~i~ 252 (311)
T PRK08410 229 INVGRGGIVNEKDLAKALDEKDIY 252 (311)
T ss_pred EECCCccccCHHHHHHHHHcCCeE
Confidence 999988877778888888765443
|
|
| >PRK06487 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.4e-05 Score=65.40 Aligned_cols=94 Identities=15% Similarity=0.178 Sum_probs=75.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.+..-|.+|.+|||.... .... ..++.+++++||+|++++|-..+.+.++.. ..++.+++|.++
T Consensus 159 IG~~vA~~l~~fgm~V~~~~~~~~~------~~~~-~~~l~ell~~sDiv~l~lPlt~~T~~li~~--~~~~~mk~ga~l 229 (317)
T PRK06487 159 LGGAVARLAEAFGMRVLIGQLPGRP------ARPD-RLPLDELLPQVDALTLHCPLTEHTRHLIGA--RELALMKPGALL 229 (317)
T ss_pred HHHHHHHHHhhCCCEEEEECCCCCc------cccc-ccCHHHHHHhCCEEEECCCCChHHhcCcCH--HHHhcCCCCeEE
Confidence 7999999999889999999986421 1112 347999999999999999988888888764 456779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|+++-...-....+.+.+.+..+
T Consensus 230 IN~aRG~vVde~AL~~AL~~g~i 252 (317)
T PRK06487 230 INTARGGLVDEQALADALRSGHL 252 (317)
T ss_pred EECCCccccCHHHHHHHHHcCCe
Confidence 99998877777788888776544
|
|
| >PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional | Back alignment and domain information |
|---|
Probab=97.85 E-value=5.7e-05 Score=67.65 Aligned_cols=94 Identities=19% Similarity=0.197 Sum_probs=71.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhH----HHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD----VLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~----~~~v~~~~~~l~~~l~~ 77 (286)
||+.+|+.|...|.+|.+||+..... ... ....++++++++||+|++++|-... ...++.. ..+..+++
T Consensus 127 IG~~vA~~l~a~G~~V~~~dp~~~~~----~~~-~~~~~L~ell~~sDiI~lh~PLt~~g~~~T~~li~~--~~l~~mk~ 199 (378)
T PRK15438 127 VGRRLQARLEALGIKTLLCDPPRADR----GDE-GDFRSLDELVQEADILTFHTPLFKDGPYKTLHLADE--KLIRSLKP 199 (378)
T ss_pred HHHHHHHHHHHCCCEEEEECCccccc----ccc-cccCCHHHHHhhCCEEEEeCCCCCCcccccccccCH--HHHhcCCC
Confidence 79999999999999999999753211 111 2356899999999999999995442 4445432 35667899
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhc
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREK 102 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~ 102 (286)
|.++|++|-...-....+.+.+.+.
T Consensus 200 gailIN~aRG~vVDe~AL~~aL~~g 224 (378)
T PRK15438 200 GAILINACRGAVVDNTALLTCLNEG 224 (378)
T ss_pred CcEEEECCCchhcCHHHHHHHHHhC
Confidence 9999999988877778888877664
|
|
| >PRK06932 glycerate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.84 E-value=7.4e-05 Score=65.62 Aligned_cols=95 Identities=14% Similarity=0.117 Sum_probs=75.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.+..-|.+|.+|||.... .. .. ...++.+++++||+|++++|-....+.++.. ..++.+++|.++
T Consensus 158 IG~~va~~l~~fg~~V~~~~~~~~~--~~---~~-~~~~l~ell~~sDiv~l~~Plt~~T~~li~~--~~l~~mk~ga~l 229 (314)
T PRK06932 158 LGTEVGRLAQALGMKVLYAEHKGAS--VC---RE-GYTPFEEVLKQADIVTLHCPLTETTQNLINA--ETLALMKPTAFL 229 (314)
T ss_pred HHHHHHHHHhcCCCEEEEECCCccc--cc---cc-ccCCHHHHHHhCCEEEEcCCCChHHhcccCH--HHHHhCCCCeEE
Confidence 7899999998889999999986431 11 11 2458999999999999999988888888764 456779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|+++-...-....+.+.+.+..+
T Consensus 230 IN~aRG~~Vde~AL~~aL~~g~i 252 (314)
T PRK06932 230 INTGRGPLVDEQALLDALENGKI 252 (314)
T ss_pred EECCCccccCHHHHHHHHHcCCc
Confidence 99998887777788888876544
|
|
| >PLN02306 hydroxypyruvate reductase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00014 Score=65.56 Aligned_cols=101 Identities=13% Similarity=0.075 Sum_probs=76.1
Q ss_pred ccHHHHHHHH-hCCCcEEEEcCCchH-HHHH-HHcC------------CcccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQ-FQGHDVIVYDKNTDA-SQTL-AKEG------------ANMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~-~~G~~V~~~dr~~~~-~~~l-~~~g------------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
||..+|+.|. .-|.+|.+||++... .+.. ...| .....++.|++++||+|++++|-....+.++.
T Consensus 176 IG~~vA~~l~~~fGm~V~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~L~ell~~sDiV~lh~Plt~~T~~lin 255 (386)
T PLN02306 176 IGSAYARMMVEGFKMNLIYYDLYQSTRLEKFVTAYGQFLKANGEQPVTWKRASSMEEVLREADVISLHPVLDKTTYHLIN 255 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCCchhhhhhhhhhcccccccccccccccccCCHHHHHhhCCEEEEeCCCChhhhhhcC
Confidence 7899999985 668899999988642 1111 1111 12346899999999999999998788888886
Q ss_pred CCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCC
Q psy764 67 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~ 104 (286)
. ..++.+++|.++|+++-..--....+.+.+.+..+
T Consensus 256 ~--~~l~~MK~ga~lIN~aRG~lVDe~AL~~AL~sg~i 291 (386)
T PLN02306 256 K--ERLALMKKEAVLVNASRGPVIDEVALVEHLKANPM 291 (386)
T ss_pred H--HHHHhCCCCeEEEECCCccccCHHHHHHHHHhCCe
Confidence 5 45677999999999998777777778787766433
|
|
| >PRK00961 H(2)-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0013 Score=55.35 Aligned_cols=111 Identities=17% Similarity=0.206 Sum_probs=83.3
Q ss_pred cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCC---ceEec
Q psy764 33 EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI---TFLDA 109 (286)
Q Consensus 33 ~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~---~~~~~ 109 (286)
.|++++++-.|+++++|++|+-+|-....-.++.. +.++++.|.+|.+++|++|...-++-+.+.++.+ .|.++
T Consensus 127 aGvkVtsDD~EAvk~aei~I~ftPfG~~t~~Iikk---i~~~ipEgAII~~tCTIpt~~ly~~le~l~R~DvgIsS~HPa 203 (342)
T PRK00961 127 LGLKVTTDDREAVADADIVITWLPKGGMQPDIIEK---FADDIKEGAIVTHACTIPTTKFAKIFKDLGRDDLNVTSYHPG 203 (342)
T ss_pred cCceEecCcHHHhcCCCEEEEecCCCCCchHHHHH---HHhhCCCCCEEeccccCCHHHHHHHHHHhCcccCCeeccCCC
Confidence 36888899999999999999999976654555553 7788999999999999999887777666655543 34455
Q ss_pred cCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecC
Q psy764 110 PVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 110 pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
.|-|.+ |. .+..-| +++.++++.++.++.++..|.+-
T Consensus 204 aVPgt~-----Gq-~~i~egyAtEEqI~klveL~~sa~k~ay~~P 242 (342)
T PRK00961 204 AVPEMK-----GQ-VYIAEGYADEEAVEKLYEIGKKARGNAFKMP 242 (342)
T ss_pred CCCCCC-----Cc-eecccccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 555555 43 222222 67889999999999999877654
|
|
| >COG5495 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00091 Score=54.79 Aligned_cols=170 Identities=15% Similarity=0.115 Sum_probs=109.4
Q ss_pred HHhCCCcEE----EEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcC
Q psy764 10 LQFQGHDVI----VYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSS 85 (286)
Q Consensus 10 L~~~G~~V~----~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~s 85 (286)
|.+.-|.++ +..|++++++.|.+.-+-...+.+...+-.+++|+-+|+. .+..+.. ....+||+++++||
T Consensus 26 ~~ra~h~~~~cs~i~srS~~~a~~LaE~~~a~p~d~~~~ael~~~vfv~vpd~-~~s~vaa-----~~~~rpg~iv~HcS 99 (289)
T COG5495 26 LLRADHVVVACSAISSRSRDRAQNLAETYVAPPLDVAKSAELLLLVFVDVPDA-LYSGVAA-----TSLNRPGTIVAHCS 99 (289)
T ss_pred HHHhcchheeehhhhhcCHHHHhhchhccCCCccchhhChhhhceEEecchHH-HHHHHHH-----hcccCCCeEEEEcc
Confidence 445555433 2368888888776653333334444556678899999974 4455543 22356899999999
Q ss_pred CCCchHHHHHHHHHHhcCCceEe-cc---CCCCHHhhh--cCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHH
Q psy764 86 TVDPQVPQTLSNLAREKQITFLD-AP---VSGGTKAAQ--EATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQV 159 (286)
Q Consensus 86 t~~p~~~~~~~~~~~~~g~~~~~-~p---v~g~~~~a~--~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~ 159 (286)
...... +.+.+.+.|..-.+ .| .+|.+...+ .++...+..+|+.-...++.+...||.+.+.+-+ +.-..
T Consensus 100 ga~~~~---il~~~gr~g~~~asiHP~f~Fsgl~edl~rl~d~~~~i~eaD~~g~ai~q~la~emgg~~f~V~~-~~r~l 175 (289)
T COG5495 100 GANGSG---ILAPLGRQGCIPASIHPAFSFSGLDEDLSRLKDTIFGITEADDVGYAIVQSLALEMGGEPFCVRE-EARIL 175 (289)
T ss_pred CCCchh---hhhhhhhcCCcceeecccccccCCHHHHHhCcccEEEeecccccccHHHHHHHHHhCCCceeech-hHHHH
Confidence 865543 33444555543222 23 334555544 4665555578887778899999999998887754 44444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Q psy764 160 AKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189 (286)
Q Consensus 160 ~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~ 189 (286)
+-...|.-.......+.|++.+-+..|+|.
T Consensus 176 YHaaa~~asnf~v~~l~~a~~i~~aag~Dq 205 (289)
T COG5495 176 YHAAAVHASNFIVTVLADALEIYRAAGDDQ 205 (289)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHhcCCC
Confidence 555555555556678899999999999884
|
|
| >KOG0069|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=64.00 Aligned_cols=97 Identities=10% Similarity=0.132 Sum_probs=79.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|..+.-++|++.+.+...+.+.. ..+..+.+.++|+|++|+|.....+.++.. .++..+++|.++
T Consensus 173 IG~~ia~rL~~Fg~~i~y~~r~~~~~~~~~~~~~~-~~d~~~~~~~sD~ivv~~pLt~~T~~liNk--~~~~~mk~g~vl 249 (336)
T KOG0069|consen 173 IGKAIAKRLKPFGCVILYHSRTQLPPEEAYEYYAE-FVDIEELLANSDVIVVNCPLTKETRHLINK--KFIEKMKDGAVL 249 (336)
T ss_pred HHHHHHHhhhhccceeeeecccCCchhhHHHhccc-ccCHHHHHhhCCEEEEecCCCHHHHHHhhH--HHHHhcCCCeEE
Confidence 89999999999884455557877766666666655 568999999999999999999999999875 567789999999
Q ss_pred EEcCCCCchHHHHHHHHHHh
Q psy764 82 IDSSTVDPQVPQTLSNLARE 101 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~ 101 (286)
|+++-...-.-+.+.+.+.+
T Consensus 250 VN~aRG~iide~~l~eaL~s 269 (336)
T KOG0069|consen 250 VNTARGAIIDEEALVEALKS 269 (336)
T ss_pred EeccccccccHHHHHHHHhc
Confidence 99988877777777777654
|
|
| >TIGR01723 hmd_TIGR 5,10-methenyltetrahydromethanopterin hydrogenase | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0015 Score=54.99 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=82.3
Q ss_pred cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCc---eEec
Q psy764 33 EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQIT---FLDA 109 (286)
Q Consensus 33 ~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~---~~~~ 109 (286)
.|++++++-.|+++++|++|+-+|-......++.. +.++++.|.+|.+++|++|...-++-+.+.++.+. |.++
T Consensus 125 aGvkVtsDD~EAv~~aei~I~ftPfG~~q~~Iikk---ii~~lpEgAII~~tCTIpt~~ly~ilE~l~R~DvgVsS~HPa 201 (340)
T TIGR01723 125 LGLKVTTDDREAVEDADIIITWLPKGNKQPDIIKK---FIDDIPEGAIVTHACTIPTTKFAKIFEDLGREDLNVTSYHPG 201 (340)
T ss_pred cCceEecCcHHHhcCCCEEEEEcCCCCCchHHHHH---HHhhCCCCCEEeccccCChHHHHHHHHhhCcccCCeeccCCC
Confidence 36888899999999999999999976644555553 77889999999999999998777776666555433 4444
Q ss_pred cCCCCHHhhhcCceEEEec-CCHhhHHHHHHHHHHhcCCeEecC
Q psy764 110 PVSGGTKAAQEATLTFMVG-GDKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 110 pv~g~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
.|-|.+ +...+.-| .+++.++++.++.++.++..+.+-
T Consensus 202 aVPgt~-----~q~Yi~egyAtEEqI~klveL~~sa~k~ay~~P 240 (340)
T TIGR01723 202 CVPEMK-----GQVYIAEGYASEEAVNKLYELGKKARGKAFKMP 240 (340)
T ss_pred CCCCCC-----CceEeecccCCHHHHHHHHHHHHHhCCCeeecc
Confidence 444443 33233222 268889999999999999877653
|
This model represents a clade of authenticated coenzyme N(5),N(10)-methenyltetrahydromethanopterin reductases. This enzyme does not use F420. This enzyme acts in methanogenesis and as such is restricted to methanogenic archaeal species. This clade is one of two clades in pfam model pfam03201. |
| >PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1 | Back alignment and domain information |
|---|
Probab=97.70 E-value=5.6e-05 Score=58.98 Aligned_cols=81 Identities=17% Similarity=0.231 Sum_probs=61.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCC--------------HHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALS--------------LSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s--------------~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
||+.+|..|.++|++|.++.|++ +.+.+.+.|.+.... ..+..+..|+||+|++. .++++++..
T Consensus 9 iG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-~~~~~~l~~ 86 (151)
T PF02558_consen 9 IGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-YQLEQALQS 86 (151)
T ss_dssp HHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG-GGHHHHHHH
T ss_pred HHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc-cchHHHHHH
Confidence 79999999999999999999998 888887776433222 23456789999999996 577888875
Q ss_pred CccccccCCCCCEEEEcCCC
Q psy764 68 SDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~ 87 (286)
+.+.+.+++.|+-+-+.
T Consensus 87 ---l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 87 ---LKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp ---HCTGEETTEEEEEESSS
T ss_pred ---HhhccCCCcEEEEEeCC
Confidence 77777787666665554
|
1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B .... |
| >smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00011 Score=55.31 Aligned_cols=83 Identities=20% Similarity=0.239 Sum_probs=49.8
Q ss_pred ccHHHHHHHHhC-CCcEEEE-cCCchHHHHHHHcCCcc----cC--CHHHH-hhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ-GHDVIVY-DKNTDASQTLAKEGANM----AL--SLSTL-ASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~-dr~~~~~~~l~~~g~~~----~~--s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
+|..++..|.+. ++++... ++++++.+.+...+... .. +..+. ..++|+||+|+|++...+.+. . +.
T Consensus 11 ~g~~~~~~l~~~~~~~l~av~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvV~~~~~~~~~~~~~~-~---~~ 86 (122)
T smart00859 11 VGQELLRLLAEHPDFEVVALAASARSAGKRVSEAGPHLKGEVVLELEPEDFEELAVDIVFLALPHGVSKEIAP-L---LP 86 (122)
T ss_pred HHHHHHHHHhcCCCceEEEEEechhhcCcCHHHHCcccccccccccccCChhhcCCCEEEEcCCcHHHHHHHH-H---HH
Confidence 456677777774 7776665 66554444443332111 11 11112 258999999999875544433 1 44
Q ss_pred ccCCCCCEEEEcCCCC
Q psy764 73 KHAKPGVIVIDSSTVD 88 (286)
Q Consensus 73 ~~l~~g~ivid~st~~ 88 (286)
..+.+|++|||+|+..
T Consensus 87 ~~~~~g~~viD~s~~~ 102 (122)
T smart00859 87 KAAEAGVKVIDLSSAF 102 (122)
T ss_pred hhhcCCCEEEECCccc
Confidence 5568999999999864
|
The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase. |
| >TIGR02371 ala_DH_arch alanine dehydrogenase, Archaeoglobus fulgidus type | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00014 Score=64.26 Aligned_cols=71 Identities=14% Similarity=0.230 Sum_probs=54.2
Q ss_pred hCCCcEEEEcCCchHHHHHHHc----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcC
Q psy764 12 FQGHDVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSS 85 (286)
Q Consensus 12 ~~G~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~s 85 (286)
....+|.+|||++++.+.+.+. | +..++++++++++||+|++|+|+. +.++. ...+++|..|...+
T Consensus 151 ~~~~~v~V~~r~~~~~~~~~~~~~~~g~~v~~~~~~~eav~~aDiVitaT~s~---~P~~~-----~~~l~~g~~v~~vG 222 (325)
T TIGR02371 151 FDLEEVSVYCRTPSTREKFALRASDYEVPVRAATDPREAVEGCDILVTTTPSR---KPVVK-----ADWVSEGTHINAIG 222 (325)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhhCCcEEEeCCHHHHhccCCEEEEecCCC---CcEec-----HHHcCCCCEEEecC
Confidence 3456899999999998877542 5 456789999999999999999964 23332 23468999988888
Q ss_pred CCCch
Q psy764 86 TVDPQ 90 (286)
Q Consensus 86 t~~p~ 90 (286)
+..|.
T Consensus 223 s~~p~ 227 (325)
T TIGR02371 223 ADAPG 227 (325)
T ss_pred CCCcc
Confidence 77664
|
This enzyme, a homolog of bacterial ornithine cyclodeaminases and marsupial mu-crystallins, is a homodimeric, NAD-dependent alanine dehydrogenase found in Archaeoglobus fulgidus and several other Archaea. For a number of close homologs, scoring between trusted and noise cutoffs, it is not clear at present what is the enzymatic activity. |
| >PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00035 Score=64.96 Aligned_cols=92 Identities=18% Similarity=0.279 Sum_probs=65.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
+|.+++..|.+.|++|.++||++++.+.+.+. +.... .+..+ +.++|+||.|+|....+.. .+.
T Consensus 343 iG~aia~~L~~~G~~V~i~~R~~~~~~~la~~~~~~~~~~~~~~~-l~~~DiVInatP~g~~~~~----------~l~-- 409 (477)
T PRK09310 343 AAKAIATTLARAGAELLIFNRTKAHAEALASRCQGKAFPLESLPE-LHRIDIIINCLPPSVTIPK----------AFP-- 409 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccceechhHhcc-cCCCCEEEEcCCCCCcchh----------HHh--
Confidence 68999999999999999999999988877653 22221 22222 4689999999997643211 111
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+++|+++..+.+. +.+.+++.|+..++
T Consensus 410 ~~v~D~~Y~P~~T~--ll~~A~~~G~~~~~ 437 (477)
T PRK09310 410 PCVVDINTLPKHSP--YTQYARSQGSSIIY 437 (477)
T ss_pred hhEEeccCCCCCCH--HHHHHHHCcCEEEC
Confidence 48999998877665 56677788887765
|
|
| >PRK11861 bifunctional prephenate dehydrogenase/3-phosphoshikimate 1-carboxyvinyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.0014 Score=63.65 Aligned_cols=115 Identities=10% Similarity=0.131 Sum_probs=86.3
Q ss_pred EEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhh--------hcC
Q psy764 51 IISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAA--------QEA 121 (286)
Q Consensus 51 vi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a--------~~g 121 (286)
||+|+| ...+.+++.. +.+.++++.+|.|.++++....+.+.+.+......|+. +|+.|++..- -.+
T Consensus 1 vila~P-v~~~~~~~~~---~~~~~~~~~~vtDv~SvK~~i~~~~~~~l~~~~~~fvg~HPMaG~e~~G~~~a~~~Lf~~ 76 (673)
T PRK11861 1 VLLAAP-VAQTGPLLAR---IAPFLDASTIVTDAGSTKSDVVAAARAALGARIGQFVPGHPIAGRESSGVDAALADLYVG 76 (673)
T ss_pred CEEEcC-HHHHHHHHHH---HhhhCCCCcEEEecCcccHHHHHHHHHhccccCCeEEecCCcCcCcchhhhhhChhHhCC
Confidence 689999 5678888875 88888999999999999988777776665443346775 6888865322 256
Q ss_pred ceEEEecC---CHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHH
Q psy764 122 TLTFMVGG---DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLG 169 (286)
Q Consensus 122 ~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~ 169 (286)
...+++-. +.+.++.++++++.+|.+++.+.+-.+-..+-+++.+...
T Consensus 77 ~~~il~p~~~~~~~~~~~~~~l~~~~Ga~~~~~~~~~HD~~~A~iShlpH~ 127 (673)
T PRK11861 77 RNVVLCALPENAPDALARVEAMWRAARADVRAMSAEQHDRVFAAVSHLPHV 127 (673)
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHHHHHHhhHHHH
Confidence 65677743 4678899999999999999999876777777666655443
|
|
| >PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3 | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00031 Score=54.99 Aligned_cols=83 Identities=14% Similarity=0.179 Sum_probs=58.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+|+.|...|-+|++++++|-++-+....|.++. +..+++..+|++|++......+.. ..+..+++|.++
T Consensus 34 vG~g~A~~lr~~Ga~V~V~e~DPi~alqA~~dGf~v~-~~~~a~~~adi~vtaTG~~~vi~~------e~~~~mkdgail 106 (162)
T PF00670_consen 34 VGKGIARALRGLGARVTVTEIDPIRALQAAMDGFEVM-TLEEALRDADIFVTATGNKDVITG------EHFRQMKDGAIL 106 (162)
T ss_dssp HHHHHHHHHHHTT-EEEEE-SSHHHHHHHHHTT-EEE--HHHHTTT-SEEEE-SSSSSSB-H------HHHHHS-TTEEE
T ss_pred ccHHHHHHHhhCCCEEEEEECChHHHHHhhhcCcEec-CHHHHHhhCCEEEECCCCccccCH------HHHHHhcCCeEE
Confidence 6899999999999999999999988777777788775 689999999999998876432211 123447889999
Q ss_pred EEcCCCCchH
Q psy764 82 IDSSTVDPQV 91 (286)
Q Consensus 82 id~st~~p~~ 91 (286)
.+.+...-+.
T Consensus 107 ~n~Gh~d~Ei 116 (162)
T PF00670_consen 107 ANAGHFDVEI 116 (162)
T ss_dssp EESSSSTTSB
T ss_pred eccCcCceeE
Confidence 9887765553
|
3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C .... |
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.001 Score=60.12 Aligned_cols=91 Identities=18% Similarity=0.148 Sum_probs=67.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+|..+...|.+|+++|+++.+.......|..+. +..++++.+|+||.+..+...+..- ....+++|.++
T Consensus 206 IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~G~~v~-~leeal~~aDVVItaTG~~~vI~~~------~~~~mK~Gail 278 (406)
T TIGR00936 206 CGKGIAMRARGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKIGDIFITATGNKDVIRGE------HFENMKDGAIV 278 (406)
T ss_pred HHHHHHHHHhhCcCEEEEEeCChhhHHHHHhcCCEeC-CHHHHHhcCCEEEECCCCHHHHHHH------HHhcCCCCcEE
Confidence 6889999999999999999999988766666677554 5688899999999998875544431 23457889999
Q ss_pred EEcCCCCc-hHHHHHHHHH
Q psy764 82 IDSSTVDP-QVPQTLSNLA 99 (286)
Q Consensus 82 id~st~~p-~~~~~~~~~~ 99 (286)
++.+-... -....+.+..
T Consensus 279 iN~G~~~~eId~~aL~~~~ 297 (406)
T TIGR00936 279 ANIGHFDVEIDVKALEELA 297 (406)
T ss_pred EEECCCCceeCHHHHHHHH
Confidence 99887654 3444444433
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.00091 Score=59.90 Aligned_cols=107 Identities=19% Similarity=0.227 Sum_probs=78.9
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHcC---C-------cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKEG---A-------NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g---~-------~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||++.|..|+++| ++|++-||++++++++.... + .-.+.+.+++++.|+||.|.|..... .++.
T Consensus 12 Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VIn~~p~~~~~-~i~k---- 86 (389)
T COG1748 12 VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVINAAPPFVDL-TILK---- 86 (389)
T ss_pred hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEEEeCCchhhH-HHHH----
Confidence 7999999999999 89999999999999886652 1 22234667888999999999965443 3332
Q ss_pred ccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHH
Q psy764 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTK 116 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~ 116 (286)
..++.|.-++|+|-..+.. .++.+...+.|+..+ ++.+..|..
T Consensus 87 --a~i~~gv~yvDts~~~~~~-~~~~~~a~~Agit~v~~~G~dPGi~ 130 (389)
T COG1748 87 --ACIKTGVDYVDTSYYEEPP-WKLDEEAKKAGITAVLGCGFDPGIT 130 (389)
T ss_pred --HHHHhCCCEEEcccCCchh-hhhhHHHHHcCeEEEcccCcCcchH
Confidence 3456788899988777775 777778888776554 444444443
|
|
| >cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00027 Score=62.14 Aligned_cols=81 Identities=21% Similarity=0.303 Sum_probs=57.3
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-CCccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC-C
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-GANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-K 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l-~ 76 (286)
||..+++.|...| ++|+++||++++.+.+.+. |.... ++..+.+.++|+||.|++.+.. ..++.. ..... .
T Consensus 189 iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVi~at~~~~~-~~~~~~---~~~~~~~ 264 (311)
T cd05213 189 MGELAAKHLAAKGVAEITIANRTYERAEELAKELGGNAVPLDELLELLNEADVVISATGAPHY-AKIVER---AMKKRSG 264 (311)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCCeEEeHHHHHHHHhcCCEEEECCCCCch-HHHHHH---HHhhCCC
Confidence 7888999998866 6899999999988777654 54332 3466778899999999998754 333221 11111 2
Q ss_pred CCCEEEEcCC
Q psy764 77 PGVIVIDSST 86 (286)
Q Consensus 77 ~g~ivid~st 86 (286)
++.++||.+-
T Consensus 265 ~~~~viDlav 274 (311)
T cd05213 265 KPRLIVDLAV 274 (311)
T ss_pred CCeEEEEeCC
Confidence 5789999984
|
Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, |
| >COG2423 Predicted ornithine cyclodeaminase, mu-crystallin homolog [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00031 Score=61.69 Aligned_cols=86 Identities=19% Similarity=0.353 Sum_probs=62.0
Q ss_pred CcEEEEcCCchHHHHHHH----cC---CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 15 HDVIVYDKNTDASQTLAK----EG---ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~----~g---~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
-+|.+|+|+++..+++.. .+ +..++|.++++++||+|++|.|+.+ .++. .+.+++|..|.-+++-
T Consensus 156 ~~I~i~~r~~~~~e~~a~~l~~~~~~~v~a~~s~~~av~~aDiIvt~T~s~~---Pil~-----~~~l~~G~hI~aiGad 227 (330)
T COG2423 156 REIRVYSRDPEAAEAFAARLRKRGGEAVGAADSAEEAVEGADIVVTATPSTE---PVLK-----AEWLKPGTHINAIGAD 227 (330)
T ss_pred cEEEEEcCCHHHHHHHHHHHHhhcCccceeccCHHHHhhcCCEEEEecCCCC---Ceec-----HhhcCCCcEEEecCCC
Confidence 479999999999888763 23 4788999999999999999999754 5553 3457889888888776
Q ss_pred CchHHHHHHHH-HHhcCCceEec
Q psy764 88 DPQVPQTLSNL-AREKQITFLDA 109 (286)
Q Consensus 88 ~p~~~~~~~~~-~~~~g~~~~~~ 109 (286)
.|. .+++... +...+..|+|.
T Consensus 228 ~p~-k~Eld~e~l~ra~~vvvD~ 249 (330)
T COG2423 228 APG-KRELDPEVLARADRVVVDS 249 (330)
T ss_pred Ccc-cccCCHHHHHhcCeEEEcC
Confidence 555 4444444 33333556653
|
|
| >PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00025 Score=51.95 Aligned_cols=81 Identities=20% Similarity=0.235 Sum_probs=56.9
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHH---HcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLA---KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~---~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
..+++.|.+.|.+|.+||..-....... ..+++.++++.++++++|+||++++.+ ..+.+-. +++...+.++.+
T Consensus 20 ~~l~~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vvl~t~h~-~f~~l~~--~~~~~~~~~~~~ 96 (106)
T PF03720_consen 20 LELIEELKERGAEVSVYDPYVDEEEIKELGKLEGVEVCDDLEEALKGADAVVLATDHD-EFRELDW--EEIAKLMRKPPV 96 (106)
T ss_dssp HHHHHHHHHTT-EEEEE-TTSHHHHHHHHCHHHCEEEESSHHHHHTTESEEEESS--G-GGGCCGH--HHHHHHSCSSEE
T ss_pred HHHHHHHHHCCCEEEEECCccChHHHHhhCCccceEEecCHHHHhcCCCEEEEEecCH-HHhccCH--HHHHHhcCCCCE
Confidence 4678899999999999998866544433 257888999999999999999999975 4444211 124445668899
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
|+|+-.+
T Consensus 97 iiD~~~~ 103 (106)
T PF03720_consen 97 IIDGRNI 103 (106)
T ss_dssp EEESSST
T ss_pred EEECccc
Confidence 9998554
|
The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B .... |
| >PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0025 Score=47.38 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=70.1
Q ss_pred cHHHHHHHHhC--CCcE-EEEcCCchHHHHHHH-cCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 3 STLKLFFLQFQ--GHDV-IVYDKNTDASQTLAK-EGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 3 G~~lA~~L~~~--G~~V-~~~dr~~~~~~~l~~-~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
|......+.+. +.+| .++|+++++.+.+.+ .|...++|..++++ +.|+|++|+|+....+.+.. . +.
T Consensus 12 g~~~~~~~~~~~~~~~v~~v~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~I~tp~~~h~~~~~~----~---l~ 84 (120)
T PF01408_consen 12 GRRHLRALLRSSPDFEVVAVCDPDPERAEAFAEKYGIPVYTDLEELLADEDVDAVIIATPPSSHAEIAKK----A---LE 84 (120)
T ss_dssp HHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTSEEESSHHHHHHHTTESEEEEESSGGGHHHHHHH----H---HH
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCCHHHHHHHHHHhcccchhHHHHHHHhhcCCEEEEecCCcchHHHHHH----H---HH
Confidence 45555566665 3454 478999999888754 48899999999998 79999999998766555443 2 33
Q ss_pred CC-CEEEEc-CCCCchHHHHHHHHHHhcCCce
Q psy764 77 PG-VIVIDS-STVDPQVPQTLSNLAREKQITF 106 (286)
Q Consensus 77 ~g-~ivid~-st~~p~~~~~~~~~~~~~g~~~ 106 (286)
.| .++++. -+.++.+.+++.+..+++|..+
T Consensus 85 ~g~~v~~EKP~~~~~~~~~~l~~~a~~~~~~~ 116 (120)
T PF01408_consen 85 AGKHVLVEKPLALTLEEAEELVEAAKEKGVKV 116 (120)
T ss_dssp TTSEEEEESSSSSSHHHHHHHHHHHHHHTSCE
T ss_pred cCCEEEEEcCCcCCHHHHHHHHHHHHHhCCEE
Confidence 34 456664 2457888899999888888654
|
GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A .... |
| >PF00393 6PGD: 6-phosphogluconate dehydrogenase, C-terminal domain; InterPro: IPR006114 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00058 Score=58.55 Aligned_cols=96 Identities=20% Similarity=0.201 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---ccCCCcccccccCCCCCccccCCCCCCCCCCccch
Q psy764 157 GQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVIN---TSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKIS 232 (286)
Q Consensus 157 a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 232 (286)
|+.+||++|.+.++++++++|++.+.++ .|++.+++.+++. .+...||..+..... +. ..+.+..+-++
T Consensus 1 GHyvKMVHNGIEYg~MQ~iaE~y~ll~~~~~~~~~ei~~vf~~Wn~g~l~S~Lieit~~i---l~----~~d~~g~~lld 73 (291)
T PF00393_consen 1 GHYVKMVHNGIEYGDMQLIAEGYDLLRRGLGLSNEEIADVFEEWNKGELRSYLIEITADI---LR----KKDETGGPLLD 73 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT--HHHHHHHHHHHHTTTT-BHHHHHHHHH---HT-----B-TTSSBGGG
T ss_pred CCceeeeeccHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHCcCchhhHHHHHHHHH---Hh----hccCccCcchh
Confidence 6899999999999999999999999995 7899988888877 355667765543221 10 11111111111
Q ss_pred hH------HHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 233 LL------AKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 233 ~~------~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
.. ...-+...+.|-++|+|.|++..+.
T Consensus 74 ~I~d~a~~kGtG~Wt~~~a~~~gvp~p~I~~a~ 106 (291)
T PF00393_consen 74 KILDKAGQKGTGKWTVQEALELGVPAPTIAAAV 106 (291)
T ss_dssp GB-S----BSHHHHHHHHHHHHT---HHHHHHH
T ss_pred hhCCccCCCCccchHHHHHHHhCCCccHHHHHH
Confidence 11 1123457788889999999776654
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequences are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This entry represents the C-terminal all-alpha domain of 6-phosphogluconate dehydrogenase. The domain contains two structural repeats of 5 helices each. The NAD-binding domain is described in IPR006115 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0050661 NADP binding, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 2ZYD_A 2ZYA_A 3FWN_A 2JKV_E 2ZYG_B 4E21_A 1PGJ_A 1PGP_A 1PGN_A 2PGD_A .... |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=60.09 Aligned_cols=82 Identities=15% Similarity=0.169 Sum_probs=64.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|..|...|.+|+++|+++.+.......|..+ .+..++++.+|+||.|..+...+..- ....+++|.++
T Consensus 223 IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~G~~v-~~l~eal~~aDVVI~aTG~~~vI~~~------~~~~mK~Gail 295 (425)
T PRK05476 223 VGKGCAQRLRGLGARVIVTEVDPICALQAAMDGFRV-MTMEEAAELGDIFVTATGNKDVITAE------HMEAMKDGAIL 295 (425)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCchhhHHHHhcCCEe-cCHHHHHhCCCEEEECCCCHHHHHHH------HHhcCCCCCEE
Confidence 789999999999999999999998876666667664 46889999999999998765444321 33457889999
Q ss_pred EEcCCCCch
Q psy764 82 IDSSTVDPQ 90 (286)
Q Consensus 82 id~st~~p~ 90 (286)
++.+....+
T Consensus 296 iNvG~~d~E 304 (425)
T PRK05476 296 ANIGHFDNE 304 (425)
T ss_pred EEcCCCCCc
Confidence 998776543
|
|
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00073 Score=61.96 Aligned_cols=80 Identities=16% Similarity=0.150 Sum_probs=61.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|..|...|.+|+++++++.+.......|+.. .++.++++.+|+|++|..+.. ++.. ..++.+++|.++
T Consensus 265 IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~G~~~-~~leell~~ADIVI~atGt~~----iI~~--e~~~~MKpGAiL 337 (476)
T PTZ00075 265 VGKGCAQALRGFGARVVVTEIDPICALQAAMEGYQV-VTLEDVVETADIFVTATGNKD----IITL--EHMRRMKNNAIV 337 (476)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhHHHHHhcCcee-ccHHHHHhcCCEEEECCCccc----ccCH--HHHhccCCCcEE
Confidence 799999999999999999999988765555567654 468899999999999976533 3221 134557899999
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
++++-..
T Consensus 338 INvGr~d 344 (476)
T PTZ00075 338 GNIGHFD 344 (476)
T ss_pred EEcCCCc
Confidence 9987774
|
|
| >PRK06407 ornithine cyclodeaminase; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.00046 Score=60.29 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=54.2
Q ss_pred CcEEEEcCCchHHHHHHHc-----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 15 HDVIVYDKNTDASQTLAKE-----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.+|.+|||++++.+.+.+. | +.+++++++++++||||++|.+.. +.++. .+.++||..|.-..+.
T Consensus 143 ~~v~v~~r~~~~a~~f~~~~~~~~~~~v~~~~~~~eav~~aDIV~taT~s~---~P~~~-----~~~l~pg~hV~aiGs~ 214 (301)
T PRK06407 143 KRIRVYSRNFDHARAFAERFSKEFGVDIRPVDNAEAALRDADTITSITNSD---TPIFN-----RKYLGDEYHVNLAGSN 214 (301)
T ss_pred CEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCC---CcEec-----HHHcCCCceEEecCCC
Confidence 3799999999998877543 4 456789999999999999999964 24442 2346788888877777
Q ss_pred CchHHHHHHH
Q psy764 88 DPQVPQTLSN 97 (286)
Q Consensus 88 ~p~~~~~~~~ 97 (286)
.|.. +++..
T Consensus 215 ~p~~-~El~~ 223 (301)
T PRK06407 215 YPNR-REAEH 223 (301)
T ss_pred CCCc-ccCCH
Confidence 6653 44433
|
|
| >PRK06823 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0009 Score=58.78 Aligned_cols=69 Identities=17% Similarity=0.311 Sum_probs=52.5
Q ss_pred CcEEEEcCCchHHHHHHHc----CC--cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 15 HDVIVYDKNTDASQTLAKE----GA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~----g~--~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
.+|.+|||++++.+.+.+. +. .+++++++++++||||++|.+.. ..++. .+.+++|..|+-.++..
T Consensus 154 ~~v~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIV~taT~s~---~P~~~-----~~~l~~G~hi~~iGs~~ 225 (315)
T PRK06823 154 RQLWVWGRSETALEEYRQYAQALGFAVNTTLDAAEVAHAANLIVTTTPSR---EPLLQ-----AEDIQPGTHITAVGADS 225 (315)
T ss_pred CEEEEECCCHHHHHHHHHHHHhcCCcEEEECCHHHHhcCCCEEEEecCCC---CceeC-----HHHcCCCcEEEecCCCC
Confidence 4899999999998876532 43 44789999999999999999864 34443 23477999998888777
Q ss_pred chH
Q psy764 89 PQV 91 (286)
Q Consensus 89 p~~ 91 (286)
|..
T Consensus 226 p~~ 228 (315)
T PRK06823 226 PGK 228 (315)
T ss_pred ccc
Confidence 753
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.0022 Score=58.78 Aligned_cols=79 Identities=18% Similarity=0.223 Sum_probs=62.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHH-HHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDV-LDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~-~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.+...|.+|+++++++.+.......|.... +..++++.+|+||++..+...+ .+ .++.+++|.+
T Consensus 265 IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G~~vv-~leEal~~ADVVI~tTGt~~vI~~e-------~L~~MK~GAi 336 (477)
T PLN02494 265 VGKGCAAAMKAAGARVIVTEIDPICALQALMEGYQVL-TLEDVVSEADIFVTTTGNKDIIMVD-------HMRKMKNNAI 336 (477)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcCCeec-cHHHHHhhCCEEEECCCCccchHHH-------HHhcCCCCCE
Confidence 7999999999999999999999987666666677654 6889999999999987764332 33 3345889999
Q ss_pred EEEcCCCC
Q psy764 81 VIDSSTVD 88 (286)
Q Consensus 81 vid~st~~ 88 (286)
+++++...
T Consensus 337 LiNvGr~~ 344 (477)
T PLN02494 337 VCNIGHFD 344 (477)
T ss_pred EEEcCCCC
Confidence 99998743
|
|
| >PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.00051 Score=52.62 Aligned_cols=59 Identities=19% Similarity=0.257 Sum_probs=46.8
Q ss_pred ccHHHHHHHHhCCCc-EEEEcCCchHHHHHHHc-C-----CcccCCHHHHhhcCcEEEEecCChhH
Q psy764 2 ISTLKLFFLQFQGHD-VIVYDKNTDASQTLAKE-G-----ANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~-g-----~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
+|++.+..|.+.|.+ |+++||+.++++.+.+. + ....++..+...++|+||.|.|.+..
T Consensus 23 ~ar~v~~~L~~~g~~~i~i~nRt~~ra~~l~~~~~~~~~~~~~~~~~~~~~~~~DivI~aT~~~~~ 88 (135)
T PF01488_consen 23 AARAVAAALAALGAKEITIVNRTPERAEALAEEFGGVNIEAIPLEDLEEALQEADIVINATPSGMP 88 (135)
T ss_dssp HHHHHHHHHHHTTSSEEEEEESSHHHHHHHHHHHTGCSEEEEEGGGHCHHHHTESEEEE-SSTTST
T ss_pred HHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHcCccccceeeHHHHHHHHhhCCeEEEecCCCCc
Confidence 578899999999986 99999999999988764 1 22345667778999999999997643
|
Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C .... |
| >PRK07340 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0019 Score=56.49 Aligned_cols=97 Identities=12% Similarity=0.241 Sum_probs=65.0
Q ss_pred ccHHHHHHHHh-CC-CcEEEEcCCchHHHHHHHc----CCcc-cCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQF-QG-HDVIVYDKNTDASQTLAKE----GANM-ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~----g~~~-~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
+|...+..+.. .+ .+|.+|||++++.+.+.+. +... +++.+++++++|+||+|.|.+. .++.. .
T Consensus 136 qa~~~~~al~~~~~~~~v~v~~r~~~~a~~~a~~~~~~~~~~~~~~~~~av~~aDiVitaT~s~~---Pl~~~------~ 206 (304)
T PRK07340 136 QARAHLEAFAAGLPVRRVWVRGRTAASAAAFCAHARALGPTAEPLDGEAIPEAVDLVVTATTSRT---PVYPE------A 206 (304)
T ss_pred HHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCCeeEECCHHHHhhcCCEEEEccCCCC---ceeCc------c
Confidence 45566666654 45 4799999999998887653 3333 4788999999999999999763 44431 3
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+++|+.|...++-.|.. +++...+-.+.-.|+|
T Consensus 207 ~~~g~hi~~iGs~~p~~-~El~~~~~~~a~v~vD 239 (304)
T PRK07340 207 ARAGRLVVAVGAFTPDM-AELAPRTVRGSRLYVD 239 (304)
T ss_pred CCCCCEEEecCCCCCCc-ccCCHHHHhhCeEEEc
Confidence 67999988888877753 3433333222223555
|
|
| >cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase | Back alignment and domain information |
|---|
Probab=97.08 E-value=0.0013 Score=53.62 Aligned_cols=82 Identities=18% Similarity=0.323 Sum_probs=55.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----CCc--c--c---CCHHHHhhcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----GAN--M--A---LSLSTLASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~--~--~---~s~~e~~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
+|..+++.|++.|++|++++|+.++.+.+.+. +.. . . ++..++++++|+||.+.|.+......
T Consensus 40 iG~~~a~~l~~~g~~V~l~~R~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~diVi~at~~g~~~~~~----- 114 (194)
T cd01078 40 VGQRAAVLLAREGARVVLVGRDLERAQKAADSLRARFGEGVGAVETSDDAARAAAIKGADVVFAAGAAGVELLEK----- 114 (194)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhhcCCcEEEeeCCCHHHHHHHHhcCCEEEECCCCCceechh-----
Confidence 57889999999999999999999988776542 211 1 1 22346788999999999976531111
Q ss_pred cccccCCCCCEEEEcCCCCc
Q psy764 70 GILKHAKPGVIVIDSSTVDP 89 (286)
Q Consensus 70 ~l~~~l~~g~ivid~st~~p 89 (286)
.....+++.+++|+.-..+
T Consensus 115 -~~~~~~~~~vv~D~~~~~~ 133 (194)
T cd01078 115 -LAWAPKPLAVAADVNAVPP 133 (194)
T ss_pred -hhcccCceeEEEEccCCCC
Confidence 1112345789999865444
|
Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo |
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0025 Score=57.84 Aligned_cols=79 Identities=16% Similarity=0.178 Sum_probs=63.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||...+..+...|.+|+++|+++.+.+.....|+... +..++++.+|+||.|..++..+..- ....+++|.++
T Consensus 213 IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G~~~~-~~~e~v~~aDVVI~atG~~~~i~~~------~l~~mk~Ggil 285 (413)
T cd00401 213 VGKGCAQSLRGQGARVIVTEVDPICALQAAMEGYEVM-TMEEAVKEGDIFVTTTGNKDIITGE------HFEQMKDGAIV 285 (413)
T ss_pred HHHHHHHHHHHCCCEEEEEECChhhHHHHHhcCCEEc-cHHHHHcCCCEEEECCCCHHHHHHH------HHhcCCCCcEE
Confidence 6889999999999999999999999888888887554 4678889999999998876544432 23457889999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
++.+..
T Consensus 286 vnvG~~ 291 (413)
T cd00401 286 CNIGHF 291 (413)
T ss_pred EEeCCC
Confidence 988753
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >PRK00258 aroE shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0017 Score=56.20 Aligned_cols=103 Identities=20% Similarity=0.259 Sum_probs=67.3
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-C----CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-G----ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g----~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+|.+++..|.+.| .+|+++||+.++.+.+.+. + +....+..+.+.++|+||-|+|.+-. .-.....-....+
T Consensus 134 ~a~ai~~aL~~~g~~~V~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivInaTp~g~~--~~~~~~~~~~~~l 211 (278)
T PRK00258 134 AARAVILPLLDLGVAEITIVNRTVERAEELAKLFGALGKAELDLELQEELADFDLIINATSAGMS--GELPLPPLPLSLL 211 (278)
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhccceeecccchhccccCCEEEECCcCCCC--CCCCCCCCCHHHc
Confidence 5788999999999 6899999999998888654 2 11111334667889999999996432 1000000011346
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+++.+|+|+.- .|..+ .+.+..++.|+.+++
T Consensus 212 ~~~~~v~DivY-~P~~T-~ll~~A~~~G~~~~~ 242 (278)
T PRK00258 212 RPGTIVYDMIY-GPLPT-PFLAWAKAQGARTID 242 (278)
T ss_pred CCCCEEEEeec-CCCCC-HHHHHHHHCcCeecC
Confidence 77899999976 44443 344556777876665
|
|
| >PRK08618 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0024 Score=56.52 Aligned_cols=81 Identities=17% Similarity=0.234 Sum_probs=57.9
Q ss_pred cHHHHHHHHh-CC-CcEEEEcCCchHHHHHHHc-----CC--cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 3 STLKLFFLQF-QG-HDVIVYDKNTDASQTLAKE-----GA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 3 G~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~-----g~--~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
|...+..+.. .+ .+|.+|||++++.+++.+. ++ ..+++.+++++++|+|++|.|... .++ - .
T Consensus 139 a~~~~~al~~~~~~~~v~v~~r~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~aDiVi~aT~s~~---p~i-----~-~ 209 (325)
T PRK08618 139 AKGQLEAVLAVRDIERVRVYSRTFEKAYAFAQEIQSKFNTEIYVVNSADEAIEEADIIVTVTNAKT---PVF-----S-E 209 (325)
T ss_pred HHHHHHHHHhcCCccEEEEECCCHHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEccCCCC---cch-----H-H
Confidence 3445555543 34 3799999999998887642 43 356789999999999999999753 333 1 3
Q ss_pred cCCCCCEEEEcCCCCchHH
Q psy764 74 HAKPGVIVIDSSTVDPQVP 92 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~ 92 (286)
.+++|+.|+...+..|...
T Consensus 210 ~l~~G~hV~~iGs~~p~~~ 228 (325)
T PRK08618 210 KLKKGVHINAVGSFMPDMQ 228 (325)
T ss_pred hcCCCcEEEecCCCCcccc
Confidence 4688999998887777543
|
|
| >TIGR03855 NAD_NadX aspartate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0049 Score=51.56 Aligned_cols=85 Identities=20% Similarity=0.291 Sum_probs=61.8
Q ss_pred EEEEcCCchHHHHHHHc-CCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC---CchH
Q psy764 17 VIVYDKNTDASQTLAKE-GANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV---DPQV 91 (286)
Q Consensus 17 V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~---~p~~ 91 (286)
+.+||+++++.+.+.+. |+..++++++++ .+.|+|++|.|+. ...++.. +.+..|+-++-.|.. ....
T Consensus 5 vaV~D~~~e~a~~~a~~~g~~~~~d~~eLl~~~vDaVviatp~~-~H~e~a~------~aL~aGkhVl~~s~gAlad~e~ 77 (229)
T TIGR03855 5 AAVYDRNPKDAKELAERCGAKIVSDFDEFLPEDVDIVVEAASQE-AVKEYAE------KILKNGKDLLIMSVGALADREL 77 (229)
T ss_pred EEEECCCHHHHHHHHHHhCCceECCHHHHhcCCCCEEEECCChH-HHHHHHH------HHHHCCCCEEEECCcccCCHHH
Confidence 56899999999888654 788889999986 5799999999975 4444432 235566544445554 4567
Q ss_pred HHHHHHHHHhcCCceEe
Q psy764 92 PQTLSNLAREKQITFLD 108 (286)
Q Consensus 92 ~~~~~~~~~~~g~~~~~ 108 (286)
.+++.+..++.|..+.-
T Consensus 78 ~~~l~~aA~~~g~~l~i 94 (229)
T TIGR03855 78 RERLREVARSSGRKVYI 94 (229)
T ss_pred HHHHHHHHHhcCCEEEE
Confidence 78888888888876554
|
Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur. |
| >TIGR01761 thiaz-red thiazolinyl imide reductase | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0069 Score=53.79 Aligned_cols=100 Identities=16% Similarity=0.211 Sum_probs=68.6
Q ss_pred ccHHHHHHHHhC--CCc-EEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCCh----hHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQ--GHD-VIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPAS----QDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~----~~~~~v~~~~~~l~~ 73 (286)
||...+..+.+. +++ |.++|+++++++++.+. |+..++|.+|++++.|++++++|+. ...+-+. .
T Consensus 13 ~G~~h~~al~~~~~~~eLvaV~d~~~erA~~~A~~~gi~~y~~~eell~d~Di~~V~ipt~~P~~~H~e~a~-------~ 85 (343)
T TIGR01761 13 FGQFYLAAFAAAPERFELAGILAQGSERSRALAHRLGVPLYCEVEELPDDIDIACVVVRSAIVGGQGSALAR-------A 85 (343)
T ss_pred HHHHHHHHHHhCCCCcEEEEEEcCCHHHHHHHHHHhCCCccCCHHHHhcCCCEEEEEeCCCCCCccHHHHHH-------H
Confidence 345556666654 356 44679999999988764 8888899999999899999998652 2222222 2
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+..|+-|+----....+++++.+..+++|..+.-
T Consensus 86 aL~aGkHVL~EKPla~~Ea~el~~~A~~~g~~l~v 120 (343)
T TIGR01761 86 LLARGIHVLQEHPLHPRDIQDLLRLAERQGRRYLV 120 (343)
T ss_pred HHhCCCeEEEcCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 34566655543344468888888888888876663
|
This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG). |
| >PF07479 NAD_Gly3P_dh_C: NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus; InterPro: IPR006109 NAD-dependent glycerol-3-phosphate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.91 E-value=3.9e-05 Score=59.66 Aligned_cols=109 Identities=15% Similarity=0.046 Sum_probs=70.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHHcc----CCCcccccccCCCCCcccc-CCCCCCCC--
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAK-LLSDVINTS----SGRCWSSEVYNPVPGVLSN-VPASNNYN-- 226 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~-~~~~~~~~~----~~~s~~~~~~~~~~~~~~~-~~~~~~~~-- 226 (286)
|....+++..|...+.+..++.|+..+++.+|-+++ ++++...-+ ++.|..++++..+..+..+ ...+....
T Consensus 21 Gi~~g~~~g~N~~aal~t~g~~Em~~l~~~~gg~~~~t~~~laGlGDLi~T~~s~~sRN~~~G~~l~~g~~~~~~~~~~~ 100 (149)
T PF07479_consen 21 GIADGLGLGDNTKAALITRGLAEMSRLAKALGGDPENTFFGLAGLGDLILTCTSDKSRNRRFGKALGKGGKSIEEAEKEM 100 (149)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHTSSCCGGGCSTTTHHHHHHHHHHTTSHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHHHcCCCCCChHHHHHHHHHHHHHHHHHHhCCCCcccccccchHhhhHHHhcCCCCCcHHHHHHHHccCCCHHHHHHhh
Confidence 556667788999999999999999999999999998 665533222 3333334554322212111 00000000
Q ss_pred CCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q psy764 227 GGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYK 263 (286)
Q Consensus 227 ~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 263 (286)
....+......++.+.+++++.++++|++.++++++.
T Consensus 101 ~~~~~vEG~~t~~~v~~l~~~~~i~~Pl~~~vy~Il~ 137 (149)
T PF07479_consen 101 LGGQTVEGVRTAKIVYELAEKYNIEFPLFTAVYKILY 137 (149)
T ss_dssp TTTS--HHHHHHHHHHHHHHHCT-GSHHHHHHHHHHH
T ss_pred hhcchHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHc
Confidence 1123456678888999999999999999999999875
|
1.1.8 from EC) (GPD) catalyzes the reversible reduction of dihydroxyacetone phosphate to glycerol-3-phosphate. It is a cytoplasmic protein, active as a homodimer [], each monomer containing an N-terminal NAD binding site []. In insects, it acts in conjunction with a mitochondrial alpha-glycerophosphate oxidase in the alpha-glycerophosphate cycle, which is essential for the production of energy used in insect flight [].; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0005975 carbohydrate metabolic process, 0055114 oxidation-reduction process; PDB: 2PLA_A 3K96_A 1N1G_A 1M67_A 1JDJ_A 1N1E_B 1EVZ_A 1EVY_A 1M66_A 1TXG_B .... |
| >TIGR02992 ectoine_eutC ectoine utilization protein EutC | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0032 Score=55.75 Aligned_cols=77 Identities=19% Similarity=0.314 Sum_probs=54.1
Q ss_pred cHHHHHHHH-hCCC-cEEEEcCCchHHHHHHHc-----CCc--ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 3 STLKLFFLQ-FQGH-DVIVYDKNTDASQTLAKE-----GAN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 3 G~~lA~~L~-~~G~-~V~~~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
|...+..|. ..+. +|++|||++++.+.+.+. |+. ..++++++++++|+|+.|.|... .++. .+
T Consensus 141 A~~~~~al~~~~~i~~v~V~~R~~~~a~~~a~~~~~~~g~~v~~~~~~~~av~~aDiVvtaT~s~~---p~i~-----~~ 212 (326)
T TIGR02992 141 ARLQLEALTLVRDIRSARIWARDSAKAEALALQLSSLLGIDVTAATDPRAAMSGADIIVTTTPSET---PILH-----AE 212 (326)
T ss_pred HHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhccCCEEEEecCCCC---cEec-----HH
Confidence 455666675 3553 699999999998887642 443 36789999999999999998643 3332 12
Q ss_pred cCCCCCEEEEcCCC
Q psy764 74 HAKPGVIVIDSSTV 87 (286)
Q Consensus 74 ~l~~g~ivid~st~ 87 (286)
.+++|..|...+.-
T Consensus 213 ~l~~g~~i~~vg~~ 226 (326)
T TIGR02992 213 WLEPGQHVTAMGSD 226 (326)
T ss_pred HcCCCcEEEeeCCC
Confidence 46788877765543
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423). |
| >PF02423 OCD_Mu_crystall: Ornithine cyclodeaminase/mu-crystallin family; InterPro: IPR003462 This entry represents the bacterial ornithine cyclodeaminase enzyme family, which catalyse the deamination of ornithine to proline [] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0014 Score=57.57 Aligned_cols=71 Identities=21% Similarity=0.413 Sum_probs=45.4
Q ss_pred CcEEEEcCCchHHHHHHHc----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 15 HDVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
.+|.+|+|++++++++.+. + +..++|+++++++||||++|.|..... .++. ...+++|..|+..++..
T Consensus 154 ~~v~v~~r~~~~~~~~~~~~~~~~~~v~~~~~~~~av~~aDii~taT~s~~~~-P~~~-----~~~l~~g~hi~~iGs~~ 227 (313)
T PF02423_consen 154 KEVRVYSRSPERAEAFAARLRDLGVPVVAVDSAEEAVRGADIIVTATPSTTPA-PVFD-----AEWLKPGTHINAIGSYT 227 (313)
T ss_dssp SEEEEE-SSHHHHHHHHHHHHCCCTCEEEESSHHHHHTTSSEEEE----SSEE-ESB------GGGS-TT-EEEE-S-SS
T ss_pred eEEEEEccChhHHHHHHHhhccccccceeccchhhhcccCCEEEEccCCCCCC-cccc-----HHHcCCCcEEEEecCCC
Confidence 4799999999998887653 3 456789999999999999999964310 3443 23578899988888776
Q ss_pred chH
Q psy764 89 PQV 91 (286)
Q Consensus 89 p~~ 91 (286)
|..
T Consensus 228 ~~~ 230 (313)
T PF02423_consen 228 PGM 230 (313)
T ss_dssp TTB
T ss_pred Cch
Confidence 653
|
The family also includes mu-crystallin, a mammalian homologue of bacterial ornithine cyclodeaminase [], which is the major component of the eye lens in several Australian marsupials. mRNA for mu-crystallin has also been found in human retina [].; PDB: 1U7H_B 1X7D_B 2I99_B 3HDJ_A 1VLL_B 1OMO_A. |
| >cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.0028 Score=48.77 Aligned_cols=67 Identities=22% Similarity=0.371 Sum_probs=49.0
Q ss_pred CCCcEEEEcCCchHHHHHH----HcCCc--ccC----CHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEE
Q psy764 13 QGHDVIVYDKNTDASQTLA----KEGAN--MAL----SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 13 ~G~~V~~~dr~~~~~~~l~----~~g~~--~~~----s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
.|.+|.+|+|+...-+.+. +.|++ .+. ++++.+++||+|+++++.+.- +. .+.+++|.+|+
T Consensus 27 ~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~~ADIVvsAtg~~~~----i~-----~~~ikpGa~Vi 97 (140)
T cd05212 27 DGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVHDADVVVVGSPKPEK----VP-----TEWIKPGATVI 97 (140)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHhhCCEEEEecCCCCc----cC-----HHHcCCCCEEE
Confidence 3668999999988766554 34543 344 788999999999999997532 22 23478999999
Q ss_pred EcCCCC
Q psy764 83 DSSTVD 88 (286)
Q Consensus 83 d~st~~ 88 (286)
|.+...
T Consensus 98 dvg~~~ 103 (140)
T cd05212 98 NCSPTK 103 (140)
T ss_pred EcCCCc
Confidence 987654
|
NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional |
| >COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.004 Score=53.31 Aligned_cols=78 Identities=17% Similarity=0.260 Sum_probs=60.7
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
|.+-|.||..+|.+|++--|...+ .+...+.|..+ .+++|+++.+|+|++-+||. .-.+|+.. .|.+.+++|+.+
T Consensus 30 G~ahalNLRDSGlnViiGlr~g~~s~~kA~~dGf~V-~~v~ea~k~ADvim~L~PDe-~q~~vy~~--~I~p~Lk~G~aL 105 (338)
T COG0059 30 GHAQALNLRDSGLNVIIGLRKGSSSWKKAKEDGFKV-YTVEEAAKRADVVMILLPDE-QQKEVYEK--EIAPNLKEGAAL 105 (338)
T ss_pred HHHHHhhhhhcCCcEEEEecCCchhHHHHHhcCCEe-ecHHHHhhcCCEEEEeCchh-hHHHHHHH--HhhhhhcCCceE
Confidence 677899999999999887766554 56666778775 47999999999999999975 44666652 388888888865
Q ss_pred EEc
Q psy764 82 IDS 84 (286)
Q Consensus 82 id~ 84 (286)
.-.
T Consensus 106 ~Fa 108 (338)
T COG0059 106 GFA 108 (338)
T ss_pred Eec
Confidence 543
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.0015 Score=58.74 Aligned_cols=83 Identities=18% Similarity=0.297 Sum_probs=56.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcc---c---CCHHHHhhcCcEEEEecCChhH-HHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANM---A---LSLSTLASGAEFIISMLPASQD-VLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~---~---~s~~e~~~~adivi~~v~~~~~-~~~v~~~~~~l~~ 73 (286)
+|...++.+.+.|.+|+++||++++.+.+... +..+ . .++.+.+.++|+||.|++.+.. ...++.. ....
T Consensus 178 vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~~v~~~~~~~~~l~~~l~~aDvVI~a~~~~g~~~p~lit~--~~l~ 255 (370)
T TIGR00518 178 VGTNAAKMANGLGATVTILDINIDRLRQLDAEFGGRIHTRYSNAYEIEDAVKRADLLIGAVLIPGAKAPKLVSN--SLVA 255 (370)
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCceeEeccCCHHHHHHHHccCCEEEEccccCCCCCCcCcCH--HHHh
Confidence 67888999999999999999999988877654 3311 1 2356677899999999853211 1111111 1334
Q ss_pred cCCCCCEEEEcCC
Q psy764 74 HAKPGVIVIDSST 86 (286)
Q Consensus 74 ~l~~g~ivid~st 86 (286)
.++++.+|||.+.
T Consensus 256 ~mk~g~vIvDva~ 268 (370)
T TIGR00518 256 QMKPGAVIVDVAI 268 (370)
T ss_pred cCCCCCEEEEEec
Confidence 4678899999874
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PLN00203 glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0027 Score=59.45 Aligned_cols=58 Identities=14% Similarity=0.224 Sum_probs=46.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc--CCc----ccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE--GAN----MALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--g~~----~~~s~~e~~~~adivi~~v~~~~ 59 (286)
||..++++|...|. +|++|||+.++++.+.+. +.. ..++..+++.++|+||+|++.+.
T Consensus 277 mG~~~a~~L~~~G~~~V~V~nRs~era~~La~~~~g~~i~~~~~~dl~~al~~aDVVIsAT~s~~ 341 (519)
T PLN00203 277 MGKLLVKHLVSKGCTKMVVVNRSEERVAALREEFPDVEIIYKPLDEMLACAAEADVVFTSTSSET 341 (519)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHhCCCceEeecHhhHHHHHhcCCEEEEccCCCC
Confidence 78999999999996 699999999999888754 321 33567788899999999987543
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.011 Score=44.87 Aligned_cols=83 Identities=24% Similarity=0.180 Sum_probs=60.8
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc-----ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN-----MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-----~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
|..+|..|.+.|++|++.|.++++++.+.+.+.. .++..-+.-+++|+|..+=|.++-.+.++. +......
T Consensus 28 G~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~~~~v~dDlf~p~~~~y~~a~liysirpp~el~~~~~~----la~~~~~ 103 (134)
T PRK04148 28 YFKVAKKLKESGFDVIVIDINEKAVEKAKKLGLNAFVDDLFNPNLEIYKNAKLIYSIRPPRDLQPFILE----LAKKINV 103 (134)
T ss_pred CHHHHHHHHHCCCEEEEEECCHHHHHHHHHhCCeEEECcCCCCCHHHHhcCCEEEEeCCCHHHHHHHHH----HHHHcCC
Confidence 4568999999999999999999999888776642 334455677899999999997765566654 6655555
Q ss_pred CCEEEEcCCCCc
Q psy764 78 GVIVIDSSTVDP 89 (286)
Q Consensus 78 g~ivid~st~~p 89 (286)
.-+|.-.|+-.|
T Consensus 104 ~~~i~~l~~e~~ 115 (134)
T PRK04148 104 PLIIKPLSGEEP 115 (134)
T ss_pred CEEEEcCCCCCC
Confidence 555555555443
|
|
| >PRK06046 alanine dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.0033 Score=55.62 Aligned_cols=80 Identities=15% Similarity=0.285 Sum_probs=57.2
Q ss_pred ccHHHHHHHHhC-C-CcEEEEcCCchHHHHHHHc-----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ-G-HDVIVYDKNTDASQTLAKE-----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~-G-~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
+|...+..|... + .+|.+|||++++.+++.+. + +..+++.+++++ +|+|++|.|+. ..++. .
T Consensus 140 qa~~h~~al~~~~~i~~v~v~~r~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~-aDiVv~aTps~---~P~~~-----~ 210 (326)
T PRK06046 140 QARTQLLALSEVFDLEEVRVYDRTKSSAEKFVERMSSVVGCDVTVAEDIEEACD-CDILVTTTPSR---KPVVK-----A 210 (326)
T ss_pred HHHHHHHHHHhhCCceEEEEECCCHHHHHHHHHHHHhhcCceEEEeCCHHHHhh-CCEEEEecCCC---CcEec-----H
Confidence 345566666532 3 3799999999988877643 4 345778999987 99999999974 24443 2
Q ss_pred ccCCCCCEEEEcCCCCch
Q psy764 73 KHAKPGVIVIDSSTVDPQ 90 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~ 90 (286)
+.+++|+.|...++..|.
T Consensus 211 ~~l~~g~hV~~iGs~~p~ 228 (326)
T PRK06046 211 EWIKEGTHINAIGADAPG 228 (326)
T ss_pred HHcCCCCEEEecCCCCCc
Confidence 346889998888877765
|
|
| >cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0025 Score=50.64 Aligned_cols=63 Identities=22% Similarity=0.278 Sum_probs=48.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..++++|.+.|.+|++.+|+. +++.+.+.++|+||.|++.+. ++.. +.++++.+|
T Consensus 56 ~G~~~a~~L~~~g~~V~v~~r~~--------------~~l~~~l~~aDiVIsat~~~~----ii~~-----~~~~~~~vi 112 (168)
T cd01080 56 VGKPLAALLLNRNATVTVCHSKT--------------KNLKEHTKQADIVIVAVGKPG----LVKG-----DMVKPGAVV 112 (168)
T ss_pred HHHHHHHHHhhCCCEEEEEECCc--------------hhHHHHHhhCCEEEEcCCCCc----eecH-----HHccCCeEE
Confidence 37789999999998999999874 356678899999999999863 3321 235668899
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.+..
T Consensus 113 IDla~p 118 (168)
T cd01080 113 IDVGIN 118 (168)
T ss_pred EEccCC
Confidence 998754
|
NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a |
| >PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.003 Score=46.96 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=60.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.|.-+.++|.++||+|+..|.+.+.+ .|...+.+++|.-...|++++++| ++.+.+++.+ +.. +..+.+|
T Consensus 15 ~g~~v~~~l~~~G~~v~~Vnp~~~~i-----~G~~~y~sl~e~p~~iDlavv~~~-~~~~~~~v~~---~~~-~g~~~v~ 84 (116)
T PF13380_consen 15 FGYRVLRNLKAAGYEVYPVNPKGGEI-----LGIKCYPSLAEIPEPIDLAVVCVP-PDKVPEIVDE---AAA-LGVKAVW 84 (116)
T ss_dssp HHHHHHHHHHHTT-EEEEESTTCSEE-----TTEE-BSSGGGCSST-SEEEE-S--HHHHHHHHHH---HHH-HT-SEEE
T ss_pred hHHHHHHHHHhCCCEEEEECCCceEE-----CcEEeeccccCCCCCCCEEEEEcC-HHHHHHHHHH---HHH-cCCCEEE
Confidence 35667888999999999998776533 378889999985489999999999 5677777764 322 3455677
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+..+ ...+++.+.+++.|++++.
T Consensus 85 ~~~g----~~~~~~~~~a~~~gi~vig 107 (116)
T PF13380_consen 85 LQPG----AESEELIEAAREAGIRVIG 107 (116)
T ss_dssp E-TT----S--HHHHHHHHHTT-EEEE
T ss_pred EEcc----hHHHHHHHHHHHcCCEEEe
Confidence 7655 4455666777788888774
|
|
| >PRK12549 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.0086 Score=51.89 Aligned_cols=101 Identities=19% Similarity=0.196 Sum_probs=66.4
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-C-----Cc--ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc-
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-G-----AN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI- 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g-----~~--~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l- 71 (286)
+|++.+..|.+.|. +|+++||+.++++.+.+. + .. ..++..+.++++|+||-|.|..-. ..-. ..+
T Consensus 138 aaraia~aL~~~G~~~I~I~nR~~~ka~~la~~l~~~~~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~--~~~~--~~~~ 213 (284)
T PRK12549 138 AGAAVAHALLTLGVERLTIFDVDPARAAALADELNARFPAARATAGSDLAAALAAADGLVHATPTGMA--KHPG--LPLP 213 (284)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhCCCeEEEeccchHhhhCCCCEEEECCcCCCC--CCCC--CCCC
Confidence 47788999999997 799999999999888653 1 11 123455667889999999885311 1000 001
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
...+.++.+++|+.-..+. + .+.+..+++|+..++
T Consensus 214 ~~~l~~~~~v~DivY~P~~-T-~ll~~A~~~G~~~~~ 248 (284)
T PRK12549 214 AELLRPGLWVADIVYFPLE-T-ELLRAARALGCRTLD 248 (284)
T ss_pred HHHcCCCcEEEEeeeCCCC-C-HHHHHHHHCCCeEec
Confidence 1236678899998765443 3 345556777877665
|
|
| >PRK05225 ketol-acid reductoisomerase; Validated | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.002 Score=58.51 Aligned_cols=137 Identities=17% Similarity=0.156 Sum_probs=83.0
Q ss_pred ccHHHHHHHHhCCCcEEEE------cCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQGHDVIVY------DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~------dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+|.+.|.+|...|++|++- |.+....+.+.+.|..+ .++.|+++.||+|++.+|+. .-..+.. .+.+.+
T Consensus 47 qG~AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~dGF~v-~~~~Ea~~~ADvVviLlPDt-~q~~v~~---~i~p~L 121 (487)
T PRK05225 47 QGLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKV-GTYEELIPQADLVINLTPDK-QHSDVVR---AVQPLM 121 (487)
T ss_pred HHHHHhCCCccccceeEEeccccccccccchHHHHHhcCCcc-CCHHHHHHhCCEEEEcCChH-HHHHHHH---HHHhhC
Confidence 5888899999999999843 33344555566678766 67999999999999999986 4455554 488999
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCc-eEeccCCCCHHhh-----hcCceEEE-ec--C--CHhhHHHHHHHHHHh
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQIT-FLDAPVSGGTKAA-----QEATLTFM-VG--G--DKSSLEKAKPILKCM 144 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~-~~~~pv~g~~~~a-----~~g~l~~~-~g--g--~~~~~~~~~~ll~~~ 144 (286)
++|.++.-.-.-..... ......++. ++-+|=..|+.-- ..|.-+++ +- - +..+.+.+..+-..+
T Consensus 122 K~Ga~L~fsHGFni~~~----~i~~~~dvdVimvAPKgpG~~vR~~y~~G~Gvp~l~AV~~~qD~~g~a~~~ala~a~~i 197 (487)
T PRK05225 122 KQGAALGYSHGFNIVEV----GEQIRKDITVVMVAPKCPGTEVREEYKRGFGVPTLIAVHPENDPKGEGMAIAKAWAAAT 197 (487)
T ss_pred CCCCEEEecCCceeeeC----ceeCCCCCcEEEECCCCCCchHHHHHhcCCCceEEEEEeecCCCCchHHHHHHHHHHHh
Confidence 99987764332221100 111122333 3345643333321 12332222 22 1 234677777787888
Q ss_pred cCC
Q psy764 145 GRN 147 (286)
Q Consensus 145 g~~ 147 (286)
|..
T Consensus 198 G~~ 200 (487)
T PRK05225 198 GGH 200 (487)
T ss_pred CCC
Confidence 764
|
|
| >PRK00045 hemA glutamyl-tRNA reductase; Reviewed | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0015 Score=59.92 Aligned_cols=83 Identities=17% Similarity=0.274 Sum_probs=55.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CCcc--cCCHHHHhhcCcEEEEecCChhHHH--HHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GANM--ALSLSTLASGAEFIISMLPASQDVL--DAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~--~~s~~e~~~~adivi~~v~~~~~~~--~v~~~~~~l~~~l 75 (286)
||..+++.|...|. +|+++||++++.+.+.+. |... ..+..+.+.++|+||.|++.+..+- +.+.. ++...-
T Consensus 193 iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~~~~~l~~aDvVI~aT~s~~~~i~~~~l~~--~~~~~~ 270 (423)
T PRK00045 193 MGELVAKHLAEKGVRKITVANRTLERAEELAEEFGGEAIPLDELPEALAEADIVISSTGAPHPIIGKGMVER--ALKARR 270 (423)
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCCcEeeHHHHHHHhccCCEEEECCCCCCcEEcHHHHHH--HHhhcc
Confidence 78889999999997 799999999998877654 4332 2456677889999999998764321 11110 000001
Q ss_pred CCCCEEEEcCC
Q psy764 76 KPGVIVIDSST 86 (286)
Q Consensus 76 ~~g~ivid~st 86 (286)
..+.+++|.+.
T Consensus 271 ~~~~vviDla~ 281 (423)
T PRK00045 271 HRPLLLVDLAV 281 (423)
T ss_pred CCCeEEEEeCC
Confidence 24578999863
|
|
| >PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF) | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0056 Score=48.13 Aligned_cols=42 Identities=21% Similarity=0.320 Sum_probs=28.0
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCc
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDP 89 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p 89 (286)
.++++.++++|+||++++.+.-++. ..+++|.+|||+++...
T Consensus 71 ~~l~~~~~~ADIVVsa~G~~~~i~~---------~~ik~gavVIDvG~~~~ 112 (160)
T PF02882_consen 71 KNLQEITRRADIVVSAVGKPNLIKA---------DWIKPGAVVIDVGINYV 112 (160)
T ss_dssp SSHHHHHTTSSEEEE-SSSTT-B-G---------GGS-TTEEEEE--CEEE
T ss_pred CcccceeeeccEEeeeecccccccc---------ccccCCcEEEecCCccc
Confidence 4678889999999999997643221 24689999999987544
|
Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A .... |
| >PRK10669 putative cation:proton antiport protein; Provisional | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.013 Score=55.83 Aligned_cols=65 Identities=12% Similarity=0.158 Sum_probs=48.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-CC--HHHH-----hhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-LS--LSTL-----ASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s--~~e~-----~~~adivi~~v~~~~~~~~v~~ 66 (286)
+|+.+++.|.++|++|.++|.|+++++++.+.|..+. .| -.++ ++++|.++++++++.....+..
T Consensus 428 ~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~~~~~~iv~ 500 (558)
T PRK10669 428 VGSLLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNGYEAGEIVA 500 (558)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCChHHHHHHHH
Confidence 6899999999999999999999999999988764321 11 1222 3589999999998765444443
|
|
| >PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0075 Score=51.89 Aligned_cols=63 Identities=17% Similarity=0.268 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++..|.+.|..|++++.. +.++.+.++++|+||++++.+.- +. ...+++|.+|
T Consensus 170 VGkPla~lL~~~~atVt~~hs~--------------t~~l~~~~~~ADIVV~avG~~~~----i~-----~~~ik~gavV 226 (285)
T PRK14189 170 VGKPMAMLLLQAGATVTICHSK--------------TRDLAAHTRQADIVVAAVGKRNV----LT-----ADMVKPGATV 226 (285)
T ss_pred cHHHHHHHHHHCCCEEEEecCC--------------CCCHHHHhhhCCEEEEcCCCcCc----cC-----HHHcCCCCEE
Confidence 4666666666666666655422 24678889999999999997642 21 1357899999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.++.
T Consensus 227 IDVGin 232 (285)
T PRK14189 227 IDVGMN 232 (285)
T ss_pred EEcccc
Confidence 999864
|
|
| >PRK07589 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0049 Score=54.81 Aligned_cols=87 Identities=17% Similarity=0.254 Sum_probs=57.2
Q ss_pred CcEEEEcCCchHHHHHHHc----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 15 HDVIVYDKNTDASQTLAKE----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
.+|++|||++++.+.+.+. + +..++++++++++||||++|.++.. -..++. .+.+++|..|.-.++..
T Consensus 155 ~~V~v~~r~~~~a~~~~~~~~~~~~~v~~~~~~~~av~~ADIIvtaT~S~~-~~Pvl~-----~~~lkpG~hV~aIGs~~ 228 (346)
T PRK07589 155 EEIRLYDIDPAATAKLARNLAGPGLRIVACRSVAEAVEGADIITTVTADKT-NATILT-----DDMVEPGMHINAVGGDC 228 (346)
T ss_pred eEEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCHHHHHhcCCEEEEecCCCC-CCceec-----HHHcCCCcEEEecCCCC
Confidence 4899999999998877532 3 4457899999999999999998532 123333 13467898887777766
Q ss_pred chHHHHHHHHHHhcCCceEe
Q psy764 89 PQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 89 p~~~~~~~~~~~~~g~~~~~ 108 (286)
|.. +++-..+-.+.-.|+|
T Consensus 229 p~~-~Eld~~~l~~a~v~vD 247 (346)
T PRK07589 229 PGK-TELHPDILRRARVFVE 247 (346)
T ss_pred CCc-ccCCHHHHhcCEEEEC
Confidence 653 3443333222224555
|
|
| >PRK00048 dihydrodipicolinate reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.011 Score=50.40 Aligned_cols=103 Identities=14% Similarity=0.173 Sum_probs=65.3
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.+.+. ++++. ++|+++++.......++...+++.++++++|+|+.+.| |....+++. ..+..|+
T Consensus 13 mG~~i~~~l~~~~~~elvav~d~~~~~~~~~~~~~i~~~~dl~~ll~~~DvVid~t~-p~~~~~~~~------~al~~G~ 85 (257)
T PRK00048 13 MGRELIEAVEAAEDLELVAAVDRPGSPLVGQGALGVAITDDLEAVLADADVLIDFTT-PEATLENLE------FALEHGK 85 (257)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccccCCCCccccCCHHHhccCCCEEEECCC-HHHHHHHHH------HHHHcCC
Confidence 788888888764 56655 57998876554433366677899999888999998877 445555543 2344565
Q ss_pred EEEEcCC-CCchHHHHHHHHHHhcCCceEeccCCC
Q psy764 80 IVIDSST-VDPQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 80 ivid~st-~~p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
-++..+| .++....++.+ .. ++...+-+|.+.
T Consensus 86 ~vvigttG~s~~~~~~l~~-aa-~~~~v~~s~n~s 118 (257)
T PRK00048 86 PLVIGTTGFTEEQLAELEE-AA-KKIPVVIAPNFS 118 (257)
T ss_pred CEEEECCCCCHHHHHHHHH-Hh-cCCCEEEECcch
Confidence 5544343 45666666665 33 455555445443
|
|
| >PRK08291 ectoine utilization protein EutC; Validated | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.0094 Score=52.85 Aligned_cols=76 Identities=20% Similarity=0.393 Sum_probs=51.8
Q ss_pred cHHHHHHHHh-CC-CcEEEEcCCchHHHHHHHc-----CCc--ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 3 STLKLFFLQF-QG-HDVIVYDKNTDASQTLAKE-----GAN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 3 G~~lA~~L~~-~G-~~V~~~dr~~~~~~~l~~~-----g~~--~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
|.+.+..|.. .+ .+|.+|||++++.+.+.+. |+. ..++++++++++|+|++|.|... .++.. .
T Consensus 144 a~~~~~al~~~~~~~~V~v~~R~~~~a~~l~~~~~~~~g~~v~~~~d~~~al~~aDiVi~aT~s~~---p~i~~-----~ 215 (330)
T PRK08291 144 ARLQLEALTLVRPIREVRVWARDAAKAEAYAADLRAELGIPVTVARDVHEAVAGADIIVTTTPSEE---PILKA-----E 215 (330)
T ss_pred HHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHhhccCceEEEeCCHHHHHccCCEEEEeeCCCC---cEecH-----H
Confidence 4455555653 34 5799999999999888652 443 46789999999999999998642 33321 2
Q ss_pred cCCCCCEEEEcCC
Q psy764 74 HAKPGVIVIDSST 86 (286)
Q Consensus 74 ~l~~g~ivid~st 86 (286)
.+++|..|....+
T Consensus 216 ~l~~g~~v~~vg~ 228 (330)
T PRK08291 216 WLHPGLHVTAMGS 228 (330)
T ss_pred HcCCCceEEeeCC
Confidence 2567776665444
|
|
| >PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0081 Score=51.77 Aligned_cols=63 Identities=16% Similarity=0.229 Sum_probs=48.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.++|..|.+.|..|++.+++. .++.+.+++||+||.+++.+.-+.. ..+++|.+|
T Consensus 170 VG~pla~lL~~~gatVtv~~s~t--------------~~l~~~~~~ADIVIsAvg~p~~i~~---------~~vk~gavV 226 (286)
T PRK14175 170 VGQPVSKLLLQKNASVTILHSRS--------------KDMASYLKDADVIVSAVGKPGLVTK---------DVVKEGAVI 226 (286)
T ss_pred hHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHHhhCCEEEECCCCCcccCH---------HHcCCCcEE
Confidence 78888888888888888887642 3577889999999999997642211 236789999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.++.
T Consensus 227 IDvGi~ 232 (286)
T PRK14175 227 IDVGNT 232 (286)
T ss_pred EEcCCC
Confidence 998763
|
|
| >PRK06199 ornithine cyclodeaminase; Validated | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0033 Score=56.65 Aligned_cols=64 Identities=9% Similarity=0.194 Sum_probs=45.4
Q ss_pred CcEEEEcCCchHHHHHHHc------C---CcccCCHHHHhhcCcEEEEecCChh---HHHHHhcCCccccccCCCCCEEE
Q psy764 15 HDVIVYDKNTDASQTLAKE------G---ANMALSLSTLASGAEFIISMLPASQ---DVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~------g---~~~~~s~~e~~~~adivi~~v~~~~---~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
.+|.+|||++++++.+.+. | +.+++|+++++++||||++|.+... ....++. ...+++|..|+
T Consensus 182 ~~V~v~~r~~~~a~~f~~~~~~~~~~~~~v~~~~s~~eav~~ADIVvtaT~s~~~~~s~~Pv~~-----~~~lkpG~hv~ 256 (379)
T PRK06199 182 DTIKIKGRGQKSLDSFATWVAETYPQITNVEVVDSIEEVVRGSDIVTYCNSGETGDPSTYPYVK-----REWVKPGAFLL 256 (379)
T ss_pred cEEEEECCCHHHHHHHHHHHHHhcCCCceEEEeCCHHHHHcCCCEEEEccCCCCCCCCcCcEec-----HHHcCCCcEEe
Confidence 3799999999998776531 2 4567899999999999999997532 1123332 23467887776
Q ss_pred E
Q psy764 83 D 83 (286)
Q Consensus 83 d 83 (286)
.
T Consensus 257 ~ 257 (379)
T PRK06199 257 M 257 (379)
T ss_pred c
Confidence 3
|
|
| >COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.049 Score=44.84 Aligned_cols=98 Identities=17% Similarity=0.184 Sum_probs=62.4
Q ss_pred ccHHHHHHHHhCC---C-cEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQG---H-DVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G---~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||..+...+ +.| + .+.+|||+.+++..+.+. +....+++.|.+++.|+++=|-. ++++++... +.|.
T Consensus 11 IG~~l~e~v-~~~~~~~e~v~v~D~~~ek~~~~~~~~~~~~~s~ide~~~~~DlvVEaAS-~~Av~e~~~------~~L~ 82 (255)
T COG1712 11 IGKFLLELV-RDGRVDFELVAVYDRDEEKAKELEASVGRRCVSDIDELIAEVDLVVEAAS-PEAVREYVP------KILK 82 (255)
T ss_pred HHHHHHHHH-hcCCcceeEEEEecCCHHHHHHHHhhcCCCccccHHHHhhccceeeeeCC-HHHHHHHhH------HHHh
Confidence 455555543 444 4 488999999999888654 66667889999999999999876 688888754 2344
Q ss_pred CCCEEEEcCCC--CchHHHHHHHHHHhcCCceE
Q psy764 77 PGVIVIDSSTV--DPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 77 ~g~ivid~st~--~p~~~~~~~~~~~~~g~~~~ 107 (286)
.|.-+|-+|+. .....++....+.+.+...+
T Consensus 83 ~g~d~iV~SVGALad~~l~erl~~lak~~~~rv 115 (255)
T COG1712 83 AGIDVIVMSVGALADEGLRERLRELAKCGGARV 115 (255)
T ss_pred cCCCEEEEechhccChHHHHHHHHHHhcCCcEE
Confidence 55544444543 32233333333444444433
|
|
| >PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.019 Score=55.21 Aligned_cols=98 Identities=13% Similarity=0.131 Sum_probs=65.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-CC--HHHH-----hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-LS--LSTL-----ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s--~~e~-----~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.++|+++++.|.|+++++.+.+.|..+. .| -.+. ++++|.++++++++..-..+.. ...
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~~~n~~i~~----~~r 486 (601)
T PRK03659 411 FGQVIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEPEDTMKIVE----LCQ 486 (601)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCHHHHHHHHH----HHH
Confidence 6899999999999999999999999999988774332 11 1222 4689999999999876655554 222
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
...|...|+-. +.++.. .+.+.+.|+..+-
T Consensus 487 ~~~p~~~IiaR-a~~~~~----~~~L~~~Ga~~vv 516 (601)
T PRK03659 487 QHFPHLHILAR-ARGRVE----AHELLQAGVTQFS 516 (601)
T ss_pred HHCCCCeEEEE-eCCHHH----HHHHHhCCCCEEE
Confidence 34444333322 222332 3455667877664
|
|
| >PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0098 Score=53.89 Aligned_cols=107 Identities=22% Similarity=0.264 Sum_probs=66.9
Q ss_pred ccHHHHHHHHhCC-C-cEEEEcCCchHHHHHHHc--C-------Cccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQG-H-DVIVYDKNTDASQTLAKE--G-------ANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~-~V~~~dr~~~~~~~l~~~--g-------~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||+.+++.|++.+ + +|++.||+.++++++.+. + +.+. .++.++++++|+||-|+|.. .-..++.
T Consensus 9 vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin~~gp~-~~~~v~~-- 85 (386)
T PF03435_consen 9 VGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVINCAGPF-FGEPVAR-- 85 (386)
T ss_dssp HHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE-SSGG-GHHHHHH--
T ss_pred HHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEECCccc-hhHHHHH--
Confidence 7899999999887 4 899999999999888652 1 1111 23567788999999999854 3344432
Q ss_pred ccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHH
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTK 116 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~ 116 (286)
..+..|.-+||.|- ......++.+...+.|..++ .+....+..
T Consensus 86 ----~~i~~g~~yvD~~~-~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~ 129 (386)
T PF03435_consen 86 ----ACIEAGVHYVDTSY-VTEEMLALDEEAKEAGVTALPGCGFDPGLS 129 (386)
T ss_dssp ----HHHHHT-EEEESS--HHHHHHHCHHHHHHTTSEEE-S-BTTTBHH
T ss_pred ----HHHHhCCCeeccch-hHHHHHHHHHHHHhhCCEEEeCcccccchH
Confidence 23456778888322 24444555666666776655 333444433
|
Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A. |
| >cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.01 Score=47.90 Aligned_cols=75 Identities=17% Similarity=0.176 Sum_probs=51.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc---CCccc--CC----HHHHhhcCcEEEEecCChhH-HHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE---GANMA--LS----LSTLASGAEFIISMLPASQD-VLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~---g~~~~--~s----~~e~~~~adivi~~v~~~~~-~~~v~~~~~~l 71 (286)
+|.++|.-|.++|..|++.|.+.... +... +-..+ .+ +.+.+++|||||++++.+.- +.
T Consensus 74 VGkPla~lL~~~~AtVti~~~~~~~~--~~~~~~~~hs~t~~~~~~~~l~~~~~~ADIVIsAvG~~~~~i~--------- 142 (197)
T cd01079 74 VGRPLAALLANDGARVYSVDINGIQV--FTRGESIRHEKHHVTDEEAMTLDCLSQSDVVITGVPSPNYKVP--------- 142 (197)
T ss_pred chHHHHHHHHHCCCEEEEEecCcccc--cccccccccccccccchhhHHHHHhhhCCEEEEccCCCCCccC---------
Confidence 79999999999999999997654221 1100 00111 12 67889999999999998643 11
Q ss_pred cccCCCCCEEEEcCCC
Q psy764 72 LKHAKPGVIVIDSSTV 87 (286)
Q Consensus 72 ~~~l~~g~ivid~st~ 87 (286)
.+.+++|.+|||.++.
T Consensus 143 ~d~ik~GavVIDVGi~ 158 (197)
T cd01079 143 TELLKDGAICINFASI 158 (197)
T ss_pred HHHcCCCcEEEEcCCC
Confidence 2346789999999865
|
The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional |
| >TIGR01035 hemA glutamyl-tRNA reductase | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.0053 Score=56.19 Aligned_cols=58 Identities=22% Similarity=0.321 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-CCc--ccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-GAN--MALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~--~~~s~~e~~~~adivi~~v~~~~ 59 (286)
||..+++.|...| .+|++|||+.++.+.+.+. |.. ...++.+.+.++|+||.|++.+.
T Consensus 191 iG~~~a~~L~~~G~~~V~v~~rs~~ra~~la~~~g~~~i~~~~l~~~l~~aDvVi~aT~s~~ 252 (417)
T TIGR01035 191 MGELVAKHLLRKGVGKILIANRTYERAEDLAKELGGEAVKFEDLEEYLAEADIVISSTGAPH 252 (417)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCeEeeHHHHHHHHhhCCEEEECCCCCC
Confidence 7889999999999 7899999999988777653 432 22456778889999999998654
|
This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA. |
| >PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ] | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.011 Score=44.51 Aligned_cols=102 Identities=20% Similarity=0.151 Sum_probs=61.1
Q ss_pred ccHHHHHHHHh-CCCcE-EEEcCCch-H----HHHHH---HcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQF-QGHDV-IVYDKNTD-A----SQTLA---KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~-~G~~V-~~~dr~~~-~----~~~l~---~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||+.+++.+.+ .|+++ .+++|+++ . +..+. ..|+.+.++++++.+.+|++|-.. .|+.+.+.+..
T Consensus 12 MG~~i~~~i~~~~~~~lv~~v~~~~~~~~g~d~g~~~~~~~~~~~v~~~l~~~~~~~DVvIDfT-~p~~~~~~~~~---- 86 (124)
T PF01113_consen 12 MGRAIAEAILESPGFELVGAVDRKPSAKVGKDVGELAGIGPLGVPVTDDLEELLEEADVVIDFT-NPDAVYDNLEY---- 86 (124)
T ss_dssp HHHHHHHHHHHSTTEEEEEEEETTTSTTTTSBCHHHCTSST-SSBEBS-HHHHTTH-SEEEEES--HHHHHHHHHH----
T ss_pred HHHHHHHHHHhcCCcEEEEEEecCCcccccchhhhhhCcCCcccccchhHHHhcccCCEEEEcC-ChHHhHHHHHH----
Confidence 89999999988 67774 45688872 1 11121 347888899999999999999887 46777766542
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccC
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPV 111 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv 111 (286)
.++.|..+|-.+|.....-.+..+.+.++ +.++-+|.
T Consensus 87 --~~~~g~~~ViGTTG~~~~~~~~l~~~a~~-~~vl~a~N 123 (124)
T PF01113_consen 87 --ALKHGVPLVIGTTGFSDEQIDELEELAKK-IPVLIAPN 123 (124)
T ss_dssp --HHHHT-EEEEE-SSSHHHHHHHHHHHTTT-SEEEE-SS
T ss_pred --HHhCCCCEEEECCCCCHHHHHHHHHHhcc-CCEEEeCC
Confidence 23447777777776644333333334443 55555554
|
In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A .... |
| >PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.037 Score=40.74 Aligned_cols=97 Identities=18% Similarity=0.186 Sum_probs=61.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-C---CHHH----HhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-L---SLST----LASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~---s~~e----~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.+.+.+|.+.|+++++++.+.+.|..+. . ++.. -+++++.++++.+++..-..+.. ...
T Consensus 9 ~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~a~~vv~~~~~d~~n~~~~~----~~r 84 (116)
T PF02254_consen 9 IGREIAEQLKEGGIDVVVIDRDPERVEELREEGVEVIYGDATDPEVLERAGIEKADAVVILTDDDEENLLIAL----LAR 84 (116)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTSEEEES-TTSHHHHHHTTGGCESEEEEESSSHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcccccccccchhhhHHhhcCccccCEEEEccCCHHHHHHHHH----HHH
Confidence 5788999999977799999999999999998875332 1 1211 14689999999998654444433 223
Q ss_pred cCCC-CCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKP-GVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~-g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+.+ .++++-..+ + +..+.+...|+..+=
T Consensus 85 ~~~~~~~ii~~~~~--~----~~~~~l~~~g~d~vi 114 (116)
T PF02254_consen 85 ELNPDIRIIARVND--P----ENAELLRQAGADHVI 114 (116)
T ss_dssp HHTTTSEEEEEESS--H----HHHHHHHHTT-SEEE
T ss_pred HHCCCCeEEEEECC--H----HHHHHHHHCCcCEEE
Confidence 3334 345553332 2 224445556765543
|
The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A .... |
| >PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.027 Score=54.36 Aligned_cols=103 Identities=21% Similarity=0.208 Sum_probs=67.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-CC--HHHH-----hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-LS--LSTL-----ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s--~~e~-----~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.++|+++++.|.|+++++.+++.|..+. .| -.+. ++++|.+++++++++.-..+.. ...
T Consensus 411 ~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~~~n~~i~~----~ar 486 (621)
T PRK03562 411 FGQIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTSLQLVE----LVK 486 (621)
T ss_pred HHHHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCHHHHHHHHH----HHH
Confidence 6899999999999999999999999999988775332 11 1222 3589999999998766555544 222
Q ss_pred cCCCC-CEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCC
Q psy764 74 HAKPG-VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 114 (286)
Q Consensus 74 ~l~~g-~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~ 114 (286)
...|. ++++-+ .++ +-...+.+.|+.++.-+...+
T Consensus 487 ~~~p~~~iiaRa--~d~----~~~~~L~~~Gad~v~~e~~e~ 522 (621)
T PRK03562 487 EHFPHLQIIARA--RDV----DHYIRLRQAGVEKPERETFEG 522 (621)
T ss_pred HhCCCCeEEEEE--CCH----HHHHHHHHCCCCEEehhhHhH
Confidence 23344 344422 222 224456677888776444433
|
|
| >PF05222 AlaDh_PNT_N: Alanine dehydrogenase/PNT, N-terminal domain; InterPro: IPR007886 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.053 Score=41.51 Aligned_cols=97 Identities=22% Similarity=0.252 Sum_probs=64.3
Q ss_pred HHHHHHhCCCcEEEEcCCchH----HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 6 KLFFLQFQGHDVIVYDKNTDA----SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 6 lA~~L~~~G~~V~~~dr~~~~----~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.+..|.+.||+|++=.-.-+. =+...+.|+.+.++..|+..+||+|+-.=+ +. .+ -.+.+++|+++
T Consensus 19 ~v~~L~~~G~~V~VE~gaG~~a~fsD~~Y~~aGA~I~~~~~ev~~~adiIl~v~~-p~-~~--------e~~~l~~g~~l 88 (136)
T PF05222_consen 19 DVKKLVKLGHEVLVESGAGEGAGFSDEEYEEAGAEIVSRAEEVYSDADIILKVKP-PS-EE--------ELALLKPGQTL 88 (136)
T ss_dssp HHHHHHHTTSEEEEETTTTGGGTB-HHHHHHTTEEEESSHHHHHTTSSEEEESS-----GG--------GGGGS-TTCEE
T ss_pred HHHHHHhCCCEEEEECCCCCcCcccHHHHhhCCcEEecCchhhcccCCEEEEECC-CC-HH--------HHhhcCCCcEE
Confidence 467889999999875322111 144567899999999999999998776444 42 11 23457899999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 114 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~ 114 (286)
+-.. .|....++.+.+.++++..++.-....
T Consensus 89 i~~~--~~~~~~~~~~~l~~~~it~~a~E~ipr 119 (136)
T PF05222_consen 89 IGFL--HPAQNKELLEALAKKGITAFALELIPR 119 (136)
T ss_dssp EEE----GGGHHHHHHHHHHCTEEEEEGGGSBS
T ss_pred EEee--ccccCHHHHHHHHHCCCEEEEhhhCcC
Confidence 9544 444567777888889988887644433
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins, represented in this entry, and to a central glycine-rich region which is part of the NAD(H)-binding site.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1X15_A 2BRU_A 1X14_B 1X13_A 2EEZ_F 2VOE_F 2VHV_B 2VHY_A 2VHX_A 2VHW_A .... |
| >PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.016 Score=49.83 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=44.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++.-|.+.|..|++.++. +.++++.++++|+||.+++.+.-+.. ..+++|.+|
T Consensus 171 VG~Pla~lL~~~~atVtv~hs~--------------T~~l~~~~~~ADIvi~avG~p~~v~~---------~~vk~gavV 227 (285)
T PRK10792 171 VGRPMSLELLLAGCTVTVCHRF--------------TKNLRHHVRNADLLVVAVGKPGFIPG---------EWIKPGAIV 227 (285)
T ss_pred cHHHHHHHHHHCCCeEEEEECC--------------CCCHHHHHhhCCEEEEcCCCcccccH---------HHcCCCcEE
Confidence 5666666666666666666543 24688899999999999976653222 346789999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.++.
T Consensus 228 IDvGin 233 (285)
T PRK10792 228 IDVGIN 233 (285)
T ss_pred EEcccc
Confidence 998754
|
|
| >PRK08306 dipicolinate synthase subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.01 Score=51.77 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=63.9
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhH---HHHHhcC-----CccccccCC
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD---VLDAYDG-----SDGILKHAK 76 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~---~~~v~~~-----~~~l~~~l~ 76 (286)
-+++.|.+.|++|.++.-+.+.. ...|+..+++.+++++++|+|++.+|.... ++..+.. ....++.++
T Consensus 16 ~~~~~l~~~G~~v~~~g~~~~~~---~~~g~~~~~~~~~~~~~ad~ii~~~p~~~~~~~i~~~~~~~~~~~~~~~l~~l~ 92 (296)
T PRK08306 16 ELIRKLVELGAKVSLVGFDQLDH---GFTGATKSSSLEEALSDVDVIILPVPGTNDEGNVDTVFSNEKLVLTEELLELTP 92 (296)
T ss_pred HHHHHHHHCCCEEEEEecccccc---ccCCceeeccHHHHhccCCEEEECCccccCCceeeccccccCCcchHHHHHhcC
Confidence 47889999999999876543211 234888888899999999999999884321 1222110 112455678
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEecc
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 110 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~p 110 (286)
++++++ .+...|... +.+.++|+.+++.+
T Consensus 93 ~~~~v~-~G~~~~~~~----~~~~~~gi~~~~~~ 121 (296)
T PRK08306 93 EHCTIF-SGIANPYLK----ELAKETNRKLVELF 121 (296)
T ss_pred CCCEEE-EecCCHHHH----HHHHHCCCeEEEEe
Confidence 887555 355555532 44568888887644
|
|
| >COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.047 Score=48.34 Aligned_cols=95 Identities=20% Similarity=0.263 Sum_probs=66.6
Q ss_pred HHHHHHhCCC---cEEEEcCCchHHHHHHHc-CC-cccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 6 KLFFLQFQGH---DVIVYDKNTDASQTLAKE-GA-NMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 6 lA~~L~~~G~---~V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
.+..+.+.+. -|.++|+++++++.+.+. |+ ..++|+++++++ .|+|++|+|+....+.++. ++..|
T Consensus 19 ~~~~~~~~~~~~~~vav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~-------AL~aG 91 (342)
T COG0673 19 HLPALAALGGGLELVAVVDRDPERAEAFAEEFGIAKAYTDLEELLADPDIDAVYIATPNALHAELALA-------ALEAG 91 (342)
T ss_pred hHHHHHhCCCceEEEEEecCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEcCCChhhHHHHHH-------HHhcC
Confidence 4445666553 366779999999888765 76 478899999976 5899999998766665543 35566
Q ss_pred CEEE-Ec-CCCCchHHHHHHHHHHhcCCceE
Q psy764 79 VIVI-DS-STVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 79 ~ivi-d~-st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
+-|+ +. =+.++.+++++.+..++.|..+.
T Consensus 92 khVl~EKPla~t~~ea~~l~~~a~~~~~~l~ 122 (342)
T COG0673 92 KHVLCEKPLALTLEEAEELVELARKAGVKLM 122 (342)
T ss_pred CEEEEcCCCCCCHHHHHHHHHHHHHcCCcee
Confidence 6444 42 24567777888888777765544
|
|
| >KOG3007|consensus | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.0091 Score=50.17 Aligned_cols=85 Identities=21% Similarity=0.225 Sum_probs=61.9
Q ss_pred CcEEEEcCCchHHHHHHHc----------CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEc
Q psy764 15 HDVIVYDKNTDASQTLAKE----------GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDS 84 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~----------g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~ 84 (286)
.+|.+|||+++.++.+++. -+..+.+..+++..+|||+.|.++ .+.++++ ..++||+ .||.
T Consensus 165 reVrIwnht~e~A~~la~~lsk~~~~iqie~~~~qsl~~aV~~sDIIs~atls---tePilfg-----ewlkpgt-hIdl 235 (333)
T KOG3007|consen 165 REVRIWNHTNEMALDLAKSLSKLFSNIQIELNQYQSLNGAVSNSDIISGATLS---TEPILFG-----EWLKPGT-HIDL 235 (333)
T ss_pred eEEEeecCChHHHHHHHHHhhhcccceEEEEEehhhhhcccccCceEEecccc---CCceeee-----eeecCCc-eEee
Confidence 3799999999988887662 256678899999999999999985 3555542 4567774 5554
Q ss_pred CCCCchHHHHHHHHHHhcCCceEe
Q psy764 85 STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 85 st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
=........+.-+.+-+.+..|+|
T Consensus 236 VGsf~p~mhEcDdelIq~a~vfVD 259 (333)
T KOG3007|consen 236 VGSFKPVMHECDDELIQSACVFVD 259 (333)
T ss_pred eccCCchHHHHhHHHhhhheEEEe
Confidence 444444466777777777888888
|
|
| >COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.011 Score=53.47 Aligned_cols=58 Identities=22% Similarity=0.294 Sum_probs=47.6
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-CC--cccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-GA--NMALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~--~~~~s~~e~~~~adivi~~v~~~~ 59 (286)
||.-.|++|.++| .+|++.||+.++++++++. |+ ...+.+.+.+.++|+||+|...|.
T Consensus 189 m~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~~~~~~l~el~~~l~~~DvVissTsa~~ 250 (414)
T COG0373 189 MGELVAKHLAEKGVKKITIANRTLERAEELAKKLGAEAVALEELLEALAEADVVISSTSAPH 250 (414)
T ss_pred HHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhCCeeecHHHHHHhhhhCCEEEEecCCCc
Confidence 7888999999999 5899999999999999765 63 334566778899999999987553
|
|
| >TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.07 Score=49.57 Aligned_cols=106 Identities=13% Similarity=0.067 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHccC-CCcccccccCCC----CCccccCCCCCCC
Q psy764 157 GQVAKLCNNMLLGVTMMGVAEAMNLGVK------LGMNAKLLSDVINTSS-GRCWSSEVYNPV----PGVLSNVPASNNY 225 (286)
Q Consensus 157 a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gl~~~~~~~~~~~~~-~~s~~~~~~~~~----~~~~~~~~~~~~~ 225 (286)
++.+|.++|.+.+..+.+++|.+.+.++ .++|..++.++-+.+. -+||+++..... |++ .+.+ +
T Consensus 312 ~~~i~~l~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~GcIIrs~lL~~i~~a~~~~~~l-~~l~----~ 386 (467)
T TIGR00873 312 EEFIEDVRQALYASKIISYAQGFMLLREASEEYGWDLNLGEIALIWRGGCIIRSGFLDKITKAFAENPDL-ANLL----L 386 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHHcCCCh-hhhc----C
Confidence 7899999999999999999999999987 7899999999988773 566665442221 110 0000 1
Q ss_pred CCCcc--chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 226 NGGFK--ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 226 ~~~f~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
++.|. +......++.+...+-+.|+|.|.+.++..+|.....
T Consensus 387 ~~~~~~~i~~~~~~~r~vV~~a~~~gip~P~ls~aL~y~~~~~s 430 (467)
T TIGR00873 387 APYFKDALKDAQSGWRRVVALAIEYGIPVPAFSAALSFYDGYRT 430 (467)
T ss_pred CHHHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 22222 2334556688999999999999999999998887655
|
This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason. |
| >TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.03 Score=49.05 Aligned_cols=56 Identities=9% Similarity=0.105 Sum_probs=41.4
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHH----HHc--------CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTL----AKE--------GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l----~~~--------g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||+.+|..|+.+|+ +|.++|++++..+.. .+. .++.+.+.++ +++||+||++++.|
T Consensus 12 vG~~iA~~la~~g~~~VvlvDi~~~l~~g~a~d~~~~~~~~~~~~~i~~t~d~~~-~~~aDiVIitag~p 80 (305)
T TIGR01763 12 VGATTAFRLAEKELADLVLLDVVEGIPQGKALDMYEASPVGGFDTKVTGTNNYAD-TANSDIVVITAGLP 80 (305)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCChhHHHHHhhhhhhhccCCCcEEEecCCHHH-hCCCCEEEEcCCCC
Confidence 89999999999887 899999976654311 111 1334567776 68999999999854
|
The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable. |
| >PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+) | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.022 Score=49.35 Aligned_cols=63 Identities=19% Similarity=0.198 Sum_probs=41.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++.-|.++|..|++.+.. +.++++.++++||||.++..+. .+. .+.+++|.+|
T Consensus 179 VGkPla~lL~~~~ATVtvchs~--------------T~nl~~~~~~ADIvv~AvGk~~----~i~-----~~~vk~gavV 235 (299)
T PLN02516 179 VGLPVSLLLLKADATVTVVHSR--------------TPDPESIVREADIVIAAAGQAM----MIK-----GDWIKPGAAV 235 (299)
T ss_pred chHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEcCCCcC----ccC-----HHHcCCCCEE
Confidence 4555555555555555555321 2467889999999999998753 211 2347899999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.++.
T Consensus 236 IDvGin 241 (299)
T PLN02516 236 IDVGTN 241 (299)
T ss_pred EEeecc
Confidence 998764
|
|
| >PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.013 Score=46.91 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=42.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-------cCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-------ALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adivi~~v~~ 57 (286)
+|..+++.|.+.||+|++..|++++.+. ..++++ .++..++++++|+||.+++.
T Consensus 10 vG~~l~~~L~~~~~~V~~~~R~~~~~~~--~~~~~~~~~d~~d~~~~~~al~~~d~vi~~~~~ 70 (183)
T PF13460_consen 10 VGRALAKQLLRRGHEVTALVRSPSKAED--SPGVEIIQGDLFDPDSVKAALKGADAVIHAAGP 70 (183)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSGGGHHH--CTTEEEEESCTTCHHHHHHHHTTSSEEEECCHS
T ss_pred HHHHHHHHHHHCCCEEEEEecCchhccc--ccccccceeeehhhhhhhhhhhhcchhhhhhhh
Confidence 6899999999999999999999998876 333221 12456777899999999974
|
... |
| >PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.027 Score=48.42 Aligned_cols=64 Identities=11% Similarity=0.200 Sum_probs=41.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++.-|.++|..|++.+.. +.++++..++||+||++++-+.-+. .+.+++|.+|
T Consensus 171 VGkPla~lL~~~~atVt~chs~--------------T~~l~~~~~~ADIvIsAvGk~~~i~---------~~~ik~gavV 227 (284)
T PRK14177 171 LGKPMAMLLTEMNATVTLCHSK--------------TQNLPSIVRQADIIVGAVGKPEFIK---------ADWISEGAVL 227 (284)
T ss_pred chHHHHHHHHHCCCEEEEeCCC--------------CCCHHHHHhhCCEEEEeCCCcCccC---------HHHcCCCCEE
Confidence 4455555555444455544421 2457788999999999999764322 2346799999
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
||.++..
T Consensus 228 IDvGin~ 234 (284)
T PRK14177 228 LDAGYNP 234 (284)
T ss_pred EEecCcc
Confidence 9998643
|
|
| >PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.027 Score=48.43 Aligned_cols=41 Identities=27% Similarity=0.298 Sum_probs=31.4
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
.++++.+++|||||++++.+.-+. .+.+++|.+|||.++..
T Consensus 192 ~~l~~~~~~ADIvI~AvG~~~~i~---------~~~vk~GavVIDvGin~ 232 (284)
T PRK14170 192 KDLPQVAKEADILVVATGLAKFVK---------KDYIKPGAIVIDVGMDR 232 (284)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEEccCcc
Confidence 457888999999999999764321 23467899999998653
|
|
| >PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.026 Score=48.91 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=30.8
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++.+++|||||++++-+.-+. ...+++|.+|||.++.
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~ik~gavVIDvGin 232 (297)
T PRK14186 193 QDLASITREADILVAAAGRPNLIG---------AEMVKPGAVVVDVGIH 232 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEeccc
Confidence 467888999999999999764221 2347799999998764
|
|
| >PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.025 Score=48.70 Aligned_cols=40 Identities=15% Similarity=0.327 Sum_probs=30.8
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||++++.+.-+. .+.+++|.+|||.++.
T Consensus 190 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~vk~GavVIDVGin 229 (287)
T PRK14173 190 QDLPAVTRRADVLVVAVGRPHLIT---------PEMVRPGAVVVDVGIN 229 (287)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEEccCc
Confidence 467888999999999999764321 2346799999998764
|
|
| >PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.025 Score=48.61 Aligned_cols=40 Identities=28% Similarity=0.258 Sum_probs=30.8
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||++++-+.-+. ...+++|.+|||.+..
T Consensus 192 ~nl~~~~~~ADIvIsAvGkp~~i~---------~~~vk~GavVIDvGin 231 (282)
T PRK14166 192 KDLSLYTRQADLIIVAAGCVNLLR---------SDMVKEGVIVVDVGIN 231 (282)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccC---------HHHcCCCCEEEEeccc
Confidence 457888999999999999765322 1246789999998754
|
|
| >COG4074 Mth H2-forming N5,N10-methylenetetrahydromethanopterin dehydrogenase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.21 Score=41.01 Aligned_cols=102 Identities=15% Similarity=0.233 Sum_probs=62.7
Q ss_pred CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCC
Q psy764 34 GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVS 112 (286)
Q Consensus 34 g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~ 112 (286)
|+.++++-+|+++++|+|++=+|....-..++.. +...+++|.+|.+.+|+......++-+.+.+....+-+ .|
T Consensus 126 g~~vttddreavedad~iitwlpkg~~qpdiikk---fiddipegaivthactipttkf~kifed~gredlnvtsyhp-- 200 (343)
T COG4074 126 GIVVTTDDREAVEDADMIITWLPKGGVQPDIIKK---FIDDIPEGAIVTHACTIPTTKFKKIFEDMGREDLNVTSYHP-- 200 (343)
T ss_pred eeEEecCcHhhhcCCCeEEEeccCCCCCccHHHH---HHhcCCCCceEeeecccchHHHHHHHHHhCccccceeccCC--
Confidence 5778888899999999999999965433334432 45568899999999998776666665554443332211 11
Q ss_pred CCHHhhhcCceEEEecC--CHhhHHHHHHHHH
Q psy764 113 GGTKAAQEATLTFMVGG--DKSSLEKAKPILK 142 (286)
Q Consensus 113 g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~ 142 (286)
| ....-+|+ +.++.| ++++++.+-++=+
T Consensus 201 g-~vpemkgq-vyiaegyaseeavn~lyelg~ 230 (343)
T COG4074 201 G-TVPEMKGQ-VYIAEGYASEEAVNALYELGE 230 (343)
T ss_pred C-CCccccCc-EEEecccccHHHHHHHHHHHH
Confidence 1 11123566 455555 4565555444433
|
|
| >PRK13940 glutamyl-tRNA reductase; Provisional | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.014 Score=53.27 Aligned_cols=59 Identities=14% Similarity=0.206 Sum_probs=47.4
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-C-Cc--ccCCHHHHhhcCcEEEEecCChhH
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-G-AN--MALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g-~~--~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
||...+.+|.+.|. +++++||+.++++.+.+. + .. ..+++.+.+.++|+||.|++.|.-
T Consensus 192 ~a~~va~~L~~~g~~~I~V~nRt~~ra~~La~~~~~~~~~~~~~l~~~l~~aDiVI~aT~a~~~ 255 (414)
T PRK13940 192 TGELLFRHVTALAPKQIMLANRTIEKAQKITSAFRNASAHYLSELPQLIKKADIIIAAVNVLEY 255 (414)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHhcCCeEecHHHHHHHhccCCEEEECcCCCCe
Confidence 68899999999995 799999999999888764 3 22 235567778899999999987643
|
|
| >PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.031 Score=47.95 Aligned_cols=40 Identities=23% Similarity=0.287 Sum_probs=30.5
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+.+++|||||++++.+.-+. .+.+++|.+|||.+..
T Consensus 193 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~ik~gavVIDvGin 232 (278)
T PRK14172 193 KNLKEVCKKADILVVAIGRPKFID---------EEYVKEGAIVIDVGTS 232 (278)
T ss_pred CCHHHHHhhCCEEEEcCCCcCccC---------HHHcCCCcEEEEeecc
Confidence 467888999999999999764321 2346799999998643
|
|
| >PRK09287 6-phosphogluconate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.045 Score=50.63 Aligned_cols=131 Identities=13% Similarity=0.110 Sum_probs=86.3
Q ss_pred hhHHHHHHHHHHhcC--CeEecCCcch-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHHc
Q psy764 132 SSLEKAKPILKCMGR--NIVHCGDSGN-----GQVAKLCNNMLLGVTMMGVAEAMNLGVK----L--GMNAKLLSDVINT 198 (286)
Q Consensus 132 ~~~~~~~~ll~~~g~--~v~~~g~~g~-----a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~----~--Gl~~~~~~~~~~~ 198 (286)
+++.+..+.++.... ...+.|+.+. ++.+|.++|.+.+..+.+++|.+.+.++ + ++|..++.++-+.
T Consensus 272 AvfaR~~S~~k~~r~~~~~~~~g~~~~~~~~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~~~w~ldl~~ia~iWr~ 351 (459)
T PRK09287 272 AVFARYLSSLKDQRVAASKVLSGPAAKFEGDKAEFIEDVRQALYASKIVSYAQGFALLRAASEEYGWDLDLGEIARIWRG 351 (459)
T ss_pred HHHHHhccccHHHHHHhhcccCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHhCC
Confidence 344555555544321 1234565443 8899999999999999999999999987 4 5788999998887
Q ss_pred cC-CCcccccccCCC----CCccccCCCCCCCCCCcc--chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 199 SS-GRCWSSEVYNPV----PGVLSNVPASNNYNGGFK--ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 199 ~~-~~s~~~~~~~~~----~~~~~~~~~~~~~~~~f~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
+. -+||+++..... |++ .+.+ +++.|. +......++.+...+-+.|+|.|.+.++...|+.-..
T Consensus 352 GcIIRs~lL~~i~~a~~~~~~l-~nl~----~~~~~~~~i~~~~~~~R~vV~~a~~~gip~P~ls~aL~y~d~~~~ 422 (459)
T PRK09287 352 GCIIRAQFLQKITDAYEANPDL-ANLL----LDPYFKDILEEYQDALRRVVALAVQAGIPVPAFSSALSYYDSYRT 422 (459)
T ss_pred CCEEeHHHHHHHHHHHHhCCCc-hhhc----CCHHHHHHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhc
Confidence 63 566665442221 110 0000 122222 2333455688999999999999999999977765543
|
|
| >TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.048 Score=47.16 Aligned_cols=99 Identities=15% Similarity=0.074 Sum_probs=65.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
+|..+-.+|...|++ .+|..++.+ .++ -.|.....|+.|+-+. .|+.++++|. ..+.+++.+ ... ..-+
T Consensus 18 ~~~~~~~~~~~~g~~-~v~~V~p~~~~~~--v~G~~~y~sv~dlp~~~~~Dlavi~vpa-~~v~~~l~e---~~~-~Gvk 89 (286)
T TIGR01019 18 QGSFHTEQMLAYGTN-IVGGVTPGKGGTT--VLGLPVFDSVKEAVEETGANASVIFVPA-PFAADAIFE---AID-AGIE 89 (286)
T ss_pred HHHHHHHHHHhCCCC-EEEEECCCCCcce--ecCeeccCCHHHHhhccCCCEEEEecCH-HHHHHHHHH---HHH-CCCC
Confidence 467777888888998 667666652 111 1488999999999886 7999999995 566666553 222 1122
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
..||-.+.......+++.+..+++|++++-
T Consensus 90 ~avIis~Gf~e~~~~~l~~~a~~~girilG 119 (286)
T TIGR01019 90 LIVCITEGIPVHDMLKVKRYMEESGTRLIG 119 (286)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHcCCEEEC
Confidence 344444444333346777888888888773
|
ATP citrate lyases appear to form an outgroup. |
| >PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.026 Score=48.56 Aligned_cols=63 Identities=17% Similarity=0.181 Sum_probs=42.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++.-|.++|..|++.+.. +.++.+.+++||+||.+++.+.- +. .+.+++|.+|
T Consensus 170 VG~Pla~lL~~~~atVt~chs~--------------t~~l~~~~~~ADIvI~AvG~p~~----i~-----~~~ik~gavV 226 (284)
T PRK14190 170 VGKPVGQLLLNENATVTYCHSK--------------TKNLAELTKQADILIVAVGKPKL----IT-----ADMVKEGAVV 226 (284)
T ss_pred cHHHHHHHHHHCCCEEEEEeCC--------------chhHHHHHHhCCEEEEecCCCCc----CC-----HHHcCCCCEE
Confidence 4555555555555555555321 23577889999999999987642 21 2346799999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.+..
T Consensus 227 IDvGi~ 232 (284)
T PRK14190 227 IDVGVN 232 (284)
T ss_pred EEeecc
Confidence 998754
|
|
| >PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.032 Score=47.99 Aligned_cols=40 Identities=23% Similarity=0.309 Sum_probs=31.1
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++.+++||+||++++.+.-+. ...+++|.+|||.+..
T Consensus 195 ~~l~~~~k~ADIvV~AvGkp~~i~---------~~~ik~GavVIDvGin 234 (284)
T PRK14193 195 RDLAAHTRRADIIVAAAGVAHLVT---------ADMVKPGAAVLDVGVS 234 (284)
T ss_pred CCHHHHHHhCCEEEEecCCcCccC---------HHHcCCCCEEEEcccc
Confidence 468889999999999999764211 2347899999998764
|
|
| >PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.032 Score=47.95 Aligned_cols=40 Identities=23% Similarity=0.353 Sum_probs=30.8
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||++++-+.-+. .+.+++|.+|||.+..
T Consensus 191 ~~l~~~~~~ADIvI~AvG~p~~i~---------~~~vk~GavVIDvGin 230 (282)
T PRK14169 191 RNLKQLTKEADILVVAVGVPHFIG---------ADAVKPGAVVIDVGIS 230 (282)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCcEEEEeecc
Confidence 457888999999999999765322 2347799999998764
|
|
| >PRK05678 succinyl-CoA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.044 Score=47.51 Aligned_cols=99 Identities=14% Similarity=0.085 Sum_probs=65.3
Q ss_pred ccHHHHHHHHhCCCcEEEE--cCC--chHHHHHHHcCCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQGHDVIVY--DKN--TDASQTLAKEGANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~--dr~--~~~~~~l~~~g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+|..+.++|.+.||+ .+| |+. .+.+ .|.....|++|+-+. .|+.++++|. ..+.+++.+ ..+ .
T Consensus 20 ~g~~~l~~l~~~g~~-~v~pVnp~~~~~~v-----~G~~~y~sv~dlp~~~~~DlAvi~vp~-~~v~~~l~e---~~~-~ 88 (291)
T PRK05678 20 QGTFHTEQMLAYGTN-IVGGVTPGKGGTTV-----LGLPVFNTVAEAVEATGANASVIYVPP-PFAADAILE---AID-A 88 (291)
T ss_pred HHHHHHHHHHHCCCC-EEEEECCCCCCCeE-----eCeeccCCHHHHhhccCCCEEEEEcCH-HHHHHHHHH---HHH-C
Confidence 477788899998997 554 544 2221 488999999999987 8999999995 456665543 222 1
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCC
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVS 112 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~ 112 (286)
.-+..+|-.+.......+++.+...++|++++- |..
T Consensus 89 gvk~avI~s~Gf~~~~~~~l~~~a~~~girvlG-PNc 124 (291)
T PRK05678 89 GIDLIVCITEGIPVLDMLEVKAYLERKKTRLIG-PNC 124 (291)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEEC-CCC
Confidence 122344544444443345788888888888773 443
|
|
| >PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.032 Score=48.18 Aligned_cols=40 Identities=25% Similarity=0.295 Sum_probs=30.6
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+.+++|||||++++.+.-+. ...+++|.+|||.++.
T Consensus 195 ~~l~~~~~~ADIvVsAvGkp~~i~---------~~~ik~gaiVIDVGin 234 (294)
T PRK14187 195 RDLADYCSKADILVAAVGIPNFVK---------YSWIKKGAIVIDVGIN 234 (294)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEeccc
Confidence 457888999999999999875322 2346789999998754
|
|
| >PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.031 Score=48.01 Aligned_cols=40 Identities=20% Similarity=0.273 Sum_probs=30.4
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+..++||+||++++.+.-+. ...+++|.+|||.++.
T Consensus 193 ~dl~~~~k~ADIvIsAvGkp~~i~---------~~~vk~gavVIDvGin 232 (282)
T PRK14180 193 TDLKSHTTKADILIVAVGKPNFIT---------ADMVKEGAVVIDVGIN 232 (282)
T ss_pred CCHHHHhhhcCEEEEccCCcCcCC---------HHHcCCCcEEEEeccc
Confidence 467788999999999999764322 2346789999998753
|
|
| >TIGR01921 DAP-DH diaminopimelate dehydrogenase | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.086 Score=46.33 Aligned_cols=76 Identities=9% Similarity=0.075 Sum_probs=52.2
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCc-hHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNT-DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~-~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||...+..+.+. +.++. +|||++ ++.. ...+.....+..++..+.|+|++|.|+....+.+. +.+..|
T Consensus 14 IGr~~a~al~~~pd~ELVgV~dr~~~~~~~--~~~~v~~~~d~~e~l~~iDVViIctPs~th~~~~~-------~~L~aG 84 (324)
T TIGR01921 14 LGRSVEKAIQQQPDMELVGVFSRRGAETLD--TETPVYAVADDEKHLDDVDVLILCMGSATDIPEQA-------PYFAQF 84 (324)
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCcHHHHh--hcCCccccCCHHHhccCCCEEEEcCCCccCHHHHH-------HHHHcC
Confidence 688888888765 67766 579985 4332 22344555677777789999999999866554443 335678
Q ss_pred CEEEEcCC
Q psy764 79 VIVIDSST 86 (286)
Q Consensus 79 ~ivid~st 86 (286)
.-+|++..
T Consensus 85 ~NVV~s~~ 92 (324)
T TIGR01921 85 ANTVDSFD 92 (324)
T ss_pred CCEEECCC
Confidence 88887653
|
This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized. |
| >PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.60 E-value=0.028 Score=48.20 Aligned_cols=65 Identities=22% Similarity=0.291 Sum_probs=40.3
Q ss_pred CCcEEEEcCCchHHHH----HHHcCCcc------cCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEE
Q psy764 14 GHDVIVYDKNTDASQT----LAKEGANM------ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVID 83 (286)
Q Consensus 14 G~~V~~~dr~~~~~~~----l~~~g~~~------~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid 83 (286)
|.+|.+.+|+...-.. +...|+++ +.++.+.+++||+||.+++.+.- +. ...+++|.+|||
T Consensus 152 Gk~V~ViGrs~~vGrpla~lL~~~~atVtv~hs~t~~L~~~~~~ADIvI~Avgk~~l----v~-----~~~vk~GavVID 222 (279)
T PRK14178 152 GKRAVVVGRSIDVGRPMAALLLNADATVTICHSKTENLKAELRQADILVSAAGKAGF----IT-----PDMVKPGATVID 222 (279)
T ss_pred CCEEEEECCCccccHHHHHHHHhCCCeeEEEecChhHHHHHHhhCCEEEECCCcccc----cC-----HHHcCCCcEEEE
Confidence 4466666666443333 12234322 23578889999999999985422 21 123689999999
Q ss_pred cCCC
Q psy764 84 SSTV 87 (286)
Q Consensus 84 ~st~ 87 (286)
.+..
T Consensus 223 Vgi~ 226 (279)
T PRK14178 223 VGIN 226 (279)
T ss_pred eecc
Confidence 8754
|
|
| >TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.051 Score=47.04 Aligned_cols=105 Identities=18% Similarity=0.168 Sum_probs=62.5
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-C----CcccC---CHHHHhhcCcEEEEecCChhHHHH-HhcCC-cc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-G----ANMAL---SLSTLASGAEFIISMLPASQDVLD-AYDGS-DG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g----~~~~~---s~~e~~~~adivi~~v~~~~~~~~-v~~~~-~~ 70 (286)
+|++++..|.+.|. +|+++||++++++.+.+. + +.... +..+...++|+||-|+|....... .+... ..
T Consensus 136 aarai~~aL~~~G~~~i~I~nRt~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~DiVInaTp~g~~~~~~~l~~~~~~ 215 (282)
T TIGR01809 136 TSRAAVYALASLGVTDITVINRNPDKLSRLVDLGVQVGVITRLEGDSGGLAIEKAAEVLVSTVPADVPADYVDLFATVPF 215 (282)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHhhhcCcceeccchhhhhhcccCCCEEEECCCCCCCCCHHHhhhhhhh
Confidence 46788899999997 699999999999888653 1 11122 223455789999999986432111 00000 00
Q ss_pred c-cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 71 I-LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 71 l-~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+ .....++.+++|+--. |..+ .+.+..++.|+..++
T Consensus 216 ~~~~~~~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~ 252 (282)
T TIGR01809 216 LLLKRKSSEGIFLDAAYD-PWPT-PLVAIVSAAGWRVIS 252 (282)
T ss_pred hccccCCCCcEEEEEeeC-CCCC-HHHHHHHHCCCEEEC
Confidence 0 0123456788998643 4333 234445567766554
|
This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway. |
| >PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.037 Score=47.65 Aligned_cols=63 Identities=13% Similarity=0.145 Sum_probs=41.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++.-|.+.|..|++.+. .+.++.+.++++|+||.++.-|.-+. ...+++|.+|
T Consensus 176 VGkPla~lL~~~~atVtv~hs--------------~T~~l~~~~~~ADIvv~AvG~p~~i~---------~~~vk~gavV 232 (287)
T PRK14176 176 VGKPMAAMLLNRNATVSVCHV--------------FTDDLKKYTLDADILVVATGVKHLIK---------ADMVKEGAVI 232 (287)
T ss_pred cHHHHHHHHHHCCCEEEEEec--------------cCCCHHHHHhhCCEEEEccCCccccC---------HHHcCCCcEE
Confidence 455555555555555555542 12467888999999999998764221 1246789999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.++.
T Consensus 233 IDvGin 238 (287)
T PRK14176 233 FDVGIT 238 (287)
T ss_pred EEeccc
Confidence 998764
|
|
| >PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.076 Score=53.71 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=68.1
Q ss_pred ccHHHHHHHHhCC-Cc-------------EEEEcCCchHHHHHHHc--C---Ccc-cCCHHHHh---hcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG-HD-------------VIVYDKNTDASQTLAKE--G---ANM-ALSLSTLA---SGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~-------------V~~~dr~~~~~~~l~~~--g---~~~-~~s~~e~~---~~adivi~~v~~~ 58 (286)
||...+..|++.. ++ |.+.|+++++++.+.+. + +.. ..+.+++. +++|+|++|+|..
T Consensus 580 VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~~DaVIsalP~~ 659 (1042)
T PLN02819 580 VCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQVDVVISLLPAS 659 (1042)
T ss_pred HHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcCCCEEEECCCch
Confidence 7889999998753 33 88999999998887653 3 233 44555554 6899999999975
Q ss_pred hHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 59 QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 59 ~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
-. ..+. ..++..|+-+++.| ......+++.+..++.|+.++-
T Consensus 660 ~H-~~VA------kaAieaGkHvv~ek-y~~~e~~~L~e~Ak~AGV~~m~ 701 (1042)
T PLN02819 660 CH-AVVA------KACIELKKHLVTAS-YVSEEMSALDSKAKEAGITILC 701 (1042)
T ss_pred hh-HHHH------HHHHHcCCCEEECc-CCHHHHHHHHHHHHHcCCEEEE
Confidence 33 2222 23456677777776 4455667777888888876653
|
|
| >PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.044 Score=47.08 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=30.2
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||++++-+.-+. .+.+++|.+|||.+..
T Consensus 192 ~nl~~~~~~ADIvI~AvGk~~~i~---------~~~ik~gaiVIDvGin 231 (282)
T PRK14182 192 ADLAGEVGRADILVAAIGKAELVK---------GAWVKEGAVVIDVGMN 231 (282)
T ss_pred CCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEEeece
Confidence 457788999999999999754221 2346799999998754
|
|
| >TIGR00036 dapB dihydrodipicolinate reductase | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.13 Score=44.04 Aligned_cols=104 Identities=17% Similarity=0.271 Sum_probs=65.3
Q ss_pred ccHHHHHHHHh-CCCcEE-EEcCC-chH----HHHHHH---cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQF-QGHDVI-VYDKN-TDA----SQTLAK---EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~-~G~~V~-~~dr~-~~~----~~~l~~---~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||..+++.+.+ .++++. ++||. +++ ...+.. .|+.++++++++...+|+||.|.+. ....+++.
T Consensus 13 MG~~i~~~i~~~~~~elvav~d~~~~~~~~~~~~~~~~~~~~gv~~~~d~~~l~~~~DvVIdfT~p-~~~~~~~~----- 86 (266)
T TIGR00036 13 MGRELIKAALAAEGLQLVAAFERHGSSLQGTDAGELAGIGKVGVPVTDDLEAVETDPDVLIDFTTP-EGVLNHLK----- 86 (266)
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccCCCHHHhcCcCcCCceeeCCHHHhcCCCCEEEECCCh-HHHHHHHH-----
Confidence 78889998875 467654 56854 322 112211 3566778888886679999999974 55555543
Q ss_pred cccCCCCCE-EEEcCCCCchHHHHHHHHHHhcCCceEeccCC
Q psy764 72 LKHAKPGVI-VIDSSTVDPQVPQTLSNLAREKQITFLDAPVS 112 (286)
Q Consensus 72 ~~~l~~g~i-vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~ 112 (286)
..+..|+- |+-++..++...+++.+..++.|+.++-+|.+
T Consensus 87 -~al~~g~~vVigttg~~~e~~~~l~~aA~~~g~~v~~a~Nf 127 (266)
T TIGR00036 87 -FALEHGVRLVVGTTGFSEEDKQELADLAEKAGIAAVIAPNF 127 (266)
T ss_pred -HHHHCCCCEEEECCCCCHHHHHHHHHHHhcCCccEEEECcc
Confidence 23455654 44555556667777777766666666655544
|
|
| >PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.043 Score=48.34 Aligned_cols=40 Identities=25% Similarity=0.293 Sum_probs=30.9
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+..++|||||.+++-+.-+. .+.+++|.+|||.+..
T Consensus 249 ~nl~~~~~~ADIvIsAvGkp~~v~---------~d~vk~GavVIDVGin 288 (345)
T PLN02897 249 KDPEQITRKADIVIAAAGIPNLVR---------GSWLKPGAVVIDVGTT 288 (345)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEcccc
Confidence 467888999999999999764322 2346799999998764
|
|
| >PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.46 E-value=0.045 Score=47.20 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=30.5
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||+++.-+.-+. ...+++|.+|||++..
T Consensus 194 ~~L~~~~~~ADIvV~AvGkp~~i~---------~~~vk~GavVIDvGin 233 (288)
T PRK14171 194 HNLSSITSKADIVVAAIGSPLKLT---------AEYFNPESIVIDVGIN 233 (288)
T ss_pred CCHHHHHhhCCEEEEccCCCCccC---------HHHcCCCCEEEEeecc
Confidence 457888999999999999764222 2346799999998753
|
|
| >PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.044 Score=47.05 Aligned_cols=40 Identities=23% Similarity=0.218 Sum_probs=30.5
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+.+++||+||+++..+.-+. .+.+++|.+|||.++.
T Consensus 192 ~~l~~~~~~ADIvV~AvGkp~~i~---------~~~vk~gavvIDvGin 231 (281)
T PRK14183 192 KDLKAHTKKADIVIVGVGKPNLIT---------EDMVKEGAIVIDIGIN 231 (281)
T ss_pred cCHHHHHhhCCEEEEecCcccccC---------HHHcCCCcEEEEeecc
Confidence 357788999999999999764322 2346789999998764
|
|
| >PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.03 Score=48.19 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=40.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.++|.-|.++|..|++.+.. +.++.+.+++||+||++++.+.-+. ...+++|.+|
T Consensus 169 VG~Pla~lL~~~gAtVtv~hs~--------------t~~l~~~~~~ADIvV~AvG~p~~i~---------~~~vk~GavV 225 (285)
T PRK14191 169 VGKPLAMLMLNAGASVSVCHIL--------------TKDLSFYTQNADIVCVGVGKPDLIK---------ASMVKKGAVV 225 (285)
T ss_pred hHHHHHHHHHHCCCEEEEEeCC--------------cHHHHHHHHhCCEEEEecCCCCcCC---------HHHcCCCcEE
Confidence 4555555555555555554321 1235678899999999998764321 1246799999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.+..
T Consensus 226 IDvGi~ 231 (285)
T PRK14191 226 VDIGIN 231 (285)
T ss_pred EEeecc
Confidence 998754
|
|
| >KOG2741|consensus | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.15 Score=44.79 Aligned_cols=90 Identities=13% Similarity=0.237 Sum_probs=67.9
Q ss_pred CCCcEE-EEcCCchHHHHHHHc-C---CcccCCHHHHhhcC--cEEEEecCChhHHHHHhcCCccccccCCCCC-EEEEc
Q psy764 13 QGHDVI-VYDKNTDASQTLAKE-G---ANMALSLSTLASGA--EFIISMLPASQDVLDAYDGSDGILKHAKPGV-IVIDS 84 (286)
Q Consensus 13 ~G~~V~-~~dr~~~~~~~l~~~-g---~~~~~s~~e~~~~a--divi~~v~~~~~~~~v~~~~~~l~~~l~~g~-ivid~ 84 (286)
++|.|. +.+|+.+++..+++. + .++.+|.+|++++. |+|.+..|+++..+-+.. + +..|| ++++.
T Consensus 31 s~~~Ivava~~s~~~A~~fAq~~~~~~~k~y~syEeLakd~~vDvVyi~~~~~qH~evv~l----~---l~~~K~VL~EK 103 (351)
T KOG2741|consen 31 SNHQIVAVADPSLERAKEFAQRHNIPNPKAYGSYEELAKDPEVDVVYISTPNPQHYEVVML----A---LNKGKHVLCEK 103 (351)
T ss_pred cCcEEEEEecccHHHHHHHHHhcCCCCCccccCHHHHhcCCCcCEEEeCCCCccHHHHHHH----H---HHcCCcEEecc
Confidence 467654 569999999999765 4 47889999999865 999999999988777764 2 22333 55553
Q ss_pred -CCCCchHHHHHHHHHHhcCCceEec
Q psy764 85 -STVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 85 -st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
-.....+.+++.+.++.+|+.++++
T Consensus 104 Pla~n~~e~~~iveaA~~rgv~~meg 129 (351)
T KOG2741|consen 104 PLAMNVAEAEEIVEAAEARGVFFMEG 129 (351)
T ss_pred cccCCHHHHHHHHHHHHHcCcEEEee
Confidence 2456778888999999999888875
|
|
| >PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.048 Score=48.29 Aligned_cols=40 Identities=28% Similarity=0.312 Sum_probs=30.7
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+.+++|||||.+++-+.-+. .+.+++|.+|||.+..
T Consensus 266 ~nl~~~~r~ADIVIsAvGkp~~i~---------~d~vK~GAvVIDVGIn 305 (364)
T PLN02616 266 KNPEEITREADIIISAVGQPNMVR---------GSWIKPGAVVIDVGIN 305 (364)
T ss_pred CCHHHHHhhCCEEEEcCCCcCcCC---------HHHcCCCCEEEecccc
Confidence 467888999999999999764322 2346799999998753
|
|
| >COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.13 Score=43.02 Aligned_cols=63 Identities=13% Similarity=0.211 Sum_probs=45.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH--cCCcc---cC----CHHHH-hhcCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK--EGANM---AL----SLSTL-ASGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~--~g~~~---~~----s~~e~-~~~adivi~~v~~~~~~~~v~ 65 (286)
+|..+|+.|.+.||+|.+.|++++++++..+ ....+ .. .++++ +.++|+++.+..++ .+..++
T Consensus 11 vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva~t~~d-~~N~i~ 83 (225)
T COG0569 11 VGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVAATGND-EVNSVL 83 (225)
T ss_pred HHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEEeeCCC-HHHHHH
Confidence 7999999999999999999999999988544 33211 11 23344 56899999988864 444444
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.064 Score=49.58 Aligned_cols=58 Identities=17% Similarity=0.176 Sum_probs=44.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-cCCccc-------CCHHHH-hhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-EGANMA-------LSLSTL-ASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-~g~~~~-------~s~~e~-~~~adivi~~v~~~~ 59 (286)
+|..++..|.+.|++|.++|+++++.+.+.+ .|..+. ..+.++ ++++|.||++++++.
T Consensus 11 ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~~~~~~ 77 (453)
T PRK09496 11 VGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAVTDSDE 77 (453)
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEecCChH
Confidence 6899999999999999999999999988865 443221 123344 678999999999754
|
|
| >PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.02 Score=42.87 Aligned_cols=80 Identities=18% Similarity=0.135 Sum_probs=49.2
Q ss_pred ccHHHHHHHHhCCC-c-EEEEcCCchHHHHHHHc--------CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQGH-D-VIVYDKNTDASQTLAKE--------GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~-V~~~dr~~~~~~~l~~~--------g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
+|+.+.+.|.++-+ + +.++.++.+.-+.+... ...+.+...+.+.++|+||+|+|+. ...+....
T Consensus 11 vG~~l~~lL~~hp~~e~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dvvf~a~~~~-~~~~~~~~---- 85 (121)
T PF01118_consen 11 VGRELLRLLAEHPDFELVALVSSSRSAGKPLSEVFPHPKGFEDLSVEDADPEELSDVDVVFLALPHG-ASKELAPK---- 85 (121)
T ss_dssp HHHHHHHHHHHTSTEEEEEEEESTTTTTSBHHHTTGGGTTTEEEBEEETSGHHHTTESEEEE-SCHH-HHHHHHHH----
T ss_pred HHHHHHHHHhcCCCccEEEeeeeccccCCeeehhccccccccceeEeecchhHhhcCCEEEecCchh-HHHHHHHH----
Confidence 68899999988543 4 55566665332223222 1233333344558999999999964 45555432
Q ss_pred cccCCCCCEEEEcCCCC
Q psy764 72 LKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~ 88 (286)
.+.+|..|||.|+..
T Consensus 86 --~~~~g~~ViD~s~~~ 100 (121)
T PF01118_consen 86 --LLKAGIKVIDLSGDF 100 (121)
T ss_dssp --HHHTTSEEEESSSTT
T ss_pred --HhhCCcEEEeCCHHH
Confidence 256788999998754
|
This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C .... |
| >cd05297 GH4_alpha_glucosidase_galactosidase Glycoside Hydrolases Family 4; Alpha-glucosidases and alpha-galactosidases | Back alignment and domain information |
|---|
Probab=95.22 E-value=0.033 Score=51.14 Aligned_cols=47 Identities=15% Similarity=0.303 Sum_probs=36.8
Q ss_pred HhCCCcEEEEcCCchHHHHHHHc------------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 11 QFQGHDVIVYDKNTDASQTLAKE------------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 11 ~~~G~~V~~~dr~~~~~~~l~~~------------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
..+|++|.+||+++++.+..... .+..+.++.+++++||+||.+++.
T Consensus 26 ~~~g~eV~L~Did~e~l~~~~~~~~~~~~~~~~~~~I~~ttD~~eal~~AD~Vi~ai~~ 84 (423)
T cd05297 26 ELSGSTIALMDIDEERLETVEILAKKIVEELGAPLKIEATTDRREALDGADFVINTIQV 84 (423)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhcCCCEEEEeeEe
Confidence 45578999999999887655331 234577889999999999999984
|
linked to 3D####ucture |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.063 Score=50.14 Aligned_cols=78 Identities=18% Similarity=0.304 Sum_probs=54.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-cCC--------------------------HHHHhhcCcEEEEe
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-ALS--------------------------LSTLASGAEFIISM 54 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~s--------------------------~~e~~~~adivi~~ 54 (286)
+|...+..+...|..|+++|+++++.+.+...|... .-+ ..+.++++|+||.|
T Consensus 175 iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lGa~~v~v~~~e~g~~~~gYa~~~s~~~~~~~~~~~~e~~~~~DIVI~T 254 (511)
T TIGR00561 175 AGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEGGSGDGYAKVMSEEFIAAEMELFAAQAKEVDIIITT 254 (511)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccccceeecCHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 466777777788989999999999988887777554 111 33456789999999
Q ss_pred c-----CChh-HHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 55 L-----PASQ-DVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 55 v-----~~~~-~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
+ |.|. ..++ ..+.+++|.+|||.+.
T Consensus 255 alipG~~aP~Lit~e-------mv~~MKpGsvIVDlA~ 285 (511)
T TIGR00561 255 ALIPGKPAPKLITEE-------MVDSMKAGSVIVDLAA 285 (511)
T ss_pred cccCCCCCCeeehHH-------HHhhCCCCCEEEEeee
Confidence 9 4331 1122 3445788999999875
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.054 Score=37.78 Aligned_cols=52 Identities=23% Similarity=0.414 Sum_probs=37.6
Q ss_pred ccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+|..++..|.+. +.+|.+||| |++|.|++.+..+.+- ....+.++.+
T Consensus 34 ~g~~~a~~l~~~~~~~v~v~~r--------------------------di~i~~~~~~~~~~~~------~~~~~~~~~~ 81 (86)
T cd05191 34 VGKGIAKLLADEGGKKVVLCDR--------------------------DILVTATPAGVPVLEE------ATAKINEGAV 81 (86)
T ss_pred HHHHHHHHHHHcCCCEEEEEcC--------------------------CEEEEcCCCCCCchHH------HHHhcCCCCE
Confidence 577888888887 568999988 9999999866544331 1223567889
Q ss_pred EEEcC
Q psy764 81 VIDSS 85 (286)
Q Consensus 81 vid~s 85 (286)
|+|++
T Consensus 82 v~~~a 86 (86)
T cd05191 82 VIDLA 86 (86)
T ss_pred EEecC
Confidence 99874
|
Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al |
| >PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.062 Score=46.32 Aligned_cols=40 Identities=15% Similarity=0.206 Sum_probs=30.7
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++.+++|||||++++.+.-+. .+.+++|.+|||.+..
T Consensus 192 ~~l~~~~~~ADIvV~AvG~p~~i~---------~~~ik~GavVIDvGin 231 (287)
T PRK14181 192 ENLTEILKTADIIIAAIGVPLFIK---------EEMIAEKAVIVDVGTS 231 (287)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEeccc
Confidence 468888999999999999764221 2347799999998754
|
|
| >KOG0068|consensus | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.12 Score=45.06 Aligned_cols=95 Identities=19% Similarity=0.197 Sum_probs=75.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcC-CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK-NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||+-.|.++..-|..|..||. .+. +...+.|++.. +.+|+...||+|-+-+|-..+.+.++.. ..+..+++|..
T Consensus 157 IGseVA~r~k~~gm~vI~~dpi~~~--~~~~a~gvq~v-sl~Eil~~ADFitlH~PLtP~T~~lin~--~tfA~mKkGVr 231 (406)
T KOG0068|consen 157 IGSEVAVRAKAMGMHVIGYDPITPM--ALAEAFGVQLV-SLEEILPKADFITLHVPLTPSTEKLLND--ETFAKMKKGVR 231 (406)
T ss_pred chHHHHHHHHhcCceEEeecCCCch--HHHHhccceee-eHHHHHhhcCEEEEccCCCcchhhccCH--HHHHHhhCCcE
Confidence 899999999988989999974 443 34455677764 7999999999999999987788888875 34566899999
Q ss_pred EEEcCCCCchHHHHHHHHHHh
Q psy764 81 VIDSSTVDPQVPQTLSNLARE 101 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~ 101 (286)
||++|-...-....+.+.+..
T Consensus 232 iIN~aRGGvVDe~ALv~Al~s 252 (406)
T KOG0068|consen 232 IINVARGGVVDEPALVRALDS 252 (406)
T ss_pred EEEecCCceechHHHHHHHhc
Confidence 999998777666676666544
|
|
| >PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.072 Score=46.17 Aligned_cols=40 Identities=25% Similarity=0.268 Sum_probs=30.4
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++.+++|||||+++.-+.-+. .+.+++|.+|||.+..
T Consensus 200 ~~l~~~~~~ADIvVsAvGkp~~i~---------~~~ik~gavVIDvGin 239 (297)
T PRK14168 200 KNLARHCQRADILIVAAGVPNLVK---------PEWIKPGATVIDVGVN 239 (297)
T ss_pred cCHHHHHhhCCEEEEecCCcCccC---------HHHcCCCCEEEecCCC
Confidence 357888999999999998764211 2347799999998754
|
|
| >TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.12 Score=47.89 Aligned_cols=97 Identities=13% Similarity=0.134 Sum_probs=63.3
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|..+.++|.+.|| +|+..|.+.+. -.|..+..+++|+-...|++++++|. +.+.+++.+ ..+ ..-..
T Consensus 22 ~g~~~~~~l~~~gf~g~v~~Vnp~~~~-----i~G~~~~~sl~~lp~~~Dlavi~vp~-~~~~~~l~e---~~~-~gv~~ 91 (447)
T TIGR02717 22 VGYAIMKNLIEGGYKGKIYPVNPKAGE-----ILGVKAYPSVLEIPDPVDLAVIVVPA-KYVPQVVEE---CGE-KGVKG 91 (447)
T ss_pred hHHHHHHHHHhCCCCCcEEEECCCCCc-----cCCccccCCHHHCCCCCCEEEEecCH-HHHHHHHHH---HHh-cCCCE
Confidence 57788899999998 57666665432 14889999999998889999999995 566666653 322 22234
Q ss_pred EEEEcCCCCc------hHHHHHHHHHHhcCCceEe
Q psy764 80 IVIDSSTVDP------QVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 80 ivid~st~~p------~~~~~~~~~~~~~g~~~~~ 108 (286)
+||-.+.... ...+++.+..++.|++++.
T Consensus 92 ~vi~s~gf~e~g~~g~~~~~~l~~~a~~~girvlG 126 (447)
T TIGR02717 92 AVVITAGFKEVGEEGAELEQELVEIARKYGMRLLG 126 (447)
T ss_pred EEEECCCccccCcchHHHHHHHHHHHHHcCCEEEe
Confidence 4443332221 1224566667777766553
|
Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff. |
| >PRK12548 shikimate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.11 Score=45.24 Aligned_cols=102 Identities=9% Similarity=0.094 Sum_probs=60.9
Q ss_pred ccHHHHHHHHhCCCc-EEEEcCCc---hHHHHHHHc----C--Ccc--c--C---CHHHHhhcCcEEEEecCChhHHHHH
Q psy764 2 ISTLKLFFLQFQGHD-VIVYDKNT---DASQTLAKE----G--ANM--A--L---SLSTLASGAEFIISMLPASQDVLDA 64 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-V~~~dr~~---~~~~~l~~~----g--~~~--~--~---s~~e~~~~adivi~~v~~~~~~~~v 64 (286)
+|.+++..|++.|.+ |+++||++ ++.+.+.+. + ... . + +..+.++.+|+||-|.|-.-. .-
T Consensus 137 agrAia~~La~~G~~~V~I~~R~~~~~~~a~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~DilINaTp~Gm~--~~ 214 (289)
T PRK12548 137 AATAIQVQCALDGAKEITIFNIKDDFYERAEQTAEKIKQEVPECIVNVYDLNDTEKLKAEIASSDILVNATLVGMK--PN 214 (289)
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCchHHHHHHHHHHHHhhcCCCceeEEechhhhhHHHhhhccCCEEEEeCCCCCC--CC
Confidence 478889999999986 99999997 666665431 1 111 1 1 223345678999999984321 00
Q ss_pred hcCCccc--cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 65 YDGSDGI--LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 65 ~~~~~~l--~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
... ..+ ...+.++.+|+|+--.... + .+.+..++.|+..++
T Consensus 215 ~~~-~~~~~~~~l~~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~ 257 (289)
T PRK12548 215 DGE-TNIKDTSVFRKDLVVADTVYNPKK-T-KLLEDAEAAGCKTVG 257 (289)
T ss_pred CCC-CCCCcHHhcCCCCEEEEecCCCCC-C-HHHHHHHHCCCeeeC
Confidence 000 001 1236678899998654433 3 334555677776665
|
|
| >PRK06223 malate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.084 Score=46.23 Aligned_cols=54 Identities=15% Similarity=0.239 Sum_probs=38.8
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHH----Hc----C--Cc--ccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLA----KE----G--AN--MALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~----~~----g--~~--~~~s~~e~~~~adivi~~v~ 56 (286)
||..+|..++..|+ +|.++|+++++.+... .. + .+ .+.+. +.+++||+||+++.
T Consensus 13 vG~~ia~~la~~~~~ev~L~D~~~~~~~~~~~dl~~~~~~~~~~~~i~~~~d~-~~~~~aDiVii~~~ 79 (307)
T PRK06223 13 VGATLAHLLALKELGDVVLFDIVEGVPQGKALDIAEAAPVEGFDTKITGTNDY-EDIAGSDVVVITAG 79 (307)
T ss_pred HHHHHHHHHHhCCCeEEEEEECCCchhHHHHHHHHhhhhhcCCCcEEEeCCCH-HHHCCCCEEEECCC
Confidence 79999999998876 9999999887653322 11 1 12 23455 55789999999974
|
|
| >PRK13303 L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.17 Score=43.34 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=65.8
Q ss_pred ccHHHHHHHHhC-CCcE-EEEcCC--chHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQ-GHDV-IVYDKN--TDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V-~~~dr~--~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||..+++.+.+. +.++ .++++. .++.......+...+++++++..+.|+|+.|.|.+ ...++.. ..+..
T Consensus 12 iG~~~~~~l~~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~DvVve~t~~~-~~~e~~~------~aL~a 84 (265)
T PRK13303 12 IGAAVLELLEHDPDLRVDWVIVPEHSIDAVRRALGEAVRVVSSVDALPQRPDLVVECAGHA-ALKEHVV------PILKA 84 (265)
T ss_pred HHHHHHHHHhhCCCceEEEEEEcCCCHHHHhhhhccCCeeeCCHHHhccCCCEEEECCCHH-HHHHHHH------HHHHc
Confidence 788888888765 4454 344443 33333322336777888988855699999999964 5555432 33556
Q ss_pred CCEEEEcCCC---CchHHHHHHHHHHhcCCc-eEeccCCCCHH
Q psy764 78 GVIVIDSSTV---DPQVPQTLSNLAREKQIT-FLDAPVSGGTK 116 (286)
Q Consensus 78 g~ivid~st~---~p~~~~~~~~~~~~~g~~-~~~~pv~g~~~ 116 (286)
|+-++..|+. .+....++.+..++.|.. |++....|+..
T Consensus 85 Gk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v~sga~gg~d 127 (265)
T PRK13303 85 GIDCAVISVGALADEALRERLEQAAEAGGARLHLLSGAIGGID 127 (265)
T ss_pred CCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEEeChHhhCHH
Confidence 7766655554 344556777777777754 44443444433
|
|
| >cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2 | Back alignment and domain information |
|---|
Probab=94.84 E-value=0.16 Score=42.47 Aligned_cols=97 Identities=18% Similarity=0.194 Sum_probs=58.9
Q ss_pred ccHHHHHHHHhCCC---cEEEEcCC----chHH-------HHHHHc-CC-cccCCHHHHhhcCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGH---DVIVYDKN----TDAS-------QTLAKE-GA-NMALSLSTLASGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~---~V~~~dr~----~~~~-------~~l~~~-g~-~~~~s~~e~~~~adivi~~v~~~~~~~~v~ 65 (286)
+|.+++..|.+.|. +|+++||+ .++. +.+.+. +. ....++.++++++|++|-+.|..-..+++
T Consensus 36 Ag~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~~~L~~~~~~la~~~~~~~~~~~l~~~l~~~dvlIgaT~~G~~~~~~- 114 (226)
T cd05311 36 AGIAIARLLLAAGAKPENIVVVDSKGVIYEGREDDLNPDKNEIAKETNPEKTGGTLKEALKGADVFIGVSRPGVVKKEM- 114 (226)
T ss_pred HHHHHHHHHHHcCcCcceEEEEeCCCccccccchhhhHHHHHHHHHhccCcccCCHHHHHhcCCEEEeCCCCCCCCHHH-
Confidence 57889999999996 59999999 4543 333322 11 11136778888999999998732111222
Q ss_pred cCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCc-eEe
Q psy764 66 DGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQIT-FLD 108 (286)
Q Consensus 66 ~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~-~~~ 108 (286)
.+.+.++.+|.+.++-.+ ..+.+...+.|.. +.+
T Consensus 115 ------l~~m~~~~ivf~lsnP~~---e~~~~~A~~~ga~i~a~ 149 (226)
T cd05311 115 ------IKKMAKDPIVFALANPVP---EIWPEEAKEAGADIVAT 149 (226)
T ss_pred ------HHhhCCCCEEEEeCCCCC---cCCHHHHHHcCCcEEEe
Confidence 233456778888884333 2244444555664 443
|
Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph |
| >cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.08 Score=45.31 Aligned_cols=54 Identities=13% Similarity=0.129 Sum_probs=41.1
Q ss_pred ccHHHHHHHHhCC----CcEEEEcCCchHHHHHHH-----------cCCcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQG----HDVIVYDKNTDASQTLAK-----------EGANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G----~~V~~~dr~~~~~~~l~~-----------~g~~~~~s~~e~~~~adivi~~v 55 (286)
||..++..|+..| .+|.++|+++++.+.... ..+..++++.+++++||+||++.
T Consensus 10 vG~~ia~~l~~~~~~~~~el~L~D~~~~~l~~~~~dl~~~~~~~~~~~i~~~~d~~~~~~~aDiVv~t~ 78 (263)
T cd00650 10 VGPALAFGLADGSVLLAIELVLYDIDEEKLKGVAMDLQDAVEPLADIKVSITDDPYEAFKDADVVIITA 78 (263)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEeCCcccchHHHHHHHHhhhhccCcEEEECCchHHHhCCCCEEEECC
Confidence 6889999999888 689999999876543322 12334566788999999999965
|
Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains |
| >PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.09 Score=45.47 Aligned_cols=40 Identities=30% Similarity=0.318 Sum_probs=30.9
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+.+++|||||++++.+.-+. .+.+++|.+|||.+..
T Consensus 196 ~nl~~~~~~ADIvIsAvGkp~~i~---------~~~vk~gavVIDvGin 235 (293)
T PRK14185 196 KNLKKECLEADIIIAALGQPEFVK---------ADMVKEGAVVIDVGTT 235 (293)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEecCc
Confidence 467888999999999999765322 2346799999998764
|
|
| >PF10728 DUF2520: Domain of unknown function (DUF2520); InterPro: IPR018931 This presumed domain is found C-terminal to a Rossmann-like domain suggesting that these proteins are oxidoreductases | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.47 Score=36.03 Aligned_cols=71 Identities=23% Similarity=0.276 Sum_probs=47.8
Q ss_pred EEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHH---HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HHHHH
Q psy764 124 TFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQV---AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKL----LSDVI 196 (286)
Q Consensus 124 ~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~---~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~----~~~~~ 196 (286)
++.+.||++..+.++.+++.+|.+++.+.+.....+ .=+++|+... .+..+..+.++.|+|.+. +..++
T Consensus 3 ~~~iEgd~~~~~~l~~l~~~lg~~~~~i~~~~r~~yHaAav~asNf~~~----L~~~a~~ll~~~gi~~~~a~~~L~PLi 78 (132)
T PF10728_consen 3 PFAIEGDEEALEVLQELAKELGGRPFEIDSEQRALYHAAAVFASNFLVA----LYALAAELLEQAGIDFEEALEALLPLI 78 (132)
T ss_dssp -EEEEESHHHHHHHHHHHHHTTSEEEE--GGGHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTT-SHHH--HHHHHHH
T ss_pred EEEEecCHHHHHHHHHHHHHhCCceEEeCHHhHHHHHHHHHHHHhhHHH----HHHHHHHHHHHcCCCchhHHHHHHHHH
Confidence 456667999999999999999999999875322221 2256777655 455677889999999954 55555
Q ss_pred Hc
Q psy764 197 NT 198 (286)
Q Consensus 197 ~~ 198 (286)
..
T Consensus 79 ~~ 80 (132)
T PF10728_consen 79 RE 80 (132)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
; PDB: 3D1L_A 2I76_A 3DFU_A. |
| >cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.055 Score=47.43 Aligned_cols=57 Identities=14% Similarity=0.188 Sum_probs=42.0
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHHc--------C--CcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAKE--------G--ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~--------g--~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
+|+++|..|+..| ++|.++||++++++.+... + ........+.+++||+||++...+
T Consensus 11 vG~~~a~~l~~~g~~~ei~l~D~~~~~~~~~a~dL~~~~~~~~~~~~i~~~~~~~l~~aDIVIitag~~ 79 (306)
T cd05291 11 VGSSFAYSLVNQGIADELVLIDINEEKAEGEALDLEDALAFLPSPVKIKAGDYSDCKDADIVVITAGAP 79 (306)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCcchhhHhHhhHHHHhhccCCCeEEEcCCHHHhCCCCEEEEccCCC
Confidence 7899999999999 6899999999887655431 1 122223334578999999999764
|
L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine |
| >COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.14 Score=44.26 Aligned_cols=102 Identities=23% Similarity=0.243 Sum_probs=63.5
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc----CCc-ccCCHHHH--hhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNTDASQTLAKE----GAN-MALSLSTL--ASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~----g~~-~~~s~~e~--~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
+.+.+..|++.|. +|+++||+.++++++.+. +.. ......+. ..++|+||=|+|-.-.-.. -...-. ...
T Consensus 138 arAv~~aL~~~g~~~i~V~NRt~~ra~~La~~~~~~~~~~~~~~~~~~~~~~~~dliINaTp~Gm~~~~-~~~~~~-~~~ 215 (283)
T COG0169 138 ARAVAFALAEAGAKRITVVNRTRERAEELADLFGELGAAVEAAALADLEGLEEADLLINATPVGMAGPE-GDSPVP-AEL 215 (283)
T ss_pred HHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhhhcccccccccccccccccccCEEEECCCCCCCCCC-CCCCCc-HHh
Confidence 4677888999995 799999999999888764 211 11222222 2268999999986533221 000000 234
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+.++.++.|+--.... + .+.++.+++|...+|
T Consensus 216 l~~~~~v~D~vY~P~~-T-plL~~A~~~G~~~id 247 (283)
T COG0169 216 LPKGAIVYDVVYNPLE-T-PLLREARAQGAKTID 247 (283)
T ss_pred cCcCCEEEEeccCCCC-C-HHHHHHHHcCCeEEC
Confidence 6788999998554433 3 334566777877666
|
|
| >PLN02353 probable UDP-glucose 6-dehydrogenase | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.19 Score=46.74 Aligned_cols=96 Identities=14% Similarity=0.029 Sum_probs=61.6
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHc----------------------CCcccCCHHHHhhcCcEEEEecCChhHH
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKE----------------------GANMALSLSTLASGAEFIISMLPASQDV 61 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----------------------g~~~~~s~~e~~~~adivi~~v~~~~~~ 61 (286)
..++..|.+.|.+|.+||.--+..+.-... ++..++++.++++++|+||+++.++ ..
T Consensus 347 ~~li~~L~~~G~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~vvi~t~~~-ef 425 (473)
T PLN02353 347 IDVCKGLLGDKAKLSIYDPQVTEEQIQRDLSMNKFDWDHPRHLQPMSPTAVKQVSVVWDAYEATKGAHGICILTEWD-EF 425 (473)
T ss_pred HHHHHHHHhCCCEEEEECCCCChHHHHHHhhcccccccccccccccccccccceeeeCCHHHHhcCCCEEEECCCCh-Hh
Confidence 467888999999999999764332111011 2355677789999999999999975 44
Q ss_pred HHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 62 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 62 ~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+..-. ..+.+.+.+..+|+|+-.+... +.+.+.|+.|..
T Consensus 426 ~~l~~--~~~~~~m~~~~~viD~rn~l~~------~~~~~~G~~y~~ 464 (473)
T PLN02353 426 KTLDY--QKIYDNMQKPAFVFDGRNVLDH------EKLREIGFIVYS 464 (473)
T ss_pred cccCH--HHHHHhccCCCEEEECCCCCCH------HHHHhCCcEEEE
Confidence 44311 1123334445589998777642 223355887765
|
|
| >PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.076 Score=39.33 Aligned_cols=98 Identities=17% Similarity=0.202 Sum_probs=61.7
Q ss_pred ccHHHHHHHHhC----CCcE-EEEcCC--chHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ----GHDV-IVYDKN--TDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~----G~~V-~~~dr~--~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
||+.++..|.++ +++| .++||+ .+....-...+.....++.++++ ..|+||=|.+ ++.+.+.+.
T Consensus 5 VG~~l~~~l~~~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dvvVE~t~-~~~~~~~~~------ 77 (117)
T PF03447_consen 5 VGRGLLEQLKEQQERIDLEVVGVADRSMLISKDWAASFPDEAFTTDLEELIDDPDIDVVVECTS-SEAVAEYYE------ 77 (117)
T ss_dssp HHHHHHHHHHHTHHHCEEEEEEEEESSEEEETTHHHHHTHSCEESSHHHHHTHTT-SEEEE-SS-CHHHHHHHH------
T ss_pred HHHHHHHHHHhCcccCCEEEEEEEECCchhhhhhhhhcccccccCCHHHHhcCcCCCEEEECCC-chHHHHHHH------
Confidence 789999999876 4554 456888 11111112235677889999998 8999999955 456666543
Q ss_pred ccCCCCCEEEEcCCCC---chHHHHHHHHHHhcCCce
Q psy764 73 KHAKPGVIVIDSSTVD---PQVPQTLSNLAREKQITF 106 (286)
Q Consensus 73 ~~l~~g~ivid~st~~---p~~~~~~~~~~~~~g~~~ 106 (286)
+.+..|.-||-+|... +...+++.+..++.|.++
T Consensus 78 ~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~ 114 (117)
T PF03447_consen 78 KALERGKHVVTANKGALADEALYEELREAARKNGVRI 114 (117)
T ss_dssp HHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EE
T ss_pred HHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEE
Confidence 3466888888776543 235556666666667654
|
Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D .... |
| >PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.58 E-value=0.084 Score=45.51 Aligned_cols=39 Identities=23% Similarity=0.376 Sum_probs=29.5
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.++.+.+++||+||.+++.+.-+.. +.+++|.+|||.+.
T Consensus 196 ~~l~~~~~~ADIVI~AvG~p~li~~---------~~vk~GavVIDVGi 234 (286)
T PRK14184 196 PDLAEECREADFLFVAIGRPRFVTA---------DMVKPGAVVVDVGI 234 (286)
T ss_pred hhHHHHHHhCCEEEEecCCCCcCCH---------HHcCCCCEEEEeee
Confidence 3578889999999999987643221 23578999999874
|
|
| >cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.16 Score=44.40 Aligned_cols=55 Identities=11% Similarity=0.148 Sum_probs=38.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHH----HHHc--------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQT----LAKE--------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~----l~~~--------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+.+|..|+.+|+ +|.++|+++++.+. +... .++.+.+. +.+++||+||++...
T Consensus 9 vG~~ia~~la~~~l~eV~L~Di~e~~~~g~~~dl~~~~~~~~~~~~I~~t~d~-~~l~dADiVIit~g~ 76 (300)
T cd01339 9 VGATLAQLLALKELGDVVLLDIVEGLPQGKALDISQAAPILGSDTKVTGTNDY-EDIAGSDVVVITAGI 76 (300)
T ss_pred HHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHHHHHHhhhhcCCCeEEEEcCCH-HHhCCCCEEEEecCC
Confidence 79999999998887 99999999876431 1111 12223454 457899999998853
|
Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas |
| >CHL00194 ycf39 Ycf39; Provisional | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.061 Score=47.28 Aligned_cols=55 Identities=18% Similarity=0.119 Sum_probs=42.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-------cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-------ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|.++||+|++..|++++...+...|+++ .+++.++++++|+||-+++
T Consensus 12 iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~~~~ 73 (317)
T CHL00194 12 LGRQIVRQALDEGYQVRCLVRNLRKASFLKEWGAELVYGDLSLPETLPPSFKGVTAIIDAST 73 (317)
T ss_pred HHHHHHHHHHHCCCeEEEEEcChHHhhhHhhcCCEEEECCCCCHHHHHHHHCCCCEEEECCC
Confidence 799999999999999999999987765555445432 1345677889999998765
|
|
| >PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.083 Score=45.68 Aligned_cols=63 Identities=17% Similarity=0.252 Sum_probs=46.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++..|.+.|.+|++++|.. .++.+.++++|+||.+++.+. .+. .+.+++|.+|
T Consensus 171 vGkpia~~L~~~gatVtv~~~~t--------------~~L~~~~~~aDIvI~AtG~~~----~v~-----~~~lk~gavV 227 (283)
T PRK14192 171 LGKPMAMMLLNANATVTICHSRT--------------QNLPELVKQADIIVGAVGKPE----LIK-----KDWIKQGAVV 227 (283)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCc--------------hhHHHHhccCCEEEEccCCCC----cCC-----HHHcCCCCEE
Confidence 67888888888888888888732 245566689999999997543 121 2347789999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
+|+...
T Consensus 228 iDvg~n 233 (283)
T PRK14192 228 VDAGFH 233 (283)
T ss_pred EEEEEe
Confidence 998653
|
|
| >COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.14 Score=43.83 Aligned_cols=63 Identities=17% Similarity=0.280 Sum_probs=42.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+|+.-|...++.|++.+.. +.++.+..+++||+|.++.-+.-++ .+.+++|.+|
T Consensus 168 VGkPla~lL~~~naTVtvcHs~--------------T~~l~~~~k~ADIvv~AvG~p~~i~---------~d~vk~gavV 224 (283)
T COG0190 168 VGKPLALLLLNANATVTVCHSR--------------TKDLASITKNADIVVVAVGKPHFIK---------ADMVKPGAVV 224 (283)
T ss_pred CcHHHHHHHHhCCCEEEEEcCC--------------CCCHHHHhhhCCEEEEecCCccccc---------cccccCCCEE
Confidence 4555555555555555555432 2467788999999999999764332 2346789999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||....
T Consensus 225 IDVGin 230 (283)
T COG0190 225 IDVGIN 230 (283)
T ss_pred EecCCc
Confidence 998654
|
|
| >PRK13301 putative L-aspartate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.38 Score=40.97 Aligned_cols=99 Identities=16% Similarity=0.119 Sum_probs=67.1
Q ss_pred ccHHHHHHHHhCC---Cc-EEEEcCCchHHHHHHHcCCcccCCHHHH-hhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQG---HD-VIVYDKNTDASQTLAKEGANMALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G---~~-V~~~dr~~~~~~~l~~~g~~~~~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||..++..|.+.+ ++ +.+|+|++++.+.+.+. ..++.++.++ ....|+|+=|-+ ++++++.... + |.
T Consensus 13 IG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~~~~~-~~~~~~l~~ll~~~~DlVVE~A~-~~av~e~~~~---i---L~ 84 (267)
T PRK13301 13 IASDVAAGLLADAAQPCQLAALTRNAADLPPALAGR-VALLDGLPGLLAWRPDLVVEAAG-QQAIAEHAEG---C---LT 84 (267)
T ss_pred HHHHHHHHHhcCCCCceEEEEEecCCHHHHHHhhcc-CcccCCHHHHhhcCCCEEEECCC-HHHHHHHHHH---H---Hh
Confidence 6777888776532 44 45679998888888664 7888999996 688999999977 6788887642 3 44
Q ss_pred CCCEEEEcCCC---CchHHHHHHHHHHhcCCc-eEe
Q psy764 77 PGVIVIDSSTV---DPQVPQTLSNLAREKQIT-FLD 108 (286)
Q Consensus 77 ~g~ivid~st~---~p~~~~~~~~~~~~~g~~-~~~ 108 (286)
.|.-++-+|.. ++...+++.+..++.|.+ |+.
T Consensus 85 ~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ip 120 (267)
T PRK13301 85 AGLDMIICSAGALADDALRARLIAAAEAGGARIRVP 120 (267)
T ss_pred cCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEe
Confidence 56655555643 344556666666555533 443
|
|
| >PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.32 Score=46.16 Aligned_cols=56 Identities=16% Similarity=0.207 Sum_probs=40.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH---------cC------C-----ccc--CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK---------EG------A-----NMA--LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~---------~g------~-----~~~--~s~~e~~~~adivi~~v~~ 57 (286)
||..+++.|++.|++|.+++|+.++.+.+.+ .| + .+. ++..+++.++|+||.|...
T Consensus 92 IG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aLggiDiVVn~AG~ 169 (576)
T PLN03209 92 VGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPALGNASVVICCIGA 169 (576)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHhcCCCEEEEcccc
Confidence 7999999999999999999999988765532 11 1 111 2334456789999988753
|
|
| >TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.098 Score=46.71 Aligned_cols=80 Identities=19% Similarity=0.226 Sum_probs=49.0
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHH-c----C---Cccc-CCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAK-E----G---ANMA-LSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~-~----g---~~~~-~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
+|..+.+.|.+. ++++. +++++...-+.+.+ . + .... .+..++.+++|+||+|+|+. ..+++...
T Consensus 12 vG~ellr~L~~hP~~el~~l~~s~~sagk~~~~~~~~l~~~~~~~~~~~~~~~~~~~~DvVf~alP~~-~s~~~~~~--- 87 (346)
T TIGR01850 12 TGGELLRLLLNHPEVEITYLVSSRESAGKPVSEVHPHLRGLVDLNLEPIDEEEIAEDADVVFLALPHG-VSAELAPE--- 87 (346)
T ss_pred HHHHHHHHHHcCCCceEEEEeccchhcCCChHHhCccccccCCceeecCCHHHhhcCCCEEEECCCch-HHHHHHHH---
Confidence 688899999876 45777 55644322222221 1 1 1111 14566667899999999986 44444431
Q ss_pred ccccCCCCCEEEEcCCCC
Q psy764 71 ILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~ 88 (286)
+ ...|..|||.|+..
T Consensus 88 ~---~~~G~~VIDlS~~f 102 (346)
T TIGR01850 88 L---LAAGVKVIDLSADF 102 (346)
T ss_pred H---HhCCCEEEeCChhh
Confidence 2 34689999999753
|
This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons. |
| >COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.14 Score=45.89 Aligned_cols=74 Identities=20% Similarity=0.110 Sum_probs=53.0
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEc
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDS 84 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~ 84 (286)
.++..|.+.|.+|.+||.....-......++..++++.+++++||+++++.-++ +++++-.. .. +-++.+|+|-
T Consensus 334 ~vi~~L~~~Ga~V~aYDP~a~~~~~~~~~~~~~~~~~~~~~~~aDaivi~tew~-ef~~~d~~---~~--~m~~~~v~Dg 407 (414)
T COG1004 334 DIIKRLQEKGAEVIAYDPVAMENAFRNFPDVELESDAEEALKGADAIVINTEWD-EFRDLDFE---KL--LMKTPVVIDG 407 (414)
T ss_pred HHHHHHHHCCCEEEEECchhhHHHHhcCCCceEeCCHHHHHhhCCEEEEeccHH-HHhccChh---hh--hccCCEEEec
Confidence 577889999999999997643221111124788999999999999999999874 66665432 12 4466788873
|
|
| >COG1090 Predicted nucleoside-diphosphate sugar epimerase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.068 Score=45.46 Aligned_cols=53 Identities=15% Similarity=0.209 Sum_probs=41.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh-cCcEEEE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS-GAEFIIS 53 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adivi~ 53 (286)
+||+.|...|.+.||+|++..|++.+.+......+...+..++... .+|+||=
T Consensus 9 lIG~~L~~~L~~~gh~v~iltR~~~~~~~~~~~~v~~~~~~~~~~~~~~DavIN 62 (297)
T COG1090 9 LIGRALTARLRKGGHQVTILTRRPPKASQNLHPNVTLWEGLADALTLGIDAVIN 62 (297)
T ss_pred chhHHHHHHHHhCCCeEEEEEcCCcchhhhcCccccccchhhhcccCCCCEEEE
Confidence 5899999999999999999999998876554444444455666666 6998774
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.081 Score=39.66 Aligned_cols=64 Identities=14% Similarity=0.305 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccC-----CHHHH----hh--cCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMAL-----SLSTL----AS--GAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~-----s~~e~----~~--~adivi~~v~~~~~~~~v~ 65 (286)
||...+..+...|.+|++.++++++.+.+.+.|+...- +..+. .. ..|+||-|++.+..++..+
T Consensus 2 vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~ 76 (130)
T PF00107_consen 2 VGLMAIQLAKAMGAKVIATDRSEEKLELAKELGADHVIDYSDDDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAI 76 (130)
T ss_dssp HHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTESEEEETTTSSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHH
T ss_pred hHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhcccccccccccccccccccccccccceEEEEecCcHHHHHHHH
Confidence 57777887888899999999999999988888743221 12222 22 3677777777555555544
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PTZ00142 6-phosphogluconate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=94.03 E-value=0.57 Score=43.62 Aligned_cols=110 Identities=8% Similarity=-0.011 Sum_probs=76.0
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH----c--CCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCCCC
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVK----L--GMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNG 227 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~----~--Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~ 227 (286)
+.++.+|.++|.+.+..+.+++|.+.+.++ + ++|..++.++-+.+. -+||+++.......--+ .+.+=-+.+
T Consensus 316 ~~~~~i~~v~~al~~~~i~ayaQGf~ll~~as~~y~w~ldl~~ia~iWr~GcIIRs~lL~~i~~a~~~~~-~l~nl~~~~ 394 (470)
T PTZ00142 316 DKKYFIDDLKNALYCSKIISYTQGFFLIKEASKEFGWNLNLGEIARIWRGGCIIRAVFLDRIKNAFKKNP-QLDLLFLDP 394 (470)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCceeeHhHHHHHHHHHhcCC-ChhhhcCCH
Confidence 678999999999999999999999998873 4 899999999988773 56666544222100000 000001122
Q ss_pred Ccc--chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 228 GFK--ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 228 ~f~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
.|. +......++.+...+-+.|+|+|.+.++...|+.-
T Consensus 395 ~~~~~i~~~~~~~R~vV~~a~~~gip~P~~s~aL~y~~s~ 434 (470)
T PTZ00142 395 DFNDELKNKQPSWRKVVSMATKNGIPTPAFSASLAYYQMY 434 (470)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 222 23345556889999999999999999999966644
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.087 Score=49.31 Aligned_cols=78 Identities=15% Similarity=0.212 Sum_probs=54.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc--CC-----------------H--------HHHhhcCcEEEEe
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA--LS-----------------L--------STLASGAEFIISM 54 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s-----------------~--------~e~~~~adivi~~ 54 (286)
+|..-+..+...|-+|+++|+++++.+...+.|++.. +. . .+.++++|+||.|
T Consensus 176 iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA~~v~i~~~e~~~~~~gya~~~s~~~~~~~~~~~~~~~~gaDVVIet 255 (509)
T PRK09424 176 AGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGAEFLELDFEEEGGSGDGYAKVMSEEFIKAEMALFAEQAKEVDIIITT 255 (509)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEEeccccccccccchhhhcchhHHHHHHHHHHhccCCCCEEEEC
Confidence 4566666667778899999999999998888887632 11 0 1112469999999
Q ss_pred cCChh-----HH-HHHhcCCccccccCCCCCEEEEcCC
Q psy764 55 LPASQ-----DV-LDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 55 v~~~~-----~~-~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
...+. .+ ++. .+.+++|.+|+|.+.
T Consensus 256 ag~pg~~aP~lit~~~-------v~~mkpGgvIVdvg~ 286 (509)
T PRK09424 256 ALIPGKPAPKLITAEM-------VASMKPGSVIVDLAA 286 (509)
T ss_pred CCCCcccCcchHHHHH-------HHhcCCCCEEEEEcc
Confidence 97543 22 333 345778999999875
|
|
| >PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.16 Score=44.09 Aligned_cols=40 Identities=15% Similarity=0.121 Sum_probs=30.4
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++|||||+++.-+.-+. .+.+++|.+|||.+..
T Consensus 196 ~~l~~~~~~ADIvIsAvGkp~~i~---------~~~ik~gaiVIDvGin 235 (297)
T PRK14167 196 DDLAAKTRRADIVVAAAGVPELID---------GSMLSEGATVIDVGIN 235 (297)
T ss_pred CCHHHHHhhCCEEEEccCCcCccC---------HHHcCCCCEEEEcccc
Confidence 457888999999999998765221 2347799999998754
|
|
| >cd05292 LDH_2 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.1 Score=45.85 Aligned_cols=56 Identities=18% Similarity=0.310 Sum_probs=40.7
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHH----HHHcC-----Cc-ccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQT----LAKEG-----AN-MALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~----l~~~g-----~~-~~~s~~e~~~~adivi~~v~~~ 58 (286)
+|+++|..|+.+| ++|.++|+++++.+. +.... .. .+.+. +.+++||+||++.+.+
T Consensus 11 VG~~~a~~l~~~g~~~ev~l~D~~~~~~~g~a~dl~~~~~~~~~~~i~~~d~-~~l~~aDiViita~~~ 78 (308)
T cd05292 11 VGSTTAYALLLRGLASEIVLVDINKAKAEGEAMDLAHGTPFVKPVRIYAGDY-ADCKGADVVVITAGAN 78 (308)
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCchhhhhHHHHHHccccccCCeEEeeCCH-HHhCCCCEEEEccCCC
Confidence 7999999999999 589999999887653 22111 01 12344 5678999999999864
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.42 Score=41.51 Aligned_cols=139 Identities=11% Similarity=0.138 Sum_probs=76.3
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhH---HHHHhcCC-----ccccccCC
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD---VLDAYDGS-----DGILKHAK 76 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~---~~~v~~~~-----~~l~~~l~ 76 (286)
-+++.|.++|++|.+|.-.... ..+ .|+..+++.+++++++|+||+++|-.+. ++.++... +.+++.++
T Consensus 15 ~~~~~l~~~g~~v~~~g~~~~~-~~~--~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~i~~~~~~~~~~l~~~~l~~~~ 91 (287)
T TIGR02853 15 ELIRKLEELDAKISLIGFDQLE-DGF--TGAVKCELLELDLTTLDVVILPVPGTSHDGKVATVFSNEKVVLTPELLESTK 91 (287)
T ss_pred HHHHHHHHCCCEEEEEeccccc-ccc--ccceeecchhhhhccCCEEEECCccccCCceEecccccCCccccHHHHHhcC
Confidence 4789999999999888654210 112 2677788888889999999999993222 22222110 12344455
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceE------eccCCCCHHhhh--------------cCceEEEecCCHhhHHH
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFL------DAPVSGGTKAAQ--------------EATLTFMVGGDKSSLEK 136 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~------~~pv~g~~~~a~--------------~g~l~~~~gg~~~~~~~ 136 (286)
++.++. +........ +.+.++|+.+. +.++.++.+.++ .+.-..++|. ...-..
T Consensus 92 ~~~~~~--~G~~~~~l~---~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~~~~l~gk~v~IiG~-G~iG~a 165 (287)
T TIGR02853 92 GHCTIY--VGISNPYLE---QLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHTDFTIHGSNVMVLGF-GRTGMT 165 (287)
T ss_pred CCCEEE--EecCCHHHH---HHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhcCCCCCCCEEEEEcC-hHHHHH
Confidence 544332 333333332 35667888887 444434333221 1332333333 333345
Q ss_pred HHHHHHHhcCCeEecC
Q psy764 137 AKPILKCMGRNIVHCG 152 (286)
Q Consensus 137 ~~~ll~~~g~~v~~~g 152 (286)
+...+..+|.+++...
T Consensus 166 vA~~L~~~G~~V~v~~ 181 (287)
T TIGR02853 166 IARTFSALGARVFVGA 181 (287)
T ss_pred HHHHHHHCCCEEEEEe
Confidence 5566666776655544
|
This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA. |
| >PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional | Back alignment and domain information |
|---|
Probab=93.89 E-value=0.16 Score=44.01 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=29.2
Q ss_pred CHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 40 SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 40 s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
++.+.+++||+||.+++.+. ++. ...+++|.+|||.+..
T Consensus 199 ~l~~~~~~ADIvI~Avg~~~----li~-----~~~vk~GavVIDVgi~ 237 (295)
T PRK14174 199 DIPSYTRQADILIAAIGKAR----FIT-----ADMVKPGAVVIDVGIN 237 (295)
T ss_pred hHHHHHHhCCEEEEecCccC----ccC-----HHHcCCCCEEEEeecc
Confidence 57888999999999998652 221 2346899999998753
|
|
| >PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1 | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.08 Score=42.03 Aligned_cols=83 Identities=18% Similarity=0.229 Sum_probs=52.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc--------------------------CCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA--------------------------LSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--------------------------~s~~e~~~~adivi~~v 55 (286)
+|..-+..|...|++|+++|.++++.+.+...+.... ..+.+.++.+|+||.+.
T Consensus 31 vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~~d~vI~~~ 110 (168)
T PF01262_consen 31 VGQGAAEIAKGLGAEVVVPDERPERLRQLESLGAYFIEVDYEDHLERKDFDKADYYEHPESYESNFAEFIAPADIVIGNG 110 (168)
T ss_dssp HHHHHHHHHHHTT-EEEEEESSHHHHHHHHHTTTEESEETTTTTTTSB-CCHHHCHHHCCHHHHHHHHHHHH-SEEEEHH
T ss_pred HHHHHHHHHhHCCCEEEeccCCHHHHHhhhcccCceEEEcccccccccccchhhhhHHHHHhHHHHHHHHhhCcEEeeec
Confidence 4666777788899999999999988887766543211 12455677899999644
Q ss_pred C-ChhHHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 56 P-ASQDVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 56 ~-~~~~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
- +......++.. ...+.++++.+|+|.|-
T Consensus 111 ~~~~~~~P~lvt~--~~~~~m~~gsvIvDis~ 140 (168)
T PF01262_consen 111 LYWGKRAPRLVTE--EMVKSMKPGSVIVDISC 140 (168)
T ss_dssp HBTTSS---SBEH--HHHHTSSTTEEEEETTG
T ss_pred ccCCCCCCEEEEh--HHhhccCCCceEEEEEe
Confidence 3 22233333322 23455789999999864
|
4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A .... |
| >cd00300 LDH_like L-lactate dehydrogenase-like enzymes | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.3 Score=42.73 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=41.8
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHHc---C------Ccc--cCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAKE---G------ANM--ALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~---g------~~~--~~s~~e~~~~adivi~~v~~~ 58 (286)
||+++|..|+..| +++.++|+++++++..+.. . .+. ..+ .+.+++||+||++...+
T Consensus 9 VG~~~a~~l~~~~~~~el~l~D~~~~~~~g~~~DL~~~~~~~~~~~i~~~~~-~~~l~~aDiVIitag~p 77 (300)
T cd00300 9 VGAAVAFALIAKGLASELVLVDVNEEKAKGDALDLSHASAFLATGTIVRGGD-YADAADADIVVITAGAP 77 (300)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHhHHHhccccCCCeEEECCC-HHHhCCCCEEEEcCCCC
Confidence 7999999999988 5899999999876554431 0 112 234 46788999999999854
|
Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot |
| >PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.11 Score=43.30 Aligned_cols=56 Identities=21% Similarity=0.232 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch--HHHHHHHcCCccc-------CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD--ASQTLAKEGANMA-------LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~-------~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|.+.+|+|.+.-|++. ..+.+...|+.+. +++.++++++|.||++++.
T Consensus 10 ~G~~v~~~L~~~~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~~~~~~l~~al~g~d~v~~~~~~ 74 (233)
T PF05368_consen 10 QGRSVVRALLSAGFSVRALVRDPSSDRAQQLQALGAEVVEADYDDPESLVAALKGVDAVFSVTPP 74 (233)
T ss_dssp HHHHHHHHHHHTTGCEEEEESSSHHHHHHHHHHTTTEEEES-TT-HHHHHHHHTTCSEEEEESSC
T ss_pred HHHHHHHHHHhCCCCcEEEEeccchhhhhhhhcccceEeecccCCHHHHHHHHcCCceEEeecCc
Confidence 689999999999999999988864 4667777775432 3455678899999999883
|
NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B .... |
| >PRK14982 acyl-ACP reductase; Provisional | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.19 Score=44.63 Aligned_cols=78 Identities=18% Similarity=0.260 Sum_probs=53.9
Q ss_pred ccHHHHHHHHhC-C-CcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQ-G-HDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~-G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||+.+++.|.++ | .++++++|+.++...+... +..-..++.+++.++|+||.+...+. .+... ...++++
T Consensus 167 IGs~lar~L~~~~gv~~lilv~R~~~rl~~La~el~~~~i~~l~~~l~~aDiVv~~ts~~~---~~~I~----~~~l~~~ 239 (340)
T PRK14982 167 IGSAVCRWLDAKTGVAELLLVARQQERLQELQAELGGGKILSLEEALPEADIVVWVASMPK---GVEID----PETLKKP 239 (340)
T ss_pred HHHHHHHHHHhhCCCCEEEEEcCCHHHHHHHHHHhccccHHhHHHHHccCCEEEECCcCCc---CCcCC----HHHhCCC
Confidence 789999999754 5 5899999999888877654 21122357788899999998887543 22111 1234678
Q ss_pred CEEEEcCC
Q psy764 79 VIVIDSST 86 (286)
Q Consensus 79 ~ivid~st 86 (286)
.+++|.+-
T Consensus 240 ~~viDiAv 247 (340)
T PRK14982 240 CLMIDGGY 247 (340)
T ss_pred eEEEEecC
Confidence 88998763
|
|
| >PRK09496 trkA potassium transporter peripheral membrane component; Reviewed | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.42 Score=44.19 Aligned_cols=97 Identities=12% Similarity=0.062 Sum_probs=59.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--CCcc-cC---CHHH----HhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--GANM-AL---SLST----LASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--g~~~-~~---s~~e----~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
+|..+++.|.+.|++|++.|+++++.+.+.+. +... .. +... -++++|.||++.+++.. .-.... +
T Consensus 242 ~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~~~~~~~~-n~~~~~---~ 317 (453)
T PRK09496 242 IGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIALTNDDEA-NILSSL---L 317 (453)
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEECCCCcHH-HHHHHH---H
Confidence 57899999999999999999999999888764 3322 11 2221 24689999998886532 222110 2
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
...+...++++-+.+. .. .+.+...|+.++-
T Consensus 318 ~~~~~~~~ii~~~~~~--~~----~~~~~~~g~~~vi 348 (453)
T PRK09496 318 AKRLGAKKVIALVNRP--AY----VDLVEGLGIDIAI 348 (453)
T ss_pred HHHhCCCeEEEEECCc--ch----HHHHHhcCCCEEE
Confidence 2334455666654432 22 2234556766553
|
|
| >PRK12550 shikimate 5-dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.3 Score=42.02 Aligned_cols=100 Identities=16% Similarity=0.195 Sum_probs=60.2
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhc-CCccc-cccCCCC
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYD-GSDGI-LKHAKPG 78 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~-~~~~l-~~~l~~g 78 (286)
+++++..|.+.|. +|+++||++++.+.+.+. +.....++ ....+|+||=|.|-.- ..-.. ....+ ...+.++
T Consensus 134 arAi~~aL~~~g~~~i~i~nR~~~~a~~la~~~~~~~~~~~--~~~~~dlvINaTp~Gm--~~~~~~~~~pi~~~~l~~~ 209 (272)
T PRK12550 134 AKAVAAALRDAGFTDGTIVARNEKTGKALAELYGYEWRPDL--GGIEADILVNVTPIGM--AGGPEADKLAFPEAEIDAA 209 (272)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhCCcchhhc--ccccCCEEEECCcccc--CCCCccccCCCCHHHcCCC
Confidence 5677888888887 599999999999888653 32221111 1246899999998431 10000 00001 1235678
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+++|+.-..+. + .+.+..++.|+..++
T Consensus 210 ~~v~D~vY~P~~-T-~ll~~A~~~G~~~i~ 237 (272)
T PRK12550 210 SVVFDVVALPAE-T-PLIRYARARGKTVIT 237 (272)
T ss_pred CEEEEeecCCcc-C-HHHHHHHHCcCeEeC
Confidence 899998654433 3 334556677877665
|
|
| >PRK10206 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.5 Score=42.14 Aligned_cols=88 Identities=13% Similarity=0.182 Sum_probs=59.1
Q ss_pred CCcE-EEEcCCchHHHHHHHcC-CcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC-EEEEc-CCC
Q psy764 14 GHDV-IVYDKNTDASQTLAKEG-ANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV-IVIDS-STV 87 (286)
Q Consensus 14 G~~V-~~~dr~~~~~~~l~~~g-~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~-ivid~-st~ 87 (286)
+.+| .++|+++++.+...+.+ ...++|.+++++ +.|+|++|+|+....+.+.. .+..|+ ++++. -+.
T Consensus 27 ~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~ell~~~~iD~V~I~tp~~~H~~~~~~-------al~aGkhVl~EKPla~ 99 (344)
T PRK10206 27 SWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKR-------ALEAGKNVLVEKPFTP 99 (344)
T ss_pred CEEEEEEEcCChhHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHH-------HHHcCCcEEEecCCcC
Confidence 4565 46899986653333344 667889999996 57999999998766665543 234454 55553 244
Q ss_pred CchHHHHHHHHHHhcCCceEe
Q psy764 88 DPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 88 ~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+..+.+++.+..+++|..+..
T Consensus 100 ~~~ea~~l~~~a~~~~~~l~v 120 (344)
T PRK10206 100 TLAEAKELFALAKSKGLTVTP 120 (344)
T ss_pred CHHHHHHHHHHHHHhCCEEEE
Confidence 567788888888777765543
|
|
| >PTZ00117 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.29 Score=43.22 Aligned_cols=53 Identities=15% Similarity=0.155 Sum_probs=38.2
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHH--------cC----CcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAK--------EG----ANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adivi~~v 55 (286)
||..++..++..| .+|.++|+++++.+...- .+ ++...+++ .+++||+||++.
T Consensus 16 vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~~-~l~~ADiVVita 81 (319)
T PTZ00117 16 IGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNYE-DIKDSDVVVITA 81 (319)
T ss_pred HHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCHH-HhCCCCEEEECC
Confidence 7899999999888 589999999875432111 01 22235566 779999999999
|
|
| >PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.15 Score=45.50 Aligned_cols=81 Identities=21% Similarity=0.254 Sum_probs=47.0
Q ss_pred ccHHHHHHHHhC-CCcEEE-EcCCchHHHHHHHc-----CC--cccCCHHH-HhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQ-GHDVIV-YDKNTDASQTLAKE-----GA--NMALSLST-LASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~-~dr~~~~~~~l~~~-----g~--~~~~s~~e-~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
+|..+++.|.+. ++++.. .+|+ ++.+.+.+. +. ....+..+ ...++|+||+|+|+... .++... +
T Consensus 14 vG~~l~~~L~~~p~~elv~v~~~~-~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~vD~Vf~alP~~~~-~~~v~~---a 88 (343)
T PRK00436 14 TGGELLRLLLNHPEVEIVAVTSRS-SAGKPLSDVHPHLRGLVDLVLEPLDPEILAGADVVFLALPHGVS-MDLAPQ---L 88 (343)
T ss_pred HHHHHHHHHHcCCCceEEEEECcc-ccCcchHHhCcccccccCceeecCCHHHhcCCCEEEECCCcHHH-HHHHHH---H
Confidence 677888888876 567654 5643 222222211 11 01222222 45689999999998644 444321 2
Q ss_pred cccCCCCCEEEEcCCCCch
Q psy764 72 LKHAKPGVIVIDSSTVDPQ 90 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~ 90 (286)
+..|+.|||.|+...-
T Consensus 89 ---~~aG~~VID~S~~fR~ 104 (343)
T PRK00436 89 ---LEAGVKVIDLSADFRL 104 (343)
T ss_pred ---HhCCCEEEECCcccCC
Confidence 3468999999976533
|
|
| >cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase | Back alignment and domain information |
|---|
Probab=93.03 E-value=3.3 Score=34.34 Aligned_cols=160 Identities=11% Similarity=0.080 Sum_probs=87.1
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCc----------hHHHHHHHcC-CcccC-----CHHHHh-hcCcEEEEecCChhHHHH
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNT----------DASQTLAKEG-ANMAL-----SLSTLA-SGAEFIISMLPASQDVLD 63 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~----------~~~~~l~~~g-~~~~~-----s~~e~~-~~adivi~~v~~~~~~~~ 63 (286)
+|+.+|+.|.+.|. .|.+.|.+. +..+...+.+ +...+ +..++. .+||++|-|-+....-.+
T Consensus 34 VG~~~a~~L~~~G~~vV~vsD~~g~i~~~Gld~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~DVlipaA~~~~i~~~ 113 (217)
T cd05211 34 VGWGLAKKLAEEGGKVLAVSDPDGYIYDPGITTEELINYAVALGGSARVKVQDYFPGEAILGLDVDIFAPCALGNVIDLE 113 (217)
T ss_pred HHHHHHHHHHHcCCEEEEEEcCCCcEECCCCCHHHHHHHHHhhCCccccCcccccCcccceeccccEEeeccccCccChh
Confidence 79999999999988 566779888 6665554443 22211 112222 379999988875422111
Q ss_pred HhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHH
Q psy764 64 AYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKC 143 (286)
Q Consensus 64 v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 143 (286)
. .+.+ +-++|+...+. |.+. +-.+.+.++|+.|++--+.+ .|- ++++ .++ +.+.
T Consensus 114 ~-------a~~l-~a~~V~e~AN~-p~t~-~a~~~L~~~Gi~v~Pd~~~N------aGG--vi~s----~~E----~~q~ 167 (217)
T cd05211 114 N-------AKKL-KAKVVAEGANN-PTTD-EALRILHERGIVVAPDIVAN------AGG--VIVS----YFE----WVQN 167 (217)
T ss_pred h-------Hhhc-CccEEEeCCCC-CCCH-HHHHHHHHCCcEEEChHHhc------CCC--eEeE----HHH----hcCC
Confidence 1 1122 24566665543 3333 55677888998887543332 122 1111 122 1111
Q ss_pred hcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy764 144 MGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVI 196 (286)
Q Consensus 144 ~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~ 196 (286)
... .++.. +-+.+-+...+...+.+.+..+++.|+++.+....+
T Consensus 168 ~~~-~~w~~--------~~v~~~l~~~m~~~~~~v~~~a~~~~~~~r~aA~~~ 211 (217)
T cd05211 168 LQR-LSWDA--------EEVRSKLEQVMTDIHNGVFAISERDGVTMRAAANIL 211 (217)
T ss_pred ccc-cCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 111 11111 111223344556677888888999999887665554
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral |
| >PRK06718 precorrin-2 dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=93.01 E-value=0.69 Score=37.92 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=38.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-HHHHHHHcC-CcccC-CH-HHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-ASQTLAKEG-ANMAL-SL-STLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~-s~-~e~~~~adivi~~v~~~~ 59 (286)
||...++.|.+.|++|++++++.. .+..+...+ +.... .+ .+.+.++|+||.|..++.
T Consensus 21 va~~ka~~Ll~~ga~V~VIs~~~~~~l~~l~~~~~i~~~~~~~~~~~l~~adlViaaT~d~e 82 (202)
T PRK06718 21 VAGRRAITLLKYGAHIVVISPELTENLVKLVEEGKIRWKQKEFEPSDIVDAFLVIAATNDPR 82 (202)
T ss_pred HHHHHHHHHHHCCCeEEEEcCCCCHHHHHHHhCCCEEEEecCCChhhcCCceEEEEcCCCHH
Confidence 567788889999999999987643 334554443 22211 11 234678999999988764
|
|
| >KOG1502|consensus | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.14 Score=44.82 Aligned_cols=54 Identities=17% Similarity=0.124 Sum_probs=41.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHH---HHHHHc-C-----------CcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDAS---QTLAKE-G-----------ANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~---~~l~~~-g-----------~~~~~s~~e~~~~adivi~~v 55 (286)
||+.+.+.|+++||+|.+--|+++.- +.+.+. | +.-..+..+++++||.||-+-
T Consensus 18 Igswivk~LL~rGY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai~gcdgVfH~A 86 (327)
T KOG1502|consen 18 IGSWIVKLLLSRGYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAIDGCDGVFHTA 86 (327)
T ss_pred HHHHHHHHHHhCCCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHHhCCCEEEEeC
Confidence 78999999999999999999988762 224332 1 344568899999999988653
|
|
| >cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity | Back alignment and domain information |
|---|
Probab=92.96 E-value=0.14 Score=44.90 Aligned_cols=55 Identities=11% Similarity=0.245 Sum_probs=37.4
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCc--hHHHHH----H----HcC----CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNT--DASQTL----A----KEG----ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~--~~~~~l----~----~~g----~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|..++..|+..|+ +|.++||++ ++++.. . ..+ +....+. +.+++||+||+|+..
T Consensus 12 vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~d~~~~~~~~~~i~~~~d~-~~l~~aDiViitag~ 82 (309)
T cd05294 12 VGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIYDALAAAGIDAEIKISSDL-SDVAGSDIVIITAGV 82 (309)
T ss_pred HHHHHHHHHHhCCCCCEEEEEECcccccccccccchhhhchhccCCCcEEEECCCH-HHhCCCCEEEEecCC
Confidence 68899999999987 499999965 443211 1 112 1223454 458999999999974
|
The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox |
| >TIGR01777 yfcH conserved hypothetical protein TIGR01777 | Back alignment and domain information |
|---|
Probab=92.90 E-value=0.12 Score=44.41 Aligned_cols=55 Identities=24% Similarity=0.267 Sum_probs=37.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc--cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM--ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~--~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|++.|++|++.+|++++...+...+... .....+.+.++|+||-|..
T Consensus 10 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~Vvh~a~ 66 (292)
T TIGR01777 10 IGRALTQRLTKDGHEVTILTRSPPAGANTKWEGYKPWAPLAESEALEGADAVINLAG 66 (292)
T ss_pred hhHHHHHHHHHcCCEEEEEeCCCCCCCcccceeeecccccchhhhcCCCCEEEECCC
Confidence 799999999999999999999887643322111110 1234456677888887775
|
This model represents a clade of proteins of unknown function including the E. coli yfcH protein. |
| >COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.88 E-value=0.31 Score=41.58 Aligned_cols=75 Identities=20% Similarity=0.226 Sum_probs=49.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.|+++||+|.+..|+.++.+++.+. +++-. -+++++-+=+.++.++..+... +.....+=++
T Consensus 18 IG~~~A~~lA~~g~~liLvaR~~~kL~~la~~-------l~~~~~v~v~vi~~DLs~~~~~~~l~~~---l~~~~~~Idv 87 (265)
T COG0300 18 IGAELAKQLARRGYNLILVARREDKLEALAKE-------LEDKTGVEVEVIPADLSDPEALERLEDE---LKERGGPIDV 87 (265)
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHH-------HHHhhCceEEEEECcCCChhHHHHHHHH---HHhcCCcccE
Confidence 79999999999999999999999999888653 11111 1344444445666777776653 3332223356
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
+|+...
T Consensus 88 LVNNAG 93 (265)
T COG0300 88 LVNNAG 93 (265)
T ss_pred EEECCC
Confidence 776543
|
|
| >KOG1200|consensus | Back alignment and domain information |
|---|
Probab=92.72 E-value=0.48 Score=38.36 Aligned_cols=78 Identities=17% Similarity=0.219 Sum_probs=52.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.+++..|+++|++|.+.|++.+.++..+.. +.. -....=+|| |..+.+++..+++ ..+.+.+-.+
T Consensus 26 IGrAia~~la~~Garv~v~dl~~~~A~ata~~L~g~----~~h~aF~~D-----VS~a~~v~~~l~e---~~k~~g~psv 93 (256)
T KOG1200|consen 26 IGRAIAQLLAKKGARVAVADLDSAAAEATAGDLGGY----GDHSAFSCD-----VSKAHDVQNTLEE---MEKSLGTPSV 93 (256)
T ss_pred HHHHHHHHHHhcCcEEEEeecchhhHHHHHhhcCCC----Cccceeeec-----cCcHHHHHHHHHH---HHHhcCCCcE
Confidence 79999999999999999999998766655432 211 011112344 4566677776664 5556667788
Q ss_pred EEEcCCCCchH
Q psy764 81 VIDSSTVDPQV 91 (286)
Q Consensus 81 vid~st~~p~~ 91 (286)
+|+|..+.-+.
T Consensus 94 lVncAGItrD~ 104 (256)
T KOG1200|consen 94 LVNCAGITRDG 104 (256)
T ss_pred EEEcCcccccc
Confidence 99988775543
|
|
| >COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.69 E-value=0.25 Score=43.58 Aligned_cols=79 Identities=14% Similarity=0.176 Sum_probs=60.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|...|.+|...|-+|.|++.+|-++-+..=.|.++. ..+|++..+||+|+|..+-. |+.. .-...++.|.++
T Consensus 220 vGrG~A~~~rg~GA~ViVtEvDPI~AleA~MdGf~V~-~m~~Aa~~gDifiT~TGnkd----Vi~~--eh~~~MkDgaIl 292 (420)
T COG0499 220 VGRGIAMRLRGMGARVIVTEVDPIRALEAAMDGFRVM-TMEEAAKTGDIFVTATGNKD----VIRK--EHFEKMKDGAIL 292 (420)
T ss_pred cchHHHHHhhcCCCeEEEEecCchHHHHHhhcCcEEE-EhHHhhhcCCEEEEccCCcC----ccCH--HHHHhccCCeEE
Confidence 6889999999999999999999988766665687765 48899999999999998733 2221 122346778888
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
.+..--
T Consensus 293 ~N~GHF 298 (420)
T COG0499 293 ANAGHF 298 (420)
T ss_pred eccccc
Confidence 877643
|
|
| >PRK06182 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.62 E-value=0.49 Score=40.39 Aligned_cols=70 Identities=17% Similarity=0.130 Sum_probs=46.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|++.+|++++.+.+... +..++..-+.++.+++.++.. +.+...+=+++
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~l~~~~~~-------------~~~~~~~Dv~~~~~~~~~~~~---~~~~~~~id~l 78 (273)
T PRK06182 15 IGKATARRLAAQGYTVYGAARRVDKMEDLASL-------------GVHPLSLDVTDEASIKAAVDT---IIAEEGRIDVL 78 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhC-------------CCeEEEeeCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 79999999999999999999998877655432 234455556666676666653 33222233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 79 i~~ag~ 84 (273)
T PRK06182 79 VNNAGY 84 (273)
T ss_pred EECCCc
Confidence 766554
|
|
| >TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.64 Score=39.99 Aligned_cols=56 Identities=9% Similarity=-0.023 Sum_probs=38.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC----CcccCCHHHHh------hc-CcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG----ANMALSLSTLA------SG-AEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g----~~~~~s~~e~~------~~-adivi~~v~~ 57 (286)
+|+.+++.|.+.|++|.+..|++++.....-.. ..-.+++.+++ ++ +|.+|++.|.
T Consensus 11 iG~~vv~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~d~~d~~~l~~a~~~~~~~~g~~d~v~~~~~~ 77 (285)
T TIGR03649 11 TASRIARLLQAASVPFLVASRSSSSSAGPNEKHVKFDWLDEDTWDNPFSSDDGMEPEISAVYLVAPP 77 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEeCCCccccCCCCccccccCCCHHHHHHHHhcccCcCCceeEEEEeCCC
Confidence 799999999999999999999987543210001 11123455555 45 8999988774
|
This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi. |
| >COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.43 E-value=0.49 Score=39.66 Aligned_cols=76 Identities=14% Similarity=0.101 Sum_probs=53.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.+.|+.|+++|++|.+..|+.++++.++..--. ..+..+.+=|.|.++++..+.. +.+...+=+++
T Consensus 18 iG~A~A~~l~~~G~~vvl~aRR~drL~~la~~~~~---------~~~~~~~~DVtD~~~~~~~i~~---~~~~~g~iDiL 85 (246)
T COG4221 18 IGEATARALAEAGAKVVLAARREERLEALADEIGA---------GAALALALDVTDRAAVEAAIEA---LPEEFGRIDIL 85 (246)
T ss_pred HHHHHHHHHHHCCCeEEEEeccHHHHHHHHHhhcc---------CceEEEeeccCCHHHHHHHHHH---HHHhhCcccEE
Confidence 79999999999999999999999999988754111 3455666667787787777663 33333344666
Q ss_pred EEcCCCCc
Q psy764 82 IDSSTVDP 89 (286)
Q Consensus 82 id~st~~p 89 (286)
|+-....+
T Consensus 86 vNNAGl~~ 93 (246)
T COG4221 86 VNNAGLAL 93 (246)
T ss_pred EecCCCCc
Confidence 76544433
|
|
| >PRK14027 quinate/shikimate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=1.1 Score=38.73 Aligned_cols=100 Identities=18% Similarity=0.126 Sum_probs=60.6
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-----CC---cccC--CHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-----GA---NMAL--SLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g~---~~~~--s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
+++++..|++.|. +|+++||+.++++.+.+. +. ...+ +..+...++|+||=|.|-.- ..--. ..+
T Consensus 139 arAi~~aL~~~g~~~i~i~nR~~~ka~~La~~~~~~~~~~~~~~~~~~~~~~~~~~~divINaTp~Gm--~~~~~--~~~ 214 (283)
T PRK14027 139 GNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGM--PAHPG--TAF 214 (283)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCHHHHHHHHHHHhhccCcceEEecCHhHHHHHHhhcCEEEEcCCCCC--CCCCC--CCC
Confidence 5678888888886 799999999999888653 11 1111 12335567999999988431 11000 001
Q ss_pred -cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 72 -LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 72 -~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
...+.++.++.|+--.. ..+. +.+..++.|+..++
T Consensus 215 ~~~~l~~~~~v~D~vY~P-~~T~-ll~~A~~~G~~~~~ 250 (283)
T PRK14027 215 DVSCLTKDHWVGDVVYMP-IETE-LLKAARALGCETLD 250 (283)
T ss_pred CHHHcCCCcEEEEcccCC-CCCH-HHHHHHHCCCEEEc
Confidence 12356678899986543 3332 34455667776665
|
|
| >PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=92.30 E-value=1.5 Score=40.82 Aligned_cols=54 Identities=22% Similarity=0.310 Sum_probs=39.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-----HHHHHHHcCCcccC--CHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-----ASQTLAKEGANMAL--SLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~--s~~e~~~~adivi~~v 55 (286)
.|.++|+.|.+.|++|+++|+++. ..+++.+.|+.+.. ...+.+.++|+||.+.
T Consensus 25 sG~a~a~~L~~~G~~V~~~D~~~~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~dlVV~Sp 85 (458)
T PRK01710 25 SNIPLIKFLVKLGAKVTAFDKKSEEELGEVSNELKELGVKLVLGENYLDKLDGFDVIFKTP 85 (458)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCccchHHHHHHHhCCCEEEeCCCChHHhccCCEEEECC
Confidence 367899999999999999998753 22456666876542 2345567899998874
|
|
| >PRK12749 quinate/shikimate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=92.20 E-value=0.64 Score=40.39 Aligned_cols=99 Identities=14% Similarity=0.220 Sum_probs=59.1
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCc---hHHHHHHHc-C------CcccCCH------HHHhhcCcEEEEecCChhH--HHH
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNT---DASQTLAKE-G------ANMALSL------STLASGAEFIISMLPASQD--VLD 63 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~---~~~~~l~~~-g------~~~~~s~------~e~~~~adivi~~v~~~~~--~~~ 63 (286)
+++++..|++.|. +|+++||++ ++++.+.+. + +.. .++ .+...++|+||-|.|-.-. ...
T Consensus 136 arAi~~~l~~~g~~~i~i~nRt~~~~~ka~~la~~~~~~~~~~~~~-~~~~~~~~l~~~~~~aDivINaTp~Gm~~~~~~ 214 (288)
T PRK12749 136 STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTV-TDLADQQAFAEALASADILTNGTKVGMKPLENE 214 (288)
T ss_pred HHHHHHHHHHCCCCEEEEEeCCccHHHHHHHHHHHhhhccCceEEE-echhhhhhhhhhcccCCEEEECCCCCCCCCCCC
Confidence 4566677888886 799999995 477777542 1 111 222 2345678999999885311 000
Q ss_pred -HhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 64 -AYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 64 -v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
... -...+.++.++.|+--. |..+ .+.+..+++|+..++
T Consensus 215 ~~~~----~~~~l~~~~~v~D~vY~-P~~T-~ll~~A~~~G~~~~~ 254 (288)
T PRK12749 215 SLVN----DISLLHPGLLVTECVYN-PHMT-KLLQQAQQAGCKTID 254 (288)
T ss_pred CCCC----cHHHCCCCCEEEEecCC-CccC-HHHHHHHHCCCeEEC
Confidence 110 01235678899998644 4333 345556677877765
|
|
| >PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.13 E-value=0.53 Score=39.88 Aligned_cols=73 Identities=11% Similarity=0.059 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.. -....++..-+.++.+++.++.. +.+...+=+++
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~l 84 (263)
T PRK06200 18 IGRALVERFLAEGARVAVLERSAEKLASLRQRF----------GDHVLVVEGDVTSYADNQRAVDQ---TVDAFGKLDCF 84 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCcceEEEccCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 799999999999999999999988877664431 01233444445666666666553 33323333577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 85 i~~ag~ 90 (263)
T PRK06200 85 VGNAGI 90 (263)
T ss_pred EECCCC
Confidence 776654
|
|
| >PRK06349 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.00 E-value=1.3 Score=40.79 Aligned_cols=100 Identities=14% Similarity=0.202 Sum_probs=59.8
Q ss_pred ccHHHHHHHHhC--------CC--c-EEEEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQ--------GH--D-VIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~--------G~--~-V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~ 68 (286)
||+.+++.|.++ |. + +.++||++++...+...+..+++++.++++ +.|+|+.|.+......+.
T Consensus 14 VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~~~~~~~~~~~~~~~d~~~ll~d~~iDvVve~tg~~~~~~~~---- 89 (426)
T PRK06349 14 VGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLEKDRGVDLPGILLTTDPEELVNDPDIDIVVELMGGIEPAREL---- 89 (426)
T ss_pred HHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChhhccCCCCcccceeCCHHHHhhCCCCCEEEECCCCchHHHHH----
Confidence 577777666443 33 3 446799887654332224567788999986 469999988754332333
Q ss_pred ccccccCCCCCEEEEcCC-CCchHHHHHHHHHHhcCCceE
Q psy764 69 DGILKHAKPGVIVIDSST-VDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st-~~p~~~~~~~~~~~~~g~~~~ 107 (286)
+...+..|+-||-... ......+++.+..+++|..+.
T Consensus 90 --~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~ 127 (426)
T PRK06349 90 --ILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLY 127 (426)
T ss_pred --HHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEE
Confidence 2344667887773322 112344566666667776544
|
|
| >COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.46 Score=41.86 Aligned_cols=134 Identities=15% Similarity=0.139 Sum_probs=65.4
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-----CC---cc-cCCHHHH-hhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-----GA---NM-ALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g~---~~-~~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
|.-|.+.|..+.+ ++..+..+..+=+.+.+. |. .. ..+++++ .++||+||+|+|+..+.+-|-. +
T Consensus 15 G~EL~rlL~~Hp~ve~~~~ss~~~~g~~~~~~~p~l~g~~~l~~~~~~~~~~~~~~~DvvFlalPhg~s~~~v~~----l 90 (349)
T COG0002 15 GLELLRLLAGHPDVELILISSRERAGKPVSDVHPNLRGLVDLPFQTIDPEKIELDECDVVFLALPHGVSAELVPE----L 90 (349)
T ss_pred HHHHHHHHhcCCCeEEEEeechhhcCCchHHhCcccccccccccccCChhhhhcccCCEEEEecCchhHHHHHHH----H
Confidence 5667777776654 666554333222222221 21 11 1233443 4569999999998655443332 2
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHh---cCCceEeccCCCCHH----hhhcCceEEEecCCH-hhHHHHHHHHHH
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLARE---KQITFLDAPVSGGTK----AAQEATLTFMVGGDK-SSLEKAKPILKC 143 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~---~g~~~~~~pv~g~~~----~a~~g~l~~~~gg~~-~~~~~~~~ll~~ 143 (286)
+.+|..|||+|+-.--...++-+.+=. .+-.+++--+.|-|+ ......++---|+-. ...-.+.||++.
T Consensus 91 ---~~~g~~VIDLSadfR~~d~~~ye~~Yg~~h~~~~~l~~avYGLpEl~~e~i~~A~lIAnPGCypTa~iLal~PL~~~ 167 (349)
T COG0002 91 ---LEAGCKVIDLSADFRLKDPEVYEKWYGFTHAGPELLEDAVYGLPELHREKIRGAKLIANPGCYPTAAILALAPLVKA 167 (349)
T ss_pred ---HhCCCeEEECCcccccCCHHHHHHhhCCCCCCchhhhcccccCcccCHHHHhcCCEeeCCCchHHHHHHHHHHHHHc
Confidence 335677999998543222222221111 112233333334332 223344444445543 444567788876
|
|
| >PLN02383 aspartate semialdehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=91.94 E-value=0.18 Score=44.94 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCc---EEEE--cCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGHD---VIVY--DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~---V~~~--dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+|..+.+.|.+.+|+ +... .|+..+.-........+.+...+.++++|+||+|+|+. ...++... ...
T Consensus 19 vG~eLlrlL~~~~hP~~~l~~las~rsaGk~~~~~~~~~~v~~~~~~~~~~~D~vf~a~p~~-~s~~~~~~------~~~ 91 (344)
T PLN02383 19 VGQEFLSVLTDRDFPYSSLKMLASARSAGKKVTFEGRDYTVEELTEDSFDGVDIALFSAGGS-ISKKFGPI------AVD 91 (344)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEccCCCCCeeeecCceeEEEeCCHHHHcCCCEEEECCCcH-HHHHHHHH------HHh
Confidence 688899999888873 3322 44443322221111222222224458899999999975 44444331 234
Q ss_pred CCCEEEEcCCC
Q psy764 77 PGVIVIDSSTV 87 (286)
Q Consensus 77 ~g~ivid~st~ 87 (286)
.|..|||.|+.
T Consensus 92 ~g~~VIDlS~~ 102 (344)
T PLN02383 92 KGAVVVDNSSA 102 (344)
T ss_pred CCCEEEECCch
Confidence 68899999974
|
|
| >PRK11579 putative oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=91.71 E-value=1 Score=40.06 Aligned_cols=85 Identities=18% Similarity=0.173 Sum_probs=57.6
Q ss_pred CCcEE-EEcCCchHHHHHHHc-CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCCE-EEEc-CCC
Q psy764 14 GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI-VIDS-STV 87 (286)
Q Consensus 14 G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i-vid~-st~ 87 (286)
+.++. ++|+++++.. .+. +...++|++++++ +.|+|++|+|+....+.+.. .+..|+- +++. -+.
T Consensus 29 ~~~l~av~d~~~~~~~--~~~~~~~~~~~~~ell~~~~vD~V~I~tp~~~H~~~~~~-------al~aGkhVl~EKPla~ 99 (346)
T PRK11579 29 GLELAAVSSSDATKVK--ADWPTVTVVSEPQHLFNDPNIDLIVIPTPNDTHFPLAKA-------ALEAGKHVVVDKPFTV 99 (346)
T ss_pred CCEEEEEECCCHHHHH--hhCCCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH-------HHHCCCeEEEeCCCCC
Confidence 56654 6899987654 222 5667889999996 57999999998766555543 2445654 4443 234
Q ss_pred CchHHHHHHHHHHhcCCceE
Q psy764 88 DPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 88 ~p~~~~~~~~~~~~~g~~~~ 107 (286)
+..+.+++.+..++.|..+.
T Consensus 100 t~~ea~~l~~~a~~~g~~l~ 119 (346)
T PRK11579 100 TLSQARELDALAKSAGRVLS 119 (346)
T ss_pred CHHHHHHHHHHHHHhCCEEE
Confidence 56777888887777776544
|
|
| >PRK06180 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.58 Score=40.07 Aligned_cols=73 Identities=8% Similarity=-0.035 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+... .+...+..-+.++.++...+.+ +.+...+=+++
T Consensus 16 iG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~----------~~~~~~~~D~~d~~~~~~~~~~---~~~~~~~~d~v 82 (277)
T PRK06180 16 FGRALAQAALAAGHRVVGTVRSEAARADFEALHP----------DRALARLLDVTDFDAIDAVVAD---AEATFGPIDVL 82 (277)
T ss_pred HHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcC----------CCeeEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 7999999999999999999999887766644210 1223334445666666665543 33322233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 83 v~~ag~ 88 (277)
T PRK06180 83 VNNAGY 88 (277)
T ss_pred EECCCc
Confidence 776544
|
|
| >COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.24 Score=42.91 Aligned_cols=81 Identities=20% Similarity=0.258 Sum_probs=55.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCc------ccCCHHHHhhcCcEEEEecCChh--HHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GAN------MALSLSTLASGAEFIISMLPASQ--DVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~------~~~s~~e~~~~adivi~~v~~~~--~~~~v~~~~~~l~ 72 (286)
+|+.-|+-..--|-+|++.|+|.+|...+... +.+ -...+++.+.++|+||-+|--+. +-+-|.. ...
T Consensus 179 vgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~~st~~~iee~v~~aDlvIgaVLIpgakaPkLvt~---e~v 255 (371)
T COG0686 179 VGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTLYSTPSNIEEAVKKADLVIGAVLIPGAKAPKLVTR---EMV 255 (371)
T ss_pred ccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEEEcCHHHHHHHhhhccEEEEEEEecCCCCceehhH---HHH
Confidence 46666666666678999999999998877554 332 12346788899999998874332 2222222 255
Q ss_pred ccCCCCCEEEEcC
Q psy764 73 KHAKPGVIVIDSS 85 (286)
Q Consensus 73 ~~l~~g~ivid~s 85 (286)
+.++||.+|||..
T Consensus 256 k~MkpGsVivDVA 268 (371)
T COG0686 256 KQMKPGSVIVDVA 268 (371)
T ss_pred HhcCCCcEEEEEE
Confidence 6789999999975
|
|
| >PRK05693 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=91.51 E-value=0.82 Score=39.01 Aligned_cols=70 Identities=10% Similarity=0.058 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|++.+|++++.+.+.+.+ .+.+..=+.++..++.++.. +.+...+=+++
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-------------~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~v 76 (274)
T PRK05693 13 IGRALADAFKAAGYEVWATARKAEDVEALAAAG-------------FTAVQLDVNDGAALARLAEE---LEAEHGGLDVL 76 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCC-------------CeEEEeeCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 789999999999999999999987766554322 23343445666667666653 32222233677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 77 i~~ag~ 82 (274)
T PRK05693 77 INNAGY 82 (274)
T ss_pred EECCCC
Confidence 777653
|
|
| >PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase | Back alignment and domain information |
|---|
Probab=91.45 E-value=0.32 Score=43.97 Aligned_cols=79 Identities=11% Similarity=0.083 Sum_probs=48.7
Q ss_pred ccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHcC-------CcccCCHH-HHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKEG-------ANMALSLS-TLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~-e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
+|..+.+.|.++ .++|..+.++.++-+.+.... .....+.+ +.++++|+||+|+|+. ...++..
T Consensus 50 vG~eLlrlL~~hP~~el~~l~s~~saG~~i~~~~~~l~~~~~~~~~~~~~~~~~~~DvVf~Alp~~-~s~~i~~------ 122 (381)
T PLN02968 50 TGAEVRRLLANHPDFEITVMTADRKAGQSFGSVFPHLITQDLPNLVAVKDADFSDVDAVFCCLPHG-TTQEIIK------ 122 (381)
T ss_pred HHHHHHHHHHhCCCCeEEEEEChhhcCCCchhhCccccCccccceecCCHHHhcCCCEEEEcCCHH-HHHHHHH------
Confidence 688888988887 568888766544322222111 11111222 2247899999999974 4555543
Q ss_pred ccCCCCCEEEEcCCCC
Q psy764 73 KHAKPGVIVIDSSTVD 88 (286)
Q Consensus 73 ~~l~~g~ivid~st~~ 88 (286)
.+..|..|||.|+..
T Consensus 123 -~~~~g~~VIDlSs~f 137 (381)
T PLN02968 123 -ALPKDLKIVDLSADF 137 (381)
T ss_pred -HHhCCCEEEEcCchh
Confidence 134678999999754
|
|
| >cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins | Back alignment and domain information |
|---|
Probab=91.28 E-value=1.3 Score=33.94 Aligned_cols=104 Identities=17% Similarity=0.144 Sum_probs=60.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc--------CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE--------GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
+|+.++++|++.|. +++++|.+.-....+... |-.-+...++.++ ..++-+.+.+....-...
T Consensus 10 lGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~~~~------ 83 (143)
T cd01483 10 LGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISEDNL------ 83 (143)
T ss_pred HHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecChhhH------
Confidence 68999999999998 699998774333333211 2111122222222 123444444321111111
Q ss_pred ccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCC
Q psy764 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
...+.+-++||+++.. +.....+.+.+.+.++.|+++-..|
T Consensus 84 -~~~~~~~diVi~~~d~-~~~~~~l~~~~~~~~i~~i~~~~~g 124 (143)
T cd01483 84 -DDFLDGVDLVIDAIDN-IAVRRALNRACKELGIPVIDAGGLG 124 (143)
T ss_pred -HHHhcCCCEEEECCCC-HHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 1223466899988665 5666678888888999999877665
|
This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. |
| >PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=91.16 E-value=1.8 Score=40.68 Aligned_cols=56 Identities=16% Similarity=0.105 Sum_probs=41.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccC--CHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMAL--SLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~--s~~e~~~~adivi~~v~~ 57 (286)
.|.+.++.|.+.|++|+++|++++..+.+.+.|+.... ...+.++++|+||.+-.-
T Consensus 23 sG~aa~~~L~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~l~~~D~VV~SpGi 80 (488)
T PRK03369 23 TGRAVLAALTRFGARPTVCDDDPDALRPHAERGVATVSTSDAVQQIADYALVVTSPGF 80 (488)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHhCCCEEEcCcchHhHhhcCCEEEECCCC
Confidence 47778888899999999999887776666666775542 244556789999887643
|
|
| >COG2910 Putative NADH-flavin reductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.14 E-value=0.25 Score=39.51 Aligned_cols=56 Identities=20% Similarity=0.120 Sum_probs=41.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----cCCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----EGANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----~g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|+-+.+-..+.||+|+.+-||++|...+.. ..+.-..++++.+.+-|+||.+..-
T Consensus 12 ~Gs~i~~EA~~RGHeVTAivRn~~K~~~~~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~ 72 (211)
T COG2910 12 AGSRILKEALKRGHEVTAIVRNASKLAARQGVTILQKDIFDLTSLASDLAGHDAVISAFGA 72 (211)
T ss_pred hHHHHHHHHHhCCCeeEEEEeChHhccccccceeecccccChhhhHhhhcCCceEEEeccC
Confidence 5788888899999999999999998765321 1122223455778889999998853
|
|
| >PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=90.76 E-value=3.6 Score=38.00 Aligned_cols=54 Identities=19% Similarity=0.148 Sum_probs=38.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch----HHHHHHHcCCccc--CCHHHHhhc-CcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD----ASQTLAKEGANMA--LSLSTLASG-AEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~----~~~~l~~~g~~~~--~s~~e~~~~-adivi~~v 55 (286)
+|.+.|+.|++.|++|.++|++.. ..+.+.+.|+... ....++... .|+||.+-
T Consensus 16 ~G~s~a~~l~~~G~~V~~~d~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~d~vV~s~ 76 (447)
T PRK02472 16 SGYAAAKLLHKLGANVTVNDGKPFSENPEAQELLEEGIKVICGSHPLELLDEDFDLMVKNP 76 (447)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCccchhHHHHHHhcCCEEEeCCCCHHHhcCcCCEEEECC
Confidence 588899999999999999998653 2344656676654 234455554 89888765
|
|
| >PRK06139 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=0.86 Score=40.37 Aligned_cols=75 Identities=11% Similarity=0.094 Sum_probs=46.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+++.+. ..+.-.+..++..=+.++++++.++.. +.+...+=+++
T Consensus 19 IG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~-------~~~~g~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 88 (330)
T PRK06139 19 IGQATAEAFARRGARLVLAARDEEALQAVAEE-------CRALGAEVLVVPTDVTDADQVKALATQ---AASFGGRIDVW 88 (330)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEeeCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 79999999999999999999998877655432 111001122333445666777776653 32222233577
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 89 VnnAG 93 (330)
T PRK06139 89 VNNVG 93 (330)
T ss_pred EECCC
Confidence 77654
|
|
| >PRK08265 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.65 E-value=0.81 Score=38.78 Aligned_cols=72 Identities=17% Similarity=0.158 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+++.+.- -....++..-+.+..+++.++.. +.+...+=+++
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~g~id~l 84 (261)
T PRK08265 18 IGAAVARALVAAGARVAIVDIDADNGAAVAASL----------GERARFIATDITDDAAIERAVAT---VVARFGRVDIL 84 (261)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCeeEEEEecCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 799999999999999999999987766654320 01223333445566666666553 33323333566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 85 v~~ag 89 (261)
T PRK08265 85 VNLAC 89 (261)
T ss_pred EECCC
Confidence 66544
|
|
| >PRK12828 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.64 E-value=1.3 Score=36.63 Aligned_cols=74 Identities=11% Similarity=0.028 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|++.+|++++..+..+. .. ....+++..-+.+..+++.++.+ +.+...+-+.|
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-~~--------~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 86 (239)
T PRK12828 19 LGRATAAWLAARGARVALIGRGAAPLSQTLPG-VP--------ADALRIGGIDLVDPQAARRAVDE---VNRQFGRLDAL 86 (239)
T ss_pred HhHHHHHHHHHCCCeEEEEeCChHhHHHHHHH-Hh--------hcCceEEEeecCCHHHHHHHHHH---HHHHhCCcCEE
Confidence 78999999999999999999988765443221 00 11244555666777777776653 33323334567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
++....
T Consensus 87 i~~ag~ 92 (239)
T PRK12828 87 VNIAGA 92 (239)
T ss_pred EECCcc
Confidence 766543
|
|
| >TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating) | Back alignment and domain information |
|---|
Probab=90.59 E-value=1.1 Score=38.82 Aligned_cols=80 Identities=18% Similarity=0.199 Sum_probs=52.6
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHH--HHHHHcCCcc-cCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDAS--QTLAKEGANM-ALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~--~~l~~~g~~~-~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
||+.++..+.+. +.++. ++|+++++. +...+.|+.. +++.+++++ +.|+||+|.|+....+... ..
T Consensus 12 IG~~h~~~ll~~~~~elvaV~d~d~es~~la~A~~~Gi~~~~~~~e~ll~~~dIDaV~iaTp~~~H~e~a~-------~a 84 (285)
T TIGR03215 12 IGTDLMYKLLRSEHLEMVAMVGIDPESDGLARARELGVKTSAEGVDGLLANPDIDIVFDATSAKAHARHAR-------LL 84 (285)
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCcccHHHHHHHHCCCCEEECCHHHHhcCCCCCEEEECCCcHHHHHHHH-------HH
Confidence 566666666643 45654 578888753 3334457654 457888875 5788999999875544433 23
Q ss_pred CCCCCEEEEcCCCC
Q psy764 75 AKPGVIVIDSSTVD 88 (286)
Q Consensus 75 l~~g~ivid~st~~ 88 (286)
+..|+.|+|.+...
T Consensus 85 l~aGk~VIdekPa~ 98 (285)
T TIGR03215 85 AELGKIVIDLTPAA 98 (285)
T ss_pred HHcCCEEEECCccc
Confidence 56789998877543
|
Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc. |
| >PRK12429 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.58 E-value=0.76 Score=38.57 Aligned_cols=75 Identities=15% Similarity=0.096 Sum_probs=46.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|.+.+|++++.+.+...- ...-.+..++..-+.++.+++.++.. +.+...+-.+|
T Consensus 16 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~~d~v 85 (258)
T PRK12429 16 IGLEIALALAKEGAKVVIADLNDEAAAAAAEAL-------QKAGGKAIGVAMDVTDEEAINAGIDY---AVETFGGVDIL 85 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHH-------HhcCCcEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 689999999999999999999988766553220 00001223444455666666666653 33333334567
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 86 i~~a~ 90 (258)
T PRK12429 86 VNNAG 90 (258)
T ss_pred EECCC
Confidence 76654
|
|
| >PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase | Back alignment and domain information |
|---|
Probab=90.49 E-value=1.7 Score=41.17 Aligned_cols=102 Identities=14% Similarity=0.142 Sum_probs=59.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcc--cCCHHHH-hhcCcEEEEecCChhHHHHHhcCCccc-cccCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANM--ALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGI-LKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~--~~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l-~~~l~ 76 (286)
+|.+++..|++.|.+|+++||+.++.+.+.+. +... ..+..+. ...+|+|+-+.|-.- ..-... ..+ ...++
T Consensus 390 agrAia~~L~~~G~~V~i~nR~~e~a~~la~~l~~~~~~~~~~~~~~~~~~diiINtT~vGm--~~~~~~-~pl~~~~l~ 466 (529)
T PLN02520 390 AGKALAYGAKEKGARVVIANRTYERAKELADAVGGQALTLADLENFHPEEGMILANTTSVGM--QPNVDE-TPISKHALK 466 (529)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHhCCceeeHhHhhhhccccCeEEEecccCCC--CCCCCC-CcccHhhCC
Confidence 57899999999999999999999998888653 2211 1222221 235677776665321 100000 001 12355
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+..+++|+.-.... + .+.+..++.|+..++
T Consensus 467 ~~~~v~D~vY~P~~-T-~ll~~A~~~G~~~~~ 496 (529)
T PLN02520 467 HYSLVFDAVYTPKI-T-RLLREAEESGAIIVS 496 (529)
T ss_pred CCCEEEEeccCCCc-C-HHHHHHHHCCCeEeC
Confidence 67889998654443 3 234455667776654
|
|
| >PRK08213 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=0.79 Score=38.67 Aligned_cols=76 Identities=14% Similarity=0.145 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|++++.+.+.+. ..+.-....++-.-+.++.+++..+.. +.+...+=+.+
T Consensus 24 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------i~~~~~~~~~~~~Dl~d~~~i~~~~~~---~~~~~~~id~v 93 (259)
T PRK08213 24 LGLQIAEALGEAGARVVLSARKAEELEEAAAH-------LEALGIDALWIAADVADEADIERLAEE---TLERFGHVDIL 93 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-------HHhcCCeEEEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 78999999999999999999998776554321 000001233344445566666665553 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 94 i~~ag~ 99 (259)
T PRK08213 94 VNNAGA 99 (259)
T ss_pred EECCCC
Confidence 776543
|
|
| >PRK07890 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.89 Score=38.21 Aligned_cols=76 Identities=11% Similarity=0.053 Sum_probs=45.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.. ...-.+...+..-+.+++.++.++.. +.+...+-+.+
T Consensus 17 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~~d~v 86 (258)
T PRK07890 17 LGRTLAVRAARAGADVVLAARTAERLDEVAAEI-------DDLGRRALAVPTDITDEDQCANLVAL---ALERFGRVDAL 86 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-------HHhCCceEEEecCCCCHHHHHHHHHH---HHHHcCCccEE
Confidence 799999999999999999999987665553221 00001223444445566666666543 33323333566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 87 i~~ag~ 92 (258)
T PRK07890 87 VNNAFR 92 (258)
T ss_pred EECCcc
Confidence 666543
|
|
| >KOG1014|consensus | Back alignment and domain information |
|---|
Probab=90.43 E-value=0.35 Score=41.85 Aligned_cols=32 Identities=22% Similarity=0.297 Sum_probs=29.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE 33 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~ 33 (286)
||.++|+-|+++|++|.+..|+++|.+..+++
T Consensus 61 IGKayA~eLAkrG~nvvLIsRt~~KL~~v~kE 92 (312)
T KOG1014|consen 61 IGKAYARELAKRGFNVVLISRTQEKLEAVAKE 92 (312)
T ss_pred chHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH
Confidence 79999999999999999999999999887653
|
|
| >PRK05568 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=90.43 E-value=6.3 Score=29.88 Aligned_cols=108 Identities=12% Similarity=0.095 Sum_probs=61.5
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChh-------HHHHHhcCCccccccCCC
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ-------DVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~-------~~~~v~~~~~~l~~~l~~ 77 (286)
.++..+.+.|++|.+++.+... . ..+.++|.|++..|... .++..+.. +... .+
T Consensus 21 ~i~~~~~~~g~~v~~~~~~~~~--------------~-~~~~~~d~iilgsp~y~~~~~~~~~~~~f~~~---~~~~-~~ 81 (142)
T PRK05568 21 LIAEGAKENGAEVKLLNVSEAS--------------V-DDVKGADVVALGSPAMGDEVLEEGEMEPFVES---ISSL-VK 81 (142)
T ss_pred HHHHHHHHCCCeEEEEECCCCC--------------H-HHHHhCCEEEEECCccCcccccchhHHHHHHH---hhhh-hC
Confidence 3444555556666666544321 1 23578999999999642 45566553 3222 24
Q ss_pred CCEEEEcCC-C--CchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEec-CCHhhHHHHHHHHHHh
Q psy764 78 GVIVIDSST-V--DPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVG-GDKSSLEKAKPILKCM 144 (286)
Q Consensus 78 g~ivid~st-~--~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~ 144 (286)
++.+.-.+| . .....+.+.+.+.+.|..++..|+ .+-+ .+++.+++++++-+.+
T Consensus 82 ~k~~~~f~t~G~~~~~~~~~~~~~l~~~g~~~~~~~~-------------~~~~~p~~~~l~~~~~~g~~l 139 (142)
T PRK05568 82 GKKLVLFGSYGWGDGEWMRDWVERMEGYGANLVNEGL-------------IVNNTPEGEGIEKCKALGEAL 139 (142)
T ss_pred CCEEEEEEccCCCCChHHHHHHHHHHHCCCEEeCCcE-------------EEecCCCHHHHHHHHHHHHHH
Confidence 554433333 2 245667788888888888776432 1112 2466777777766554
|
|
| >PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis [] | Back alignment and domain information |
|---|
Probab=90.29 E-value=0.31 Score=37.46 Aligned_cols=56 Identities=14% Similarity=0.208 Sum_probs=40.6
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHc----------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKE----------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~----------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|..+|..|...+. ++.++|+++++++..+.. .........+.+++||+|+++...
T Consensus 12 VG~~~a~~l~~~~l~~ei~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~~aDivvitag~ 79 (141)
T PF00056_consen 12 VGSTLALLLAQQGLADEIVLIDINEDKAEGEALDLSHASAPLPSPVRITSGDYEALKDADIVVITAGV 79 (141)
T ss_dssp HHHHHHHHHHHTTTSSEEEEEESSHHHHHHHHHHHHHHHHGSTEEEEEEESSGGGGTTESEEEETTST
T ss_pred HHHHHHHHHHhCCCCCceEEeccCcccceeeehhhhhhhhhcccccccccccccccccccEEEEeccc
Confidence 68899999988875 799999998765443221 123444566777899999988754
|
L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C .... |
| >PRK00066 ldh L-lactate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=90.23 E-value=1.2 Score=39.13 Aligned_cols=56 Identities=14% Similarity=0.188 Sum_probs=40.0
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHc---------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKE---------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|.++|..|+..|. ++.++|++.++++..... ......+.-+.+++||+||++-..
T Consensus 17 vG~~~a~~l~~~~~~~el~L~D~~~~~~~g~~~Dl~~~~~~~~~~~i~~~~~~~~~~adivIitag~ 83 (315)
T PRK00066 17 VGSSYAYALVNQGIADELVIIDINKEKAEGDAMDLSHAVPFTSPTKIYAGDYSDCKDADLVVITAGA 83 (315)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCchhHHHHHHHHhhccccCCeEEEeCCHHHhCCCCEEEEecCC
Confidence 78999999999887 799999998775433221 123333344567999999998754
|
|
| >TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form | Back alignment and domain information |
|---|
Probab=90.18 E-value=0.88 Score=39.79 Aligned_cols=70 Identities=20% Similarity=0.194 Sum_probs=42.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.|.-|.+.|.++.+ +-+...+.++. .. ..+.+++++++|++|+|+|+. ...+.... + ...|..|
T Consensus 13 ~G~el~rlL~~HP~-~el~~l~s~~~-------~~-~~~~~~~~~~~D~vFlalp~~-~s~~~~~~---~---~~~g~~V 76 (310)
T TIGR01851 13 TGLQIRERLSGRDD-IELLSIAPDRR-------KD-AAERAKLLNAADVAILCLPDD-AAREAVSL---V---DNPNTCI 76 (310)
T ss_pred hHHHHHHHHhCCCC-eEEEEEecccc-------cC-cCCHhHhhcCCCEEEECCCHH-HHHHHHHH---H---HhCCCEE
Confidence 57778888877643 33322221110 11 124566778999999999976 44444331 2 2468899
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.|+.
T Consensus 77 IDlSad 82 (310)
T TIGR01851 77 IDASTA 82 (310)
T ss_pred EECChH
Confidence 999973
|
This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment. |
| >PRK07825 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.17 E-value=1 Score=38.42 Aligned_cols=71 Identities=13% Similarity=-0.007 Sum_probs=45.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.- ....++..=+.++++++.++.. +.+...+=.++
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 82 (273)
T PRK07825 17 IGLATARALAALGARVAIGDLDEALAKETAAEL-----------GLVVGGPLDVTDPASFAAFLDA---VEADLGPIDVL 82 (273)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----------ccceEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999988876654321 0223333334566666666653 33222233566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 83 i~~ag 87 (273)
T PRK07825 83 VNNAG 87 (273)
T ss_pred EECCC
Confidence 66544
|
|
| >PRK05866 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=90.13 E-value=0.96 Score=39.24 Aligned_cols=76 Identities=14% Similarity=0.063 Sum_probs=46.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|+.++.+.+.+.- .+.-....++-.-+.+++++..++.. +.+...+=+++
T Consensus 52 IG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l-------~~~~~~~~~~~~Dl~d~~~v~~~~~~---~~~~~g~id~l 121 (293)
T PRK05866 52 IGEAAAEQFARRGATVVAVARREDLLDAVADRI-------TRAGGDAMAVPCDLSDLDAVDALVAD---VEKRIGGVDIL 121 (293)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------HhcCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999988776654320 00001122333344556666666653 33323333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 122 i~~AG~ 127 (293)
T PRK05866 122 INNAGR 127 (293)
T ss_pred EECCCC
Confidence 776543
|
|
| >PF13561 adh_short_C2: Enoyl-(Acyl carrier protein) reductase; PDB: 2UV8_B 3HMJ_A 2VKZ_C 1O5I_A 2P91_C 2OP0_A 2OL4_B 1NHW_A 1NNU_B 2O2Y_B | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.38 Score=40.28 Aligned_cols=72 Identities=26% Similarity=0.309 Sum_probs=46.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHH----HHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC-C
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDAS----QTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-K 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~----~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l-~ 76 (286)
||.++|+.|++.|++|++.+|+.++. +++.+.. ..+++.+-+.+++.++.++.. +.+.. .
T Consensus 8 iG~aia~~l~~~Ga~V~~~~~~~~~~~~~~~~l~~~~------------~~~~~~~D~~~~~~v~~~~~~---~~~~~~g 72 (241)
T PF13561_consen 8 IGRAIARALAEEGANVILTDRNEEKLADALEELAKEY------------GAEVIQCDLSDEESVEALFDE---AVERFGG 72 (241)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSHHHHHHHHHHHHHHT------------TSEEEESCTTSHHHHHHHHHH---HHHHHCS
T ss_pred hHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHHHc------------CCceEeecCcchHHHHHHHHH---HHhhcCC
Confidence 79999999999999999999999874 2232211 133455556677777777664 44433 3
Q ss_pred CCCEEEEcCCCC
Q psy764 77 PGVIVIDSSTVD 88 (286)
Q Consensus 77 ~g~ivid~st~~ 88 (286)
+=+++|++....
T Consensus 73 ~iD~lV~~a~~~ 84 (241)
T PF13561_consen 73 RIDILVNNAGIS 84 (241)
T ss_dssp SESEEEEEEESC
T ss_pred CeEEEEeccccc
Confidence 345666654433
|
... |
| >cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1 | Back alignment and domain information |
|---|
Probab=89.97 E-value=1.5 Score=36.68 Aligned_cols=97 Identities=20% Similarity=0.277 Sum_probs=59.6
Q ss_pred ccHHHHHHHHhCCCcEE-EEcC----------CchHHHHHHHc-C-------CcccCCHHHHh-hcCcEEEEecCChhHH
Q psy764 2 ISTLKLFFLQFQGHDVI-VYDK----------NTDASQTLAKE-G-------ANMALSLSTLA-SGAEFIISMLPASQDV 61 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~-~~dr----------~~~~~~~l~~~-g-------~~~~~s~~e~~-~~adivi~~v~~~~~~ 61 (286)
||..+++.|.+.|.+|+ +.|. +.+.+.+..+. | .... ++.++. .+|||++-|-+....-
T Consensus 42 VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~g~l~~~~~~~~~-~~~~i~~~~~Dvlip~a~~~~i~ 120 (227)
T cd01076 42 VGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPALLAYKKEHGSVLGFPGAERI-TNEELLELDCDILIPAALENQIT 120 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHhcCCcccCCCceec-CCccceeecccEEEecCccCccC
Confidence 78999999999999988 5577 66665555443 2 1111 222222 3789999888754332
Q ss_pred HHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 62 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 62 ~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
.+... .+ +=++|+..++. |-+ .+..+.+.++|+.|++-
T Consensus 121 ~~~~~-------~l-~a~~I~egAN~-~~t-~~a~~~L~~rGi~~~PD 158 (227)
T cd01076 121 ADNAD-------RI-KAKIIVEAANG-PTT-PEADEILHERGVLVVPD 158 (227)
T ss_pred HHHHh-------hc-eeeEEEeCCCC-CCC-HHHHHHHHHCCCEEECh
Confidence 23222 22 23566665544 334 56667888999988853
|
Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids |
| >PRK07024 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.96 E-value=1.1 Score=37.82 Aligned_cols=75 Identities=16% Similarity=0.079 Sum_probs=46.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.- ... .+...+-+-+.++.++++.+.. +.+...+-+++
T Consensus 14 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-~~~-------~~~~~~~~Dl~~~~~i~~~~~~---~~~~~g~id~l 82 (257)
T PRK07024 14 IGQALAREYARQGATLGLVARRTDALQAFAARL-PKA-------ARVSVYAADVRDADALAAAAAD---FIAAHGLPDVV 82 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-ccC-------CeeEEEEcCCCCHHHHHHHHHH---HHHhCCCCCEE
Confidence 799999999999999999999988776654321 000 0233344445556666666543 33323333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 83 v~~ag~ 88 (257)
T PRK07024 83 IANAGI 88 (257)
T ss_pred EECCCc
Confidence 776543
|
|
| >PRK05867 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.95 E-value=0.85 Score=38.37 Aligned_cols=76 Identities=17% Similarity=0.132 Sum_probs=45.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. ..+.-.+...+..-+.++.++++.+.. +.+...+=+++
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~l 90 (253)
T PRK05867 21 IGKRVALAYVEAGAQVAIAARHLDALEKLADE-------IGTSGGKVVPVCCDVSQHQQVTSMLDQ---VTAELGGIDIA 90 (253)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-------HHhcCCeEEEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 79999999999999999999998876655432 000001122233335566666666543 33323233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 91 v~~ag~ 96 (253)
T PRK05867 91 VCNAGI 96 (253)
T ss_pred EECCCC
Confidence 666543
|
|
| >PRK07067 sorbitol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.88 E-value=1.1 Score=37.80 Aligned_cols=72 Identities=11% Similarity=0.016 Sum_probs=45.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|.+.+|+.++.+.+.+.- -.....+-.-+.++.+++.++.. +.+...+=+.+
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 84 (257)
T PRK07067 18 IGEAVAERYLAEGARVVIADIKPARARLAALEI----------GPAAIAVSLDVTRQDSIDRIVAA---AVERFGGIDIL 84 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh----------CCceEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 699999999999999999999988776654321 00122233334556666666553 33333334567
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 85 i~~ag 89 (257)
T PRK07067 85 FNNAA 89 (257)
T ss_pred EECCC
Confidence 76654
|
|
| >TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain | Back alignment and domain information |
|---|
Probab=89.86 E-value=2.7 Score=34.48 Aligned_cols=100 Identities=15% Similarity=0.146 Sum_probs=58.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-HHHHHHHcC-CcccC-C-HHHHhhcCcEEEEecCChhHHHHHhcC----------
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-ASQTLAKEG-ANMAL-S-LSTLASGAEFIISMLPASQDVLDAYDG---------- 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~-s-~~e~~~~adivi~~v~~~~~~~~v~~~---------- 67 (286)
+|..-++.|++.|.+|++++.+.. ..+.+.+.| +.... + ..+.++++++||.|..++.--..+...
T Consensus 20 va~rk~~~Ll~~ga~VtVvsp~~~~~l~~l~~~~~i~~~~~~~~~~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~ 99 (205)
T TIGR01470 20 VALRKARLLLKAGAQLRVIAEELESELTLLAEQGGITWLARCFDADILEGAFLVIAATDDEELNRRVAHAARARGVPVNV 99 (205)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCCHHHHHHHHcCCEEEEeCCCCHHHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEE
Confidence 355667889999999999987653 345565553 32211 1 134567999999998876322222210
Q ss_pred ---C---ccccc-cCCCCCEEEEcCC--CCchHHHHHHHHHHh
Q psy764 68 ---S---DGILK-HAKPGVIVIDSST--VDPQVPQTLSNLARE 101 (286)
Q Consensus 68 ---~---~~l~~-~l~~g~ivid~st--~~p~~~~~~~~~~~~ 101 (286)
+ +-+.+ ....|.+.|-.|| .+|..++++.+.+++
T Consensus 100 ~d~~e~~~f~~pa~~~~g~l~iaisT~G~sP~la~~lr~~ie~ 142 (205)
T TIGR01470 100 VDDPELCSFIFPSIVDRSPVVVAISSGGAAPVLARLLRERIET 142 (205)
T ss_pred CCCcccCeEEEeeEEEcCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 0 00111 1345666665554 478888777777655
|
This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms. |
| >PRK07109 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=0.96 Score=40.09 Aligned_cols=76 Identities=14% Similarity=0.187 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. ..+.-.+..++..=+.++++++.++.. +.+...+=+++
T Consensus 20 IG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~-------l~~~g~~~~~v~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 89 (334)
T PRK07109 20 VGRATARAFARRGAKVVLLARGEEGLEALAAE-------IRAAGGEALAVVADVADAEAVQAAADR---AEEELGPIDTW 89 (334)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHcCCcEEEEEecCCCHHHHHHHHHH---HHHHCCCCCEE
Confidence 79999999999999999999998876655331 000001122233344566667766653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 90 InnAg~ 95 (334)
T PRK07109 90 VNNAMV 95 (334)
T ss_pred EECCCc
Confidence 776543
|
|
| >PRK06124 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.84 E-value=1.2 Score=37.50 Aligned_cols=75 Identities=16% Similarity=0.114 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+.+.+. .++.-.+.+.+..-+.++.++..++.+ +.....+=..+
T Consensus 23 IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~v 92 (256)
T PRK06124 23 LGFEIARALAGAGAHVLVNGRNAATLEAAVAA-------LRAAGGAAEALAFDIADEEAVAAAFAR---IDAEHGRLDIL 92 (256)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHH-------HHhcCCceEEEEccCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 78999999999999999999998766554321 111001233444445666666666653 33322233456
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|.+..
T Consensus 93 i~~ag 97 (256)
T PRK06124 93 VNNVG 97 (256)
T ss_pred EECCC
Confidence 66544
|
|
| >PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function | Back alignment and domain information |
|---|
Probab=89.73 E-value=0.077 Score=41.17 Aligned_cols=91 Identities=19% Similarity=0.139 Sum_probs=51.8
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCCh--hHHHHHhcCCccccccCCCCCEEE
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPAS--QDVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~--~~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
++...|.+.+++|.++|++++....- .+........+++.+||+|++.-.+= ..++.++ ...++++.++
T Consensus 22 P~~~~l~~~~~~v~v~d~~~~~~~~~--~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL-------~~~~~~~~vi 92 (147)
T PF04016_consen 22 PLVEKLKERGAEVRVFDLNPDNIGEE--PGDVPDEDAEEILPWADVVIITGSTLVNGTIDDIL-------ELARNAREVI 92 (147)
T ss_dssp CCHHHHCCCCSEEEEEESSGGG--SS--CT-EEGGGHHHHGGG-SEEEEECHHCCTTTHHHHH-------HHTTTSSEEE
T ss_pred HHHHHHhcCCCCEEEEECCCCCCCCC--CCcCCHHHHHHHHccCCEEEEEeeeeecCCHHHHH-------HhCccCCeEE
Confidence 57788888899999999999754321 12224456778899999998764310 1234443 3344556666
Q ss_pred EcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 83 DSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 83 d~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
-.....|-.. +.+...|+.++.
T Consensus 93 l~GpS~~~~P----~~l~~~Gv~~v~ 114 (147)
T PF04016_consen 93 LYGPSAPLHP----EALFDYGVTYVG 114 (147)
T ss_dssp EESCCGGS-G----GGGCCTT-SEEE
T ss_pred EEecCchhhH----HHHHhCCCCEEE
Confidence 5555444322 123455666664
|
; PDB: 3L5O_B 3NPG_A. |
| >COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=89.68 E-value=1 Score=36.88 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|.+.|.+|++..|+.++.++..+..-.... .++=|.|.+..+++++. +...-+.=.++
T Consensus 17 IGl~lak~f~elgN~VIi~gR~e~~L~e~~~~~p~~~t-----------~v~Dv~d~~~~~~lvew---Lkk~~P~lNvl 82 (245)
T COG3967 17 IGLALAKRFLELGNTVIICGRNEERLAEAKAENPEIHT-----------EVCDVADRDSRRELVEW---LKKEYPNLNVL 82 (245)
T ss_pred hhHHHHHHHHHhCCEEEEecCcHHHHHHHHhcCcchhe-----------eeecccchhhHHHHHHH---HHhhCCchhee
Confidence 79999999999999999999999998877654322211 12224445556666653 33333333566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++..+
T Consensus 83 iNNAGI 88 (245)
T COG3967 83 INNAGI 88 (245)
T ss_pred eecccc
Confidence 666554
|
|
| >PRK08862 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.2 Score=37.02 Aligned_cols=75 Identities=12% Similarity=0.136 Sum_probs=45.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC-CCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK-PGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~-~g~i 80 (286)
||.++++.|++.|++|.+.+|++++.+++.+. + .+.-.+.-.+.+-+.++.+++.++.. +.+.+. +=++
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~-i------~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~~iD~ 86 (227)
T PRK08862 17 LGRTISCHFARLGATLILCDQDQSALKDTYEQ-C------SALTDNVYSFQLKDFSQESIRHLFDA---IEQQFNRAPDV 86 (227)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-H------HhcCCCeEEEEccCCCHHHHHHHHHH---HHHHhCCCCCE
Confidence 79999999999999999999999887665432 0 00000111122235667777776653 333222 2356
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
+|+...
T Consensus 87 li~nag 92 (227)
T PRK08862 87 LVNNWT 92 (227)
T ss_pred EEECCc
Confidence 676653
|
|
| >PRK07814 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.56 E-value=1 Score=38.19 Aligned_cols=75 Identities=11% Similarity=0.131 Sum_probs=45.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. ..+.-.+..++-.-+.++.+++.++.. +.+...+=+++
T Consensus 22 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~v 91 (263)
T PRK07814 22 LGAAIALAFAEAGADVLIAARTESQLDEVAEQ-------IRAAGRRAHVVAADLAHPEATAGLAGQ---AVEAFGRLDIV 91 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998776655432 000001122333445666667666653 33323333577
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 92 i~~Ag 96 (263)
T PRK07814 92 VNNVG 96 (263)
T ss_pred EECCC
Confidence 77653
|
|
| >PRK07478 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.53 E-value=1.1 Score=37.70 Aligned_cols=76 Identities=11% Similarity=0.031 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. +.+.-.+..++..-+.++.+++.++.. +.+...+=+.+
T Consensus 18 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 87 (254)
T PRK07478 18 IGRAAAKLFAREGAKVVVGARRQAELDQLVAE-------IRAEGGEAVALAGDVRDEAYAKALVAL---AVERFGGLDIA 87 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 78999999999999999999998876655322 000001122233334555566665543 33322233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 88 i~~ag~ 93 (254)
T PRK07478 88 FNNAGT 93 (254)
T ss_pred EECCCC
Confidence 666544
|
|
| >PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.51 E-value=1.4 Score=40.63 Aligned_cols=56 Identities=18% Similarity=0.236 Sum_probs=39.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc-hHH----HHHHHcCCccc--CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT-DAS----QTLAKEGANMA--LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~-~~~----~~l~~~g~~~~--~s~~e~~~~adivi~~v~~ 57 (286)
+|.++|+.|++.|++|+++|++. +.. +++.+.|+.+. +...+...++|+||.+...
T Consensus 16 ~G~~~A~~l~~~G~~V~~~d~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~vv~~~g~ 78 (450)
T PRK14106 16 SGLALAKFLKKLGAKVILTDEKEEDQLKEALEELGELGIELVLGEYPEEFLEGVDLVVVSPGV 78 (450)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHHHhcCCEEEeCCcchhHhhcCCEEEECCCC
Confidence 58899999999999999999975 333 33444465432 2334556789999988653
|
|
| >PRK08300 acetaldehyde dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.7 Score=37.84 Aligned_cols=80 Identities=15% Similarity=0.151 Sum_probs=52.8
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHH--HHHHHcCCcc-cCCHHHHhh-----cCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDAS--QTLAKEGANM-ALSLSTLAS-----GAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~--~~l~~~g~~~-~~s~~e~~~-----~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||+.+...+.+. +.++. ++|+++++. +...+.|+.. +++.+++++ +.|+||.+.|.....+...
T Consensus 15 IGt~hm~~l~~~~~velvAVvdid~es~gla~A~~~Gi~~~~~~ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~------ 88 (302)
T PRK08300 15 IGTDLMIKILRSEHLEPGAMVGIDPESDGLARARRLGVATSAEGIDGLLAMPEFDDIDIVFDATSAGAHVRHAA------ 88 (302)
T ss_pred HHHHHHHHHhcCCCcEEEEEEeCChhhHHHHHHHHcCCCcccCCHHHHHhCcCCCCCCEEEECCCHHHHHHHHH------
Confidence 566666667654 44544 679988642 3344568765 478898885 5888999999754433322
Q ss_pred cccCCCCCEEEEcCCCC
Q psy764 72 LKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~ 88 (286)
.....|+.+||.+...
T Consensus 89 -~a~eaGk~VID~sPA~ 104 (302)
T PRK08300 89 -KLREAGIRAIDLTPAA 104 (302)
T ss_pred -HHHHcCCeEEECCccc
Confidence 2345789999988654
|
|
| >TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase | Back alignment and domain information |
|---|
Probab=89.49 E-value=1.1 Score=37.83 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=27.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
||..+++.|+++|++|.+.+|+.++.+.+.+
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~l~~ 47 (262)
T TIGR03325 17 LGRAIVDRFVAEGARVAVLDKSAAGLQELEA 47 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 7999999999999999999999887776643
|
Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase. |
| >PRK10538 malonic semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=89.45 E-value=1.2 Score=37.42 Aligned_cols=72 Identities=11% Similarity=0.064 Sum_probs=45.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|.+.+|++++.+.+.+.- -.+..++-.-+.++.+++.++.. +.+...+-+.+
T Consensus 12 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~i~~~~~~---~~~~~~~id~v 78 (248)
T PRK10538 12 FGECITRRFIQQGHKVIATGRRQERLQELKDEL----------GDNLYIAQLDVRNRAAIEEMLAS---LPAEWRNIDVL 78 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------ccceEEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 689999999999999999999988776654320 01233334445666666666653 33333334566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|.+..
T Consensus 79 i~~ag 83 (248)
T PRK10538 79 VNNAG 83 (248)
T ss_pred EECCC
Confidence 66554
|
|
| >PRK07074 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.43 E-value=1.4 Score=37.07 Aligned_cols=74 Identities=12% Similarity=0.061 Sum_probs=46.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..++..|+++|++|++.+|++++.+.+.+.- .. ....++-.-+.+..++...+.. +.....+=+.+
T Consensus 14 iG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~---~~------~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 81 (257)
T PRK07074 14 IGQALARRFLAAGDRVLALDIDAAALAAFADAL---GD------ARFVPVACDLTDAASLAAALAN---AAAERGPVDVL 81 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh---cC------CceEEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999988776664321 00 1233444556666666555542 32222223567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 82 i~~ag~ 87 (257)
T PRK07074 82 VANAGA 87 (257)
T ss_pred EECCCC
Confidence 766654
|
|
| >PRK07454 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.42 E-value=1.2 Score=37.07 Aligned_cols=76 Identities=17% Similarity=0.201 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|++.+|++++.+.+.+. ..+.-.+..++..=+.++..+..++.. +.+...+=+.+
T Consensus 18 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 87 (241)
T PRK07454 18 IGKATALAFAKAGWDLALVARSQDALEALAAE-------LRSTGVKAAAYSIDLSNPEAIAPGIAE---LLEQFGCPDVL 87 (241)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhCCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998776554332 011001222333334455555555542 33222233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 88 v~~ag~ 93 (241)
T PRK07454 88 INNAGM 93 (241)
T ss_pred EECCCc
Confidence 766543
|
|
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=89.39 E-value=2.1 Score=35.83 Aligned_cols=79 Identities=23% Similarity=0.271 Sum_probs=51.0
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHH----HcCCc---ccCCHHHHhh---cCcEEEEe-----cCChhHHHHHhcC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLA----KEGAN---MALSLSTLAS---GAEFIISM-----LPASQDVLDAYDG 67 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~----~~g~~---~~~s~~e~~~---~adivi~~-----v~~~~~~~~v~~~ 67 (286)
|+.|+..|++.|.+|++.|.+++.++... +.|+. ...+.+|+.. .-|+|+++ ||+|+.+ +..
T Consensus 70 gG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp~~~---~~~ 146 (243)
T COG2227 70 GGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCMEVLEHVPDPESF---LRA 146 (243)
T ss_pred ccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhhHHHccCCHHHH---HHH
Confidence 56889999999999999999988766543 22443 2334556654 56777654 5776543 322
Q ss_pred CccccccCCCCCEEEEcCCCC
Q psy764 68 SDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~~ 88 (286)
..+.++||.+++. ||+.
T Consensus 147 ---c~~lvkP~G~lf~-STin 163 (243)
T COG2227 147 ---CAKLVKPGGILFL-STIN 163 (243)
T ss_pred ---HHHHcCCCcEEEE-eccc
Confidence 3345677765554 5655
|
|
| >PRK14874 aspartate-semialdehyde dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.39 E-value=0.41 Score=42.51 Aligned_cols=79 Identities=19% Similarity=0.145 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcE---EEEcCCchHHHHHHHcC--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGHDV---IVYDKNTDASQTLAKEG--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V---~~~dr~~~~~~~l~~~g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+|..+.+.|.++||++ ....++.+.-+.+.-.| +...+...+..+++|+||+|+|.. ..+++... .+.
T Consensus 13 vG~~l~~lL~~~~hp~~~l~~l~s~~~~g~~l~~~g~~i~v~d~~~~~~~~vDvVf~A~g~g-~s~~~~~~------~~~ 85 (334)
T PRK14874 13 VGREMLNILEERNFPVDKLRLLASARSAGKELSFKGKELKVEDLTTFDFSGVDIALFSAGGS-VSKKYAPK------AAA 85 (334)
T ss_pred HHHHHHHHHHhCCCCcceEEEEEccccCCCeeeeCCceeEEeeCCHHHHcCCCEEEECCChH-HHHHHHHH------HHh
Confidence 6888999999988853 55544433222222112 222221223347899999999975 44554432 234
Q ss_pred CCCEEEEcCCC
Q psy764 77 PGVIVIDSSTV 87 (286)
Q Consensus 77 ~g~ivid~st~ 87 (286)
.|..|||.|+.
T Consensus 86 ~G~~VIDlS~~ 96 (334)
T PRK14874 86 AGAVVIDNSSA 96 (334)
T ss_pred CCCEEEECCch
Confidence 67899999874
|
|
| >PRK05993 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=89.31 E-value=1.3 Score=38.00 Aligned_cols=52 Identities=17% Similarity=0.132 Sum_probs=37.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
+|..+++.|++.|++|++.+|++++.+.+.+.+ .+++..-+.++.+++.++.
T Consensus 16 iG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~~~-------------~~~~~~Dl~d~~~~~~~~~ 67 (277)
T PRK05993 16 IGAYCARALQSDGWRVFATCRKEEDVAALEAEG-------------LEAFQLDYAEPESIAALVA 67 (277)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCC-------------ceEEEccCCCHHHHHHHHH
Confidence 789999999999999999999988877665432 2334444555666666554
|
|
| >PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=89.26 E-value=0.55 Score=43.06 Aligned_cols=57 Identities=16% Similarity=0.092 Sum_probs=37.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
+|.++|+.|.+.|++|+++|++++.........-....+.....+++|++|.+.+.+
T Consensus 14 ~G~slA~~l~~~G~~V~g~D~~~~~~~~~~~~~~~~~~~~~~~~~~~dlvV~s~gi~ 70 (418)
T PRK00683 14 TGKSIARFLAQKGVYVIGVDKSLEALQSCPYIHERYLENAEEFPEQVDLVVRSPGIK 70 (418)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccccchhHHHhhhhcCCcHHHhcCCCEEEECCCCC
Confidence 688999999999999999998876432211000011233444557899988887543
|
|
| >PRK08643 acetoin reductase; Validated | Back alignment and domain information |
|---|
Probab=89.07 E-value=1.2 Score=37.45 Aligned_cols=76 Identities=20% Similarity=0.164 Sum_probs=45.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+++... +.+.-.+...+-.-+.++..+++++.. +.+...+=+.+
T Consensus 14 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~v 83 (256)
T PRK08643 14 IGFAIAKRLVEDGFKVAIVDYNEETAQAAADK-------LSKDGGKAIAVKADVSDRDQVFAAVRQ---VVDTFGDLNVV 83 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCeEEEEECCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998776555332 000001112222335666666666653 33323333567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 84 i~~ag~ 89 (256)
T PRK08643 84 VNNAGV 89 (256)
T ss_pred EECCCC
Confidence 776654
|
|
| >PRK06270 homoserine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.99 E-value=4.6 Score=35.97 Aligned_cols=99 Identities=19% Similarity=0.268 Sum_probs=54.5
Q ss_pred ccHHHHHHHHhC--------C--CcE-EEEcCC----------chHHHHHHHc-CC-c------ccCCHHHHhh--cCcE
Q psy764 2 ISTLKLFFLQFQ--------G--HDV-IVYDKN----------TDASQTLAKE-GA-N------MALSLSTLAS--GAEF 50 (286)
Q Consensus 2 ~G~~lA~~L~~~--------G--~~V-~~~dr~----------~~~~~~l~~~-g~-~------~~~s~~e~~~--~adi 50 (286)
||+.+++.|.++ | .+| .++|++ .+++..+.+. +. . ...++.++++ +.|+
T Consensus 13 VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~~~~~~~~~~~~d~~ell~~~~~Dv 92 (341)
T PRK06270 13 VGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGKLADYPEGGGEISGLEVIRSVDADV 92 (341)
T ss_pred HHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCCcccCccccccCCHHHHhhccCCCE
Confidence 688888888765 3 453 355753 3333344332 21 1 1247788874 6799
Q ss_pred EEEecCChhH----HHHHhcCCccccccCCCCCEEEEcCCCCch--HHHHHHHHHHhcCCceE
Q psy764 51 IISMLPASQD----VLDAYDGSDGILKHAKPGVIVIDSSTVDPQ--VPQTLSNLAREKQITFL 107 (286)
Q Consensus 51 vi~~v~~~~~----~~~v~~~~~~l~~~l~~g~ivid~st~~p~--~~~~~~~~~~~~g~~~~ 107 (286)
|+.|.|+... ..+. +...+..|+-||-.+. .|. ...++.+..+++|..+.
T Consensus 93 Vvd~T~s~~~~~~~a~~~------~~~aL~~GkhVVtaNK-~pla~~~~eL~~~A~~~g~~~~ 148 (341)
T PRK06270 93 VVEATPTNIETGEPALSH------CRKALERGKHVVTSNK-GPLALAYKELKELAKKNGVRFR 148 (341)
T ss_pred EEECCcCcccccchHHHH------HHHHHHCCCEEEcCCc-HHHHhhHHHHHHHHHHcCCEEE
Confidence 9999986322 1222 2234567777774432 222 34566666666666543
|
|
| >PRK13394 3-hydroxybutyrate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.97 E-value=1.2 Score=37.54 Aligned_cols=76 Identities=17% Similarity=0.163 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+++.+. ..+.-....++..-+.++..+++++.. +.+...+-..+
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~~d~v 88 (262)
T PRK13394 19 IGKEIALELARAGAAVAIADLNQDGANAVADE-------INKAGGKAIGVAMDVTNEDAVNAGIDK---VAERFGSVDIL 88 (262)
T ss_pred HHHHHHHHHHHCCCeEEEEeCChHHHHHHHHH-------HHhcCceEEEEECCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998776555432 000000112222334555566665543 33223344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 89 i~~ag~ 94 (262)
T PRK13394 89 VSNAGI 94 (262)
T ss_pred EECCcc
Confidence 777654
|
|
| >PRK05872 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.96 E-value=1.7 Score=37.74 Aligned_cols=72 Identities=14% Similarity=0.132 Sum_probs=46.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. +. ..+++. .-+.+..+++.++.. +.+...+=
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~-----------~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~i 86 (296)
T PRK05872 21 IGAELARRLHARGAKLALVDLEEAELAALAAELGG-----------DDRVLTVVADVTDLAAMQAAAEE---AVERFGGI 86 (296)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC-----------CCcEEEEEecCCCHHHHHHHHHH---HHHHcCCC
Confidence 79999999999999999999998887766442 10 122332 445666667766653 33333333
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
+++|++..+
T Consensus 87 d~vI~nAG~ 95 (296)
T PRK05872 87 DVVVANAGI 95 (296)
T ss_pred CEEEECCCc
Confidence 566666543
|
|
| >PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated | Back alignment and domain information |
|---|
Probab=88.93 E-value=1.4 Score=36.54 Aligned_cols=74 Identities=22% Similarity=0.316 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|..+++.|+++|++|.+.+|++++.+.+... ..+ ..+++.+ .=+.++..+..++.+ +.+...+-+
T Consensus 17 iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id 84 (246)
T PRK05653 17 IGRAIALRLAADGAKVVIYDSNEEAAEALAAE-------LRA--AGGEARVLVFDVSDEAAVRALIEA---AVEAFGALD 84 (246)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhHHHHHHHH-------HHh--cCCceEEEEccCCCHHHHHHHHHH---HHHHhCCCC
Confidence 68999999999999999999998776544321 001 1122222 334455556666543 333233335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
.||++...
T Consensus 85 ~vi~~ag~ 92 (246)
T PRK05653 85 ILVNNAGI 92 (246)
T ss_pred EEEECCCc
Confidence 67766543
|
|
| >TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase | Back alignment and domain information |
|---|
Probab=88.91 E-value=1.1 Score=40.92 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=48.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEE
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVID 83 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid 83 (286)
..+++.|.+.|.+|.+||....... .. ....+.++.++++++|+|+++..++ ..+++-. +.+.+.+ +..+|+|
T Consensus 336 ~~~~~~L~~~g~~v~~~DP~~~~~~-~~--~~~~~~~~~~~~~~ad~~v~~t~~~-~~~~~~~--~~~~~~~-~~~~v~D 408 (411)
T TIGR03026 336 LDIIELLKEKGAKVKAYDPLVPEEE-VK--GLPLIDDLEEALKGADALVILTDHD-EFKDLDL--EKIKDLM-KGKVVVD 408 (411)
T ss_pred HHHHHHHHhCCCEEEEECCCCChhh-hh--hcccCCCHHHHHhCCCEEEEecCCH-HHhccCH--HHHHHhc-CCCEEEe
Confidence 3578899999999999998643321 11 1223578889999999999999975 4443211 0122222 3457888
Q ss_pred c
Q psy764 84 S 84 (286)
Q Consensus 84 ~ 84 (286)
+
T Consensus 409 ~ 409 (411)
T TIGR03026 409 T 409 (411)
T ss_pred C
Confidence 5
|
All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively. |
| >PTZ00082 L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.88 E-value=1.6 Score=38.51 Aligned_cols=53 Identities=17% Similarity=0.315 Sum_probs=38.1
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHH--HH---HH---cC----CcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQ--TL---AK---EG----ANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~--~l---~~---~g----~~~~~s~~e~~~~adivi~~v 55 (286)
||+.+|..++..|+ +|.++|+++++.+ .+ .. .+ +..+.+. +.+++||+||++.
T Consensus 17 vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ta 82 (321)
T PTZ00082 17 IGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIVTA 82 (321)
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEECC
Confidence 78999999999996 8999999988542 11 11 11 2333566 5679999999977
|
|
| >PRK12829 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.84 E-value=1.4 Score=37.19 Aligned_cols=75 Identities=12% Similarity=0.070 Sum_probs=44.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|++.+|+++..+.+.+..... +..++..=+.++..+..++.. +.+.+.+-+.|
T Consensus 23 iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~---------~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 90 (264)
T PRK12829 23 IGRAIAEAFAEAGARVHVCDVSEAALAATAARLPGA---------KVTATVADVADPAQVERVFDT---AVERFGGLDVL 90 (264)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhcC---------ceEEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 789999999999999999999987766554321100 112233334455555555543 22223344666
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|++....
T Consensus 91 i~~ag~~ 97 (264)
T PRK12829 91 VNNAGIA 97 (264)
T ss_pred EECCCCC
Confidence 6665443
|
|
| >PRK06196 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.81 E-value=1.3 Score=38.72 Aligned_cols=71 Identities=18% Similarity=0.188 Sum_probs=43.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+.+.+. + .+..++-.=+.+..+++.++.. +.....+=+++
T Consensus 38 IG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~-l----------~~v~~~~~Dl~d~~~v~~~~~~---~~~~~~~iD~l 103 (315)
T PRK06196 38 LGLETTRALAQAGAHVIVPARRPDVAREALAG-I----------DGVEVVMLDLADLESVRAFAER---FLDSGRRIDIL 103 (315)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-h----------hhCeEEEccCCCHHHHHHHHHH---HHhcCCCCCEE
Confidence 79999999999999999999998876655332 0 1123333345555566665543 22222223455
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 104 i~nAg 108 (315)
T PRK06196 104 INNAG 108 (315)
T ss_pred EECCC
Confidence 65543
|
|
| >PRK07523 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.60 E-value=1.4 Score=37.11 Aligned_cols=76 Identities=17% Similarity=0.126 Sum_probs=44.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|.+.+|++++.+.+.+. +.+.-.+...+-.=+.++.+++.++.. +.....+=+.+
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------i~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~l 91 (255)
T PRK07523 22 IGYALAEGLAQAGAEVILNGRDPAKLAAAAES-------LKGQGLSAHALAFDVTDHDAVRAAIDA---FEAEIGPIDIL 91 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-------HHhcCceEEEEEccCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 79999999999999999999998766554321 111000122232334555666666553 33323334566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 92 i~~ag~ 97 (255)
T PRK07523 92 VNNAGM 97 (255)
T ss_pred EECCCC
Confidence 665543
|
|
| >PRK08340 glucose-1-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.51 E-value=1.3 Score=37.35 Aligned_cols=74 Identities=12% Similarity=0.011 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|+++|++|.+.+|++++.+.+.+.- . +. .+...+-.-+.++.+++.++.. +.+...+=+++
T Consensus 12 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l-~------~~-~~~~~~~~Dv~d~~~~~~~~~~---~~~~~g~id~l 80 (259)
T PRK08340 12 IGFNVARELLKKGARVVISSRNEENLEKALKEL-K------EY-GEVYAVKADLSDKDDLKNLVKE---AWELLGGIDAL 80 (259)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-H------hc-CCceEEEcCCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 799999999999999999999987765553320 0 00 1122333345566667766653 33323333566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|+...
T Consensus 81 i~naG 85 (259)
T PRK08340 81 VWNAG 85 (259)
T ss_pred EECCC
Confidence 66544
|
|
| >PRK08267 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.48 E-value=1.6 Score=36.78 Aligned_cols=74 Identities=15% Similarity=0.061 Sum_probs=46.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc-CCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH-AKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~-l~~g~i 80 (286)
||..+++.|+++|++|.+.+|++++.+.+...- . . ....++..-+.+..+++.++.+ +.+. ..+=++
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-~--~------~~~~~~~~D~~~~~~v~~~~~~---~~~~~~~~id~ 80 (260)
T PRK08267 13 IGRATALLFAAEGWRVGAYDINEAGLAALAAEL-G--A------GNAWTGALDVTDRAAWDAALAD---FAAATGGRLDV 80 (260)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHh-c--C------CceEEEEecCCCHHHHHHHHHH---HHHHcCCCCCE
Confidence 789999999999999999999998877664421 0 0 1233444445666666666543 2221 122356
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 81 vi~~ag~ 87 (260)
T PRK08267 81 LFNNAGI 87 (260)
T ss_pred EEECCCC
Confidence 7766544
|
|
| >PTZ00187 succinyl-CoA synthetase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=88.43 E-value=3.7 Score=36.07 Aligned_cols=97 Identities=8% Similarity=0.076 Sum_probs=57.8
Q ss_pred cHHHHHHHHhCCCcE-EEEcCCc--hHHHHHHHcCCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDV-IVYDKNT--DASQTLAKEGANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V-~~~dr~~--~~~~~l~~~g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
|+..++...+.|-+| -+.+... +... ..|+.++++..|+.+. .|+.+++||.+.....+.+. .+ ..-
T Consensus 42 g~~h~~~~~~ygt~iv~GV~Pgkgg~~v~---~~Gvpvy~sv~ea~~~~~~D~avI~VPa~~v~dai~Ea----~~-aGI 113 (317)
T PTZ00187 42 GTFHTEQAIEYGTKMVGGVNPKKAGTTHL---KHGLPVFATVKEAKKATGADASVIYVPPPHAASAIIEA----IE-AEI 113 (317)
T ss_pred HHHHHHHHHHhCCcEEEEECCCCCCceEe---cCCccccCCHHHHhcccCCCEEEEecCHHHHHHHHHHH----HH-cCC
Confidence 556667777777754 3455544 2221 1378899999999987 99999999965444444432 11 111
Q ss_pred CCEEEEcCCCCchHHHHHHHHHH-hcCCceE
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAR-EKQITFL 107 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~-~~g~~~~ 107 (286)
..+||-++........++.+.+. ++|.+++
T Consensus 114 ~~~ViiteGfpe~d~~~l~~~~~~~~g~rli 144 (317)
T PTZ00187 114 PLVVCITEGIPQHDMVKVKHALLSQNKTRLI 144 (317)
T ss_pred CEEEEECCCCchhhHHHHHHHHhhcCCCEEE
Confidence 23455555555544556655554 3566655
|
|
| >PRK05876 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.42 E-value=1.4 Score=37.75 Aligned_cols=76 Identities=11% Similarity=0.069 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|+++|++|.+.+|++++.+++.+. +...-.+...+-.-+.++.+++.++.. +.+...+=+++
T Consensus 18 IG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~id~l 87 (275)
T PRK05876 18 IGLATGTEFARRGARVVLGDVDKPGLRQAVNH-------LRAEGFDVHGVMCDVRHREEVTHLADE---AFRLLGHVDVV 87 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCeEEEEeCCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998766554321 000000122233344566667666653 33323333567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+....
T Consensus 88 i~nAg~ 93 (275)
T PRK05876 88 FSNAGI 93 (275)
T ss_pred EECCCc
Confidence 776543
|
|
| >PRK07063 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.37 E-value=1.4 Score=37.18 Aligned_cols=78 Identities=12% Similarity=0.057 Sum_probs=46.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.--.... -.+..++..-+.++.+++.++.. +.+...+=+.+
T Consensus 19 IG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~g~id~l 90 (260)
T PRK07063 19 IGAAIARAFAREGAAVALADLDAALAERAAAAIARDVA-----GARVLAVPADVTDAASVAAAVAA---AEEAFGPLDVL 90 (260)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccC-----CceEEEEEccCCCHHHHHHHHHH---HHHHhCCCcEE
Confidence 79999999999999999999998876655432100000 01122333345566666666653 33333333567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 91 i~~ag~ 96 (260)
T PRK07063 91 VNNAGI 96 (260)
T ss_pred EECCCc
Confidence 776543
|
|
| >TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms) | Back alignment and domain information |
|---|
Probab=88.36 E-value=0.37 Score=42.88 Aligned_cols=78 Identities=18% Similarity=0.202 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcE---EEEcCCchHHHHHHHcC--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGHDV---IVYDKNTDASQTLAKEG--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V---~~~dr~~~~~~~l~~~g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+|..+.+.|.+++|++ ..+.++.+.-+.+.-.| ....+-..+.++++|++|.|.|.. ..+++.. ..+.
T Consensus 11 vG~eLi~lL~~~~hp~~~l~~~as~~~~g~~~~~~~~~~~~~~~~~~~~~~~D~v~~a~g~~-~s~~~a~------~~~~ 83 (339)
T TIGR01296 11 VGQEMLKILEERNFPIDKLVLLASDRSAGRKVTFKGKELEVNEAKIESFEGIDIALFSAGGS-VSKEFAP------KAAK 83 (339)
T ss_pred HHHHHHHHHHhCCCChhhEEEEeccccCCCeeeeCCeeEEEEeCChHHhcCCCEEEECCCHH-HHHHHHH------HHHH
Confidence 6889999999988863 34434333222222122 222221234458999999999975 4444433 1234
Q ss_pred CCCEEEEcCC
Q psy764 77 PGVIVIDSST 86 (286)
Q Consensus 77 ~g~ivid~st 86 (286)
.|..|||.|+
T Consensus 84 ~G~~VID~ss 93 (339)
T TIGR01296 84 CGAIVIDNTS 93 (339)
T ss_pred CCCEEEECCH
Confidence 6788999986
|
Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978. |
| >PRK06179 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.36 E-value=1.1 Score=38.10 Aligned_cols=68 Identities=18% Similarity=0.192 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|++++.+.. .+..++..=+.++.+++.++.. +.+...+-+++
T Consensus 16 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~---------------~~~~~~~~D~~d~~~~~~~~~~---~~~~~g~~d~l 77 (270)
T PRK06179 16 IGRATAEKLARAGYRVFGTSRNPARAAPI---------------PGVELLELDVTDDASVQAAVDE---VIARAGRIDVL 77 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhhcccc---------------CCCeeEEeecCCHHHHHHHHHH---HHHhCCCCCEE
Confidence 79999999999999999999987654211 1233444455666677776653 43333444677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 78 i~~ag~ 83 (270)
T PRK06179 78 VNNAGV 83 (270)
T ss_pred EECCCC
Confidence 777654
|
|
| >TIGR02415 23BDH acetoin reductases | Back alignment and domain information |
|---|
Probab=88.30 E-value=1.4 Score=36.86 Aligned_cols=76 Identities=20% Similarity=0.101 Sum_probs=45.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+++|++++.+.+.+.- .+.-.+..++..=+.++.++..++.. +.+...+-..+
T Consensus 12 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~l-------~~~~~~~~~~~~Dl~~~~~i~~~~~~---~~~~~~~id~v 81 (254)
T TIGR02415 12 IGKGIAERLAKDGFAVAVADLNEETAKETAKEI-------NQAGGKAVAYKLDVSDKDQVFSAIDQ---AAEKFGGFDVM 81 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------HhcCCeEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999876655443210 00001222333345666677666653 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 82 i~~ag~ 87 (254)
T TIGR02415 82 VNNAGV 87 (254)
T ss_pred EECCCc
Confidence 777654
|
One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733). |
| >PRK06482 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.22 E-value=1.7 Score=37.06 Aligned_cols=73 Identities=14% Similarity=-0.027 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+.. . .+..++-.-+.++.+++.++.. +.+...+=.+|
T Consensus 14 IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~----~------~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~v 80 (276)
T PRK06482 14 FGRGMTERLLARGDRVAATVRRPDALDDLKARY----G------DRLWVLQLDVTDSAAVRAVVDR---AFAALGRIDVV 80 (276)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----c------CceEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999988776664321 0 1223333445555556665542 33222233577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+++..
T Consensus 81 i~~ag~ 86 (276)
T PRK06482 81 VSNAGY 86 (276)
T ss_pred EECCCC
Confidence 776543
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.17 E-value=1.4 Score=39.02 Aligned_cols=59 Identities=15% Similarity=0.119 Sum_probs=40.0
Q ss_pred HHHHHh-CCCcEEEEcCCchHHHHHHHcCCccc-----CCHHHHh-hcCcEEEEecCChhHHHHHhc
Q psy764 7 LFFLQF-QGHDVIVYDKNTDASQTLAKEGANMA-----LSLSTLA-SGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 7 A~~L~~-~G~~V~~~dr~~~~~~~l~~~g~~~~-----~s~~e~~-~~adivi~~v~~~~~~~~v~~ 66 (286)
|.-+++ .|.+|+++||+++|.+.+.+.|+... ++..+.+ +..|+++.+++ +..+...+.
T Consensus 182 avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~tv~-~~~~~~~l~ 247 (339)
T COG1064 182 AVQYAKAMGAEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIIDTVG-PATLEPSLK 247 (339)
T ss_pred HHHHHHHcCCeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEECCC-hhhHHHHHH
Confidence 333444 78999999999999988888875332 1122222 33888888888 667666554
|
|
| >PRK01045 ispH 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed | Back alignment and domain information |
|---|
Probab=88.15 E-value=4.7 Score=35.15 Aligned_cols=87 Identities=21% Similarity=0.192 Sum_probs=66.2
Q ss_pred hCCCcEEEEc---CCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 12 FQGHDVIVYD---KNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 12 ~~G~~V~~~d---r~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
+.+.+|+.+. .|+..+++|.+.|+...+++.++-+++-+||-+-.-+.++.+-+. .+|-.|||++=..
T Consensus 28 ~~~~~iytlG~iIHN~~vv~~L~~~GV~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~---------~~g~~viDaTCP~ 98 (298)
T PRK01045 28 KYGAPIYVRHEIVHNRYVVERLEKKGAIFVEELDEVPDGAIVIFSAHGVSPAVREEAK---------ERGLTVIDATCPL 98 (298)
T ss_pred hcCCCeEEEecCccCHHHHHHHHHCCCEEecCcccCCCCCEEEEeCCCCCHHHHHHHH---------HCCCeEEeCCCcc
Confidence 3355687773 689999999999999999988876676777777766666555543 2678899998888
Q ss_pred chHHHHHHHHHHhcCCceE
Q psy764 89 PQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 89 p~~~~~~~~~~~~~g~~~~ 107 (286)
....+...+.+.+.|...+
T Consensus 99 V~k~~~~v~~~~~~Gy~vv 117 (298)
T PRK01045 99 VTKVHKEVARMSREGYEII 117 (298)
T ss_pred chHHHHHHHHHHhCCCEEE
Confidence 8888888888888875433
|
|
| >PRK07062 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.15 E-value=1.4 Score=37.29 Aligned_cols=76 Identities=12% Similarity=0.097 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcE--EEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEF--IISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adi--vi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|+++|++|++.+|++++.+...+. +.+...+.++ +..=+.++.+++.++.. +.+...+=+
T Consensus 20 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id 89 (265)
T PRK07062 20 IGLATVELLLEAGASVAICGRDEERLASAEAR-------LREKFPGARLLAARCDVLDEADVAAFAAA---VEARFGGVD 89 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-------HHhhCCCceEEEEEecCCCHHHHHHHHHH---HHHhcCCCC
Confidence 79999999999999999999998876654322 1111111222 22335666666666553 332222335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++...
T Consensus 90 ~li~~Ag~ 97 (265)
T PRK07062 90 MLVNNAGQ 97 (265)
T ss_pred EEEECCCC
Confidence 67776543
|
|
| >TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase | Back alignment and domain information |
|---|
Probab=88.12 E-value=1.6 Score=36.48 Aligned_cols=76 Identities=16% Similarity=0.190 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|.+.+|+.++.+.+.+. ..+.-....++-.-+.++.+++..+.. +.....+-+.+
T Consensus 15 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~d~v 84 (250)
T TIGR03206 15 IGGATCRRFAEEGAKVAVFDLNREAAEKVAAD-------IRAKGGNAQAFACDITDRDSVDTAVAA---AEQALGPVDVL 84 (250)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998776655321 111001122333334455555555542 32223333566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|.+...
T Consensus 85 i~~ag~ 90 (250)
T TIGR03206 85 VNNAGW 90 (250)
T ss_pred EECCCC
Confidence 666543
|
Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate. |
| >PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.2 Score=41.46 Aligned_cols=53 Identities=21% Similarity=0.129 Sum_probs=38.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEe
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISM 54 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~ 54 (286)
.|.+.|+.|.+.|++|+++|+.+.....+.+.|+.......+.+.++|+||.+
T Consensus 20 ~G~~~a~~l~~~G~~v~~~D~~~~~~~~l~~~g~~~~~~~~~~~~~~d~vv~s 72 (460)
T PRK01390 20 SGLATARALVAGGAEVIAWDDNPASRAKAAAAGITTADLRTADWSGFAALVLS 72 (460)
T ss_pred hHHHHHHHHHHCCCEEEEECCChhhHHHHHhcCccccCCChhHHcCCCEEEEC
Confidence 36778999999999999999876555556666776544223345689988864
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=87.94 E-value=3.2 Score=35.56 Aligned_cols=35 Identities=17% Similarity=0.127 Sum_probs=25.7
Q ss_pred ccHHHHHHHHhCCCc-EEEEcCCchHHHHHHHcCCc
Q psy764 2 ISTLKLFFLQFQGHD-VIVYDKNTDASQTLAKEGAN 36 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~g~~ 36 (286)
+|...+..+...|.+ |++.++++++.+.+.+.|+.
T Consensus 132 vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~ 167 (280)
T TIGR03366 132 LGLTAAAAAAAAGAARVVAADPSPDRRELALSFGAT 167 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCc
Confidence 466666666677876 88889888888777777753
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2 | Back alignment and domain information |
|---|
Probab=87.93 E-value=1.3 Score=36.23 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=20.6
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKN 23 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~ 23 (286)
+|+.+|.+|++.|+ +++++|++
T Consensus 32 lGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 32 LGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHHHHHHHHHHcCCCEEEEECCC
Confidence 68999999999998 69999998
|
Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter. |
| >TIGR03466 HpnA hopanoid-associated sugar epimerase | Back alignment and domain information |
|---|
Probab=87.91 E-value=0.5 Score=41.27 Aligned_cols=55 Identities=18% Similarity=0.243 Sum_probs=38.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-------cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-------ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|++.|++|++.+|++++...+...++.. .+++.++++++|+||-+..
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~~~~~l~~~~~~~d~vi~~a~ 73 (328)
T TIGR03466 12 VGSAVVRLLLEQGEEVRVLVRPTSDRRNLEGLDVEIVEGDLRDPASLRKAVAGCRALFHVAA 73 (328)
T ss_pred hhHHHHHHHHHCCCEEEEEEecCccccccccCCceEEEeeCCCHHHHHHHHhCCCEEEEece
Confidence 799999999999999999999877644333223221 1234556677888877653
|
The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene. |
| >COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=87.77 E-value=2.6 Score=38.91 Aligned_cols=114 Identities=16% Similarity=0.118 Sum_probs=64.2
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchH----HHHHHHcCCcccCC--HHHHhhcCcEEEEecCCh---hHHHHHhcC-Cc---
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDA----SQTLAKEGANMALS--LSTLASGAEFIISMLPAS---QDVLDAYDG-SD--- 69 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~----~~~l~~~g~~~~~s--~~e~~~~adivi~~v~~~---~~~~~v~~~-~~--- 69 (286)
|.+.++.|.+.|++|++||.++.. ...+...++.+... ..+...++|+|+..-.-+ ..++..... .+
T Consensus 19 G~a~a~~L~~~G~~v~v~D~~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~d~vV~SPGi~~~~p~v~~A~~~gi~i~~ 98 (448)
T COG0771 19 GLAAARFLLKLGAEVTVSDDRPAPEGLAAQPLLLEGIEVELGSHDDEDLAEFDLVVKSPGIPPTHPLVEAAKAAGIEIIG 98 (448)
T ss_pred cHHHHHHHHHCCCeEEEEcCCCCccchhhhhhhccCceeecCccchhccccCCEEEECCCCCCCCHHHHHHHHcCCcEEe
Confidence 789999999999999999976654 22233345443321 225677899999874322 223332211 00
Q ss_pred --cccccC-CCCCEEEEc-CCCCchHHHHHHHHHHhcCCceEeccCCCCHH
Q psy764 70 --GILKHA-KPGVIVIDS-STVDPQVPQTLSNLAREKQITFLDAPVSGGTK 116 (286)
Q Consensus 70 --~l~~~l-~~g~ivid~-st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~ 116 (286)
.+.-.. .+..+|--+ |+....++.-+...+.+.|....-+...|.|.
T Consensus 99 dieL~~r~~~~~p~vaITGTNGKTTTTsli~~~l~~~G~~~~lgGNIG~p~ 149 (448)
T COG0771 99 DIELFYRLSGEAPIVAITGTNGKTTTTSLIAHLLKAAGLDALLGGNIGTPA 149 (448)
T ss_pred HHHHHHHhcCCCCEEEEECCCchHHHHHHHHHHHHhcCCCceeccccCccH
Confidence 011112 133444444 44555566666777777787666555555444
|
|
| >PRK12939 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.74 E-value=1.6 Score=36.43 Aligned_cols=76 Identities=16% Similarity=0.089 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. ....-.+.+++..=+.++..++.++.. +.+...+-..|
T Consensus 19 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~v 88 (250)
T PRK12939 19 LGAAFAEALAEAGATVAFNDGLAAEARELAAA-------LEAAGGRAHAIAADLADPASVQRFFDA---AAAALGGLDGL 88 (250)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998876654321 000001223333334555566666543 22222334567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 89 i~~ag~ 94 (250)
T PRK12939 89 VNNAGI 94 (250)
T ss_pred EECCCC
Confidence 776544
|
|
| >TIGR01082 murC UDP-N-acetylmuramate--alanine ligase | Back alignment and domain information |
|---|
Probab=87.73 E-value=3.7 Score=38.01 Aligned_cols=53 Identities=13% Similarity=0.087 Sum_probs=37.6
Q ss_pred cHH-HHHHHHhCCCcEEEEcCCch-HHHHHHHcCCcccC-CHHHHhhcCcEEEEec
Q psy764 3 STL-KLFFLQFQGHDVIVYDKNTD-ASQTLAKEGANMAL-SLSTLASGAEFIISML 55 (286)
Q Consensus 3 G~~-lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~e~~~~adivi~~v 55 (286)
|.+ +|+.|.+.|++|+++|.+.. ..+.+.+.|+.... ...+.++++|+||.+-
T Consensus 11 Gm~~la~~L~~~G~~v~~~D~~~~~~~~~l~~~gi~~~~g~~~~~~~~~d~vV~sp 66 (448)
T TIGR01082 11 GMSGIAEILLNRGYQVSGSDIAENATTKRLEALGIPIYIGHSAENLDDADVVVVSA 66 (448)
T ss_pred HHHHHHHHHHHCCCeEEEECCCcchHHHHHHHCcCEEeCCCCHHHCCCCCEEEECC
Confidence 555 89999999999999997653 34456666876643 2234566799888764
|
UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase (murein tripeptide ligase) is described by TIGR01081. |
| >PRK07326 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.71 E-value=1.8 Score=35.86 Aligned_cols=74 Identities=18% Similarity=0.103 Sum_probs=43.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|++.|++|.+.+|++++.+.+.+. +.+. ...+++..=+.+..+++..+.. +.+...+=++|
T Consensus 18 iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~-------l~~~-~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 86 (237)
T PRK07326 18 IGFAIAEALLAEGYKVAITARDQKELEEAAAE-------LNNK-GNVLGLAADVRDEADVQRAVDA---IVAAFGGLDVL 86 (237)
T ss_pred HHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHH-------Hhcc-CcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999998776655331 0000 1222333334555556665543 32222233566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 87 i~~ag 91 (237)
T PRK07326 87 IANAG 91 (237)
T ss_pred EECCC
Confidence 66543
|
|
| >PRK06720 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.70 E-value=2 Score=34.09 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=24.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||.+++..|.++|++|.+++|+.+..+..
T Consensus 28 IG~aia~~l~~~G~~V~l~~r~~~~~~~~ 56 (169)
T PRK06720 28 IGRNTALLLAKQGAKVIVTDIDQESGQAT 56 (169)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHH
Confidence 78999999999999999999987655433
|
|
| >TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.64 E-value=1.7 Score=36.32 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|++|++.+|++++.+.+.+.. ...-.+..++..=+.++.+++.++.. +.+.+.+-+.|
T Consensus 13 lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 82 (255)
T TIGR01963 13 IGLAIALALAAAGANVVVNDLGEAGAEAAAKVA-------TDAGGSVIYLVADVTKEDEIADMIAA---AAAEFGGLDIL 82 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------HhcCCceEEEECCCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 689999999999999999999987766654321 00001222333345566666665543 33323333556
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|.+..
T Consensus 83 i~~a~ 87 (255)
T TIGR01963 83 VNNAG 87 (255)
T ss_pred EECCC
Confidence 65543
|
This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species. |
| >PRK09186 flagellin modification protein A; Provisional | Back alignment and domain information |
|---|
Probab=87.54 E-value=1.7 Score=36.46 Aligned_cols=76 Identities=9% Similarity=-0.017 Sum_probs=45.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|++.|++|.+.+|++++.+.+.+.=..... -...+++..-+.++.++..++.. +.....+=+++
T Consensus 16 iG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~-----~~~~~~~~~Dl~d~~~~~~~~~~---~~~~~~~id~v 87 (256)
T PRK09186 16 IGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFK-----SKKLSLVELDITDQESLEEFLSK---SAEKYGKIDGA 87 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcC-----CCceeEEEecCCCHHHHHHHHHH---HHHHcCCccEE
Confidence 79999999999999999999998877655332000000 01122334455666677776653 32222333567
Q ss_pred EEcC
Q psy764 82 IDSS 85 (286)
Q Consensus 82 id~s 85 (286)
|++.
T Consensus 88 i~~A 91 (256)
T PRK09186 88 VNCA 91 (256)
T ss_pred EECC
Confidence 7664
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=87.52 E-value=0.4 Score=38.91 Aligned_cols=71 Identities=23% Similarity=0.342 Sum_probs=38.7
Q ss_pred HHHHHhCCCcEEEEcCCchHHHHHHH----cCCcccCCHHH-----HhhcCcEEEEec----CChhHHHHHhcCCccccc
Q psy764 7 LFFLQFQGHDVIVYDKNTDASQTLAK----EGANMALSLST-----LASGAEFIISML----PASQDVLDAYDGSDGILK 73 (286)
Q Consensus 7 A~~L~~~G~~V~~~dr~~~~~~~l~~----~g~~~~~s~~e-----~~~~adivi~~v----~~~~~~~~v~~~~~~l~~ 73 (286)
+.-|+++||+|+.||.++..++.+.+ .++.+.....+ .-..-|+|+..+ -.+.....++.. +.+
T Consensus 45 alyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~---m~~ 121 (192)
T PF03848_consen 45 ALYLASQGFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIEN---MKA 121 (192)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHHH---HHH
T ss_pred HHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccCCcCEEEEEEEeccCCHHHHHHHHHH---HHh
Confidence 45689999999999999987765543 24332211111 113456766532 123445556553 555
Q ss_pred cCCCCCE
Q psy764 74 HAKPGVI 80 (286)
Q Consensus 74 ~l~~g~i 80 (286)
.+++|-.
T Consensus 122 ~~~pGG~ 128 (192)
T PF03848_consen 122 ATKPGGY 128 (192)
T ss_dssp TEEEEEE
T ss_pred hcCCcEE
Confidence 5666654
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >PRK05569 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=87.40 E-value=11 Score=28.58 Aligned_cols=84 Identities=13% Similarity=0.081 Sum_probs=48.2
Q ss_pred HhhcCcEEEEecCCh-------hHHHHHhcCCccccccCCCCCEEEEcCCC--C-chHHHHHHHHHHhcCCceEeccCCC
Q psy764 44 LASGAEFIISMLPAS-------QDVLDAYDGSDGILKHAKPGVIVIDSSTV--D-PQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 44 ~~~~adivi~~v~~~-------~~~~~v~~~~~~l~~~l~~g~ivid~st~--~-p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
.+.++|.|++..|+. ..++.++.. +.....+|+.++-.+|. . ......+.+.+...|+.++..
T Consensus 45 ~~~~~d~iilgsPty~~~~~~~~~~~~~~~~---l~~~~~~~K~v~~f~t~g~~~~~~~~~~~~~l~~~g~~~~~~---- 117 (141)
T PRK05569 45 DVLEADAVAFGSPSMDNNNIEQEEMAPFLDQ---FKLTPNENKKCILFGSYGWDNGEFMKLWKDRMKDYGFNVIGD---- 117 (141)
T ss_pred HHhhCCEEEEECCCcCCCcCChHHHHHHHHH---hhccCcCCCEEEEEeCCCCCCCcHHHHHHHHHHHCCCeEeee----
Confidence 456899999999952 245666653 22212256555444332 2 334556677777788776541
Q ss_pred CHHhhhcCceEEEec-CCHhhHHHHHHHHHHh
Q psy764 114 GTKAAQEATLTFMVG-GDKSSLEKAKPILKCM 144 (286)
Q Consensus 114 ~~~~a~~g~l~~~~g-g~~~~~~~~~~ll~~~ 144 (286)
+.+ .+ -+++..+++.++-+.+
T Consensus 118 ---------~~~-~~~p~~~~~~~~~~~g~~l 139 (141)
T PRK05569 118 ---------LAV-NESPNKEELNSAKELGKKL 139 (141)
T ss_pred ---------EEE-ccCCCHHHHHHHHHHHHHH
Confidence 111 12 3566777777776554
|
|
| >PRK08309 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.37 E-value=2.6 Score=33.75 Aligned_cols=91 Identities=12% Similarity=0.106 Sum_probs=51.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|.+.|++|.+.+|++++.+.+...-.. ......+-.-+.++.+++.++.+ ......+-.++
T Consensus 11 ~gg~la~~L~~~G~~V~v~~R~~~~~~~l~~~l~~--------~~~i~~~~~Dv~d~~sv~~~i~~---~l~~~g~id~l 79 (177)
T PRK08309 11 MLKRVSLWLCEKGFHVSVIARREVKLENVKRESTT--------PESITPLPLDYHDDDALKLAIKS---TIEKNGPFDLA 79 (177)
T ss_pred HHHHHHHHHHHCcCEEEEEECCHHHHHHHHHHhhc--------CCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCeEE
Confidence 45679999999999999999998876665431100 11222333345666777776653 33322222344
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
+. .+.....+.+.+.+++.|+.
T Consensus 80 v~--~vh~~~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 80 VA--WIHSSAKDALSVVCRELDGS 101 (177)
T ss_pred EE--eccccchhhHHHHHHHHccC
Confidence 43 33334455555556555554
|
|
| >PRK06101 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.8 Score=36.12 Aligned_cols=55 Identities=16% Similarity=0.088 Sum_probs=38.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
+|..+++.|+++|++|.+.+|++++.+.+.+.+. +...+..=+.++.+++..+..
T Consensus 13 iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~~~~ 67 (240)
T PRK06101 13 IGKQLALDYAKQGWQVIACGRNQSVLDELHTQSA-----------NIFTLAFDVTDHPGTKAALSQ 67 (240)
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcC-----------CCeEEEeeCCCHHHHHHHHHh
Confidence 6899999999999999999999888776654321 122333335566667766653
|
|
| >PRK06057 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.30 E-value=2.6 Score=35.43 Aligned_cols=70 Identities=20% Similarity=0.202 Sum_probs=43.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.- ...++..-+.++.+++.++.. +.+...+=+.+
T Consensus 19 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~------------~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~v 83 (255)
T PRK06057 19 IGLATARRLAAEGATVVVGDIDPEAGKAAADEV------------GGLFVPTDVTDEDAVNALFDT---AAETYGSVDIA 83 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHc------------CCcEEEeeCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999987665543320 012344445555666666653 22222223566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 84 i~~ag 88 (255)
T PRK06057 84 FNNAG 88 (255)
T ss_pred EECCC
Confidence 66554
|
|
| >PRK06138 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=1.6 Score=36.50 Aligned_cols=75 Identities=15% Similarity=0.088 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|+.+..+...+.- . .. .+..++..-+.++.++++++.. +.+...+=+.|
T Consensus 17 iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~-~-~~------~~~~~~~~D~~~~~~~~~~~~~---i~~~~~~id~v 85 (252)
T PRK06138 17 IGRATAKLFAREGARVVVADRDAEAAERVAAAI-A-AG------GRAFARQGDVGSAEAVEALVDF---VAARWGRLDVL 85 (252)
T ss_pred HHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHH-h-cC------CeEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999987665443221 0 00 1223344455666777776653 43333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 86 i~~ag~ 91 (252)
T PRK06138 86 VNNAGF 91 (252)
T ss_pred EECCCC
Confidence 777654
|
|
| >PRK08085 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.22 E-value=2 Score=36.08 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=25.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||..+++.|++.|++|.+.+|++++.+.+
T Consensus 21 iG~~ia~~L~~~G~~vvl~~r~~~~~~~~ 49 (254)
T PRK08085 21 IGFLLATGLAEYGAEIIINDITAERAELA 49 (254)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 79999999999999999999998776554
|
|
| >PRK08589 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.15 E-value=2.1 Score=36.55 Aligned_cols=75 Identities=16% Similarity=0.129 Sum_probs=44.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|+++|++|++.+|+ ++.+.+.+. +.+.-.+...+.+=+.++.+++.++.. +.+...+=+++
T Consensus 18 IG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~g~id~l 86 (272)
T PRK08589 18 IGQASAIALAQEGAYVLAVDIA-EAVSETVDK-------IKSNGGKAKAYHVDISDEQQVKDFASE---IKEQFGRVDVL 86 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHH-------HHhcCCeEEEEEeecCCHHHHHHHHHH---HHHHcCCcCEE
Confidence 7999999999999999999998 554443221 000001233444445666666666653 33322233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 87 i~~Ag~ 92 (272)
T PRK08589 87 FNNAGV 92 (272)
T ss_pred EECCCC
Confidence 666543
|
|
| >PRK06719 precorrin-2 dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=87.13 E-value=3.3 Score=32.40 Aligned_cols=97 Identities=15% Similarity=0.032 Sum_probs=55.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC-CcccC-CH-HHHhhcCcEEEEecCChhHHHHHhcC---Cc------
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG-ANMAL-SL-STLASGAEFIISMLPASQDVLDAYDG---SD------ 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g-~~~~~-s~-~e~~~~adivi~~v~~~~~~~~v~~~---~~------ 69 (286)
+|.-.++.|.+.|++|++++ ++..+++.+.+ +.... .+ .+-++++|+||.+..++ .+...+.. ..
T Consensus 24 va~rka~~Ll~~ga~V~VIs--p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lViaaT~d~-e~N~~i~~~a~~~~~vn~~ 100 (157)
T PRK06719 24 IAYRKASGLKDTGAFVTVVS--PEICKEMKELPYITWKQKTFSNDDIKDAHLIYAATNQH-AVNMMVKQAAHDFQWVNVV 100 (157)
T ss_pred HHHHHHHHHHhCCCEEEEEc--CccCHHHHhccCcEEEecccChhcCCCceEEEECCCCH-HHHHHHHHHHHHCCcEEEC
Confidence 45667888899999999996 44444554432 22211 11 22357899999998865 33332211 00
Q ss_pred -------cccc-cCCCCCEEEEcCC--CCchHHHHHHHHHHh
Q psy764 70 -------GILK-HAKPGVIVIDSST--VDPQVPQTLSNLARE 101 (286)
Q Consensus 70 -------~l~~-~l~~g~ivid~st--~~p~~~~~~~~~~~~ 101 (286)
-..+ ..+.|.+.|-.|| .+|..++++.+.+++
T Consensus 101 d~~~~~~f~~pa~v~~~~l~iaisT~G~sP~la~~lr~~ie~ 142 (157)
T PRK06719 101 SDGTESSFHTPGVIRNDEYVVTISTSGKDPSFTKRLKQELTS 142 (157)
T ss_pred CCCCcCcEEeeeEEEECCeEEEEECCCcChHHHHHHHHHHHH
Confidence 0111 1344556655554 468888777776654
|
|
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=87.09 E-value=2.6 Score=39.63 Aligned_cols=90 Identities=16% Similarity=0.199 Sum_probs=58.8
Q ss_pred HHHHHHhCCCcEEEEcC----CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 6 KLFFLQFQGHDVIVYDK----NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 6 lA~~L~~~G~~V~~~dr----~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.++.|.+.||+|.+=.- ..=.=++..+.|+++.++. |+. +||+|+- |..|.. ++ .+.+++|+++
T Consensus 22 ~v~~L~~~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~~-~v~-~~diilk-V~~P~~-~e--------~~~l~~g~~l 89 (509)
T PRK09424 22 TVEQLLKLGFEVVVESGAGQLASFDDAAYREAGAEIVDGA-AVW-QSDIILK-VNAPSD-DE--------IALLREGATL 89 (509)
T ss_pred HHHHHHHCCCEEEEeCCCCcCCCCCHHHHHHCCCEEecCc-ccc-cCCEEEE-eCCCCH-HH--------HHhcCCCCEE
Confidence 46778999999886421 1001134567799988764 777 7998873 443322 22 2346789998
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
+-. ..|....++.+.+.++++..++.
T Consensus 90 i~~--l~p~~~~~l~~~l~~~~it~ia~ 115 (509)
T PRK09424 90 VSF--IWPAQNPELLEKLAARGVTVLAM 115 (509)
T ss_pred EEE--eCcccCHHHHHHHHHcCCEEEEe
Confidence 854 44555677888888888877764
|
|
| >PRK12360 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=87.06 E-value=7.1 Score=33.73 Aligned_cols=85 Identities=18% Similarity=0.259 Sum_probs=64.4
Q ss_pred CCcEEEEc---CCchHHHHHHHcCCccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 14 GHDVIVYD---KNTDASQTLAKEGANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 14 G~~V~~~d---r~~~~~~~l~~~g~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
|.+|+.+. .|+..+++|.+.|+.+. +++.++-+++-+||-+=..+..+.+-+. ..|-.|||.+=..
T Consensus 31 ~~~vy~lG~iVHN~~Vv~~L~~~Gv~~v~~~~~~~v~~~~~ViirAHGv~~~~~~~~~---------~~g~~viDaTCP~ 101 (281)
T PRK12360 31 GKKIYTLGPLIHNNQVVSDLEEKGVKTIEESEIDSLKEGDVVIIRSHGVSKKVYKDLK---------DKGLEIIDATCPF 101 (281)
T ss_pred CCCeEEecCCcCCHHHHHHHHHCcCEEECcCchhhCCCCCEEEEeCCCCCHHHHHHHH---------HCCCeEEeCCCcc
Confidence 66788873 68999999999999999 8888876566677766665555555443 2577899998888
Q ss_pred chHHHHHHHHHHhcCCceE
Q psy764 89 PQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 89 p~~~~~~~~~~~~~g~~~~ 107 (286)
....+...+.+.+.|...+
T Consensus 102 V~k~~~~v~~~~~~Gy~iv 120 (281)
T PRK12360 102 VKKIQNIVEEYYNKGYSII 120 (281)
T ss_pred chHHHHHHHHHHhCCCEEE
Confidence 8888888888888875433
|
|
| >PRK07035 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=87.03 E-value=1.9 Score=36.15 Aligned_cols=76 Identities=18% Similarity=0.188 Sum_probs=44.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|+.++.+.+.+.- .+.-.....+-.-+.+..+++.++.. +.+...+=+++
T Consensus 20 IG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 89 (252)
T PRK07035 20 IGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAI-------VAAGGKAEALACHIGEMEQIDALFAH---IRERHGRLDIL 89 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------HhcCCeEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999987766553320 11001112233334555566665543 33323333577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 90 i~~ag~ 95 (252)
T PRK07035 90 VNNAAA 95 (252)
T ss_pred EECCCc
Confidence 766653
|
|
| >PRK08263 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.96 E-value=2.1 Score=36.46 Aligned_cols=73 Identities=14% Similarity=0.058 Sum_probs=44.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+.+.+.. -....++-.-+.++.+++.++.. +.+...+=+.+
T Consensus 15 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d~v 81 (275)
T PRK08263 15 FGRAWTEAALERGDRVVATARDTATLADLAEKY----------GDRLLPLALDVTDRAAVFAAVET---AVEHFGRLDIV 81 (275)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhc----------cCCeeEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 789999999999999999999988776654321 01122233334555566665543 33323233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 82 i~~ag~ 87 (275)
T PRK08263 82 VNNAGY 87 (275)
T ss_pred EECCCC
Confidence 666543
|
|
| >PRK06194 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=86.83 E-value=1.9 Score=36.92 Aligned_cols=74 Identities=18% Similarity=0.144 Sum_probs=43.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|+++|++|++.+|+.++.++..+. ... .+.++.++ =+.+..+++.++.+ +.+...+=+
T Consensus 18 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~d~~~~~~~~~~---~~~~~g~id 85 (287)
T PRK06194 18 FGLAFARIGAALGMKLVLADVQQDALDRAVAE-------LRA--QGAEVLGVRTDVSDAAQVEALADA---ALERFGAVH 85 (287)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-------HHh--cCCeEEEEECCCCCHHHHHHHHHH---HHHHcCCCC
Confidence 78999999999999999999998766554321 000 02223222 24455566666553 332222335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
+||++...
T Consensus 86 ~vi~~Ag~ 93 (287)
T PRK06194 86 LLFNNAGV 93 (287)
T ss_pred EEEECCCC
Confidence 67776544
|
|
| >PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.78 E-value=3.6 Score=38.03 Aligned_cols=114 Identities=15% Similarity=0.071 Sum_probs=61.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch--HHHHHHH--cCCcccC--CHHHHhhcCcEEEEecCCh---hHHHHHhcCC----
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD--ASQTLAK--EGANMAL--SLSTLASGAEFIISMLPAS---QDVLDAYDGS---- 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~--~g~~~~~--s~~e~~~~adivi~~v~~~---~~~~~v~~~~---- 68 (286)
.|.++|+.|.+.|++|+++|..+. ..+.+.+ .|+.... ...+.+.++|+||.+-.-+ ..+.......
T Consensus 17 sG~s~a~~L~~~G~~v~~~D~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~d~vV~sp~i~~~~p~~~~a~~~~i~i~ 96 (448)
T PRK03803 17 TGLSVVRFLARQGIPFAVMDSREQPPGLDTLAREFPDVELRCGGFDCELLVQASEIIISPGLALDTPALRAAAAMGIEVI 96 (448)
T ss_pred hHHHHHHHHHhCCCeEEEEeCCCCchhHHHHHhhcCCcEEEeCCCChHHhcCCCEEEECCCCCCCCHHHHHHHHCCCcEE
Confidence 477899999999999999997643 2344655 2665532 2345567899887764222 2222221110
Q ss_pred --ccccccCCCCCEEEEcCCCCch-HHHHHHHHHHhcCCceEeccCCCCH
Q psy764 69 --DGILKHAKPGVIVIDSSTVDPQ-VPQTLSNLAREKQITFLDAPVSGGT 115 (286)
Q Consensus 69 --~~l~~~l~~g~ivid~st~~p~-~~~~~~~~~~~~g~~~~~~pv~g~~ 115 (286)
-.++..+.+.++|--+.|-.-. ++.-+...+...|..+.-+...|.|
T Consensus 97 ~~~el~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~ggnig~p 146 (448)
T PRK03803 97 GDIELFAREAKAPVIAITGSNGKSTVTTLVGEMAKAAGKRVAVGGNIGTP 146 (448)
T ss_pred EHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCeEEecCcCHH
Confidence 0122122234555555554444 4444555666666555544444443
|
|
| >PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=86.54 E-value=4.7 Score=37.66 Aligned_cols=54 Identities=20% Similarity=0.155 Sum_probs=39.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH-HHcCCcccC--CHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL-AKEGANMAL--SLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l-~~~g~~~~~--s~~e~~~~adivi~~v 55 (286)
.|.++++.|.+.|++|+++|+++....++ .+.|+.... ...+.+.++|+||.+-
T Consensus 26 sG~a~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Sp 82 (473)
T PRK00141 26 SGRGIAAMLSELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTSP 82 (473)
T ss_pred HHHHHHHHHHHCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeCC
Confidence 47789999999999999999887665443 444776643 2345567889888763
|
|
| >PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.53 E-value=1.2 Score=39.05 Aligned_cols=69 Identities=20% Similarity=0.181 Sum_probs=41.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+|.-+.+.|.++.+ ++.....+..+ .. .+..+..+++|++|+|+|+. ...++... + ...|..
T Consensus 14 ~G~eLlrlL~~hp~~~l~~~~s~~~~---------~~-~~~~~~~~~~DvvFlalp~~-~s~~~~~~---~---~~~g~~ 76 (313)
T PRK11863 14 TGLQIRERLAGRSDIELLSIPEAKRK---------DA-AARRELLNAADVAILCLPDD-AAREAVAL---I---DNPATR 76 (313)
T ss_pred HHHHHHHHHhcCCCeEEEEEecCCCC---------cc-cCchhhhcCCCEEEECCCHH-HHHHHHHH---H---HhCCCE
Confidence 57788888877664 33333222211 11 23345567899999999975 44444331 2 246889
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
|||.|+.
T Consensus 77 VIDlSad 83 (313)
T PRK11863 77 VIDASTA 83 (313)
T ss_pred EEECChh
Confidence 9999973
|
|
| >PRK07774 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.46 E-value=2.1 Score=35.73 Aligned_cols=76 Identities=14% Similarity=0.128 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|+++..+.+.+. ..+.-.....+..-+.+..+++.++.. +.+...+=++|
T Consensus 18 iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~v 87 (250)
T PRK07774 18 IGQAYAEALAREGASVVVADINAEGAERVAKQ-------IVADGGTAIAVQVDVSDPDSAKAMADA---TVSAFGGIDYL 87 (250)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 79999999999999999999997765544321 000000122333344556666666553 32223333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++.+.
T Consensus 88 i~~ag~ 93 (250)
T PRK07774 88 VNNAAI 93 (250)
T ss_pred EECCCC
Confidence 777664
|
|
| >PLN00016 RNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=86.39 E-value=4.7 Score=36.32 Aligned_cols=25 Identities=20% Similarity=0.293 Sum_probs=23.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA 26 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~ 26 (286)
+|+.+++.|+++||+|++.+|++..
T Consensus 68 iG~~lv~~L~~~G~~V~~l~R~~~~ 92 (378)
T PLN00016 68 IGFYLAKELVKAGHEVTLFTRGKEP 92 (378)
T ss_pred EhHHHHHHHHHCCCEEEEEecCCcc
Confidence 7999999999999999999998764
|
|
| >PRK07677 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.37 E-value=2.3 Score=35.66 Aligned_cols=73 Identities=10% Similarity=0.099 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|..+++.|++.|++|++.+|++++.+.+.+. +.+ ...++.+ .-+.++..++.++.. +.+...+=.
T Consensus 13 iG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~-------~~~--~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id 80 (252)
T PRK07677 13 MGKAMAKRFAEEGANVVITGRTKEKLEEAKLE-------IEQ--FPGQVLTVQMDVRNPEDVQKMVEQ---IDEKFGRID 80 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHh--cCCcEEEEEecCCCHHHHHHHHHH---HHHHhCCcc
Confidence 79999999999999999999998766554321 000 0122222 234566666666653 332222335
Q ss_pred EEEEcCC
Q psy764 80 IVIDSST 86 (286)
Q Consensus 80 ivid~st 86 (286)
.+|++..
T Consensus 81 ~lI~~ag 87 (252)
T PRK07677 81 ALINNAA 87 (252)
T ss_pred EEEECCC
Confidence 6676543
|
|
| >PF10100 DUF2338: Uncharacterized protein conserved in bacteria (DUF2338); InterPro: IPR016935 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=86.29 E-value=26 Score=31.87 Aligned_cols=255 Identities=16% Similarity=0.169 Sum_probs=140.9
Q ss_pred HHHHHHHhCCC-cEEEEcCCchHHHHHHHc-----C--------------------CcccCCHHHHhhcCcEEEEecCCh
Q psy764 5 LKLFFLQFQGH-DVIVYDKNTDASQTLAKE-----G--------------------ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 5 ~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-----g--------------------~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
-+|..|.+.+. +|-+.+|...+.+++-+. + -....+.+++..+=|.+|+|+|.
T Consensus 15 QLAv~lk~~~~~~vGi~~R~S~rSq~f~~aL~~~~~~~~v~vqn~~h~~l~G~~~id~~~~~~~~i~g~WdtlILavta- 93 (429)
T PF10100_consen 15 QLAVILKKHGNCRVGIVGRESVRSQRFFEALARSDGLFEVSVQNEQHQALSGECTIDHVFQDYEEIEGEWDTLILAVTA- 93 (429)
T ss_pred HHHHHHHhccCceeeeecCcchhHHHHHHHHHhCCCEEEEeecchhhhhhcCeEEhhHhhcCHHHhcccccEEEEEech-
Confidence 46666666654 688899987766555331 1 13456777888889999999997
Q ss_pred hHHHHHhcCCccccc-cCCCCCEEEEcCCCCchHHHHHHHHHHhcC--CceEec-------cCCCC-HH-----hhhcCc
Q psy764 59 QDVLDAYDGSDGILK-HAKPGVIVIDSSTVDPQVPQTLSNLAREKQ--ITFLDA-------PVSGG-TK-----AAQEAT 122 (286)
Q Consensus 59 ~~~~~v~~~~~~l~~-~l~~g~ivid~st~~p~~~~~~~~~~~~~g--~~~~~~-------pv~g~-~~-----~a~~g~ 122 (286)
++-.+|+.+ |-. .+..=+.||-.|..-... .-+...+.+.+ +.+++- -.+.+ ++ .+.+..
T Consensus 94 DAY~~VL~q---l~~~~L~~vk~iVLvSPtfGS~-~lv~~~l~~~~~~~EVISFStY~gdTr~~d~~~~~~vlt~~vK~k 169 (429)
T PF10100_consen 94 DAYLDVLQQ---LPWEVLKRVKSIVLVSPTFGSH-LLVKGFLNDLGPDAEVISFSTYYGDTRWSDGEQPNRVLTTAVKKK 169 (429)
T ss_pred HHHHHHHHh---cCHHHHhhCCEEEEECcccchH-HHHHHHHHhcCCCceEEEeecccccceeccCCCcceehhhhhhce
Confidence 477888875 332 233334455444332221 12233344333 233321 11111 11 122233
Q ss_pred eEEEecC---CHhhHHHHHHHHHHhcCCeEecCCcchHHHH-------------------------------HH-----H
Q psy764 123 LTFMVGG---DKSSLEKAKPILKCMGRNIVHCGDSGNGQVA-------------------------------KL-----C 163 (286)
Q Consensus 123 l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~-------------------------------Kl-----~ 163 (286)
+++|. +...+++...+|+.++-++..+..+=.|+.- |+ +
T Consensus 170 --iYigSt~~~s~~~~~l~~~~~~~gI~~~~~~~pl~AE~rNislYVHpplfmndfsL~aIF~~~~~~kYvYKL~PEGPI 247 (429)
T PF10100_consen 170 --IYIGSTHSNSPELDKLCRLLAQLGIQLEVMDNPLEAESRNISLYVHPPLFMNDFSLNAIFEEDGVPKYVYKLFPEGPI 247 (429)
T ss_pred --EEEEeCCCCChHHHHHHHHHHHcCCeEEEeCChHhhhhcccceecCChHhhChhhHHHHhCCCCCcceEEecCCCCCC
Confidence 44443 3567788889999998555444322122111 10 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc--CCCcc-----cccccCCCCCccc--------------cC--C
Q psy764 164 NNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS--SGRCW-----SSEVYNPVPGVLS--------------NV--P 220 (286)
Q Consensus 164 ~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~--~~~s~-----~~~~~~~~~~~~~--------------~~--~ 220 (286)
...++.-+....-|++.+..++|+++=.+++.++.. +-... --+.+...+.+-+ +. +
T Consensus 248 T~~~I~~M~~lw~Ei~~i~~~l~~~~~NLLkFm~ddNYPV~~eslsr~~Ie~F~~l~~i~QEYLLYVRYtsiLIDPFS~P 327 (429)
T PF10100_consen 248 TPTLIRDMVQLWKEIMEILNKLGIEPFNLLKFMNDDNYPVRPESLSRDDIESFEELPAIHQEYLLYVRYTSILIDPFSEP 327 (429)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhccCCCCCChhhCCHHHHhhhhcCChHHhhHHHHHHhhhheeCCCCCC
Confidence 223344456678999999999999999999998873 11000 0011111111110 00 0
Q ss_pred -CCCCCCCCc----------------cchhH----HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 221 -ASNNYNGGF----------------KISLL----AKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 221 -~~~~~~~~f----------------~~~~~----~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
.+|.| ..| .+..+ ..-++.+..+|+.+|+++|.++...+.|+....
T Consensus 328 D~~GrY-FDFSAVp~~~i~~d~~g~w~iPRmP~EDy~r~~~i~~la~~l~v~~Ptid~~l~~Ye~~l~ 394 (429)
T PF10100_consen 328 DEQGRY-FDFSAVPYKKIFKDEEGLWDIPRMPKEDYYRLKIIQGLARALNVSCPTIDRFLARYESKLS 394 (429)
T ss_pred CCCCCc-ccccccceeeeeecCCCcccCCCCCHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 01111 012 12223 223577899999999999999999999998775
|
|
| >PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.24 E-value=2.6 Score=37.61 Aligned_cols=79 Identities=16% Similarity=0.127 Sum_probs=47.6
Q ss_pred ccHHHHHHHHhC-CCcEEE-EcCCchHHHHHHH-------------------cCCcccCCHHHHhhcCcEEEEecCChhH
Q psy764 2 ISTLKLFFLQFQ-GHDVIV-YDKNTDASQTLAK-------------------EGANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~-~dr~~~~~~~l~~-------------------~g~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
||..+++.+.++ +++|.+ +|++++....+.+ .++.+..++.++..++|+||.|.|.. .
T Consensus 12 IGr~va~al~~~~d~eLvav~d~~~~~~~~la~~~G~~~~~~~~~~~~~~~~~~i~V~~~~~el~~~vDVVIdaT~~~-~ 90 (341)
T PRK04207 12 IGKRVADAVAAQPDMELVGVAKTKPDYEARVAVEKGYPLYVADPEREKAFEEAGIPVAGTIEDLLEKADIVVDATPGG-V 90 (341)
T ss_pred HHHHHHHHHhcCCCcEEEEEECCChHHHHHHHHhcCCCccccCccccccccCCceEEcCChhHhhccCCEEEECCCch-h
Confidence 788888877654 456554 4767655544333 13344556777777888888888754 3
Q ss_pred HHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 61 VLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 61 ~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
..+... .++..|+.+|+.+..
T Consensus 91 ~~e~a~------~~~~aGk~VI~~~~~ 111 (341)
T PRK04207 91 GAKNKE------LYEKAGVKAIFQGGE 111 (341)
T ss_pred hHHHHH------HHHHCCCEEEEcCCC
Confidence 333322 234456777776653
|
|
| >PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=86.23 E-value=1.8 Score=36.01 Aligned_cols=73 Identities=22% Similarity=0.244 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|..+++.|++.|++|++.+|++++.+.+... ..+ ..++.+. =+.++.+++.++.. +.+...+=+
T Consensus 17 iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~---~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d 83 (251)
T PRK07231 17 IGEGIARRFAAEGARVVVTDRNEEAAERVAAE-------ILA---GGRAIAVAADVSDEADVEAAVAA---ALERFGSVD 83 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------Hhc---CCeEEEEECCCCCHHHHHHHHHH---HHHHhCCCC
Confidence 78999999999999999999998876655332 000 1222222 23555566665543 323233335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
.||++...
T Consensus 84 ~vi~~ag~ 91 (251)
T PRK07231 84 ILVNNAGT 91 (251)
T ss_pred EEEECCCC
Confidence 67776654
|
|
| >PLN02253 xanthoxin dehydrogenase | Back alignment and domain information |
|---|
Probab=86.14 E-value=2 Score=36.63 Aligned_cols=74 Identities=16% Similarity=0.157 Sum_probs=45.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|+++..+.+.+. .. . -.+..++-.=+.++++++.++.. +.+...+=+++
T Consensus 30 IG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~-~~--~-----~~~~~~~~~Dl~d~~~~~~~~~~---~~~~~g~id~l 98 (280)
T PLN02253 30 IGESIVRLFHKHGAKVCIVDLQDDLGQNVCDS-LG--G-----EPNVCFFHCDVTVEDDVSRAVDF---TVDKFGTLDIM 98 (280)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH-hc--C-----CCceEEEEeecCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 79999999999999999999987766554332 00 0 01223344445666666666653 33323233566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 99 i~~Ag 103 (280)
T PLN02253 99 VNNAG 103 (280)
T ss_pred EECCC
Confidence 66654
|
|
| >PRK08277 D-mannonate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.11 E-value=1.9 Score=36.82 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=25.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||.++++.|++.|++|.+.+|+.++.+.+.
T Consensus 22 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~ 51 (278)
T PRK08277 22 LGGAMAKELARAGAKVAILDRNQEKAEAVV 51 (278)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 789999999999999999999987665543
|
|
| >PRK06172 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.08 E-value=2.7 Score=35.22 Aligned_cols=30 Identities=17% Similarity=0.303 Sum_probs=26.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|++.|++|.+.+|++++.+.+.
T Consensus 19 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 48 (253)
T PRK06172 19 IGRATALAFAREGAKVVVADRDAAGGEETV 48 (253)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999987765543
|
|
| >TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E | Back alignment and domain information |
|---|
Probab=86.02 E-value=2.7 Score=34.42 Aligned_cols=104 Identities=11% Similarity=0.152 Sum_probs=56.6
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc--------CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE--------GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--------g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
+|+.++++|++.|. +++++|.+.-....+... |-.-+....+-++ +.++-+.+.+..-.-+.
T Consensus 32 lGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~~~------- 104 (202)
T TIGR02356 32 LGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEVAAQRLRELNSDIQVTALKERVTAEN------- 104 (202)
T ss_pred HHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHHHHHHHHHhCCCCEEEEehhcCCHHH-------
Confidence 68999999999997 899999884322222211 2111111122222 23444444432111011
Q ss_pred ccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCC
Q psy764 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
+...+..-++||+++ ..+..-..+.+.+.+++..++.+-+.|
T Consensus 105 ~~~~~~~~D~Vi~~~-d~~~~r~~l~~~~~~~~ip~i~~~~~g 146 (202)
T TIGR02356 105 LELLINNVDLVLDCT-DNFATRYLINDACVALGTPLISAAVVG 146 (202)
T ss_pred HHHHHhCCCEEEECC-CCHHHHHHHHHHHHHcCCCEEEEEecc
Confidence 111233446888875 445555667777888888888865544
|
coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli. |
| >PRK07856 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=86.02 E-value=1.8 Score=36.38 Aligned_cols=25 Identities=16% Similarity=0.107 Sum_probs=22.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA 26 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~ 26 (286)
||..+++.|++.|++|++.+|++++
T Consensus 18 IG~~la~~l~~~g~~v~~~~r~~~~ 42 (252)
T PRK07856 18 IGAGIARAFLAAGATVVVCGRRAPE 42 (252)
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhh
Confidence 7899999999999999999998764
|
|
| >PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional | Back alignment and domain information |
|---|
Probab=86.00 E-value=2.3 Score=39.50 Aligned_cols=54 Identities=19% Similarity=0.071 Sum_probs=38.6
Q ss_pred ccHH-HHHHHHhCCCcEEEEcCCch-HHHHHHHcCCcccC-CHHHHhhcCcEEEEec
Q psy764 2 ISTL-KLFFLQFQGHDVIVYDKNTD-ASQTLAKEGANMAL-SLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~-lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~-s~~e~~~~adivi~~v 55 (286)
.|.+ +|+.|.+.|++|+++|.++. ..+.+.+.|+.... ...+.++++|+||.+-
T Consensus 18 sG~s~~a~~L~~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~d~vv~sp 74 (461)
T PRK00421 18 IGMSGLAEVLLNLGYKVSGSDLKESAVTQRLLELGAIIFIGHDAENIKDADVVVYSS 74 (461)
T ss_pred hhHHHHHHHHHhCCCeEEEECCCCChHHHHHHHCCCEEeCCCCHHHCCCCCEEEECC
Confidence 4667 79999999999999997643 34456666776642 2345567899888765
|
|
| >TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=85.95 E-value=2.9 Score=34.86 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=42.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH--HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA--SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~--~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|+++|++|.+.+|++.. .+.+.+.+ .....+..-+.++.+++.++.. +.+...+=.
T Consensus 17 IG~~ia~~l~~~G~~vi~~~r~~~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d 82 (248)
T TIGR01832 17 LGQGIAVGLAEAGADIVGAGRSEPSETQQQVEALG-----------RRFLSLTADLSDIEAIKALVDS---AVEEFGHID 82 (248)
T ss_pred HHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHhcC-----------CceEEEECCCCCHHHHHHHHHH---HHHHcCCCC
Confidence 7999999999999999999987521 11121111 1223444455666666666553 322223335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
.+|++...
T Consensus 83 ~li~~ag~ 90 (248)
T TIGR01832 83 ILVNNAGI 90 (248)
T ss_pred EEEECCCC
Confidence 67766543
|
This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation. |
| >PLN02662 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=85.93 E-value=1.7 Score=37.96 Aligned_cols=55 Identities=16% Similarity=0.192 Sum_probs=36.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH---HHHHc-----CC-----cc--cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ---TLAKE-----GA-----NM--ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~---~l~~~-----g~-----~~--~~s~~e~~~~adivi~~v~ 56 (286)
||+.+++.|+++||+|.+.+|+.+... .+... .+ .. ..+..++++++|+||-+..
T Consensus 16 IG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~Vih~A~ 85 (322)
T PLN02662 16 IASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLEEGSFDSVVDGCEGVFHTAS 85 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccCcchHHHHHcCCCEEEEeCC
Confidence 799999999999999999988765432 22111 11 11 1235566778898887653
|
|
| >PLN00141 Tic62-NAD(P)-related group II protein; Provisional | Back alignment and domain information |
|---|
Probab=85.93 E-value=1.4 Score=37.16 Aligned_cols=29 Identities=17% Similarity=0.064 Sum_probs=25.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
+|+.+++.|+++||+|++..|++++...+
T Consensus 29 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~ 57 (251)
T PLN00141 29 TGKRIVEQLLAKGFAVKAGVRDVDKAKTS 57 (251)
T ss_pred HHHHHHHHHHhCCCEEEEEecCHHHHHHh
Confidence 78999999999999999999998876544
|
|
| >PLN02650 dihydroflavonol-4-reductase | Back alignment and domain information |
|---|
Probab=85.82 E-value=1.6 Score=38.72 Aligned_cols=54 Identities=13% Similarity=0.120 Sum_probs=37.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----C-----------CcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----G-----------ANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g-----------~~~~~s~~e~~~~adivi~~v 55 (286)
||+.+++.|+++|++|.+.+|++++...+... + +.-..+..++++++|+||-+-
T Consensus 17 IGs~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~v~~Dl~d~~~~~~~~~~~d~ViH~A 85 (351)
T PLN02650 17 IGSWLVMRLLERGYTVRATVRDPANVKKVKHLLDLPGATTRLTLWKADLAVEGSFDDAIRGCTGVFHVA 85 (351)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcchhHHHHHHHhccCCCCceEEEEecCCChhhHHHHHhCCCEEEEeC
Confidence 79999999999999999998887654433211 1 111124556777888887665
|
|
| >PRK07984 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=85.81 E-value=2.8 Score=35.69 Aligned_cols=73 Identities=8% Similarity=-0.044 Sum_probs=42.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc---hHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT---DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~---~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++|+.|+++|++|.+.+|+. +.++.+.... ..+..+-+=+.++++++.++.. +.+...+=
T Consensus 20 IG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~-----------~~~~~~~~Dl~~~~~v~~~~~~---~~~~~g~i 85 (262)
T PRK07984 20 IAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL-----------GSDIVLPCDVAEDASIDAMFAE---LGKVWPKF 85 (262)
T ss_pred HHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc-----------CCceEeecCCCCHHHHHHHHHH---HHhhcCCC
Confidence 78999999999999999888873 2223332211 0111222334566777777653 33322233
Q ss_pred CEEEEcCCCC
Q psy764 79 VIVIDSSTVD 88 (286)
Q Consensus 79 ~ivid~st~~ 88 (286)
+++|++....
T Consensus 86 D~linnAg~~ 95 (262)
T PRK07984 86 DGFVHSIGFA 95 (262)
T ss_pred CEEEECCccC
Confidence 5777776543
|
|
| >PRK08177 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.76 E-value=1.5 Score=36.23 Aligned_cols=30 Identities=13% Similarity=0.037 Sum_probs=26.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
+|..+++.|++.|++|.+.+|++++.+.+.
T Consensus 13 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 42 (225)
T PRK08177 13 LGLGLVDRLLERGWQVTATVRGPQQDTALQ 42 (225)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCcchHHHH
Confidence 789999999999999999999987765543
|
|
| >PRK06949 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.72 E-value=3 Score=34.95 Aligned_cols=30 Identities=13% Similarity=0.183 Sum_probs=26.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|++.|++|++.+|++++.+.+.
T Consensus 21 IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~ 50 (258)
T PRK06949 21 LGARFAQVLAQAGAKVVLASRRVERLKELR 50 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999988776654
|
|
| >cd05293 LDH_1 A subgroup of L-lactate dehydrogenases | Back alignment and domain information |
|---|
Probab=85.69 E-value=1.6 Score=38.32 Aligned_cols=55 Identities=13% Similarity=0.112 Sum_probs=39.1
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHH----c-------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAK----E-------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~----~-------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||.++|..|+..|. ++.++|+++++++..+. . .+..+.++++ +++||+||++...
T Consensus 14 VG~~~a~~l~~~~~~~el~LiD~~~~~~~g~a~Dl~~~~~~~~~~~v~~~~dy~~-~~~adivvitaG~ 81 (312)
T cd05293 14 VGMACAISILAKGLADELVLVDVVEDKLKGEAMDLQHGSAFLKNPKIEADKDYSV-TANSKVVIVTAGA 81 (312)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCccHHHHHHHHHHHhhccCCCCEEEECCCHHH-hCCCCEEEECCCC
Confidence 79999999988876 79999998876533221 1 1232356665 7899999997653
|
L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase | Back alignment and domain information |
|---|
Probab=85.68 E-value=1.8 Score=40.03 Aligned_cols=52 Identities=17% Similarity=0.206 Sum_probs=36.9
Q ss_pred HHHHHHHHhCCCcEEEEcCCch--HHHHHHHcCCccc--CCHHHHhhcCcEEEEec
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTD--ASQTLAKEGANMA--LSLSTLASGAEFIISML 55 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~--~~~~l~~~g~~~~--~s~~e~~~~adivi~~v 55 (286)
++||+.|.+.|++|+++|.++. ..+.+.+.|++.. .+.....+++|+||.+-
T Consensus 13 ~~la~~l~~~G~~V~~~D~~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~Sp 68 (448)
T TIGR01081 13 GGLAMIAKQLGHEVTGSDANVYPPMSTQLEAQGIEIIEGFDAAQLEPKPDLVVIGN 68 (448)
T ss_pred HHHHHHHHhCCCEEEEECCCCCcHHHHHHHHCCCEEeCCCCHHHCCCCCCEEEECC
Confidence 5789999999999999997653 2335666687664 34445455799887654
|
Alternate name: murein tripeptide ligase |
| >PLN02780 ketoreductase/ oxidoreductase | Back alignment and domain information |
|---|
Probab=85.42 E-value=0.91 Score=40.03 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=27.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||.++|+.|+++|++|.+++|++++.+.+.
T Consensus 65 IG~alA~~La~~G~~Vil~~R~~~~l~~~~ 94 (320)
T PLN02780 65 IGKGFAFQLARKGLNLVLVARNPDKLKDVS 94 (320)
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHH
Confidence 799999999999999999999998876654
|
|
| >COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=85.35 E-value=8.7 Score=33.06 Aligned_cols=89 Identities=20% Similarity=0.195 Sum_probs=66.4
Q ss_pred HHhCCCcEEEEc---CCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 10 LQFQGHDVIVYD---KNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 10 L~~~G~~V~~~d---r~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
|.+.|-+|++.. .|+...+.|.+.|+.+.+.+.++=++.-+||.+-.-++++++-+. .+|-.++|.+-
T Consensus 27 l~~~g~pIyv~~eIVHN~~Vv~~L~~~g~~fve~l~e~p~~~~VIfsAHGVs~~v~~~a~---------~r~l~v~DATC 97 (294)
T COG0761 27 LEEYGAPIYVRHEIVHNRYVVDRLREKGAIFVEELDEVPDGATVIFSAHGVSPAVREEAK---------ERGLKVIDATC 97 (294)
T ss_pred HHHcCCCeEEEeccccCHHHHHHHHHcCCEeccccccCCCCCEEEEECCCCCHHHHHHHH---------HCCCEEEecCC
Confidence 344577877763 577889999999988888888877777778887777777776654 36778999877
Q ss_pred CCchHHHHHHHHHHhcCCceE
Q psy764 87 VDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 87 ~~p~~~~~~~~~~~~~g~~~~ 107 (286)
..........+...+.|...+
T Consensus 98 PlVtKvh~~v~~~~~~G~~iI 118 (294)
T COG0761 98 PLVTKVHKEVERYAREGYEII 118 (294)
T ss_pred CcchHHHHHHHHHHhCCCEEE
Confidence 777777777777777775544
|
|
| >PRK06500 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.08 E-value=3.1 Score=34.63 Aligned_cols=30 Identities=10% Similarity=0.078 Sum_probs=25.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
+|..+++.|++.|++|++.+|++++.+.+.
T Consensus 18 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 47 (249)
T PRK06500 18 IGLETARQFLAEGARVAITGRDPASLEAAR 47 (249)
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHH
Confidence 789999999999999999999987665543
|
|
| >COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=85.04 E-value=3.8 Score=36.64 Aligned_cols=82 Identities=22% Similarity=0.353 Sum_probs=49.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHH-cCCcccCCHHH---------Hh--hcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAK-EGANMALSLST---------LA--SGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~-~g~~~~~s~~e---------~~--~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||...+..+...|. +|++.|++++|.+..++ .|.....+..+ .- ..+|++|-|+..+..+.+.+.
T Consensus 180 IGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~~~~~~~~~~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~-- 257 (350)
T COG1063 180 IGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGADVVVNPSEDDAGAEILELTGGRGADVVIEAVGSPPALDQALE-- 257 (350)
T ss_pred HHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCeEeecCccccHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHH--
Confidence 56666555666674 78888999999988877 45443332211 11 248888888886655555443
Q ss_pred ccccccCCCCCEEEEcCCCCch
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQ 90 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~ 90 (286)
.++++-.++..+...+.
T Consensus 258 -----~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 258 -----ALRPGGTVVVVGVYGGE 274 (350)
T ss_pred -----HhcCCCEEEEEeccCCc
Confidence 34555555555554333
|
|
| >PRK05875 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.98 E-value=1.7 Score=36.96 Aligned_cols=30 Identities=23% Similarity=0.153 Sum_probs=25.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
+|..+++.|+++|++|.+.+|++++.+.+.
T Consensus 19 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 48 (276)
T PRK05875 19 IGKGVAAGLVAAGAAVMIVGRNPDKLAAAA 48 (276)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 789999999999999999999987665543
|
|
| >PRK05472 redox-sensing transcriptional repressor Rex; Provisional | Back alignment and domain information |
|---|
Probab=84.97 E-value=0.79 Score=37.85 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=35.0
Q ss_pred ccHHHHHHH--HhCCCcEEE-EcCCchHHHHHHHcC--CcccCCHHHHhhc--CcEEEEecCChh
Q psy764 2 ISTLKLFFL--QFQGHDVIV-YDKNTDASQTLAKEG--ANMALSLSTLASG--AEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L--~~~G~~V~~-~dr~~~~~~~l~~~g--~~~~~s~~e~~~~--adivi~~v~~~~ 59 (286)
+|..+++.+ ...|+++.+ +|+++++..... .| +...+++.+.+++ .|++++|+|+..
T Consensus 95 iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i-~g~~v~~~~~l~~li~~~~iD~ViIa~P~~~ 158 (213)
T PRK05472 95 LGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKI-GGIPVYHIDELEEVVKENDIEIGILTVPAEA 158 (213)
T ss_pred HHHHHHHhhhcccCCcEEEEEEECChhhcCCEe-CCeEEcCHHHHHHHHHHCCCCEEEEeCCchh
Confidence 455666542 245777665 588877653222 12 2233456777654 999999999754
|
|
| >PRK10569 NAD(P)H-dependent FMN reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.89 E-value=10 Score=30.77 Aligned_cols=135 Identities=10% Similarity=-0.017 Sum_probs=65.8
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcC--CcccCCHHHHhhcCcEEEEecCCh-----hHHHHHhcCCccccccCCC
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEG--ANMALSLSTLASGAEFIISMLPAS-----QDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--~~~~~s~~e~~~~adivi~~v~~~-----~~~~~v~~~~~~l~~~l~~ 77 (286)
..+..+.++|++|..+|...-..+.+.... ........+.++++|.||++.|.. ..++..++. +......
T Consensus 22 ~~~~~l~~~g~ev~~idL~~l~~~~~~~~~~~~~~~~~~~~~i~~AD~iIi~tP~Y~~s~pg~LKn~iD~---l~~~~l~ 98 (191)
T PRK10569 22 YAREWLNGLGVEVYHWNLQNFAPEDLLYARFDSPALKTFTEQLAQADGLIVATPVYKASFSGALKTLLDL---LPERALE 98 (191)
T ss_pred HHHHHHHhCCCEEEEEEccCCChHHHHhccCCCHHHHHHHHHHHHCCEEEEECCccCCCCCHHHHHHHHh---CChhhhC
Confidence 344555668999988876533333332211 112223445677999999999943 346666653 2112234
Q ss_pred CCEEEEcC-CCCchHHHHHH----HHHHhcCCceEeccCCCCHHhhh-cCceEEEecCCHhhHHHHHHHHHHhc
Q psy764 78 GVIVIDSS-TVDPQVPQTLS----NLAREKQITFLDAPVSGGTKAAQ-EATLTFMVGGDKSSLEKAKPILKCMG 145 (286)
Q Consensus 78 g~ivid~s-t~~p~~~~~~~----~~~~~~g~~~~~~pv~g~~~~a~-~g~l~~~~gg~~~~~~~~~~ll~~~g 145 (286)
|+.+.-.+ +..+.....+. ..+...+...+..+++....... ... .-.+ |++..++++.+++.+-
T Consensus 99 ~K~v~iiat~G~~~~~~~~~~~lr~~l~~l~a~~~~~~~~~~~~~~~~~d~-~~~~--d~~~~~rl~~~~~~~~ 169 (191)
T PRK10569 99 HKVVLPLATGGSVAHMLAVDYALKPVLSALKAQEILHGVFADDSQVIDYHH-QPQF--TPNLQTRLDEALETFW 169 (191)
T ss_pred CCEEEEEEecCCchhHHHHHHHHHHHHHHcCCeecCceEEEechhhhcccc-cccc--CHHHHHHHHHHHHHHH
Confidence 55444333 34454443332 33334444444333333222211 000 0111 6666677766666663
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=84.78 E-value=3.8 Score=36.42 Aligned_cols=36 Identities=22% Similarity=0.442 Sum_probs=24.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcC---CchHHHHHHHcCCcc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK---NTDASQTLAKEGANM 37 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr---~~~~~~~l~~~g~~~ 37 (286)
||...+..+...|.+|++.+| ++++.+.+.+.|+..
T Consensus 184 vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~~ 222 (355)
T cd08230 184 IGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGATY 222 (355)
T ss_pred HHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCEE
Confidence 456666666667888888887 567777666667543
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=84.66 E-value=4.8 Score=37.86 Aligned_cols=90 Identities=20% Similarity=0.244 Sum_probs=58.2
Q ss_pred HHHHHHhCCCcEEEEcC----CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 6 KLFFLQFQGHDVIVYDK----NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 6 lA~~L~~~G~~V~~~dr----~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.++.|.+.||+|.+=.- ..=.-+...+.|+++.++ .++ .+||+|+ .|..|.. ++ .+.+++|+++
T Consensus 21 ~v~~L~k~G~~V~VE~gAG~~a~fsD~~Y~~aGA~I~~~-~~~-~~adiIl-kV~~P~~-~e--------~~~l~~g~tl 88 (511)
T TIGR00561 21 TVQQLLKLGFDVLVETGAGAKASFADRAFESAGAGIVDG-TLF-WQSDIIL-KVNAPSD-AE--------IAELPAGKAL 88 (511)
T ss_pred HHHHHHhCCCEEEEECCCCcCCCcCHHHHHHcCCEEecc-cch-hcCCEEE-EeCCCCH-HH--------HHhcCCCCEE
Confidence 46788999999886421 000113456679999877 444 4789766 4544422 22 2347789999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
+-. ..|....++.+.+.++++..++.
T Consensus 89 i~~--l~p~~n~~ll~~l~~k~it~ia~ 114 (511)
T TIGR00561 89 VSF--IWPAQNPELMEKLAAKNITVLAM 114 (511)
T ss_pred EEE--cCccCCHHHHHHHHHcCCEEEEe
Confidence 855 44655677888888888877764
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK05854 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.64 E-value=2.4 Score=37.15 Aligned_cols=30 Identities=17% Similarity=0.091 Sum_probs=26.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+|+.|+++|++|++.+|+.++.+++.
T Consensus 26 IG~~~a~~La~~G~~Vil~~R~~~~~~~~~ 55 (313)
T PRK05854 26 LGLGLARRLAAAGAEVILPVRNRAKGEAAV 55 (313)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999988766553
|
|
| >PRK06398 aldose dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.63 E-value=1.8 Score=36.54 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=22.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD 25 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~ 25 (286)
||..+++.|++.|++|++.+|+.+
T Consensus 18 IG~~ia~~l~~~G~~Vi~~~r~~~ 41 (258)
T PRK06398 18 IGKAVVNRLKEEGSNVINFDIKEP 41 (258)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCcc
Confidence 799999999999999999998864
|
|
| >PRK15057 UDP-glucose 6-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.59 E-value=2.4 Score=38.49 Aligned_cols=58 Identities=21% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHh
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~ 65 (286)
..++..|.+.|.+|.+||.--+... -.++..++++.++++++|.|++..-++ .++.+-
T Consensus 319 ~~i~~~L~~~G~~v~~~DP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 376 (388)
T PRK15057 319 QGIMKRIKAKGVEVIIYEPVMKEDS---FFNSRLERDLATFKQQADVIISNRMAE-ELKDVA 376 (388)
T ss_pred HHHHHHHHhCCCEEEEECCCCCchh---hcCCeeeCCHHHHHHhCCEEEEcCCcH-HHHhhh
Confidence 4678899999999999998643332 337889999999999999999988874 666643
|
|
| >TIGR01771 L-LDH-NAD L-lactate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.51 E-value=2 Score=37.52 Aligned_cols=56 Identities=18% Similarity=0.224 Sum_probs=40.2
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHH----Hc------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLA----KE------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~----~~------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||.++|..|+..+. ++.++|++.++++..+ .. ..++..+.-+.+++||+||++-..
T Consensus 7 VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~i~~~~~~~~~daDivVitag~ 74 (299)
T TIGR01771 7 VGSSTAFALLNQGIADEIVLIDINKDKAEGEAMDLQHAASFLPTPKKIRSGDYSDCKDADLVVITAGA 74 (299)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHhhcccCCCeEEecCCHHHHCCCCEEEECCCC
Confidence 79999999988886 7999999887654332 11 133444445778999999998764
|
This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases. |
| >PRK08251 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.29 E-value=2.8 Score=34.95 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=26.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|+++|++|.+.+|++++.+.+.
T Consensus 14 iG~~la~~l~~~g~~v~~~~r~~~~~~~~~ 43 (248)
T PRK08251 14 LGAGMAREFAAKGRDLALCARRTDRLEELK 43 (248)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 789999999999999999999988766553
|
|
| >PRK05884 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.28 E-value=2.7 Score=34.72 Aligned_cols=31 Identities=19% Similarity=0.168 Sum_probs=27.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
||..+++.|++.|++|++.+|++++.+.+.+
T Consensus 12 iG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~ 42 (223)
T PRK05884 12 LGRTIAEGFRNDGHKVTLVGARRDDLEVAAK 42 (223)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 7999999999999999999999887766543
|
|
| >COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=84.24 E-value=0.96 Score=39.16 Aligned_cols=55 Identities=24% Similarity=0.198 Sum_probs=36.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH------HcCCcccCCHHHHhhcC-cEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA------KEGANMALSLSTLASGA-EFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~------~~g~~~~~s~~e~~~~a-divi~~v~ 56 (286)
+|+.++..|.++||+|.+.+|...+..... .....-.+...+.++.. |.||-+..
T Consensus 12 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~d~vih~aa 73 (314)
T COG0451 12 IGSHLVERLLAAGHDVRGLDRLRDGLDPLLSGVEFVVLDLTDRDLVDELAKGVPDAVIHLAA 73 (314)
T ss_pred HHHHHHHHHHhCCCeEEEEeCCCccccccccccceeeecccchHHHHHHHhcCCCEEEEccc
Confidence 799999999999999999999877654322 00111113344455566 88877664
|
|
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.15 E-value=5.3 Score=35.34 Aligned_cols=35 Identities=17% Similarity=0.242 Sum_probs=25.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGAN 36 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~ 36 (286)
+|...+..+...|. +|++.++++++.+.+.+.|+.
T Consensus 181 vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~ 216 (343)
T PRK09880 181 IGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGAD 216 (343)
T ss_pred HHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCc
Confidence 45556665666787 588899999988877777754
|
|
| >PRK05717 oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=84.10 E-value=3.5 Score=34.62 Aligned_cols=73 Identities=16% Similarity=0.146 Sum_probs=43.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.- -..+..+-.=+.++.+++..+.. +.+...+=.++
T Consensus 22 IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~g~id~l 88 (255)
T PRK05717 22 IGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL----------GENAWFIAMDVADEAQVAAGVAE---VLGQFGRLDAL 88 (255)
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc----------CCceEEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 799999999999999999999877655543210 01122233334555555555442 33222233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 89 i~~ag~ 94 (255)
T PRK05717 89 VCNAAI 94 (255)
T ss_pred EECCCc
Confidence 776543
|
|
| >PLN02989 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=84.09 E-value=2 Score=37.58 Aligned_cols=55 Identities=15% Similarity=0.184 Sum_probs=36.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH---H-cC-----------CcccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA---K-EG-----------ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~---~-~g-----------~~~~~s~~e~~~~adivi~~v~ 56 (286)
||+.+++.|++.|++|.+..|++++.+... . .+ +.-..+..+++++.|+||-+..
T Consensus 17 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~ 86 (325)
T PLN02989 17 IASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDEGSFELAIDGCETVFHTAS 86 (325)
T ss_pred HHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCchHHHHHHcCCCEEEEeCC
Confidence 799999999999999998888765433221 1 11 1112234566677888887764
|
|
| >PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=84.03 E-value=2.6 Score=35.49 Aligned_cols=75 Identities=17% Similarity=0.090 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh--hcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA--SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~--~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|++.|++|.+.+|+.++.+.+.+. +.+.. ....++-.-+.++.++..++.. +.+...+-+
T Consensus 14 IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~i~~~~~~---~~~~~~~id 83 (259)
T PRK12384 14 LGAFLCHGLAEEGYRVAVADINSEKAANVAQE-------INAEYGEGMAYGFGADATSEQSVLALSRG---VDEIFGRVD 83 (259)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHhcCCceeEEEEccCCCHHHHHHHHHH---HHHHcCCCC
Confidence 79999999999999999999997765544321 00000 1233444445566666666543 322222335
Q ss_pred EEEEcCC
Q psy764 80 IVIDSST 86 (286)
Q Consensus 80 ivid~st 86 (286)
.+|++..
T Consensus 84 ~vv~~ag 90 (259)
T PRK12384 84 LLVYNAG 90 (259)
T ss_pred EEEECCC
Confidence 6666543
|
|
| >PRK06914 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.95 E-value=2.7 Score=35.81 Aligned_cols=30 Identities=23% Similarity=0.225 Sum_probs=26.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
+|..+++.|+++|++|.+++|+++..+.+.
T Consensus 15 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 44 (280)
T PRK06914 15 FGLLTTLELAKKGYLVIATMRNPEKQENLL 44 (280)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHH
Confidence 789999999999999999999988766554
|
|
| >COG0074 SucD Succinyl-CoA synthetase, alpha subunit [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=83.94 E-value=4.5 Score=34.71 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=65.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|+...+.+++.|.++ +-..+|.+.-.. -.|..++++.+|+++ ++|+-++.||.+.+.+.+++. +-..+ ..
T Consensus 20 ~gtfh~~~~l~yGt~~-V~GvtPgkgG~~-~~g~PVf~tV~EA~~~~~a~~svI~Vp~~~aadai~EA---ida~i--~l 92 (293)
T COG0074 20 QGTFHTEQMLAYGTKI-VGGVTPGKGGQT-ILGLPVFNTVEEAVKETGANASVIFVPPPFAADAILEA---IDAGI--KL 92 (293)
T ss_pred cchHHHHHHHHhCCce-eecccCCCCceE-EcCccHHHHHHHHHHhhCCCEEEEecCcHHHHHHHHHH---HhCCC--cE
Confidence 5777777777777752 233444432111 125778889999886 589999999988887877763 21111 13
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
+++-+=.+.+....++.+.+++++...+
T Consensus 93 iv~ITEgIP~~D~~~~~~~a~~~g~~ii 120 (293)
T COG0074 93 VVIITEGIPVLDMLELKRYAREKGTRLI 120 (293)
T ss_pred EEEEeCCCCHHHHHHHHHHHHhcCCEEE
Confidence 4444456777888899999988886666
|
|
| >PRK06505 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.93 E-value=4.3 Score=34.69 Aligned_cols=24 Identities=17% Similarity=-0.017 Sum_probs=21.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD 25 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~ 25 (286)
||.++|+.|+++|++|.+.+|+.+
T Consensus 21 IG~aiA~~la~~Ga~V~~~~r~~~ 44 (271)
T PRK06505 21 IAWGIAKQLAAQGAELAFTYQGEA 44 (271)
T ss_pred HHHHHHHHHHhCCCEEEEecCchH
Confidence 799999999999999999988754
|
|
| >PRK06079 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.91 E-value=3.7 Score=34.55 Aligned_cols=73 Identities=14% Similarity=0.029 Sum_probs=41.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|++|.+.+|+....+.+.+.. . .....+-+=+.++++++++++. +.+...+=+++
T Consensus 21 IG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~----~------~~~~~~~~Dl~~~~~v~~~~~~---~~~~~g~iD~l 87 (252)
T PRK06079 21 IAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV----D------EEDLLVECDVASDESIERAFAT---IKERVGKIDGI 87 (252)
T ss_pred hHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc----c------CceeEEeCCCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 799999999999999999998843222222211 0 0112222224566677776653 33322233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+....
T Consensus 88 v~nAg~ 93 (252)
T PRK06079 88 VHAIAY 93 (252)
T ss_pred EEcccc
Confidence 665543
|
|
| >PRK07097 gluconate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.88 E-value=4.1 Score=34.46 Aligned_cols=75 Identities=13% Similarity=0.039 Sum_probs=43.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+++.+. ..+.-.+..++-.-+.+..+++.++.. +.+...+=..+
T Consensus 22 iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~l 91 (265)
T PRK07097 22 IGFAIAKAYAKAGATIVFNDINQELVDKGLAA-------YRELGIEAHGYVCDVTDEDGVQAMVSQ---IEKEVGVIDIL 91 (265)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHH-------HHhcCCceEEEEcCCCCHHHHHHHHHH---HHHhCCCCCEE
Confidence 78999999999999999999998776554321 000000122233334566666666653 33333333556
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 92 i~~ag 96 (265)
T PRK07097 92 VNNAG 96 (265)
T ss_pred EECCC
Confidence 66544
|
|
| >PRK09242 tropinone reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.83 E-value=1.3 Score=37.35 Aligned_cols=76 Identities=16% Similarity=0.034 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|++.|++|.+.+|+.+..+.+.+.- .+...+.++.++ =+.++.+++..+.. +.+...+=+
T Consensus 21 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l-------~~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~g~id 90 (257)
T PRK09242 21 IGLAIAREFLGLGADVLIVARDADALAQARDEL-------AEEFPEREVHGLAADVSDDEDRRAILDW---VEDHWDGLH 90 (257)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHH-------HhhCCCCeEEEEECCCCCHHHHHHHHHH---HHHHcCCCC
Confidence 789999999999999999999987766543221 111112233333 23445555555543 333333446
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
.+|++...
T Consensus 91 ~li~~ag~ 98 (257)
T PRK09242 91 ILVNNAGG 98 (257)
T ss_pred EEEECCCC
Confidence 77777654
|
|
| >PRK07832 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.82 E-value=3.5 Score=35.05 Aligned_cols=76 Identities=14% Similarity=0.142 Sum_probs=44.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+|..+++.|++.|++|.+++|++++.+.+.+. +...- .....+..=+.++..++.++.. +.+...+=++
T Consensus 12 iG~~la~~la~~G~~vv~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~ 81 (272)
T PRK07832 12 IGRATALRLAAQGAELFLTDRDADGLAQTVAD-------ARALGGTVPEHRALDISDYDAVAAFAAD---IHAAHGSMDV 81 (272)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCCcceEEEeeCCCHHHHHHHHHH---HHHhcCCCCE
Confidence 68999999999999999999998766554321 00000 0011122335556666666553 3333333357
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 82 lv~~ag~ 88 (272)
T PRK07832 82 VMNIAGI 88 (272)
T ss_pred EEECCCC
Confidence 7776643
|
|
| >TIGR00216 ispH_lytB (E)-4-hydroxy-3-methyl-but-2-enyl pyrophosphate reductase (IPP and DMAPP forming) | Back alignment and domain information |
|---|
Probab=83.75 E-value=11 Score=32.47 Aligned_cols=87 Identities=18% Similarity=0.223 Sum_probs=63.6
Q ss_pred hCCCcEEEEc---CCchHHHHHHHcCC-cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 12 FQGHDVIVYD---KNTDASQTLAKEGA-NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 12 ~~G~~V~~~d---r~~~~~~~l~~~g~-~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
+.|.+|+.+. .|+..+++|.+.|+ ...+++.++-+++-+||-+=.-+.++.+-+. .+|-.+||.+=.
T Consensus 27 ~~~~~iy~lG~iIHN~~Vv~~L~~~Gv~~~v~~~~~v~~~~~ViirAHGv~~~~~~~~~---------~~gl~viDaTCP 97 (280)
T TIGR00216 27 ESGKPVYTLGPIVHNPQVVERLRERGVFFFLEDLDEVAAGDTVIIRAHGVPPEVREELE---------KKGLEVIDATCP 97 (280)
T ss_pred hcCCCeEEecCCccCHHHHHHHHHCCCEEeecCcccCCCCCEEEEeCCCCCHHHHHHHH---------HCCCeEEeCCCc
Confidence 3366788874 68999999999996 6667887776566677776666655555443 257789999888
Q ss_pred CchHHHHHHHHHHhcCCceE
Q psy764 88 DPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 88 ~p~~~~~~~~~~~~~g~~~~ 107 (286)
.....+...+.+.+.|...+
T Consensus 98 ~V~kv~~~v~~~~~~Gy~ii 117 (280)
T TIGR00216 98 LVTKVHNAVKKYAKEGYHVI 117 (280)
T ss_pred ccHHHHHHHHHHHhCCCEEE
Confidence 88888888888888875433
|
Escherichia coli LytB protein had been found to regulate the activity of RelA (guanosine 3',5'-bispyrophosphate synthetase I), which in turn controls the level of a regulatory metabolite. It is involved in penicillin tolerance and the stringent response. |
| >PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=83.68 E-value=1 Score=39.96 Aligned_cols=78 Identities=13% Similarity=0.051 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCCcEE---EEcCCchHHH-HHHHcC--CcccC-CHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQGHDVI---VYDKNTDASQ-TLAKEG--ANMAL-SLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~---~~dr~~~~~~-~l~~~g--~~~~~-s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
+|..+.+.|.+.+|++. .. .+.+.+. .+.-.| ..+.+ +..+ ++++|++|+|+|.. ....+... .
T Consensus 16 vG~eLlrlL~~~~hP~~~l~~v-~s~~~aG~~l~~~~~~l~~~~~~~~~-~~~vD~vFla~p~~-~s~~~v~~------~ 86 (336)
T PRK05671 16 VGEALVQILEERDFPVGTLHLL-ASSESAGHSVPFAGKNLRVREVDSFD-FSQVQLAFFAAGAA-VSRSFAEK------A 86 (336)
T ss_pred HHHHHHHHHhhCCCCceEEEEE-ECcccCCCeeccCCcceEEeeCChHH-hcCCCEEEEcCCHH-HHHHHHHH------H
Confidence 68888999988777432 33 2222221 111111 22221 2233 47899999999964 44444431 2
Q ss_pred CCCCCEEEEcCCCC
Q psy764 75 AKPGVIVIDSSTVD 88 (286)
Q Consensus 75 l~~g~ivid~st~~ 88 (286)
...|..|||.|+..
T Consensus 87 ~~~G~~VIDlS~~f 100 (336)
T PRK05671 87 RAAGCSVIDLSGAL 100 (336)
T ss_pred HHCCCeEEECchhh
Confidence 34688999998753
|
|
| >PRK07060 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.65 E-value=5.8 Score=32.87 Aligned_cols=31 Identities=26% Similarity=0.241 Sum_probs=26.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
+|..+++.|+++|++|++.+|++++.+.+.+
T Consensus 21 iG~~~a~~l~~~g~~V~~~~r~~~~~~~~~~ 51 (245)
T PRK07060 21 IGRACAVALAQRGARVVAAARNAAALDRLAG 51 (245)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 6899999999999999999999887765543
|
|
| >PRK06484 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.65 E-value=2.9 Score=39.39 Aligned_cols=72 Identities=13% Similarity=0.192 Sum_probs=46.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.|+++|++|++.+|++++.+.+.+. +. ....+-.=+.++++++.++.. +.+...+=++
T Consensus 281 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~ 346 (520)
T PRK06484 281 IGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALGD-----------EHLSVQADITDEAAVESAFAQ---IQARWGRLDV 346 (520)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC-----------ceeEEEccCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999999999998887766543 11 111233335566667776653 3333333357
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 347 li~nAg~ 353 (520)
T PRK06484 347 LVNNAGI 353 (520)
T ss_pred EEECCCC
Confidence 7776544
|
|
| >PLN02686 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=83.61 E-value=1.8 Score=38.91 Aligned_cols=29 Identities=14% Similarity=0.075 Sum_probs=24.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||+.+++.|+++||+|.+..|+.++.+.+
T Consensus 65 IG~~lv~~L~~~G~~V~~~~r~~~~~~~l 93 (367)
T PLN02686 65 LGLAIVDRLLRHGYSVRIAVDTQEDKEKL 93 (367)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 79999999999999999888877655444
|
|
| >KOG4230|consensus | Back alignment and domain information |
|---|
Probab=83.42 E-value=2.5 Score=39.86 Aligned_cols=40 Identities=28% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.+++|.+.++|+||.++.-|+-++. +.++||.++||+...
T Consensus 197 ~~lae~v~~ADIvIvAiG~PefVKg---------dWiKpGavVIDvGIN 236 (935)
T KOG4230|consen 197 RNLAEKVSRADIVIVAIGQPEFVKG---------DWIKPGAVVIDVGIN 236 (935)
T ss_pred ccHHHHhccCCEEEEEcCCcceeec---------ccccCCcEEEEcccc
Confidence 4678889999999999998765443 346789999999754
|
|
| >PRK05855 short chain dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=83.40 E-value=2.5 Score=40.13 Aligned_cols=76 Identities=12% Similarity=0.066 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|+.++.+.+.+.- .+.-.+..++-+=+.++++++.++.. +.+...+=+++
T Consensus 327 iG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~Dv~~~~~~~~~~~~---~~~~~g~id~l 396 (582)
T PRK05855 327 IGRETALAFAREGAEVVASDIDEAAAERTAELI-------RAAGAVAHAYRVDVSDADAMEAFAEW---VRAEHGVPDIV 396 (582)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-------HhcCCeEEEEEcCCCCHHHHHHHHHH---HHHhcCCCcEE
Confidence 799999999999999999999987766554320 00001122333345666777777653 33333333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 397 v~~Ag~ 402 (582)
T PRK05855 397 VNNAGI 402 (582)
T ss_pred EECCcc
Confidence 777654
|
|
| >PRK07533 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=83.40 E-value=4.6 Score=34.09 Aligned_cols=25 Identities=20% Similarity=0.004 Sum_probs=22.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA 26 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~ 26 (286)
||.++|+.|++.|++|.+.+|+.+.
T Consensus 24 IG~a~a~~la~~G~~v~l~~r~~~~ 48 (258)
T PRK07533 24 IAWGCARAFRALGAELAVTYLNDKA 48 (258)
T ss_pred HHHHHHHHHHHcCCEEEEEeCChhh
Confidence 7899999999999999998888543
|
|
| >PRK07453 protochlorophyllide oxidoreductase; Validated | Back alignment and domain information |
|---|
Probab=83.36 E-value=3 Score=36.59 Aligned_cols=75 Identities=17% Similarity=0.117 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|+.++.+.+.+. +.. . -....++.+=+.+..+++.++.. +.....+=+++
T Consensus 18 IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~-l~~-~-----~~~~~~~~~Dl~~~~~v~~~~~~---~~~~~~~iD~l 87 (322)
T PRK07453 18 VGLYAAKALAKRGWHVIMACRNLKKAEAAAQE-LGI-P-----PDSYTIIHIDLGDLDSVRRFVDD---FRALGKPLDAL 87 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-hhc-c-----CCceEEEEecCCCHHHHHHHHHH---HHHhCCCccEE
Confidence 79999999999999999999998877665432 110 0 01223444455666667766653 22222222566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|+...
T Consensus 88 i~nAg 92 (322)
T PRK07453 88 VCNAA 92 (322)
T ss_pred EECCc
Confidence 66543
|
|
| >PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3 | Back alignment and domain information |
|---|
Probab=83.21 E-value=1.2 Score=35.83 Aligned_cols=44 Identities=14% Similarity=0.385 Sum_probs=30.3
Q ss_pred CcEEEEcCCchHHHHHHH--------cC----CcccCCHHHHhhcCcEEEEecCCh
Q psy764 15 HDVIVYDKNTDASQTLAK--------EG----ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
-+|..+|+++++.+.... .| +..+.|.+++++++|+||.++--.
T Consensus 29 ~ei~L~Did~~RL~~~~~~~~~~~~~~~~~~~v~~ttd~~eAl~gADfVi~~irvG 84 (183)
T PF02056_consen 29 SEIVLMDIDEERLEIVERLARRMVEEAGADLKVEATTDRREALEGADFVINQIRVG 84 (183)
T ss_dssp EEEEEE-SCHHHHHHHHHHHHHHHHHCTTSSEEEEESSHHHHHTTESEEEE---TT
T ss_pred cEEEEEcCCHHHHHHHHHHHHHHHHhcCCCeEEEEeCCHHHHhCCCCEEEEEeeec
Confidence 379999999998653322 23 455789999999999999998643
|
2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A. |
| >PRK08339 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.20 E-value=1.5 Score=37.35 Aligned_cols=30 Identities=23% Similarity=0.212 Sum_probs=26.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||.++|+.|++.|++|.+.+|++++.+.+.
T Consensus 20 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~ 49 (263)
T PRK08339 20 IGFGVARVLARAGADVILLSRNEENLKKAR 49 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999988766554
|
|
| >PLN02986 cinnamyl-alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=83.20 E-value=2.6 Score=36.83 Aligned_cols=55 Identities=15% Similarity=0.195 Sum_probs=36.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHH---HHH-cC-----------CcccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQT---LAK-EG-----------ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~---l~~-~g-----------~~~~~s~~e~~~~adivi~~v~ 56 (286)
||+.+++.|++.||+|.+..|+.++.+. +.. .+ +.-..+..++++++|+||-+-.
T Consensus 17 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~d~vih~A~ 86 (322)
T PLN02986 17 IASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLEESSFEQAIEGCDAVFHTAS 86 (322)
T ss_pred HHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCCcchHHHHHhCCCEEEEeCC
Confidence 7999999999999999988777654332 221 11 1112345667778898887663
|
|
| >PRK05086 malate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=83.18 E-value=3.7 Score=36.12 Aligned_cols=56 Identities=14% Similarity=0.220 Sum_probs=36.9
Q ss_pred ccHHHHHHHHh---CCCcEEEEcCCchHH---HHHHHcC--Ccc----cCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQF---QGHDVIVYDKNTDAS---QTLAKEG--ANM----ALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~---~G~~V~~~dr~~~~~---~~l~~~g--~~~----~~s~~e~~~~adivi~~v~~ 57 (286)
||++++..|.. .++++.++||++... -.+...+ ..+ .+++.+.++++|+||+|...
T Consensus 12 VG~aia~~l~~~~~~~~el~L~d~~~~~~g~alDl~~~~~~~~i~~~~~~d~~~~l~~~DiVIitaG~ 79 (312)
T PRK05086 12 IGQALALLLKTQLPAGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDPTPALEGADVVLISAGV 79 (312)
T ss_pred HHHHHHHHHHcCCCCccEEEEEecCCCCcceehhhhcCCCCceEEEeCCCCHHHHcCCCCEEEEcCCC
Confidence 68888887744 346899999985431 1232212 111 34667788899999999875
|
|
| >PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed | Back alignment and domain information |
|---|
Probab=83.15 E-value=4.7 Score=33.38 Aligned_cols=73 Identities=15% Similarity=0.059 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+++.|+++|+.|.+.+|++++.+.+...- . ....++-.-+.+..+++.++.. +.+...+=+.+
T Consensus 18 iG~~la~~l~~~g~~v~~~~~~~~~~~~~~~~~----~------~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~v 84 (245)
T PRK12936 18 IGEEIARLLHAQGAIVGLHGTRVEKLEALAAEL----G------ERVKIFPANLSDRDEVKALGQK---AEADLEGVDIL 84 (245)
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----C------CceEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 689999999999999998899888776554320 0 1223333345566666666553 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 85 i~~ag~ 90 (245)
T PRK12936 85 VNNAGI 90 (245)
T ss_pred EECCCC
Confidence 777654
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.92 E-value=2.4 Score=38.92 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=40.9
Q ss_pred HHHHHHHHhCC-CcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHH
Q psy764 4 TLKLFFLQFQG-HDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLD 63 (286)
Q Consensus 4 ~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~ 63 (286)
..+++.|.++| .+|.+||..-........ +.....++.++++++|+|+++..++ +.++
T Consensus 343 ~~l~~~L~~~gg~~v~~~DP~~~~~~~~~~-~~~~~~~~~~~~~~ad~vvi~t~~~-~~~~ 401 (415)
T PRK11064 343 MEIAELIAQWHSGETLVVEPNIHQLPKKLD-GLVTLVSLDEALATADVLVMLVDHS-QFKA 401 (415)
T ss_pred HHHHHHHHhcCCcEEEEECCCCCchhhhcc-CceeeCCHHHHHhCCCEEEECCCCH-Hhcc
Confidence 46788999996 999999976433221111 1223478889999999999999985 4444
|
|
| >PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated | Back alignment and domain information |
|---|
Probab=82.86 E-value=4.8 Score=35.83 Aligned_cols=104 Identities=12% Similarity=0.144 Sum_probs=57.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc----------CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE----------GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~----------g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~ 68 (286)
+|+.+|.+|++.|. ++.++|.+.-....+... |..-+....+.++ +.++-+......-..+.+
T Consensus 35 lGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~Ka~aa~~~l~~inp~v~v~~~~~~~~~~~~---- 110 (339)
T PRK07688 35 LGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPKAVAAKKRLEEINSDVRVEAIVQDVTAEEL---- 110 (339)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcHHHHHHHHHHHHCCCcEEEEEeccCCHHHH----
Confidence 68999999999998 899999875433333221 1011111112222 344444444321111111
Q ss_pred ccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCC
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
.+.+..-++|||++. .+.+...+.+.+.+.++.++.+-+.+
T Consensus 111 ---~~~~~~~DlVid~~D-n~~~r~~ln~~~~~~~iP~i~~~~~g 151 (339)
T PRK07688 111 ---EELVTGVDLIIDATD-NFETRFIVNDAAQKYGIPWIYGACVG 151 (339)
T ss_pred ---HHHHcCCCEEEEcCC-CHHHHHHHHHHHHHhCCCEEEEeeee
Confidence 111334579999855 45555667777778888888765444
|
|
| >PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.82 E-value=4 Score=33.81 Aligned_cols=29 Identities=14% Similarity=0.180 Sum_probs=25.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
+|..+++.|++.|++|.+.+|++++.+.+
T Consensus 19 iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~ 47 (239)
T PRK07666 19 IGRAVAIALAKEGVNVGLLARTEENLKAV 47 (239)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999999999999999999998766554
|
|
| >PLN02427 UDP-apiose/xylose synthase | Back alignment and domain information |
|---|
Probab=82.82 E-value=1.8 Score=39.14 Aligned_cols=54 Identities=20% Similarity=0.194 Sum_probs=38.0
Q ss_pred ccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHcC-------Ccc-------cCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKEG-------ANM-------ALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g-------~~~-------~~s~~e~~~~adivi~~v 55 (286)
||+.+++.|+++ |++|.+.+|+.++...+...+ ++. ..++.++++++|+||=+.
T Consensus 26 IGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~~d~ViHlA 94 (386)
T PLN02427 26 IGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKHDSRLEGLIKMADLTINLA 94 (386)
T ss_pred HHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCChHHHHHHhhcCCEEEEcc
Confidence 799999999998 599999999877765553321 111 123456677899888765
|
|
| >PRK06197 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.76 E-value=2.9 Score=36.36 Aligned_cols=29 Identities=17% Similarity=0.186 Sum_probs=25.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||..+++.|++.|++|++.+|+.++.+..
T Consensus 28 IG~~~a~~l~~~G~~vi~~~r~~~~~~~~ 56 (306)
T PRK06197 28 LGYETAAALAAKGAHVVLAVRNLDKGKAA 56 (306)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 79999999999999999999998775543
|
|
| >PRK06841 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.76 E-value=4.4 Score=33.88 Aligned_cols=73 Identities=19% Similarity=0.171 Sum_probs=43.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|+++..+...+.. . .....+..-+.++.+++.++.. +.+...+=+.+
T Consensus 27 IG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~~----~------~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~~d~v 93 (255)
T PRK06841 27 IGHAIAELFAAKGARVALLDRSEDVAEVAAQLL----G------GNAKGLVCDVSDSQSVEAAVAA---VISAFGRIDIL 93 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhh----C------CceEEEEecCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 789999999999999999999876433222110 0 1112333445556666666543 33323334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 94 i~~ag~ 99 (255)
T PRK06841 94 VNSAGV 99 (255)
T ss_pred EECCCC
Confidence 777654
|
|
| >PRK07889 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.71 E-value=4.8 Score=33.97 Aligned_cols=73 Identities=16% Similarity=0.063 Sum_probs=42.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc--hHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT--DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~--~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|++.|++|++.+|+. +..+.+.+.- . ..+..+-+=+.++.+++.++.. +.+...+=+
T Consensus 21 IG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~----~------~~~~~~~~Dv~~~~~i~~~~~~---~~~~~g~iD 87 (256)
T PRK07889 21 IAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRL----P------EPAPVLELDVTNEEHLASLADR---VREHVDGLD 87 (256)
T ss_pred HHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhc----C------CCCcEEeCCCCCHHHHHHHHHH---HHHHcCCCc
Confidence 78999999999999999998764 3344443210 0 0223333345566667776653 332222234
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|+...+
T Consensus 88 ~li~nAG~ 95 (256)
T PRK07889 88 GVVHSIGF 95 (256)
T ss_pred EEEEcccc
Confidence 66665544
|
|
| >PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.65 E-value=4.1 Score=34.28 Aligned_cols=74 Identities=11% Similarity=0.062 Sum_probs=41.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|+ ++.+.+.+.- .+.-....++-.=+.+..+++.++.. +.+...+=+.+
T Consensus 27 IG~~ia~~l~~~G~~v~~~~~~-~~~~~~~~~~-------~~~~~~~~~~~~D~~~~~~i~~~~~~---~~~~~g~id~l 95 (258)
T PRK06935 27 LGQGYAVALAKAGADIIITTHG-TNWDETRRLI-------EKEGRKVTFVQVDLTKPESAEKVVKE---ALEEFGKIDIL 95 (258)
T ss_pred HHHHHHHHHHHCCCEEEEEeCC-cHHHHHHHHH-------HhcCCceEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 7999999999999999999988 4433332210 00001122333345555666666553 33322233566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|++..
T Consensus 96 i~~ag 100 (258)
T PRK06935 96 VNNAG 100 (258)
T ss_pred EECCC
Confidence 76654
|
|
| >PRK06703 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=82.61 E-value=12 Score=28.79 Aligned_cols=88 Identities=13% Similarity=-0.000 Sum_probs=48.2
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCCh------hHHHHHhcCCccccccCCC
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPAS------QDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~------~~~~~v~~~~~~l~~~l~~ 77 (286)
..++..|...|++|.+.+.+.. +. +.+.+.|.|+++.|+. ..+...+.. +.....+
T Consensus 20 ~~ia~~l~~~g~~v~~~~~~~~--------------~~-~~l~~~d~viigspt~~~g~~p~~~~~f~~~---l~~~~l~ 81 (151)
T PRK06703 20 DLIKVSLDAFDHEVVLQEMDGM--------------DA-EELLAYDGIILGSYTWGDGDLPYEAEDFHED---LENIDLS 81 (151)
T ss_pred HHHHHHHHhcCCceEEEehhhC--------------CH-HHHhcCCcEEEEECCCCCCcCcHHHHHHHHH---HhcCCCC
Confidence 3455555566666666654321 11 1256788888888753 235555542 2221224
Q ss_pred CCEEEEcCCCC------chHHHHHHHHHHhcCCceEec
Q psy764 78 GVIVIDSSTVD------PQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 78 g~ivid~st~~------p~~~~~~~~~~~~~g~~~~~~ 109 (286)
++.+.-.++.. ....+.+.+.+.+.|..++..
T Consensus 82 ~k~~~vfg~g~~~y~~~~~a~~~l~~~l~~~G~~~~~~ 119 (151)
T PRK06703 82 GKKVAVFGSGDTAYPLFCEAVTIFEERLVERGAELVQE 119 (151)
T ss_pred CCEEEEEccCCCChHHHHHHHHHHHHHHHHCCCEEccc
Confidence 55444444432 134455778888888877653
|
|
| >PRK08017 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.58 E-value=1.6 Score=36.55 Aligned_cols=31 Identities=16% Similarity=0.161 Sum_probs=26.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
||..+++.|+++|++|.+.+|++++.+.+.+
T Consensus 14 IG~~la~~l~~~g~~v~~~~r~~~~~~~~~~ 44 (256)
T PRK08017 14 IGLEAALELKRRGYRVLAACRKPDDVARMNS 44 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHhHHHHh
Confidence 7999999999999999999999887765543
|
|
| >PRK06756 flavodoxin; Provisional | Back alignment and domain information |
|---|
Probab=82.57 E-value=20 Score=27.45 Aligned_cols=87 Identities=15% Similarity=0.046 Sum_probs=49.1
Q ss_pred HhhcCcEEEEecCChh------HHHHHhcCCccccccCCCCCEEEEcCCCC------chHHHHHHHHHHhcCCceEeccC
Q psy764 44 LASGAEFIISMLPASQ------DVLDAYDGSDGILKHAKPGVIVIDSSTVD------PQVPQTLSNLAREKQITFLDAPV 111 (286)
Q Consensus 44 ~~~~adivi~~v~~~~------~~~~v~~~~~~l~~~l~~g~ivid~st~~------p~~~~~~~~~~~~~g~~~~~~pv 111 (286)
.+.++|.|+++.|+.. .+...+.. +...-.+|+.+.-.+|.. ....+.+.+.+.+.|+.++..|+
T Consensus 46 ~~~~~d~vi~gspt~~~g~~p~~~~~fl~~---l~~~~l~~k~~~~fgt~~~~y~~~~~a~~~l~~~l~~~g~~~v~~~~ 122 (148)
T PRK06756 46 ILEQYDGIILGAYTWGDGDLPDDFLDFYDA---MDSIDLTGKKAAVFGSCDSAYPKYGVAVDILIEKLQERGAAVVLEGL 122 (148)
T ss_pred HHhcCCeEEEEeCCCCCCCCcHHHHHHHHH---HhcCCCCCCEEEEEeCCCCchHHHHHHHHHHHHHHHHCCCEEcCCCe
Confidence 3568899999988632 34555442 222122455555444422 25566788888888988775432
Q ss_pred CCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhc
Q psy764 112 SGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMG 145 (286)
Q Consensus 112 ~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g 145 (286)
. +-..-+++.++.++.+-+.+.
T Consensus 123 ~------------~~~~p~~~d~~~~~~~~~~~~ 144 (148)
T PRK06756 123 K------------VELTPEDEDVEKCLQFGAEFV 144 (148)
T ss_pred E------------EecCCCHHHHHHHHHHHHHHH
Confidence 1 111224556666666655543
|
|
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=82.54 E-value=8.3 Score=32.18 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=25.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA 35 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~ 35 (286)
+|..++..+...|.+|++.++++++.+.+.+.|.
T Consensus 146 ~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~ 179 (271)
T cd05188 146 VGLLAAQLAKAAGARVIVTDRSDEKLELAKELGA 179 (271)
T ss_pred HHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCC
Confidence 4667777777788999999999888777766553
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >cd01487 E1_ThiF_like E1_ThiF_like | Back alignment and domain information |
|---|
Probab=82.51 E-value=5.5 Score=31.73 Aligned_cols=101 Identities=12% Similarity=0.072 Sum_probs=52.3
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-------CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-------GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-------g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
+|+.++.+|++.|. +++++|.+.-....+.+. |-.-+....+.++ +.++=+.+.+..-.-+. +
T Consensus 10 lGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~~~-------~ 82 (174)
T cd01487 10 LGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDENN-------L 82 (174)
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecChhh-------H
Confidence 68999999999998 599999886222222211 1111111111111 23333333332111011 1
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhc-CCceEecc
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREK-QITFLDAP 110 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~-g~~~~~~p 110 (286)
.+.+..-++||++ +-.+.....+.+.+.++ ++.++.+-
T Consensus 83 ~~~l~~~DlVi~~-~d~~~~r~~i~~~~~~~~~ip~i~~~ 121 (174)
T cd01487 83 EGLFGDCDIVVEA-FDNAETKAMLAESLLGNKNKPVVCAS 121 (174)
T ss_pred HHHhcCCCEEEEC-CCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 1123345789988 55566556566666665 88777653
|
Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown. |
| >cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases | Back alignment and domain information |
|---|
Probab=82.48 E-value=3.9 Score=36.22 Aligned_cols=56 Identities=11% Similarity=-0.025 Sum_probs=37.1
Q ss_pred ccHHHHHHHHhCC-------CcEEEEcCCch--HHHH----HHH------cCCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQG-------HDVIVYDKNTD--ASQT----LAK------EGANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G-------~~V~~~dr~~~--~~~~----l~~------~g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|+.++..|...+ .+|.++|+++. +.+. +.. ..+....++.+.+++||+||++-..
T Consensus 14 VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~~g~~~Dl~d~~~~~~~~~~~~~~~~~~l~~aDiVI~tAG~ 88 (325)
T cd01336 14 IAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKALEGVVMELQDCAFPLLKSVVATTDPEEAFKDVDVAILVGAM 88 (325)
T ss_pred HHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccccceeeehhhccccccCCceecCCHHHHhCCCCEEEEeCCc
Confidence 6889999998754 48999999653 2221 111 0122345667888999999988653
|
MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09072 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.41 E-value=4.9 Score=33.90 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+.+...- .. . .+..++-.-+.++.+++.+... +.. ..+=+.+
T Consensus 17 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~-~------~~~~~~~~D~~d~~~~~~~~~~---~~~-~~~id~l 84 (263)
T PRK09072 17 IGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY-P------GRHRWVVADLTSEAGREAVLAR---ARE-MGGINVL 84 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc-C------CceEEEEccCCCHHHHHHHHHH---HHh-cCCCCEE
Confidence 789999999999999999999988766554321 00 0 1222333345566666666543 222 2233566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 85 v~~ag~ 90 (263)
T PRK09072 85 INNAGV 90 (263)
T ss_pred EECCCC
Confidence 665443
|
|
| >PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.24 E-value=6.1 Score=33.11 Aligned_cols=70 Identities=13% Similarity=0.111 Sum_probs=42.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC-chHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN-TDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~-~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|++.|++|.+..++ ++..+.+... +...+-.=+.++.+++.++.. +.+...+=++
T Consensus 19 IG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~-------------~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~ 82 (255)
T PRK06463 19 IGRAIAEAFLREGAKVAVLYNSAENEAKELREK-------------GVFTIKCDVGNRDQVKKSKEV---VEKEFGRVDV 82 (255)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHhC-------------CCeEEEecCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 7999999999999999887554 3333433321 123344445666677776653 3333333467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 83 li~~ag~ 89 (255)
T PRK06463 83 LVNNAGI 89 (255)
T ss_pred EEECCCc
Confidence 7776544
|
|
| >COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.19 E-value=2.4 Score=35.78 Aligned_cols=54 Identities=24% Similarity=0.241 Sum_probs=44.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC-------cccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA-------NMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~-------~~~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+.+.|.+.||+|.+..|++++...+. .++ .-..++..++++.|.++++.+
T Consensus 12 ~G~~~~~~L~~~~~~v~~~~r~~~~~~~~~-~~v~~~~~d~~~~~~l~~a~~G~~~~~~i~~ 72 (275)
T COG0702 12 VGGAVVRELLARGHEVRAAVRNPEAAAALA-GGVEVVLGDLRDPKSLVAGAKGVDGVLLISG 72 (275)
T ss_pred hHHHHHHHHHhCCCEEEEEEeCHHHHHhhc-CCcEEEEeccCCHhHHHHHhccccEEEEEec
Confidence 799999999999999999999999988877 443 333456677788998888887
|
|
| >PRK10537 voltage-gated potassium channel; Provisional | Back alignment and domain information |
|---|
Probab=82.17 E-value=7.5 Score=35.39 Aligned_cols=97 Identities=14% Similarity=0.055 Sum_probs=54.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-cC--CHHHH-----hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-AL--SLSTL-----ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~--s~~e~-----~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.++|+++.+.+.++ .+.....|... .. +-.+. +++|+.|+++.+++..-..+.. ...
T Consensus 251 lg~~v~~~L~~~g~~vvVId~d~--~~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~dD~~Nl~ivL----~ar 324 (393)
T PRK10537 251 LAINTYLGLRQRGQAVTVIVPLG--LEHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRDNDADNAFVVL----AAK 324 (393)
T ss_pred HHHHHHHHHHHCCCCEEEEECch--hhhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCCChHHHHHHHH----HHH
Confidence 57889999999999999988663 23333333211 11 11222 4588999998887654333332 122
Q ss_pred cCCC-CCEEEEcCCCCchHHHHHHHHHHhcCCceEecc
Q psy764 74 HAKP-GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 110 (286)
Q Consensus 74 ~l~~-g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~p 110 (286)
.+.| .++++-+.+ ++ -.+.+.+.|+..+=.|
T Consensus 325 ~l~p~~kIIa~v~~--~~----~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 325 EMSSDVKTVAAVND--SK----NLEKIKRVHPDMIFSP 356 (393)
T ss_pred HhCCCCcEEEEECC--HH----HHHHHHhcCCCEEECH
Confidence 3444 456664443 22 2344566787766444
|
|
| >PRK08415 enoyl-(acyl carrier protein) reductase; Provisional | Back alignment and domain information |
|---|
Probab=82.13 E-value=5.5 Score=34.14 Aligned_cols=72 Identities=11% Similarity=-0.033 Sum_probs=42.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch---HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD---ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~---~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++|+.|++.|++|.+.+|+.+ +.+++.+.. .....+-+=+.++.+++.++.. +.+...+=
T Consensus 19 IG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~-----------~~~~~~~~Dv~d~~~v~~~~~~---i~~~~g~i 84 (274)
T PRK08415 19 IAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQEL-----------GSDYVYELDVSKPEHFKSLAES---LKKDLGKI 84 (274)
T ss_pred HHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhc-----------CCceEEEecCCCHHHHHHHHHH---HHHHcCCC
Confidence 799999999999999999998853 333332210 0011233335666667666653 33322233
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
+++|+....
T Consensus 85 DilVnnAG~ 93 (274)
T PRK08415 85 DFIVHSVAF 93 (274)
T ss_pred CEEEECCcc
Confidence 566766544
|
|
| >PRK12743 oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.10 E-value=4.6 Score=33.92 Aligned_cols=76 Identities=16% Similarity=0.174 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCCcEEEEc-CCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYD-KNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~d-r~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|+++|++|.+.. ++.+..+.+.+. +...-.+.+++-.-+.++.+++.++.. +.....+=+.
T Consensus 14 iG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~~~id~ 83 (256)
T PRK12743 14 IGKACALLLAQQGFDIGITWHSDEEGAKETAEE-------VRSHGVRAEIRQLDLSDLPEGAQALDK---LIQRLGRIDV 83 (256)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHH-------HHhcCCceEEEEccCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999998764 555554444321 000001233444556777777776653 3333333356
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|.+...
T Consensus 84 li~~ag~ 90 (256)
T PRK12743 84 LVNNAGA 90 (256)
T ss_pred EEECCCC
Confidence 6666543
|
|
| >PRK06181 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.96 E-value=4.6 Score=33.98 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=25.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
+|..+++.|++.|++|++.+|++++.+.+
T Consensus 13 iG~~la~~l~~~g~~Vi~~~r~~~~~~~~ 41 (263)
T PRK06181 13 IGRALAVRLARAGAQLVLAARNETRLASL 41 (263)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 68999999999999999999998766554
|
|
| >PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed | Back alignment and domain information |
|---|
Probab=81.95 E-value=4 Score=33.89 Aligned_cols=29 Identities=28% Similarity=0.249 Sum_probs=24.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
+|..+++.|+++|++|++.+|++++...+
T Consensus 18 iG~~l~~~l~~~g~~V~~~~r~~~~~~~~ 46 (251)
T PRK12826 18 IGRAIAVRLAADGAEVIVVDICGDDAAAT 46 (251)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 78999999999999999999997665443
|
|
| >TIGR01087 murD UDP-N-acetylmuramoylalanine--D-glutamate ligase | Back alignment and domain information |
|---|
Probab=81.81 E-value=5.8 Score=36.45 Aligned_cols=114 Identities=16% Similarity=0.110 Sum_probs=60.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HH----HHH-HcCCcccC-CHHHHhhcCcEEEEecCCh---hHHHHHhcC----
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQ----TLA-KEGANMAL-SLSTLASGAEFIISMLPAS---QDVLDAYDG---- 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~----~l~-~~g~~~~~-s~~e~~~~adivi~~v~~~---~~~~~v~~~---- 67 (286)
.|.++|+.|.+.|++|+++|.++.. .. .+. ..|+.+.. ...+.+.++|+||.+-.-+ ..+......
T Consensus 10 ~G~a~a~~l~~~G~~V~~sD~~~~~~~~~~~~~~~~~~gi~~~~g~~~~~~~~~d~vv~sp~i~~~~p~~~~a~~~~i~i 89 (433)
T TIGR01087 10 TGRAVARFLHKKGAEVTVTDLKPNEELEPSMGQLRLNEGSVLHTGLHLEDLNNADLVVKSPGIPPDHPLVQAAAKRGIPV 89 (433)
T ss_pred hHHHHHHHHHHCCCEEEEEeCCCCccchhHHHHHhhccCcEEEecCchHHhccCCEEEECCCCCCCCHHHHHHHHCCCcE
Confidence 4778999999999999999976432 21 122 24765532 1245567899888765322 222221111
Q ss_pred --CccccccCCCCCEEEEcCCCC-chHHHHHHHHHHhcCCceEeccCCCCH
Q psy764 68 --SDGILKHAKPGVIVIDSSTVD-PQVPQTLSNLAREKQITFLDAPVSGGT 115 (286)
Q Consensus 68 --~~~l~~~l~~g~ivid~st~~-p~~~~~~~~~~~~~g~~~~~~pv~g~~ 115 (286)
.-.++..+.+.++|--+.|-. ..++.-+...+...|..+.-+...|.|
T Consensus 90 ~~~~e~~~~~~~~~~I~VTGT~GKTTTt~li~~iL~~~g~~~~~~gnig~~ 140 (433)
T TIGR01087 90 VGDIELFLRLVPLPVVAITGTNGKTTTTSLLYHLLKAAGLKAFLGGNIGTP 140 (433)
T ss_pred EEHHHHHHhhcCCCEEEEECCCCHHHHHHHHHHHHHhcCCCeEEECccCHH
Confidence 001111122344555454443 444444566676666555443334443
|
|
| >PRK06114 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.66 E-value=5.2 Score=33.59 Aligned_cols=76 Identities=17% Similarity=0.157 Sum_probs=43.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.|++.|++|.+.+|+.++ .+.+.+. +...-.+...+-.-+.++.+++.++.. +.+...+=++
T Consensus 20 IG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-------l~~~~~~~~~~~~D~~~~~~i~~~~~~---~~~~~g~id~ 89 (254)
T PRK06114 20 IGQRIAIGLAQAGADVALFDLRTDDGLAETAEH-------IEAAGRRAIQIAADVTSKADLRAAVAR---TEAELGALTL 89 (254)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHH-------HHhcCCceEEEEcCCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 7999999999999999999987542 3333211 000001223333445666667766653 3333333356
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 90 li~~ag~ 96 (254)
T PRK06114 90 AVNAAGI 96 (254)
T ss_pred EEECCCC
Confidence 7776543
|
|
| >PRK05650 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.56 E-value=5.2 Score=33.91 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=26.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|++.|++|.+.+|+.++.+.+.
T Consensus 12 IG~~la~~l~~~g~~V~~~~r~~~~~~~~~ 41 (270)
T PRK05650 12 LGRAIALRWAREGWRLALADVNEEGGEETL 41 (270)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 789999999999999999999987766543
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=81.53 E-value=4.2 Score=32.96 Aligned_cols=25 Identities=24% Similarity=0.499 Sum_probs=20.0
Q ss_pred HHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 6 KLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 6 lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
++..|++.|++|+++|.+++.++.+
T Consensus 44 ~a~~la~~g~~V~~iD~s~~~l~~a 68 (195)
T TIGR00477 44 NSLYLSLAGYDVRAWDHNPASIASV 68 (195)
T ss_pred HHHHHHHCCCeEEEEECCHHHHHHH
Confidence 4566778899999999998876654
|
Part of a tellurite-reducing operon tehA and tehB |
| >TIGR00715 precor6x_red precorrin-6x reductase | Back alignment and domain information |
|---|
Probab=81.47 E-value=7.5 Score=33.14 Aligned_cols=159 Identities=14% Similarity=0.112 Sum_probs=86.7
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEE
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
|..++..|.+.||+|+++-++....+.+.+.| ..-++.-..+...+.+.+.+ ..-++||
T Consensus 12 gr~la~~L~~~g~~v~~s~~t~~~~~~~~~~g-------------~~~v~~g~l~~~~l~~~l~~--------~~i~~VI 70 (256)
T TIGR00715 12 SRAIAKGLIAQGIEILVTVTTSEGKHLYPIHQ-------------ALTVHTGALDPQELREFLKR--------HSIDILV 70 (256)
T ss_pred HHHHHHHHHhCCCeEEEEEccCCccccccccC-------------CceEEECCCCHHHHHHHHHh--------cCCCEEE
Confidence 66788888899999999988876544333221 22344455555566665542 1236999
Q ss_pred EcCCCCchHH-HHHHHHHHhcCCceEec--cCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHH---hcCCeEec-CCcc
Q psy764 83 DSSTVDPQVP-QTLSNLAREKQITFLDA--PVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKC---MGRNIVHC-GDSG 155 (286)
Q Consensus 83 d~st~~p~~~-~~~~~~~~~~g~~~~~~--pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~---~g~~v~~~-g~~g 155 (286)
|.+....... +...+.+.+.|+.|+.- |.. ..+....++..- +.+..++.. .+.+++.. |.-.
T Consensus 71 DAtHPfA~~is~~a~~a~~~~~ipylR~eR~~~------~~~~~~~~v~~~----~ea~~~~~~~~~~~~~i~lttG~k~ 140 (256)
T TIGR00715 71 DATHPFAAQITTNATAVCKELGIPYVRFERPPL------ALGKNIIEVPDI----EEATRVAYQPYLRGKRVFLTAGASW 140 (256)
T ss_pred EcCCHHHHHHHHHHHHHHHHhCCcEEEEECCCC------CCCCCeEEeCCH----HHHHHHhhhccccCCcEEEecCcch
Confidence 9987665433 44555667778888853 321 122224444432 333345555 55566654 3222
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL 192 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~ 192 (286)
-....+......++.-+.-..|.+..|.++|++++.+
T Consensus 141 l~~f~~~~~~~~~~~RvLP~~~~l~~~~~~G~~~~~i 177 (256)
T TIGR00715 141 LSHFSLSQDEAVVFVRVLPYPQALAQALKLGFPSDRI 177 (256)
T ss_pred HHHHhhccCCceEEEEECCCchhhHHHHHcCCChhcE
Confidence 2222221111111111223346777888999987765
|
This enzyme was found to be a monomer by gel filtration. |
| >PRK07831 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.30 E-value=4 Score=34.41 Aligned_cols=29 Identities=14% Similarity=0.045 Sum_probs=25.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||..+++.|+++|++|++.+|++++.+..
T Consensus 30 IG~~ia~~l~~~G~~V~~~~~~~~~~~~~ 58 (262)
T PRK07831 30 IGSATARRALEEGARVVISDIHERRLGET 58 (262)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 78999999999999999999998766544
|
|
| >PRK06483 dihydromonapterin reductase; Provisional | Back alignment and domain information |
|---|
Probab=81.29 E-value=5.8 Score=32.80 Aligned_cols=25 Identities=28% Similarity=0.248 Sum_probs=22.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA 26 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~ 26 (286)
||..+++.|+++|++|.+.+|+++.
T Consensus 14 IG~~ia~~l~~~G~~V~~~~r~~~~ 38 (236)
T PRK06483 14 IGLALAWHLLAQGQPVIVSYRTHYP 38 (236)
T ss_pred HHHHHHHHHHHCCCeEEEEeCCchh
Confidence 7999999999999999999998754
|
|
| >cd00704 MDH Malate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.23 E-value=2.1 Score=37.84 Aligned_cols=56 Identities=13% Similarity=0.045 Sum_probs=38.4
Q ss_pred ccHHHHHHHHhCCC-------cEEEEcCCc--hHHHHHH----Hc------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH-------DVIVYDKNT--DASQTLA----KE------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-------~V~~~dr~~--~~~~~l~----~~------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+.++..|+..|. ++.++|+++ ++.+-.+ .. +..+..+..+.+++||+||++-..
T Consensus 12 VG~~~a~~L~~~~~~~~~~~~~l~L~Di~~~~~~~~g~~~Dl~d~~~~~~~~~~i~~~~~~~~~~aDiVVitAG~ 86 (323)
T cd00704 12 IGYNLLFLIASGELFGDDQPVILHLLDIPPAMKALEGVVMELQDCAFPLLKGVVITTDPEEAFKDVDVAILVGAF 86 (323)
T ss_pred HHHHHHHHHHhCCccCCCCceEEEEEecCCccCccceeeeehhhhcccccCCcEEecChHHHhCCCCEEEEeCCC
Confidence 78999999987663 499999987 5432111 11 123335677888999999988654
|
Malate dehydrogenase (MDH) is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. MDHs belong to the NAD-dependent, lactate dehydrogenase (LDH)-like, 2-hydroxycarboxylate dehydrogenase family, which also includes the GH4 family of glycoside hydrolases. They are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others. |
| >PRK09291 short chain dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=81.21 E-value=2.8 Score=35.09 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=26.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
+|..+++.|+++|++|++.+|++++.+.+.
T Consensus 14 iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~ 43 (257)
T PRK09291 14 FGREVALRLARKGHNVIAGVQIAPQVTALR 43 (257)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999987665554
|
|
| >PLN02214 cinnamoyl-CoA reductase | Back alignment and domain information |
|---|
Probab=81.07 E-value=2.2 Score=37.90 Aligned_cols=55 Identities=16% Similarity=0.109 Sum_probs=36.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH-----HHHHc--CC-------cccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ-----TLAKE--GA-------NMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~-----~l~~~--g~-------~~~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|+++||+|.+..|+.++.. .+... .+ .-..+..++++++|+||-+-.
T Consensus 22 IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~d~Vih~A~ 90 (342)
T PLN02214 22 IASWIVKILLERGYTVKGTVRNPDDPKNTHLRELEGGKERLILCKADLQDYEALKAAIDGCDGVFHTAS 90 (342)
T ss_pred HHHHHHHHHHHCcCEEEEEeCCchhhhHHHHHHhhCCCCcEEEEecCcCChHHHHHHHhcCCEEEEecC
Confidence 799999999999999999998866421 11110 11 111234566778898887764
|
|
| >PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E | Back alignment and domain information |
|---|
Probab=81.03 E-value=0.89 Score=33.15 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHH
Q psy764 165 NMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAED 243 (286)
Q Consensus 165 n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~ 243 (286)
+.+++.++.++.++ +.+.|++++...+++..+. |..........-|. .+.+..-+|+.+... .++
T Consensus 17 pA~~~~~~eal~~a---~v~~Gl~~~~A~~lv~~t~~G~a~ll~~~~~~~~----~l~~~v~tPgG~T~~-------gl~ 82 (107)
T PF14748_consen 17 PAYFFLFIEALADA---AVAQGLPREEARKLVAQTFIGAAKLLEESGRSPA----ELRDEVTTPGGTTIA-------GLE 82 (107)
T ss_dssp HHHHHHHHHHHHHH---HHHTT--HHHHHHHHHHHHHHHHHHHHHCSS-HH----HHHHHHS-TTSHHHH-------HHH
T ss_pred HHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHccCCCHH----HHhhhccCCCCcHHH-------HHH
Confidence 33466777777777 8899999999999988753 21111111000000 111222346655555 556
Q ss_pred HHhhcCCCchHHHHHHHHHHHHHH
Q psy764 244 LANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 244 ~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
..++.|+.-.+.+++...++++.+
T Consensus 83 ~L~~~~~~~~~~~a~~aa~~R~~e 106 (107)
T PF14748_consen 83 VLEKGGLRAAIMEALEAAVERAKE 106 (107)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHc
Confidence 667777777777777777776654
|
... |
| >PF08546 ApbA_C: Ketopantoate reductase PanE/ApbA C terminal; InterPro: IPR013752 This is the C-terminal domain of 2-dehydropantoate 2-reductases also known as ketopantoate reductases, 1 | Back alignment and domain information |
|---|
Probab=81.03 E-value=6 Score=29.34 Aligned_cols=85 Identities=12% Similarity=0.107 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHcCC--CHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHH
Q psy764 168 LGVTMMGVAEAMNLGVKLGM--NAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLA 245 (286)
Q Consensus 168 ~~~~~~~~~Ea~~l~~~~Gl--~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a 245 (286)
.......+.|+..++++.|+ +++.+.+.+........ + ..+.+..+. ..+. .+ +.--=...+.+.+
T Consensus 37 ~~~~~~l~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~--~---~~~SM~~D~-~~gr-----~t-Eid~i~G~vv~~a 104 (125)
T PF08546_consen 37 RELIRALMREVIAVARALGIPLDPDDLEEAIERLIRSTP--D---NRSSMLQDI-EAGR-----PT-EIDYINGYVVRLA 104 (125)
T ss_dssp HHHHHHHHHHHHHHHHHTTSS--HHHHHHHHHHHHHCTT--T---T--HHHHHH-HTTB--------SHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHhcC--C---ccccHHHHH-HHcc-----cc-cHHHHHHHHHHHH
Confidence 44556788999999999995 44444444432110000 0 001111100 0111 01 1111245689999
Q ss_pred hhcCCCchHHHHHHHHHHH
Q psy764 246 NRCTAQTDLSKLATSIYKR 264 (286)
Q Consensus 246 ~~~g~~~p~~~~~~~~~~~ 264 (286)
+++|+++|..+.++++.+.
T Consensus 105 ~~~gv~~P~~~~i~~lvk~ 123 (125)
T PF08546_consen 105 KKHGVPTPVNETIYALVKA 123 (125)
T ss_dssp HHTT---HHHHHHHHHHHH
T ss_pred HHHCCCCcHHHHHHHHHHH
Confidence 9999999999999988764
|
1.1.169 from EC. The reaction catalysed by this enzyme is: (R)-pantoate + NADP(+) = 2-dehydropantoate + NADPH. AbpA catalyses the NADPH reduction of ketopantoic acid to pantoic acid in the alternative pyrimidine biosynthetic (APB) pathway []. ApbA and PanE are allelic []. ApbA, the ketopantoate reductase enzyme is required for the synthesis of thiamine via the APB biosynthetic pathway []. ; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 1YJQ_A 1KS9_A 2OFP_A 1YON_A 2EW2_B 3EGO_B 3HN2_D 3GHY_B 3G17_E 3HWR_B .... |
| >PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional | Back alignment and domain information |
|---|
Probab=80.88 E-value=10 Score=35.44 Aligned_cols=55 Identities=22% Similarity=0.185 Sum_probs=37.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-----HHHHHHHcCCcccCC-HHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-----ASQTLAKEGANMALS-LSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-----~~~~l~~~g~~~~~s-~~e~~~~adivi~~v~ 56 (286)
+|..+|..|.+.|++|+++|+++. ..+.+.+.|+.+... ..+....+|+||++..
T Consensus 27 ~G~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~l~~~gv~~~~~~~~~~~~~~D~Vv~s~G 87 (480)
T PRK01438 27 SGFAAADALLELGARVTVVDDGDDERHRALAAILEALGATVRLGPGPTLPEDTDLVVTSPG 87 (480)
T ss_pred HHHHHHHHHHHCCCEEEEEeCCchhhhHHHHHHHHHcCCEEEECCCccccCCCCEEEECCC
Confidence 577889999999999999996542 234455667765421 1123456899998863
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 286 | ||||
| 2i9p_A | 319 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 7e-75 | ||
| 2gf2_A | 296 | Crystal Structure Of Human Hydroxyisobutyrate Dehyd | 7e-75 | ||
| 3q3c_A | 299 | Crystal Structure Of A Serine Dehydrogenase From Ps | 1e-51 | ||
| 3obb_A | 300 | Crystal Structure Of A Possible 3-Hydroxyisobutyrat | 1e-51 | ||
| 3cky_A | 301 | Structural And Kinetic Properties Of A Beta-Hydroxy | 8e-38 | ||
| 1vpd_A | 299 | X-Ray Crystal Structure Of Tartronate Semialdehyde | 2e-31 | ||
| 1wp4_A | 289 | Structure Of Tt368 Protein From Thermus Thermophilu | 2e-29 | ||
| 2cvz_A | 289 | Structure Of Hydroxyisobutyrate Dehydrogenase From | 5e-29 | ||
| 3pef_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 4e-27 | ||
| 3pdu_A | 287 | Crystal Structure Of Gamma-Hydroxybutyrate Dehydrog | 2e-26 | ||
| 2uyy_A | 316 | Structure Of The Cytokine-Like Nuclear Factor N-Pac | 4e-21 | ||
| 3doj_A | 310 | Structure Of Glyoxylate Reductase 1 From Arabidopsi | 3e-20 | ||
| 1yb4_A | 295 | Crystal Structure Of The Tartronic Semialdehyde Red | 6e-20 | ||
| 4dll_A | 320 | Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Re | 5e-19 | ||
| 3qha_A | 296 | Crystal Structure Of A Putative Oxidoreductase From | 1e-14 | ||
| 3g0o_A | 303 | Crystal Structure Of 3-Hydroxyisobutyrate Dehydroge | 4e-13 | ||
| 4e21_A | 358 | The Crystal Structure Of 6-Phosphogluconate Dehydro | 2e-08 | ||
| 4gbj_A | 297 | Crystal Structure Of Nad-Binding 6-Phosphogluconate | 2e-07 | ||
| 2w90_A | 471 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 2e-05 | ||
| 2w8z_A | 470 | Geobacillus Stearothermophilus 6-Phosphogluconate D | 2e-05 |
| >pdb|2I9P|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Complexed With Nad+ Length = 319 | Back alignment and structure |
|
| >pdb|2GF2|A Chain A, Crystal Structure Of Human Hydroxyisobutyrate Dehydrogenase Length = 296 | Back alignment and structure |
|
| >pdb|3Q3C|A Chain A, Crystal Structure Of A Serine Dehydrogenase From Pseudomonas Aeruginosa Pao1 In Complex With Nad Length = 299 | Back alignment and structure |
|
| >pdb|3OBB|A Chain A, Crystal Structure Of A Possible 3-Hydroxyisobutyrate Dehydrogenase From Pseudomonas Aeruginosa Pao1 Length = 300 | Back alignment and structure |
|
| >pdb|3CKY|A Chain A, Structural And Kinetic Properties Of A Beta-Hydroxyacid Dehydrogenase Involved In Nicotinate Fermentation Length = 301 | Back alignment and structure |
|
| >pdb|1VPD|A Chain A, X-Ray Crystal Structure Of Tartronate Semialdehyde Reductase [salmonella Typhimurium Lt2] Length = 299 | Back alignment and structure |
|
| >pdb|1WP4|A Chain A, Structure Of Tt368 Protein From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|2CVZ|A Chain A, Structure Of Hydroxyisobutyrate Dehydrogenase From Thermus Thermophilus Hb8 Length = 289 | Back alignment and structure |
|
| >pdb|3PEF|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Metallireducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|3PDU|A Chain A, Crystal Structure Of Gamma-Hydroxybutyrate Dehydrogenase From Geobacter Sulfurreducens In Complex With Nadp+ Length = 287 | Back alignment and structure |
|
| >pdb|2UYY|A Chain A, Structure Of The Cytokine-Like Nuclear Factor N-Pac Length = 316 | Back alignment and structure |
|
| >pdb|3DOJ|A Chain A, Structure Of Glyoxylate Reductase 1 From Arabidopsis (Atglyr1) Length = 310 | Back alignment and structure |
|
| >pdb|1YB4|A Chain A, Crystal Structure Of The Tartronic Semialdehyde Reductase From Salmonella Typhimurium Lt2 Length = 295 | Back alignment and structure |
|
| >pdb|4DLL|A Chain A, Crystal Structure Of A 2-Hydroxy-3-Oxopropionate Reductase From Polaromonas Sp. Js666 Length = 320 | Back alignment and structure |
|
| >pdb|3QHA|A Chain A, Crystal Structure Of A Putative Oxidoreductase From Mycobacterium Avium 104 Length = 296 | Back alignment and structure |
|
| >pdb|3G0O|A Chain A, Crystal Structure Of 3-Hydroxyisobutyrate Dehydrogenase (Ygbj) From Salmonella Typhimurium Length = 303 | Back alignment and structure |
|
| >pdb|4E21|A Chain A, The Crystal Structure Of 6-Phosphogluconate Dehydrogenase From Geobacter Metallireducens Length = 358 | Back alignment and structure |
|
| >pdb|4GBJ|A Chain A, Crystal Structure Of Nad-Binding 6-Phosphogluconate Dehydrogenase From Dyadobacter Fermentans Length = 297 | Back alignment and structure |
|
| >pdb|2W90|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 471 | Back alignment and structure |
|
| >pdb|2W8Z|A Chain A, Geobacillus Stearothermophilus 6-Phosphogluconate Dehydrogenase With Bound 6-Phosphogluconate Length = 470 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 286 | |||
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 1e-134 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 1e-131 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 1e-119 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 1e-110 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 1e-106 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 1e-103 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 1e-102 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 1e-101 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 1e-101 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 1e-94 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 5e-94 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 5e-93 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 5e-84 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 8e-73 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 5e-52 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 7e-49 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 5e-41 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 1e-13 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 1e-13 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 5e-09 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 3e-08 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-06 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 5e-06 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 2e-05 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 4e-05 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 1e-04 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 2e-04 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 4e-04 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 6e-04 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 7e-04 |
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* Length = 296 | Back alignment and structure |
|---|
Score = 380 bits (977), Expect = e-134
Identities = 130/272 (47%), Positives = 184/272 (67%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ +I+YD DA + G + S + +A A+ II+MLP S + ++AY G++GILK
Sbjct: 23 GYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILK 82
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
K G ++IDSST+DP V + L+ + F+DAPVSGG AA+ LTFMVGG +
Sbjct: 83 KVKKGSLLIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDE 142
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
A+ +L CMG N+V+CG G GQ AK+CNNMLL ++M+G AEAMNLG++LG++ KLL+
Sbjct: 143 FAAAQELLGCMGSNVVYCGAVGTGQAAKICNNMLLAISMIGTAEAMNLGIRLGLDPKLLA 202
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
++N SSGRCWSS+ YNPVPGV+ VP++NNY GGF +L+AKD+ LA+D A +
Sbjct: 203 KILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGLAQDSATSTKSPIL 262
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L LA IY+ + KG KDFS +++FL+ +
Sbjct: 263 LGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 294
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} Length = 301 | Back alignment and structure |
|---|
Score = 341 bits (878), Expect = e-119
Identities = 87/273 (31%), Positives = 142/273 (52%), Gaps = 6/273 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V +D + +GA + +A+ ++ I + LP + V +G G+L
Sbjct: 27 GVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLS 86
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
K G +++D S+V P ++ +A EK I ++DAPVSGGTK A+ TLT MVG ++
Sbjct: 87 ACKAGTVIVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAV 146
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
EK +P+L +G++I H GD+G G K+ NN+LLG M +AEA+ LGVK G+ + +
Sbjct: 147 FEKIQPVLSVIGKDIYHVGDTGAGDAVKIVNNLLLGCNMASLAEALVLGVKCGLKPETMQ 206
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
++I SSGR ++ E S ++ GGF + L KD+ LA +
Sbjct: 207 EIIGKSSGRSYAMEAKME------KFIMSGDFAGGFAMDLQHKDLGLALEAGKEGNVPLP 260
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNKT 286
++ +AT I++ G +D S + + + T
Sbjct: 261 MTAMATQIFEGGRAMGLGREDMSAVIKVWEQMT 293
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} Length = 296 | Back alignment and structure |
|---|
Score = 320 bits (823), Expect = e-110
Identities = 70/262 (26%), Positives = 110/262 (41%), Gaps = 5/262 (1%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
V VYD +A LA+ GA +A S++ +A+ I++L + V + +
Sbjct: 38 PGGVTVYDIRIEAMTPLAEAGATLADSVADVAAADLIHITVLDDA-QVREVVGE---LAG 93
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
HAKPG ++ ST+ L+ + + I +DAPVSGG AA L MVG D+
Sbjct: 94 HAKPGTVIAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREV 153
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E+ KP K ++H G+ G G KL NML + EAM L G++ + L
Sbjct: 154 YERIKPAFKHWAAVVIHAGEPGAGTRMKLARNMLTFTSYAAACEAMKLAEAAGLDLQALG 213
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFK-ISLLAKDMKLAEDLANRCTAQT 252
V+ + + P + Y L KD+ LA L +
Sbjct: 214 RVVRHTDALTGGPGAIMVRDNMKDLEPDNFLYQPFLHTRGLGEKDLSLALALGEAVSVDL 273
Query: 253 DLSKLATSIYKRLMDKGCQDKD 274
L++LA + ++K+
Sbjct: 274 PLARLAYEGLAAGLGVPHKEKE 295
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 Length = 299 | Back alignment and structure |
|---|
Score = 309 bits (793), Expect = e-106
Identities = 84/270 (31%), Positives = 139/270 (51%), Gaps = 7/270 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ ++V D+N +A + GA A + +A + II+MLP S V + G +GI++
Sbjct: 28 GYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIE 87
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
AKPG ++ID S++ P + +S+ + K + LDAPVSGG A + TL+ MVGGDK+
Sbjct: 88 GAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAI 147
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
+K ++K M ++VH GD G G V KL N +++ + + ++EA+ L K G+N L+
Sbjct: 148 FDKYYDLMKAMAGSVVHTGDIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVY 207
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
I + P + N+ GF+I L KD+ A D ++ AQ
Sbjct: 208 QAIRGGLAGSTVLDAKAP-------MVMDRNFKPGFRIDLHIKDLANALDTSHGVGAQLP 260
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
L+ + + L G + D S + + +
Sbjct: 261 LTAAVMEMMQALRADGHGNDDHSALACYYE 290
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} Length = 287 | Back alignment and structure |
|---|
Score = 301 bits (773), Expect = e-103
Identities = 75/270 (27%), Positives = 122/270 (45%), Gaps = 7/270 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V +++++ + ++ LA GA A + + +ML + G G+L+
Sbjct: 24 GCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLE 83
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
G +D STVDP Q + K FL+APVSG K A++ TL + GD++
Sbjct: 84 GIGEGRGYVDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNL 143
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
++A P + MG+ I+H GD G G KL NM++G M E + LG K G+ +
Sbjct: 144 YDEAMPGFEKMGKKIIHLGDVGKGAEMKLVVNMVMGGMMACFCEGLALGEKAGLATDAIL 203
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
DVI + + + N+ F + + KD++LA L +R
Sbjct: 204 DVIGAGAMANPMFALKGG-------LIRDRNFAPAFPLKHMQKDLRLAVALGDRVGQPLV 256
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
S A ++K G D+DFS I++ +
Sbjct: 257 ASAAANELFKGARAAGFGDEDFSAIFKTYE 286
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* Length = 289 | Back alignment and structure |
|---|
Score = 300 bits (770), Expect = e-102
Identities = 73/270 (27%), Positives = 128/270 (47%), Gaps = 12/270 (4%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
++ A + + G+ + A I + LP +++V + + +
Sbjct: 24 FPTLVWNRTFEKALRHQEEFGS--EAVPLERVAEARVIFTCLPTTREVYEVAEA---LYP 78
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
+ + G +D+++ +P+ + L+ REK +T+LDAPVSGGT A+ TLT M+GG + +
Sbjct: 79 YLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEA 138
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
+E+ +P L + +VH G G G K NN LL V + E + VK G++A+
Sbjct: 139 VERVRPFL-AYAKKVVHVGPVGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKAL 197
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+VIN SSGR ++E P + + F + LL KD+ +A + + A +
Sbjct: 198 EVINASSGRSNATENLIP------QRVLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSP 251
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
L +LA +Y+ + D D L+
Sbjct: 252 LLRLAREVYEMAKRELGPDADHVEALRLLE 281
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} Length = 287 | Back alignment and structure |
|---|
Score = 296 bits (760), Expect = e-101
Identities = 73/270 (27%), Positives = 123/270 (45%), Gaps = 7/270 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G DV V+++N L GA A S + + + + I+ML + G++G+L+
Sbjct: 24 GFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLE 83
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
G ID STVD + + + FL+APVSG K A++ TL + GD+S
Sbjct: 84 GIGGGRGYIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSL 143
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
A P +G+ +H G+ G G KL NM++G M + E M LG G++ L
Sbjct: 144 FTDAGPAFAALGKKCLHLGEVGQGARMKLVVNMIMGQMMTALGEGMALGRNCGLDGGQLL 203
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+V++ + + + S + F + + KD++LA +L +R
Sbjct: 204 EVLDAGAMANPMFKGKGQ-------MLLSGEFPTSFPLKHMQKDLRLAVELGDRLGQPLH 256
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
+ A +KR G D+DF+ ++ L+
Sbjct: 257 GAATANESFKRARAAGHADEDFAAVFRVLE 286
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} Length = 303 | Back alignment and structure |
|---|
Score = 296 bits (761), Expect = e-101
Identities = 70/274 (25%), Positives = 118/274 (43%), Gaps = 9/274 (3%)
Query: 14 GHDVIVYDKNTDASQTLAKEGA-NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
G D N A L EGA A S A + ++ ++ + V G DG+
Sbjct: 30 GLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVA 89
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
KPG V+ SST+ Q ++ + LDAPVSGG A + +T M G ++
Sbjct: 90 HLMKPGSAVMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEA 149
Query: 133 SLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKL 191
+ + KP+L + N+ D+ G G K+ + +L GV + AEAM L + G+ +
Sbjct: 150 AFTRLKPVLDAVASNVYRISDTPGAGSTVKIIHQLLAGVHIAAAAEAMALAARAGIPLDV 209
Query: 192 LSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQ 251
+ DV+ ++G W E N + V+ +Y + + KD+ L D A
Sbjct: 210 MYDVVTHAAGNSWMFE--NRMQHVV-----DGDYTPRSAVDIFVKDLGLVADTAKALRFP 262
Query: 252 TDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
L+ A +++ + G +D S + + +
Sbjct: 263 LPLASTALNMFTSASNAGYGKEDDSAVIKIFSGE 296
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} Length = 316 | Back alignment and structure |
|---|
Score = 281 bits (720), Expect = 1e-94
Identities = 65/275 (23%), Positives = 113/275 (41%), Gaps = 7/275 (2%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L GH V V+++ + +EGA + + + + S + + + + D G
Sbjct: 49 LLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPS 108
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
G+L+ +PG +D STVD L+ + + FL+APVSG + + + L + G
Sbjct: 109 GVLQGIRPGKCYVDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAG 168
Query: 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNA 189
D+ E + MG+ G+ GN L NM+ G M +AE + L G +
Sbjct: 169 DRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMMLIVNMVQGSFMATIAEGLTLAQVTGQSQ 228
Query: 190 KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCT 249
+ L D++N + N+ F + + KD++LA L +
Sbjct: 229 QTLLDILNQGQLASIFLDQKCQ-------NILQGNFKPDFYLKYIQKDLRLAIALGDAVN 281
Query: 250 AQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284
T ++ A +YKR D D S +Y +
Sbjct: 282 HPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYIH 316
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} Length = 310 | Back alignment and structure |
|---|
Score = 279 bits (715), Expect = 5e-94
Identities = 69/273 (25%), Positives = 119/273 (43%), Gaps = 7/273 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V V+++ L + GA++ S + + ++ I+ML L G+L+
Sbjct: 44 GFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLE 103
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
G ID STVD + ++ K F++ PVSG K A++ L + GDK+
Sbjct: 104 QICEGKGYIDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKAL 163
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E++ P +G+ + G GNG KL NM++G M +E + L K G+++ L
Sbjct: 164 FEESIPAFDVLGKRSFYLGQVGNGAKMKLIVNMIMGSMMNAFSEGLVLADKSGLSSDTLL 223
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
D+++ + + P ++Y F + KDM+LA L +
Sbjct: 224 DILDLGAMTNPMFKGKGP-------SMNKSSYPPAFPLKHQQKDMRLALALGDENAVSMP 276
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNKT 286
++ A +K+ G D DFS + E +K
Sbjct: 277 VAAAANEAFKKARSLGLGDLDFSAVIEAVKFSR 309
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} Length = 295 | Back alignment and structure |
|---|
Score = 275 bits (707), Expect = 5e-93
Identities = 68/270 (25%), Positives = 116/270 (42%), Gaps = 8/270 (2%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
GH + V + L GA + + A+ I M+P + V D G G K
Sbjct: 26 GHQLHVTTI-GPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAK 84
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
+ G ++D S++ P + + E +LDAPVSGG A+E TL+ MVGG++
Sbjct: 85 TSLQGKTIVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKV 144
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
++ KP+ +G+NI G +G+GQ K+ N +++ + + V+EA+ K G + +
Sbjct: 145 FDRVKPLFDILGKNITLVGGNGDGQTCKVANQIIVALNIEAVSEALVFASKAGADPVRVR 204
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+ EV+ + + GFKI+L KD+ LA A
Sbjct: 205 QALMGGFASSRILEVHGE-------RMINRTFEPGFKIALHQKDLNLALQSAKALALNLP 257
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
+ ++ G D S + + L+
Sbjct: 258 NTATCQELFNTCAANGGSQLDHSAMVQALE 287
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} Length = 320 | Back alignment and structure |
|---|
Score = 254 bits (650), Expect = 5e-84
Identities = 71/272 (26%), Positives = 125/272 (45%), Gaps = 9/272 (3%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ + V+++ + +LA GA + A A+ ++SML V D G+
Sbjct: 54 GYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFA-QGVAA 112
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
KPG + +D +++ P+ + + I LD PVSGGT A++ TL M GG +
Sbjct: 113 AMKPGSLFLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPAD 172
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E++ P+LK GR H G G+GQ+ KL N M++G+T+ VAEA+ K G + +
Sbjct: 173 FERSLPLLKVFGR-ATHVGPHGSGQLTKLANQMIVGITIGAVAEALLFATKGGADMAKVK 231
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTD 253
+ I +++ ++ ++S+ KDM+ A A
Sbjct: 232 EAITGGFADSRVLQLHGQ-------RMVERDFAPRARLSIQLKDMRNALATAQEIGFDAP 284
Query: 254 LSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285
++ L +Y ++ G D D S ++ L ++
Sbjct: 285 ITGLFEQLYAEGVEHGLTDLDQSGLFVELASR 316
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} Length = 306 | Back alignment and structure |
|---|
Score = 224 bits (574), Expect = 8e-73
Identities = 34/271 (12%), Positives = 90/271 (33%), Gaps = 9/271 (3%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V +++++ + L GA++ S+ S + I +L + + G G+
Sbjct: 32 GKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVL-GMPGVA- 89
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
A ++D +T L L + ++ + + + GD+ +
Sbjct: 90 RALAHRTIVDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREA 149
Query: 134 LEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193
E+ + +L+ + + V + M+ EA+ G + G+ +
Sbjct: 150 FEQHRALLEGLAGHTVFLPW-DEALAFATVLHAHAFAAMVTFFEAVGAGDRFGLPVSKTA 208
Query: 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNY-NGGFKISLLAKDMKLAEDLANRCTAQT 252
++ +S + + V + + ++ ++ + A + T
Sbjct: 209 RLLLETSRFFVADALEEAVRRLE-----TQDFKGDQARLDVHADAFAHIAQSLHAQGVWT 263
Query: 253 DLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283
+ + +R G D+D + +
Sbjct: 264 PVFDAVCQVVQRAAAMGYGDQDIAATTKSFA 294
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} Length = 312 | Back alignment and structure |
|---|
Score = 171 bits (436), Expect = 5e-52
Identities = 39/274 (14%), Positives = 87/274 (31%), Gaps = 25/274 (9%)
Query: 13 QGH-DVIVYDKNT-DASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
G D+ YD + ++ + A+E G + S++ +A + I S++ A + A
Sbjct: 46 AGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALEVA----Q 101
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQI--TFLDAPVSGGTKAAQEATLTFMV 127
H G + D ++ P V + + ++ + + V K +
Sbjct: 102 QAGPHLCEGALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPHGHRVPLVVD 161
Query: 128 GGDKSSLEKAKPILKCMGRNI-VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLG 186
G + + G I V G+ G + K+C + +L EA+ K+G
Sbjct: 162 GDGA---RRFQAAFTLYGCRIEVLDGEVGGAALLKMCRSAVLKGLEALFLEALAAAEKMG 218
Query: 187 MNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLAN 246
+ ++L+ + + V L + + A ++
Sbjct: 219 LADRVLASLDASFPEHHLRDLALYLVERNLEH---------ADR---RAHELGEVAATLC 266
Query: 247 RCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYE 280
+ +++ R+ K
Sbjct: 267 SVGVEPLVAEAGYRRLTRVAQVRAALKQRPGDVR 300
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} Length = 317 | Back alignment and structure |
|---|
Score = 163 bits (415), Expect = 7e-49
Identities = 34/246 (13%), Positives = 78/246 (31%), Gaps = 17/246 (6%)
Query: 14 GHDVIVYDKNT------DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67
+ YD A + A E L + A+ ++S++ +
Sbjct: 48 AARLAAYDLRFNDPAASGALRARAAELGVEPLDDVAGIACADVVLSLVVGAATK----AV 103
Query: 68 SDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMV 127
+ H + ID ++V P + + +F++ V E +
Sbjct: 104 AASAAPHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMARVPPYAEKVPILVA 163
Query: 128 GGDKSSLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLG 186
G + L +G N+ G++ G K+ ++++ + EA++ + G
Sbjct: 164 GRRA---VEVAERLNALGMNLEAVGETPGQASSLKMIRSVMIKGVEALLIEALSSAERAG 220
Query: 187 MNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLAN 246
+ ++L V T G W + + + + + L ++
Sbjct: 221 VTERILDSVQETFPGLDWRDVADYYLSRTFE--HGARRVTEMTEAAETIESFGLNAPMS- 277
Query: 247 RCTAQT 252
R +T
Sbjct: 278 RAACET 283
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 Length = 264 | Back alignment and structure |
|---|
Score = 141 bits (357), Expect = 5e-41
Identities = 30/205 (14%), Positives = 64/205 (31%), Gaps = 14/205 (6%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72
+G +V+ + S + + +IS + + A
Sbjct: 22 RGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGRH-- 79
Query: 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKS 132
I +D + + P+ + S+L + F+DA + G + G D
Sbjct: 80 ----VRGIYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIRIIASGRDAE 133
Query: 133 SLEKAKPILKCMGRNIVHCGDS-GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKL 191
K L G NI G G+ K+ + + E + +LG+ +
Sbjct: 134 EFMK----LNRYGLNIEVRGREPGDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDV 189
Query: 192 LSDVINTSSGRCWSSEVYNPVPGVL 216
L +++ + G + + +
Sbjct: 190 L-EMLEYTEGNDFRESAISRLKSSC 213
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} Length = 358 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-13
Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 48/201 (23%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAE---FIISMLPAS--QDVLDAYDGS 68
GH+ +VYD N +A Q L +EG A S+ + + M+PA+ +L
Sbjct: 45 GHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAAVVDSMLQR---- 100
Query: 69 DGILKHAKPGVIVID---SSTVDPQVPQTL--SNLAREKQITFLDAPVSGGTKAAQEATL 123
+ IVID S D + ++ R + IT++D SGG +
Sbjct: 101 --MTPLLAANDIVIDGGNSHYQD-----DIRRADQMRAQGITYVDVGTSGGIFGLERGY- 152
Query: 124 TFMVGGDKSSLEKAKPILK-----------CMGRNI---------VHCGDSGNGQVAKLC 163
M+GG+K ++E+ P+ + GR +HCG SG G K+
Sbjct: 153 CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGREKREGTAELGYLHCGPSGAGHFVKMV 212
Query: 164 NNMLLGV---TMMGVAEAMNL 181
+N G+ M AE +N+
Sbjct: 213 HN---GIEYGLMAAYAEGLNI 230
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} Length = 286 | Back alignment and structure |
|---|
Score = 68.6 bits (167), Expect = 1e-13
Identities = 29/216 (13%), Positives = 56/216 (25%), Gaps = 33/216 (15%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
H + + + L G A+ ++ LP ++ I+
Sbjct: 35 AHHLAAIEIAPEGRDRLQGMGIP-LTDGDGWIDEADVVVLALP----DNIIEKVAEDIVP 89
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPV----------------SGGTKA 117
+PG IV+ P R F+ P G A
Sbjct: 90 RVRPGTIVLILDAAAPYAGVMP---ERADITYFIGHPCHPPLFNDETDPAARTDYHGGIA 146
Query: 118 AQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNM---LLGVTMMG 174
Q M G + I + M + Q+A L + + +
Sbjct: 147 KQAIVCALM-QGPEEHYAIGADICETMWSPVTRTHRVTTEQLAILEPGLSEMVAMPFVET 205
Query: 175 VAEAM-NLGVKLGMNAKLLSDV----INTSSGRCWS 205
+ A+ + G++ + D +N +
Sbjct: 206 MVHAVDECADRYGIDRQAALDFMIGHLNVEIAMWFG 241
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 Length = 478 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 5e-09
Identities = 39/200 (19%), Positives = 77/200 (38%), Gaps = 22/200 (11%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLA--SGAEF---------IISMLPASQDVL 62
G V V+++ S+ K A+ + + A + F + ++ A
Sbjct: 24 GFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAAT- 82
Query: 63 DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEAT 122
D+ + + K + G I++D+ + + + FL +SGG + A++
Sbjct: 83 DST--IEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP 140
Query: 123 LTFMVGGDKSSLEKAKPILKCM------GRNIV-HCGDSGNGQVAKLCNNMLLGVTMMGV 175
F GG S E+ +PI++ GR V G G G K+ +N +
Sbjct: 141 -AFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSGGAGSCVKMYHNSGEYAILQIW 199
Query: 176 AEAMNLGVKLGMNAKLLSDV 195
E ++ +G+N ++ V
Sbjct: 200 GEVFDILRAMGLNNDEVAAV 219
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* Length = 215 | Back alignment and structure |
|---|
Score = 51.9 bits (124), Expect = 3e-08
Identities = 28/155 (18%), Positives = 39/155 (25%), Gaps = 18/155 (11%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G V+V +N + L A S E I V + S L
Sbjct: 51 GFKVVVGSRNPKRTARLFPSAAQ-VTFQEEAVSSPEVIFVA------VFREHYSSLCSLS 103
Query: 74 HAKPGVIVIDSSTVDPQ-VPQTLSNLAREKQITFLDAPVSGGTKAAQEATL--------- 123
G I++D S Q Q + A F V TL
Sbjct: 104 DQLAGKILVDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNR 163
Query: 124 -TFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNG 157
+ G + + MG V G +
Sbjct: 164 QVPICGDQPEAKRAVSEMALAMGFMPVDMGSLASA 198
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 47.2 bits (111), Expect = 4e-06
Identities = 51/348 (14%), Positives = 102/348 (29%), Gaps = 88/348 (25%)
Query: 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ----- 59
L +F F + D L+KE + + SG + L + Q
Sbjct: 22 LSVFEDAFV-DNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQ 80
Query: 60 ----DVLDA-YDG-SDGILKHAK-PGVIVID-SSTVDP--QVPQTLS--NLAREKQITFL 107
+VL Y I + P ++ D Q + N++R + L
Sbjct: 81 KFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL 140
Query: 108 DAPVSGGTKAAQEA------TLTFMVGGDKSSLE----KAKPILKCMGRNI--VHCG--D 153
+A E + ++G K+ + + + M I ++ +
Sbjct: 141 -------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 154 SGNGQVAKLCNNMLLGVTMMGVAEAMN------------------LGVKLGMNAKL-LSD 194
S + L +L + + + + L K N L L +
Sbjct: 194 SPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 195 V-----INTSSGRC------WSSEVYNPVPGVLSNVPASNNYNGGF----KISLLAK--D 237
V N + C +V + + + + ++++ SLL K D
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 238 MKLAEDLANR-CTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284
+ +DL T + SI + +D ++ K+
Sbjct: 313 CR-PQDLPREVLT----TNPRRLSIIAESI------RDGLATWDNWKH 349
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.8 bits (110), Expect = 5e-06
Identities = 44/310 (14%), Positives = 92/310 (29%), Gaps = 58/310 (18%)
Query: 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD 60
++ L+ Q + + +D S + ++ L L + +L
Sbjct: 198 VLEMLQKLLYQIDPN----WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----- 248
Query: 61 VLDAYDGSDG-ILKHAKPG--VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKA 117
VL + + +++ T QV LS A I+ LD T
Sbjct: 249 VLL--NVQNAKAWNAFNLSCKILLT---TRFKQVTDFLSA-ATTTHIS-LDHHSMTLTPD 301
Query: 118 AQEATLTFMVGGDKSSL-EKAK---PILKCM-GRNIVHCGDSGNG----QVAKLCNNMLL 168
++ L + L + P + +I + + KL +
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 169 GVTMMGVAEAMNLGVKLGM---NAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNY 225
+ ++ AE + +L + +A + + ++ W + + V V+
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILL----SLIWFDVIKSDVMVVV--------- 408
Query: 226 NGGFKISLLAKDMK--------LAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDK---- 273
N K SL+ K K + +L + + L + Y + D
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPP 467
Query: 274 -DFSYIYEFL 282
Y Y +
Sbjct: 468 YLDQYFYSHI 477
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* Length = 480 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 2e-05
Identities = 31/139 (22%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMAL----SLSTLASGAE---FIISMLPASQDVLDAYD 66
G+ V +++++ + ++ + E L ++ E I+ M+ A DA
Sbjct: 38 GYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGT-DAA- 95
Query: 67 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT-- 124
D + + G I+ID Q + + F+ VSGG + A L
Sbjct: 96 -IDSLKPYLDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGA----LKGP 150
Query: 125 -FMVGGDKSSLEKAKPILK 142
M GG K + E PIL
Sbjct: 151 SIMPGGQKEAYELVAPILT 169
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* Length = 474 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 4e-05
Identities = 34/139 (24%), Positives = 53/139 (38%), Gaps = 17/139 (12%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMAL----SLSTLASGAE---FIISMLPASQDVLDAYD 66
G+ V +Y++ T ++ + KE + L +L E I+ M+ A DA
Sbjct: 28 GYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAAT-DAT- 85
Query: 67 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT-- 124
+L G I+ID + + I F+ VSGG K A L
Sbjct: 86 -IKSLLPLLDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGA----LLGP 140
Query: 125 -FMVGGDKSSLEKAKPILK 142
M GG K + + PI +
Sbjct: 141 SMMPGGQKEAYDLVAPIFE 159
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} Length = 201 | Back alignment and structure |
|---|
Score = 41.6 bits (97), Expect = 1e-04
Identities = 26/154 (16%), Positives = 46/154 (29%), Gaps = 19/154 (12%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
G+ V+ +N S L GA + + ++++ D L L
Sbjct: 42 GYSVVFGSRNPQVSSLLP-RGAEVLCYSEAASRSDVIVLAVHREHYDFLAE-------LA 93
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL---------- 123
+ G ++ID S SN Q+ A V L
Sbjct: 94 DSLKGRVLIDVSNNQKMNQYPESNAEYLAQL-VPGAHVVKAFNTISAWALQSGTLDASRQ 152
Query: 124 TFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNG 157
F+ G D + ++ I + +G + G
Sbjct: 153 VFVCGNDSKAKDRVMDIARTLGLTPLDQGSLVAA 186
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* Length = 482 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 2e-04
Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 12/137 (8%)
Query: 14 GHDVIVYDKNTD-ASQTLAKEGANMAL----SLSTLASGAE---FIISMLPASQDVLDAY 65
G V +++ LA E + SL + S + II ++ A Q V D +
Sbjct: 25 GFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV-DNF 83
Query: 66 DGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTF 125
+ ++ G I+ID + + ++K I F+ + VSGG A+ +
Sbjct: 84 --IEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SL 140
Query: 126 MVGGDKSSLEKAKPILK 142
M GG+K + K I +
Sbjct: 141 MPGGNKEAWPHIKAIFQ 157
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} Length = 497 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 4e-04
Identities = 30/137 (21%), Positives = 54/137 (39%), Gaps = 12/137 (8%)
Query: 14 GHDVIVYDKNTD-ASQTLAKEGANMAL----SLSTLASGAE---FIISMLPASQDVLDAY 65
G V Y++ LA E ++ S+ S + ++ ++ A V DA
Sbjct: 33 GFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPV-DAL 91
Query: 66 DGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTF 125
+ I+ + G I+ID ++K I F+ + VSGG + A+ +
Sbjct: 92 --INQIVPLLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP-SL 148
Query: 126 MVGGDKSSLEKAKPILK 142
M GG + + K I +
Sbjct: 149 MPGGSEEAWPHIKNIFQ 165
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} Length = 209 | Back alignment and structure |
|---|
Score = 39.1 bits (90), Expect = 7e-04
Identities = 19/141 (13%), Positives = 41/141 (29%), Gaps = 7/141 (4%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
GH+V Y A+ + ++ + D ++ +
Sbjct: 42 GHEVTYYGSKDQATT------LGEIVIMAVPYPALAALAKQYATQLKGKIVVDITNPLNF 95
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMV-GGDKS 132
++V S+ ++ Q L + K A + + T +V G D S
Sbjct: 96 DTWDDLVVPADSSAAQELQQQLPDSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDS 155
Query: 133 SLEKAKPILKCMGRNIVHCGD 153
+ ++ L + G
Sbjct: 156 AKQRFTRALADSPLEVKDAGK 176
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 286 | |||
| 3obb_A | 300 | Probable 3-hydroxyisobutyrate dehydrogenase; struc | 100.0 | |
| 4gbj_A | 297 | 6-phosphogluconate dehydrogenase NAD-binding; stru | 100.0 | |
| 3doj_A | 310 | AT3G25530, dehydrogenase-like protein; gamma-hydro | 100.0 | |
| 3pdu_A | 287 | 3-hydroxyisobutyrate dehydrogenase family protein; | 100.0 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 100.0 | |
| 2h78_A | 302 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601 | 100.0 | |
| 3pef_A | 287 | 6-phosphogluconate dehydrogenase, NAD-binding; gam | 100.0 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 100.0 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 100.0 | |
| 3l6d_A | 306 | Putative oxidoreductase; structural genomics, prot | 100.0 | |
| 2gf2_A | 296 | Hibadh, 3-hydroxyisobutyrate dehydrogenase; struct | 100.0 | |
| 1vpd_A | 299 | Tartronate semialdehyde reductase; structural geno | 100.0 | |
| 3cky_A | 301 | 2-hydroxymethyl glutarate dehydrogenase; rossmann | 100.0 | |
| 4ezb_A | 317 | Uncharacterized conserved protein; structural geno | 100.0 | |
| 1yb4_A | 295 | Tartronic semialdehyde reductase; structural genom | 100.0 | |
| 2uyy_A | 316 | N-PAC protein; long-chain dehydrogenase, cytokine; | 100.0 | |
| 2cvz_A | 289 | Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; | 100.0 | |
| 3qsg_A | 312 | NAD-binding phosphogluconate dehydrogenase-like P; | 100.0 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 100.0 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 100.0 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 100.0 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 100.0 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 100.0 | |
| 1i36_A | 264 | Conserved hypothetical protein MTH1747; NADP bindi | 100.0 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 100.0 | |
| 3ojo_A | 431 | CAP5O; rossmann fold, complex with cofactor NAD an | 100.0 | |
| 1pgj_A | 478 | 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; o | 100.0 | |
| 3pid_A | 432 | UDP-glucose 6-dehydrogenase; rossmann fold, oxidor | 99.98 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 99.97 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 99.97 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 99.97 | |
| 1mv8_A | 436 | GMD, GDP-mannose 6-dehydrogenase; rossman fold, do | 99.96 | |
| 1dlj_A | 402 | UDP-glucose dehydrogenase; rossmann fold, ternary | 99.96 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 99.95 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 99.93 | |
| 1z82_A | 335 | Glycerol-3-phosphate dehydrogenase; TM0378, struct | 99.91 | |
| 1yqg_A | 263 | Pyrroline-5-carboxylate reductase; structural geno | 99.91 | |
| 1evy_A | 366 | Glycerol-3-phosphate dehydrogenase; rossmann fold, | 99.91 | |
| 2ew2_A | 316 | 2-dehydropantoate 2-reductase, putative; alpha-str | 99.91 | |
| 2ahr_A | 259 | Putative pyrroline carboxylate reductase; pyrrolin | 99.9 | |
| 3dtt_A | 245 | NADP oxidoreductase; structural genomics, joint ce | 99.9 | |
| 2izz_A | 322 | Pyrroline-5-carboxylate reductase 1; amino-acid bi | 99.9 | |
| 1txg_A | 335 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxid | 99.89 | |
| 1zej_A | 293 | HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural | 99.87 | |
| 1yj8_A | 375 | Glycerol-3-phosphate dehydrogenase; SGPP, structur | 99.87 | |
| 1ks9_A | 291 | KPA reductase;, 2-dehydropantoate 2-reductase; PAN | 99.87 | |
| 3c24_A | 286 | Putative oxidoreductase; YP_511008.1, structural g | 99.85 | |
| 2qyt_A | 317 | 2-dehydropantoate 2-reductase; APC81190, porphyrom | 99.84 | |
| 1x0v_A | 354 | GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase | 99.84 | |
| 3d1l_A | 266 | Putative NADP oxidoreductase BF3122; structural ge | 99.84 | |
| 3gt0_A | 247 | Pyrroline-5-carboxylate reductase; structural geno | 99.83 | |
| 3tri_A | 280 | Pyrroline-5-carboxylate reductase; amino acid bios | 99.83 | |
| 2dpo_A | 319 | L-gulonate 3-dehydrogenase; structural genomics, N | 99.83 | |
| 2rcy_A | 262 | Pyrroline carboxylate reductase; malaria, structur | 99.82 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 99.78 | |
| 1bg6_A | 359 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L | 99.77 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 99.75 | |
| 1jay_A | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossma | 99.74 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 99.74 | |
| 3ktd_A | 341 | Prephenate dehydrogenase; structural genomics, joi | 99.73 | |
| 3mog_A | 483 | Probable 3-hydroxybutyryl-COA dehydrogenase; struc | 99.72 | |
| 4fgw_A | 391 | Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxi | 99.7 | |
| 2i76_A | 276 | Hypothetical protein; NADP, dehydrogenase, TM1727, | 99.7 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 99.7 | |
| 2pv7_A | 298 | T-protein [includes: chorismate mutase (EC 5.4.99 | 99.69 | |
| 1f0y_A | 302 | HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive | 99.68 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 99.68 | |
| 2yjz_A | 201 | Metalloreductase steap4; oxidoreductase, metabolic | 99.5 | |
| 3b1f_A | 290 | Putative prephenate dehydrogenase; enzyme, 4-hydro | 99.66 | |
| 4huj_A | 220 | Uncharacterized protein; PSI-biology, nysgrc, stru | 99.64 | |
| 2raf_A | 209 | Putative dinucleotide-binding oxidoreductase; NP_7 | 99.62 | |
| 1wdk_A | 715 | Fatty oxidation complex alpha subunit; alpha2BETA2 | 99.61 | |
| 2wtb_A | 725 | MFP2, fatty acid multifunctional protein (ATMFP2); | 99.59 | |
| 2vns_A | 215 | Metalloreductase steap3; metal-binding, transmembr | 99.58 | |
| 3ghy_A | 335 | Ketopantoate reductase protein; oxidoreductase, NA | 99.58 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 99.56 | |
| 3hwr_A | 318 | 2-dehydropantoate 2-reductase; YP_299159.1, PANE/A | 99.54 | |
| 3i83_A | 320 | 2-dehydropantoate 2-reductase; structural genomics | 99.51 | |
| 3hn2_A | 312 | 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, str | 99.51 | |
| 3dfu_A | 232 | Uncharacterized protein from 6-phosphogluconate de | 99.45 | |
| 1np3_A | 338 | Ketol-acid reductoisomerase; A DEEP figure-OF-eigh | 99.43 | |
| 2i99_A | 312 | MU-crystallin homolog; thyroid hormine binding pro | 99.33 | |
| 3g17_A | 294 | Similar to 2-dehydropantoate 2-reductase; structur | 99.24 | |
| 2dc1_A | 236 | L-aspartate dehydrogenase; NAD, oxidoreductase; HE | 99.21 | |
| 3c7a_A | 404 | Octopine dehydrogenase; L) stereospecific opine de | 99.16 | |
| 3gvx_A | 290 | Glycerate dehydrogenase related protein; NYSGXRC, | 99.11 | |
| 3jtm_A | 351 | Formate dehydrogenase, mitochondrial; mitochondrio | 99.05 | |
| 3fr7_A | 525 | Putative ketol-acid reductoisomerase (OS05G057370 | 99.04 | |
| 3ego_A | 307 | Probable 2-dehydropantoate 2-reductase; structural | 99.03 | |
| 3gg9_A | 352 | D-3-phosphoglycerate dehydrogenase oxidoreductase; | 99.03 | |
| 2gcg_A | 330 | Glyoxylate reductase/hydroxypyruvate reductase; NA | 99.02 | |
| 2w2k_A | 348 | D-mandelate dehydrogenase; 2-hydroxyacid dehydroge | 99.02 | |
| 2dbq_A | 334 | Glyoxylate reductase; D-3-phosphoglycerate dehydro | 98.99 | |
| 1mx3_A | 347 | CTBP1, C-terminal binding protein 1; nuclear prote | 98.98 | |
| 4e5n_A | 330 | Thermostable phosphite dehydrogenase; D-2-hydroxya | 98.97 | |
| 4dgs_A | 340 | Dehydrogenase; structural genomics, PSI-biology, N | 98.97 | |
| 1gdh_A | 320 | D-glycerate dehydrogenase; oxidoreductase(CHOH (D) | 98.96 | |
| 4g2n_A | 345 | D-isomer specific 2-hydroxyacid dehydrogenase, Na; | 98.96 | |
| 3ba1_A | 333 | HPPR, hydroxyphenylpyruvate reductase; two domain | 98.95 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 98.95 | |
| 1ygy_A | 529 | PGDH, D-3-phosphoglycerate dehydrogenase; oxidored | 98.94 | |
| 3hg7_A | 324 | D-isomer specific 2-hydroxyacid dehydrogenase FAM | 98.94 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 98.94 | |
| 2pi1_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 98.94 | |
| 2nac_A | 393 | NAD-dependent formate dehydrogenase; oxidoreductas | 98.93 | |
| 3evt_A | 324 | Phosphoglycerate dehydrogenase; structural genomic | 98.93 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 98.92 | |
| 3ado_A | 319 | Lambda-crystallin; L-gulonate 3-dehydrogenase, str | 98.91 | |
| 2j6i_A | 364 | Formate dehydrogenase; oxidoreductase, D-specific- | 98.91 | |
| 2d0i_A | 333 | Dehydrogenase; structural genomics, NPPSFA, nation | 98.9 | |
| 1qp8_A | 303 | Formate dehydrogenase; oxidoreductase; HET: NDP; 2 | 98.87 | |
| 1y81_A | 138 | Conserved hypothetical protein; hyperthermophIle, | 98.86 | |
| 2yq5_A | 343 | D-isomer specific 2-hydroxyacid dehydrogenase; oxi | 98.85 | |
| 4hy3_A | 365 | Phosphoglycerate oxidoreductase; PSI-biology, stru | 98.84 | |
| 3pp8_A | 315 | Glyoxylate/hydroxypyruvate reductase A; structural | 98.8 | |
| 1j4a_A | 333 | D-LDH, D-lactate dehydrogenase; NAD-dependent dehy | 98.8 | |
| 3oet_A | 381 | Erythronate-4-phosphate dehydrogenase; structural | 98.79 | |
| 3k5p_A | 416 | D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, | 98.78 | |
| 2cuk_A | 311 | Glycerate dehydrogenase/glyoxylate reductase; stru | 98.75 | |
| 1sc6_A | 404 | PGDH, D-3-phosphoglycerate dehydrogenase; alloster | 98.75 | |
| 1dxy_A | 333 | D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc | 98.68 | |
| 2duw_A | 145 | Putative COA-binding protein; ligand binding prote | 98.68 | |
| 2d5c_A | 263 | AROE, shikimate 5-dehydrogenase; substrate, dimer, | 98.67 | |
| 2rir_A | 300 | Dipicolinate synthase, A chain; structural genomic | 98.67 | |
| 2o4c_A | 380 | Erythronate-4-phosphate dehydrogenase; erythronate | 98.65 | |
| 1xdw_A | 331 | NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas | 98.65 | |
| 2hk9_A | 275 | Shikimate dehydrogenase; shikimate pathway, drug d | 98.64 | |
| 1x7d_A | 350 | Ornithine cyclodeaminase; binds NAD+, binds L-orni | 98.6 | |
| 2egg_A | 297 | AROE, shikimate 5-dehydrogenase; dimer, X-RAY diff | 98.46 | |
| 3d4o_A | 293 | Dipicolinate synthase subunit A; NP_243269.1, stru | 98.39 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 98.31 | |
| 1omo_A | 322 | Alanine dehydrogenase; two-domain, beta-sandwich-d | 98.3 | |
| 1lss_A | 140 | TRK system potassium uptake protein TRKA homolog; | 98.29 | |
| 3oj0_A | 144 | Glutr, glutamyl-tRNA reductase; structural genomic | 98.29 | |
| 3zwc_A | 742 | Peroxisomal bifunctional enzyme; beta oxidation pa | 98.26 | |
| 3don_A | 277 | Shikimate dehydrogenase; alpha-beta structure, ros | 98.25 | |
| 2z2v_A | 365 | Hypothetical protein PH1688; L-lysine dehydrogenas | 98.21 | |
| 3phh_A | 269 | Shikimate dehydrogenase; shikimate pathway, helico | 98.14 | |
| 1iuk_A | 140 | Hypothetical protein TT1466; structural genomics, | 98.1 | |
| 3fwz_A | 140 | Inner membrane protein YBAL; TRKA-N domain, E.coli | 98.08 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 98.06 | |
| 3u62_A | 253 | Shikimate dehydrogenase; shikimate pathway, oxidor | 98.05 | |
| 3ic5_A | 118 | Putative saccharopine dehydrogenase; structural ge | 98.04 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 98.03 | |
| 3hdj_A | 313 | Probable ornithine cyclodeaminase; APC62486, borde | 98.01 | |
| 1v8b_A | 479 | Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2 | 97.95 | |
| 2glx_A | 332 | 1,5-anhydro-D-fructose reductase; NADP(H) dependen | 97.95 | |
| 3uuw_A | 308 | Putative oxidoreductase with NAD(P)-binding rossm | 97.92 | |
| 3o8q_A | 281 | Shikimate 5-dehydrogenase I alpha; structural geno | 97.92 | |
| 3euw_A | 344 | MYO-inositol dehydrogenase; protein structure init | 97.9 | |
| 3d64_A | 494 | Adenosylhomocysteinase; structural genomics, ssgci | 97.89 | |
| 3kb6_A | 334 | D-lactate dehydrogenase; oxidoreductase, D-LDH, NA | 97.89 | |
| 3llv_A | 141 | Exopolyphosphatase-related protein; NAD(P)-binding | 97.88 | |
| 4hkt_A | 331 | Inositol 2-dehydrogenase; structural genomics, nys | 97.88 | |
| 3h9u_A | 436 | Adenosylhomocysteinase; NAD CO-factor complex, str | 97.88 | |
| 3e9m_A | 330 | Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, | 97.88 | |
| 3q2i_A | 354 | Dehydrogenase; rossmann fold, UDP-sugar binding, N | 97.86 | |
| 3db2_A | 354 | Putative NADPH-dependent oxidoreductase; two domai | 97.85 | |
| 2ho3_A | 325 | Oxidoreductase, GFO/IDH/MOCA family; streptococcus | 97.85 | |
| 1hyh_A | 309 | L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2 | 97.85 | |
| 2d59_A | 144 | Hypothetical protein PH1109; COA binding, structur | 97.84 | |
| 3c1a_A | 315 | Putative oxidoreductase; ZP_00056571.1, oxidoreduc | 97.83 | |
| 1tlt_A | 319 | Putative oxidoreductase (virulence factor MVIM HO; | 97.82 | |
| 2g1u_A | 155 | Hypothetical protein TM1088A; structural genomics, | 97.81 | |
| 3ezy_A | 344 | Dehydrogenase; structural genomics, unknown functi | 97.79 | |
| 2p2s_A | 336 | Putative oxidoreductase; YP_050235.1, structural g | 97.77 | |
| 1xea_A | 323 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.75 | |
| 1npy_A | 271 | Hypothetical shikimate 5-dehydrogenase-like protei | 97.75 | |
| 3e18_A | 359 | Oxidoreductase; dehydrogenase, NAD-binding, struct | 97.74 | |
| 3cea_A | 346 | MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore | 97.7 | |
| 2b0j_A | 358 | 5,10-methenyltetrahydromethanopterin hydrogenase; | 97.68 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 97.65 | |
| 2ewd_A | 317 | Lactate dehydrogenase,; protein-substrate_cofactor | 97.63 | |
| 1p77_A | 272 | Shikimate 5-dehydrogenase; NADPH, oxidoreductase; | 97.63 | |
| 2hmt_A | 144 | YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane | 97.62 | |
| 3pwz_A | 272 | Shikimate dehydrogenase 3; alpha-beta, oxidoreduct | 97.61 | |
| 3rc1_A | 350 | Sugar 3-ketoreductase; sugar biosynthesis, TDP bin | 97.61 | |
| 1nyt_A | 271 | Shikimate 5-dehydrogenase; alpha/beta domains, WID | 97.58 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 97.58 | |
| 1a5z_A | 319 | L-lactate dehydrogenase; oxidoreductase, glycolysi | 97.57 | |
| 3mz0_A | 344 | Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; | 97.55 | |
| 3ec7_A | 357 | Putative dehydrogenase; alpha-beta, structural gen | 97.5 | |
| 1ydw_A | 362 | AX110P-like protein; structural genomics, protein | 97.49 | |
| 1leh_A | 364 | Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi | 97.48 | |
| 3ohs_X | 334 | Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; d | 97.44 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 97.44 | |
| 3evn_A | 329 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.44 | |
| 1guz_A | 310 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 97.41 | |
| 1h6d_A | 433 | Precursor form of glucose-fructose oxidoreductase; | 97.41 | |
| 3btv_A | 438 | Galactose/lactose metabolism regulatory protein GA | 97.39 | |
| 2nvw_A | 479 | Galactose/lactose metabolism regulatory protein GA | 97.38 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 97.34 | |
| 2hjr_A | 328 | Malate dehydrogenase; malaria, structural genomics | 97.33 | |
| 3n58_A | 464 | Adenosylhomocysteinase; ssgcid, hydrolase, structu | 97.32 | |
| 3m2t_A | 359 | Probable dehydrogenase; PSI, SGXNY, structural gen | 97.32 | |
| 3gvp_A | 435 | Adenosylhomocysteinase 3; protein CO-factor comple | 97.31 | |
| 4gmf_A | 372 | Yersiniabactin biosynthetic protein YBTU; rossmann | 97.29 | |
| 3v5n_A | 417 | Oxidoreductase; structural genomics, PSI-biology, | 97.28 | |
| 1pzg_A | 331 | LDH, lactate dehydrogenase; apicomplexa, APAD, tet | 97.27 | |
| 2v6b_A | 304 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ra | 97.26 | |
| 3dty_A | 398 | Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetram | 97.26 | |
| 3moi_A | 387 | Probable dehydrogenase; structural genomics, PSI2, | 97.22 | |
| 2axq_A | 467 | Saccharopine dehydrogenase; rossmann fold variant, | 97.2 | |
| 3jyo_A | 283 | Quinate/shikimate dehydrogenase; enzyme-cofactor c | 97.19 | |
| 3l4b_C | 218 | TRKA K+ channel protien TM1088B; potassium channel | 97.19 | |
| 3bio_A | 304 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 97.18 | |
| 1nvt_A | 287 | Shikimate 5'-dehydrogenase; structural genomics, P | 97.16 | |
| 3l9w_A | 413 | Glutathione-regulated potassium-efflux system Pro | 97.11 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 97.09 | |
| 3ngx_A | 276 | Bifunctional protein fold; methylenetetrahydrofola | 97.07 | |
| 3e82_A | 364 | Putative oxidoreductase; NAD, GFO/IDH/MOCA family, | 97.07 | |
| 1lld_A | 319 | L-lactate dehydrogenase; oxidoreductase(CHOH (D)-N | 97.07 | |
| 1ff9_A | 450 | Saccharopine reductase; lysine biosynthesis, alpha | 97.07 | |
| 3f4l_A | 345 | Putative oxidoreductase YHHX; structural genomics, | 97.04 | |
| 3abi_A | 365 | Putative uncharacterized protein PH1688; L-lysine | 97.01 | |
| 1id1_A | 153 | Putative potassium channel protein; RCK domain, E. | 97.01 | |
| 1pjc_A | 361 | Protein (L-alanine dehydrogenase); oxidoreductase, | 97.0 | |
| 1zh8_A | 340 | Oxidoreductase; TM0312, structural genomics, JO ce | 96.97 | |
| 3kux_A | 352 | Putative oxidoreductase; oxidoreductase family, cs | 96.92 | |
| 3u3x_A | 361 | Oxidoreductase; structural genomics, PSI-biology, | 96.89 | |
| 2ixa_A | 444 | Alpha-N-acetylgalactosaminidase; NAD, A-ECO conver | 96.86 | |
| 4a26_A | 300 | Putative C-1-tetrahydrofolate synthase, cytoplasm; | 96.86 | |
| 1t2d_A | 322 | LDH-P, L-lactate dehydrogenase; ternary complex, o | 96.85 | |
| 3upl_A | 446 | Oxidoreductase; rossmann fold, NADPH binding; 1.50 | 96.84 | |
| 3ulk_A | 491 | Ketol-acid reductoisomerase; branched-chain amino | 96.83 | |
| 2yv1_A | 294 | Succinyl-COA ligase [ADP-forming] subunit alpha; C | 96.82 | |
| 3fbt_A | 282 | Chorismate mutase and shikimate 5-dehydrogenase fu | 96.75 | |
| 2nu8_A | 288 | Succinyl-COA ligase [ADP-forming] subunit alpha; c | 96.73 | |
| 2aef_A | 234 | Calcium-gated potassium channel MTHK; rossmann fol | 96.71 | |
| 3ond_A | 488 | Adenosylhomocysteinase; plant protein, enzyme-subs | 96.7 | |
| 1oi7_A | 288 | Succinyl-COA synthetase alpha chain; SCS, ligase, | 96.59 | |
| 1oju_A | 294 | MDH, malate dehydrogenase; hyperthermophilic, oxid | 96.56 | |
| 1ur5_A | 309 | Malate dehydrogenase; oxidoreductase, tricarboxyli | 96.53 | |
| 1edz_A | 320 | 5,10-methylenetetrahydrofolate dehydrogenase; nucl | 96.48 | |
| 3ff4_A | 122 | Uncharacterized protein; structural genomics, PSI- | 96.47 | |
| 1a4i_A | 301 | Methylenetetrahydrofolate dehydrogenase / methenyl | 96.47 | |
| 1u8x_X | 472 | Maltose-6'-phosphate glucosidase; structural genom | 96.47 | |
| 3tnl_A | 315 | Shikimate dehydrogenase; structural genomics, cent | 96.45 | |
| 1b0a_A | 288 | Protein (fold bifunctional protein); folate, dehyd | 96.45 | |
| 3l07_A | 285 | Bifunctional protein fold; structural genomics, ID | 96.44 | |
| 2yv2_A | 297 | Succinyl-COA synthetase alpha chain; COA-binding d | 96.43 | |
| 1gpj_A | 404 | Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro | 96.42 | |
| 3qy9_A | 243 | DHPR, dihydrodipicolinate reductase; rossmann fold | 96.38 | |
| 2p4q_A | 497 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.35 | |
| 3p2o_A | 285 | Bifunctional protein fold; structural genomics, ce | 96.34 | |
| 4ina_A | 405 | Saccharopine dehydrogenase; structural genomics, P | 96.34 | |
| 2iz1_A | 474 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.34 | |
| 2zyd_A | 480 | 6-phosphogluconate dehydrogenase, decarboxylating; | 96.31 | |
| 3pqe_A | 326 | L-LDH, L-lactate dehydrogenase; FBP, oxidoreductas | 96.3 | |
| 3gdo_A | 358 | Uncharacterized oxidoreductase YVAA; structural ge | 96.28 | |
| 2c2x_A | 281 | Methylenetetrahydrofolate dehydrogenase- methenylt | 96.26 | |
| 1y6j_A | 318 | L-lactate dehydrogenase; southeast collaboratory f | 96.16 | |
| 3oqb_A | 383 | Oxidoreductase; structural genomics, protein struc | 96.15 | |
| 3t4e_A | 312 | Quinate/shikimate dehydrogenase; structural genomi | 96.13 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 96.09 | |
| 2fp4_A | 305 | Succinyl-COA ligase [GDP-forming] alpha-chain, mit | 96.09 | |
| 3fhl_A | 362 | Putative oxidoreductase; NAD-binding domain, PSI-2 | 96.09 | |
| 4a5o_A | 286 | Bifunctional protein fold; oxidoreductase, hydrola | 96.07 | |
| 4gqa_A | 412 | NAD binding oxidoreductase; structural genomics, P | 96.04 | |
| 1f06_A | 320 | MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH | 96.02 | |
| 3gvi_A | 324 | Malate dehydrogenase; NAD, oxidoreductase, tricarb | 96.01 | |
| 3i23_A | 349 | Oxidoreductase, GFO/IDH/MOCA family; structural ge | 96.01 | |
| 4had_A | 350 | Probable oxidoreductase protein; structural genomi | 96.0 | |
| 1s6y_A | 450 | 6-phospho-beta-glucosidase; hydrolase, structural | 95.99 | |
| 3fi9_A | 343 | Malate dehydrogenase; structural genomics, oxidore | 95.99 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 95.86 | |
| 3o9z_A | 312 | Lipopolysaccaride biosynthesis protein WBPB; oxido | 95.78 | |
| 3oa2_A | 318 | WBPB; oxidoreductase, sugar biosynthesis, dehydrog | 95.77 | |
| 1obb_A | 480 | Maltase, alpha-glucosidase; glycosidase, sulfinic | 95.73 | |
| 3p7m_A | 321 | Malate dehydrogenase; putative dehydrogenase, enzy | 95.71 | |
| 3d0o_A | 317 | L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, gly | 95.62 | |
| 3fef_A | 450 | Putative glucosidase LPLD; gulosidase, structural | 95.6 | |
| 3qvo_A | 236 | NMRA family protein; structural genomics, PSI-biol | 95.55 | |
| 4fb5_A | 393 | Probable oxidoreductase protein; PSI-biology, nysg | 95.52 | |
| 1vl6_A | 388 | Malate oxidoreductase; TM0542, NAD-dependent malic | 95.47 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 95.45 | |
| 1ldn_A | 316 | L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NA | 95.32 | |
| 2pgd_A | 482 | 6-phosphogluconate dehydrogenase; oxidoreductase ( | 95.3 | |
| 3ldh_A | 330 | Lactate dehydrogenase; oxidoreductase, CHOH donor, | 95.27 | |
| 1lnq_A | 336 | MTHK channels, potassium channel related protein; | 95.26 | |
| 1lc0_A | 294 | Biliverdin reductase A; oxidoreductase, tetrapyrro | 95.19 | |
| 3nep_X | 314 | Malate dehydrogenase; halophIle, molecular adpatat | 95.17 | |
| 4h3v_A | 390 | Oxidoreductase domain protein; structural genomics | 95.11 | |
| 1smk_A | 326 | Malate dehydrogenase, glyoxysomal; tricarboxylic c | 95.03 | |
| 3tl2_A | 315 | Malate dehydrogenase; center for structural genomi | 95.02 | |
| 1mld_A | 314 | Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D | 94.99 | |
| 3tum_A | 269 | Shikimate dehydrogenase family protein; rossmann-f | 94.98 | |
| 3vku_A | 326 | L-LDH, L-lactate dehydrogenase; rossmann fold, NAD | 94.96 | |
| 2i6t_A | 303 | Ubiquitin-conjugating enzyme E2-like isoform A; L- | 94.91 | |
| 3r6d_A | 221 | NAD-dependent epimerase/dehydratase; structural ge | 94.89 | |
| 4b4u_A | 303 | Bifunctional protein fold; oxidoreductase; HET: NA | 94.76 | |
| 1c1d_A | 355 | L-phenylalanine dehydrogenase; amino acid dehydrog | 94.74 | |
| 3ged_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 94.71 | |
| 1ez4_A | 318 | Lactate dehydrogenase; rossmann fold, oxidoreducta | 94.71 | |
| 2zqz_A | 326 | L-LDH, L-lactate dehydrogenase; oxidoreductase, ro | 94.7 | |
| 2d4a_B | 308 | Malate dehydrogenase; archaea, hyperthermophIle, o | 94.64 | |
| 3mtj_A | 444 | Homoserine dehydrogenase; rossmann-fold, PSI, MCSG | 94.39 | |
| 4f3y_A | 272 | DHPR, dihydrodipicolinate reductase; structural ge | 94.38 | |
| 4ew6_A | 330 | D-galactose-1-dehydrogenase protein; nysgrc, PSI-b | 94.29 | |
| 3guy_A | 230 | Short-chain dehydrogenase/reductase SDR; structura | 94.29 | |
| 2xxj_A | 310 | L-LDH, L-lactate dehydrogenase; oxidoreductase, hy | 94.26 | |
| 4fn4_A | 254 | Short chain dehydrogenase; NADH-binding, rossmann | 94.2 | |
| 3ijp_A | 288 | DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, | 94.03 | |
| 3e48_A | 289 | Putative nucleoside-diphosphate-sugar epimerase; a | 93.99 | |
| 3ip3_A | 337 | Oxidoreductase, putative; structural genomics, PSI | 93.87 | |
| 3n74_A | 261 | 3-ketoacyl-(acyl-carrier-protein) reductase; seatt | 93.86 | |
| 4aj2_A | 331 | L-lactate dehydrogenase A chain; oxidoreductase-in | 93.76 | |
| 2q3e_A | 467 | UDP-glucose 6-dehydrogenase; hexamer, structural g | 93.72 | |
| 4a7p_A | 446 | UDP-glucose dehydrogenase; oxidoreductase, carbohy | 93.66 | |
| 1hdo_A | 206 | Biliverdin IX beta reductase; foetal metabolism, H | 93.59 | |
| 3dii_A | 247 | Short-chain dehydrogenase/reductase SDR; SCOR, ros | 93.55 | |
| 3ftp_A | 270 | 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid | 93.5 | |
| 3f1l_A | 252 | Uncharacterized oxidoreductase YCIK; E. coli, NADP | 93.49 | |
| 3asu_A | 248 | Short-chain dehydrogenase/reductase SDR; SDR famil | 93.47 | |
| 3gg2_A | 450 | Sugar dehydrogenase, UDP-glucose/GDP-mannose dehyd | 93.43 | |
| 3r1i_A | 276 | Short-chain type dehydrogenase/reductase; structur | 93.43 | |
| 3vtf_A | 444 | UDP-glucose 6-dehydrogenase; two discrete alpha/be | 93.42 | |
| 3ucx_A | 264 | Short chain dehydrogenase; ssgcid, seattle structu | 93.37 | |
| 4g81_D | 255 | Putative hexonate dehydrogenase; enzyme function i | 93.33 | |
| 1j5p_A | 253 | Aspartate dehydrogenase; TM1643, structural genomi | 93.33 | |
| 4g65_A | 461 | TRK system potassium uptake protein TRKA; structur | 93.32 | |
| 3eag_A | 326 | UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME | 93.28 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 93.24 | |
| 3tfo_A | 264 | Putative 3-oxoacyl-(acyl-carrier-protein) reducta; | 93.19 | |
| 3op4_A | 248 | 3-oxoacyl-[acyl-carrier protein] reductase; 3-keto | 93.16 | |
| 4fgs_A | 273 | Probable dehydrogenase protein; PSI-biology, nysgr | 93.12 | |
| 1uls_A | 245 | Putative 3-oxoacyl-acyl carrier protein reductase; | 93.12 | |
| 3lyl_A | 247 | 3-oxoacyl-(acyl-carrier-protein) reductase; alpha | 93.12 | |
| 4e6p_A | 259 | Probable sorbitol dehydrogenase (L-iditol 2-dehyd; | 93.0 | |
| 2jl1_A | 287 | Triphenylmethane reductase; oxidoreductase, biorem | 92.99 | |
| 4dqx_A | 277 | Probable oxidoreductase protein; structural genomi | 92.92 | |
| 2o3j_A | 481 | UDP-glucose 6-dehydrogenase; structural genomics, | 92.88 | |
| 3ak4_A | 263 | NADH-dependent quinuclidinone reductase; SDR, (R)- | 92.85 | |
| 2r6j_A | 318 | Eugenol synthase 1; phenylpropene, PIP reductase, | 92.81 | |
| 3imf_A | 257 | Short chain dehydrogenase; structural genomics, in | 92.79 | |
| 2zcu_A | 286 | Uncharacterized oxidoreductase YTFG; alpha-beta sa | 92.76 | |
| 1p9l_A | 245 | Dihydrodipicolinate reductase; oxidoreductase, lys | 92.76 | |
| 2ehd_A | 234 | Oxidoreductase, oxidoreductase, short-chain dehydr | 92.76 | |
| 2nwq_A | 272 | Probable short-chain dehydrogenase; oxidoreductase | 92.75 | |
| 1lu9_A | 287 | Methylene tetrahydromethanopterin dehydrogenase; a | 92.75 | |
| 4dyv_A | 272 | Short-chain dehydrogenase/reductase SDR; structura | 92.72 | |
| 3l6e_A | 235 | Oxidoreductase, short-chain dehydrogenase/reducta; | 92.71 | |
| 3sju_A | 279 | Keto reductase; short-chain dehydrogenase, oxidore | 92.68 | |
| 3gaf_A | 256 | 7-alpha-hydroxysteroid dehydrogenase; seattle stru | 92.62 | |
| 3rkr_A | 262 | Short chain oxidoreductase; rossmann fold; HET: NA | 92.6 | |
| 2gas_A | 307 | Isoflavone reductase; NADPH-dependent reductase, o | 92.51 | |
| 3dhn_A | 227 | NAD-dependent epimerase/dehydratase; reductase, PF | 92.49 | |
| 1hdc_A | 254 | 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxi | 92.47 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 92.44 | |
| 4fs3_A | 256 | Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; | 92.42 | |
| 3g79_A | 478 | NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; | 92.42 | |
| 3gvc_A | 277 | Oxidoreductase, probable short-chain type dehydrog | 92.41 | |
| 2a4k_A | 263 | 3-oxoacyl-[acyl carrier protein] reductase; reduct | 92.38 | |
| 4eso_A | 255 | Putative oxidoreductase; NADP, structural genomics | 92.37 | |
| 1qyc_A | 308 | Phenylcoumaran benzylic ether reductase PT1; NADPH | 92.34 | |
| 3grp_A | 266 | 3-oxoacyl-(acyl carrierprotein) reductase; structu | 92.3 | |
| 3lk7_A | 451 | UDP-N-acetylmuramoylalanine--D-glutamate ligase; a | 92.28 | |
| 1qyd_A | 313 | Pinoresinol-lariciresinol reductase; NADPH-depende | 92.27 | |
| 2y0c_A | 478 | BCEC, UDP-glucose dehydrogenase; oxidoreductase, c | 92.23 | |
| 3h7a_A | 252 | Short chain dehydrogenase; oxidoreductase, PSI-2, | 92.2 | |
| 3zv4_A | 281 | CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; ox | 92.18 | |
| 4dry_A | 281 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 92.16 | |
| 2jah_A | 247 | Clavulanic acid dehydrogenase; short-chain dehydro | 92.12 | |
| 3rwb_A | 247 | TPLDH, pyridoxal 4-dehydrogenase; short chain dehy | 92.12 | |
| 2csu_A | 457 | 457AA long hypothetical protein; structural genomi | 92.11 | |
| 3nrc_A | 280 | Enoyl-[acyl-carrier-protein] reductase (NADH); ros | 92.11 | |
| 3i1j_A | 247 | Oxidoreductase, short chain dehydrogenase/reducta; | 92.1 | |
| 4ibo_A | 271 | Gluconate dehydrogenase; enzyme function initiativ | 92.1 | |
| 3tpc_A | 257 | Short chain alcohol dehydrogenase-related dehydro; | 92.08 | |
| 3m1a_A | 281 | Putative dehydrogenase; short, PSI, MCSG, structur | 92.05 | |
| 2x4g_A | 342 | Nucleoside-diphosphate-sugar epimerase; isomerase; | 91.99 | |
| 1geg_A | 256 | Acetoin reductase; SDR family, oxidoreductase; HET | 91.99 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 91.95 | |
| 1yde_A | 270 | Retinal dehydrogenase/reductase 3; oxidoreductase, | 91.93 | |
| 3c1o_A | 321 | Eugenol synthase; phenylpropene, PIP reductase, sh | 91.92 | |
| 3pk0_A | 262 | Short-chain dehydrogenase/reductase SDR; ssgcid, s | 91.85 | |
| 3l77_A | 235 | Short-chain alcohol dehydrogenase; oxidoreductase; | 91.84 | |
| 3awd_A | 260 | GOX2181, putative polyol dehydrogenase; oxidoreduc | 91.84 | |
| 3ai3_A | 263 | NADPH-sorbose reductase; rossmann-fold, NADPH-depe | 91.8 | |
| 1nff_A | 260 | Putative oxidoreductase RV2002; directed evolution | 91.77 | |
| 1jw9_B | 249 | Molybdopterin biosynthesis MOEB protein; MOEB: mod | 91.76 | |
| 2rhc_B | 277 | Actinorhodin polyketide ketoreductase; oxidoreduct | 91.71 | |
| 3tzq_B | 271 | Short-chain type dehydrogenase/reductase; ssgcid, | 91.67 | |
| 3tjr_A | 301 | Short chain dehydrogenase; structural genomics, se | 91.63 | |
| 3cxt_A | 291 | Dehydrogenase with different specificities; rossma | 91.58 | |
| 1dih_A | 273 | Dihydrodipicolinate reductase; oxidoreductase; HET | 91.55 | |
| 3v8b_A | 283 | Putative dehydrogenase, possibly 3-oxoacyl-[acyl- | 91.53 | |
| 2wm3_A | 299 | NMRA-like family domain containing protein 1; unkn | 91.5 | |
| 2zat_A | 260 | Dehydrogenase/reductase SDR family member 4; alpha | 91.5 | |
| 1zk4_A | 251 | R-specific alcohol dehydrogenase; short chain redu | 91.49 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 91.48 | |
| 2ew8_A | 249 | (S)-1-phenylethanol dehydrogenase; transferase; 2. | 91.48 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 91.46 | |
| 1xq6_A | 253 | Unknown protein; structural genomics, protein stru | 91.37 | |
| 2ae2_A | 260 | Protein (tropinone reductase-II); oxidoreductase, | 91.37 | |
| 1b8p_A | 329 | Protein (malate dehydrogenase); oxidoreductase; 1. | 91.36 | |
| 1hxh_A | 253 | 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-b | 91.35 | |
| 4egf_A | 266 | L-xylulose reductase; structural genomics, ssgcid, | 91.32 | |
| 3p19_A | 266 | BFPVVD8, putative blue fluorescent protein; rossma | 91.29 | |
| 1iy8_A | 267 | Levodione reductase; oxidoreductase; HET: NAD; 1.6 | 91.28 | |
| 3rih_A | 293 | Short chain dehydrogenase or reductase; structural | 91.27 | |
| 3svt_A | 281 | Short-chain type dehydrogenase/reductase; ssgcid, | 91.25 | |
| 3i6i_A | 346 | Putative leucoanthocyanidin reductase 1; rossmann | 91.24 | |
| 1fmc_A | 255 | 7 alpha-hydroxysteroid dehydrogenase; short-chain | 91.24 | |
| 1yb1_A | 272 | 17-beta-hydroxysteroid dehydrogenase type XI; shor | 91.24 | |
| 3gem_A | 260 | Short chain dehydrogenase; structural genomics, AP | 91.23 | |
| 1ae1_A | 273 | Tropinone reductase-I; oxidoreductase, tropane alk | 91.22 | |
| 2vt3_A | 215 | REX, redox-sensing transcriptional repressor REX; | 91.2 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 91.13 | |
| 2bka_A | 242 | CC3, TAT-interacting protein TIP30; NADPH, PEG600, | 91.13 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 91.13 | |
| 2qrj_A | 394 | Saccharopine dehydrogenase, NAD+, L-lysine- formin | 91.05 | |
| 3lf2_A | 265 | Short chain oxidoreductase Q9HYA2; SDR, SCOR, ross | 90.89 | |
| 3tox_A | 280 | Short chain dehydrogenase; structural genomics, PS | 90.87 | |
| 2czc_A | 334 | Glyceraldehyde-3-phosphate dehydrogenase; glycolys | 90.84 | |
| 1xkq_A | 280 | Short-chain reductase family member (5D234); parra | 90.8 | |
| 2uvd_A | 246 | 3-oxoacyl-(acyl-carrier-protein) reductase; beta-k | 90.77 | |
| 3sx2_A | 278 | Putative 3-ketoacyl-(acyl-carrier-protein) reduct; | 90.74 | |
| 3pgx_A | 280 | Carveol dehydrogenase; structural genomics, seattl | 90.73 | |
| 2pd6_A | 264 | Estradiol 17-beta-dehydrogenase 8; short-chain deh | 90.71 | |
| 4gwg_A | 484 | 6-phosphogluconate dehydrogenase, decarboxylating; | 90.62 | |
| 2wsb_A | 254 | Galactitol dehydrogenase; oxidoreductase, SDR, ros | 90.48 | |
| 3e03_A | 274 | Short chain dehydrogenase; structural genomics, PS | 90.45 | |
| 1zem_A | 262 | Xylitol dehydrogenase; rossmann fold, dinucleotide | 90.44 | |
| 1edo_A | 244 | Beta-keto acyl carrier protein reductase; nucleoti | 90.36 | |
| 3o38_A | 266 | Short chain dehydrogenase; tuberculosis, ortholog | 90.36 | |
| 3ppi_A | 281 | 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, de | 90.35 | |
| 3sc4_A | 285 | Short chain dehydrogenase (A0QTM2 homolog); ssgcid | 90.35 | |
| 1nvm_B | 312 | Acetaldehyde dehydrogenase (acylating), 4-hydroxy- | 90.29 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 90.29 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 90.26 | |
| 1vl8_A | 267 | Gluconate 5-dehydrogenase; TM0441, structural geno | 90.25 | |
| 3k31_A | 296 | Enoyl-(acyl-carrier-protein) reductase; ssgcid, NI | 90.24 | |
| 1xhl_A | 297 | Short-chain dehydrogenase/reductase family member | 90.19 | |
| 2pnf_A | 248 | 3-oxoacyl-[acyl-carrier-protein] reductase; short | 90.18 | |
| 1cyd_A | 244 | Carbonyl reductase; short-chain dehydrogenase, oxi | 90.16 | |
| 5nul_A | 138 | Flavodoxin; electron transport, flavoprotein, FMN; | 90.12 | |
| 2cfc_A | 250 | 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidor | 90.1 | |
| 3oid_A | 258 | Enoyl-[acyl-carrier-protein] reductase [NADPH]; fa | 90.09 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 90.08 | |
| 2o23_A | 265 | HADH2 protein; HSD17B10, schad, ERAB, type II HADH | 90.05 | |
| 1o6z_A | 303 | MDH, malate dehydrogenase; halophilic, ION-binding | 89.94 | |
| 1xg5_A | 279 | ARPG836; short chain dehydrogenase, human, SGC, st | 89.93 | |
| 3afn_B | 258 | Carbonyl reductase; alpha/beta/alpha, rossmann-fol | 89.92 | |
| 1w6u_A | 302 | 2,4-dienoyl-COA reductase, mitochondrial precursor | 89.91 | |
| 3do5_A | 327 | HOM, homoserine dehydrogenase; NP_069768.1, putati | 89.86 | |
| 2gdz_A | 267 | NAD+-dependent 15-hydroxyprostaglandin dehydrogen; | 89.77 | |
| 3m2p_A | 311 | UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J | 89.73 | |
| 1xq1_A | 266 | Putative tropinone reducatse; structural genomics, | 89.7 | |
| 1mxh_A | 276 | Pteridine reductase 2; SDR topology, protein-subst | 89.68 | |
| 1qsg_A | 265 | Enoyl-[acyl-carrier-protein] reductase; enoyl redu | 89.67 | |
| 4imr_A | 275 | 3-oxoacyl-(acyl-carrier-protein) reductase; oxidor | 89.67 | |
| 4fc7_A | 277 | Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossman | 89.66 | |
| 2p91_A | 285 | Enoyl-[acyl-carrier-protein] reductase [NADH]; NAD | 89.62 | |
| 4gkb_A | 258 | 3-oxoacyl-[acyl-carrier protein] reductase; putati | 89.59 | |
| 3ioy_A | 319 | Short-chain dehydrogenase/reductase SDR; structura | 89.55 | |
| 3tsc_A | 277 | Putative oxidoreductase; structural genomics, seat | 89.54 | |
| 1spx_A | 278 | Short-chain reductase family member (5L265); paral | 89.5 | |
| 1x1t_A | 260 | D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, S | 89.49 | |
| 3grk_A | 293 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.44 | |
| 2qq5_A | 260 | DHRS1, dehydrogenase/reductase SDR family member 1 | 89.4 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 89.4 | |
| 2d1y_A | 256 | Hypothetical protein TT0321; strucrtural genomics, | 89.39 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 89.38 | |
| 1xgk_A | 352 | Nitrogen metabolite repression regulator NMRA; ros | 89.38 | |
| 3dfz_A | 223 | SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase | 89.31 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 89.27 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 89.25 | |
| 3s55_A | 281 | Putative short-chain dehydrogenase/reductase; stru | 89.24 | |
| 1yo6_A | 250 | Putative carbonyl reductase sniffer; tyrosine-depe | 89.18 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 89.15 | |
| 1cf2_P | 337 | Protein (glyceraldehyde-3-phosphate dehydrogenase) | 89.14 | |
| 3d3w_A | 244 | L-xylulose reductase; uronate cycle, short-chain d | 89.13 | |
| 3pxx_A | 287 | Carveol dehydrogenase; structural genomics, seattl | 89.11 | |
| 2pd4_A | 275 | Enoyl-[acyl-carrier-protein] reductase [NADH]; ant | 89.1 | |
| 1vkn_A | 351 | N-acetyl-gamma-glutamyl-phosphate reductase; TM178 | 89.1 | |
| 3ek2_A | 271 | Enoyl-(acyl-carrier-protein) reductase (NADH); ssg | 89.05 | |
| 1gee_A | 261 | Glucose 1-dehydrogenase; short-chain dehydrogenase | 89.05 | |
| 3t7c_A | 299 | Carveol dehydrogenase; structural genomics, seattl | 89.05 | |
| 3rd5_A | 291 | Mypaa.01249.C; ssgcid, structural genomics, seattl | 89.02 | |
| 2z1n_A | 260 | Dehydrogenase; reductase, SDR, oxidoreductase; 1.8 | 89.01 | |
| 3f9i_A | 249 | 3-oxoacyl-[acyl-carrier-protein] reductase; 3-keto | 89.01 | |
| 1zmt_A | 254 | Haloalcohol dehalogenase HHEC; halohydrin dehaloge | 88.99 | |
| 3nyw_A | 250 | Putative oxidoreductase; fatty acid synthesis,3-ox | 88.94 | |
| 3uve_A | 286 | Carveol dehydrogenase ((+)-trans-carveol dehydrog; | 88.92 | |
| 3dr3_A | 337 | N-acetyl-gamma-glutamyl-phosphate reductase; csgid | 88.92 | |
| 1zmo_A | 244 | Halohydrin dehalogenase; haloalcohol dehalogenase, | 88.82 | |
| 2b4q_A | 276 | Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier | 88.78 | |
| 2nm0_A | 253 | Probable 3-oxacyl-(acyl-carrier-protein) reductas; | 88.77 | |
| 2c07_A | 285 | 3-oxoacyl-(acyl-carrier protein) reductase; oxidor | 88.72 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 88.7 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 88.58 | |
| 3a28_C | 258 | L-2.3-butanediol dehydrogenase; chiral substrate r | 88.57 | |
| 3ing_A | 325 | Homoserine dehydrogenase; NP_394635.1, structural | 88.54 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 88.5 | |
| 3osu_A | 246 | 3-oxoacyl-[acyl-carrier-protein] reductase; struct | 88.49 | |
| 4e3z_A | 272 | Putative oxidoreductase protein; PSI-biology, stru | 88.46 |
| >3obb_A Probable 3-hydroxyisobutyrate dehydrogenase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: EPE; 2.20A {Pseudomonas aeruginosa} PDB: 3q3c_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-64 Score=436.47 Aligned_cols=285 Identities=45% Similarity=0.733 Sum_probs=276.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.+||+||+++||+|++|||++++++++.+.|++.++|++|++++||+||+|||+++++++|+.+.+|+.+.+++|++
T Consensus 13 ~MG~~mA~~L~~~G~~v~v~dr~~~~~~~l~~~Ga~~a~s~~e~~~~~dvv~~~l~~~~~v~~V~~~~~g~~~~~~~g~i 92 (300)
T 3obb_A 13 HMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTL 92 (300)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTTCSEEEECCSCHHHHHHHHHSSSSSTTSCCC-CE
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHcCCEEcCCHHHHHhcCCceeecCCchHHHHHHHhchhhhhhcCCCCCE
Confidence 49999999999999999999999999999999999999999999999999999999999999999998999999999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
|||+||++|.+++++++++.++|+.|+|+||+|++..++.|++++|+||+++.+++++|+|+.++++++|+|+.|+|+.+
T Consensus 93 iId~sT~~p~~~~~~a~~~~~~G~~~lDaPVsGg~~~A~~G~L~imvGG~~~~~~~~~p~l~~~g~~i~~~G~~G~g~~~ 172 (300)
T 3obb_A 93 VLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAGPDGAGQVA 172 (300)
T ss_dssp EEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCEEEecCCCCCHHHHHhCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEeCCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|++.+.++.+++|++.++++.|+|++.++++++.+++.||.++.+.|.+......+..++|.++|+++++.||+++
T Consensus 173 Kl~~N~l~~~~~~a~aEa~~la~~~Gld~~~~~~vl~~~~~~s~~~~~~~p~~~~~~~~~~~~~~~~~f~~~l~~KDl~l 252 (300)
T 3obb_A 173 KVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQLMAKDLGL 252 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTTSTTSGGGGTTCSSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCcccchHHHhhccccchhhhccccccCCccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888887777667778899999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
+.+++++.|+++|+.+.++++|+++.++|+|++|+++|++++++.
T Consensus 253 ~~~~A~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~sal~~~~e~~ 297 (300)
T 3obb_A 253 AQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPT 297 (300)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTT
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999875
|
| >4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-59 Score=404.22 Aligned_cols=276 Identities=18% Similarity=0.295 Sum_probs=255.0
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.+||++|+++||+|++|||++++++++.+.|+..++|+.|+++++|+||+|||++.++++++.+ .+.+.+.++++
T Consensus 15 ~MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~G~~~~~s~~e~~~~~dvvi~~l~~~~~~~~v~~~--~~~~~~~~~~i 92 (297)
T 4gbj_A 15 NLGTPIAEILLEAGYELVVWNRTASKAEPLTKLGATVVENAIDAITPGGIVFSVLADDAAVEELFSM--ELVEKLGKDGV 92 (297)
T ss_dssp TTHHHHHHHHHHTTCEEEEC-------CTTTTTTCEECSSGGGGCCTTCEEEECCSSHHHHHHHSCH--HHHHHHCTTCE
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCeEeCCHHHHHhcCCceeeeccchhhHHHHHHH--HHHhhcCCCeE
Confidence 4999999999999999999999999999999999999999999999999999999999999998764 46778899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecC-CcchHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCG-DSGNGQV 159 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g-~~g~a~~ 159 (286)
|||+||++|.+++++++.+.++|+.|+|+||+|++..+..|++++|+||+++.+++++|+|+.++++++|+| ++|+|++
T Consensus 93 iid~sT~~p~~~~~~~~~~~~~g~~~ldapVsGg~~~a~~g~l~im~gG~~~~~~~~~~~l~~~g~~i~~~g~~~G~g~~ 172 (297)
T 4gbj_A 93 HVSMSTISPETSRQLAQVHEWYGAHYVGAPIFARPEAVRAKVGNICLSGNAGAKERIKPIVENFVKGVFDFGDDPGAANV 172 (297)
T ss_dssp EEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCCEEEEEECHHHHHHHHHHHHTTCSEEEECCSCTTHHHH
T ss_pred EEECCCCChHHHHHHHHHHHhcCCceecCCcCCCccccccccceeecccchhHHHHHHHHHHHhhCCeEEecCCccHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999 4899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCC-CccchhHHHHH
Q psy764 160 AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNG-GFKISLLAKDM 238 (286)
Q Consensus 160 ~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-~f~~~~~~kd~ 238 (286)
+|+++|++.+.++++++|++.+++++|+|+++++++++.+++.||.++.+.+ .+..++|.| +|+++++.||+
T Consensus 173 ~Kl~~N~~~~~~~~~~aEa~~la~~~Gld~~~~~~~l~~~~~~s~~~~~~~~-------~~~~~~~~p~~f~~~l~~KDl 245 (297)
T 4gbj_A 173 IKLAGNFMIACSLEMMGEAFTMAEKNGISRQSIYEMLTSTLFAAPIFQNYGK-------LVASNTYEPVAFRFPLGLKDI 245 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTTTCSHHHHHHHH-------HHHHTCCCSCSSBHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhcccCchhhccCc-------cccCCCCCCccchhHHHHHHH
Confidence 9999999999999999999999999999999999999999999998876654 234788886 89999999999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 239 KLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 239 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
+++.+++++.|+++|+.+.++++|+++.++|+|++||++++++++++
T Consensus 246 ~l~~~~A~~~g~~~p~~~~~~~~~~~a~~~G~g~~D~sal~~~~~~~ 292 (297)
T 4gbj_A 246 NLTLQTASDVNAPMPFADIIRNRFISGLAKGRENLDWGALALGASDD 292 (297)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGHHHHHH
T ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999874
|
| >3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-51 Score=355.61 Aligned_cols=277 Identities=25% Similarity=0.369 Sum_probs=262.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+++|.+|+++||+|++|||++++++.+.+.|+..++++.++++++|+||+|||++.++++++++.+++.+.+++|++|
T Consensus 32 mG~~~A~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~~v 111 (310)
T 3doj_A 32 MGKAMSMNLLKNGFKVTVWNRTLSKCDELVEHGASVCESPAEVIKKCKYTIAMLSDPCAALSVVFDKGGVLEQICEGKGY 111 (310)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEE
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeEcCCHHHHHHhCCEEEEEcCCHHHHHHHHhCchhhhhccCCCCEE
Confidence 89999999999999999999999999999999999999999999999999999999889999996555688889999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAK 161 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~K 161 (286)
||+||+.|.+.+++.+.+.++|+.|+++|++|++..+..|++++++||+++.+++++++|+.+|++++++|+.|.++.+|
T Consensus 112 v~~st~~~~~~~~~~~~~~~~g~~~v~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~K 191 (310)
T 3doj_A 112 IDMSTVDAETSLKINEAITGKGGRFVEGPVSGSKKPAEDGQLIILAAGDKALFEESIPAFDVLGKRSFYLGQVGNGAKMK 191 (310)
T ss_dssp EECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHcCCEEEeCCCCCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhCCCEEEeCCcCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHH
Q psy764 162 LCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLA 241 (286)
Q Consensus 162 l~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~ 241 (286)
+++|.+.+.++.+++|++.++++.|+|++++.++++.+++.||.++++.+ .+.+++|.++|+++++.||++++
T Consensus 192 l~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~f~~~~~~KDl~~~ 264 (310)
T 3doj_A 192 LIVNMIMGSMMNAFSEGLVLADKSGLSSDTLLDILDLGAMTNPMFKGKGP-------SMNKSSYPPAFPLKHQQKDMRLA 264 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHSTTCCHHHHHHHH-------HHHTTCCCCSSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhh-------hhhcCCCCCCccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888888765533 23478899999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 242 EDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 242 ~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
.+++++.|+++|+++.++++|+.+.+.|+|++||+++++++++.
T Consensus 265 ~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 308 (310)
T 3doj_A 265 LALGDENAVSMPVAAAANEAFKKARSLGLGDLDFSAVIEAVKFS 308 (310)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHCC
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999864
|
| >3pdu_A 3-hydroxyisobutyrate dehydrogenase family protein; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R glyoxylate metabolism; HET: NAP; 1.89A {Geobacter sulfurreducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-50 Score=349.50 Aligned_cols=276 Identities=27% Similarity=0.416 Sum_probs=260.9
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||+++|.+|+++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||++.++++++.+.+++.+.+++|++
T Consensus 11 ~mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~advvi~~v~~~~~~~~v~~~~~~l~~~l~~g~~ 90 (287)
T 3pdu_A 11 IMGGPMAANLVRAGFDVTVWNRNPAKCAPLVALGARQASSPAEVCAACDITIAMLADPAAAREVCFGANGVLEGIGGGRG 90 (287)
T ss_dssp TTHHHHHHHHHHHTCCEEEECSSGGGGHHHHHHTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGTCCTTCE
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHHcCCEEEEEcCCHHHHHHHHcCchhhhhcccCCCE
Confidence 48999999999999999999999999999998999999999999999999999999988999999655568888999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
|||+||+.|.+.+++.+.+.++|++|+++|+++++..+..|++++++||+++.+++++++|+.++++++++|+.|.++.+
T Consensus 91 vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~ 170 (287)
T 3pdu_A 91 YIDMSTVDDETSTAIGAAVTARGGRFLEAPVSGTKKPAEDGTLIILAAGDQSLFTDAGPAFAALGKKCLHLGEVGQGARM 170 (287)
T ss_dssp EEECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEECSSTTHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCEEEECCccCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCEEEcCCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|.+.+.++.+++|++.++++.|+|++++.++++.+++.||.++++.+ .+.+++|.++|+++++.||+++
T Consensus 171 Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~kd~~~ 243 (287)
T 3pdu_A 171 KLVVNMIMGQMMTALGEGMALGRNCGLDGGQLLEVLDAGAMANPMFKGKGQ-------MLLSGEFPTSFPLKHMQKDLRL 243 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHH-------HHHHTCCCCSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccChHHHhhcc-------ccccCCCCCCCcHHHHHHHHHH
Confidence 999999999999999999999999999999999999999989998766543 2347888999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHh
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
+.+++++.|+++|+.+.++++|+++.+.|+|++||++++++++
T Consensus 244 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~~~~d~~~~~~~~~ 286 (287)
T 3pdu_A 244 AVELGDRLGQPLHGAATANESFKRARAAGHADEDFAAVFRVLE 286 (287)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHhcCCCcCCHHHHHHHHh
Confidence 9999999999999999999999999999999999999999986
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-50 Score=353.28 Aligned_cols=276 Identities=25% Similarity=0.376 Sum_probs=260.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||+++|.+|+++||+|++|||++++.+.+.+.|+..+.+++++++++|+||+|||++.+++.++.+. ++.+.+.++++
T Consensus 41 ~mG~~~a~~l~~~G~~V~~~dr~~~~~~~l~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~~~-~~~~~l~~~~~ 119 (320)
T 4dll_A 41 SMGLPMARRLCEAGYALQVWNRTPARAASLAALGATIHEQARAAARDADIVVSMLENGAVVQDVLFAQ-GVAAAMKPGSL 119 (320)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCEEESSHHHHHTTCSEEEECCSSHHHHHHHHTTT-CHHHHCCTTCE
T ss_pred HHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHCCCEeeCCHHHHHhcCCEEEEECCCHHHHHHHHcch-hHHhhCCCCCE
Confidence 38999999999999999999999999999998899999999999999999999999988999999744 48888899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
|||+||+.|.+.+++.+.+.++|+.|+++|++|++..+..+++++++||+++.+++++++|+.+ ++++++|+.|.|+.+
T Consensus 120 vi~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~i~~gg~~~~~~~~~~ll~~~-~~~~~~g~~g~a~~~ 198 (320)
T 4dll_A 120 FLDMASITPREARDHAARLGALGIAHLDTPVSGGTVGAEQGTLVIMAGGKPADFERSLPLLKVF-GRATHVGPHGSGQLT 198 (320)
T ss_dssp EEECSCCCHHHHHHHHHHHHHTTCEEEECCEECHHHHHHHTCEEEEEESCHHHHHHHHHHHHHH-EEEEEEESTTHHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHhHHhcCCeeEEeCCCHHHHHHHHHHHHhc-CCEEEeCCccHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|.+.+.++.+++|++.++++.|+|++++.++++.+++.||.++.+.+ .+..++|.++|+++++.||+++
T Consensus 199 Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~l~~~~~~gf~~~~~~KDl~~ 271 (320)
T 4dll_A 199 KLANQMIVGITIGAVAEALLFATKGGADMAKVKEAITGGFADSRVLQLHGQ-------RMVERDFAPRARLSIQLKDMRN 271 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHTTSTTCBHHHHTHHH-------HHHTTCCCCSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcccccCHHHHHhhh-------hhccCCCCCcccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999888998766543 2347889999999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
+.+++++.|+++|+.+++.++|+++.+.|+|++||+++++++++.
T Consensus 272 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 316 (320)
T 4dll_A 272 ALATAQEIGFDAPITGLFEQLYAEGVEHGLTDLDQSGLFVELASR 316 (320)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTTTTTSBGGGHHHHHHHC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999864
|
| >3pef_A 6-phosphogluconate dehydrogenase, NAD-binding; gamma-hydroxybutyrate dehydrogenase, succinic semialdehyde R geobacter metallireducens; HET: NAP; 2.07A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-50 Score=347.24 Aligned_cols=276 Identities=28% Similarity=0.407 Sum_probs=260.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+++|.+|+++||+|++|||++++.+.+.+.|+..++++.++++++|+||+|||++.++++++.+.+++.+.+++|++|
T Consensus 12 mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~~~~v 91 (287)
T 3pef_A 12 MGSAMAKNLVKAGCSVTIWNRSPEKAEELAALGAERAATPCEVVESCPVTFAMLADPAAAEEVCFGKHGVLEGIGEGRGY 91 (287)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSGGGGHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCEE
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEcCCHHHHHHHHcCcchHhhcCCCCCEE
Confidence 89999999999999999999999999999999999999999999999999999999889999996555688889999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAK 161 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~K 161 (286)
||+||+.|.+.+++.+.+.++|+.|+++|+++++..+..+++++++||+++.+++++++|+.++.+++++|+.|.++.+|
T Consensus 92 i~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~~~~~K 171 (287)
T 3pef_A 92 VDMSTVDPATSQRIGVAVVAKGGRFLEAPVSGSKKPAEDGTLIILAAGDRNLYDEAMPGFEKMGKKIIHLGDVGKGAEMK 171 (287)
T ss_dssp EECSCCCHHHHHHHHHHHHHTTCEEEECCEECCHHHHHHTCEEEEEEECHHHHHHHHHHHHHHEEEEEECSSTTHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHHHhCCEEEECCCcCCHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhCCCeEEeCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHH
Q psy764 162 LCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLA 241 (286)
Q Consensus 162 l~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~ 241 (286)
+++|++.+.++.+++|++.++++.|+|++++.++++.+++.||.++++.+ .+.+++|.++|+++++.||++++
T Consensus 172 l~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~kd~~~~ 244 (287)
T 3pef_A 172 LVVNMVMGGMMACFCEGLALGEKAGLATDAILDVIGAGAMANPMFALKGG-------LIRDRNFAPAFPLKHMQKDLRLA 244 (287)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHH-------HHHTTCCCCSSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccccHHHHHHhh-------hhhcCCCCCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999888988766543 23478899999999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 242 EDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 242 ~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
.+++++.|+++|+.+.++++|+++.++|+|++|++++++++++
T Consensus 245 ~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 287 (287)
T 3pef_A 245 VALGDRVGQPLVASAAANELFKGARAAGFGDEDFSAIFKTYER 287 (287)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGGCC
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHhC
Confidence 9999999999999999999999999999999999999998763
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-50 Score=350.53 Aligned_cols=278 Identities=24% Similarity=0.366 Sum_probs=257.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-cCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||+++|.+|+++||+|++|||++++.+.+.+.|... +.++.|+++++|+||+|||++++++.++.+.+++.+.++++++
T Consensus 18 mG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~e~~~~aDvvi~~vp~~~~~~~v~~~~~~l~~~l~~g~i 97 (303)
T 3g0o_A 18 MGMGAARSCLRAGLSTWGADLNPQACANLLAEGACGAAASAREFAGVVDALVILVVNAAQVRQVLFGEDGVAHLMKPGSA 97 (303)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSEEESSSTTTTTTCSEEEECCSSHHHHHHHHC--CCCGGGSCTTCE
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccCCHHHHHhcCCEEEEECCCHHHHHHHHhChhhHHhhCCCCCE
Confidence 899999999999999999999999999999989887 8899999999999999999988999998655568888999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCC-cchHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGD-SGNGQV 159 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~-~g~a~~ 159 (286)
|||+||+.|.+.+++.+.+.++|+.|+++|+++++..+..|++.+++||+++.+++++++|+.++++++++|+ .|.++.
T Consensus 98 vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~~~~~g~a~~ 177 (303)
T 3g0o_A 98 VMVSSTISSADAQEIAAALTALNLNMLDAPVSGGAVKAAQGEMTVMASGSEAAFTRLKPVLDAVASNVYRISDTPGAGST 177 (303)
T ss_dssp EEECSCCCHHHHHHHHHHHHTTTCEEEECCEESCHHHHHTTCEEEEEECCHHHHHHHHHHHHHHEEEEEEEESSTTHHHH
T ss_pred EEecCCCCHHHHHHHHHHHHHcCCeEEeCCCCCChhhhhcCCeEEEeCCCHHHHHHHHHHHHHHCCCEEECCCCCcHHHH
Confidence 9999999999999999999889999999999999999999999999999999999999999999999999998 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHH
Q psy764 160 AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMK 239 (286)
Q Consensus 160 ~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~ 239 (286)
+|+++|.+.+.++.+++|++.++++.|+|++++.++++.+++.||.++++.+ .+..++|.++|+++++.||++
T Consensus 178 ~Kl~~N~~~~~~~~~~~Ea~~l~~~~G~d~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~kD~~ 250 (303)
T 3g0o_A 178 VKIIHQLLAGVHIAAAAEAMALAARAGIPLDVMYDVVTHAAGNSWMFENRMQ-------HVVDGDYTPRSAVDIFVKDLG 250 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHH-------HHHTTCCCCSSBHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhcccCCHHHHhhhH-------HHhcCCCCCCCchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998776543 223688899999999999999
Q ss_pred HHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhcC
Q psy764 240 LAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNKT 286 (286)
Q Consensus 240 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 286 (286)
++.+++++.|+++|+.+.++++|+++.+.|+|++||+++++++++++
T Consensus 251 ~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~~ 297 (303)
T 3g0o_A 251 LVADTAKALRFPLPLASTALNMFTSASNAGYGKEDDSAVIKIFSGEG 297 (303)
T ss_dssp HHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGC----
T ss_pred HHHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999988753
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-46 Score=323.49 Aligned_cols=259 Identities=27% Similarity=0.357 Sum_probs=240.7
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||+++|++|+++||+|++|||++++.+.+.+.|++.+++++++++ +|+||+|||++.++++++. ++.+.++++++
T Consensus 25 ~mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~~~~~-aDvvi~~vp~~~~~~~v~~---~l~~~l~~g~i 100 (296)
T 3qha_A 25 NMGAPMATRMTEWPGGVTVYDIRIEAMTPLAEAGATLADSVADVAA-ADLIHITVLDDAQVREVVG---ELAGHAKPGTV 100 (296)
T ss_dssp TTHHHHHHHHTTSTTCEEEECSSTTTSHHHHHTTCEECSSHHHHTT-SSEEEECCSSHHHHHHHHH---HHHTTCCTTCE
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCEEcCCHHHHHh-CCEEEEECCChHHHHHHHH---HHHHhcCCCCE
Confidence 3899999999999999999999999999999999999999999999 9999999999889999985 48888899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
|||+||+.|.+.+++.+.+.++|++|+++|+++++..+..+++++++||+++.+++++++|+.++++++++|+.|.|+.+
T Consensus 101 vv~~st~~~~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~~~~~g~~g~a~~~ 180 (296)
T 3qha_A 101 IAIHSTISDTTAVELARDLKARDIHIVDAPVSGGAAAAARGELATMVGADREVYERIKPAFKHWAAVVIHAGEPGAGTRM 180 (296)
T ss_dssp EEECSCCCHHHHHHHHHHHGGGTCEEEECCEESCHHHHHHTCEEEEEECCHHHHHHHHHHHHHHEEEEEEEESTTHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHHHHcCCEEEeCCCcCCHHHHhcCCccEEecCCHHHHHHHHHHHHHHcCCeEEcCChhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHH------HHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccc---
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLL------SDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKI--- 231 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~--- 231 (286)
|+++|.+.+.++.+++|++.++++.|+|++++ .++++.+++.||..+ . +.+ .++ |.|+|++
T Consensus 181 Kl~~N~~~~~~~~~~~E~~~l~~~~G~d~~~~~~~~~~~~~i~~~~~~s~~~~--~--~~~-----~~~-~~~~f~~~~~ 250 (296)
T 3qha_A 181 KLARNMLTFTSYAAACEAMKLAEAAGLDLQALGRVVRHTDALTGGPGAIMVRD--N--MKD-----LEP-DNFLYQPFLH 250 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHCCGGGGCCCS--S--CSC-----CCT-TSTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhhhcchHHHHhcCcccCHHhh--c--hhh-----hhc-CCCCCchhhh
Confidence 99999999999999999999999999999999 999999888887654 2 222 355 8899999
Q ss_pred --hhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCC
Q psy764 232 --SLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDK 273 (286)
Q Consensus 232 --~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~ 273 (286)
+++.||++++.+++++.|+++|+++.++++|+.+.+.|++++
T Consensus 251 ~~~~~~KD~~~~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~ 294 (296)
T 3qha_A 251 TRGLGEKDLSLALALGEAVSVDLPLARLAYEGLAAGLGVPHKEK 294 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTCCC---
T ss_pred hhHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHhcCcccc
Confidence 999999999999999999999999999999999999999654
|
| >3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=332.69 Aligned_cols=271 Identities=14% Similarity=0.171 Sum_probs=245.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+++|++|+++||+|++|||++++.+.+.+.|+..+.++.++++++|+||+|||++.++++++. .+++. .+.+|++|
T Consensus 20 mG~~~A~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~~v~~-~~~l~-~~~~g~iv 97 (306)
T 3l6d_A 20 MGTIMAQVLLKQGKRVAIWNRSPGKAAALVAAGAHLCESVKAALSASPATIFVLLDNHATHEVLG-MPGVA-RALAHRTI 97 (306)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTCEECSSHHHHHHHSSEEEECCSSHHHHHHHHT-STTHH-HHTTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhcCCEEEEEeCCHHHHHHHhc-ccchh-hccCCCEE
Confidence 89999999999999999999999999999988999999999999999999999999888999985 23453 45799999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEec--CC-cchHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHC--GD-SGNGQ 158 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~--g~-~g~a~ 158 (286)
||+||+.|.+.+++.+.+.++|++|+++|++|+++.+..+.+++++||+++.+++++++|+.++.+++++ |+ .|+|+
T Consensus 98 id~st~~~~~~~~l~~~~~~~g~~~vdapv~g~~~~~~~~~~~i~~gg~~~~~~~~~~ll~~lg~~~~~~~~g~~~g~g~ 177 (306)
T 3l6d_A 98 VDYTTNAQDEGLALQGLVNQAGGHYVKGMIVAYPRNVGHRESHSIHTGDREAFEQHRALLEGLAGHTVFLPWDEALAFAT 177 (306)
T ss_dssp EECCCCCTTHHHHHHHHHHHTTCEEEEEEEESCGGGTTCTTCEEEEEECHHHHHHHHHHHHTTCSEEEECCHHHHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHcCCeEEecccccCcccccCCceEEEEcCCHHHHHHHHHHHHHhcCCEEEecCCCCccHHH
Confidence 9999999999999999999999999999999999888887889999999999999999999998899999 86 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC--CCcccccccCCCCCccccCCCCCCCCCC-ccchhHH
Q psy764 159 VAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS--GRCWSSEVYNPVPGVLSNVPASNNYNGG-FKISLLA 235 (286)
Q Consensus 159 ~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~~-f~~~~~~ 235 (286)
.+| .+.+.++.+++|++.++++.|+|++++.++++.+. +.||.++.+.| .+.+++|.|+ |+++++.
T Consensus 178 ~~k----~~~~~~~~~~~Ea~~la~~~Gld~~~~~~~~~~~~~~~~s~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 246 (306)
T 3l6d_A 178 VLH----AHAFAAMVTFFEAVGAGDRFGLPVSKTARLLLETSRFFVADALEEAVR-------RLETQDFKGDQARLDVHA 246 (306)
T ss_dssp HHH----HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHTCCCTTSSBHHHHH
T ss_pred HHH----HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhhhcccHHHHHHHH-------HHhcCCCCCCcccHHHHH
Confidence 999 45667899999999999999999999999999875 67887766543 2347888875 7999999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 236 KDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 236 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
||++++.+++++.|+++|+++++.++|+++.+.|+|++||+++++++++.
T Consensus 247 KDl~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~a~~~~~~~~ 296 (306)
T 3l6d_A 247 DAFAHIAQSLHAQGVWTPVFDAVCQVVQRAAAMGYGDQDIAATTKSFARE 296 (306)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTTTTSBGGGGGGGGC--
T ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhH
Confidence 99999999999999999999999999999999999999999999998753
|
| >2gf2_A Hibadh, 3-hydroxyisobutyrate dehydrogenase; structural genomics, structural genomics consortium, SGC, oxidoreductase; 2.38A {Homo sapiens} PDB: 2i9p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=307.89 Aligned_cols=285 Identities=46% Similarity=0.808 Sum_probs=259.4
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||++++.+|.++|++|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|.+.+++.++....++.+.++++++
T Consensus 10 ~mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~~vp~~~~~~~v~~~~~~~~~~l~~~~~ 89 (296)
T 2gf2_A 10 NMGNPMAKNLMKHGYPLIIYDVFPDACKEFQDAGEQVVSSPADVAEKADRIITMLPTSINAIEAYSGANGILKKVKKGSL 89 (296)
T ss_dssp TTHHHHHHHHHHTTCCEEEECSSTHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTSGGGTCCTTCE
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeecCCHHHHHhcCCEEEEeCCCHHHHHHHHhCchhHHhcCCCCCE
Confidence 38999999999999999999999999999988898888999999999999999999888999998764456667789999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
||++|++.+.+.+++.+.+.+++..|+++|+++++..+..+.+.+++|++++.+++++++|+.+|.+++++++.|.+..+
T Consensus 90 vv~~s~~~~~~~~~~~~~~~~~g~~~~~~p~~~g~~~a~~~~~~~~~~~~~~~~~~v~~l~~~~g~~~~~~~~~g~~~~~ 169 (296)
T 2gf2_A 90 LIDSSTIDPAVSKELAKEVEKMGAVFMDAPVSGGVGAARSGNLTFMVGGVEDEFAAAQELLGCMGSNVVYCGAVGTGQAA 169 (296)
T ss_dssp EEECSCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCGGGHHHHHHHHTTTEEEEEEEESTTHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCEEEEcCCCCChhHHhcCcEEEEeCCCHHHHHHHHHHHHHHcCCeEEeCCccHHHHH
Confidence 99999999999988888887788899999999999888899989999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|.+.+.++.++.|++.++++.|++++++.+++..+.+.+|.+....+.|.++...+..++|.++|.++.+.||+++
T Consensus 170 kl~~n~~~~~~~~~~~Ea~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s~~~~~~~~g~~~~~~~kd~~~ 249 (296)
T 2gf2_A 170 KICNNMLLAISMIGTAEAMNLGIRLGLDPKLLAKILNMSSGRCWSSDTYNPVPGVMDGVPSANNYQGGFGTTLMAKDLGL 249 (296)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHSCSSTTTCSSSGGGGTTCSSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhCcccCHHHHhcCCcccccccchhccCCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999998877888776665666665544556788889999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
+.++++++|+++|+.+.++++|+.+.+.|+|++||+++++++++.
T Consensus 250 ~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~~ 294 (296)
T 2gf2_A 250 AQDSATSTKSPILLGSLAHQIYRMMCAKGYSKKDFSSVFQFLREE 294 (296)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHTTTCTTSBGGGHHHHHSCC
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999998753
|
| >1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-42 Score=299.28 Aligned_cols=277 Identities=31% Similarity=0.487 Sum_probs=251.9
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||+.++.+|.++|++|.+|||++++.+.+.+.|+....++.++++++|+||+|+|++.+++.++.+.+++.+.++++++
T Consensus 15 ~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~v~~~~~~~~~~~~~~~l~~~l~~~~~ 94 (299)
T 1vpd_A 15 IMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTV 94 (299)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCE
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHhCcchHhhcCCCCCE
Confidence 38999999999999999999999999999988899888999999999999999999888899998543357778889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
||++|+..|.+.+++.+.+.++|+.|+++|++++++.+..+.+.+++||+++.+++++++|+.+|.+++++++.|++..+
T Consensus 95 vv~~s~~~~~~~~~l~~~~~~~g~~~~~~pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~ 174 (299)
T 1vpd_A 95 LIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTGDIGAGNVT 174 (299)
T ss_dssp EEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEEESTTHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCeEEEecCCCCHhHHhcCCEEEEeCCCHHHHHHHHHHHHHHcCCeEEeCCcCHHHHH
Confidence 99999999988899999888889999999999999988888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|.+.+.++.++.|++.++++.|++++++.+++..+...+|.+....| . +..++|.++|+++...||++.
T Consensus 175 Kl~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~--~-----~l~~~~~~g~~~~~~~kd~~~ 247 (299)
T 1vpd_A 175 KLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP--M-----VMDRNFKPGFRIDLHIKDLAN 247 (299)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHH--H-----HHTTCCCCSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCCHHHHHhhh--H-----hhcCCCCCCCChHHHHHHHHH
Confidence 999999999999999999999999999999999999988776765543222 2 235677889999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
+.++++++|+++|+.+.++++|+++.+.|+|++||+++++++++
T Consensus 248 ~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (299)
T 1vpd_A 248 ALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEK 291 (299)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875
|
| >3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-41 Score=291.73 Aligned_cols=278 Identities=31% Similarity=0.526 Sum_probs=251.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||+.++.+|.+.|++|++|||++++.+.+.+.|+..+.++.++++++|+||+|+|.+.+++.++.+.+++.+.++++++
T Consensus 14 ~~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~ 93 (301)
T 3cky_A 14 AMGKPMAINLLKEGVTVYAFDLMEANVAAVVAQGAQACENNQKVAAASDIIFTSLPNAGIVETVMNGPGGVLSACKAGTV 93 (301)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSSHHHHHHHHTTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHSCTTCE
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHCCCeecCCHHHHHhCCCEEEEECCCHHHHHHHHcCcchHhhcCCCCCE
Confidence 38999999999999999999999999999888898888999999999999999999988899998643347778889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
||++++..|...+++.+.+.+++++|+++|+++++..+..|.++++++|+++.+++++++|+.+|.+++++++.|.+..+
T Consensus 94 vv~~~~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~~~~g~~~~~ 173 (301)
T 3cky_A 94 IVDMSSVSPSSTLKMAKVAAEKGIDYVDAPVSGGTKGAEAGTLTIMVGASEAVFEKIQPVLSVIGKDIYHVGDTGAGDAV 173 (301)
T ss_dssp EEECCCCCHHHHHHHHHHHHHTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHH
Confidence 99999999988899998888889999999999999888889888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|.+.+.++.++.|++.++++.|++++++.+++..+...++.+....+. . +..++|.++|+++.+.||+..
T Consensus 174 Kl~~N~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~l~~~~~~g~~~~~~~kd~~~ 247 (301)
T 3cky_A 174 KIVNNLLLGCNMASLAEALVLGVKCGLKPETMQEIIGKSSGRSYAMEAKMEK-F-----IMSGDFAGGFAMDLQHKDLGL 247 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCBHHHHHHCCC-C-----CCTCCCSSSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhhh-h-----hhcCCCCCCccHHHHHHHHHH
Confidence 9999999999999999999999999999999999999877666655433220 1 236778889999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
+.++++++|+++|+.++++++|+++.+.|+|++||+++++++++
T Consensus 248 ~~~~a~~~gv~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 291 (301)
T 3cky_A 248 ALEAGKEGNVPLPMTAMATQIFEGGRAMGLGREDMSAVIKVWEQ 291 (301)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred HHHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875
|
| >4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-42 Score=302.19 Aligned_cols=262 Identities=15% Similarity=0.199 Sum_probs=226.4
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCc-------hHHHHHHHcCCcccC-CHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNT-------DASQTLAKEGANMAL-SLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~-------~~~~~l~~~g~~~~~-s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
||+++|.+|+++| |+|++|||++ ++.+.+.+.|+ +. ++.+++++||+||+|||++...+.+ . ++.
T Consensus 35 mG~~lA~~L~~~G~~~V~~~dr~~~~~~~~~~~~~~~~~~g~--~~~s~~e~~~~aDvVi~avp~~~~~~~~-~---~i~ 108 (317)
T 4ezb_A 35 AAQSIAGGLGGRNAARLAAYDLRFNDPAASGALRARAAELGV--EPLDDVAGIACADVVLSLVVGAATKAVA-A---SAA 108 (317)
T ss_dssp HHHHHHHHHHTTTCSEEEEECGGGGCTTTHHHHHHHHHHTTC--EEESSGGGGGGCSEEEECCCGGGHHHHH-H---HHG
T ss_pred HHHHHHHHHHHcCCCeEEEEeCCCccccchHHHHHHHHHCCC--CCCCHHHHHhcCCEEEEecCCHHHHHHH-H---HHH
Confidence 8999999999999 9999999998 56666767787 66 8999999999999999987665554 3 488
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecC
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
+.++++++|||+||+.|.+.+++.+.+.++|+.|+++|++|+ ..+..+++++++||+++ ++++++|+.++++++++|
T Consensus 109 ~~l~~~~ivv~~st~~p~~~~~~~~~l~~~g~~~~d~pv~g~-~~a~~g~l~i~vgg~~~--~~~~~ll~~~g~~v~~~g 185 (317)
T 4ezb_A 109 PHLSDEAVFIDLNSVGPDTKALAAGAIATGKGSFVEGAVMAR-VPPYAEKVPILVAGRRA--VEVAERLNALGMNLEAVG 185 (317)
T ss_dssp GGCCTTCEEEECCSCCHHHHHHHHHHHHTSSCEEEEEEECSC-STTTGGGSEEEEESTTH--HHHHHHHHTTTCEEEEEE
T ss_pred hhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeccCCCC-chhhcCCEEEEEeCChH--HHHHHHHHHhCCCeEEeC
Confidence 888999999999999999999999999999999999999995 45667888999999987 899999999999999999
Q ss_pred C-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCCCCCCcc
Q psy764 153 D-SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNGGFK 230 (286)
Q Consensus 153 ~-~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~ 230 (286)
+ +|+|+.+|+++|.+.++++++++|++.++++.|+|++ +++.+..+. +.+|. .+.+ .+.+++|.++|+
T Consensus 186 ~~~g~a~~~Kl~~N~~~~~~~~~~~E~~~la~~~Gid~~-~~~~l~~~~~~~~~~--~~~~-------~~~~~~~~~g~~ 255 (317)
T 4ezb_A 186 ETPGQASSLKMIRSVMIKGVEALLIEALSSAERAGVTER-ILDSVQETFPGLDWR--DVAD-------YYLSRTFEHGAR 255 (317)
T ss_dssp SSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHHHSTTSCHH--HHHH-------HHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH-HHHHHHhcCccccHH--Hhhh-------hhhcCCCCCCcc
Confidence 8 8999999999999999999999999999999999996 555555443 33442 2211 223667777776
Q ss_pred chhHHHHHHHHHHHHhhcCCCchHHHHHHHH----HHHHHHcCCC-CCchhHHHHHHhhc
Q psy764 231 ISLLAKDMKLAEDLANRCTAQTDLSKLATSI----YKRLMDKGCQ-DKDFSYIYEFLKNK 285 (286)
Q Consensus 231 ~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~----~~~a~~~g~g-~~d~~~~~~~~~~~ 285 (286)
+.||++++.+++++.|+++|+++++.++ |+.+.+.|++ ++||+++++.++++
T Consensus 256 ---~~KDl~~~~~~a~~~g~~~pl~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~~~ 312 (317)
T 4ezb_A 256 ---RVTEMTEAAETIESFGLNAPMSRAACETIAAAHAAMKDQGLSVNDGYRGFVPVLARR 312 (317)
T ss_dssp ---HHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHTTSSCCTTSHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHHhh
Confidence 4999999999999999999999999999 8888889997 99999999998653
|
| >1yb4_A Tartronic semialdehyde reductase; structural genomics, oxidoreductase, salmonella typhimurium LT2, PSI, protein ST initiative; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-41 Score=291.02 Aligned_cols=276 Identities=25% Similarity=0.390 Sum_probs=250.0
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||+.++.+|.+.||+|++|| ++++.+.+.+.|+..+.++.++++++|+||+|+|++.+++.++.+.+++.+.+.++++
T Consensus 13 ~~G~~~a~~l~~~g~~V~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~D~vi~~vp~~~~~~~v~~~~~~l~~~l~~~~~ 91 (295)
T 1yb4_A 13 IMGSPMAINLARAGHQLHVTT-IGPVADELLSLGAVNVETARQVTEFADIIFIMVPDTPQVEDVLFGEHGCAKTSLQGKT 91 (295)
T ss_dssp TTHHHHHHHHHHTTCEEEECC-SSCCCHHHHTTTCBCCSSHHHHHHTCSEEEECCSSHHHHHHHHHSTTSSTTSCCTTEE
T ss_pred HHHHHHHHHHHhCCCEEEEEc-CHHHHHHHHHcCCcccCCHHHHHhcCCEEEEECCCHHHHHHHHhCchhHhhcCCCCCE
Confidence 389999999999999999999 9999998888888888999999999999999999988899998744447778889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
||++|+..|...+++.+.+.+++++|+++|+++++..+..+.+++++|++++.+++++++|+.+|.+++++++.|.+..+
T Consensus 92 vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~a~~g~~~~~~~~~~~~~~~~~~ll~~~g~~~~~~~~~~~~~~~ 171 (295)
T 1yb4_A 92 IVDMSSISPIETKRFAQRVNEMGADYLDAPVSGGEIGAREGTLSIMVGGEQKVFDRVKPLFDILGKNITLVGGNGDGQTC 171 (295)
T ss_dssp EEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEEESTTHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCeEEEccCCCCHHHHHcCCeEEEECCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHH
Confidence 99999999998999998888889999999999999888888888999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|.+.+.++.++.|++.++++.|++++++.+++..+...+|.+.... ..+..+++.++|++..+.||+.+
T Consensus 172 Kl~~n~~~~~~~~~~~E~~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~-------~~~~~~~~~~g~~~~~~~kd~~~ 244 (295)
T 1yb4_A 172 KVANQIIVALNIEAVSEALVFASKAGADPVRVRQALMGGFASSRILEVHG-------ERMINRTFEPGFKIALHQKDLNL 244 (295)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTSSSSCBHHHHHHH-------HHHHTTCCCCSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhh-------HHHhcCCCCCCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999988876666543221 12235778899999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
+.+++++.|+++|+.++++++|+++.+.|+|++||+++++++++
T Consensus 245 ~~~~a~~~g~~~p~~~~~~~~~~~~~~~g~~~~d~~~~~~~~~~ 288 (295)
T 1yb4_A 245 ALQSAKALALNLPNTATCQELFNTCAANGGSQLDHSAMVQALEL 288 (295)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875
|
| >2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-40 Score=290.69 Aligned_cols=275 Identities=24% Similarity=0.383 Sum_probs=249.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.++.+|.+.|++|++|||++++.+.+.+.|+....++.++++++|+||+|+|++.++++++....++.+.+.++++|
T Consensus 41 mG~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~DvVi~av~~~~~~~~v~~~~~~~~~~l~~~~~v 120 (316)
T 2uyy_A 41 MGSGIVSNLLKMGHTVTVWNRTAEKCDLFIQEGARLGRTPAEVVSTCDITFACVSDPKAAKDLVLGPSGVLQGIRPGKCY 120 (316)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSGGGGHHHHHTTCEECSCHHHHHHHCSEEEECCSSHHHHHHHHHSTTCGGGGCCTTCEE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHcCCEEcCCHHHHHhcCCEEEEeCCCHHHHHHHHcCchhHhhcCCCCCEE
Confidence 79999999999999999999999999999888988888999999999999999998889999987644456778899999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAK 161 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~K 161 (286)
|++|++.|...+++.+.+..++..|+++|+++++.....+.+.++++|+++.+++++++|+.+|.+++++++.+.+...|
T Consensus 121 v~~s~~~~~~~~~l~~~~~~~~~~~v~~p~~g~~~~~~~g~~~~~~~g~~~~~~~v~~ll~~~g~~~~~~~~~~~~~~~K 200 (316)
T 2uyy_A 121 VDMSTVDADTVTELAQVIVSRGGRFLEAPVSGNQQLSNDGMLVILAAGDRGLYEDCSSCFQAMGKTSFFLGEVGNAAKMM 200 (316)
T ss_dssp EECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEEECHHHHHHTHHHHHHHEEEEEECSSTTHHHHHH
T ss_pred EECCCCCHHHHHHHHHHHHHcCCEEEEcCccCChhHHhhCCEEEEeCCCHHHHHHHHHHHHHhcCCEEEeCCCCHHHHHH
Confidence 99999999999999988877889999999999999888998888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHH
Q psy764 162 LCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLA 241 (286)
Q Consensus 162 l~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~ 241 (286)
++.|.+...++.++.|++.++++.|++++++.+++..+...++.+....+ .+ ..++|.++|+++.+.||+.++
T Consensus 201 ~~~n~~~~~~~~~~~Ea~~la~~~G~~~~~~~~~~~~~~~~s~~~~~~~~--~~-----l~~~~~~g~~~~~~~kd~~~~ 273 (316)
T 2uyy_A 201 LIVNMVQGSFMATIAEGLTLAQVTGQSQQTLLDILNQGQLASIFLDQKCQ--NI-----LQGNFKPDFYLKYIQKDLRLA 273 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHSTTCCHHHHHHHH--HH-----HHTCCCCSSBHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcCCCCCHHHHHhhH--Hh-----hcCCCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999988776765543322 12 256688899999999999999
Q ss_pred HHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHh
Q psy764 242 EDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 242 ~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
.+++++.|+++|+.++++++|+++.+.|+|++||++++++++
T Consensus 274 ~~~a~~~gv~~p~~~~v~~~~~~a~~~g~g~~d~~~~~~~~~ 315 (316)
T 2uyy_A 274 IALGDAVNHPTPMAAAANEVYKRAKALDQSDNDMSAVYRAYI 315 (316)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGGGGTC
T ss_pred HHHHHHhCCCChHHHHHHHHHHHHHhcCCCccCHHHHHHHHh
Confidence 999999999999999999999999999999999999998765
|
| >2cvz_A Dehydrogenase, 3-hydroxyisobutyrate dehydrogenase; valine catabolism, NADP+, structural GEN riken structural genomics/proteomics initiative; HET: NDP; 1.80A {Thermus thermophilus} SCOP: a.100.1.1 c.2.1.6 PDB: 1wp4_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-40 Score=283.65 Aligned_cols=272 Identities=28% Similarity=0.420 Sum_probs=243.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||+.++.+|.+ |++|++|||++++.+.+.+.|+..++ +.++++++|+||+|+|++..++.++.+ +.+.++++++
T Consensus 11 ~~G~~~a~~l~~-g~~V~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~D~vi~~v~~~~~~~~v~~~---l~~~l~~~~~ 85 (289)
T 2cvz_A 11 AMGYPMAGHLAR-RFPTLVWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVAEA---LYPYLREGTY 85 (289)
T ss_dssp TTHHHHHHHHHT-TSCEEEECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHHH---HTTTCCTTEE
T ss_pred HHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHCCCcccC-HHHHHhCCCEEEEeCCChHHHHHHHHH---HHhhCCCCCE
Confidence 389999999999 99999999999999988877877776 888889999999999988778888853 6777889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~ 160 (286)
||++|+..+...+++.+.+.+++..|+++|+++++..+..+.+++++|++++.+++++++| .+|.+++++++.+.+..+
T Consensus 86 vv~~s~~~~~~~~~l~~~~~~~g~~~~~~p~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ll-~~g~~~~~~~~~~~~~~~ 164 (289)
T 2cvz_A 86 WVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGPVGAGHAV 164 (289)
T ss_dssp EEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEEESTTHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCEEEEecCCCChhHHhhCCeEEEECCCHHHHHHHHHHH-hhcCCeEEcCCCcHHHHH
Confidence 9999999999999999888888889999999999988888988889999999999999999 999988999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHH
Q psy764 161 KLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKL 240 (286)
Q Consensus 161 Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~ 240 (286)
|+++|.+.+.++.++.|++.++++.|++++++.+++..+...++.++.+.+. .+..++++++|+++.+.||+..
T Consensus 165 k~~~n~~~~~~~~~~~Ea~~l~~~~G~~~~~~~~~~~~~~~~s~~~~~~~~~------~~l~~~~~~g~~~~~~~kd~~~ 238 (289)
T 2cvz_A 165 KAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQ------RVLTRAFPKTFALGLLVKDLGI 238 (289)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHHH------HTTTSCCCCSSBHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHHHccCCCCHHHHHhccc------hhhcCCCCCCcChHHHHHHHHH
Confidence 9999999999999999999999999999999999998877666554332110 1236777889999999999999
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
+.+++++.|+++|+.++++++++++.+.|+|++||+++++++++
T Consensus 239 ~~~~a~~~gv~~p~~~~v~~~~~~a~~~g~~~~d~~~~~~~~~~ 282 (289)
T 2cvz_A 239 AMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLER 282 (289)
T ss_dssp HHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHH
T ss_pred HHHHHHHcCCCChHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999875
|
| >3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-40 Score=291.23 Aligned_cols=252 Identities=14% Similarity=0.156 Sum_probs=222.5
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCC--chHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKN--TDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~--~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||+++|++|+++|| +|++|||+ +++.+.+.+.|+..++++.+++++||+||+|||++...+ ++. ++.+.++++
T Consensus 35 mG~~~A~~L~~~G~~~V~~~dr~~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVi~~vp~~~~~~-~~~---~l~~~l~~~ 110 (312)
T 3qsg_A 35 AASAIASGLRQAGAIDMAAYDAASAESWRPRAEELGVSCKASVAEVAGECDVIFSLVTAQAALE-VAQ---QAGPHLCEG 110 (312)
T ss_dssp HHHHHHHHHHHHSCCEEEEECSSCHHHHHHHHHHTTCEECSCHHHHHHHCSEEEECSCTTTHHH-HHH---HHGGGCCTT
T ss_pred HHHHHHHHHHHCCCCeEEEEcCCCCHHHHHHHHHCCCEEeCCHHHHHhcCCEEEEecCchhHHH-HHH---hhHhhcCCC
Confidence 89999999999999 99999997 588888888899999999999999999999999876554 554 488888999
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhc--CCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCC-cc
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREK--QITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGD-SG 155 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~--g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~-~g 155 (286)
++|||+||+.|.+.+++.+.+.++ |++|+++|++|++..+ .+.+++++||+++ ++++++|+.+|.+++++|+ +|
T Consensus 111 ~ivvd~st~~~~~~~~~~~~~~~~~~g~~~vd~pv~g~~~~~-~g~l~i~vgg~~~--~~~~~ll~~~g~~~~~~g~~~g 187 (312)
T 3qsg_A 111 ALYADFTSCSPAVKRAIGDVISRHRPSAQYAAVAVMSAVKPH-GHRVPLVVDGDGA--RRFQAAFTLYGCRIEVLDGEVG 187 (312)
T ss_dssp CEEEECCCCCHHHHHHHHHHHHHHCTTCEEEEEEECSCSTTT-GGGSEEEEESTTH--HHHHHHHHTTTCEEEECCSSTT
T ss_pred CEEEEcCCCCHHHHHHHHHHHHhhcCCCeEEeccccCCchhh-cCCEEEEecCChH--HHHHHHHHHhCCCeEEcCCCCC
Confidence 999999999999999999999888 9999999999976554 7788999999988 8999999999999999998 89
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHH
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLA 235 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 235 (286)
+|+.+|+++|.+.+.++.+++|++.++++.|+|+ ++++.++.+.+ ++.++.+.+ .+.+++|.++|++ .
T Consensus 188 ~a~~~Kl~~n~~~~~~~~~~~Ea~~la~~~Gld~-~~~~~l~~~~~-~~~~~~~~~-------~~~~~~~~~g~~~---~ 255 (312)
T 3qsg_A 188 GAALLKMCRSAVLKGLEALFLEALAAAEKMGLAD-RVLASLDASFP-EHHLRDLAL-------YLVERNLEHADRR---A 255 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHH-HHHHHHHHHSG-GGTHHHHHH-------HHHHHHHHHHHHH---H
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-HHHHHHHhcCC-chhHHHhhh-------HhhcCCCCcccch---H
Confidence 9999999999999999999999999999999999 57788877653 443333222 2346778788875 7
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCC
Q psy764 236 KDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQD 272 (286)
Q Consensus 236 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~ 272 (286)
||++++.+++++.|+++|+++++.++|+++.+.|+++
T Consensus 256 KDl~~~~~~a~~~g~~~pl~~~~~~~~~~~~~~g~~~ 292 (312)
T 3qsg_A 256 HELGEVAATLCSVGVEPLVAEAGYRRLTRVAQVRAAL 292 (312)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhcCCcc
Confidence 9999999999999999999999999999999998876
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=281.28 Aligned_cols=264 Identities=22% Similarity=0.333 Sum_probs=227.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcC---cEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGA---EFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~a---divi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||+++|.+|+++||+|++|||++++++.+.+.|+..+.+++++++++ |+||+|||++ ++++++.+ +.+.+++|
T Consensus 33 mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~~a~~~DvVi~~vp~~-~v~~vl~~---l~~~l~~g 108 (358)
T 4e21_A 33 MGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCAKLVKPRVVWLMVPAA-VVDSMLQR---MTPLLAAN 108 (358)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHHHSCSSCEEEECSCGG-GHHHHHHH---HGGGCCTT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHhcCCCCCEEEEeCCHH-HHHHHHHH---HHhhCCCC
Confidence 89999999999999999999999999999999999999999999999 9999999987 89999864 88889999
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhc-------------
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMG------------- 145 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g------------- 145 (286)
++|||+||+.|.+++++.+.+.++|+.|+++||+|++..+..|. ++|+||+++++++++++|+.++
T Consensus 109 ~iiId~st~~~~~~~~~~~~l~~~g~~~vdapVsGg~~~a~~G~-~im~GG~~~a~~~~~~ll~~lg~~~~~~~~~~~~~ 187 (358)
T 4e21_A 109 DIVIDGGNSHYQDDIRRADQMRAQGITYVDVGTSGGIFGLERGY-CLMIGGEKQAVERLDPVFRTLAPGIGAAPRTPGRE 187 (358)
T ss_dssp CEEEECSSCCHHHHHHHHHHHHTTTCEEEEEEEECGGGHHHHCC-EEEEESCHHHHHHTHHHHHHHSCCGGGSCCCTTGG
T ss_pred CEEEeCCCCChHHHHHHHHHHHHCCCEEEeCCCCCCHHHHhcCC-eeeecCCHHHHHHHHHHHHHhccccccCccccccc
Confidence 99999999999999999999999999999999999999999998 9999999999999999999999
Q ss_pred -------CCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------------------------CCCHHHHHH
Q psy764 146 -------RNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKL------------------------GMNAKLLSD 194 (286)
Q Consensus 146 -------~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------------------------Gl~~~~~~~ 194 (286)
.+++|+|+.|+|+.+|+++|.+.+..+.+++|++.++++. |+|.+++.+
T Consensus 188 ~~~~~~~~~~~~~G~~G~g~~~Kl~~n~l~~~~i~~~aE~~~la~~a~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~ 267 (358)
T 4e21_A 188 KREGTAELGYLHCGPSGAGHFVKMVHNGIEYGLMAAYAEGLNILHHANAGKEGQGADAETAPLRNPDFYRYDLDLADITE 267 (358)
T ss_dssp GCCSSGGGTEEEEESTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCC--------------CGGGCCCCCCHHHHHH
T ss_pred ccccccccceEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchhcccCCCHHHHHH
Confidence 5789999999999999999999999999999999999998 899999999
Q ss_pred HHHccC-CCcccccccCCCCCccccCCCCCCCCCCc-cchhHHHH---HHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 195 VINTSS-GRCWSSEVYNPVPGVLSNVPASNNYNGGF-KISLLAKD---MKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 195 ~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~kd---~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
+++.++ ..||+++.... .+. ++ |.+ .+....|| .+++.+.|.+.|+|+|++.++ +|.+..+
T Consensus 268 ~~~~g~~~~s~~l~~~~~---~~~-----~~--p~~~~~~~~~~d~g~~r~~~~~A~~~gvp~p~~~~a--l~~~~~s-- 333 (358)
T 4e21_A 268 VWRRGSVISSWLLDLSAT---ALL-----DS--PDLQEFQGRVSDSGEGRWTVAAAIDEGVPAHVLSSA--LYERFSS-- 333 (358)
T ss_dssp HHTTTSTTCBHHHHHHHH---HHH-----HC--TTCTTC--CCCCCSHHHHHHHHHHHHTCCCHHHHHH--HHHHHHH--
T ss_pred HHhCccHHHHHHHHHHHH---HHh-----hC--CChHHHHHHHHhcCcHHHHHHHHHHcCCChHHHHHH--HHHHHHH--
Confidence 999886 78998876432 111 11 111 11222233 478999999999999999875 4444444
Q ss_pred CCCCchhH-HHHHHhh
Q psy764 270 CQDKDFSY-IYEFLKN 284 (286)
Q Consensus 270 ~g~~d~~~-~~~~~~~ 284 (286)
.++.+++. +++.+++
T Consensus 334 ~~~~~~~~~l~~a~r~ 349 (358)
T 4e21_A 334 RGEDDFANRLLSAMRY 349 (358)
T ss_dssp TTTTHHHHHHHHHHC-
T ss_pred CCCcccHHHHHHHHHH
Confidence 35667654 8877764
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-38 Score=287.25 Aligned_cols=253 Identities=19% Similarity=0.241 Sum_probs=217.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC-----CcccCCHHHHhh---cCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG-----ANMALSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g-----~~~~~s~~e~~~---~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||++||.+|+++||+|++|||++++++.+.+.+ +..+.+++|+++ ++|+||+|||+++.+++++.+ +.+
T Consensus 15 MG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~g~~g~~i~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~---l~~ 91 (484)
T 4gwg_A 15 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVVGAQSLKEMVSKLKKPRRIILLVKAGQAVDDFIEK---LVP 91 (484)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHTBCSSCEEEECSCSSHHHHHHHHH---HGG
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHhcccCCCceeccCCHHHHHhhccCCCEEEEecCChHHHHHHHHH---HHH
Confidence 899999999999999999999999999998763 234689999987 499999999998899999864 888
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCe-----
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNI----- 148 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v----- 148 (286)
.+.+|++|||+||+.|.+++++.+.+.++|++|+++|++|++..+..|. ++|+||+++++++++++|+.++.++
T Consensus 92 ~L~~g~iIId~st~~~~~t~~~~~~l~~~Gi~fvd~pVsGg~~gA~~G~-~im~GG~~ea~~~v~pll~~ig~~v~~~~~ 170 (484)
T 4gwg_A 92 LLDTGDIIIDGGNSEYRDTTRRCRDLKAKGILFVGSGVSGGEEGARYGP-SLMPGGNKEAWPHIKTIFQGIAAKVGTGEP 170 (484)
T ss_dssp GCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHHHSCBCTTSCB
T ss_pred hcCCCCEEEEcCCCCchHHHHHHHHHHhhccccccCCccCCHHHHhcCC-eeecCCCHHHHHHHHHHHHHhcCcccCCCc
Confidence 8999999999999999999999999999999999999999999999999 8999999999999999999999887
Q ss_pred --EecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHH---HccCCCcccccccCCCCCccccCCCC
Q psy764 149 --VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVI---NTSSGRCWSSEVYNPVPGVLSNVPAS 222 (286)
Q Consensus 149 --~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~---~~~~~~s~~~~~~~~~~~~~~~~~~~ 222 (286)
+|+|+.|+|+.+|+++|.+.++++++++|++.++++ +|+|++++.+++ +.+.+.||.++++.+. +..
T Consensus 171 ~~~~~G~~Gag~~vKmv~N~i~~~~m~~iaEa~~l~~~~~Gld~~~l~~v~~~w~~G~~~S~l~e~~~~~-------l~~ 243 (484)
T 4gwg_A 171 CCDWVGDEGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGMAQDEMAQAFEDWNKTELDSFLIEITANI-------LKF 243 (484)
T ss_dssp SBCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHH-------HHC
T ss_pred eEEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCCCccchHHHHHHHH-------Hhc
Confidence 899999999999999999999999999999999999 999999999987 5678899988776531 123
Q ss_pred CCCCCCccchhHH-----HHH-HHHHHHHhhcCCCch-HHHHHHHHHHHH
Q psy764 223 NNYNGGFKISLLA-----KDM-KLAEDLANRCTAQTD-LSKLATSIYKRL 265 (286)
Q Consensus 223 ~~~~~~f~~~~~~-----kd~-~~~~~~a~~~g~~~p-~~~~~~~~~~~a 265 (286)
+|+.+++.++... |+. +...+.|.++|+|+| +.+++...+..+
T Consensus 244 ~D~~g~~~ld~i~d~~~~kgtG~wt~~~A~~~gvp~p~i~~av~~R~~S~ 293 (484)
T 4gwg_A 244 QDTDGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLSS 293 (484)
T ss_dssp BCTTSSBSGGGSCCCCCSSCTTHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CCccCCccHHHHhccccCcchHHHHHHHHHHcCCCchHHHHHHHHHHHhh
Confidence 3444444454433 222 345667889999999 666666666554
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=280.09 Aligned_cols=246 Identities=18% Similarity=0.206 Sum_probs=221.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----cCCcccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----EGANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----~g~~~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||++||.+|+++||+|++|||++++++.+.+ .|+..+.++++++++ +|+||+|||+++++++++.+ +.+
T Consensus 21 MG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~---l~~ 97 (497)
T 2p4q_A 21 MGQNLILNAADHGFTVCAYNRTQSKVDHFLANEAKGKSIIGATSIEDFISKLKRPRKVMLLVKAGAPVDALINQ---IVP 97 (497)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSSHHHHHHHHTTTTTSSEECCSSHHHHHHTSCSSCEEEECCCSSHHHHHHHHH---HGG
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHcccccCCCeEEeCCHHHHHhcCCCCCEEEEEcCChHHHHHHHHH---HHH
Confidence 8999999999999999999999999999987 578888999999987 99999999988899999964 888
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCC------
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN------ 147 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~------ 147 (286)
.+++|++|||+||+.|..++++.+.+.++|+.|+++|++|++..+..|+ ++++||+++.+++++++|+.++.+
T Consensus 98 ~l~~g~iIId~s~~~~~~~~~l~~~l~~~g~~~v~~pVsgg~~~a~~G~-~im~gg~~e~~~~v~~ll~~~g~~~dGe~~ 176 (497)
T 2p4q_A 98 LLEKGDIIIDGGNSHFPDSNRRYEELKKKGILFVGSGVSGGEEGARYGP-SLMPGGSEEAWPHIKNIFQSISAKSDGEPC 176 (497)
T ss_dssp GCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECGGGHHHHHHHHHHHSCEETTEES
T ss_pred hCCCCCEEEECCCCChhHHHHHHHHHHHcCCceeCCCcccChhHhhcCC-eEEecCCHHHHHHHHHHHHHhcCccCCCCc
Confidence 8999999999999999999999998888899999999999999999999 899999999999999999999987
Q ss_pred eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---ccCCCcccccccCCCCCccccCCCCC
Q psy764 148 IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVIN---TSSGRCWSSEVYNPVPGVLSNVPASN 223 (286)
Q Consensus 148 v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~ 223 (286)
+.++|+.|+|..+|+++|.+.+.++++++|++.++++ +|++++++.+++. .+.+.|+.++++.+ .+..+
T Consensus 177 v~~vg~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~~~~~w~~g~~~S~l~~~~~~-------~l~~~ 249 (497)
T 2p4q_A 177 CEWVGPAGAGHYVKMVHNGIEYGDMQLICEAYDIMKRLGGFTDKEISDVFAKWNNGVLDSFLVEITRD-------ILKFD 249 (497)
T ss_dssp CCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTTTTCBHHHHHHHH-------HHTCB
T ss_pred eEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHhcCCccccHHHHHHHH-------HHhcC
Confidence 7899999999999999999999999999999999999 6999999999984 56778888776543 12356
Q ss_pred CCCCCccchhHH-----HHHH-HHHHHHhhcCCCchHHHHH
Q psy764 224 NYNGGFKISLLA-----KDMK-LAEDLANRCTAQTDLSKLA 258 (286)
Q Consensus 224 ~~~~~f~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~ 258 (286)
+|.++|.++.+. ||.. .+.+.++++|+++|++..+
T Consensus 250 d~~~~~~vd~i~D~~~~KgtG~~~~~~A~~~Gv~~P~~~~a 290 (497)
T 2p4q_A 250 DVDGKPLVEKIMDTAGQKGTGKWTAINALDLGMPVTLIGEA 290 (497)
T ss_dssp CTTSSBGGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCccHHHHHHHhhccchHHHHHHHHHHHcCCCCchHHHH
Confidence 776668888777 8865 7899999999999998885
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-35 Score=268.77 Aligned_cols=244 Identities=15% Similarity=0.156 Sum_probs=204.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------------------CCcccCCHHHHhhcCcEEEEecCChh--
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------------------GANMALSLSTLASGAEFIISMLPASQ-- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~adivi~~v~~~~-- 59 (286)
||+++|.+|+++||+|++|||++++++.+++. ++++++++++++++||+||+|||+|.
T Consensus 19 vG~~~A~~La~~G~~V~~~D~~~~kv~~l~~g~~~~~epgl~~~~~~~~~~g~l~~ttd~~ea~~~aDvvii~Vptp~~~ 98 (446)
T 4a7p_A 19 VGLVSGACFSDFGHEVVCVDKDARKIELLHQNVMPIYEPGLDALVASNVKAGRLSFTTDLAEGVKDADAVFIAVGTPSRR 98 (446)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCSTTHHHHTTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHTTCSEEEECCCCCBCT
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcCCCCccCCCHHHHHHhhcccCCEEEECCHHHHHhcCCEEEEEcCCCCcc
Confidence 89999999999999999999999999988652 24677899999999999999999885
Q ss_pred --------HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCce--------
Q psy764 60 --------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL-------- 123 (286)
Q Consensus 60 --------~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l-------- 123 (286)
.+++++. ++.+.+++|++||++||+.|.+++++.+.+.+.+.. .+.++.++|..+.+|.+
T Consensus 99 ~~~~~Dl~~v~~v~~---~i~~~l~~g~iVV~~STv~pgtt~~l~~~l~e~~~~-~d~~v~~~Pe~a~eG~a~~d~~~p~ 174 (446)
T 4a7p_A 99 GDGHADLSYVFAAAR---EIAENLTKPSVIVTKSTVPVGTGDEVERIIAEVAPN-SGAKVVSNPEFLREGAAIEDFKRPD 174 (446)
T ss_dssp TTCCBCTHHHHHHHH---HHHHSCCSCCEEEECSCCCTTHHHHHHHHHHHHSTT-SCCEEEECCCCCCTTSHHHHHHSCS
T ss_pred ccCCccHHHHHHHHH---HHHHhcCCCCEEEEeCCCCchHHHHHHHHHHHhCCC-CCceEEeCcccccccchhhhccCCC
Confidence 5888886 488889999999999999999999999988876533 44555555555555553
Q ss_pred EEEecCC-HhhHHHHHHHHHHhcCC---eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 124 TFMVGGD-KSSLEKAKPILKCMGRN---IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 124 ~~~~gg~-~~~~~~~~~ll~~~g~~---v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
.+++|++ ++.+++++++|+.++++ ++++++++.|+..|+++|++.+.++++++|+..+|+++|+|+++++++++..
T Consensus 175 ~ivvG~~~~~~~~~~~~ly~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~GiD~~~v~~~~~~~ 254 (446)
T 4a7p_A 175 RVVVGTEDEFARQVMREIYRPLSLNQSAPVLFTGRRTSELIKYAANAFLAVKITFINEIADLCEQVGADVQEVSRGIGMD 254 (446)
T ss_dssp CEEEECSCHHHHHHHHHHHCSCC-----CEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTS
T ss_pred EEEEeCCcHHHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhcC
Confidence 6788886 78999999999999875 6888899999999999999999999999999999999999999999999875
Q ss_pred CCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 200 SGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 200 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
+.-++. .+. ..++|...++.||+.++.+.|++.|+++|++++++++.+..
T Consensus 255 ~rig~~--~l~--------------pg~G~gg~c~~KD~~~l~~~A~~~g~~~~l~~~~~~iN~~~ 304 (446)
T 4a7p_A 255 NRIGGK--FLH--------------AGPGYGGSCFPKDTLALMKTAADNETPLRIVEATVQVNDAR 304 (446)
T ss_dssp TTC-----CCC--------------CCSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCCCCc--cCC--------------CCCCcchhhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 311110 011 13578899999999999999999999999999999987654
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-35 Score=269.59 Aligned_cols=246 Identities=18% Similarity=0.236 Sum_probs=216.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----CCcccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----GANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
||++||.+|+++||+|.+|||++++++.+.+. |+..+.++++++++ +|+||+|||+++++++++.+ +.+.
T Consensus 26 MG~~lA~~La~~G~~V~v~~r~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVil~Vp~~~~v~~vl~~---l~~~ 102 (480)
T 2zyd_A 26 MGRNLALNIESRGYTVSIFNRSREKTEEVIAENPGKKLVPYYTVKEFVESLETPRRILLMVKAGAGTDAAIDS---LKPY 102 (480)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHSTTSCEEECSSHHHHHHTBCSSCEEEECSCSSSHHHHHHHH---HGGG
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHhhCCCCCeEEeCCHHHHHhCCCCCCEEEEECCCHHHHHHHHHH---HHhh
Confidence 89999999999999999999999999999875 78888999999987 99999999987889999964 8888
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCC-------
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN------- 147 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~------- 147 (286)
+.+|++|||+|++.+..++++.+.+.+.|+.|+++|++|++..+..|. ++++||+++.+++++++|+.++.+
T Consensus 103 l~~g~iIId~s~g~~~~t~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~~g~~~~dGe~~ 181 (480)
T 2zyd_A 103 LDKGDIIIDGGNTFFQDTIRRNRELSAEGFNFIGTGVSGGEEGALKGP-SIMPGGQKEAYELVAPILTKIAAVAEDGEPC 181 (480)
T ss_dssp CCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEESCHHHHHHHHHHHHHHSCBCTTSCBS
T ss_pred cCCCCEEEECCCCCHHHHHHHHHHHHHCCCCeeCCccccCHhHHhcCC-eEEecCCHHHHHHHHHHHHHHhccccCCCce
Confidence 889999999999999999999888888899999999999999999999 899999999999999999999987
Q ss_pred eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---ccCCCcccccccCCCCCccccCCCCC
Q psy764 148 IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVIN---TSSGRCWSSEVYNPVPGVLSNVPASN 223 (286)
Q Consensus 148 v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~~ 223 (286)
+.++|+.|++..+|+++|.+.+.++++++|++.++++ .|++++++.+++. .+..+|+..+...+ .+.++
T Consensus 182 v~~~g~~G~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~lGl~~~~~~~l~~~w~~g~~~s~l~~~~~~-------~l~~~ 254 (480)
T 2zyd_A 182 VTYIGADGAGHYVKMVHNGIEYGDMQLIAEAYSLLKGGLNLTNEELAQTFTEWNNGELSSYLIDITKD-------IFTKK 254 (480)
T ss_dssp BCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTTCBHHHHHHHH-------HHHCB
T ss_pred EEEECCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCcccHHHHHHHH-------HHhcC
Confidence 7899999999999999999999999999999999999 6999999999984 46667776654433 11245
Q ss_pred CCCCCccchhHH-----HHH-HHHHHHHhhcCCCchHHHHH
Q psy764 224 NYNGGFKISLLA-----KDM-KLAEDLANRCTAQTDLSKLA 258 (286)
Q Consensus 224 ~~~~~f~~~~~~-----kd~-~~~~~~a~~~g~~~p~~~~~ 258 (286)
+|.++|.++... |+. +.+.+.+++.|+++|+++.+
T Consensus 255 d~~~~~~v~~i~D~~~~k~tG~~~~~~A~~~gv~~Pi~~~a 295 (480)
T 2zyd_A 255 DEDGNYLVDVILDEAANKGTGKWTSQSALDLGEPLSLITES 295 (480)
T ss_dssp CTTSSBGGGGBCCCCCCCSCTTHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCcchHHHHHHHhcCchHHHHHHHHHHHcCCCCchHHHH
Confidence 665567777655 443 47889999999999999886
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=257.77 Aligned_cols=252 Identities=18% Similarity=0.218 Sum_probs=219.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----cCCcccCCHHHHhh---cCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----EGANMALSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----~g~~~~~s~~e~~~---~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||+++|.+|+++||+|.+|||++++++.+.+ .|+..+.+++++++ ++|+||+|||+++.+++++.+ +.+
T Consensus 13 mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~~~g~gi~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~---l~~ 89 (482)
T 2pgd_A 13 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIEK---LVP 89 (482)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhccccCCCeEEeCCHHHHHhhccCCCEEEEeCCChHHHHHHHHH---HHh
Confidence 8999999999999999999999999999987 67888899999885 899999999987789999874 778
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCe-----
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNI----- 148 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v----- 148 (286)
.+.+|++|||+++..+..++++.+.+.+.|+.|+++|+++++..+..|+ .+++||+++.+++++++|+.++.++
T Consensus 90 ~l~~g~iII~~s~~~~~~~~~l~~~l~~~g~~~v~~pv~g~~~~a~~g~-~i~~gg~~e~~~~v~~ll~~~g~~v~d~~~ 168 (482)
T 2pgd_A 90 LLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVGTGEP 168 (482)
T ss_dssp HCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHHHSCBCTTSCB
T ss_pred hcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEeCCCCCCChhhhccCC-eEEeCCCHHHHHHHHHHHHHhhhhccCCCc
Confidence 8889999999999999988888888888899999999999999999999 7899999999999999999999876
Q ss_pred --EecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHHHHHHH---ccCCCcccccccCCCCCccccCCCC
Q psy764 149 --VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKL-GMNAKLLSDVIN---TSSGRCWSSEVYNPVPGVLSNVPAS 222 (286)
Q Consensus 149 --~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~-Gl~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~ 222 (286)
.++|+.|.+..+|+++|.+.+.++.+++|++.++++. |++++++.+++. .+...|+..++..+ .+..
T Consensus 169 ~~~~~g~~g~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~~G~~~~~~~~~~~~w~~g~~~S~l~~~~~~-------~l~~ 241 (482)
T 2pgd_A 169 CCDWVGDDGAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITAS-------ILKF 241 (482)
T ss_dssp SCCCCEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHH-------HHHC
T ss_pred ceEEECCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHhcCCCcCchHHHHHhH-------Hhhc
Confidence 7888899999999999999999999999999999999 999999999985 45566776655432 1124
Q ss_pred CCCCCCccchhH------HHHHHHHHHHHhhcCCCchHHH-HHHHHHHH
Q psy764 223 NNYNGGFKISLL------AKDMKLAEDLANRCTAQTDLSK-LATSIYKR 264 (286)
Q Consensus 223 ~~~~~~f~~~~~------~kd~~~~~~~a~~~g~~~p~~~-~~~~~~~~ 264 (286)
++++++|.++.. .++.+.+.+.++++|+++|++. .+.+.+..
T Consensus 242 ~d~~~~~~ld~i~d~~~~k~t~~~~~~~A~~~Gv~~P~i~~av~~~~~s 290 (482)
T 2pgd_A 242 QDADGKHLLPKIRDSAGQKGTGKWTAISALEYGVPVTLIGEAVFARCLS 290 (482)
T ss_dssp BCTTSSBSGGGSCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred cCCCCCeeecccccccccccHHHHHHHHHHHcCCCcchHHHHHHHHhhh
Confidence 566666777665 4778889999999999999995 67766643
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=255.30 Aligned_cols=245 Identities=16% Similarity=0.182 Sum_probs=202.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------------------CCcccCCHHHHhhcCcEEEEecCChh--
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------------------GANMALSLSTLASGAEFIISMLPASQ-- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~adivi~~v~~~~-- 59 (286)
||+++|.+|+++||+|++|||++++++.+.+. ++..++++++++++||+||+|||++.
T Consensus 13 vG~~lA~~La~~G~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~l~~~~~~~~l~~t~d~~ea~~~aDvViiaVptp~~~ 92 (450)
T 3gg2_A 13 VGLVSATCFAELGANVRCIDTDRNKIEQLNSGTIPIYEPGLEKMIARNVKAGRLRFGTEIEQAVPEADIIFIAVGTPAGE 92 (450)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTCSCCCSTTHHHHHHHHHHTTSEEEESCHHHHGGGCSEEEECCCCCBCT
T ss_pred HHHHHHHHHHhcCCEEEEEECCHHHHHHHHcCCCcccCCCHHHHHHhhcccCcEEEECCHHHHHhcCCEEEEEcCCCccc
Confidence 79999999999999999999999999888761 24567889999999999999999874
Q ss_pred -------HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCc---eEeccCCCCHHhhhcCce------
Q psy764 60 -------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQIT---FLDAPVSGGTKAAQEATL------ 123 (286)
Q Consensus 60 -------~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~---~~~~pv~g~~~~a~~g~l------ 123 (286)
.+++++.+ +.+.++++++||++||+.|.+++++.+.+.+.+.. ..+.++..+|..+..|..
T Consensus 93 ~~~~dl~~v~~v~~~---i~~~l~~g~iVV~~STv~pgt~~~l~~~l~~~~~~~~~~~d~~v~~~Pe~a~eG~~~~~~~~ 169 (450)
T 3gg2_A 93 DGSADMSYVLDAARS---IGRAMSRYILIVTKSTVPVGSYRLIRKAIQEELDKREVLIDFDIASNPEFLKEGNAIDDFMK 169 (450)
T ss_dssp TSSBCCHHHHHHHHH---HHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHTTCCCCEEEEECCCCCCTTSHHHHHHS
T ss_pred CCCcChHHHHHHHHH---HHhhCCCCCEEEEeeeCCCcchHHHHHHHHHhccccCcCcceeEEechhhhcccchhhhccC
Confidence 78888864 88889999999999999999999998887765321 134455555555555554
Q ss_pred --EEEecC-CHhhHHHHHHHHHHhcC--CeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc
Q psy764 124 --TFMVGG-DKSSLEKAKPILKCMGR--NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINT 198 (286)
Q Consensus 124 --~~~~gg-~~~~~~~~~~ll~~~g~--~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~ 198 (286)
.+++|| +++.+++++++|+.++. .++++++++.++.+|+++|++.+.++++++|+..+|+++|+|+++++++++.
T Consensus 170 p~~ivvG~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~~aE~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~ 249 (450)
T 3gg2_A 170 PDRVVVGVDSDRARELITSLYKPMLLNNFRVLFMDIASAEMTKYAANAMLATRISFMNDVANLCERVGADVSMVRLGIGS 249 (450)
T ss_dssp CSCEEEEESSHHHHHHHHHHHTTTCCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHT
T ss_pred CCEEEEEcCCHHHHHHHHHHHHHHhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHcC
Confidence 577777 58899999999999986 3678888999999999999999999999999999999999999999999986
Q ss_pred cCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 199 SSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 199 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
++- +....+.| .++|...++.||+.++.+.|++.|+++|++++++++.+..
T Consensus 250 ~~r--ig~~~~~p--------------g~G~gg~c~~KD~~~l~~~a~~~g~~~~l~~~~~~iN~~~ 300 (450)
T 3gg2_A 250 DSR--IGSKFLYP--------------GCGYGGSCFPKDVKALIRTAEDNGYRMEVLEAVERVNEKQ 300 (450)
T ss_dssp STT--TCSSSCCC--------------SSCCCSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred CCC--CCcccCCC--------------CCCCCcccHHhhHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 531 11111111 2467889999999999999999999999999999987643
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-33 Score=254.14 Aligned_cols=246 Identities=15% Similarity=0.126 Sum_probs=202.9
Q ss_pred ccHHHHHHHHhC-CC-cEEEEcCCch----HHHHHHHc---------------------C-CcccCCHHHHhhcCcEEEE
Q psy764 2 ISTLKLFFLQFQ-GH-DVIVYDKNTD----ASQTLAKE---------------------G-ANMALSLSTLASGAEFIIS 53 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~-~V~~~dr~~~----~~~~l~~~---------------------g-~~~~~s~~e~~~~adivi~ 53 (286)
||+++|.+|+++ || +|++|||+++ +++.+++. | +.++++ .+++++||+||+
T Consensus 29 mG~~lA~~la~~~G~~~V~~~D~~~~~~~~kv~~l~~g~~~i~~~e~gl~~l~~~~~~~g~l~~ttd-~ea~~~aDvVii 107 (478)
T 3g79_A 29 VGIPAAVLFADAPCFEKVLGFQRNSKSSGYKIEMLNRGESPLKGEEPGLEELIGKVVKAGKFECTPD-FSRISELDAVTL 107 (478)
T ss_dssp THHHHHHHHHHSTTCCEEEEECCCCTTTTTHHHHHTTTCCCSSCCGGGHHHHHHHHHHTTCEEEESC-GGGGGGCSEEEE
T ss_pred HHHHHHHHHHHhCCCCeEEEEECChhHhHHHHHHHHhcCCCccccCCCHHHHHHhhcccCCeEEeCc-HHHHhcCCEEEE
Confidence 899999999999 99 9999999999 88887641 2 334455 678899999999
Q ss_pred ecCChh--------HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHH--hcC------CceEeccCCCCHHh
Q psy764 54 MLPASQ--------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAR--EKQ------ITFLDAPVSGGTKA 117 (286)
Q Consensus 54 ~v~~~~--------~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~--~~g------~~~~~~pv~g~~~~ 117 (286)
|||++. +++.|....+++.+.+++|++||++||+.|.+++++.+.+. ..| +.++++|++..+..
T Consensus 108 aVptp~~~~~~~~~dl~~v~~~~~~i~~~l~~g~iVV~~STv~pgtt~~v~~~ile~~~g~~~~~d~~v~~~Pe~~~~G~ 187 (478)
T 3g79_A 108 AIQTPFANPKDLEPDFSALIDGIRNVGKYLKPGMLVVLESTITPGTTEGMAKQILEEESGLKAGEDFALAHAPERVMVGR 187 (478)
T ss_dssp CCCCCCCSSCCSSCCCHHHHHHHHHHHHHCCTTCEEEECSCCCTTTTTTHHHHHHHHHHCCCBTTTBEEEECCCCCCTTS
T ss_pred ecCCchhccCCccccHHHHHHHHHHHHhhcCCCcEEEEeCCCChHHHHHHHHHHHHHhcCCCcCCceeEEeCCccCCccc
Confidence 999873 34444433345888899999999999999999999987443 344 46889999988877
Q ss_pred hhcCce---EEEecCCHhhHHHHHHHHHHh-cCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q psy764 118 AQEATL---TFMVGGDKSSLEKAKPILKCM-GRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193 (286)
Q Consensus 118 a~~g~l---~~~~gg~~~~~~~~~~ll~~~-g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~ 193 (286)
+..+.+ .++.|++++.+++++++|+.+ +..+++++++++|+.+|+++|++.+.++++++|+..+|++.|+|+++++
T Consensus 188 a~~~~~~~~~Iv~G~~~~~~~~~~~ly~~~~~~~~~~~~~~~~aE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~ 267 (478)
T 3g79_A 188 LLKNIREHDRIVGGIDEASTKRAVELYSPVLTVGQVIPMSATAAEVTKTAENTFRDLQIAAINQLALYCEAMGINVYDVR 267 (478)
T ss_dssp HHHHHHHSCEEEEESSHHHHHHHHHHHGGGCSSCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred hhhhhcCCcEEEEeCCHHHHHHHHHHHhhhccCCeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 755443 688899999999999999999 7889999999999999999999999999999999999999999999999
Q ss_pred HHHHccCCCcccccccCCCCCccccCCCCCCCCCC--ccchhHHHHHHHHHHHHhhcCCC-------chHHHHHHHHHHH
Q psy764 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGG--FKISLLAKDMKLAEDLANRCTAQ-------TDLSKLATSIYKR 264 (286)
Q Consensus 194 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~kd~~~~~~~a~~~g~~-------~p~~~~~~~~~~~ 264 (286)
++++.. |..+ +....|.|+ |...++.||+.++.+.+++.|++ ++++++++++.+.
T Consensus 268 ~~~~~~----~~~r------------i~~~~~~PG~G~GG~c~~KD~~~l~~~a~~~g~~~~~~~~~~~li~~~~~iN~~ 331 (478)
T 3g79_A 268 TGVDSL----KGEG------------ITRAVLWPGAGVGGHCLTKDTYHLERGVKIGRGELDYPEGADSIYVLARKVNDF 331 (478)
T ss_dssp HHHHTS----CCSS------------SCCCCCCCCSCCCSSHHHHHHHHHHHHHTTSSCCCCCCSSCCCHHHHHHHHHHH
T ss_pred HHHCCC----chhh------------hccccCCCCCCcchhhHHHHHHHHHHHHHHcCCCcccccchhHHHHHHHHHHHH
Confidence 999864 2111 112334454 46789999999999999999987 8999999887554
|
| >1i36_A Conserved hypothetical protein MTH1747; NADP binding domain, protein NADP complex, structural genomics, PSI; HET: NAP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: a.100.1.8 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=239.60 Aligned_cols=246 Identities=15% Similarity=0.192 Sum_probs=205.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcC--CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK--NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr--~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||++++.+|+++||+|++||| ++++.+.+.+.|+. .++.++++++|+||+|||++...+.+. ++.+.+++
T Consensus 11 mG~~la~~l~~~g~~V~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~aDvvi~~v~~~~~~~~~~----~~~~~~~~-- 82 (264)
T 1i36_A 11 VAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVT--ETSEEDVYSCPVVISAVTPGVALGAAR----RAGRHVRG-- 82 (264)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCE--ECCHHHHHTSSEEEECSCGGGHHHHHH----HHHTTCCS--
T ss_pred HHHHHHHHHHHCCCeEEEeCCccCHHHHHHHHHCCCc--CCHHHHHhcCCEEEEECCCHHHHHHHH----HHHHhcCc--
Confidence 899999999999999999999 77888888777877 778899999999999999876666653 36666655
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCC-cchHH
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGD-SGNGQ 158 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~-~g~a~ 158 (286)
+|||+|++.|.+.+++.+.+.+.| |+++|+++++..+..+.+ ++++|+.. +++++ |+.+|.+++++++ .|.+.
T Consensus 83 ~vi~~s~~~~~~~~~l~~~~~~~g--~~~~~v~~~~~~~~~g~~-~~~~g~~~--~~~~~-l~~~g~~~~~~~~~~g~~~ 156 (264)
T 1i36_A 83 IYVDINNISPETVRMASSLIEKGG--FVDAAIMGSVRRKGADIR-IIASGRDA--EEFMK-LNRYGLNIEVRGREPGDAS 156 (264)
T ss_dssp EEEECSCCCHHHHHHHHHHCSSSE--EEEEEECSCHHHHGGGCE-EEEESTTH--HHHHG-GGGGTCEEEECSSSTTHHH
T ss_pred EEEEccCCCHHHHHHHHHHHhhCC--eeeeeeeCCccccccCCe-EEecCCcH--HHhhh-HHHcCCeeEECCCCcCHHH
Confidence 999999999999889988887776 999999999998888987 88888876 88899 9999998899997 89999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHH
Q psy764 159 VAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDM 238 (286)
Q Consensus 159 ~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~ 238 (286)
.+|+++|.+.+.++.+++|++.++++.|+|++ .++.+..+.+.++.. ..+ .+.++++.++|+ ..||+
T Consensus 157 ~~kl~~n~~~~~~~~~~~Ea~~la~~~G~~~~-~~~~~~~~~g~~~~~--~~~-------~~~~~~~~~g~~---~~~~~ 223 (264)
T 1i36_A 157 AIKMLRSSYTKGVSALLWETLTAAHRLGLEED-VLEMLEYTEGNDFRE--SAI-------SRLKSSCIHARR---RYEEM 223 (264)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH-HHHHHHTTSCSSTHH--HHH-------HHHHHHHHTHHH---HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHhcCccHHH--HHH-------HHhcCCCCcchh---hHHHH
Confidence 99999999999999999999999999999997 778888765545532 111 122466677766 68999
Q ss_pred HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCch
Q psy764 239 KLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDF 275 (286)
Q Consensus 239 ~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~ 275 (286)
+.+.+++++. +++|+.++++++|+++.+.|++.+|-
T Consensus 224 ~~~~~~a~~~-v~~p~~~~v~~~~~~~~~~~~~~~~~ 259 (264)
T 1i36_A 224 KEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSADAR 259 (264)
T ss_dssp HHHHHHHHTT-SCCSHHHHHHHHHHHHCC------GG
T ss_pred HHHHHHHHHh-cCchHHHHHHHHHHHHHHcCCChhhH
Confidence 9999999999 99999999999999999998877764
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-32 Score=252.36 Aligned_cols=246 Identities=19% Similarity=0.261 Sum_probs=213.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----CCcccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----GANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
||+++|.+|+++||+|.+|||++++++.+.+. |+..+.++++++++ +|+||+|||+++.+++++.+ +.+.
T Consensus 16 mG~~lA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~gi~~~~s~~e~v~~l~~aDvVilavp~~~~v~~vl~~---l~~~ 92 (474)
T 2iz1_A 16 MGKNLALNVESRGYTVAIYNRTTSKTEEVFKEHQDKNLVFTKTLEEFVGSLEKPRRIMLMVQAGAATDATIKS---LLPL 92 (474)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSCEEECSSHHHHHHTBCSSCEEEECCCTTHHHHHHHHH---HGGG
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHhCcCCCeEEeCCHHHHHhhccCCCEEEEEccCchHHHHHHHH---HHhh
Confidence 89999999999999999999999999998765 77888899999887 99999999987889999864 7888
Q ss_pred CCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCC-------
Q psy764 75 AKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN------- 147 (286)
Q Consensus 75 l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~------- 147 (286)
+.+|++|||+++..+..++++.+.+.+.|+.|+++|+++++..+..|. ++++||+++.+++++++|+.++.+
T Consensus 93 l~~g~iiId~s~~~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~~g~~~~~dge~ 171 (474)
T 2iz1_A 93 LDIGDILIDGGNTHFPDTMRRNAELADSGINFIGTGVSGGEKGALLGP-SMMPGGQKEAYDLVAPIFEQIAAKAPQDGKP 171 (474)
T ss_dssp CCTTCEEEECSCCCHHHHHHHHHHTTTSSCEEEEEEECSHHHHHHHCC-CEEEEECHHHHHHHHHHHHHHSCBCTTTCCB
T ss_pred CCCCCEEEECCCCCHHHHHHHHHHHHHCCCeEECCCCCCChhhhccCC-eEEecCCHHHHHHHHHHHHHHhcccccCCCc
Confidence 889999999999999988888888877899999999999999999898 788999999999999999999987
Q ss_pred -eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHH---ccCCCcccccccCCCCCccccCCCC
Q psy764 148 -IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVIN---TSSGRCWSSEVYNPVPGVLSNVPAS 222 (286)
Q Consensus 148 -v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~~---~~~~~s~~~~~~~~~~~~~~~~~~~ 222 (286)
+.++|+.|++..+|+++|.+.+.++++++|++.++++ .|++++++.+++. .+...|+..+...+ .+..
T Consensus 172 ~~~~~g~~g~g~~~Kl~~N~~~~~~~~~laEa~~l~~~~~Gl~~~~~~~l~~~w~~g~~~s~l~~~~~~-------~l~~ 244 (474)
T 2iz1_A 172 CVAYMGANGAGHYVKMVHNGIEYGDMQLIAESYDLLKRILGLSNAEIQAIFEEWNEGELDSYLIEITKE-------VLKR 244 (474)
T ss_dssp SBCCCBSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHH-------HTTC
T ss_pred eEEEECCccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhcCCCccccHHHhhhh-------Hhhc
Confidence 6889999999999999999999999999999999999 7999999999985 34556665544322 1235
Q ss_pred CCCCCC-ccchhHH-----HHHH-HHHHHHhhcCCCchHHHHH
Q psy764 223 NNYNGG-FKISLLA-----KDMK-LAEDLANRCTAQTDLSKLA 258 (286)
Q Consensus 223 ~~~~~~-f~~~~~~-----kd~~-~~~~~a~~~g~~~p~~~~~ 258 (286)
+++.++ |.++... |+.. ...+.++++|+++|+++.+
T Consensus 245 ~d~~~g~~~vd~i~D~~~~k~tG~~~~~~A~~~gv~~P~~~~a 287 (474)
T 2iz1_A 245 KDDEGEGYIVDKILDKAGNKGTGKWTSESALDLGVPLPLITES 287 (474)
T ss_dssp BCSSSSSBGGGGBCSCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred CCCCCChhHHHHHHHhhcccchHHHHHHHHHHcCCCCchHHHH
Confidence 666666 7777654 6655 6889999999999999886
|
| >3ojo_A CAP5O; rossmann fold, complex with cofactor NAD and EU(PDC)3, oxidi conformation, oxidoreductase; HET: NAD PDC; 2.50A {Staphylococcus aureus} PDB: 3ojl_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-33 Score=250.70 Aligned_cols=241 Identities=17% Similarity=0.197 Sum_probs=185.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccC-CHHHH---------------hhcCcEEEEecCChhH-----
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMAL-SLSTL---------------ASGAEFIISMLPASQD----- 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~-s~~e~---------------~~~adivi~~v~~~~~----- 60 (286)
||+++|.+|+++||+|++|||++++++.+++.+..... .++|+ +++||+||+|||+|..
T Consensus 22 vGlp~A~~La~~G~~V~~~D~~~~kv~~L~~g~~pi~epgl~~ll~~~~~~g~l~~ttd~~~aDvvii~VpTp~~~~~~~ 101 (431)
T 3ojo_A 22 IGLPTSIMFAKHGVDVLGVDINQQTIDKLQNGQISIEEPGLQEVYEEVLSSGKLKVSTTPEASDVFIIAVPTPNNDDQYR 101 (431)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESSCCCCSEEEECCCCCBCSSSSC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHhhcccCceEEeCchhhCCEEEEEeCCCccccccC
Confidence 89999999999999999999999999999764322211 12221 3479999999999862
Q ss_pred ---HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHh-cCC------ceEeccCCCCHHhhhcCce---EEEe
Q psy764 61 ---VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLARE-KQI------TFLDAPVSGGTKAAQEATL---TFMV 127 (286)
Q Consensus 61 ---~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~-~g~------~~~~~pv~g~~~~a~~g~l---~~~~ 127 (286)
++.|....+++.+.+++|++||++||+.|.+++++.+.+.+ .|. .++++|.+..+..+..+.+ .++.
T Consensus 102 ~~Dl~~V~~~~~~i~~~l~~g~iVV~~STV~pgtt~~v~~~i~e~~g~~~~~d~~v~~~Pe~~~~G~A~~~~~~p~~Iv~ 181 (431)
T 3ojo_A 102 SCDISLVMRALDSILPFLKKGNTIIVESTIAPKTMDDFVKPVIENLGFTIGEDIYLVHCPERVLPGKILEELVHNNRIIG 181 (431)
T ss_dssp BBCCHHHHHHHHHHGGGCCTTEEEEECSCCCTTHHHHTHHHHHHTTTCCBTTTEEEEECCCCCCTTSHHHHHHHSCEEEE
T ss_pred CccHHHHHHHHHHHHHhCCCCCEEEEecCCChhHHHHHHHHHHHHcCCCcCCCeEEEECCCcCCCcchhhcccCCCEEEE
Confidence 22333333468899999999999999999999999876544 553 6889999988777655443 6888
Q ss_pred cCCHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCccccc
Q psy764 128 GGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSE 207 (286)
Q Consensus 128 gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~ 207 (286)
|++++.+++++++|+.++.++++++++++|+++|+++|++.+.++++++|+..+|+++|+|+++++++++..+. ..
T Consensus 182 G~~~~~~~~~~~ly~~~~~~~~~~~~~~~AE~~Kl~~N~~~a~~Ia~~nE~~~l~e~~GiD~~~v~~~~~~~~r----i~ 257 (431)
T 3ojo_A 182 GVTKACIEAGKRVYRTFVQGEMIETDARTAEMSKLMENTYRDVNIALANELTKICNNLNINVLDVIEMANKHPR----VN 257 (431)
T ss_dssp ESSHHHHHHHHHHHTTTCCSCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTT----CC
T ss_pred eCCHHHHHHHHHHHHHHhCCcEEeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCCC----cc
Confidence 99999999999999999988889999999999999999999999999999999999999999999999986531 11
Q ss_pred ccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q psy764 208 VYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYK 263 (286)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 263 (286)
.+.| .+||...|+.||..++...+++.| +++++++++-+
T Consensus 258 ~l~p--------------G~G~GG~C~pkD~~~L~~~a~~~~---~li~~~~~iN~ 296 (431)
T 3ojo_A 258 IHQP--------------GPGVGGHCLAVDPYFIIAKDPENA---KLIQTGREINN 296 (431)
T ss_dssp CCCC--------------CSCCCCCCBCSCC---------CC---HHHHHHHHHHH
T ss_pred cCCC--------------CCCccccchhhhHHHHHHHHHHHh---HHHHHHHHHHH
Confidence 1222 235666788889888888888877 78888777644
|
| >1pgj_A 6PGDH, 6-PGDH, 6-phosphogluconate dehydrogenase; oxidoreductase, CHOH(D)-NADP+(B); 2.82A {Trypanosoma brucei} SCOP: a.100.1.1 c.2.1.6 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=249.14 Aligned_cols=246 Identities=15% Similarity=0.234 Sum_probs=212.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-C-------CcccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-G-------ANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g-------~~~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||+++|.+|+++||+|.+|||++++++.+.+. | +..+.++++++++ +|+||+|||+++.+++++.+
T Consensus 12 mG~~lA~~La~~G~~V~v~dr~~~~~~~l~~~~g~~~~~~~i~~~~~~~e~v~~l~~aDvVilaVp~~~~v~~vl~~--- 88 (478)
T 1pgj_A 12 MGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQ--- 88 (478)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCCCCCCCCeEEECCHHHHHhcccCCCEEEEecCChHHHHHHHHH---
Confidence 89999999999999999999999999988765 6 6678899999875 99999999987789999864
Q ss_pred ccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCC---
Q psy764 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRN--- 147 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~--- 147 (286)
+.+.+.+|++|||+++..+..++++.+.+.+.|+.|+++|+++++..+..|. .+++||+++.+++++++|+.++.+
T Consensus 89 l~~~l~~g~iIId~sng~~~~~~~l~~~l~~~g~~~v~~pv~gg~~~a~~g~-~i~~gg~~~~~~~v~~ll~~~g~~~~d 167 (478)
T 1pgj_A 89 LKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADD 167 (478)
T ss_dssp HHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHHHHHHSCBCTT
T ss_pred HHhhCCCCCEEEECCCCChHHHHHHHHHHHHCCCeEEEeeccCCHHHHhcCC-eEeccCCHHHHHHHHHHHHHhcccccC
Confidence 7788889999999999999988888888888899999999999999888888 788999999999999999999987
Q ss_pred ----eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH----ccCCCcccccccCCCCCccccC
Q psy764 148 ----IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN----TSSGRCWSSEVYNPVPGVLSNV 219 (286)
Q Consensus 148 ----v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~----~~~~~s~~~~~~~~~~~~~~~~ 219 (286)
+.++|+.|.+..+|+++|.+.+.++.+++|++.++++.|++++++.+++. .+.+.|+..++..+ +
T Consensus 168 g~~~v~~~g~~G~g~~~Kl~~N~~~~~~~~~i~Ea~~l~~~~G~~~~~~~~l~~~w~~~g~~~s~l~~~~~~---~---- 240 (478)
T 1pgj_A 168 GRPCVTMNGSGGAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIA---A---- 240 (478)
T ss_dssp SCBSCCCCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHH---H----
T ss_pred CCeeEEEeCCchHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhccCCCcCchHHHhhch---h----
Confidence 78999999999999999999999999999999999999999999999986 56666776554432 1
Q ss_pred CCCCCCCCCccchhHH-----HHH-HHHHHHHhhcCCCchHHHHH
Q psy764 220 PASNNYNGGFKISLLA-----KDM-KLAEDLANRCTAQTDLSKLA 258 (286)
Q Consensus 220 ~~~~~~~~~f~~~~~~-----kd~-~~~~~~a~~~g~~~p~~~~~ 258 (286)
+.++++.+.|.++... |+. +.+.++++++|+++|+.+.+
T Consensus 241 l~~~d~~G~~~ld~i~D~~~~kgtg~~~~~~A~~~Gv~~Pi~~~a 285 (478)
T 1pgj_A 241 ARAKDKDGSYLTEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMA 285 (478)
T ss_dssp HHCBCTTSSBGGGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHH
T ss_pred hhcCCCCChhHHHHHHHHhcCccHHHHHHHHHHHhCCCChHHHHH
Confidence 1134442226666655 454 68999999999999999983
|
| >3pid_A UDP-glucose 6-dehydrogenase; rossmann fold, oxidoreductase; 1.40A {Klebsiella pneumoniae} PDB: 3pln_A* 3pjg_A* 3phl_A* 3plr_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=9.5e-31 Score=235.18 Aligned_cols=238 Identities=15% Similarity=0.159 Sum_probs=198.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc------------------CCcccCCHHHHhhcCcEEEEecCChh----
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE------------------GANMALSLSTLASGAEFIISMLPASQ---- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~------------------g~~~~~s~~e~~~~adivi~~v~~~~---- 59 (286)
||+++|..|++ ||+|++|||++++++.+++. ++++++++++++++||+||+|||++.
T Consensus 47 mG~~lA~~La~-G~~V~~~D~~~~~v~~l~~g~~~i~e~~l~~ll~~~~~~l~~ttd~~ea~~~aDvViiaVPt~~~~~~ 125 (432)
T 3pid_A 47 VGLSNGVLIAQ-NHEVVALDIVQAKVDMLNQKISPIVDKEIQEYLAEKPLNFRATTDKHDAYRNADYVIIATPTDYDPKT 125 (432)
T ss_dssp HHHHHHHHHHT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHTTCSEEEECCCCEEETTT
T ss_pred HHHHHHHHHHc-CCeEEEEecCHHHhhHHhccCCccccccHHHHHhhccCCeEEEcCHHHHHhCCCEEEEeCCCcccccc
Confidence 89999999998 99999999999999888652 45678899999999999999999872
Q ss_pred ------HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCce---EEEecCC
Q psy764 60 ------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL---TFMVGGD 130 (286)
Q Consensus 60 ------~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l---~~~~gg~ 130 (286)
.+++++. ++.+ +++|++||++||+.|.+++++.+.+.+.+ +..+|+++++..+..+.+ .+++|++
T Consensus 126 ~~~Dl~~V~~v~~---~i~~-l~~g~iVV~~STv~pgtt~~l~~~l~~~~--v~~sPe~~~~G~A~~~~l~p~rIvvG~~ 199 (432)
T 3pid_A 126 NYFNTSTVEAVIR---DVTE-INPNAVMIIKSTIPVGFTRDIKERLGIDN--VIFSPEFLREGRALYDNLHPSRIVIGER 199 (432)
T ss_dssp TEEECHHHHHHHH---HHHH-HCTTSEEEECSCCCTTHHHHHHHHHTCCC--EEECCCCCCTTSHHHHHHSCSCEEESSC
T ss_pred ccccHHHHHHHHH---HHHh-cCCCcEEEEeCCCChHHHHHHHHHHhhcc--EeecCccCCcchhhhcccCCceEEecCC
Confidence 5777776 4888 89999999999999999999999887654 456999999999988877 8999999
Q ss_pred HhhHHHHHHHHHH--hcCC-eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCccccc
Q psy764 131 KSSLEKAKPILKC--MGRN-IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSE 207 (286)
Q Consensus 131 ~~~~~~~~~ll~~--~g~~-v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~ 207 (286)
++.++++.++|.. ++.. .+++++++.|+++|+++|++.+.++++++|+..+|++.|+|+++++++++..+ .+..
T Consensus 200 ~~~~~~~~~ll~~~~~~~~~~v~~~~~~~AE~~Kl~~N~~~a~~Ia~~nEl~~lae~~GiD~~~v~~~~~~dp---rig~ 276 (432)
T 3pid_A 200 SARAERFADLLKEGAIKQDIPTLFTDSTEAEAIKLFANTYLALRVAYFNELDSYAESQGLNSKQIIEGVCLDP---RIGN 276 (432)
T ss_dssp SHHHHHHHHHHHHHCSSSSCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST---TTCS
T ss_pred HHHHHHHHHHHHhhhccCCCeEEecCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHccCC---CCCc
Confidence 9999999999987 4432 35667889999999999999999999999999999999999999999998652 1110
Q ss_pred ccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q psy764 208 VYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKR 264 (286)
Q Consensus 208 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 264 (286)
+.+.| .+||...|+.||...+.. +..|++.++++++.++-+.
T Consensus 277 -~~~~p------------g~G~GG~C~pkD~~~L~~--~~~~~~~~li~~~~~~N~~ 318 (432)
T 3pid_A 277 -HYNNP------------SFGYGGYCLPKDTKQLLA--NYESVPNNIIAAIVDANRT 318 (432)
T ss_dssp -SSCCC------------CSCCCTTTHHHHHHHHHH--HTTTSCCSHHHHHHHHHHH
T ss_pred -ccCCC------------CCCCcccchhhhHHHHHH--HhcCCchhHHHHHHHHHHh
Confidence 00111 235677899999988864 4468999999999987554
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.2e-31 Score=240.89 Aligned_cols=232 Identities=13% Similarity=0.160 Sum_probs=193.7
Q ss_pred CccHHHHHHHHhC--CCcEEEEcCCchHHHHHHH-------------------cCCcccCCHHHHhhcCcEEEEecCChh
Q psy764 1 MISTLKLFFLQFQ--GHDVIVYDKNTDASQTLAK-------------------EGANMALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 1 ~~G~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~-------------------~g~~~~~s~~e~~~~adivi~~v~~~~ 59 (286)
.||+++|.+|+++ ||+|++|||++++++.+++ .++..++++.++++++|+||+|||++.
T Consensus 15 ~mG~~lA~~La~~g~G~~V~~~d~~~~~~~~l~~g~~~i~e~~l~~~~~~~~~~~~~~t~~~~e~~~~aDvViiaVptp~ 94 (467)
T 2q3e_A 15 YVGGPTCSVIAHMCPEIRVTVVDVNESRINAWNSPTLPIYEPGLKEVVESCRGKNLFFSTNIDDAIKEADLVFISVNTPT 94 (467)
T ss_dssp TTHHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSEEEECCCCCB
T ss_pred HHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHHhcCCEEEEEcCCch
Confidence 3899999999999 8999999999999887532 245667889999999999999999876
Q ss_pred HH--------------HHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceE-
Q psy764 60 DV--------------LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT- 124 (286)
Q Consensus 60 ~~--------------~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~- 124 (286)
.. +++.. ++.+.++++++||++||+.|.+++++.+.+.+.+..+++.|++++|..+..|...
T Consensus 95 ~~~~v~~~~~~dl~~v~~~~~---~i~~~l~~g~iVV~~STv~~g~~~~l~~~l~~~~~~~~d~~V~~~Pe~~~~G~~~~ 171 (467)
T 2q3e_A 95 KTYGMGKGRAADLKYIEACAR---RIVQNSNGYKIVTEKSTVPVRAAESIRRIFDANTKPNLNLQVLSNPEFLAEGTAIK 171 (467)
T ss_dssp CCSSTTTTTSBCCHHHHHHHH---HHHHTCCSEEEEEECSCCCTTHHHHHHHHHHHTCCTTCEEEEEECCCCCCTTSHHH
T ss_pred hhccccccCCCcHHHHHHHHH---HHHhhCCCCCEEEECCcCCchHHHHHHHHHHHhCCCCCCeEEEeCHHHhhcccchh
Confidence 43 34443 3667788999999999999999999998888877667888888888888888764
Q ss_pred -------EEecC-----CHhhHHHHHHHHHHh-cCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHH
Q psy764 125 -------FMVGG-----DKSSLEKAKPILKCM-GRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKL 191 (286)
Q Consensus 125 -------~~~gg-----~~~~~~~~~~ll~~~-g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~ 191 (286)
+++|| +++.+++++++|+.+ +..++++++++.++..|+++|.+.+.++++++|+..++++.|+|+++
T Consensus 172 d~~~~~rivvGg~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~ 251 (467)
T 2q3e_A 172 DLKNPDRVLIGGDETPEGQRAVQALCAVYEHWVPREKILTTNTWSSELSKLAANAFLAQRISSINSISALCEATGADVEE 251 (467)
T ss_dssp HHHSCSCEEEECCSSHHHHHHHHHHHHHHTTTSCGGGEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHH
T ss_pred hccCCCEEEECCCCCCCCHHHHHHHHHHHHHhccCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHHH
Confidence 77888 678899999999999 66788999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCC
Q psy764 192 LSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQ 251 (286)
Q Consensus 192 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~ 251 (286)
+.++++..+. +....+.| .++|...++.||+.++.+.+++.|++
T Consensus 252 v~~~~~~~~~--~~~~~~~p--------------g~g~gg~c~~kD~~~l~~~a~~~g~~ 295 (467)
T 2q3e_A 252 VATAIGMDQR--IGNKFLKA--------------SVGFGGSCFQKDVLNLVYLCEALNLP 295 (467)
T ss_dssp HHHHHHTSTT--TCSSSCCC--------------CSCCCSSSHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCCC--CCccccCC--------------CCCCCCccHHHHHHHHHHHHHHcCCc
Confidence 9999986532 11111111 12466778999999999999999986
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-30 Score=233.67 Aligned_cols=242 Identities=17% Similarity=0.170 Sum_probs=200.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC--------------------CcccCCHHHHhhcCcEEEEecCCh---
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG--------------------ANMALSLSTLASGAEFIISMLPAS--- 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------------~~~~~s~~e~~~~adivi~~v~~~--- 58 (286)
||+++|.+|+++||+|++|||++++++.+++.+ +.+++++++++++||+||+|||+|
T Consensus 19 vG~~lA~~la~~G~~V~~~d~~~~~v~~l~~~~~~i~e~gl~~~l~~~~~~~~l~~ttd~~~a~~~aDvviiaVptp~~~ 98 (478)
T 2y0c_A 19 VGLVTGACLADIGHDVFCLDVDQAKIDILNNGGVPIHEPGLKEVIARNRSAGRLRFSTDIEAAVAHGDVQFIAVGTPPDE 98 (478)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEECCHHHHHHHCSEEEECCCCCBCT
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhcccCCEEEECCHHHHhhcCCEEEEEeCCCccc
Confidence 899999999999999999999999999887642 355678888999999999999987
Q ss_pred ------hHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc---CCce-EeccCCCCHHhhhcCce-----
Q psy764 59 ------QDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK---QITF-LDAPVSGGTKAAQEATL----- 123 (286)
Q Consensus 59 ------~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~---g~~~-~~~pv~g~~~~a~~g~l----- 123 (286)
..+++++.. +.+.++++++||++||+.|.+++++.+.+.+. | .| ++.++..+|..+..|..
T Consensus 99 ~~~~dl~~v~~v~~~---i~~~l~~~~iVV~~STv~~gt~~~l~~~l~~~~~~g-~~~~~~~v~~~Pe~~~eG~~~~~~~ 174 (478)
T 2y0c_A 99 DGSADLQYVLAAARN---IGRYMTGFKVIVDKSTVPVGTAERVRAAVAEELAKR-GGDQMFSVVSNPEFLKEGAAVDDFT 174 (478)
T ss_dssp TSSBCCHHHHHHHHH---HHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHHHHT-TCCCCEEEEECCCCCCTTCHHHHHH
T ss_pred CCCccHHHHHHHHHH---HHHhcCCCCEEEEeCCcCCCchHHHHHHHHHHhcCC-CCCccEEEEEChhhhcccceeeccC
Confidence 788888874 88889999999999999999999888877654 3 23 45566677776666664
Q ss_pred ---EEEecCC-H----hhHHHHHHHHHHhcC--CeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q psy764 124 ---TFMVGGD-K----SSLEKAKPILKCMGR--NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193 (286)
Q Consensus 124 ---~~~~gg~-~----~~~~~~~~ll~~~g~--~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~ 193 (286)
.+++|++ + +..++++++|+.+.+ .++++++++.++..|++.|.+.+.++++++|+..+|++.|+|++++.
T Consensus 175 ~p~~iviG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~la~~~Gid~~~v~ 254 (478)
T 2y0c_A 175 RPDRIVIGCDDDVPGERARELMKKLYAPFNRNHERTLYMDVRSAEFTKYAANAMLATRISFMNELANLADRFGADIEAVR 254 (478)
T ss_dssp SCSCEEEECCSSHHHHHHHHHHHHHTGGGGSSSCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred CCCEEEEEECCCcccHHHHHHHHHHHHHHhccCCeEEcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 5777776 5 688999999999875 68888899999999999999999999999999999999999999999
Q ss_pred HHHHccCCCcccccccCCCCCccccCCCCCCCCCC--ccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 194 DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGG--FKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 194 ~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~--f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
+.++... .. ....+.|+ +...+..||..++.++++++|+++|+.++++++++..
T Consensus 255 ~~i~~~~---ri---------------g~~~~~pG~g~gg~c~~kD~~~l~~~A~~~gv~~pl~~~v~~in~~~ 310 (478)
T 2y0c_A 255 RGIGSDP---RI---------------GYHFLYAGCGYGGSCFPKDVEALIRTADEHGQSLQILKAVSSVNATQ 310 (478)
T ss_dssp HHHHTST---TT---------------CSTTCCCSSCCCSSSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHhcCC---cc---------------CcccCCCCcccccCcCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHh
Confidence 8887421 00 01222333 3455789999999999999999999999999988754
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-29 Score=230.72 Aligned_cols=241 Identities=16% Similarity=0.164 Sum_probs=196.2
Q ss_pred ccHHHHHHHHhC--CCcEEEEcCCchHHHHHHHc-------------------CCcccCCHHHHhhcCcEEEEecCChh-
Q psy764 2 ISTLKLFFLQFQ--GHDVIVYDKNTDASQTLAKE-------------------GANMALSLSTLASGAEFIISMLPASQ- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~-------------------g~~~~~s~~e~~~~adivi~~v~~~~- 59 (286)
||+++|.+|+++ ||+|++|||++++++.+++. ++..++++.++++++|+||+|||++.
T Consensus 20 vG~~~A~~La~~g~g~~V~~~D~~~~~v~~l~~g~~~i~e~gl~~~~~~~~~~~l~~t~~~~~~~~~aDvvii~Vptp~~ 99 (481)
T 2o3j_A 20 VGGPTCAMIAHKCPHITVTVVDMNTAKIAEWNSDKLPIYEPGLDEIVFAARGRNLFFSSDIPKAIAEADLIFISVNTPTK 99 (481)
T ss_dssp THHHHHHHHHHHCTTSEEEEECSCHHHHHHHTSSSCSSCCTTHHHHHHHHBTTTEEEESCHHHHHHHCSEEEECCCCCBC
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHCCCCCcCCCCHHHHHHHhhcCCEEEECCHHHHhhcCCEEEEecCCccc
Confidence 899999999998 79999999999999888642 23456678888999999999999874
Q ss_pred -------------HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHh-cCC------ceEeccCCCCHHhhh
Q psy764 60 -------------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLARE-KQI------TFLDAPVSGGTKAAQ 119 (286)
Q Consensus 60 -------------~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~-~g~------~~~~~pv~g~~~~a~ 119 (286)
.+++++. ++.+.++++++||++||+.|.+++++.+.+.+ .+. .+..+|.+..+..+.
T Consensus 100 ~~g~~~~~~~dl~~v~~~~~---~i~~~l~~g~iVV~~STv~~gt~~~l~~~l~~~~~~~~~~d~~v~~~Pe~~~~G~a~ 176 (481)
T 2o3j_A 100 MYGRGKGMAPDLKYVESVSR---TIAQYAGGPKIVVEKSTVPVKAAESIGCILREAQKNNENLKFQVLSNPEFLAEGTAM 176 (481)
T ss_dssp CSSTTTTTSBCCHHHHHHHH---HHHHHCCSCEEEEECSCCCTTHHHHHHHHHHHHTC----CCEEEEECCCCCCTTCHH
T ss_pred cccccccCCCcHHHHHHHHH---HHHHhCCCCCEEEECCCCCCCHHHHHHHHHHHhhCcCcCCceEEEeCcccccccchh
Confidence 3677775 48888999999999999999999999988877 542 245566666555443
Q ss_pred cCce---EEEecCCH-----hhHHHHHHHHHHhcC-CeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q psy764 120 EATL---TFMVGGDK-----SSLEKAKPILKCMGR-NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAK 190 (286)
Q Consensus 120 ~g~l---~~~~gg~~-----~~~~~~~~ll~~~g~-~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~ 190 (286)
...+ .+++|++. +.+++++++|+.++. .++++++++.++..|+++|.+.+.++++++|+..+|++.|+|++
T Consensus 177 ~~~~~~~~iviG~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~d~~~ae~~Kl~~N~~~a~~ia~~nE~~~la~~~Gid~~ 256 (481)
T 2o3j_A 177 KDLANPDRVLIGGESSPEGLQAVAELVRIYENWVPRNRIITTNTWSSELSKLVANAFLAQRISSINSISAVCEATGAEIS 256 (481)
T ss_dssp HHHHSCSCEEEEECSSHHHHHHHHHHHHHHHTTSCGGGEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCHH
T ss_pred hcccCCCEEEEEecCchhhHHHHHHHHHHHHhhcCCCeEEecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCHH
Confidence 2212 57778764 578899999999986 78888999999999999999999999999999999999999999
Q ss_pred HHHHHHHccCCCcccccccCCCCCccccCCCCCCCCC--CccchhHHHHHHHHHHHHhhcCCC--chHHHHHHHHHH
Q psy764 191 LLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNG--GFKISLLAKDMKLAEDLANRCTAQ--TDLSKLATSIYK 263 (286)
Q Consensus 191 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~f~~~~~~kd~~~~~~~a~~~g~~--~p~~~~~~~~~~ 263 (286)
++.++++.++ .+. ...|.| +|...++.||+.++.+.|++.|++ +|+++++.++-+
T Consensus 257 ~v~~~~~~~~---ri~---------------~~~~~pg~g~gg~c~~KD~~~l~~~A~~~g~~~~~~l~~~~~~~N~ 315 (481)
T 2o3j_A 257 EVAHAVGYDT---RIG---------------SKFLQASVGFGGSCFQKDVLSLVYLCESLNLPQVADYWQGVININN 315 (481)
T ss_dssp HHHHHHHTST---TTC---------------SSSCCCCSCCCSSSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHccCC---CCC---------------CCCCCCCCccCCccHHHHHHHHHHHHHHcCCCccchHHHHHHHHHH
Confidence 9999998652 110 112334 457789999999999999999999 999999887644
|
| >1mv8_A GMD, GDP-mannose 6-dehydrogenase; rossman fold, domain-swapped dimer, enzyme complex with COFA product, oxidoreductase; HET: SUC NAD GDX; 1.55A {Pseudomonas aeruginosa} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1mfz_A* 1muu_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=226.91 Aligned_cols=245 Identities=15% Similarity=0.116 Sum_probs=199.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-------------------cC-CcccCCHHHHhhcCcEEEEecCChhH
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-------------------EG-ANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-------------------~g-~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
.||+++|.+|+++||+|++|||++++++.+.+ .| +..+++++++++++|+||+|||++..
T Consensus 10 ~vG~~~A~~la~~G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~g~l~~t~~~~~~~~~aDvviiaVptp~~ 89 (436)
T 1mv8_A 10 YVGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSK 89 (436)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEEECCCCCBC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCHHHHHHHhCCCCCcCCCCHHHHHHhhcccCceEEeCCHHHHhccCCEEEEEcCCCcc
Confidence 38999999999999999999999999988876 23 55677888999999999999998875
Q ss_pred ---------HHHHhcCCccccccCCC---CCEEEEcCCCCchH-HHHHHHHHHhc-CCce-EeccCCCCHHhhhcCce--
Q psy764 61 ---------VLDAYDGSDGILKHAKP---GVIVIDSSTVDPQV-PQTLSNLAREK-QITF-LDAPVSGGTKAAQEATL-- 123 (286)
Q Consensus 61 ---------~~~v~~~~~~l~~~l~~---g~ivid~st~~p~~-~~~~~~~~~~~-g~~~-~~~pv~g~~~~a~~g~l-- 123 (286)
+++++.. +.+.+++ +++||++||+.|.+ .+.+.+.+.+. +..+ ++.++..+|.....|..
T Consensus 90 ~~~~~dl~~v~~v~~~---i~~~l~~~~~~~iVV~~Stv~~g~t~~~l~~~l~~~~g~~~~~~~~v~~~Pe~~~~G~~~~ 166 (436)
T 1mv8_A 90 KNGDLDLGYIETVCRE---IGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIK 166 (436)
T ss_dssp TTSSBCCHHHHHHHHH---HHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHH
T ss_pred cCCCcchHHHHHHHHH---HHHHhcccCCCcEEEEeCCcCCCchHHHHHHHHHHhcCcccCCcEEEEECcccccccccch
Confidence 8888764 7777888 99999999999998 67777777664 6554 45555566665555554
Q ss_pred ------EEEecCC-HhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy764 124 ------TFMVGGD-KSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVI 196 (286)
Q Consensus 124 ------~~~~gg~-~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~ 196 (286)
.+++|++ ++..++++++++.++.++++ ++++.+...|++.|.+.+.++.+++|+..++++.|+|++++.+++
T Consensus 167 ~~~~~~~iv~G~~~~~~~~~~~~l~~~~~~~v~~-~~~~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~ 245 (436)
T 1mv8_A 167 DYDFPPMTVIGELDKQTGDLLEEIYRELDAPIIR-KTVEVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVI 245 (436)
T ss_dssp HHHSCSCEEEEESSHHHHHHHHHHHTTSSSCEEE-EEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hccCCCEEEEEcCCHHHHHHHHHHHhccCCCEEc-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHh
Confidence 5777776 88889999999999986555 778999999999999999999999999999999999999999988
Q ss_pred HccCCCcccccccCCCCCccccCCCCCCCCC--CccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 197 NTSSGRCWSSEVYNPVPGVLSNVPASNNYNG--GFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 197 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~--~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
.... .+. + ..+.+.| +|...++.||..++.++++++|+++|+.++++++.+..
T Consensus 246 ~~~~--r~~-----~---------~~~~~~pg~g~gg~~~~kD~~~l~~~a~~~g~~~pl~~~v~~in~~~ 300 (436)
T 1mv8_A 246 CQDH--KLN-----L---------SRYYMRPGFAFGGSCLPKDVRALTYRASQLDVEHPMLGSLMRSNSNQ 300 (436)
T ss_dssp TTCT--TTT-----T---------SSTTCSCCSCCCSSSHHHHHHHHHHHHHHTTCCCTTGGGHHHHHHHH
T ss_pred cCCC--CCC-----C---------cccCCCCcccccCcCcHhhHHHHHHHHHHcCCCcHHHHHHHHHHhHh
Confidence 7421 010 0 0122233 57788999999999999999999999999999986654
|
| >1dlj_A UDP-glucose dehydrogenase; rossmann fold, ternary complex, crystallographic dimer, oxidoreductase; HET: NAI UGA; 1.80A {Streptococcus pyogenes} SCOP: a.100.1.4 c.2.1.6 c.26.3.1 PDB: 1dli_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=214.00 Aligned_cols=237 Identities=16% Similarity=0.125 Sum_probs=192.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC------------------cccCCHHHHhhcCcEEEEecCChh----
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA------------------NMALSLSTLASGAEFIISMLPASQ---- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~------------------~~~~s~~e~~~~adivi~~v~~~~---- 59 (286)
||+++|.+|++ ||+|++|||++++++.+.+.+. ..++++.++++++|+||+|||++.
T Consensus 11 vG~~~A~~La~-G~~V~~~d~~~~~~~~l~~~~~~i~e~~l~~~~~~~~~~l~~t~~~~~~~~~aDvviiavpt~~~~~~ 89 (402)
T 1dlj_A 11 VGLSLGVLLSL-QNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIATPTNYNSRI 89 (402)
T ss_dssp HHHHHHHHHTT-TSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEECCCCCEETTT
T ss_pred HHHHHHHHHhC-CCEEEEEECCHHHHHHHHcCCCCcCCCCHHHHHHhccCcEEEeCCHHHHhcCCCEEEEecCCCcccCC
Confidence 89999999999 9999999999999999877664 445678888999999999999874
Q ss_pred ------HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCce---EEEecCC
Q psy764 60 ------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATL---TFMVGGD 130 (286)
Q Consensus 60 ------~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l---~~~~gg~ 130 (286)
.+++++.. +.+ +.++++||++||+.|.+++++.+.+.+. .++.+|.+..+..+..+.+ .+++|++
T Consensus 90 ~~~dl~~v~~v~~~---i~~-l~~~~iVV~~ST~~~g~~~~l~~~~~~~--~v~~~Pe~~~~G~a~~~~~~~~riviG~~ 163 (402)
T 1dlj_A 90 NYFDTQHVETVIKE---VLS-VNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNLYPSRIIVSCE 163 (402)
T ss_dssp TEECCHHHHHHHHH---HHH-HCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHHSCSCEEEECC
T ss_pred CCccHHHHHHHHHH---HHh-hCCCCEEEEeCCCCccHHHHHHHHhCCC--eEEECCccccCcchhhcccCCCEEEEeCC
Confidence 58888864 777 8899999999999999999998876544 6778898887765543222 3778887
Q ss_pred H-------hhHHHHHHHHHHhc-C-C-eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Q psy764 131 K-------SSLEKAKPILKCMG-R-N-IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS 200 (286)
Q Consensus 131 ~-------~~~~~~~~ll~~~g-~-~-v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~ 200 (286)
+ +..+.+.++|..-+ . + ++++++++.++..|+++|.+.+.++++++|+..+|++.|+|++++.++++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~di~~ae~~Kl~~N~~~a~~ia~~nE~~~l~~~~Gid~~~v~~~~~~~~ 243 (402)
T 1dlj_A 164 ENDSPKVKADAEKFALLLKSAAKKNNVPVLIMGASEAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDD 243 (402)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHCSCSCCCEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST
T ss_pred CcccchhHHHHHHHHHHHhhhhccCCceEEecChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHhccCC
Confidence 6 56667777786532 2 2 57888899999999999999999999999999999999999999999998653
Q ss_pred CCcccccccCCCCCccccCCCCCCCCC--CccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 201 GRCWSSEVYNPVPGVLSNVPASNNYNG--GFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 201 ~~s~~~~~~~~~~~~~~~~~~~~~~~~--~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
++. ...+.| +|...++.||+.++.+.++ |+++|+++++.++.+..
T Consensus 244 ---ri~---------------~~~~~pg~g~gg~c~~kD~~~l~~~a~--~~~~~l~~~~~~~N~~~ 290 (402)
T 1dlj_A 244 ---RIG---------------MHYNNPSFGYGGYSLPKDTKQLLANYN--NIPQTLIEAIVSSNNVR 290 (402)
T ss_dssp ---TTC---------------SSSCCCCSSCCSSHHHHHHHHHHHHHT--TSSCSHHHHHHHHHHHH
T ss_pred ---CCC---------------cCCCCCCCccCCccHHhhHHHHHHHhc--CCChHHHHHHHHHHHHh
Confidence 111 111223 6788899999999998885 88999999998876544
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.7e-29 Score=218.72 Aligned_cols=270 Identities=13% Similarity=0.058 Sum_probs=204.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC--------------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG--------------ANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
||+++|..|+++||+|++|+|++++++.+.+.| +..++++.++++++|+||+|||. +.+++++.+
T Consensus 40 mG~alA~~La~~G~~V~l~~r~~~~~~~i~~~~~~~~~l~g~~l~~~i~~t~d~~ea~~~aDvVilaVp~-~~~~~vl~~ 118 (356)
T 3k96_A 40 WGTALALVLARKGQKVRLWSYESDHVDEMQAEGVNNRYLPNYPFPETLKAYCDLKASLEGVTDILIVVPS-FAFHEVITR 118 (356)
T ss_dssp HHHHHHHHHHTTTCCEEEECSCHHHHHHHHHHSSBTTTBTTCCCCTTEEEESCHHHHHTTCCEEEECCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCcccCCCCccCCCeEEECCHHHHHhcCCEEEECCCH-HHHHHHHHH
Confidence 799999999999999999999999999988754 24567899999999999999995 689999975
Q ss_pred CccccccCCCCCEEEEcCCC-CchH---HHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHH
Q psy764 68 SDGILKHAKPGVIVIDSSTV-DPQV---PQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKC 143 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~-~p~~---~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~ 143 (286)
+.+.++++++||++++. .+.+ .+.+.+.+....+.++++|.+........++..++.+.+.+..++++++|+.
T Consensus 119 ---i~~~l~~~~ivvs~~kGi~~~t~~~se~i~~~l~~~~~~vlsgP~~a~ev~~g~pt~~via~~~~~~~~~v~~lf~~ 195 (356)
T 3k96_A 119 ---MKPLIDAKTRIAWGTKGLAKGSRLLHEVVATELGQVPMAVISGPSLATEVAANLPTAVSLASNNSQFSKDLIERLHG 195 (356)
T ss_dssp ---HGGGCCTTCEEEECCCSCBTTTBCHHHHHHHHHCSCCEEEEESSCCHHHHHTTCCEEEEEEESCHHHHHHHHHHHCC
T ss_pred ---HHHhcCCCCEEEEEeCCCCcCccCHHHHHHHHcCCCCEEEEECccHHHHHHcCCCeEEEEecCCHHHHHHHHHHhCC
Confidence 88888899999998874 4443 1223333333456788999998877777778777888899999999999999
Q ss_pred hcCCeEecCCc-----------------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc----CCC
Q psy764 144 MGRNIVHCGDS-----------------GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS----SGR 202 (286)
Q Consensus 144 ~g~~v~~~g~~-----------------g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~----~~~ 202 (286)
.+.+++...++ |.+..+|+.+|...+.++.+++|+.++++++|.++++++++...+ ++.
T Consensus 196 ~~~rv~~~~Di~g~e~~galkNviaia~G~~~gl~~g~N~~aal~~~~l~E~~~l~~a~G~~~~t~~gl~g~gDl~~tc~ 275 (356)
T 3k96_A 196 QRFRVYKNDDMIGVELCGSVKNILAIATGISDGLKLGSNARAALITRGLTEMGRLVSVFGGKQETLTGLAGLGDLVLTCT 275 (356)
T ss_dssp SSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHH
T ss_pred CCeeEEEeCCHHHHHHHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHHHHHHHHHhCCChHhhcccchhhHHHHhcc
Confidence 88877766652 455557899999999999999999999999999999998653222 345
Q ss_pred cccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q psy764 203 CWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFL 282 (286)
Q Consensus 203 s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 282 (286)
|..++|+..+..+.+++..+........+..+.++.+.+.++++++|+++|+++++++++. ++.+....++.|
T Consensus 276 s~~sRN~~~G~~l~~g~~~~~~~~~~~~~~eG~~t~~~~~~la~~~~v~~Pi~~~v~~il~-------~~~~~~~~~~~l 348 (356)
T 3k96_A 276 DNQSRNRRFGLALGEGVDKKEAQQAIGQAIEGLYNTDQVHALAQKHAIEMPLTFQVHRILH-------EDLDPQQAVQEL 348 (356)
T ss_dssp CTTCHHHHHHHHHHHTCCHHHHHHHHCSCCSHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCCCHHHHHHHH
T ss_pred CCCCccHHHHHHHHCCCCHHHHHHHcCCccchHHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------CCCCHHHHHHHH
Confidence 6666665432222111000000000135668899999999999999999999999999875 344554544444
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.1e-25 Score=197.49 Aligned_cols=242 Identities=16% Similarity=0.169 Sum_probs=185.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------------------CCcccCCHHHHhhcCcEEEEecCChh--
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------------------GANMALSLSTLASGAEFIISMLPASQ-- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~adivi~~v~~~~-- 59 (286)
||.++|..|+++||+|+++|.++++++.+++. ..++++++.++++++|++|+|||+|.
T Consensus 32 VGLp~A~~~A~~G~~V~g~Did~~kV~~ln~G~~pi~Epgl~ell~~~~~~g~l~~tt~~~~ai~~ad~~~I~VpTP~~~ 111 (444)
T 3vtf_A 32 VGVVHAVGFALLGHRVVGYDVNPSIVERLRAGRPHIYEPGLEEALGRALSSGRLSFAESAEEAVAATDATFIAVGTPPAP 111 (444)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEECSSHHHHHHTSSEEEECCCCCBCT
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHHcCCeeEEcCHHHHHhcCCceEEEecCCCCC
Confidence 79999999999999999999999998887541 24567789999999999999999873
Q ss_pred -------HHHHHhcCCccccccCC---CCCEEEEcCCCCchHHHHHHHHHH-hc--C--CceEeccCCCCHHhhh----c
Q psy764 60 -------DVLDAYDGSDGILKHAK---PGVIVIDSSTVDPQVPQTLSNLAR-EK--Q--ITFLDAPVSGGTKAAQ----E 120 (286)
Q Consensus 60 -------~~~~v~~~~~~l~~~l~---~g~ivid~st~~p~~~~~~~~~~~-~~--g--~~~~~~pv~g~~~~a~----~ 120 (286)
.++.+... +.+.++ +|++||..||+.|.+++++...+. +. | +.+..+|.+-.+..+. .
T Consensus 112 d~~~Dl~~v~~a~~~---I~~~l~~~~~g~lVV~eSTVppGtte~~~~~~l~~~~~~~~f~v~~~PErl~eG~a~~d~~~ 188 (444)
T 3vtf_A 112 DGSADLRYVEAAARA---VGRGIRAKGRWHLVVVKSTVPPGTTEGLVARAVAEEAGGVKFSVASNPEFLREGSALEDFFK 188 (444)
T ss_dssp TSSBCCHHHHHHHHH---HHHHHHHHCSCCEEEECSCCCTTTTTTHHHHHHHTTTTTCCCEEEECCCCCCTTSHHHHHHS
T ss_pred CCCCCcHHHHHHHHH---HHHHHhhcCCCeEEEEeCCCCCchHHHHHHHHHHHhCCCCCceeecCcccccCCcccccccc
Confidence 24444442 555553 689999999999999998765443 32 1 3345567655444332 2
Q ss_pred CceEEEecC-CHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 121 ATLTFMVGG-DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 121 g~l~~~~gg-~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
.. .++.|+ ++.+.+.+.++++.+...+++++ +..|++.|++.|.+.+.+++.++|...+|+++|+|..++.+.++..
T Consensus 189 ~~-riViG~~~~~a~~~~~~ly~~~~~~~~~~~-~~~AE~~Kl~eN~~ravnIa~~NEla~ice~~GiDv~eV~~a~~~d 266 (444)
T 3vtf_A 189 PD-RIVIGAGDERAASFLLDVYKAVDAPKLVMK-PREAELVKYASNVFLALKISFANEVGLLAKRLGVDTYRVFEAVGLD 266 (444)
T ss_dssp CS-CEEEEESSHHHHHHHHHHTTTSCSCEEEEC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTS
T ss_pred CC-cEEEcCCCHHHHHHHHHHHhccCCCEEEec-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhccC
Confidence 22 345554 67788889999998887666654 5799999999999999999999999999999999999999998753
Q ss_pred CCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q psy764 200 SGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKR 264 (286)
Q Consensus 200 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 264 (286)
.- +....+.| .+||...|+.||..++...+++.|++.++.++++++-+.
T Consensus 267 ~r--ig~~~l~P--------------G~G~GG~CipkD~~~L~~~a~~~g~~~~li~a~~~iN~~ 315 (444)
T 3vtf_A 267 KR--IGRHYFGA--------------GLGFGGSCFPKDTLAFIRFGESLGLEMAISKAVLRVNEY 315 (444)
T ss_dssp TT--SCSTTCCC--------------SSCCCTTTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred CC--CCCCCCCC--------------CCCCCCcccCcCHHHHHHHHHhcCCCHHHHHhhHHHHHH
Confidence 21 11111122 245677899999999999999999999999999887654
|
| >1z82_A Glycerol-3-phosphate dehydrogenase; TM0378, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MSE NDP G3H G3P; 2.00A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.8e-25 Score=194.89 Aligned_cols=258 Identities=12% Similarity=0.103 Sum_probs=178.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC-----------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG-----------ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g-----------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||+++|.+|+++||+|++|||++++++.+.+.| +..++++.+ ++++|+||+|||+ +++++++.+
T Consensus 25 mG~ala~~L~~~G~~V~~~~r~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~-~~~aDvVil~vk~-~~~~~v~~~--- 99 (335)
T 1z82_A 25 WGTVFAQMLHENGEEVILWARRKEIVDLINVSHTSPYVEESKITVRATNDLEE-IKKEDILVIAIPV-QYIREHLLR--- 99 (335)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHSCBTTBTTCCCCSEEESCGGG-CCTTEEEEECSCG-GGHHHHHTT---
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHhCCcccCCCCeeeEEEeCCHHH-hcCCCEEEEECCH-HHHHHHHHH---
Confidence 899999999999999999999999999998776 466788888 8999999999995 799999975
Q ss_pred ccccCCCCCEEEEcCC-CCchHHHHHHHHHHhcC---CceEeccCCCCHHhhhcCce-EEEecCCHhhHHHHHHHHHHhc
Q psy764 71 ILKHAKPGVIVIDSST-VDPQVPQTLSNLAREKQ---ITFLDAPVSGGTKAAQEATL-TFMVGGDKSSLEKAKPILKCMG 145 (286)
Q Consensus 71 l~~~l~~g~ivid~st-~~p~~~~~~~~~~~~~g---~~~~~~pv~g~~~~a~~g~l-~~~~gg~~~~~~~~~~ll~~~g 145 (286)
+.+ ++++||++++ +.+.+.+.+.+.+.+.. ..++.+|....... .|.. .+..++++ +++++++|+..+
T Consensus 100 l~~---~~~~vv~~~nGi~~~~~~~l~~~~~~~~~~~~~~~~~P~~~~~~~--~g~~~~~~~g~~~--~~~~~~ll~~~g 172 (335)
T 1z82_A 100 LPV---KPSMVLNLSKGIEIKTGKRVSEIVEEILGCPYAVLSGPSHAEEVA--KKLPTAVTLAGEN--SKELQKRISTEY 172 (335)
T ss_dssp CSS---CCSEEEECCCCCCTTTCCCHHHHHHHHTCCCEEEEESSCCHHHHH--TTCCEEEEEEETT--HHHHHHHHCCSS
T ss_pred hCc---CCCEEEEEeCCCCCCccCcHHHHHHHHcCCceEEEECCccHHHHh--CCCceEEEEEehh--HHHHHHHhCCCC
Confidence 554 7899999984 56655555666555432 23344454432222 3443 23344433 789999999998
Q ss_pred CCeEecCCc---ch--------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc----CCCcc
Q psy764 146 RNIVHCGDS---GN--------------GQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS----SGRCW 204 (286)
Q Consensus 146 ~~v~~~g~~---g~--------------a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~----~~~s~ 204 (286)
.++++.++. +- ...+|+.+|.+...+..++.|+..++++.|++++++.++...+ +..++
T Consensus 173 ~~~~~~~di~~~~~~k~l~N~~~~~~g~~~g~~~~~n~~~a~~~~~~~E~~~la~a~G~~~~~~~~l~~~~~~~~t~~s~ 252 (335)
T 1z82_A 173 FRVYTCEDVVGVEIAGALKNVIAIAAGILDGFGGWDNAKAALETRGIYEIARFGMFFGADQKTFMGLAGIGDLMVTCNSR 252 (335)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHTSTTTHHHHHHHHHCT
T ss_pred EEEEecCchHHHHHHHHHHhHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHHHHHhCCChhhhcccccccceeeeccCc
Confidence 877776653 22 2334566888888899999999999999999999886542100 01122
Q ss_pred cccccCCCCCccccCCCCC-CCC----CCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHH
Q psy764 205 SSEVYNPVPGVLSNVPASN-NYN----GGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIY 279 (286)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~~-~~~----~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~ 279 (286)
.++++.....+. .+ .+. ..++.....||+.++.+++++.|+++|+.++++++++ ...+...++
T Consensus 253 ~~~n~~~~~~~~-----~g~~~~~~~~~~g~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~-------~~~~~~~~~ 320 (335)
T 1z82_A 253 YSRNRRFGELIA-----RGFNPLKLLESSNQVVEGAFTVKAVMKIAKENKIDMPISEEVYRVVY-------EGKPPLQSM 320 (335)
T ss_dssp TCHHHHHHHHHH-----HTCCHHHHHHTCSSCCTHHHHHHHHHHHHHHTTCCCHHHHHHHHHHH-------SCCCHHHHH
T ss_pred cCcHHHHHHHHh-----CCCCHHHHHHhcCCeeeHHHHHHHHHHHHHHhCCCCcHHHHHHHHHh-------CCCCHHHHH
Confidence 222211000010 11 000 0144556789999999999999999999999999874 344555555
Q ss_pred HHHh
Q psy764 280 EFLK 283 (286)
Q Consensus 280 ~~~~ 283 (286)
+.+.
T Consensus 321 ~~l~ 324 (335)
T 1z82_A 321 RDLM 324 (335)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
|
| >1yqg_A Pyrroline-5-carboxylate reductase; structural genomics, PSI, structure initiative, midwest center for structural genomic oxidoreductase; 1.90A {Neisseria meningitidis} SCOP: a.100.1.10 c.2.1.6 PDB: 2ag8_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=3.9e-24 Score=182.10 Aligned_cols=240 Identities=13% Similarity=0.121 Sum_probs=180.3
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||+.++.+|.++| ++|++|||++++.+.+.+. |+..+.++.+++ ++|+||+|+| +.++++++.. +.+ + ++
T Consensus 11 mG~~~a~~l~~~g~~~v~~~~r~~~~~~~~~~~~g~~~~~~~~~~~-~~D~vi~~v~-~~~~~~v~~~---l~~--~-~~ 82 (263)
T 1yqg_A 11 MAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPELH-SDDVLILAVK-PQDMEAACKN---IRT--N-GA 82 (263)
T ss_dssp HHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCCCC-TTSEEEECSC-HHHHHHHHTT---CCC--T-TC
T ss_pred HHHHHHHHHHHCCCCeEEEECCCHHHHHHHHHhcCCEEeCCHHHHh-cCCEEEEEeC-chhHHHHHHH---hcc--C-CC
Confidence 8999999999999 9999999999999998775 888888888888 9999999999 7899999875 554 4 89
Q ss_pred EEEEc-CCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecC-Ccc
Q psy764 80 IVIDS-STVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCG-DSG 155 (286)
Q Consensus 80 ivid~-st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g-~~g 155 (286)
+||++ +++.+ +.+.+.+. .+.+++++ +.+.+.....|...++.++ +++.+++++++|+.+|.++ +++ +..
T Consensus 83 ivv~~~~g~~~---~~l~~~~~-~~~~~v~~-~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~l~~~~g~~~-~~~~~~~ 156 (263)
T 1yqg_A 83 LVLSVAAGLSV---GTLSRYLG-GTRRIVRV-MPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLTV-WLDDEEK 156 (263)
T ss_dssp EEEECCTTCCH---HHHHHHTT-SCCCEEEE-ECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEEE-ECSSTTH
T ss_pred EEEEecCCCCH---HHHHHHcC-CCCcEEEE-cCCHHHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCCCEE-EeCChhh
Confidence 99998 55555 44555443 36678887 6777777777877777777 7889999999999999866 787 511
Q ss_pred hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcc-cccccCCCCCccccCCCCCCCCCCccch
Q psy764 156 NGQVAKL--CNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCW-SSEVYNPVPGVLSNVPASNNYNGGFKIS 232 (286)
Q Consensus 156 ~a~~~Kl--~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 232 (286)
.....-+ ..+.+.+..+.++.|+ +++.|++++++.+++..+..+++ .......-|. .+.++.++|+|++.
T Consensus 157 ~~~~~al~g~~~~~~~~~~~~l~e~---~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 229 (263)
T 1yqg_A 157 MHGITGISGSGPAYVFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFE----KLQKNVTSKGGTTH 229 (263)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHH----HHHHHTCCTTSHHH
T ss_pred ccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHH----HHHHhcCCCChhHH
Confidence 1111111 1233345566677777 89999999999999876644444 2222221121 12355678889888
Q ss_pred hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 233 LLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 233 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
.+.|++ ++.|++.|+.+++.+.|+++.+.|
T Consensus 230 ~~l~~l-------~~~~~~~~~~~a~~~~~~~~~~~~ 259 (263)
T 1yqg_A 230 EAVEAF-------RRHRVAEAISEGVCACVRRSQEME 259 (263)
T ss_dssp HHHHHH-------HHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-------HHCCHHHHHHHHHHHHHHHHHHHH
Confidence 877776 678999999999999999998876
|
| >1evy_A Glycerol-3-phosphate dehydrogenase; rossmann fold, oxidoreductase; HET: MYS; 1.75A {Leishmania mexicana} SCOP: a.100.1.6 c.2.1.6 PDB: 1evz_A* 1jdj_A* 1m66_A* 1m67_A* 1n1e_A* 1n1g_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4.4e-25 Score=196.80 Aligned_cols=262 Identities=14% Similarity=0.117 Sum_probs=179.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC--------------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG--------------ANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
||+++|.+|+++||+|++|||++++++.+.+.+ +..++++.++++++|+||+|||+ +++++++..
T Consensus 26 mG~~la~~L~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aDvVilav~~-~~~~~v~~~ 104 (366)
T 1evy_A 26 FGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-QFLRGFFEK 104 (366)
T ss_dssp HHHHHHHHHTTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSSEEECCCH-HHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccccccccccceeeeCCHHHHHcCCCEEEECCCh-HHHHHHHHH
Confidence 899999999999999999999999998887653 34567899999999999999994 788998874
Q ss_pred -CccccccCCC-CCEEEEcC-CCCchHHHHHHHHHHhc-C---CceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHH
Q psy764 68 -SDGILKHAKP-GVIVIDSS-TVDPQVPQTLSNLAREK-Q---ITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPI 140 (286)
Q Consensus 68 -~~~l~~~l~~-g~ivid~s-t~~p~~~~~~~~~~~~~-g---~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~l 140 (286)
++|+.+.+.+ +++||+++ ++.+.+.+.+.+.+.+. + ..++.+|.+............++.+++++.+++++++
T Consensus 105 ~~~gl~~~l~~~~~ivv~~~~gi~~~~~~~~~~~l~~~~~~~~~~v~~gp~~~~~~~~g~~~~~~~~~~~~~~~~~v~~l 184 (366)
T 1evy_A 105 SGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRLQRI 184 (366)
T ss_dssp HCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHHHHH
T ss_pred hHHHHHHhcCccCCEEEEECCcCCCccccCHHHHHHHHCCCCcEEEEeCCChHHHHHhCCceEEEEecCCHHHHHHHHHH
Confidence 3447677777 89999998 56665555555555443 3 2344555544333333444556667788899999999
Q ss_pred HHHh--cCCeEecCCc---chHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc--
Q psy764 141 LKCM--GRNIVHCGDS---GNGQV--------------AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS-- 199 (286)
Q Consensus 141 l~~~--g~~v~~~g~~---g~a~~--------------~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~-- 199 (286)
|+.. +.++++.++. ..+.. +|+.+|.+...+..++.|+..++++.|+|++++.++...+
T Consensus 185 l~~~g~g~~~~~~~di~~~~~~k~~~n~~~~~~~~~~~~~~~~n~~~~~~~~~~~E~~~la~a~Gi~~~~~~~~~~~~~~ 264 (366)
T 1evy_A 185 MSTGDRSFVCWATTDTVGCEVASAVKNVLAIGSGVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDL 264 (366)
T ss_dssp HSCTTSSEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCCTTTTSTTTHHHH
T ss_pred hcCCCCeEEEEEcCCchHHHHHHHHHhHHHHHHHHHhhccCCccHHHHHHHHHHHHHHHHHHHhCCCCccccccccchhh
Confidence 9999 7777777663 22323 3455888888999999999999999999987765431100
Q ss_pred --CCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q psy764 200 --SGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKR 264 (286)
Q Consensus 200 --~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 264 (286)
+..++.++++.....+..++.........++...+.||+.++.++++++|+++|+.+.++++++.
T Consensus 265 ~~~~~s~~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~~~~~~~v~~~a~~~gv~~P~~~~v~~~~~~ 331 (366)
T 1evy_A 265 QLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKAVAEGVATADPLMRLAKQLKVKMPLCHQIYEIVYK 331 (366)
T ss_dssp HHHHTCTTSHHHHHHHHHHTTCCHHHHHC---CCCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHS
T ss_pred eeeecCCCCchHHHHHHHhCCCCHHHHHHHcCCeeehHHHHHHHHHHHHHhCCCCcHHHHHHHHHHC
Confidence 01122222221111111000000000011334467899999999999999999999999998763
|
| >2ew2_A 2-dehydropantoate 2-reductase, putative; alpha-structure, alpha-beta structure, structural genomics, protein structure initiative; HET: MSE; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-24 Score=185.81 Aligned_cols=251 Identities=14% Similarity=0.090 Sum_probs=182.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccC------------CHHHHhh---cCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMAL------------SLSTLAS---GAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~------------s~~e~~~---~adivi~~v~~~~~~~~v~~ 66 (286)
||+.+|.+|.++||+|++|||++++.+.+.+.|..... +..++.+ ++|+||+|+|. .++++++.
T Consensus 14 ~G~~~a~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~~v~~-~~~~~v~~ 92 (316)
T 2ew2_A 14 MGSRLGIMLHQGGNDVTLIDQWPAHIEAIRKNGLIADFNGEEVVANLPIFSPEEIDHQNEQVDLIIALTKA-QQLDAMFK 92 (316)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCCEECGGGCCTTSCCCSEEEECSCH-HHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEECCHHHHHHHHhCCEEEEeCCCeeEecceeecchhhcccCCCCCEEEEEecc-ccHHHHHH
Confidence 89999999999999999999999999998877744321 3445554 89999999995 57888887
Q ss_pred CCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc----CCceEeccCCCC--HHhhhcCceEEE--ecCCHhhHHHHH
Q psy764 67 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSGG--TKAAQEATLTFM--VGGDKSSLEKAK 138 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~----g~~~~~~pv~g~--~~~a~~g~l~~~--~gg~~~~~~~~~ 138 (286)
. +.+.+.++++||++++..+ ..+.+.+.+.+. |..+.+++.++. +.....|.+.+. .+++++.+++++
T Consensus 93 ~---l~~~l~~~~~iv~~~~g~~-~~~~l~~~~~~~~vi~g~~~~~~~~~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~ 168 (316)
T 2ew2_A 93 A---IQPMITEKTYVLCLLNGLG-HEDVLEKYVPKENILVGITMWTAGLEGPGRVKLLGDGEIELENIDPSGKKFALEVV 168 (316)
T ss_dssp H---HGGGCCTTCEEEECCSSSC-THHHHTTTSCGGGEEEEEECCCCEEEETTEEEECSCCCEEEEESSGGGHHHHHHHH
T ss_pred H---HHHhcCCCCEEEEecCCCC-cHHHHHHHcCCccEEEEEeeeeeEEcCCCEEEEecCCcEEEeecCCCccHHHHHHH
Confidence 4 7778888999999987544 334555544433 222223334331 222345665554 356788899999
Q ss_pred HHHHHhcCCeEecCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCCH--HHHHHH
Q psy764 139 PILKCMGRNIVHCGDSGNGQVAKLCNNMLL---------------------GVTMMGVAEAMNLGVKLGMNA--KLLSDV 195 (286)
Q Consensus 139 ~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~---------------------~~~~~~~~Ea~~l~~~~Gl~~--~~~~~~ 195 (286)
++|+.++.++++.++.+.+...|++.|..+ ..+..++.|+..++++.|+++ +.+.+.
T Consensus 169 ~ll~~~g~~~~~~~d~~~~~~~Kl~~N~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~E~~~la~~~G~~~~~~~~~~~ 248 (316)
T 2ew2_A 169 DVFQKAGLNPSYSSNVRYSIWRKACVNGTLNGLCTILDCNIAEFGALPVSESLVKTLISEFAAVAEKEAIYLDQAEVYTH 248 (316)
T ss_dssp HHHHHTTCCEEECTTHHHHHHHHHHHHTTHHHHHHHHTCCHHHHHTSTTHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHhCCCCcEEchhHHHHHHHHHHHhhhHHHHHHHhCCcHHHHHhCHHHHHHHHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 999999998888888999999999999642 557789999999999999986 567777
Q ss_pred HHccCCCcccccccCCCCCccccCCCCCCC-CCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 196 INTSSGRCWSSEVYNPVPGVLSNVPASNNY-NGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 196 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~-~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
+..........+++ +.+ ..++ ..++.++ ..|++.++.++++++|+++|+.+.++++++....
T Consensus 249 ~~~~~~~~~~~~~~---~sm------~~d~~~~g~~~E-~~~~~~~~~~~a~~~gv~~P~~~~~~~~~~~~~~ 311 (316)
T 2ew2_A 249 IVQTYDPNGIGLHY---PSM------YQDLIKNHRLTE-IDYINGAVWRKGQKYNVATPFCAMLTQLVHGKEE 311 (316)
T ss_dssp HHHTTCTTTTTTSC---CHH------HHHHTTTCCCCS-GGGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHhccccCCCCC---cHH------HHHHHHcCCcch-HHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 76432111001111 111 1233 3445555 7899999999999999999999999999987754
|
| >2ahr_A Putative pyrroline carboxylate reductase; pyrroline reductase, proline biosynthesis, NAD(P protein, rossmann fold, doain swapping; HET: NAP; 2.15A {Streptococcus pyogenes} SCOP: a.100.1.10 c.2.1.6 PDB: 2amf_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.9e-23 Score=174.48 Aligned_cols=238 Identities=11% Similarity=0.131 Sum_probs=184.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||+.++.+|.+.|++|.+|||++++.+.+.+. |+..+.++.++++++|+||+|+| +..+++++.. + .+|++
T Consensus 14 mG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~D~Vi~~v~-~~~~~~v~~~---l----~~~~~ 85 (259)
T 2ahr_A 14 MASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKP---L----HFKQP 85 (259)
T ss_dssp HHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTT---S----CCCSC
T ss_pred HHHHHHHHHHhCCCeEEEECCCHHHHHHHHHHcCCEeeCCHHHHHhcCCEEEEEeC-cHhHHHHHHH---h----ccCCE
Confidence 79999999999999999999999999888765 88888899999999999999999 6788888764 3 37889
Q ss_pred EEEcC-CCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEecCCcchH
Q psy764 81 VIDSS-TVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHCGDSGNG 157 (286)
Q Consensus 81 vid~s-t~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~g~~g~a 157 (286)
||+++ +..+.. +.+.+ ..+..+++ ++.+.|.....|...++.++ +++.+++++++|+.+| .++++++....
T Consensus 86 vv~~~~~~~~~~---l~~~~-~~~~~~v~-~~p~~~~~~~~g~~~i~~~~~~~~~~~~~~~~ll~~~G-~~~~~~~~~~d 159 (259)
T 2ahr_A 86 IISMAAGISLQR---LATFV-GQDLPLLR-IMPNMNAQILQSSTALTGNALVSQELQARVRDLTDSFG-STFDISEKDFD 159 (259)
T ss_dssp EEECCTTCCHHH---HHHHH-CTTSCEEE-EECCGGGGGTCEEEEEEECTTCCHHHHHHHHHHHHTTE-EEEECCGGGHH
T ss_pred EEEeCCCCCHHH---HHHhc-CCCCCEEE-EcCCchHHHcCceEEEEcCCCCCHHHHHHHHHHHHhCC-CEEEecHHHcc
Confidence 99985 555543 33433 34567776 67777777777876677776 7889999999999999 58899987777
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcc-cccccCCCCCccccCCCCCCCCCCccchhH
Q psy764 158 QVAKLC--NNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCW-SSEVYNPVPGVLSNVPASNNYNGGFKISLL 234 (286)
Q Consensus 158 ~~~Kl~--~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~-~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 234 (286)
..+|+. .|.+.+.++.+++|+ +.+.|+|++.+++++..+..+++ ........|..+ .+..++|+|++..+
T Consensus 160 ~~~al~g~~~~~~~~~~~~la~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l----~~~~~~p~~~~~~~ 232 (259)
T 2ahr_A 160 TFTALAGSSPAYIYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHDF----IDAICSPGGTTIAG 232 (259)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHHH----HHHHCCTTSHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HHhCCCCChhHHHH
Confidence 888874 355566666777777 88999999999999988766565 232222112222 13446789999998
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 235 AKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 235 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
.||++ +.|++..+.+++.+.++++.+
T Consensus 233 ~~~l~-------~~g~~~~~~~a~~~~~~r~~~ 258 (259)
T 2ahr_A 233 LMELE-------RLGLTATVSSAIDKTIDKAKS 258 (259)
T ss_dssp HHHHH-------HHTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-------HCChHHHHHHHHHHHHHHHhc
Confidence 88874 678889999999999988865
|
| >3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.6e-24 Score=181.39 Aligned_cols=165 Identities=17% Similarity=0.273 Sum_probs=137.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH--------------HHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA--------------SQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~--------------~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
||+++|.+|+++||+|++|||++++ .+.+.+. +...+.++.+++++||+||+|||++ .+.+++.
T Consensus 30 mG~alA~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aDvVilavp~~-~~~~~~~ 108 (245)
T 3dtt_A 30 VGRTMAGALADLGHEVTIGTRDPKATLARAEPDAMGAPPFSQWLPEHPHVHLAAFADVAAGAELVVNATEGA-SSIAALT 108 (245)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHTCC-------CCHHHHGGGSTTCEEEEHHHHHHHCSEEEECSCGG-GHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhhhhhhhhhhhhcchhhhHHHhhcCceeccCHHHHHhcCCEEEEccCcH-HHHHHHH
Confidence 8999999999999999999999987 5555543 6667788999999999999999965 5555554
Q ss_pred CCccc-cccCCCCCEEEEcC-----------CCCchHHHHHHHHHHhc--------CCceEeccCCCCHHhhhcCceEEE
Q psy764 67 GSDGI-LKHAKPGVIVIDSS-----------TVDPQVPQTLSNLAREK--------QITFLDAPVSGGTKAAQEATLTFM 126 (286)
Q Consensus 67 ~~~~l-~~~l~~g~ivid~s-----------t~~p~~~~~~~~~~~~~--------g~~~~~~pv~g~~~~a~~g~l~~~ 126 (286)
. + .+.+ ++++|||+| |+.|.+.+.+.+.+.+. ++.++++|+++++..+..+++.++
T Consensus 109 ~---i~~~~l-~g~ivi~~s~~~~~~~G~~~t~~~~~~~~~~~~l~~~l~~~~vv~~~~~~~a~v~~~~~~a~~g~~~~~ 184 (245)
T 3dtt_A 109 A---AGAENL-AGKILVDIANPLDFSHGMPPTLNPVNTDSLGEQIQRTFPEAKVVKTLNTMNASLMVDPGRAAGGDHSVF 184 (245)
T ss_dssp H---HCHHHH-TTSEEEECCCCEECTTCSSCEESSCSSCCHHHHHHHHSTTSEEEECSTTSCHHHHHCGGGTGGGCCCEE
T ss_pred H---hhhhhc-CCCEEEECCCCCCCcCCccccccCCCCccHHHHHHHHCCCCeEEEeecccCHHHhcCccccCCCCeeEE
Confidence 3 4 4445 899999999 66776666666665553 788999999999998888888788
Q ss_pred ecC-CHhhHHHHHHHHHHhcCC-eEecCCcchHHHHHHHHHHHHHHH
Q psy764 127 VGG-DKSSLEKAKPILKCMGRN-IVHCGDSGNGQVAKLCNNMLLGVT 171 (286)
Q Consensus 127 ~gg-~~~~~~~~~~ll~~~g~~-v~~~g~~g~a~~~Kl~~n~~~~~~ 171 (286)
++| +++.+++++++|+.+|.+ ++++|+.|+|..+|+++|++...+
T Consensus 185 v~g~d~~~~~~v~~ll~~~g~~~~~~~G~~g~a~~~k~~~~~~~~l~ 231 (245)
T 3dtt_A 185 VSGNDAAAKAEVATLLKSLGHQDVIDLGDITTARGAEMLLPVWIRLW 231 (245)
T ss_dssp EECSCHHHHHHHHHHHHHTTCCCEEEEESGGGHHHHHTTHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHHHcCCCceeccCcHHHHHHhhhhHHHHHHHH
Confidence 766 589999999999999974 699999999999999999988755
|
| >2izz_A Pyrroline-5-carboxylate reductase 1; amino-acid biosynthesis, NADP, oxidoreductase, proline biosy; HET: NAD; 1.95A {Homo sapiens} PDB: 2ger_A 2gr9_A* 2gra_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-23 Score=182.00 Aligned_cols=255 Identities=12% Similarity=0.067 Sum_probs=178.2
Q ss_pred ccHHHHHHHHhCC----CcEEEEcCCch--HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQG----HDVIVYDKNTD--ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G----~~V~~~dr~~~--~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||+++|.+|.++| |+|++|||+++ +.+.+.+.|+..+.++.++++++|+||+||| ++++++++.+ +.+.+
T Consensus 33 mG~ala~~L~~~G~~~~~~V~v~~r~~~~~~~~~l~~~G~~~~~~~~e~~~~aDvVilav~-~~~~~~vl~~---l~~~l 108 (322)
T 2izz_A 33 LAFALAKGFTAAGVLAAHKIMASSPDMDLATVSALRKMGVKLTPHNKETVQHSDVLFLAVK-PHIIPFILDE---IGADI 108 (322)
T ss_dssp HHHHHHHHHHHTTSSCGGGEEEECSCTTSHHHHHHHHHTCEEESCHHHHHHHCSEEEECSC-GGGHHHHHHH---HGGGC
T ss_pred HHHHHHHHHHHCCCCCcceEEEECCCccHHHHHHHHHcCCEEeCChHHHhccCCEEEEEeC-HHHHHHHHHH---HHhhc
Confidence 8999999999999 89999999986 8888888899998899999999999999999 6799999874 77778
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhc--CCceEeccCCCCHHhhhcCceEEEecCC---HhhHHHHHHHHHHhcCCeEe
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREK--QITFLDAPVSGGTKAAQEATLTFMVGGD---KSSLEKAKPILKCMGRNIVH 150 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~--g~~~~~~pv~g~~~~a~~g~l~~~~gg~---~~~~~~~~~ll~~~g~~v~~ 150 (286)
.++++||++++..+. ..+.+.+.+. +..++.+ +...+.....|. .++++|+ ++.+++++++|+.+|..++
T Consensus 109 ~~~~ivvs~s~gi~~--~~l~~~l~~~~~~~~vv~~-~p~~p~~~~~g~-~v~~~g~~~~~~~~~~v~~ll~~~G~~~~- 183 (322)
T 2izz_A 109 EDRHIVVSCAAGVTI--SSIEKKLSAFRPAPRVIRC-MTNTPVVVREGA-TVYATGTHAQVEDGRLMEQLLSSVGFCTE- 183 (322)
T ss_dssp CTTCEEEECCTTCCH--HHHHHHHHTTSSCCEEEEE-ECCGGGGGTCEE-EEEEECTTCCHHHHHHHHHHHHTTEEEEE-
T ss_pred CCCCEEEEeCCCCCH--HHHHHHHhhcCCCCeEEEE-eCCcHHHHcCCe-EEEEeCCCCCHHHHHHHHHHHHhCCCEEE-
Confidence 889999999876553 3455555543 3344432 223444444555 6777776 7889999999999998654
Q ss_pred cCCcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccc-cCCCCCccccCCCCCCCCC
Q psy764 151 CGDSGNGQVAKL--CNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEV-YNPVPGVLSNVPASNNYNG 227 (286)
Q Consensus 151 ~g~~g~a~~~Kl--~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~~~ 227 (286)
+.+........+ ..|.+++.++.++.|+ +.+.|+|++.+.+++..+..+++.... ....|..+ .+..++|
T Consensus 184 ~~e~~~~~~~a~~g~gpa~~~~~~eala~a---~~~~Gl~~~~a~~l~~~~~~g~~~~~~~~~~~p~~l----~~~v~sp 256 (322)
T 2izz_A 184 VEEDLIDAVTGLSGSGPAYAFTALDALADG---GVKMGLPRRLAVRLGAQALLGAAKMLLHSEQHPGQL----KDNVSSP 256 (322)
T ss_dssp CCGGGHHHHHHHTTTHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHH----HHHHCCT
T ss_pred eCHHHHHHHHHHhcCHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH----HHhCCCC
Confidence 444233333333 3355566666667666 789999999999999887544442211 11111111 1223356
Q ss_pred CccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHH
Q psy764 228 GFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIY 279 (286)
Q Consensus 228 ~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~ 279 (286)
++++.. .++.+++.|++.++.+++.+.|+++.+.|.+++..+.-.
T Consensus 257 ~g~t~~-------~l~~l~~~g~~~~~~~av~~~~~ra~e~~~~~~~~~~~~ 301 (322)
T 2izz_A 257 GGATIH-------ALHVLESGGFRSLLINAVEASCIRTRELQSMADQEQVSP 301 (322)
T ss_dssp TSHHHH-------HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred CcHHHH-------HHHHHHHCCHHHHHHHHHHHHHHHHHHHhhccccccccH
Confidence 665544 445678899999999999999999999887765544433
|
| >1txg_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; oxidoreductase; 1.70A {Archaeoglobus fulgidus} SCOP: a.100.1.6 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-22 Score=179.04 Aligned_cols=241 Identities=17% Similarity=0.110 Sum_probs=174.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcC--CchHHHHHHHcCC-----------cccC--CHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK--NTDASQTLAKEGA-----------NMAL--SLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr--~~~~~~~l~~~g~-----------~~~~--s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
||+++|.+|+++||+|++||| ++++.+.+.+.|. ...+ ++.++++++|+||+|+|++ ++++++.
T Consensus 11 mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~-~~~~v~~ 89 (335)
T 1txg_A 11 MGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVSTD-GVLPVMS 89 (335)
T ss_dssp HHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCGG-GHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEccCCHHHHHHHHHhCcCcccCccccceEEecHHhHHHHHhcCCEEEEcCChH-HHHHHHH
Confidence 899999999999999999999 9999998887764 3455 7888889999999999964 7888887
Q ss_pred CCccccccCCCCCEEEEcC-CC---CchHHHHHHHHHHhc-CC----ceEeccCCCCHHhhhcC--ceEEEecCCHhhHH
Q psy764 67 GSDGILKHAKPGVIVIDSS-TV---DPQVPQTLSNLAREK-QI----TFLDAPVSGGTKAAQEA--TLTFMVGGDKSSLE 135 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~s-t~---~p~~~~~~~~~~~~~-g~----~~~~~pv~g~~~~a~~g--~l~~~~gg~~~~~~ 135 (286)
. +.+ +.++++||+++ ++ .|...+.+.+.+.+. +. .+...|.. ......+ +..++.+.+++.++
T Consensus 90 ~---i~~-l~~~~~vv~~~ng~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~p~~--~~~~~~g~~~~~~~~~~~~~~~~ 163 (335)
T 1txg_A 90 R---ILP-YLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAI--AREVAKRMPTTVVFSSPSESSAN 163 (335)
T ss_dssp H---HTT-TCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCC--HHHHHTTCCEEEEEECSCHHHHH
T ss_pred H---Hhc-CCCCCEEEEEcCcCccCCCCcCccHHHHHHHhcCCCCcEEEEECCCc--HHHHHccCCcEEEEEeCCHHHHH
Confidence 4 777 88899999998 44 445556666666553 33 12233322 1122223 33455556788899
Q ss_pred HHHHHHHHhcCCeEecCCc-----------------chHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Q psy764 136 KAKPILKCMGRNIVHCGDS-----------------GNGQVAKLC-----NNMLLGVTMMGVAEAMNLGVKLGMNAKLLS 193 (286)
Q Consensus 136 ~~~~ll~~~g~~v~~~g~~-----------------g~a~~~Kl~-----~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~ 193 (286)
+++++|+..+.++++.+++ |....+|+. +|.....+..++.|+..++++.|++++++.
T Consensus 164 ~~~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~E~~~la~~~G~~~~~~~ 243 (335)
T 1txg_A 164 KMKEIFETEYFGVEVTTDIIGTEITSALKNVYSIAIAWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAF 243 (335)
T ss_dssp HHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGG
T ss_pred HHHHHhCCCcEEEEecCchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcchhh
Confidence 9999999998888887775 333446888 888888899999999999999999988765
Q ss_pred ------HHHHccCCCcccccccCCCCCccccCCCCCCCCCCc--------------cchhHHHHHHHHHHHHhhcCCCch
Q psy764 194 ------DVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGF--------------KISLLAKDMKLAEDLANRCTAQTD 253 (286)
Q Consensus 194 ------~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f--------------~~~~~~kd~~~~~~~a~~~g~~~p 253 (286)
+.+..... + +++.. ...+.++| ...+..||+.++.++++++|+++|
T Consensus 244 ~~~~~~~~~~~~~~-~---~~~~~----------~~~~~~~~s~~~d~~~~~~~~~~~~E~~~~~~~~~~~a~~~gv~~P 309 (335)
T 1txg_A 244 GLSGFGDLIATFRG-G---RNGML----------GELLGKGLSIDEAMEELERRGVGVVEGYKTAEKAYRLSSKINADTK 309 (335)
T ss_dssp STTTHHHHHHTTTC-H---HHHHH----------HHHHHTTCCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCH
T ss_pred cccchhheeecccc-C---ccHHH----------HHHHhCCCCHHHHHHHhccCCceecchHHHHHHHHHHHHHcCCCCc
Confidence 44443322 1 11100 00011112 233556999999999999999999
Q ss_pred HHHHHHHHHH
Q psy764 254 LSKLATSIYK 263 (286)
Q Consensus 254 ~~~~~~~~~~ 263 (286)
+.+.++++++
T Consensus 310 ~~~~~~~~~~ 319 (335)
T 1txg_A 310 LLDSIYRVLY 319 (335)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 9999999876
|
| >1zej_A HBD-9, 3-hydroxyacyl-COA dehydrogenase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: PE8; 2.00A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-22 Score=174.40 Aligned_cols=179 Identities=13% Similarity=0.177 Sum_probs=143.0
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-------CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-------GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+||..+|.+|+ +||+|++|||++++++++.+. +++.++++++ +++||+||.|+|.+.+++.++.+ -+.
T Consensus 22 ~MG~~iA~~la-aG~~V~v~d~~~~~~~~~~~~l~~~~~~~i~~~~~~~~-~~~aDlVieavpe~~~vk~~l~~---~l~ 96 (293)
T 1zej_A 22 LMGRGIAIAIA-SKHEVVLQDVSEKALEAAREQIPEELLSKIEFTTTLEK-VKDCDIVMEAVFEDLNTKVEVLR---EVE 96 (293)
T ss_dssp HHHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHSCGGGGGGEEEESSCTT-GGGCSEEEECCCSCHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHH-cCCEEEEEECCHHHHHHHHHHHHHHHhCCeEEeCCHHH-HcCCCEEEEcCcCCHHHHHHHHH---HHh
Confidence 38999999999 999999999999999988776 7888888887 88999999999999998888764 233
Q ss_pred cCCCCCEEE-EcCCCCchHHHHHHH-HHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHhhHHHHHHHHHHhcCCe
Q psy764 74 HAKPGVIVI-DSSTVDPQVPQTLSN-LAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNI 148 (286)
Q Consensus 74 ~l~~g~ivi-d~st~~p~~~~~~~~-~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v 148 (286)
.+ ++.+++ |+||++|....+... .....|.+|++ |+... .+..++.| +++.++++.++++.+|+++
T Consensus 97 ~~-~~~IlasntSti~~~~~a~~~~~~~r~~G~Hf~~-Pv~~~-------~lveiv~g~~t~~~~~~~~~~l~~~lGk~~ 167 (293)
T 1zej_A 97 RL-TNAPLCSNTSVISVDDIAERLDSPSRFLGVHWMN-PPHVM-------PLVEIVISRFTDSKTVAFVEGFLRELGKEV 167 (293)
T ss_dssp TT-CCSCEEECCSSSCHHHHHTTSSCGGGEEEEEECS-STTTC-------CEEEEEECTTCCHHHHHHHHHHHHHTTCEE
T ss_pred cC-CCCEEEEECCCcCHHHHHHHhhcccceEeEEecC-ccccC-------CEEEEECCCCCCHHHHHHHHHHHHHcCCeE
Confidence 45 888885 788988875543221 11234778887 65442 34445544 8999999999999999999
Q ss_pred EecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcc
Q psy764 149 VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCW 204 (286)
Q Consensus 149 ~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~ 204 (286)
+++++. |++||++. ..++|++.++++ |+|++++.+++..+.+.+|
T Consensus 168 v~v~d~------fi~Nrll~----~~~~EA~~l~~~-Gv~~e~id~~~~~g~g~~~ 212 (293)
T 1zej_A 168 VVCKGQ------SLVNRFNA----AVLSEASRMIEE-GVRAEDVDRVWKHHLGLLY 212 (293)
T ss_dssp EEEESS------CHHHHHHH----HHHHHHHHHHHH-TCCHHHHHHHHHTTHHHHH
T ss_pred EEeccc------ccHHHHHH----HHHHHHHHHHHh-CCCHHHHHHHHHhcCCCCC
Confidence 999874 88888865 369999999999 9999999999987766555
|
| >1yj8_A Glycerol-3-phosphate dehydrogenase; SGPP, structural genomics, PSI; 2.85A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-22 Score=176.35 Aligned_cols=249 Identities=12% Similarity=0.046 Sum_probs=176.2
Q ss_pred ccHHHHHHHHhCC-------CcEEEEcCCch-----HHHHHHHc--------------CCcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQG-------HDVIVYDKNTD-----ASQTLAKE--------------GANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G-------~~V~~~dr~~~-----~~~~l~~~--------------g~~~~~s~~e~~~~adivi~~v 55 (286)
||+++|.+|+++| |+|++|||+++ +.+.+.+. ++..++++.++++++|+||+||
T Consensus 32 mG~alA~~L~~~G~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ea~~~aDvVilav 111 (375)
T 1yj8_A 32 WASAISKVVGTNAKNNYLFENEVRMWIRDEFVNGERMVDIINNKHENTKYLKGVPLPHNIVAHSDLASVINDADLLIFIV 111 (375)
T ss_dssp HHHHHHHHHHHHHHHCTTBCSCEEEECCSCC---CCHHHHHHHHCBCTTTSTTCBCCTTEEEESSTHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHHcCCccCCCCCeEEEEECChhhhhHHHHHHHHhcCcccccCCcccCcCCeEEECCHHHHHcCCCEEEEcC
Confidence 8999999999999 99999999998 88888653 2455678889999999999999
Q ss_pred CChhHHHHHhcCCccccc----cCCCCCEEEEcCCC-Cch--HHHHHHHHHHhc---CCceEeccCCCCHHhhhcCceEE
Q psy764 56 PASQDVLDAYDGSDGILK----HAKPGVIVIDSSTV-DPQ--VPQTLSNLAREK---QITFLDAPVSGGTKAAQEATLTF 125 (286)
Q Consensus 56 ~~~~~~~~v~~~~~~l~~----~l~~g~ivid~st~-~p~--~~~~~~~~~~~~---g~~~~~~pv~g~~~~a~~g~l~~ 125 (286)
| ++++++++.+ +.+ .+.++++||++++. .+. +.+.+.+.+.+. ...++.+|..............+
T Consensus 112 ~-~~~~~~vl~~---i~~~~~~~l~~~~ivvs~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~v~~g~~~~~~ 187 (375)
T 1yj8_A 112 P-CQYLESVLAS---IKESESIKIASHAKAISLTKGFIVKKNQMKLCSNYISDFLNIPCSALSGANIAMDVAMENFSEAT 187 (375)
T ss_dssp C-HHHHHHHHHH---HTC---CCCCTTCEEEECCCSCEEETTEEECHHHHHHHHSSSCEEEEECSCCHHHHHTTCCEEEE
T ss_pred C-HHHHHHHHHH---HhhhhhccCCCCCEEEEeCCccccCCccccCHHHHHHHHcCCCEEEEeCCchHHHHHhCCCeEEE
Confidence 9 4789999874 777 78889999999854 441 223333333332 22344455443333333455566
Q ss_pred EecCCHhhHHHHHHHHHHhcCCeEecCCc---chHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHc--C
Q psy764 126 MVGGDKSSLEKAKPILKCMGRNIVHCGDS---GNGQVA--------------KLCNNMLLGVTMMGVAEAMNLGVKL--G 186 (286)
Q Consensus 126 ~~gg~~~~~~~~~~ll~~~g~~v~~~g~~---g~a~~~--------------Kl~~n~~~~~~~~~~~Ea~~l~~~~--G 186 (286)
+.+++++.+++++++|+..+.++++.+++ .-+.++ |+.+|.....+..++.|+.+++++. |
T Consensus 188 ~~~~~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~l~N~~~~~~g~~~~~~~~~n~~~a~~~~~~~E~~~la~a~G~G 267 (375)
T 1yj8_A 188 IGGNDKDSLVIWQRVFDLPYFKINCVNETIEVEICGALKNIITLACGFCDGLNLPTNSKSAIIRNGINEMILFGKVFFQK 267 (375)
T ss_dssp EECSCHHHHHHHHHHHCBTTEEEEEESCSHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred EecCCHHHHHHHHHHhCCCCeEEEEeCCcHHHHHHHHHHHHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHHHHHhccC
Confidence 67778889999999999999888887774 233333 4558888899999999999999999 6
Q ss_pred CCHHHHHHH------HHccCCCcccccccCCCCCccccCCCC-CC-CC--C------CccchhHHHHHHHHHHHHhhcCC
Q psy764 187 MNAKLLSDV------INTSSGRCWSSEVYNPVPGVLSNVPAS-NN-YN--G------GFKISLLAKDMKLAEDLANRCTA 250 (286)
Q Consensus 187 l~~~~~~~~------~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~-~~--~------~f~~~~~~kd~~~~~~~a~~~g~ 250 (286)
++++++.++ +.+... + +++..+..+. . ++ ++ . .+...+..||+..+.++++++|+
T Consensus 268 ~~~~~~~~~~g~~dl~~t~~~-~---~~~~~~~~~~-----~~g~~~~~~d~~~~~~~g~~~E~~~~~~~v~~~a~~~gv 338 (375)
T 1yj8_A 268 FNENILLESCGFADIITSFLA-G---RNAKCSAEFI-----KSTPKKTWEELENEILKGQKLQGTVTLKYVYHMIKEKNM 338 (375)
T ss_dssp CCGGGGGSTTTHHHHHHHHSS-S---SHHHHHHHHH-----HHTTSSCHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTC
T ss_pred CCcchhhccccccceeEeeeC-C---ccHHHHHHHH-----hcCCCCCHHHHHHhhcCCcEeeHHHHHHHHHHHHHHhCC
Confidence 998877542 222211 1 1110000000 1 10 11 0 14566889999999999999999
Q ss_pred --CchHHHHHHHHHH
Q psy764 251 --QTDLSKLATSIYK 263 (286)
Q Consensus 251 --~~p~~~~~~~~~~ 263 (286)
++|+.+.++++++
T Consensus 339 ~~~~P~~~~v~~~~~ 353 (375)
T 1yj8_A 339 TNEFPLFTVLHKISF 353 (375)
T ss_dssp GGGCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHh
Confidence 9999999998865
|
| >1ks9_A KPA reductase;, 2-dehydropantoate 2-reductase; PANE, APBA, ketopantoate reductase, rossman fold, monomer, APO, oxidoreductase; 1.70A {Escherichia coli} SCOP: a.100.1.7 c.2.1.6 PDB: 1yon_A* 1yjq_A* 2ofp_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=6e-23 Score=177.01 Aligned_cols=239 Identities=13% Similarity=0.032 Sum_probs=170.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC---C----c-ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG---A----N-MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g---~----~-~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||+++|.+|.++||+|++|||++++.+.+...+ . . ..++ .+.++++|+||+|+|++ ++++++.+ +.+
T Consensus 11 ~G~~~a~~l~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~d~vi~~v~~~-~~~~v~~~---l~~ 85 (291)
T 1ks9_A 11 LGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTAND-PDFLATSDLLLVTLKAW-QVSDAVKS---LAS 85 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESC-HHHHHTCSEEEECSCGG-GHHHHHHH---HHT
T ss_pred HHHHHHHHHHhCCCCEEEEEcCccceeeEEEEcCCCceeeeeeeecC-ccccCCCCEEEEEecHH-hHHHHHHH---HHh
Confidence 899999999999999999999988765553332 1 0 2334 46778999999999975 68888864 777
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHh--cCCc----eEeccCCCCHHhhhcCceEEEe-cCCHhhHHHHHHHHHHhcC
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLARE--KQIT----FLDAPVSGGTKAAQEATLTFMV-GGDKSSLEKAKPILKCMGR 146 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~--~g~~----~~~~pv~g~~~~a~~g~l~~~~-gg~~~~~~~~~~ll~~~g~ 146 (286)
.+.++++||++++.. ...+.+.+.+.+ .|.. +.++| . +.....|.+.+.. +++++.+++++++|+.++.
T Consensus 86 ~l~~~~~vv~~~~g~-~~~~~l~~~~~~~~~g~~~~~~~~~~p-~--~~~~~~g~~~i~~~~~~~~~~~~~~~ll~~~g~ 161 (291)
T 1ks9_A 86 TLPVTTPILLIHNGM-GTIEELQNIQQPLLMGTTTHAARRDGN-V--IIHVANGITHIGPARQQDGDYSYLADILQTVLP 161 (291)
T ss_dssp TSCTTSCEEEECSSS-CTTGGGTTCCSCEEEEEECCEEEEETT-E--EEEEECCCEEEEESSGGGTTCTHHHHHHHTTSS
T ss_pred hCCCCCEEEEecCCC-CcHHHHHHhcCCeEEEEEeEccEEcCC-E--EEEecccceEEccCCCCcchHHHHHHHHHhcCC
Confidence 888899999986643 333344433332 1222 23344 2 3344567666654 5566778899999999999
Q ss_pred CeEecCCcchHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHHcCCCH--HHH----HHHHHcc-CC
Q psy764 147 NIVHCGDSGNGQVAKLCNNMLL------------------GVTMMGVAEAMNLGVKLGMNA--KLL----SDVINTS-SG 201 (286)
Q Consensus 147 ~v~~~g~~g~a~~~Kl~~n~~~------------------~~~~~~~~Ea~~l~~~~Gl~~--~~~----~~~~~~~-~~ 201 (286)
++++.++++.+...|++.|..+ ..+..++.|+..++++.|++. +.+ .+++..+ ..
T Consensus 162 ~~~~~~~~~~~~~~Kl~~n~~~n~~tal~~~~~g~~~~~~~~~~~~~~E~~~va~a~G~~~~~~~~~~~~~~~~~~~~~~ 241 (291)
T 1ks9_A 162 DVAWHNNIRAELWRKLAVNCVINPLTAIWNCPNGELRHHPQEIMQICEEVAAVIEREGHHTSAEDLRDYVMQVIDATAEN 241 (291)
T ss_dssp CEEECTTHHHHHHHHHHHHHHHHHHHHHTTCCGGGGGGCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHTTTC
T ss_pred CCeecHHHHHHHHHHHeeeeeecHHHHHHCCCchHHHhHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCCC
Confidence 9999999999999999999988 788899999999999999986 455 3333322 11
Q ss_pred CcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy764 202 RCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLM 266 (286)
Q Consensus 202 ~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 266 (286)
.|.+.+ ++..++.++. .++..++.++++++|+++|+.+.++++++...
T Consensus 242 ~ssm~~----------------d~~~g~~~e~-~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~~e 289 (291)
T 1ks9_A 242 ISSMLQ----------------DIRALRHTEI-DYINGFLLRRARAHGIAVPENTRLFEMVKRKE 289 (291)
T ss_dssp CCHHHH----------------HHHTTCCCSG-GGTHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CChHHH----------------HHHcCCccHH-HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh
Confidence 222111 1112222222 25678899999999999999999999998653
|
| >3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.5e-21 Score=165.22 Aligned_cols=190 Identities=13% Similarity=0.149 Sum_probs=154.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||++++.+|.++||+|++|||++++.+.+.+.|+... ++.++++++|+||+|+|. ..+++++.+ +.+.++++++|
T Consensus 23 mG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~aDvVi~av~~-~~~~~v~~~---l~~~l~~~~iv 97 (286)
T 3c24_A 23 MGARITRKIHDSAHHLAAIEIAPEGRDRLQGMGIPLT-DGDGWIDEADVVVLALPD-NIIEKVAED---IVPRVRPGTIV 97 (286)
T ss_dssp HHHHHHHHHHHSSSEEEEECCSHHHHHHHHHTTCCCC-CSSGGGGTCSEEEECSCH-HHHHHHHHH---HGGGSCTTCEE
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHhcCCCcC-CHHHHhcCCCEEEEcCCc-hHHHHHHHH---HHHhCCCCCEE
Confidence 7999999999999999999999999988887786654 678888999999999995 568888864 77778889999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCH------HhhhcCc---------eEEEecCCHhhHHHHHHHHHHhc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGT------KAAQEAT---------LTFMVGGDKSSLEKAKPILKCMG 145 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~------~~a~~g~---------l~~~~gg~~~~~~~~~~ll~~~g 145 (286)
||+|+..|... +.+ + ..+..|+ .+|+++++ .....|. +.+..+++++.+++++++|+.+|
T Consensus 98 v~~s~~~~~~~--l~~-~-~~~~~~v~~~P~~~~~~~~~~~~~~~~g~l~~~~~~~~i~~~~~~~~~~~~~v~~l~~~~G 173 (286)
T 3c24_A 98 LILDAAAPYAG--VMP-E-RADITYFIGHPCHPPLFNDETDPAARTDYHGGIAKQAIVCALMQGPEEHYAIGADICETMW 173 (286)
T ss_dssp EESCSHHHHHT--CSC-C-CTTSEEEEEEECCSCSSCCCCSHHHHTCSSSSSSCEEEEEEEEESCTHHHHHHHHHHHHHT
T ss_pred EECCCCchhHH--HHh-h-hCCCeEEecCCCCccccccccchhhccCcccccccceeeeeccCCCHHHHHHHHHHHHHhc
Confidence 99888764332 222 2 2367888 89999987 5555663 12335788999999999999999
Q ss_pred C---CeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHccC
Q psy764 146 R---NIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVINTSS 200 (286)
Q Consensus 146 ~---~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~~~~~ 200 (286)
. +++++++.+.+...|.++|.....++.++.|++..+.+ .|+|++.+.+++..+.
T Consensus 174 ~~~~~~~~v~~~~~~~~~~a~~n~~~~~~~~~~~eal~~~~~~~Gl~~~~~~~~~~~~~ 232 (286)
T 3c24_A 174 SPVTRTHRVTTEQLAILEPGLSEMVAMPFVETMVHAVDECADRYGIDRQAALDFMIGHL 232 (286)
T ss_dssp CSEEEEEECCHHHHHHHTTHHHHTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred CCcceEEEeChhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8 79999977777777999998888888899998876655 4999999999988653
|
| >2qyt_A 2-dehydropantoate 2-reductase; APC81190, porphyromonas gingi W83, structural genomics, PSI-2; HET: MSE; 2.15A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=99.84 E-value=1.6e-21 Score=170.15 Aligned_cols=244 Identities=9% Similarity=0.036 Sum_probs=167.6
Q ss_pred ccHHHHHHHHhC-----C-CcEEEEcCCchHHHHHHH-cCCcccC-------------CHHHHhhcCcEEEEecCChhHH
Q psy764 2 ISTLKLFFLQFQ-----G-HDVIVYDKNTDASQTLAK-EGANMAL-------------SLSTLASGAEFIISMLPASQDV 61 (286)
Q Consensus 2 ~G~~lA~~L~~~-----G-~~V~~~dr~~~~~~~l~~-~g~~~~~-------------s~~e~~~~adivi~~v~~~~~~ 61 (286)
||+++|.+|.++ | |+|++|+| +++.+.+.+ .|+.... +..+.++.+|+||+|||++ ++
T Consensus 19 mG~~~a~~L~~~~~~~~g~~~V~~~~r-~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vil~vk~~-~~ 96 (317)
T 2qyt_A 19 VGGYYGAMLALRAAATDGLLEVSWIAR-GAHLEAIRAAGGLRVVTPSRDFLARPTCVTDNPAEVGTVDYILFCTKDY-DM 96 (317)
T ss_dssp HHHHHHHHHHHHHHHTTSSEEEEEECC-HHHHHHHHHHTSEEEECSSCEEEECCSEEESCHHHHCCEEEEEECCSSS-CH
T ss_pred HHHHHHHHHHhCccccCCCCCEEEEEc-HHHHHHHHhcCCeEEEeCCCCeEEecceEecCccccCCCCEEEEecCcc-cH
Confidence 899999999999 9 99999999 888899988 6766543 4456678999999999975 57
Q ss_pred HHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHh----cCCceEeccCCC--CHHhhhcCceEEEe----cCCH
Q psy764 62 LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLARE----KQITFLDAPVSG--GTKAAQEATLTFMV----GGDK 131 (286)
Q Consensus 62 ~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~----~g~~~~~~pv~g--~~~~a~~g~l~~~~----gg~~ 131 (286)
++++.. +.+.+.++++||++++.. ...+.+.+.+.+ .|..++++++.+ .......+.+.++. +++.
T Consensus 97 ~~v~~~---i~~~l~~~~~iv~~~nG~-~~~~~l~~~l~~~~v~~g~~~~~a~~~~pg~~~~~~~g~~~~ig~~~~~~~~ 172 (317)
T 2qyt_A 97 ERGVAE---IRPMIGQNTKILPLLNGA-DIAERMRTYLPDTVVWKGCVYISARKSAPGLITLEADRELFYFGSGLPEQTD 172 (317)
T ss_dssp HHHHHH---HGGGEEEEEEEEECSCSS-SHHHHHTTTSCTTTBCEEEEEEEEEEEETTEEEEEEEEEEEEEECCSSSCCH
T ss_pred HHHHHH---HHhhcCCCCEEEEccCCC-CcHHHHHHHCCCCcEEEEEEEEEEEEcCCCEEEEcCCCceEEEcCCCCCCcC
Confidence 888864 777777889999987653 333455554443 244466777664 22223445443232 2346
Q ss_pred hhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHcCCCHH--
Q psy764 132 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLG-------------------VTMMGVAEAMNLGVKLGMNAK-- 190 (286)
Q Consensus 132 ~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~-------------------~~~~~~~Ea~~l~~~~Gl~~~-- 190 (286)
+.+ ++.++|+..+.++++.++++.+...|++.|..+. .+..++.|+..++++.|++++
T Consensus 173 ~~~-~~~~ll~~~g~~~~~~~di~~~~~~Kl~~N~~~~~~~al~g~~~g~~~~~~~~~~~~~~~E~~~v~~a~G~~~~~~ 251 (317)
T 2qyt_A 173 DEV-RLAELLTAAGIRAYNPTDIDWYIMKKFMMISVTATATAYFDKPIGSILTEHEPELLSLLEEVAELFRAKYGQVPDD 251 (317)
T ss_dssp HHH-HHHHHHHHTTCCEECCSCHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHCHHHHHHHHHHHHHHHHHHTSCCCSS
T ss_pred HHH-HHHHHHHHCCCCCEEchHHHHHHHHHHHHHHhhHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCChH
Confidence 667 8999999999988899999999999999998754 455899999999999999863
Q ss_pred HHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q psy764 191 LLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKR 264 (286)
Q Consensus 191 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 264 (286)
.+.+.+.... +....++ +.+. .|+..++.++. ...+.++.++++++|+++|+.+.++++++.
T Consensus 252 ~~~~~~~~~~--~~~~~~~---~sm~------~d~~~g~~~E~-~~~~g~~~~~a~~~gv~~P~~~~~~~~~~~ 313 (317)
T 2qyt_A 252 VVQQLLDKQR--KMPPEST---SSMH------SDFLQGGSTEV-ETLTGYVVREAEALRVDLPMYKRMYRELVS 313 (317)
T ss_dssp HHHHHHHHHH--HC------------------------------CTTTHHHHHHHHHTTCCCHHHHHHHHTTCC
T ss_pred HHHHHHHHHh--ccCCCCC---ChHH------HHHHcCCccCH-HHHhhHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 6666665421 1111111 1111 23333333221 112678999999999999999999988754
|
| >1x0v_A GPD-C, GPDH-C, glycerol-3-phosphate dehydrogenase [NAD+], cytoplasmic; two independent domains, GXGXXG motif, oxidoreductase; 2.30A {Homo sapiens} PDB: 1x0x_A* 1wpq_A* 2pla_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=9.4e-21 Score=167.96 Aligned_cols=253 Identities=11% Similarity=0.037 Sum_probs=171.3
Q ss_pred ccHHHHHHHHhCC-------CcEEEEcCCch-----HHHHHHHcC--------------CcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQG-------HDVIVYDKNTD-----ASQTLAKEG--------------ANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G-------~~V~~~dr~~~-----~~~~l~~~g--------------~~~~~s~~e~~~~adivi~~v 55 (286)
||+++|.+|+++| |+|++|||+++ +.+.+.+.+ +..++++.++++++|+||+||
T Consensus 19 mG~~~a~~l~~~g~~~~~~~~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aD~Vilav 98 (354)
T 1x0v_A 19 WGSAIAKIVGGNAAQLAQFDPRVTMWVFEEDIGGKKLTEIINTQHENVKYLPGHKLPPNVVAVPDVVQAAEDADILIFVV 98 (354)
T ss_dssp HHHHHHHHHHHHHHHCTTEEEEEEEECCCCBSSSSBHHHHHHHHSCCTTTSTTCCCCTTEEEESSHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHhcCCcccCCCCeEEEEEcChhhhhhHHHHHHHhcCcccccCCcccCccCeEEEcCHHHHHcCCCEEEEeC
Confidence 8999999999999 99999999998 888776532 344578889999999999999
Q ss_pred CChhHHHHHhcCCccccccCCCCCEEEEcCCCC---chHHHHHHHHHHhc-C--CceEeccCCCCHHhhhcCceEEEecC
Q psy764 56 PASQDVLDAYDGSDGILKHAKPGVIVIDSSTVD---PQVPQTLSNLAREK-Q--ITFLDAPVSGGTKAAQEATLTFMVGG 129 (286)
Q Consensus 56 ~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~---p~~~~~~~~~~~~~-g--~~~~~~pv~g~~~~a~~g~l~~~~gg 129 (286)
|+ +.+++++.+ +.+.+.++++||++++.. |.+.+.+.+.+.+. + ..++.+|.+............++.++
T Consensus 99 ~~-~~~~~v~~~---i~~~l~~~~ivv~~~~Gi~~~~~~~~~l~~~l~~~~~~~~~v~~gp~~a~~v~~g~~~~~~~~~~ 174 (354)
T 1x0v_A 99 PH-QFIGKICDQ---LKGHLKANATGISLIKGVDEGPNGLKLISEVIGERLGIPMSVLMGANIASEVADEKFCETTIGCK 174 (354)
T ss_dssp CG-GGHHHHHHH---HTTCSCTTCEEEECCCCBCSSSSSCCBHHHHHHHHHTCCEEEEECSCCHHHHHTTCCEEEEEECS
T ss_pred CH-HHHHHHHHH---HHhhCCCCCEEEEECCccCCCCCccccHHHHHHHHcCCCEEEEECCCcHHHHHhcCCceEEEEEC
Confidence 95 688998874 777788899999998743 23222333332222 2 22334444332222222244556677
Q ss_pred CHhhHHHHHHHHHHhcCCeEecCCcc---hHHHH--------------HHHHHHHHHHHHHHHHHHHHHHHHcCC---CH
Q psy764 130 DKSSLEKAKPILKCMGRNIVHCGDSG---NGQVA--------------KLCNNMLLGVTMMGVAEAMNLGVKLGM---NA 189 (286)
Q Consensus 130 ~~~~~~~~~~ll~~~g~~v~~~g~~g---~a~~~--------------Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl---~~ 189 (286)
+++.+++++++|+..+.++++.++.- -+..+ |+.+|.....+..++.|+.+++++.|+ ++
T Consensus 175 ~~~~~~~v~~ll~~~g~~~~~~~di~~~~~~k~~~N~~~~~~g~~~~~~~~~n~~~~~~~~~~~E~~~la~a~G~~~~~~ 254 (354)
T 1x0v_A 175 DPAQGQLLKELMQTPNFRITVVQEVDTVEICGALKNVVAVGAGFCDGLGFGDNTKAAVIRLGLMEMIAFAKLFCSGPVSS 254 (354)
T ss_dssp SHHHHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHSSSCCCG
T ss_pred CHHHHHHHHHHhCCCCEEEEEcCCchHhHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 88889999999999998888877642 33333 344888888899999999999999999 88
Q ss_pred HHHHH------HHHccCCCcccccccCCCCCccc-cCCCCCCCC---CCccchhHHHHHHHHHHHHhhcCC--CchHHHH
Q psy764 190 KLLSD------VINTSSGRCWSSEVYNPVPGVLS-NVPASNNYN---GGFKISLLAKDMKLAEDLANRCTA--QTDLSKL 257 (286)
Q Consensus 190 ~~~~~------~~~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~---~~f~~~~~~kd~~~~~~~a~~~g~--~~p~~~~ 257 (286)
+++.+ ++...+. + +++...+.+.. ++.. .+.. -.+...+..||+..+.++++++|+ ++|+.+.
T Consensus 255 ~~~~~~~g~~d~~~~~~~-~---~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~E~~~~~g~v~~~a~~~gv~~~~P~~~~ 329 (354)
T 1x0v_A 255 ATFLESCGVADLITTCYG-G---RNRKVAEAFARTGKSI-EQLEKELLNGQKLQGPETARELYSILQHKGLVDKFPLFMA 329 (354)
T ss_dssp GGGGSTTTHHHHHHHHHH-C---HHHHHHHHHHHHCCCH-HHHHHHHSTTCCCHHHHHHHHHHHHHHHHTCGGGSHHHHH
T ss_pred ccccccchHHHHHHhhcc-c---ccHHHHHHHHhcCCCH-HHHHHhhcCCcEeehHHHHHHHHHHHHHhCCCCCCCHHHH
Confidence 77643 2222111 1 11100001110 0000 0000 014556778999999999999999 9999999
Q ss_pred HHHHHH
Q psy764 258 ATSIYK 263 (286)
Q Consensus 258 ~~~~~~ 263 (286)
+++++.
T Consensus 330 v~~~~~ 335 (354)
T 1x0v_A 330 VYKVCY 335 (354)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 998875
|
| >3d1l_A Putative NADP oxidoreductase BF3122; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.19A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.7e-21 Score=164.81 Aligned_cols=192 Identities=15% Similarity=0.187 Sum_probs=148.7
Q ss_pred ccHHHHHHHHhCCCc-EEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHD-VIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||+.++..|.+.|++ |.+|||++++.+.+.+. |+..+.++.++++++|+||+|+|++ .+++++.+ +.+.+++++
T Consensus 21 mG~~~a~~l~~~g~~~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~Dvvi~av~~~-~~~~v~~~---l~~~~~~~~ 96 (266)
T 3d1l_A 21 LATNLAKALYRKGFRIVQVYSRTEESARELAQKVEAEYTTDLAEVNPYAKLYIVSLKDS-AFAELLQG---IVEGKREEA 96 (266)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSHHHHHHHHHHTTCEEESCGGGSCSCCSEEEECCCHH-HHHHHHHH---HHTTCCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEEeCCHHHHHHHHHHcCCceeCCHHHHhcCCCEEEEecCHH-HHHHHHHH---HHhhcCCCc
Confidence 799999999999999 99999999999988776 8888889999999999999999965 67888864 666778999
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEe-cCCHhhHHHHHHHHHHhcCCeEecCCcc---
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMV-GGDKSSLEKAKPILKCMGRNIVHCGDSG--- 155 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~-gg~~~~~~~~~~ll~~~g~~v~~~g~~g--- 155 (286)
+||++|+..|.+. +.+.+...+..+..+|+++.+.... +...+++ +++++.++.++++|+.+|.+++++++.+
T Consensus 97 ivv~~s~~~~~~~--l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~~v~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~ 173 (266)
T 3d1l_A 97 LMVHTAGSIPMNV--WEGHVPHYGVFYPMQTFSKQREVDF-KEIPFFIEASSTEDAAFLKAIASTLSNRVYDADSEQRKS 173 (266)
T ss_dssp EEEECCTTSCGGG--STTTCSSEEEEEECCCC---CCCCC-TTCCEEEEESSHHHHHHHHHHHHTTCSCEEECCHHHHHH
T ss_pred EEEECCCCCchHH--HHHHHHhccCcCCceecCCCchhhc-CCCeEEEecCCHHHHHHHHHHHHhcCCcEEEeCHHHHHH
Confidence 9999999888644 3333333345566778777543322 3334444 8899999999999999999999999654
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcc
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCW 204 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~ 204 (286)
.....|+++|... ++..++|+ ++++.|+|++.+.+++..+..+++
T Consensus 174 ~~~~~~l~~~~~~--~~~~~~ea--l~~~~Gl~~~~~~~l~~~~~~~~~ 218 (266)
T 3d1l_A 174 LHLAAVFTCNFTN--HMYALAAE--LLKKYNLPFDVMLPLIDETARKVH 218 (266)
T ss_dssp HHHHHHHHHHHHH--HHHHHHHH--HHHHTTCCGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHH--HHHHcCCCHHHHHHHHHHHHHHHH
Confidence 5678899999853 34556776 678999999999999887644333
|
| >3gt0_A Pyrroline-5-carboxylate reductase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.00A {Bacillus cereus atcc 14579} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.4e-19 Score=152.54 Aligned_cols=219 Identities=12% Similarity=0.064 Sum_probs=136.7
Q ss_pred ccHHHHHHHHhCCC----cEEEEcCCchHHHHHHH-cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGH----DVIVYDKNTDASQTLAK-EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~----~V~~~dr~~~~~~~l~~-~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||++++++|.++|| +|++|||++++.+.+.+ .|+..+.++.++++++|+||+|+| ++++++++.+ +.+.++
T Consensus 13 mG~~~a~~l~~~g~~~~~~V~~~~r~~~~~~~~~~~~g~~~~~~~~e~~~~aDvVilav~-~~~~~~v~~~---l~~~l~ 88 (247)
T 3gt0_A 13 MGMAMIGGMINKNIVSSNQIICSDLNTANLKNASEKYGLTTTTDNNEVAKNADILILSIK-PDLYASIINE---IKEIIK 88 (247)
T ss_dssp HHHHHHHHHHHTTSSCGGGEEEECSCHHHHHHHHHHHCCEECSCHHHHHHHCSEEEECSC-TTTHHHHC------CCSSC
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEeCCHHHHHHHHHHhCCEEeCChHHHHHhCCEEEEEeC-HHHHHHHHHH---HHhhcC
Confidence 89999999999998 99999999999999875 499999999999999999999997 5789999875 777888
Q ss_pred CCCEEEEc-CCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcCceEEEe--cCCHhhHHHHHHHHHHhcCCeEecC
Q psy764 77 PGVIVIDS-STVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMV--GGDKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 77 ~g~ivid~-st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~--gg~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
++++||.+ ++++.. .+.+.+. .+..++. .| +.|.....|...++. +++++.+++++++|+.+|. +++++
T Consensus 89 ~~~~vvs~~~gi~~~---~l~~~~~-~~~~~v~~~p--~~p~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~~G~-~~~~~ 161 (247)
T 3gt0_A 89 NDAIIVTIAAGKSIE---STENAFN-KKVKVVRVMP--NTPALVGEGMSALCPNEMVTEKDLEDVLNIFNSFGQ-TEIVS 161 (247)
T ss_dssp TTCEEEECSCCSCHH---HHHHHHC-SCCEEEEEEC--CGGGGGTCEEEEEEECTTCCHHHHHHHHHHHGGGEE-EEECC
T ss_pred CCCEEEEecCCCCHH---HHHHHhC-CCCcEEEEeC--ChHHHHcCceEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeC
Confidence 89998855 444433 3444442 3334442 23 333334445544444 3678999999999999998 67776
Q ss_pred CcchHHHHHHH--HHHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCc
Q psy764 153 DSGNGQVAKLC--NNMLLGVTMMGVAEAMNL-GVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGF 229 (286)
Q Consensus 153 ~~g~a~~~Kl~--~n~~~~~~~~~~~Ea~~l-~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f 229 (286)
+...-....+. .+.+.+. +.|++.. +.+.|+|++++++++..+..+++.+-.... ..+..+.+...+|++
T Consensus 162 e~~~d~~~a~~g~gpa~~~~----~~eal~~a~~~~Gl~~~~a~~~~~~~~~gs~~~~~~~~---~~p~~l~~~v~spgG 234 (247)
T 3gt0_A 162 EKLMDVVTSVSGSSPAYVYM----IIEAMADAAVLDGMPRNQAYKFAAQAVLGSAKMVLETG---IHPGELKDMVCSPGG 234 (247)
T ss_dssp GGGHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHSC---C--------------
T ss_pred HHHccHHHHHhccHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHcC---CCHHHHHHhcCCCCc
Confidence 53222222222 2334443 4455444 889999999999999988666664421111 112223456678888
Q ss_pred cchhHHHHH
Q psy764 230 KISLLAKDM 238 (286)
Q Consensus 230 ~~~~~~kd~ 238 (286)
++....+.+
T Consensus 235 ~t~~gl~~l 243 (247)
T 3gt0_A 235 TTIEAVATL 243 (247)
T ss_dssp ---------
T ss_pred hHHHHHHHH
Confidence 776655444
|
| >3tri_A Pyrroline-5-carboxylate reductase; amino acid biosynthesis, oxidoreductase; HET: NAP; 2.50A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.1e-20 Score=159.31 Aligned_cols=243 Identities=11% Similarity=0.085 Sum_probs=176.2
Q ss_pred ccHHHHHHHHhCCC---cEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc-CC
Q psy764 2 ISTLKLFFLQFQGH---DVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH-AK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~---~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~-l~ 76 (286)
||++++.+|.++|+ +|++|||++++.+.+.+. |+..+.++.++++++|+||+||| ++.+++++.+ +.+. ++
T Consensus 14 mG~aia~~l~~~g~~~~~V~v~dr~~~~~~~l~~~~gi~~~~~~~~~~~~aDvVilav~-p~~~~~vl~~---l~~~~l~ 89 (280)
T 3tri_A 14 MARNIVVGLIANGYDPNRICVTNRSLDKLDFFKEKCGVHTTQDNRQGALNADVVVLAVK-PHQIKMVCEE---LKDILSE 89 (280)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEECSSSHHHHHHHHTTCCEEESCHHHHHSSCSEEEECSC-GGGHHHHHHH---HHHHHHT
T ss_pred HHHHHHHHHHHCCCCCCeEEEEeCCHHHHHHHHHHcCCEEeCChHHHHhcCCeEEEEeC-HHHHHHHHHH---HHhhccC
Confidence 89999999999999 999999999999999876 99999999999999999999998 5789999875 7776 77
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcCceEEEecC---CHhhHHHHHHHHHHhcCCeEecC
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
++++||.++...+. ..+.+.+. .+.+++. +| ..|.....|. +.++.+ +++.++.++++|+.+|+ ++++.
T Consensus 90 ~~~iiiS~~agi~~--~~l~~~l~-~~~~vvr~mP--n~p~~v~~g~-~~l~~~~~~~~~~~~~v~~l~~~iG~-~~~v~ 162 (280)
T 3tri_A 90 TKILVISLAVGVTT--PLIEKWLG-KASRIVRAMP--NTPSSVRAGA-TGLFANETVDKDQKNLAESIMRAVGL-VIWVS 162 (280)
T ss_dssp TTCEEEECCTTCCH--HHHHHHHT-CCSSEEEEEC--CGGGGGTCEE-EEEECCTTSCHHHHHHHHHHHGGGEE-EEECS
T ss_pred CCeEEEEecCCCCH--HHHHHHcC-CCCeEEEEec--CChHHhcCcc-EEEEeCCCCCHHHHHHHHHHHHHCCC-eEEEC
Confidence 78788876554442 44555553 3344543 34 3344444444 444544 47889999999999998 55553
Q ss_pred -C--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCccccccc-CCCCCccccCCCCCCCCCC
Q psy764 153 -D--SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVY-NPVPGVLSNVPASNNYNGG 228 (286)
Q Consensus 153 -~--~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~-~~~~~~~~~~~~~~~~~~~ 228 (286)
+ .....++.-+.+.+++.++.++.|+ +.+.|+++++.++++..+..++..+-.. ..-|.. +.+...+|+
T Consensus 163 ~E~~~d~~talsgsgpa~~~~~~eal~~a---~v~~Gl~~~~a~~l~~~t~~G~a~~~~~~~~~p~~----l~~~v~spg 235 (280)
T 3tri_A 163 SEDQIEKIAALSGSGPAYIFLIMEALQEA---AEQLGLTKETAELLTEQTVLGAARMALETEQSVVQ----LRQFVTSPG 235 (280)
T ss_dssp SHHHHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHTCSSCHHH----HHHHHCCTT
T ss_pred CHHHhhHHHHHhccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHH----HHHhccCCC
Confidence 3 2333444444566778888888888 7899999999999988764333322110 011111 123445677
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 229 FKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 229 f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
+++.. .++..++.|++..+.+++...++++.+.|
T Consensus 236 GtT~~-------~l~~le~~g~~~~~~~av~aa~~r~~el~ 269 (280)
T 3tri_A 236 GTTEQ-------AIKVLESGNLRELFIKALTAAVNRAKELS 269 (280)
T ss_dssp SHHHH-------HHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHH-------HHHHHHHCChHHHHHHHHHHHHHHHHHHH
Confidence 76665 66777889999999999999999998765
|
| >2rcy_A Pyrroline carboxylate reductase; malaria, structural genomics, pyrroline reductase, oxidoredu structural genomics consortium, SGC; HET: NAP; 2.30A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-20 Score=157.05 Aligned_cols=234 Identities=10% Similarity=0.093 Sum_probs=163.4
Q ss_pred ccHHHHHHHHhCC----CcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQG----HDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G----~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||++++.+|.++| ++|++|||++++ .|+..+.++.++++++|+||+|+| ++++++++.+ +.+.+++
T Consensus 15 mG~~~a~~l~~~g~~~~~~v~~~~~~~~~------~g~~~~~~~~~~~~~~D~vi~~v~-~~~~~~v~~~---l~~~l~~ 84 (262)
T 2rcy_A 15 MGSALAHGIANANIIKKENLFYYGPSKKN------TTLNYMSSNEELARHCDIIVCAVK-PDIAGSVLNN---IKPYLSS 84 (262)
T ss_dssp HHHHHHHHHHHHTSSCGGGEEEECSSCCS------SSSEECSCHHHHHHHCSEEEECSC-TTTHHHHHHH---SGGGCTT
T ss_pred HHHHHHHHHHHCCCCCCCeEEEEeCCccc------CceEEeCCHHHHHhcCCEEEEEeC-HHHHHHHHHH---HHHhcCC
Confidence 8999999999999 799999999887 588888899999999999999999 5688998874 6666644
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhc--CCceEeccCCCCHHhhhcCceEEEecC---CHhhHHHHHHHHHHhcCCeEecC
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREK--QITFLDAPVSGGTKAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~--g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
+.+|.+++++.+.. +.+.+... .++++. +.|.....| .++++++ +++.+++++++|+.+|. +++++
T Consensus 85 ~~vv~~~~gi~~~~---l~~~~~~~~~~v~~~p----~~p~~~~~g-~~~~~~~~~~~~~~~~~~~~ll~~~G~-~~~~~ 155 (262)
T 2rcy_A 85 KLLISICGGLNIGK---LEEMVGSENKIVWVMP----NTPCLVGEG-SFIYCSNKNVNSTDKKYVNDIFNSCGI-IHEIK 155 (262)
T ss_dssp CEEEECCSSCCHHH---HHHHHCTTSEEEEEEC----CGGGGGTCE-EEEEEECTTCCHHHHHHHHHHHHTSEE-EEECC
T ss_pred CEEEEECCCCCHHH---HHHHhCCCCcEEEECC----ChHHHHcCC-eEEEEeCCCCCHHHHHHHHHHHHhCCC-EEEeC
Confidence 44666677777753 33334321 123331 333333456 5667666 67889999999999997 88998
Q ss_pred CcchHHHHHH--HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccc-cCCCCCccccCCCCCCC-CCC
Q psy764 153 DSGNGQVAKL--CNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEV-YNPVPGVLSNVPASNNY-NGG 228 (286)
Q Consensus 153 ~~g~a~~~Kl--~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~-~~~~~~~~~~~~~~~~~-~~~ 228 (286)
+.......++ +.|.+.+..+.++.|+ +++.|++++.+.+++..+...++.... ....|.++ .+.+ .++
T Consensus 156 ~~~~~~~~a~~~~~~~~~~~~~~al~~~---~~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-----~d~~~~~~ 227 (262)
T 2rcy_A 156 EKDMDIATAISGCGPAYVYLFIESLIDA---GVKNGLSRELSKNLVLQTIKGSVEMVKKSDQPVQQL-----KDNIVSPG 227 (262)
T ss_dssp GGGHHHHHHHTTSHHHHHHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHCSSCHHHH-----HHHHCCTT
T ss_pred HHHccHHHHHHccHHHHHHHHHHHHHHH---HHHcCCCHHHHHHHHHHHHHHHHHHHHhcCCCHHHH-----HHhcCCCC
Confidence 7555555555 4466666666666666 789999999999988765433321110 01112222 2222 355
Q ss_pred ccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcC
Q psy764 229 FKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 229 f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
+++.... +..++.|++..+.+++.+.|+++.+.+
T Consensus 228 ~t~~~~l-------~~l~~~~~~~~~~~a~~~~~~r~~~~~ 261 (262)
T 2rcy_A 228 GITAVGL-------YSLEKNSFKYTVMNAVEAACEKSKAMG 261 (262)
T ss_dssp SHHHHHH-------HHHHHTTHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHH-------HHHHHCChHHHHHHHHHHHHHHHHHhc
Confidence 6655543 444666999999999999999998765
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=6.2e-18 Score=147.15 Aligned_cols=162 Identities=15% Similarity=0.190 Sum_probs=135.1
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHcCC--cccCCHHH-HhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKEGA--NMALSLST-LASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~--~~~~s~~e-~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||+++|+.|.++|+ +|++|||++++.+.+.+.|+ ..+.++.+ ++++||+||+|||. ..+.+++.+ +.+.++
T Consensus 44 mG~slA~~l~~~G~~~~V~~~dr~~~~~~~a~~~G~~~~~~~~~~~~~~~~aDvVilavp~-~~~~~vl~~---l~~~l~ 119 (314)
T 3ggo_A 44 MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIAKK---LSYILS 119 (314)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCTTGGGGGCCSEEEECSCG-GGHHHHHHH---HHHHSC
T ss_pred HHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHCCCcchhcCCHHHHhhccCCEEEEeCCH-HHHHHHHHH---HhhccC
Confidence 89999999999999 99999999999998888887 45678888 89999999999995 567888864 778889
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCC----HHhhh----cCceEEEec---CCHhhHHHHHHHHHHh
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGG----TKAAQ----EATLTFMVG---GDKSSLEKAKPILKCM 144 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~----~~~a~----~g~l~~~~g---g~~~~~~~~~~ll~~~ 144 (286)
++++|+|++++.+...+.+.+.+.. +|++ .|++|+ +..+. .+..++++. ++++.+++++++|+.+
T Consensus 120 ~~~iv~d~~Svk~~~~~~~~~~l~~---~~v~~hPm~G~e~sG~~~A~~~Lf~g~~~il~~~~~~~~~~~~~v~~l~~~~ 196 (314)
T 3ggo_A 120 EDATVTDQGSVKGKLVYDLENILGK---RFVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDV 196 (314)
T ss_dssp TTCEEEECCSCCTHHHHHHHHHHGG---GEECEEECCCCCCCSGGGCCTTTTTTCEEEECCCTTSCHHHHHHHHHHHHHT
T ss_pred CCcEEEECCCCcHHHHHHHHHhcCC---CEEecCcccCCcccchhhhhhhhhcCCEEEEEeCCCCCHHHHHHHHHHHHHc
Confidence 9999999999998888787776643 7886 698884 44443 566677774 5789999999999999
Q ss_pred cCCeEecCCcchHHHHHHHHHHHHHH
Q psy764 145 GRNIVHCGDSGNGQVAKLCNNMLLGV 170 (286)
Q Consensus 145 g~~v~~~g~~g~a~~~Kl~~n~~~~~ 170 (286)
|.+++++++......+++++.+....
T Consensus 197 G~~v~~~~~~~hD~~~a~~s~lph~~ 222 (314)
T 3ggo_A 197 GGVVEYMSPELHDYVFGVVSHLPHAV 222 (314)
T ss_dssp TCEEEECCHHHHHHHHHHHTHHHHHH
T ss_pred CCEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 99999999878888888887665543
|
| >1bg6_A N-(1-D-carboxylethyl)-L-norvaline dehydrogenase; L) stereospecific opine dehydrogenase, oxidoreductase; 1.80A {Arthrobacter SP} SCOP: a.100.1.5 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.5e-18 Score=153.85 Aligned_cols=254 Identities=13% Similarity=0.144 Sum_probs=160.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CC--------------cccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GA--------------NMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~--------------~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
||+.+|.+|.++|++|++|||++++.+.+.+. +. ...++++++++++|+||+|+|.+ ..++++.
T Consensus 15 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vi~~v~~~-~~~~~~~ 93 (359)
T 1bg6_A 15 GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPAI-HHASIAA 93 (359)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSCGG-GHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHhcCCeEEeccccccccccceecCCHHHHHhcCCEEEEeCCch-HHHHHHH
Confidence 79999999999999999999999999888765 32 35678889899999999999975 5677776
Q ss_pred CCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcC---CceEe---ccCCCCHHhhhcCceEEE-------e-----c
Q psy764 67 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQ---ITFLD---APVSGGTKAAQEATLTFM-------V-----G 128 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g---~~~~~---~pv~g~~~~a~~g~l~~~-------~-----g 128 (286)
. +.+.+.++++||++.+..+.. .++.+.+.+.+ +.|++ .|+.+...+ .+.+.++ + +
T Consensus 94 ~---l~~~l~~~~~vv~~~~~~~~~-~~~~~~l~~~~~~~v~~~~~~~~~~~~~~~g--pg~v~~~~~~~~~~~g~~~~~ 167 (359)
T 1bg6_A 94 N---IASYISEGQLIILNPGATGGA-LEFRKILRENGAPEVTIGETSSMLFTCRSER--PGQVTVNAIKGAMDFACLPAA 167 (359)
T ss_dssp H---HGGGCCTTCEEEESSCCSSHH-HHHHHHHHHTTCCCCEEEEESSCSEEEECSS--TTEEEEEEECSCEEEEEESGG
T ss_pred H---HHHhCCCCCEEEEcCCCchHH-HHHHHHHHhcCCCCeEEEEecCCcEEEEeCC--CCEEEEEEeecceEEEecccc
Confidence 4 777888999999985534433 34555555554 44655 565543221 1222221 1 3
Q ss_pred CCHhhHHHHHHHHHHhc--CCe-----------EecCC--cchHHHHH------HH---HHHHHHHHHHHHHHHHHHHHH
Q psy764 129 GDKSSLEKAKPILKCMG--RNI-----------VHCGD--SGNGQVAK------LC---NNMLLGVTMMGVAEAMNLGVK 184 (286)
Q Consensus 129 g~~~~~~~~~~ll~~~g--~~v-----------~~~g~--~g~a~~~K------l~---~n~~~~~~~~~~~Ea~~l~~~ 184 (286)
++++.++.++++|..+. .++ ++.+. .+.+...| +- .+.....+..++.|+..++++
T Consensus 168 ~~~~~~~~l~~~~~~~~~~~di~~k~~~nvn~~~n~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~va~a 247 (359)
T 1bg6_A 168 KAGWALEQIGSVLPQYVAVENVLHTSLTNVNAVMHPLPTLLNAARCESGTPFQYYLEGITPSVGSLAEKVDAERIAIAKA 247 (359)
T ss_dssp GHHHHHHHHTTTCTTEEECSCHHHHHHCCHHHHHTHHHHHTTHHHHHTTCCCBHHHHHCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhhhcEEcCChHhhhccCCCccccHHHHHhhhchhhcCCccchhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44556677777775542 110 00000 02222211 11 233456778899999999999
Q ss_pred cCCCHHHHHHHHHccCCCcccc--cccCCCCCccccCCCCCCCCC-CccchhHHHHH----HHHHHHHhhcCCCchHHHH
Q psy764 185 LGMNAKLLSDVINTSSGRCWSS--EVYNPVPGVLSNVPASNNYNG-GFKISLLAKDM----KLAEDLANRCTAQTDLSKL 257 (286)
Q Consensus 185 ~Gl~~~~~~~~~~~~~~~s~~~--~~~~~~~~~~~~~~~~~~~~~-~f~~~~~~kd~----~~~~~~a~~~g~~~p~~~~ 257 (286)
.|++++.+.+.+....+.++.. +... .+.+..+ ...| .+....+.||+ ..+.++++++|+++|+.+.
T Consensus 248 ~G~~~~~~~~~~~~~~~~~~~~l~~~~~-~~sm~~d-----~~~~~e~~~~~~~~D~~~~~g~~~~~a~~~gv~~P~~~~ 321 (359)
T 1bg6_A 248 FDLNVPSVCEWYKESYGQSPATIYEAVQ-GNPAYRG-----IAGPINLNTRYFFEDVSTGLVPLSELGRAVNVPTPLIDA 321 (359)
T ss_dssp TTCCCCCHHHHC-------CCSHHHHHH-TCGGGTT-----CBCCSSSCCHHHHHHHHTTHHHHHHHHHHTTCCCHHHHH
T ss_pred hCCCCCcHHHHHHHHhCCCcccHHHHHh-cchhhcC-----CCCCCCCCccceecCcCccHHHHHHHHHHcCCCchHHHH
Confidence 9999888877766543322210 0000 0112211 1112 22233678998 7899999999999999999
Q ss_pred HHHHHHHHHHc
Q psy764 258 ATSIYKRLMDK 268 (286)
Q Consensus 258 ~~~~~~~a~~~ 268 (286)
++++++.....
T Consensus 322 l~~~~~~~~~~ 332 (359)
T 1bg6_A 322 VLDLISSLIDT 332 (359)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHCC
Confidence 99999876554
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.75 E-value=4.1e-17 Score=139.93 Aligned_cols=178 Identities=14% Similarity=0.204 Sum_probs=139.7
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHcCCc--ccCCHHHHhh-cCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKEGAN--MALSLSTLAS-GAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~--~~~s~~e~~~-~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||++++..|.++|+ +|++|||++++.+.+.+.|+. ...++.++++ ++|+||+|+|. +...+++.. +.+.++
T Consensus 12 mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~~---l~~~l~ 87 (281)
T 2g5c_A 12 MGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSPV-RTFREIAKK---LSYILS 87 (281)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSCH-HHHHHHHHH---HHHHSC
T ss_pred HHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHCCCcccccCCHHHHhcCCCCEEEEcCCH-HHHHHHHHH---HHhhCC
Confidence 89999999999999 999999999999888877875 3568889999 99999999995 577788764 667788
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCC----HHhhh----cCceEEEe---cCCHhhHHHHHHHHHHh
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGG----TKAAQ----EATLTFMV---GGDKSSLEKAKPILKCM 144 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~----~~~a~----~g~l~~~~---gg~~~~~~~~~~ll~~~ 144 (286)
++.+|++++++.+...+.+.+.+.+. +++ .|++++ |..+. .+..++++ +++++.++.++++|+.+
T Consensus 88 ~~~iv~~~~~~~~~~~~~l~~~l~~~---~v~~~p~~~~~~~gp~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~ 164 (281)
T 2g5c_A 88 EDATVTDQGSVKGKLVYDLENILGKR---FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWEDV 164 (281)
T ss_dssp TTCEEEECCSCCTHHHHHHHHHHGGG---EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHHT
T ss_pred CCcEEEECCCCcHHHHHHHHHhcccc---ceeeccccCCccCChhhhhhHHhCCCCEEEecCCCCCHHHHHHHHHHHHHc
Confidence 99999999999887777777776542 666 577763 44443 56656777 67889999999999999
Q ss_pred cCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Q psy764 145 GRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAK 190 (286)
Q Consensus 145 g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~ 190 (286)
|.+++++++......+|+++|...+... ++.+++. ..|+|.+
T Consensus 165 g~~~~~~~~~~~d~~~~~~~~~~~~~a~-~~~~~~~---~~~~~~~ 206 (281)
T 2g5c_A 165 GGVVEYMSPELHDYVFGVVSHLPHAVAF-ALVDTLI---HMSTPEV 206 (281)
T ss_dssp TCEEEECCHHHHHHHHHHHTHHHHHHHH-HHHHHHH---HHCBTTB
T ss_pred CCEEEEcCHHHHHHHHHHHHHHHHHHHH-HHHHHHH---hcccchH
Confidence 9988899987789999999998766444 3344432 2455543
|
| >1jay_A Coenzyme F420H2:NADP+ oxidoreductase (FNO); rossman fold, structural genomics; HET: NAP F42; 1.65A {Archaeoglobus fulgidus} SCOP: c.2.1.6 PDB: 1jax_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=137.39 Aligned_cols=163 Identities=13% Similarity=0.205 Sum_probs=130.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-C-------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-G-------ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g-------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||+.++..|.++|++|++|||++++.+.+.+. + +. ..++.++++++|+||+|+| +..+++++.. +.+
T Consensus 12 ~G~~ia~~l~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~D~Vi~~~~-~~~~~~~~~~---l~~ 86 (212)
T 1jay_A 12 LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASIT-GMKNEDAAEACDIAVLTIP-WEHAIDTARD---LKN 86 (212)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEE-EEEHHHHHHHCSEEEECSC-HHHHHHHHHH---THH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccccccCCCC-hhhHHHHHhcCCEEEEeCC-hhhHHHHHHH---HHH
Confidence 78999999999999999999999988777553 3 33 4578888999999999999 4677888764 555
Q ss_pred cCCCCCEEEEcCCCCc------------hHHHHHHHHHHhcCCceEec--cCCCCHHhh--hcCceEEEecCC-HhhHHH
Q psy764 74 HAKPGVIVIDSSTVDP------------QVPQTLSNLAREKQITFLDA--PVSGGTKAA--QEATLTFMVGGD-KSSLEK 136 (286)
Q Consensus 74 ~l~~g~ivid~st~~p------------~~~~~~~~~~~~~g~~~~~~--pv~g~~~~a--~~g~l~~~~gg~-~~~~~~ 136 (286)
.+ ++++|+++++..+ ...+++++.+. +..++++ |+.+..... ..+.++++++|+ ++.+++
T Consensus 87 ~~-~~~~vi~~~~g~~~~~~~~~~~~g~~~~~~l~~~~~--~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 163 (212)
T 1jay_A 87 IL-REKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLE--SEKVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKV 163 (212)
T ss_dssp HH-TTSEEEECCCCEECCTTCCEECCSSCHHHHHHHHHT--CSCEEECCTTCCHHHHHCTTCCCCEEEEEEESCHHHHHH
T ss_pred Hc-CCCEEEEcCCCcCcCCceeecCCCCcHHHHHHHhCC--CCeEEEEccchHHHHhhCcCCCCCccEEEECCcHHHHHH
Confidence 55 5899999998433 33667776664 4678887 666555444 556778888886 889999
Q ss_pred HHHHHHHh-cCCeEecCCcchHHHHHHHHHHHHHHHH
Q psy764 137 AKPILKCM-GRNIVHCGDSGNGQVAKLCNNMLLGVTM 172 (286)
Q Consensus 137 ~~~ll~~~-g~~v~~~g~~g~a~~~Kl~~n~~~~~~~ 172 (286)
++++|+.+ |.+++++++.+.+..+|+++|++.+...
T Consensus 164 v~~l~~~~~G~~~~~~~~~~~a~~~k~~~~~~~~~~~ 200 (212)
T 1jay_A 164 VMSLISEIDGLRPLDAGPLSNSRLVESLTPLILNIMR 200 (212)
T ss_dssp HHHHHHHSTTEEEEEEESGGGHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHcCCCCceeccchhHHHHhcchHHHHHHHHH
Confidence 99999999 9989999999999999999999877543
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.74 E-value=4.4e-17 Score=139.58 Aligned_cols=184 Identities=20% Similarity=0.260 Sum_probs=140.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc--ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~--~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||++++..|.++|++|++|||++++.+.+.+.|+. .+.++.++ +++|+||+|+| ++.+++++.. +.+.+++++
T Consensus 11 ~G~~~a~~l~~~g~~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~D~vi~av~-~~~~~~~~~~---l~~~~~~~~ 85 (279)
T 2f1k_A 11 IGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLL-QTAKIIFLCTP-IQLILPTLEK---LIPHLSPTA 85 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGG-TTCSEEEECSC-HHHHHHHHHH---HGGGSCTTC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHhCCCCccccCCHHHh-CCCCEEEEECC-HHHHHHHHHH---HHhhCCCCC
Confidence 79999999999999999999999999888877763 56788888 99999999999 4678888864 777788899
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEec-cCCCC----HHhhh----cCceEEEec---CCHhhHHHHHHHHHHhcCC
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDA-PVSGG----TKAAQ----EATLTFMVG---GDKSSLEKAKPILKCMGRN 147 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~-pv~g~----~~~a~----~g~l~~~~g---g~~~~~~~~~~ll~~~g~~ 147 (286)
+|++++++.+...+.+.+.+ .++++. |++|+ |..+. .+..++++. ++++.++.++++|+.+|.+
T Consensus 86 ~vv~~~~~~~~~~~~~~~~~----~~~~~~~p~~g~~~~gp~~a~~~~~~g~~~~~~~~~~~~~~~~~~v~~l~~~~g~~ 161 (279)
T 2f1k_A 86 IVTDVASVKTAIAEPASQLW----SGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVK 161 (279)
T ss_dssp EEEECCSCCHHHHHHHHHHS----TTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCE
T ss_pred EEEECCCCcHHHHHHHHHHh----CCEeecCcccCCccCCHHHHhHHHhCCCcEEEecCCCCCHHHHHHHHHHHHHcCCE
Confidence 99999888877666554432 267765 87753 33332 344455553 4788899999999999998
Q ss_pred eEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHc
Q psy764 148 IVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMN--AKLLSDVINT 198 (286)
Q Consensus 148 v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~--~~~~~~~~~~ 198 (286)
++++++.......|++.|...+... ++.++ +...|++ .+....++..
T Consensus 162 ~~~~~~~~~~~~~~~~~~~p~~i~~-al~~~---~~~~~~~~~~~~~~~l~~~ 210 (279)
T 2f1k_A 162 IYLCTPADHDQAVAWISHLPVMVSA-ALIQA---CAGEKDGDILKLAQNLASS 210 (279)
T ss_dssp EEECCHHHHHHHHHHHTHHHHHHHH-HHHHH---HHTCSCHHHHHHHHHHCCH
T ss_pred EEEcCHHHHHHHHHHHhhHHHHHHH-HHHHH---HHhcccccchhHHHhhcCC
Confidence 9999988899999999997555444 55555 4566765 5666665543
|
| >3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.6e-17 Score=145.55 Aligned_cols=165 Identities=15% Similarity=0.201 Sum_probs=133.0
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhc----CcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASG----AEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~----adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+||+++|++|.++|++|++|||++++.+.+.+.|+..+.++.+++++ +|+||+|+| +..+.+++.. +.+. +
T Consensus 18 ~mG~slA~~L~~~G~~V~~~dr~~~~~~~a~~~G~~~~~~~~e~~~~a~~~aDlVilavP-~~~~~~vl~~---l~~~-~ 92 (341)
T 3ktd_A 18 LIGGSLLRDLHAANHSVFGYNRSRSGAKSAVDEGFDVSADLEATLQRAAAEDALIVLAVP-MTAIDSLLDA---VHTH-A 92 (341)
T ss_dssp HHHHHHHHHHHHTTCCEEEECSCHHHHHHHHHTTCCEESCHHHHHHHHHHTTCEEEECSC-HHHHHHHHHH---HHHH-C
T ss_pred HHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeeeCCHHHHHHhcccCCCEEEEeCC-HHHHHHHHHH---HHcc-C
Confidence 38999999999999999999999999998888899888899888764 799999999 5688888864 6654 7
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCH-Hhhh-------cCceEEEecC---CHh--------hHHH
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGT-KAAQ-------EATLTFMVGG---DKS--------SLEK 136 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~-~~a~-------~g~l~~~~gg---~~~--------~~~~ 136 (286)
++.+|+|++++++...+.+.+.+. +.+|++ +|++|+. .+.. .+..++++.+ +++ .+++
T Consensus 93 ~~~iv~Dv~Svk~~i~~~~~~~~~--~~~~v~~HPmaG~e~sG~~aa~~~Lf~g~~~iltp~~~~~~e~~~~~~~~~~~~ 170 (341)
T 3ktd_A 93 PNNGFTDVVSVKTAVYDAVKARNM--QHRYVGSHPMAGTANSGWSASMDGLFKRAVWVVTFDQLFDGTDINSTWISIWKD 170 (341)
T ss_dssp TTCCEEECCSCSHHHHHHHHHTTC--GGGEECEEECCSCC-CCGGGCCSSTTTTCEEEECCGGGTSSCCCCHHHHHHHHH
T ss_pred CCCEEEEcCCCChHHHHHHHHhCC--CCcEecCCccccccccchhhhhhHHhcCCeEEEEeCCCCChhhhccchHHHHHH
Confidence 899999999999887777765542 468998 7999865 2222 3445777765 456 8899
Q ss_pred HHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHH
Q psy764 137 AKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTM 172 (286)
Q Consensus 137 ~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~ 172 (286)
++++|+.+|.+++++++......+.+++.+......
T Consensus 171 v~~l~~~~Ga~v~~~~~~~HD~~~A~vshlPh~ia~ 206 (341)
T 3ktd_A 171 VVQMALAVGAEVVPSRVGPHDAAAARVSHLTHILAE 206 (341)
T ss_dssp HHHHHHHTTCEEEECCHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHcCCEEEEeCHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999987788888887776554333
|
| >3mog_A Probable 3-hydroxybutyryl-COA dehydrogenase; structural genomics, PSI, protein structure initiative, NYSG oxidoreductase; 2.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.5e-17 Score=152.35 Aligned_cols=175 Identities=15% Similarity=0.252 Sum_probs=134.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------cC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------EG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+.+|.+|+++||+|++||+++++++++.+ .| ++.+++++ .+++||+||.|||.
T Consensus 16 MG~~IA~~la~aG~~V~l~D~~~e~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~~~~-~~~~aDlVIeAVpe 94 (483)
T 3mog_A 16 MGAGIAEVAASHGHQVLLYDISAEALTRAIDGIHARLNSRVTRGKLTAETCERTLKRLIPVTDIH-ALAAADLVIEAASE 94 (483)
T ss_dssp HHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHTTTTTTSSCHHHHHHHHHTEEEECCGG-GGGGCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceeEeCCHH-HhcCCCEEEEcCCC
Confidence 8999999999999999999999998877653 23 24566774 67899999999998
Q ss_pred hhHHH-HHhcCCccccccCCCCCEEE-EcCCCCchHHHHHHHHHHh----cCCceEe-ccCCCCHHhhhcCceEEEecC-
Q psy764 58 SQDVL-DAYDGSDGILKHAKPGVIVI-DSSTVDPQVPQTLSNLARE----KQITFLD-APVSGGTKAAQEATLTFMVGG- 129 (286)
Q Consensus 58 ~~~~~-~v~~~~~~l~~~l~~g~ivi-d~st~~p~~~~~~~~~~~~----~g~~~~~-~pv~g~~~~a~~g~l~~~~gg- 129 (286)
+.+++ +++.+ +.+.++++++++ ++||+++. ++++.+.. .|.+|++ +|++ .++.+++|
T Consensus 95 ~~~vk~~v~~~---l~~~~~~~~IlasntSti~i~---~ia~~~~~p~~~ig~hf~~Pa~v~---------~Lvevv~g~ 159 (483)
T 3mog_A 95 RLEVKKALFAQ---LAEVCPPQTLLTTNTSSISIT---AIAAEIKNPERVAGLHFFNPAPVM---------KLVEVVSGL 159 (483)
T ss_dssp CHHHHHHHHHH---HHHHSCTTCEEEECCSSSCHH---HHTTTSSSGGGEEEEEECSSTTTC---------CEEEEEECS
T ss_pred cHHHHHHHHHH---HHHhhccCcEEEecCCCCCHH---HHHHHccCccceEEeeecChhhhC---------CeEEEecCC
Confidence 76664 55543 667788899884 68887765 23332221 1344444 2332 56788888
Q ss_pred --CHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Q psy764 130 --DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS 200 (286)
Q Consensus 130 --~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~ 200 (286)
+++.++++.++++.+|+.++++++.. | |++||++.. .++|++.++++.+.|++++.+++..+.
T Consensus 160 ~Ts~e~~~~~~~l~~~lGk~~v~v~d~~-G---fi~Nr~l~~----~~~Ea~~l~~~g~~~~~~id~a~~~~~ 224 (483)
T 3mog_A 160 ATAAEVVEQLCELTLSWGKQPVRCHSTP-G---FIVNRVARP----YYSEAWRALEEQVAAPEVIDAALRDGA 224 (483)
T ss_dssp SCCHHHHHHHHHHHHHTTCEEEEEESCT-T---TTHHHHTHH----HHHHHHHHHHTTCSCHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhCCEEEEEeccC-c---chHHHHHHH----HHHHHHHHHHhCCCCHHHHHHHHHhcC
Confidence 78999999999999999999998742 2 788887766 689999999999999999999998653
|
| >4fgw_A Glycerol-3-phosphate dehydrogenase [NAD(+)] 1; oxidoreductase; 2.45A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-17 Score=147.63 Aligned_cols=255 Identities=10% Similarity=-0.012 Sum_probs=171.2
Q ss_pred ccHHHHHHHHhCCC--------cEEEEcCCchH-----HHHHHHc--------------CCcccCCHHHHhhcCcEEEEe
Q psy764 2 ISTLKLFFLQFQGH--------DVIVYDKNTDA-----SQTLAKE--------------GANMALSLSTLASGAEFIISM 54 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--------~V~~~dr~~~~-----~~~l~~~--------------g~~~~~s~~e~~~~adivi~~ 54 (286)
.|++||..|+++|| +|.+|.|+++. .+.++.. .+.+++++.++++++|+||++
T Consensus 45 WGTALA~~la~ng~~~~~~~~~~V~lw~r~~e~~~~~~~e~in~~~~N~~YLpgv~Lp~~i~~t~dl~~al~~ad~ii~a 124 (391)
T 4fgw_A 45 WGTTIAKVVAENCKGYPEVFAPIVQMWVFEEEINGEKLTEIINTRHQNVKYLPGITLPDNLVANPDLIDSVKDVDIIVFN 124 (391)
T ss_dssp HHHHHHHHHHHHHHHCTTTEEEEEEEECCCCBSSSCBHHHHHTTTCCBTTTBTTCCCCSSEEEESCHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHcCCCccccCCceEEEEEcchHhhhHHHHHHHHhcCcCcccCCCCcCCCCcEEeCCHHHHHhcCCEEEEE
Confidence 59999999999876 49999998753 3334332 246678899999999999999
Q ss_pred cCChhHHHHHhcCCccccccCCCCCEEEEcCCCCc-h------HHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEe
Q psy764 55 LPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDP-Q------VPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMV 127 (286)
Q Consensus 55 v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p-~------~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~ 127 (286)
||+ +.+++++.. +.+.++++.++|.++...- . ..+.+.+.+ ...+.++.+|.+.........+.++++
T Consensus 125 vPs-~~~r~~l~~---l~~~~~~~~~iv~~~KGie~~~~~~~~~se~i~e~~-~~~~~vLsGPs~A~EVa~~~pta~~iA 199 (391)
T 4fgw_A 125 IPH-QFLPRICSQ---LKGHVDSHVRAISCLKGFEVGAKGVQLLSSYITEEL-GIQCGALSGANIATEVAQEHWSETTVA 199 (391)
T ss_dssp SCG-GGHHHHHHH---HTTTSCTTCEEEECCCSCEEETTEEECHHHHHHHHH-CCEEEEEECSCCHHHHHTTCCEEEEEE
T ss_pred CCh-hhhHHHHHH---hccccCCCceeEEeccccccccccchhHHHHHHHHh-CccceeccCCchHHHhhcCCCceEEEE
Confidence 995 799999985 7788889999999987642 1 122233332 223456788888777777777766665
Q ss_pred cCCHh---------hHHHHHHHHHHhcCCeEecCC---cchHHHHH--------------HHHHHHHHHHHHHHHHHHHH
Q psy764 128 GGDKS---------SLEKAKPILKCMGRNIVHCGD---SGNGQVAK--------------LCNNMLLGVTMMGVAEAMNL 181 (286)
Q Consensus 128 gg~~~---------~~~~~~~ll~~~g~~v~~~g~---~g~a~~~K--------------l~~n~~~~~~~~~~~Ea~~l 181 (286)
+.+.. ..+.++.+|..-..+++...+ +.-+.++| +..|+..+.++.+++|+.+|
T Consensus 200 ~~~~~~~~~~~~~~~a~~~~~lf~~~~frvy~s~DviGvElgGAlKNViAIAaGi~dGlg~G~NakAALitrGl~Em~rl 279 (391)
T 4fgw_A 200 YHIPKDFRGEGKDVDHKVLKALFHRPYFHVSVIEDVAGISICGALKNVVALGCGFVEGLGWGNNASAAIQRVGLGEIIRF 279 (391)
T ss_dssp CCCCTTCCCSSSSCCHHHHHHHHCBTTEEEEEESCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ecChhhhhhhhHHHHHHHHHHHhCCCCEEEEEeCCccceehHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHH
Confidence 54332 235567777665555555544 34566666 77899999999999999999
Q ss_pred HHHc---CCCHHHHHHHHHcc----CCCcccccccCCCCCccc-cCCCCCCCC--CCccchhHHHHHHHHHHHHhhcCC-
Q psy764 182 GVKL---GMNAKLLSDVINTS----SGRCWSSEVYNPVPGVLS-NVPASNNYN--GGFKISLLAKDMKLAEDLANRCTA- 250 (286)
Q Consensus 182 ~~~~---Gl~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~-~~~~~~~~~--~~f~~~~~~kd~~~~~~~a~~~g~- 250 (286)
+.++ |-++.++..+..-+ ++.| ++|+..+..+.. ++.....-. ....+.++.+..+.+.++++++|+
T Consensus 280 g~al~~~g~~~tt~~glaGlGDLi~Tc~s--SRNr~~G~~lg~~G~~~~~~~~~~~~g~v~EGv~ta~~v~~l~~~~~v~ 357 (391)
T 4fgw_A 280 GQMFFPESREETYYQESAGVADLITTCAG--GRNVKVARLMATSGKDAWECEKELLNGQSAQGLITCKEVHEWLETCGSV 357 (391)
T ss_dssp HHHHSTTCCHHHHHHSTTTHHHHHHHHHS--SHHHHHHHHHHHTCCCHHHHHHHHHTTCCCTHHHHHHHHHHHHHHHTCS
T ss_pred HHHHhcccCCceeecCCCcccceeEEecC--CccHHHHHHHHhcCCCHHHHHHHHhCCCEEehHHHHHHHHHHHHHcCCC
Confidence 9998 55555554432211 3333 555443211110 000000000 012355677888899999999999
Q ss_pred -CchHHHHHHHHHH
Q psy764 251 -QTDLSKLATSIYK 263 (286)
Q Consensus 251 -~~p~~~~~~~~~~ 263 (286)
++|+++++++++.
T Consensus 358 ~emPI~~~vy~IL~ 371 (391)
T 4fgw_A 358 EDFPLFEAVYQIVY 371 (391)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 8999999999876
|
| >2i76_A Hypothetical protein; NADP, dehydrogenase, TM1727, structural genomics, PSI-2, protein structure initiative; HET: NDP; 3.00A {Thermotoga maritima} SCOP: a.100.1.10 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-17 Score=141.78 Aligned_cols=180 Identities=13% Similarity=0.157 Sum_probs=125.1
Q ss_pred ccHHHHHHHHhCCCcE-EEEcCCchHHHHHHH-cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDV-IVYDKNTDASQTLAK-EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V-~~~dr~~~~~~~l~~-~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||+++++.|.++ ++| .+|||++++.+++.+ .|. .+.++.++++++|+||+|+|+. .+++++.+ +. .+++
T Consensus 13 mG~~la~~l~~~-~~v~~v~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~DvVilav~~~-~~~~v~~~---l~---~~~~ 83 (276)
T 2i76_A 13 LTRFFLECLKDR-YEIGYILSRSIDRARNLAEVYGG-KAATLEKHPELNGVVFVIVPDR-YIKTVANH---LN---LGDA 83 (276)
T ss_dssp HHHHHHHTTC-----CCCEECSSHHHHHHHHHHTCC-CCCSSCCCCC---CEEECSCTT-THHHHHTT---TC---CSSC
T ss_pred HHHHHHHHHHHc-CcEEEEEeCCHHHHHHHHHHcCC-ccCCHHHHHhcCCEEEEeCChH-HHHHHHHH---hc---cCCC
Confidence 799999999988 999 599999999988864 376 7778888888999999999974 67888864 43 5789
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhh-cCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcch--
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQ-EATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGN-- 156 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~-~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~-- 156 (286)
+||++|+..|....+ .. ..+..+..+|+++++.... ...++++++++++.++.++++|+.+|.+++++++.+.
T Consensus 84 ivi~~s~~~~~~~l~--~~--~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lG~~~~~v~~~~~~~ 159 (276)
T 2i76_A 84 VLVHCSGFLSSEIFK--KS--GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPSEKKKA 159 (276)
T ss_dssp CEEECCSSSCGGGGC--SS--SEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECCGGGHHH
T ss_pred EEEECCCCCcHHHHH--Hh--hccccchhhhcCCCchhHHHhCCCeEEEEeChHHHHHHHHHHHHhCCCEEEECHHHHHH
Confidence 999999776664321 11 1112233445666555444 4555678888888899999999999988999986443
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHc
Q psy764 157 -GQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAK--LLSDVINT 198 (286)
Q Consensus 157 -a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~--~~~~~~~~ 198 (286)
-...++++|++.+ .+.|+..++++.|++.+ .+.+++..
T Consensus 160 ~~~~~~l~~n~~~~----~~~~a~~~~~~~Gl~~~~a~~~~l~~~ 200 (276)
T 2i76_A 160 YHLAAVIASNFPVA----LAYLSKRIYTLLGLDEPELLIHTLMKG 200 (276)
T ss_dssp HHHHHHHHHTTHHH----HHHHHHHHHHTTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence 2445777886554 45777788999999987 55555543
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-16 Score=133.57 Aligned_cols=183 Identities=19% Similarity=0.213 Sum_probs=133.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----------C--------------CcccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----------G--------------ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----------g--------------~~~~~s~~e~~~~adivi~~v~ 56 (286)
||+.+|..|+++|++|++|||++++.+.+.+. | +..+.++.+++++||+||.|+|
T Consensus 15 mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~~aDlVi~av~ 94 (283)
T 4e12_A 15 LGSQIAFQTAFHGFAVTAYDINTDALDAAKKRFEGLAAVYEKEVAGAADGAAQKALGGIRYSDDLAQAVKDADLVIEAVP 94 (283)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHSTTCTTTHHHHHHHHCEEESCHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHcCeEEeCCHHHHhccCCEEEEecc
Confidence 89999999999999999999999988776543 2 4677899999999999999999
Q ss_pred ChhHH-HHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHh
Q psy764 57 ASQDV-LDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKS 132 (286)
Q Consensus 57 ~~~~~-~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~ 132 (286)
...++ +.++.+ +.+.++++.++++.++..+. .++++.+. +..+++....+. | ...+.++.++.+ +++
T Consensus 95 ~~~~~~~~v~~~---l~~~~~~~~il~s~tS~~~~--~~la~~~~-~~~~~ig~h~~~-p--~~~~~lvevv~~~~t~~~ 165 (283)
T 4e12_A 95 ESLDLKRDIYTK---LGELAPAKTIFATNSSTLLP--SDLVGYTG-RGDKFLALHFAN-H--VWVNNTAEVMGTTKTDPE 165 (283)
T ss_dssp SCHHHHHHHHHH---HHHHSCTTCEEEECCSSSCH--HHHHHHHS-CGGGEEEEEECS-S--TTTSCEEEEEECTTSCHH
T ss_pred CcHHHHHHHHHH---HHhhCCCCcEEEECCCCCCH--HHHHhhcC-CCcceEEEccCC-C--cccCceEEEEeCCCCCHH
Confidence 76444 455543 66778899999975554443 34444442 223444332222 1 234555666666 588
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccC
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSS 200 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~ 200 (286)
.+++++++++.+|+.+++++....+. ++|+++. ..+.|++.+.++.+++++++.+++..+.
T Consensus 166 ~~~~~~~l~~~~g~~~v~v~~~~~g~---i~nr~~~----~~~~ea~~l~~~g~~~~~~id~~~~~~~ 226 (283)
T 4e12_A 166 VYQQVVEFASAIGMVPIELKKEKAGY---VLNSLLV----PLLDAAAELLVDGIADPETIDKTWRIGT 226 (283)
T ss_dssp HHHHHHHHHHHTTCEEEECSSCCTTT---THHHHHH----HHHHHHHHHHHTTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEecCCCCE---EehHHHH----HHHHHHHHHHHhCCCCHHHHHHHHHhcc
Confidence 99999999999999999995433443 4455554 3689999999999999999999987654
|
| >2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.4e-16 Score=136.29 Aligned_cols=171 Identities=13% Similarity=0.153 Sum_probs=130.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+++|..|.++|++|++|||+++. ++.+++++||+||+|||. ..+++++.. +.+.++++++|
T Consensus 33 mG~~la~~l~~~G~~V~~~~~~~~~-------------~~~~~~~~aDvVilavp~-~~~~~vl~~---l~~~l~~~~iv 95 (298)
T 2pv7_A 33 LGGLFARYLRASGYPISILDREDWA-------------VAESILANADVVIVSVPI-NLTLETIER---LKPYLTENMLL 95 (298)
T ss_dssp HHHHHHHHHHTTTCCEEEECTTCGG-------------GHHHHHTTCSEEEECSCG-GGHHHHHHH---HGGGCCTTSEE
T ss_pred HHHHHHHHHHhCCCeEEEEECCccc-------------CHHHHhcCCCEEEEeCCH-HHHHHHHHH---HHhhcCCCcEE
Confidence 7899999999999999999998762 577888999999999995 568888874 77778899999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcCceEEEecC-CHhhHHHHHHHHHHhcCCeEecCCcchHHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMVGG-DKSSLEKAKPILKCMGRNIVHCGDSGNGQV 159 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg-~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~ 159 (286)
+|++++.....+.+.+. .+.++++ .|++|++.....+..++++.+ +++.++.++++|+.+|.+++++++......
T Consensus 96 ~~~~svk~~~~~~~~~~---~~~~~v~~hP~~g~~~~~~~g~~~~l~~~~~~~~~~~v~~l~~~~G~~~~~~~~~~~d~~ 172 (298)
T 2pv7_A 96 ADLTSVKREPLAKMLEV---HTGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQTNATEHDHN 172 (298)
T ss_dssp EECCSCCHHHHHHHHHH---CSSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEEEECCHHHHHHH
T ss_pred EECCCCCcHHHHHHHHh---cCCCEEeeCCCCCCCchhhcCCeEEEecCCCHHHHHHHHHHHHHcCCEEEECCHHHHHHH
Confidence 99999887766655443 2457786 488887654445655666544 678889999999999998889987677888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy764 160 AKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVI 196 (286)
Q Consensus 160 ~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~ 196 (286)
++++.+...+... ++.+++ .+.|++.+...++.
T Consensus 173 ~a~~~~~p~~~a~-~l~~~l---~~~g~~~~~~~~la 205 (298)
T 2pv7_A 173 MTYIQALRHFSTF-ANGLHL---SKQPINLANLLALS 205 (298)
T ss_dssp HHHHTHHHHHHHH-HHHHHH---TTSSCCHHHHHHTC
T ss_pred HHHHHHHHHHHHH-HHHHHH---HhcCCCHHHHHhhc
Confidence 8888887655433 334443 24778776655543
|
| >1f0y_A HCDH, L-3-hydroxyacyl-COA dehydrogenase; abortive ternary complex, oxidoreductase; HET: CAA NAD; 1.80A {Homo sapiens} SCOP: a.100.1.3 c.2.1.6 PDB: 3rqs_A 1lsj_A* 1il0_A* 1lso_A* 1m76_A* 1m75_A* 1f14_A 1f12_A 1f17_A* 3had_A* 2hdh_A* 3hdh_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=7.6e-16 Score=133.45 Aligned_cols=179 Identities=15% Similarity=0.224 Sum_probs=126.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH-----------HcC------------------CcccCCHHHHhhcCcEEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA-----------KEG------------------ANMALSLSTLASGAEFII 52 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~-----------~~g------------------~~~~~s~~e~~~~adivi 52 (286)
||+++|..|+++||+|++|||++++++.+. +.| ++.++++++++++||+||
T Consensus 26 mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~aD~Vi 105 (302)
T 1f0y_A 26 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVV 105 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEE
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCccccchhhHHHHHhceEEecCHHHhhcCCCEEE
Confidence 899999999999999999999998876542 122 445678888999999999
Q ss_pred EecCChhHHH-HHhcCCccccccCCCCCEEEEcC-CCCchHHHHHHHHHHhcCCceEec-cCCCCHHhhhcCceEEEecC
Q psy764 53 SMLPASQDVL-DAYDGSDGILKHAKPGVIVIDSS-TVDPQVPQTLSNLAREKQITFLDA-PVSGGTKAAQEATLTFMVGG 129 (286)
Q Consensus 53 ~~v~~~~~~~-~v~~~~~~l~~~l~~g~ivid~s-t~~p~~~~~~~~~~~~~g~~~~~~-pv~g~~~~a~~g~l~~~~gg 129 (286)
+|||.+.+++ .++.. +.+.++++++|+..+ +..+. ++++.+. +..+++.. |+. |. ..+.+..+++|
T Consensus 106 ~avp~~~~~~~~v~~~---l~~~~~~~~iv~s~ts~i~~~---~l~~~~~-~~~~~~g~h~~~--P~--~~~~~~~i~~g 174 (302)
T 1f0y_A 106 EAIVENLKVKNELFKR---LDKFAAEHTIFASNTSSLQIT---SIANATT-RQDRFAGLHFFN--PV--PVMKLVEVIKT 174 (302)
T ss_dssp ECCCSCHHHHHHHHHH---HTTTSCTTCEEEECCSSSCHH---HHHTTSS-CGGGEEEEEECS--ST--TTCCEEEEECC
T ss_pred EcCcCcHHHHHHHHHH---HHhhCCCCeEEEECCCCCCHH---HHHHhcC-CcccEEEEecCC--Cc--ccCceEEEeCC
Confidence 9999865554 45543 666677888888644 44433 3333322 11123322 221 11 12334455555
Q ss_pred ---CHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 130 ---DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 130 ---~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
+++.++.+.++++.+|+.++++++. .+ ++++|++. ..++|++.++++.|++++++..++..+
T Consensus 175 ~~~~~e~~~~~~~l~~~~G~~~v~~~~~-~g---~i~nr~l~----~~~~Ea~~l~~~g~~~~~~id~~~~~g 239 (302)
T 1f0y_A 175 PMTSQKTFESLVDFSKALGKHPVSCKDT-PG---FIVNRLLV----PYLMEAIRLYERGDASKEDIDTAMKLG 239 (302)
T ss_dssp TTCCHHHHHHHHHHHHHTTCEEEEECSC-TT---TTHHHHHH----HHHHHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCceEEecCc-cc---ccHHHHHH----HHHHHHHHHHHcCCCCHHHHHHHHHhC
Confidence 7899999999999999988888763 22 56666654 368999999999999999999888754
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.68 E-value=7.2e-16 Score=139.49 Aligned_cols=174 Identities=13% Similarity=0.185 Sum_probs=125.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH--------HHHHcC-------------CcccCCHHHHhhcCcEEEEecCChhH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ--------TLAKEG-------------ANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~--------~l~~~g-------------~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
||+.+|.+|+++|++|++||+++++.. ++.+.| ++.+++++ .+++||+||.|||.+.+
T Consensus 65 MG~~IA~~la~aG~~V~l~D~~~e~a~~~i~~~l~~~~~~G~l~~~~~~~~~~~i~~t~dl~-al~~aDlVIeAVpe~~~ 143 (460)
T 3k6j_A 65 MGKAMAICFGLAGIETFLVVRNEQRCKQELEVMYAREKSFKRLNDKRIEKINANLKITSDFH-KLSNCDLIVESVIEDMK 143 (460)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTTEEEESCGG-GCTTCSEEEECCCSCHH
T ss_pred HHHHHHHHHHHCCCeEEEEECcHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhcceEEeCCHH-HHccCCEEEEcCCCCHH
Confidence 899999999999999999999988432 333444 24567775 68899999999997666
Q ss_pred HHHHhcCCccccccCCCCCEEEEc-CCCCchHHHHHHHHHHh----cCCceEeccCCCCHHhhhcCceEEEecC---CHh
Q psy764 61 VLDAYDGSDGILKHAKPGVIVIDS-STVDPQVPQTLSNLARE----KQITFLDAPVSGGTKAAQEATLTFMVGG---DKS 132 (286)
Q Consensus 61 ~~~v~~~~~~l~~~l~~g~ivid~-st~~p~~~~~~~~~~~~----~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~ 132 (286)
++..+.+ .+.+.++++++|++. ||+++. ++++.+.. .|.+|++ |+. ...++-++.| +++
T Consensus 144 vk~~v~~--~l~~~~~~~aIlasnTSsl~i~---~ia~~~~~p~r~iG~Hffn-Pv~-------~m~LvEIv~g~~Ts~e 210 (460)
T 3k6j_A 144 LKKELFA--NLENICKSTCIFGTNTSSLDLN---EISSVLRDPSNLVGIHFFN-PAN-------VIRLVEIIYGSHTSSQ 210 (460)
T ss_dssp HHHHHHH--HHHTTSCTTCEEEECCSSSCHH---HHHTTSSSGGGEEEEECCS-STT-------TCCEEEEECCSSCCHH
T ss_pred HHHHHHH--HHHhhCCCCCEEEecCCChhHH---HHHHhccCCcceEEEEecc-hhh-------hCCEEEEEeCCCCCHH
Confidence 6544332 377778899999764 454432 34433321 1344444 332 2334444544 689
Q ss_pred hHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 133 SLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 133 ~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
+++++.++++.+|+.++++++ +.|. ++|+++.. .++|++.++++.|+|++++.+++.
T Consensus 211 ~~~~~~~l~~~lGk~~v~v~d-~pGf---i~Nril~~----~~~EA~~l~~~~Ga~~e~ID~a~~ 267 (460)
T 3k6j_A 211 AIATAFQACESIKKLPVLVGN-CKSF---VFNRLLHV----YFDQSQKLMYEYGYLPHQIDKIIT 267 (460)
T ss_dssp HHHHHHHHHHHTTCEEEEESS-CCHH---HHHHHHHH----HHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCEEEEEec-ccHH---HHHHHHHH----HHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999987 3442 56666654 579999999999999999999986
|
| >2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.2e-18 Score=139.55 Aligned_cols=149 Identities=19% Similarity=0.199 Sum_probs=112.1
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||+.++++|.+.|++|++|||+++ .+.+...|+... ++.++++++|+||+|+|. +++++++ + +.+ ..++++
T Consensus 29 ~mG~~la~~L~~~G~~V~~~~r~~~-~~~~~~~g~~~~-~~~~~~~~aDvVilav~~-~~~~~v~-~---l~~-~~~~~i 100 (201)
T 2yjz_A 29 DFGKSLGLKMLQCGYSVVFGSRNPQ-VSSLLPRGAEVL-CYSEAASRSDVIVLAVHR-EHYDFLA-E---LAD-SLKGRV 100 (201)
Confidence 3899999999999999999999987 555655677666 788899999999999996 5778776 2 433 457899
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHH----------hhhcCce-----EEEecCCHhhHHHHHHHHHHhc
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTK----------AAQEATL-----TFMVGGDKSSLEKAKPILKCMG 145 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~----------~a~~g~l-----~~~~gg~~~~~~~~~~ll~~~g 145 (286)
|||+++..|... ....+..+++.|+.+.+. ..+.|.+ .+++|++++.+++++++|+.+|
T Consensus 101 vI~~~~G~~~~~------~~~~~~~~l~~~~~~~~vvra~~n~~a~~~~~g~l~g~~~~~~~g~~~~~~~~v~~ll~~~G 174 (201)
T 2yjz_A 101 LIDVSNNQKMNQ------YPESNAEYLAQLVPGAHVVKAFNTISAWALQSGTLDASRQVFVCGNDSKAKDRVMDIARTLG 174 (201)
Confidence 999999887432 112223334433333221 2223442 6778888899999999999999
Q ss_pred CCeEecCCcchHHHHHHH
Q psy764 146 RNIVHCGDSGNGQVAKLC 163 (286)
Q Consensus 146 ~~v~~~g~~g~a~~~Kl~ 163 (286)
.+++++|+.|.|..+|.+
T Consensus 175 ~~~~~~G~l~~a~~~e~~ 192 (201)
T 2yjz_A 175 LTPLDQGSLVAAKEIENY 192 (201)
Confidence 999999999999999864
|
| >3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=131.45 Aligned_cols=149 Identities=15% Similarity=0.268 Sum_probs=117.8
Q ss_pred ccHHHHHHHHhC--CCcEEEEcCCchHHHHHHHcCC--cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc-CC
Q psy764 2 ISTLKLFFLQFQ--GHDVIVYDKNTDASQTLAKEGA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH-AK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~g~--~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~-l~ 76 (286)
||++++.+|.++ |++|++|||++++.+.+.+.|. ..+.++.++++++|+||+|+|. ...++++.. +.+. ++
T Consensus 17 mG~~~a~~l~~~g~~~~V~~~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~aDvVilavp~-~~~~~v~~~---l~~~~l~ 92 (290)
T 3b1f_A 17 IGASLALGIKRDHPHYKIVGYNRSDRSRDIALERGIVDEATADFKVFAALADVIILAVPI-KKTIDFIKI---LADLDLK 92 (290)
T ss_dssp HHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTSCSEEESCTTTTGGGCSEEEECSCH-HHHHHHHHH---HHTSCCC
T ss_pred HHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHHcCCcccccCCHHHhhcCCCEEEEcCCH-HHHHHHHHH---HHhcCCC
Confidence 799999999988 6799999999999988887776 3567888889999999999995 566888864 7777 88
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCC----CHHhhh----cCceEEEe---cCCHhhHHHHHHHHHHh
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD-APVSG----GTKAAQ----EATLTFMV---GGDKSSLEKAKPILKCM 144 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g----~~~~a~----~g~l~~~~---gg~~~~~~~~~~ll~~~ 144 (286)
++++|+|++++.+...+.+.+.+.+++.+|++ .|++| ++..+. .+..++++ +++++.++.++++|+.+
T Consensus 93 ~~~ivi~~~~~~~~~~~~l~~~l~~~~~~~v~~~P~~g~~~~g~~~a~~~l~~g~~~~~~~~~~~~~~~~~~v~~l~~~~ 172 (290)
T 3b1f_A 93 EDVIITDAGSTKYEIVRAAEYYLKDKPVQFVGSHPMAGSHKSGAVAANVNLFENAYYIFSPSCLTKPNTIPALQDLLSGL 172 (290)
T ss_dssp TTCEEECCCSCHHHHHHHHHHHHTTSSCEEEEEEEC-----CCTTSCCTTTTTTSEEEEEECTTCCTTHHHHHHHHTGGG
T ss_pred CCCEEEECCCCchHHHHHHHHhccccCCEEEEeCCcCCCCcchHHHhhHHHhCCCeEEEecCCCCCHHHHHHHHHHHHHc
Confidence 89999999998887777777766554788887 68876 444333 45544444 46788899999999999
Q ss_pred cCCeEecCCc
Q psy764 145 GRNIVHCGDS 154 (286)
Q Consensus 145 g~~v~~~g~~ 154 (286)
|.+++++++.
T Consensus 173 G~~~~~~~~~ 182 (290)
T 3b1f_A 173 HARYVEIDAA 182 (290)
T ss_dssp CCEEEECCHH
T ss_pred CCEEEEcCHH
Confidence 9988888753
|
| >4huj_A Uncharacterized protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, dinucleotide-binding; 1.77A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=99.64 E-value=9.2e-16 Score=126.88 Aligned_cols=151 Identities=15% Similarity=0.183 Sum_probs=113.4
Q ss_pred ccHHHHHHHHhCCCcEEE-EcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIV-YDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~-~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||+++|..|.++|++|.+ |||++++.+.+.+. |.....+..+.++++|+||+|+| ++.+++++.. +.+ + +++
T Consensus 34 mG~~la~~l~~~g~~V~~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDvVilavp-~~~~~~v~~~---l~~-~-~~~ 107 (220)
T 4huj_A 34 IGSALAERFTAAQIPAIIANSRGPASLSSVTDRFGASVKAVELKDALQADVVILAVP-YDSIADIVTQ---VSD-W-GGQ 107 (220)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTCGGGGHHHHHHHTTTEEECCHHHHTTSSEEEEESC-GGGHHHHHTT---CSC-C-TTC
T ss_pred HHHHHHHHHHhCCCEEEEEECCCHHHHHHHHHHhCCCcccChHHHHhcCCEEEEeCC-hHHHHHHHHH---hhc-c-CCC
Confidence 799999999999999999 99999999988654 77776677778899999999999 5788999875 555 4 689
Q ss_pred EEEEcCCCCc------------hHHHHHHHHHHhcCCceE------eccCCC-CHHhhhcCceEEEecCCHhhHHHHHHH
Q psy764 80 IVIDSSTVDP------------QVPQTLSNLAREKQITFL------DAPVSG-GTKAAQEATLTFMVGGDKSSLEKAKPI 140 (286)
Q Consensus 80 ivid~st~~p------------~~~~~~~~~~~~~g~~~~------~~pv~g-~~~~a~~g~l~~~~gg~~~~~~~~~~l 140 (286)
+||++++..+ ...+.+++.+.. ..++ .+++.. ++.....+...++.|.+++..++++++
T Consensus 108 ivi~~~~g~~~~~~~~~~~~~~~~~~~l~~~l~~--~~vv~~~~~~~~~v~~~g~~~~~~~~~v~~~g~~~~~~~~v~~l 185 (220)
T 4huj_A 108 IVVDASNAIDFPAFKPRDLGGRLSTEIVSELVPG--AKVVKAFNTLPAAVLAADPDKGTGSRVLFLSGNHSDANRQVAEL 185 (220)
T ss_dssp EEEECCCCBCTTTCCBCCCTTCCHHHHHHHHSTT--CEEEEESCSSCHHHHTSCSBCSSCEEEEEEEESCHHHHHHHHHH
T ss_pred EEEEcCCCCCcccccccccCCCcHHHHHHHHCCC--CCEEECCCCCCHHHhhhCcccCCCCeeEEEeCCCHHHHHHHHHH
Confidence 9999987653 155666665532 2333 223332 222222234456666678999999999
Q ss_pred HHHhcCCeEecCCcchHHHH
Q psy764 141 LKCMGRNIVHCGDSGNGQVA 160 (286)
Q Consensus 141 l~~~g~~v~~~g~~g~a~~~ 160 (286)
|+.+|.+++++|+.+.+..+
T Consensus 186 ~~~~G~~~~~~G~l~~a~~~ 205 (220)
T 4huj_A 186 ISSLGFAPVDLGTLAASGPI 205 (220)
T ss_dssp HHHTTCEEEECCSHHHHHHH
T ss_pred HHHhCCCeEeeCChhhcchh
Confidence 99999999999998777554
|
| >2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=99.62 E-value=4.7e-16 Score=127.58 Aligned_cols=142 Identities=16% Similarity=0.187 Sum_probs=107.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+++|..|.++|++|++|||+++ +++++|+||+|+| +.++++++.. +.+.++ +++|
T Consensus 30 mG~~la~~l~~~g~~V~~~~~~~~------------------~~~~aD~vi~av~-~~~~~~v~~~---l~~~~~-~~~v 86 (209)
T 2raf_A 30 MGQAIGHNFEIAGHEVTYYGSKDQ------------------ATTLGEIVIMAVP-YPALAALAKQ---YATQLK-GKIV 86 (209)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCC------------------CSSCCSEEEECSC-HHHHHHHHHH---THHHHT-TSEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHH------------------HhccCCEEEEcCC-cHHHHHHHHH---HHHhcC-CCEE
Confidence 899999999999999999999876 4578999999999 6788888874 666666 8999
Q ss_pred EEcCCCCc--h-------H----HHHHHHHHHhcCCceEe------ccCCCCHHhhhcCceEEEecCC-HhhHHHHHHHH
Q psy764 82 IDSSTVDP--Q-------V----PQTLSNLAREKQITFLD------APVSGGTKAAQEATLTFMVGGD-KSSLEKAKPIL 141 (286)
Q Consensus 82 id~st~~p--~-------~----~~~~~~~~~~~g~~~~~------~pv~g~~~~a~~g~l~~~~gg~-~~~~~~~~~ll 141 (286)
|++++..+ . + .+.+.+.+. +.++++ +|.++.+.....+...++++|+ ++..++++++|
T Consensus 87 i~~~~g~~~~~~~~l~~~~~~~~~~~l~~~l~--~~~vv~~~~~~~~p~~~~~~~~g~~~~~~~~~g~~~~~~~~v~~ll 164 (209)
T 2raf_A 87 VDITNPLNFDTWDDLVVPADSSAAQELQQQLP--DSQVLKAFNTTFAATLQSGQVNGKEPTTVLVAGNDDSAKQRFTRAL 164 (209)
T ss_dssp EECCCCBCTTTSSSBSSCTTCCHHHHHHHHCT--TSEEEECSTTSCHHHHHHSEETTTEECEEEEEESCHHHHHHHHHHT
T ss_pred EEECCCCCccccccccCCCCCcHHHHHHHHCC--CCcEEEeeecccHhhccccccCCCCCceeEEcCCCHHHHHHHHHHH
Confidence 99988543 1 1 445555443 456776 3333222111112335556665 58899999999
Q ss_pred HHhcCCeEecCCcchHHHHHHHHHHHH
Q psy764 142 KCMGRNIVHCGDSGNGQVAKLCNNMLL 168 (286)
Q Consensus 142 ~~~g~~v~~~g~~g~a~~~Kl~~n~~~ 168 (286)
+.+|.+++++++.+.+..+|.+.|++.
T Consensus 165 ~~~G~~~~~~~~i~~a~~~K~i~~l~~ 191 (209)
T 2raf_A 165 ADSPLEVKDAGKLKRARELEAMGFMQM 191 (209)
T ss_dssp TTSSCEEEEEESGGGHHHHHHHHHHHH
T ss_pred HHcCCceEeCCCHhHHHHhcchHHHHH
Confidence 999999999999999999999988864
|
| >1wdk_A Fatty oxidation complex alpha subunit; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: a.100.1.3 a.100.1.3 c.2.1.6 c.14.1.3 PDB: 1wdl_A* 1wdm_A* 2d3t_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.1e-15 Score=144.40 Aligned_cols=172 Identities=17% Similarity=0.241 Sum_probs=122.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH-----------HHcC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL-----------AKEG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l-----------~~~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+.+|.+|+++||+|++||+++++++.. .+.| ++.++++ +++++||+||.|||.
T Consensus 325 MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~aDlVIeaV~e 403 (715)
T 1wdk_A 325 MGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSY-GDFGNVDLVVEAVVE 403 (715)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSS-TTGGGCSEEEECCCS
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcCeEEECCH-HHHCCCCEEEEcCCC
Confidence 89999999999999999999999887653 2234 3456677 778999999999998
Q ss_pred hhHHHHHhcCCccccccCCCCCEEEEc-CCCCchHHHHHHHHHHh----cCCceEeccCCCCHHhhhcCceEEEecC---
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVIDS-STVDPQVPQTLSNLARE----KQITFLDAPVSGGTKAAQEATLTFMVGG--- 129 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivid~-st~~p~~~~~~~~~~~~----~g~~~~~~pv~g~~~~a~~g~l~~~~gg--- 129 (286)
+.+++..+.. .+.+.++++++|++. ||+++. ++++.+.. .|.+|++ |+. ...++.++.|
T Consensus 404 ~~~vk~~v~~--~l~~~~~~~~IlasntStl~i~---~la~~~~~~~~~ig~hf~~-P~~-------~~~lvevv~g~~t 470 (715)
T 1wdk_A 404 NPKVKQAVLA--EVENHVREDAILASNTSTISIS---LLAKALKRPENFVGMHFFN-PVH-------MMPLVEVIRGEKS 470 (715)
T ss_dssp CHHHHHHHHH--HHHTTSCTTCEEEECCSSSCHH---HHGGGCSCGGGEEEEECCS-STT-------TCCEEEEEECSSC
T ss_pred CHHHHHHHHH--HHHhhCCCCeEEEeCCCCCCHH---HHHHHhcCccceEEEEccC-Ccc-------cCceEEEEECCCC
Confidence 7776554432 366678889988864 444443 33333211 1344443 332 2234444444
Q ss_pred CHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy764 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVI 196 (286)
Q Consensus 130 ~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~ 196 (286)
+++.++++.++++.+|+.++++++. .|. ++|+++. ..++|++.++++ |+|++++.+++
T Consensus 471 ~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~Nril~----~~~~Ea~~l~~~-G~~~~~id~~~ 528 (715)
T 1wdk_A 471 SDLAVATTVAYAKKMGKNPIVVNDC-PGF---LVNRVLF----PYFGGFAKLVSA-GVDFVRIDKVM 528 (715)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESC-TTT---THHHHHH----HHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCEeEEEcCC-CCh---hhhHHHH----HHHHHHHHHHHC-CCCHHHHHHHH
Confidence 7899999999999999999999873 222 4555544 358999999997 99999999998
|
| >2wtb_A MFP2, fatty acid multifunctional protein (ATMFP2); oxidoreductase, peroxisomes, beta-oxidation, fatty acid oxidation; 2.50A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.59 E-value=4e-15 Score=142.66 Aligned_cols=172 Identities=16% Similarity=0.148 Sum_probs=122.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------cC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------EG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+.+|.+|+++||+|++||+++++++...+ .| ++.++++ +++++||+||.|||.
T Consensus 323 MG~~iA~~la~aG~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~G~~~~~~~~~~~~~i~~~~d~-~~~~~aDlVIeaVpe 401 (725)
T 2wtb_A 323 MGSGIATALILSNYPVILKEVNEKFLEAGIGRVKANLQSRVRKGSMSQEKFEKTMSLLKGSLDY-ESFRDVDMVIEAVIE 401 (725)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHHHHHTTC----CTTHHHHTTTSEEEESSS-GGGTTCSEEEECCCS
T ss_pred hhHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHhcceEEeCCH-HHHCCCCEEEEcCcC
Confidence 8999999999999999999999988765422 22 2455667 678899999999998
Q ss_pred hhHHHHHhcCCccccccCCCCCEEEEc-CCCCchHHHHHHHHHHh----cCCceEeccCCCCHHhhhcCceEEEecC---
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVIDS-STVDPQVPQTLSNLARE----KQITFLDAPVSGGTKAAQEATLTFMVGG--- 129 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivid~-st~~p~~~~~~~~~~~~----~g~~~~~~pv~g~~~~a~~g~l~~~~gg--- 129 (286)
+.+++..+.+ .+.+.++++.+|++. ||+++. ++++.+.. .|.+|++ |+.. ..++.++.|
T Consensus 402 ~~~vk~~v~~--~l~~~~~~~~IlasntStl~i~---~la~~~~~p~~~iG~hf~~-P~~~-------~~lvevv~g~~t 468 (725)
T 2wtb_A 402 NISLKQQIFA--DLEKYCPQHCILASNTSTIDLN---KIGERTKSQDRIVGAHFFS-PAHI-------MPLLEIVRTNHT 468 (725)
T ss_dssp CHHHHHHHHH--HHHHHSCTTCEEEECCSSSCHH---HHTTTCSCTTTEEEEEECS-STTT-------CCEEEEEECSSC
T ss_pred CHHHHHHHHH--HHHhhCCCCcEEEeCCCCCCHH---HHHHHhcCCCCEEEecCCC-Cccc-------CceEEEEECCCC
Confidence 8776554432 366678888888764 444443 23332211 2344544 4322 234555555
Q ss_pred CHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH
Q psy764 130 DKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVI 196 (286)
Q Consensus 130 ~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~ 196 (286)
++++++++.++++.+|+.++++++. .|. ++|+++. ..++|++.++++ |+|++++.+++
T Consensus 469 ~~e~~~~~~~l~~~lGk~~v~v~d~-~Gf---i~Nril~----~~~~Ea~~l~~~-G~~~e~id~~~ 526 (725)
T 2wtb_A 469 SAQVIVDLLDVGKKIKKTPVVVGNC-TGF---AVNRMFF----PYTQAAMFLVEC-GADPYLIDRAI 526 (725)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEEESS-TTT---THHHHHH----HHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCEEEEECCC-ccH---HHHHHHH----HHHHHHHHHHHC-CCCHHHHHHHH
Confidence 7899999999999999999999873 222 4455544 358999999998 99999999998
|
| >2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=6.7e-15 Score=121.21 Aligned_cols=159 Identities=16% Similarity=0.107 Sum_probs=114.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.++.+|.+.|++|++|||++++.+.+.+.|+... +..++++++|+||+|+|. ..+++++. +.+.+ ++++|
T Consensus 39 ~G~~la~~l~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~DvVi~av~~-~~~~~v~~----l~~~~-~~~~v 111 (215)
T 2vns_A 39 FARSLATRLVGSGFKVVVGSRNPKRTARLFPSAAQVT-FQEEAVSSPEVIFVAVFR-EHYSSLCS----LSDQL-AGKIL 111 (215)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSHHHHHHHSBTTSEEE-EHHHHTTSCSEEEECSCG-GGSGGGGG----GHHHH-TTCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCcee-cHHHHHhCCCEEEECCCh-HHHHHHHH----HHHhc-CCCEE
Confidence 7999999999999999999999999888876677765 788899999999999995 56666652 44444 79999
Q ss_pred EEcCCCCchHHHH----HHHHHHhc--CCceEec--cCCCCHHh--hhcCc-eEEEecCCHhhHHHHHHHHHHhcCCeEe
Q psy764 82 IDSSTVDPQVPQT----LSNLAREK--QITFLDA--PVSGGTKA--AQEAT-LTFMVGGDKSSLEKAKPILKCMGRNIVH 150 (286)
Q Consensus 82 id~st~~p~~~~~----~~~~~~~~--g~~~~~~--pv~g~~~~--a~~g~-l~~~~gg~~~~~~~~~~ll~~~g~~v~~ 150 (286)
||+++..+..... ..+.+.+. +.+++.+ ++.+.+.. ...+. ..+++|++++.+++++++|+.+|.++++
T Consensus 112 v~~s~g~~~~~l~~~~~~~~~l~~~l~~~~vv~~~n~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~v~~ll~~~G~~~~~ 191 (215)
T 2vns_A 112 VDVSNPTEQEHLQHRESNAEYLASLFPTCTVVKAFNVISAWTLQAGPRDGNRQVPICGDQPEAKRAVSEMALAMGFMPVD 191 (215)
T ss_dssp EECCCCCHHHHHHCSSCHHHHHHHHCTTSEEEEECTTBCHHHHHTCSCSSCCEEEEEESCHHHHHHHHHHHHHTTCEEEE
T ss_pred EEeCCCcccccccccccHHHHHHHHCCCCeEEeccccccHhHhcccccCCceeEEEecCCHHHHHHHHHHHHHcCCceEe
Confidence 9999988754321 11111111 2233322 22111101 11122 3677888999999999999999999999
Q ss_pred cCCcchHHHHHHHHHHH
Q psy764 151 CGDSGNGQVAKLCNNML 167 (286)
Q Consensus 151 ~g~~g~a~~~Kl~~n~~ 167 (286)
+|+.|+|..++...+++
T Consensus 192 ~g~~~~~~~~e~~~~~~ 208 (215)
T 2vns_A 192 MGSLASAWEVEAMPLRL 208 (215)
T ss_dssp CCSGGGHHHHHHSCCBC
T ss_pred ecchhhhhHhhhhhhhh
Confidence 99999999998554443
|
| >3ghy_A Ketopantoate reductase protein; oxidoreductase, NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 2.00A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-13 Score=121.64 Aligned_cols=241 Identities=14% Similarity=0.149 Sum_probs=154.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc-------------ccCCHHHHhhcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN-------------MALSLSTLASGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------------~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||+++|..|+++|++|++|+|+ ++.+.+.+.|.. .++++++ +..+|+||+|||. .++++++..
T Consensus 14 ~G~~~a~~L~~~g~~V~~~~r~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~Vilavk~-~~~~~~~~~- 89 (335)
T 3ghy_A 14 VGGYLGARLALAGEAINVLARG-ATLQALQTAGLRLTEDGATHTLPVRATHDAAA-LGEQDVVIVAVKA-PALESVAAG- 89 (335)
T ss_dssp HHHHHHHHHHHTTCCEEEECCH-HHHHHHHHTCEEEEETTEEEEECCEEESCHHH-HCCCSEEEECCCH-HHHHHHHGG-
T ss_pred HHHHHHHHHHHCCCEEEEEECh-HHHHHHHHCCCEEecCCCeEEEeeeEECCHHH-cCCCCEEEEeCCc-hhHHHHHHH-
Confidence 7999999999999999999996 677778776653 2456766 5899999999996 688999875
Q ss_pred ccccccCCCCCEEEEcCCCCc------------------hHHHHHHHHHHhcCCceEeccCC-----CCHHhhh-cCceE
Q psy764 69 DGILKHAKPGVIVIDSSTVDP------------------QVPQTLSNLAREKQITFLDAPVS-----GGTKAAQ-EATLT 124 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p------------------~~~~~~~~~~~~~g~~~~~~pv~-----g~~~~a~-~g~l~ 124 (286)
+.+.+.++++||.+.+..+ ...+.+.+.+... .++.+-+. .+|..+. .+.-.
T Consensus 90 --l~~~l~~~~~iv~~~nGi~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~--~v~~gv~~~~a~~~~pg~v~~~~~g~ 165 (335)
T 3ghy_A 90 --IAPLIGPGTCVVVAMNGVPWWFFDRPGPLQGQRLQAVDPHGRIAQAIPTR--HVLGCVVHLTCATVSPGHIRHGNGRR 165 (335)
T ss_dssp --GSSSCCTTCEEEECCSSSCTTTTCSSSTTTTCCCTTTCTTSHHHHHSCGG--GEEEEEECCCEEESSTTEEEECSCCE
T ss_pred --HHhhCCCCCEEEEECCCCccccccccccccccccccCCcHHHHHHhcCcc--cEEEEEEEEEEEEcCCcEEEECCCCe
Confidence 7888889999999877742 1122344444322 22221111 1222221 11112
Q ss_pred EEec----CCHhhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHH---------------------HHHHHHHHHHHHHH
Q psy764 125 FMVG----GDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNN---------------------MLLGVTMMGVAEAM 179 (286)
Q Consensus 125 ~~~g----g~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n---------------------~~~~~~~~~~~Ea~ 179 (286)
+.+| .+.+..+.+..+|+.-+.+++...++-...-.|++.| .....+..++.|+.
T Consensus 166 ~~iG~~~~~~~~~~~~l~~~l~~~g~~~~~~~di~~~~w~Kl~~na~~N~l~al~~~~~g~~~~~~~~~~l~~~~~~E~~ 245 (335)
T 3ghy_A 166 LILGEPAGGASPRLASIAALFGRAGLQAECSEAIQRDIWFKLWGNMTMNPVSVLTGATCDRILDDPLVSAFCLAVMAEAK 245 (335)
T ss_dssp EEEECTTCSCCHHHHHHHHHHHHTTCEEEECSCHHHHHHHHHHTTTTHHHHHHHHCCCHHHHHHSHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCcCHHHHHHHHHHHhCCCCcEeCchHHHHHHHHHHHHhhhhHHHHHhCCChHHHhcChHHHHHHHHHHHHHH
Confidence 4444 2456678889999998887777666655555564433 34566788999999
Q ss_pred HHHHHcCCCH----HHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCc-cchhHHHHHHHHHHHHhhcCCCchH
Q psy764 180 NLGVKLGMNA----KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGF-KISLLAKDMKLAEDLANRCTAQTDL 254 (286)
Q Consensus 180 ~l~~~~Gl~~----~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f-~~~~~~kd~~~~~~~a~~~g~~~p~ 254 (286)
+++++.|+++ +..+++..... .++ +.++ .|+..+- .+ +.-.=...+.++++++|+++|.
T Consensus 246 ~va~a~G~~~~~~~~~~~~~~~~~~------~~~---sSM~------qD~~~gr~~t-Eid~i~G~vv~~a~~~gv~~P~ 309 (335)
T 3ghy_A 246 AIGARIGCPIEQSGEARSAVTRQLG------AFK---TSML------QDAEAGRGPL-EIDALVASVREIGLHVGVPTPQ 309 (335)
T ss_dssp HHHHTTTCCCCSCHHHHHHHHHTTC------SCC---CTTT------C-----CCCC-CHHHHTHHHHHHHHHHTCCCHH
T ss_pred HHHHHcCCCCCccHHHHHHHHhccC------CCC---cHHH------HHHHcCCCCc-hHHHHhhHHHHHHHHhCCCCCH
Confidence 9999999764 33444433221 111 1222 1222221 11 2222345689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy764 255 SKLATSIYKRLM 266 (286)
Q Consensus 255 ~~~~~~~~~~a~ 266 (286)
.+.++++++...
T Consensus 310 ~~~l~~li~~~e 321 (335)
T 3ghy_A 310 IDTLLGLVRLHA 321 (335)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-14 Score=130.09 Aligned_cols=173 Identities=14% Similarity=0.191 Sum_probs=122.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------cC-----------CcccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------EG-----------ANMALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-----------~~~~~s~~e~~~~adivi~~v~~~~ 59 (286)
||+.+|.+|+++||+|++||+++++++...+ .| ..++.++ +.+++||+||.|||...
T Consensus 48 MG~~iA~~la~~G~~V~l~D~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~~-~~~~~aDlVIeaVpe~~ 126 (463)
T 1zcj_A 48 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSST-KELSTVDLVVEAVFEDM 126 (463)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCEEEESCG-GGGTTCSEEEECCCSCH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhhhcCCH-HHHCCCCEEEEcCCCCH
Confidence 8999999999999999999999987765432 11 2345667 56789999999999865
Q ss_pred HHH-HHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHh----cCCceEeccCCCCHHhhhcCceEEEec---CCH
Q psy764 60 DVL-DAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLARE----KQITFLDAPVSGGTKAAQEATLTFMVG---GDK 131 (286)
Q Consensus 60 ~~~-~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~----~g~~~~~~pv~g~~~~a~~g~l~~~~g---g~~ 131 (286)
+++ .++.. +.+.++++++|++ +|..+... ++++.+.. .|.+|+ .|+. ...+..++. +++
T Consensus 127 ~~k~~v~~~---l~~~~~~~~ii~s-nTs~~~~~-~la~~~~~~~~~ig~hf~-~P~~-------~~~lvevv~g~~t~~ 193 (463)
T 1zcj_A 127 NLKKKVFAE---LSALCKPGAFLCT-NTSALNVD-DIASSTDRPQLVIGTHFF-SPAH-------VMRLLEVIPSRYSSP 193 (463)
T ss_dssp HHHHHHHHH---HHHHSCTTCEEEE-CCSSSCHH-HHHTTSSCGGGEEEEEEC-SSTT-------TCCEEEEEECSSCCH
T ss_pred HHHHHHHHH---HHhhCCCCeEEEe-CCCCcCHH-HHHHHhcCCcceEEeecC-CCcc-------cceeEEEeCCCCCCH
Confidence 554 45443 6667788888887 56555544 55554321 134444 3432 223344444 478
Q ss_pred hhHHHHHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 132 SSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 132 ~~~~~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
+.++++.++++.+|+.++++++. .+. ++|+++.. .++|++.+.++ |++++++.+++.
T Consensus 194 e~~~~~~~l~~~lGk~~v~v~~~-~gf---i~Nrll~~----~~~ea~~l~~~-G~~~~~id~~~~ 250 (463)
T 1zcj_A 194 TTIATVMSLSKKIGKIGVVVGNC-YGF---VGNRMLAP----YYNQGFFLLEE-GSKPEDVDGVLE 250 (463)
T ss_dssp HHHHHHHHHHHHTTCEEEEBCCS-TTT---THHHHHHH----HHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCEEEEECCC-ccH---HHHHHHHH----HHHHHHHHHHc-CCCHHHHHHHHH
Confidence 99999999999999999999862 222 34444433 35899999887 899999999886
|
| >3hwr_A 2-dehydropantoate 2-reductase; YP_299159.1, PANE/APBA family ketopantoate reductase, struct genomics, joint center for structural genomics; HET: NDP BCN; 2.15A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-13 Score=117.18 Aligned_cols=238 Identities=14% Similarity=0.135 Sum_probs=154.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc-------------ccCCHHHHhhcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN-------------MALSLSTLASGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~-------------~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||+++|..|+++|++|++| +++++.+.+.+.|.. .++++++ ++.+|+||+|||. .++++++..
T Consensus 30 ~G~~~a~~L~~~G~~V~l~-~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~D~vilavk~-~~~~~~l~~- 105 (318)
T 3hwr_A 30 VGCYYGGMLARAGHEVILI-ARPQHVQAIEATGLRLETQSFDEQVKVSASSDPSA-VQGADLVLFCVKS-TDTQSAALA- 105 (318)
T ss_dssp HHHHHHHHHHHTTCEEEEE-CCHHHHHHHHHHCEEEECSSCEEEECCEEESCGGG-GTTCSEEEECCCG-GGHHHHHHH-
T ss_pred HHHHHHHHHHHCCCeEEEE-EcHhHHHHHHhCCeEEEcCCCcEEEeeeeeCCHHH-cCCCCEEEEEccc-ccHHHHHHH-
Confidence 7999999999999999999 999999988876532 3455544 5899999999996 588999875
Q ss_pred ccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEecc-----CCCCHHhhh-cCceEEEecCCHhhHHHHHHHHH
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP-----VSGGTKAAQ-EATLTFMVGGDKSSLEKAKPILK 142 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~p-----v~g~~~~a~-~g~l~~~~gg~~~~~~~~~~ll~ 142 (286)
+.+.+.++++||.+++..... ..+.+.+. . .++.+. ...+|..+. .+.-.+.+|. .+..+.+.++|+
T Consensus 106 --l~~~l~~~~~iv~~~nGi~~~-~~l~~~~~-~--~vl~g~~~~~a~~~gP~~~~~~~~g~~~ig~-~~~~~~l~~~l~ 178 (318)
T 3hwr_A 106 --MKPALAKSALVLSLQNGVENA-DTLRSLLE-Q--EVAAAVVYVATEMAGPGHVRHHGRGELVIEP-TSHGANLAAIFA 178 (318)
T ss_dssp --HTTTSCTTCEEEEECSSSSHH-HHHHHHCC-S--EEEEEEEEEEEEEEETTEEEEEEEEEEEECC-CTTTHHHHHHHH
T ss_pred --HHHhcCCCCEEEEeCCCCCcH-HHHHHHcC-C--cEEEEEEEEeEEEcCCeEEEEcCCceEEEcC-CHHHHHHHHHHH
Confidence 778888999999877665432 24444442 1 122211 111222221 1111233454 445578899999
Q ss_pred HhcCCeEecCCcchHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHcCCCH-----HHHHHHH
Q psy764 143 CMGRNIVHCGDSGNGQVAKLCNNMLL---------------------GVTMMGVAEAMNLGVKLGMNA-----KLLSDVI 196 (286)
Q Consensus 143 ~~g~~v~~~g~~g~a~~~Kl~~n~~~---------------------~~~~~~~~Ea~~l~~~~Gl~~-----~~~~~~~ 196 (286)
..+.+++...++-...-.|++.|..+ ..+..++.|+..++++.|++. +.+++++
T Consensus 179 ~~~~~~~~~~Di~~~~w~Kl~~N~~~n~l~al~~~~~g~l~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~ 258 (318)
T 3hwr_A 179 AAGVPVETSDNVRGALWAKLILNCAYNALSAITQLPYGRLVRGEGVEAVMRDVMEECFAVARAEGVKLPDDVALAIRRIA 258 (318)
T ss_dssp HTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSTTHHHHHHHHHHHHHHHHHHTTCCCCTTHHHHHHHHH
T ss_pred hCCCCcEechHHHHHHHHHHHHHhhhhHHHHHHCCCHHHHhcChhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHH
Confidence 99988887778777888888777532 335578899999999999762 3333433
Q ss_pred HccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy764 197 NTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLM 266 (286)
Q Consensus 197 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 266 (286)
.... ... +.++++.. .+... -++.. ...+.+.++++|+++|..+.++++++...
T Consensus 259 ~~~~-~~~--------sSM~qD~~-~gr~t---Eid~i---~G~vv~~a~~~gv~tP~~~~l~~ll~~~e 312 (318)
T 3hwr_A 259 ETMP-RQS--------SSTAQDLA-RGKRS---EIDHL---NGLIVRRGDALGIPVPANRVLHALVRLIE 312 (318)
T ss_dssp HHST-TCC--------CHHHHHHH-TTCCC---SGGGT---HHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HhcC-CCC--------cHHHHHHH-cCChh---HHHHH---HHHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 3221 110 11111110 11100 11221 34588999999999999999999887543
|
| >3i83_A 2-dehydropantoate 2-reductase; structural genomics, oxidoreductase, NADP, pantothenate BIOS PSI-2, protein structure initiative; 1.90A {Methylococcus capsulatus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-12 Score=114.13 Aligned_cols=240 Identities=12% Similarity=0.057 Sum_probs=153.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC---------------cccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA---------------NMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~---------------~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
||+.+|..|.++|++|++|+|++ .+.+.+.|+ .++.+++++.+.+|+||+|||. .++++++.
T Consensus 13 iG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~Gl~~~~~~~g~~~~~~~~~~~~~~~~~~~~DlVilavK~-~~~~~~l~ 89 (320)
T 3i83_A 13 IGSFYGALLAKTGHCVSVVSRSD--YETVKAKGIRIRSATLGDYTFRPAAVVRSAAELETKPDCTLLCIKV-VEGADRVG 89 (320)
T ss_dssp HHHHHHHHHHHTTCEEEEECSTT--HHHHHHHCEEEEETTTCCEEECCSCEESCGGGCSSCCSEEEECCCC-CTTCCHHH
T ss_pred HHHHHHHHHHhCCCeEEEEeCCh--HHHHHhCCcEEeecCCCcEEEeeeeeECCHHHcCCCCCEEEEecCC-CChHHHHH
Confidence 79999999999999999999986 266665543 2345677776789999999996 46777776
Q ss_pred CCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhh------cCceEEEec----CCHhhHHH
Q psy764 67 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQ------EATLTFMVG----GDKSSLEK 136 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~------~g~l~~~~g----g~~~~~~~ 136 (286)
. +.+.+.++++||.+.+..... +.+.+.+... .++.+|++.+..... .+.-.+.+| .+.+..+.
T Consensus 90 ~---l~~~l~~~t~Iv~~~nGi~~~-~~l~~~~~~~--~vl~g~~~~~a~~~~pg~v~~~~~~~~~ig~~~~~~~~~~~~ 163 (320)
T 3i83_A 90 L---LRDAVAPDTGIVLISNGIDIE-PEVAAAFPDN--EVISGLAFIGVTRTAPGEIWHQAYGRLMLGNYPGGVSERVKT 163 (320)
T ss_dssp H---HTTSCCTTCEEEEECSSSSCS-HHHHHHSTTS--CEEEEEEEEEEEEEETTEEEEEEEEEEEEEESSSCCCHHHHH
T ss_pred H---HHhhcCCCCEEEEeCCCCChH-HHHHHHCCCC--cEEEEEEEeceEEcCCCEEEECCCCEEEEecCCCCccHHHHH
Confidence 4 777788889888876654321 3344444332 466666543211111 111134443 34567788
Q ss_pred HHHHHHHhcCCeEecCCcchHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHcCCCH-----HH
Q psy764 137 AKPILKCMGRNIVHCGDSGNGQVAKLCNNML--------------------LGVTMMGVAEAMNLGVKLGMNA-----KL 191 (286)
Q Consensus 137 ~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~--------------------~~~~~~~~~Ea~~l~~~~Gl~~-----~~ 191 (286)
+.++|+.-+.++.+..++-...--|++-|.. ...+..++.|+.+++++.|++. +.
T Consensus 164 l~~~l~~~~~~~~~~~di~~~~w~Kl~~N~~~N~ltal~~~~~g~~~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~ 243 (320)
T 3i83_A 164 LAAAFEEAGIDGIATENITTARWQKCVWNAAFNPLSVLSGGLDTLDILSTQEGFVRAIMQEIRAVAAANGHPLPEDIVEK 243 (320)
T ss_dssp HHHHHHHTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHCHHHHHHHHHHHHHHHHHTTCCCCTTHHHH
T ss_pred HHHHHHhCCCCceECHHHHHHHHHHHHHHHhhhHHHHHHCCCHHHHHhCcHHHHHHHHHHHHHHHHHHcCCCCChHHHHH
Confidence 9999999998888877877777778776642 2345678999999999999863 23
Q ss_pred HHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy764 192 LSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLM 266 (286)
Q Consensus 192 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 266 (286)
++++....+. ++ +.++++.. .+. .+ +.--=...+.++++++|+++|+.+.++++++...
T Consensus 244 ~~~~~~~~~~------~~---sSM~qD~~-~gr-----~t-Eid~i~G~vv~~a~~~gv~~P~~~~l~~~l~~~e 302 (320)
T 3i83_A 244 NVASTYKMPP------YK---TSMLVDFE-AGQ-----PM-ETEVILGNAVRAGRRTRVAIPHLESVYALMKLLE 302 (320)
T ss_dssp HHHHHHHSCC------CC---CHHHHHHH-HTC-----CC-CHHHHTHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCC------CC---CcHHHHHH-hCC-----Cc-hHHHHccHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 3333222110 00 01111000 010 00 1111234689999999999999999998876543
|
| >3hn2_A 2-dehydropantoate 2-reductase; PSI-2, NYSGXRC, structural GE protein structure initiative; 2.50A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=99.51 E-value=2.6e-12 Score=111.69 Aligned_cols=243 Identities=11% Similarity=0.081 Sum_probs=150.5
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc--------------ccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN--------------MALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~--------------~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
.||+.+|..|+++|++|++|+|++ .+.+.+.|.. +++++++ +..+|+||+|||. .++++++.
T Consensus 12 aiG~~~a~~L~~~g~~V~~~~r~~--~~~i~~~g~~~~~~~g~~~~~~~~~~~~~~~-~~~~D~vilavk~-~~~~~~l~ 87 (312)
T 3hn2_A 12 ALGLYYGALLQRSGEDVHFLLRRD--YEAIAGNGLKVFSINGDFTLPHVKGYRAPEE-IGPMDLVLVGLKT-FANSRYEE 87 (312)
T ss_dssp TTHHHHHHHHHHTSCCEEEECSTT--HHHHHHTCEEEEETTCCEEESCCCEESCHHH-HCCCSEEEECCCG-GGGGGHHH
T ss_pred HHHHHHHHHHHHCCCeEEEEEcCc--HHHHHhCCCEEEcCCCeEEEeeceeecCHHH-cCCCCEEEEecCC-CCcHHHHH
Confidence 389999999999999999999986 3677766532 2345544 6789999999995 67888887
Q ss_pred CCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEec------cCCCCHHhhh-cCceEEEec----CCHhhHH
Q psy764 67 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA------PVSGGTKAAQ-EATLTFMVG----GDKSSLE 135 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~------pv~g~~~~a~-~g~l~~~~g----g~~~~~~ 135 (286)
. +.+.+.++++||.+...... .+.+.+.+... .++.+ -.. +|.... .+.-.+.+| .+.+..+
T Consensus 88 ~---l~~~l~~~~~iv~l~nGi~~-~~~l~~~~~~~--~v~~~~~~~~a~~~-~p~~v~~~~~g~~~ig~~~~~~~~~~~ 160 (312)
T 3hn2_A 88 L---IRPLVEEGTQILTLQNGLGN-EEALATLFGAE--RIIGGVAFLCSNRG-EPGEVHHLGAGRIILGEFLPRDTGRIE 160 (312)
T ss_dssp H---HGGGCCTTCEEEECCSSSSH-HHHHHHHTCGG--GEEEEEEEEECCBC-SSSEEEECEEEEEEEEESSCCCSHHHH
T ss_pred H---HHhhcCCCCEEEEecCCCCc-HHHHHHHCCCC--cEEEEEEEeeeEEc-CCcEEEECCCCeEEEecCCCCccHHHH
Confidence 5 77788889999987765432 13444444332 22221 111 122111 111123333 2356678
Q ss_pred HHHHHHHHhcCCeEecCCcchHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHHHcC--CC--H-
Q psy764 136 KAKPILKCMGRNIVHCGDSGNGQVAKLCNNML---------------------LGVTMMGVAEAMNLGVKLG--MN--A- 189 (286)
Q Consensus 136 ~~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~---------------------~~~~~~~~~Ea~~l~~~~G--l~--~- 189 (286)
.+.++|+.-+.+++...++-...--|++-|.. ...+..++.|+.+++++.| ++ .
T Consensus 161 ~l~~~l~~~g~~~~~~~di~~~~w~Kl~~N~~~n~l~al~~~~~G~l~~~~~~~~l~~~~~~E~~~va~a~G~~~~~~~~ 240 (312)
T 3hn2_A 161 ELAAMFRQAGVDCRTTDDLKRARWEKLVWNIPFNGLCALLQQPVNLILARDVSRKLVRGIMLEVIAGANAQGLATFIADG 240 (312)
T ss_dssp HHHHHHHHTTCCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTSHHHHHHHHHHHHHHHHHHHTSCCSSCCCTT
T ss_pred HHHHHHHhCCCCcEEChHHHHHHHHHHHHHHhHHHHHHHHCCCHHHHHhChhHHHHHHHHHHHHHHHHHHcCCccCCCHH
Confidence 88999999998877776765556666555543 3445678899999999999 54 2
Q ss_pred --HHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 190 --KLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 190 --~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
+.++++....+ +++ +.++++.. .+. .+ +.--=...+.++++++|+++|+.+.++++++....
T Consensus 241 ~~~~~~~~~~~~~------~~~---sSM~qD~~-~gr-----~t-Eid~i~G~vv~~a~~~gv~~P~~~~l~~ll~~~~~ 304 (312)
T 3hn2_A 241 YVDDMLEFTDAMG------EYK---PSMEIDRE-EGR-----PL-EIAAIFRTPLAYGAREGIAMPRVEMLATLLEQATG 304 (312)
T ss_dssp HHHHHHHHHTTSC------SCC---CHHHHHHH-TTC-----CC-CHHHHTHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCC------CCC---chHHHHHH-hCC-----Cc-cHHHHhhHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 22333222111 010 01111100 110 01 11112346899999999999999999999887666
Q ss_pred cCC
Q psy764 268 KGC 270 (286)
Q Consensus 268 ~g~ 270 (286)
.|+
T Consensus 305 ~~~ 307 (312)
T 3hn2_A 305 EGH 307 (312)
T ss_dssp C--
T ss_pred ccc
Confidence 554
|
| >3dfu_A Uncharacterized protein from 6-phosphogluconate dehydrogenase-like family; putative rossmann-like dehydrogenase, structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.45 E-value=8.8e-13 Score=108.73 Aligned_cols=144 Identities=15% Similarity=0.078 Sum_probs=104.8
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+||++||++|.++||+|.+||+. ++ ++++| |+|+|+. ++.+++.+ +.+.+++|++
T Consensus 16 ~~G~sLA~~L~~~G~~V~~~~~~------------------~~-~~~aD--ilavP~~-ai~~vl~~---l~~~l~~g~i 70 (232)
T 3dfu_A 16 SSTVNMAEKLDSVGHYVTVLHAP------------------ED-IRDFE--LVVIDAH-GVEGYVEK---LSAFARRGQM 70 (232)
T ss_dssp CCCSCHHHHHHHTTCEEEECSSG------------------GG-GGGCS--EEEECSS-CHHHHHHH---HHTTCCTTCE
T ss_pred HHHHHHHHHHHHCCCEEEEecCH------------------HH-hccCC--EEEEcHH-HHHHHHHH---HHHhcCCCCE
Confidence 58999999999999999999983 22 57899 9999975 88998864 7778889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcchHHH
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQV 159 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g~a~~ 159 (286)
|+|+|+..+... .+.+..+|..|+. +|+++. ..++.+++++.++.++++++.+|.+++++++......
T Consensus 71 vvd~sgs~~~~v---l~~~~~~g~~fvg~HPm~g~--------~~~i~a~d~~a~~~l~~L~~~lG~~vv~~~~~~hd~~ 139 (232)
T 3dfu_A 71 FLHTSLTHGITV---MDPLETSGGIVMSAHPIGQD--------RWVASALDELGETIVGLLVGELGGSIVEIADDKRAQL 139 (232)
T ss_dssp EEECCSSCCGGG---GHHHHHTTCEEEEEEEEETT--------EEEEEESSHHHHHHHHHHHHHTTCEECCCCGGGHHHH
T ss_pred EEEECCcCHHHH---HHHHHhCCCcEEEeeeCCCC--------ceeeeCCCHHHHHHHHHHHHHhCCEEEEeCHHHHhHH
Confidence 999876554432 2233467888885 798764 2556667888999999999999999999987443333
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy764 160 AK--LCNNMLLGVTMMGVAEAMNLGVK 184 (286)
Q Consensus 160 ~K--l~~n~~~~~~~~~~~Ea~~l~~~ 184 (286)
.- ...|.+ +..+.++..+.++
T Consensus 140 ~AAvsh~nhL----v~L~~~A~~ll~~ 162 (232)
T 3dfu_A 140 AAALTYAGFL----STLQRDASYFLDE 162 (232)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHH
Confidence 11 123433 3345555555543
|
| >1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6 | Back alignment and structure |
|---|
Probab=99.43 E-value=1.1e-12 Score=115.22 Aligned_cols=182 Identities=14% Similarity=0.141 Sum_probs=118.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhc-CCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYD-GSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~-~~~~l~~~l~~g~ 79 (286)
||+++|.+|.++|++|++|||++++ .+.+.+.|+... ++.++++++|+||+|+|+ ....+++. . +.+.+++++
T Consensus 27 mG~alA~~L~~~G~~V~~~~~~~~~~~~~a~~~G~~~~-~~~e~~~~aDvVilavp~-~~~~~v~~~~---i~~~l~~~~ 101 (338)
T 1np3_A 27 QGHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKVA-DVKTAVAAADVVMILTPD-EFQGRLYKEE---IEPNLKKGA 101 (338)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEEE-CHHHHHHTCSEEEECSCH-HHHHHHHHHH---TGGGCCTTC
T ss_pred HHHHHHHHHHHCcCEEEEEECChHHHHHHHHHCCCEEc-cHHHHHhcCCEEEEeCCc-HHHHHHHHHH---HHhhCCCCC
Confidence 8999999999999999999999876 555566788766 899999999999999995 56688876 4 777788999
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHh-----hhcCceEEEe---cCCHhhHHHHHHHHHHhcC-C--
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKA-----AQEATLTFMV---GGDKSSLEKAKPILKCMGR-N-- 147 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~-----a~~g~l~~~~---gg~~~~~~~~~~ll~~~g~-~-- 147 (286)
+|++++++.. .+.......++.++ .+|....... ...|...+++ +.+++..+.++.+++.+|. +
T Consensus 102 ivi~~~gv~~----~~~~~~~~~~~~vv~~~P~gp~~a~~~l~~~G~g~~~ii~~~~~~~~~a~~~~~~l~~~lG~~~ag 177 (338)
T 1np3_A 102 TLAFAHGFSI----HYNQVVPRADLDVIMIAPKAPGHTVRSEFVKGGGIPDLIAIYQDASGNAKNVALSYACGVGGGRTG 177 (338)
T ss_dssp EEEESCCHHH----HTTSSCCCTTCEEEEEEESSCSHHHHHHHHTTCCCCEEEEEEECSSSCHHHHHHHHHHHTTHHHHC
T ss_pred EEEEcCCchh----HHHhhcCCCCcEEEeccCCCCchhHHHHHhccCCCeEEEEecCCCCHHHHHHHHHHHHHcCCCccc
Confidence 9999865322 11111112344455 4562222111 1124434433 3357788999999999998 5
Q ss_pred eEecCCcchHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHH
Q psy764 148 IVHCGDSGNGQVAKLCNN-MLLGVTMMGVAEAMNLGVKLGMNAKLL 192 (286)
Q Consensus 148 v~~~g~~g~a~~~Kl~~n-~~~~~~~~~~~Ea~~l~~~~Gl~~~~~ 192 (286)
++.+..........+..+ .+.......+..++....+.|++++..
T Consensus 178 v~~~~~~~~~~~~~~~s~~~l~G~lp~~ia~~~e~l~~~Gl~~~~a 223 (338)
T 1np3_A 178 IIETTFKDETETDLFGEQAVLCGGCVELVKAGFETLVEAGYAPEMA 223 (338)
T ss_dssp EEECCHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred eEeechhcccchHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHH
Confidence 666653333344444444 222222333344444456899998755
|
| >2i99_A MU-crystallin homolog; thyroid hormine binding protein, oxidoreductase; HET: NDP; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-15 Score=127.76 Aligned_cols=136 Identities=19% Similarity=0.275 Sum_probs=104.5
Q ss_pred ccHHHHHHHHhC-CC-cEEEEcCCchHHHHHHHc-C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQ-GH-DVIVYDKNTDASQTLAKE-G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~-~V~~~dr~~~~~~~l~~~-g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||..++.+|.+. |+ +|.+|||++++.+++.+. + +..+++++++++++|+||+|+|.. +.++.. +.++
T Consensus 146 ~g~~~a~~l~~~~g~~~V~v~dr~~~~~~~l~~~~~~~~~~~~~~~e~v~~aDiVi~atp~~---~~v~~~-----~~l~ 217 (312)
T 2i99_A 146 QAYSHYEIFTEQFSFKEVRIWNRTKENAEKFADTVQGEVRVCSSVQEAVAGADVIITVTLAT---EPILFG-----EWVK 217 (312)
T ss_dssp HHHHHHHHHHHHCCCSEEEEECSSHHHHHHHHHHSSSCCEECSSHHHHHTTCSEEEECCCCS---SCCBCG-----GGSC
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHhhCCeEEeCCHHHHHhcCCEEEEEeCCC---CcccCH-----HHcC
Confidence 788999999876 76 899999999999998765 6 777889999999999999999952 344431 4578
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe----ccC-CCCH---HhhhcCceEEEecCCHhhHHHHHHHHHHhcC
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD----APV-SGGT---KAAQEATLTFMVGGDKSSLEKAKPILKCMGR 146 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~----~pv-~g~~---~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~ 146 (286)
+|++|+++++..|.. +++.+.+.+++..|+| +|+ .|.. ..+..+++..+++|+.+.+++..++|+++|.
T Consensus 218 ~g~~vi~~g~~~p~~-~el~~~~~~~g~~~vD~~~~a~~~~G~~~~~~~~~~g~L~~~v~G~~~~~~~~~~vf~~~G~ 294 (312)
T 2i99_A 218 PGAHINAVGASRPDW-RELDDELMKEAVLYVDSQEAALKESGDVLLSGAEIFAELGEVIKGVKPAHCEKTTVFKSLGM 294 (312)
T ss_dssp TTCEEEECCCCSTTC-CSBCHHHHHHSEEEESCHHHHHHHCHHHHTTTCCCCEEHHHHHHTSSCCCTTSCEEEECCCC
T ss_pred CCcEEEeCCCCCCCc-eeccHHHHhcCEEEECCHHHHHhhcCCcccChhhccccHHHHhCCCCCCCCCCcEEEECCCh
Confidence 999999999999975 7777788888999999 676 4433 2344577888899987655554445544444
|
| >3g17_A Similar to 2-dehydropantoate 2-reductase; structural genomics, putative 2-dehydropantoate 2-reductase, protein structure initiative; 2.30A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=99.24 E-value=8.3e-12 Score=107.54 Aligned_cols=240 Identities=9% Similarity=0.043 Sum_probs=145.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC---cccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA---NMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~---~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||+.+|..|.++|++|++|+|+++.++.....|. ....++.+.+ ..+|+||+|||. .++++++.. +.+.+.+
T Consensus 13 ~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~D~vilavk~-~~~~~~l~~---l~~~l~~ 88 (294)
T 3g17_A 13 VGTTIAYELQQSLPHTTLIGRHAKTITYYTVPHAPAQDIVVKGYEDVTNTFDVIIIAVKT-HQLDAVIPH---LTYLAHE 88 (294)
T ss_dssp HHHHHHHHHHHHCTTCEEEESSCEEEEEESSTTSCCEEEEEEEGGGCCSCEEEEEECSCG-GGHHHHGGG---HHHHEEE
T ss_pred HHHHHHHHHHHCCCeEEEEEeccCcEEEEecCCeeccceecCchHhcCCCCCEEEEeCCc-cCHHHHHHH---HHHhhCC
Confidence 7999999999999999999999765432222232 1223445554 789999999995 689999875 7777778
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhc----CCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCC
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREK----QITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~----g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
+++||.+......... +... ++.+..+-.. +|.....+...+.. ++.+..+++.++|+.-+.++++..+
T Consensus 89 ~~~iv~~~nGi~~~~~-----~~~~~v~~g~~~~~a~~~-~pg~v~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~d 161 (294)
T 3g17_A 89 DTLIILAQNGYGQLEH-----IPFKNVCQAVVYISGQKK-GDVVTHFRDYQLRI-QDNALTRQFRDLVQDSQIDIVLEAN 161 (294)
T ss_dssp EEEEEECCSSCCCGGG-----CCCSCEEECEEEEEEEEE-TTEEEEEEEEEEEE-ECSHHHHHHHHHTTTSSCEEEEESS
T ss_pred CCEEEEeccCcccHhh-----CCCCcEEEEEEEEEEEEc-CCCEEEECCCEEec-CccHHHHHHHHHHHhCCCceEEChH
Confidence 8888887765433221 2111 1111111111 11111111112222 4556667888888888877777777
Q ss_pred cchHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHHHcCCC--HHHHHHHHHc---cCCCcccccc
Q psy764 154 SGNGQVAKLCNNML--------------------LGVTMMGVAEAMNLGVKLGMN--AKLLSDVINT---SSGRCWSSEV 208 (286)
Q Consensus 154 ~g~a~~~Kl~~n~~--------------------~~~~~~~~~Ea~~l~~~~Gl~--~~~~~~~~~~---~~~~s~~~~~ 208 (286)
+-...--|++-|.. ...+..++.|+.+++++.|++ ++.+.+.+.. .+....
T Consensus 162 i~~~~w~Kl~~N~~inl~al~~~~~g~~l~~~~~~~l~~~~~~E~~~va~a~G~~l~~~~~~~~~~~~~~~~~~~~---- 237 (294)
T 3g17_A 162 IQQAIWYKLLVNLGINSITALGRQTVAIMHNPEIRILCRQLLLDGCRVAQAEGLNFSEQTVDTIMTIYQGYPDEMG---- 237 (294)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHTSCTTCC----
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCChHHHHcCHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCCCC----
Confidence 77777777776662 233457889999999999975 4444444432 111000
Q ss_pred cCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Q psy764 209 YNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 209 ~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~ 267 (286)
+.+.++.. .+... -++. =...+.+.++++|+++|..+.++++++...+
T Consensus 238 ----sSM~qD~~-~gr~t---Eid~---i~G~vv~~a~~~gv~~P~~~~l~~ll~~~e~ 285 (294)
T 3g17_A 238 ----TSMYYDIV-HQQPL---EVEA---IQGFIYRRAREHNLDTPYLDTIYSFLRAYQQ 285 (294)
T ss_dssp ----CHHHHHHH-TTCCC---SGGG---THHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred ----CcHHHHHH-cCCCc---cHHH---hhhHHHHHHHHhCCCCChHHHHHHHHHHHHh
Confidence 01111100 11000 0111 1345889999999999999999998876543
|
| >2dc1_A L-aspartate dehydrogenase; NAD, oxidoreductase; HET: CIT NAD; 1.90A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-12 Score=109.08 Aligned_cols=151 Identities=15% Similarity=0.153 Sum_probs=111.7
Q ss_pred ccHHHHHHHHhCCCcE-EEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDV-IVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V-~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..++++|.+.|++| .+||+++ +.+. .++++++++ .++|+||+|+|++ ...++.. ..+.+|+
T Consensus 11 mG~~~~~~l~~~g~~lv~v~d~~~-~~~~-------~~~~~~~l~~~~~DvVv~~~~~~-~~~~~~~------~~l~~G~ 75 (236)
T 2dc1_A 11 IGKFLAEWLERNGFEIAAILDVRG-EHEK-------MVRGIDEFLQREMDVAVEAASQQ-AVKDYAE------KILKAGI 75 (236)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSC-CCTT-------EESSHHHHTTSCCSEEEECSCHH-HHHHHHH------HHHHTTC
T ss_pred HHHHHHHHHhcCCCEEEEEEecCc-chhh-------hcCCHHHHhcCCCCEEEECCCHH-HHHHHHH------HHHHCCC
Confidence 7899999999999997 7999985 3221 678899999 6999999999975 4444432 2356899
Q ss_pred EEEEcCCCCchHH---HHHHHHHHhcCCc-eEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCCcc
Q psy764 80 IVIDSSTVDPQVP---QTLSNLAREKQIT-FLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSG 155 (286)
Q Consensus 80 ivid~st~~p~~~---~~~~~~~~~~g~~-~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~~g 155 (286)
.|++.++..+... +++.+..+++|.. +++.|++|+...+..+.+ +++...+...++.++.++.+++|.|+.+
T Consensus 76 ~vv~~~~~~~~~~~~~~~l~~~a~~~g~~~~i~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~G~~~ 151 (236)
T 2dc1_A 76 DLIVLSTGAFADRDFLSRVREVCRKTGRRVYIASGAIGGLDAIFSASE----LIEEIVLTTRKNWRQFGRKGVIFEGSAS 151 (236)
T ss_dssp EEEESCGGGGGSHHHHHHHHHHHHHHCCCEEECCTTCSCHHHHHHTGG----GEEEEEEEEEEEGGGTTSCEEEEEEEHH
T ss_pred cEEEECcccCChHHHHHHHHHHHHhcCCeEEecCccccChHHHHHhhc----cccEEEEEEEcChHHcCcceEEEeccHH
Confidence 9999998775433 7888888888887 689999999988877764 5555555555566666787788888754
Q ss_pred hH-HHHHHHHHHHHHHH
Q psy764 156 NG-QVAKLCNNMLLGVT 171 (286)
Q Consensus 156 ~a-~~~Kl~~n~~~~~~ 171 (286)
.+ ..+|..+|......
T Consensus 152 ~~~~~~~~~~n~~~~~~ 168 (236)
T 2dc1_A 152 EAAQKFPKNLNVAATLS 168 (236)
T ss_dssp HHHHHSTTCCHHHHHHH
T ss_pred HHHHHCCchHHHHHHHH
Confidence 44 46777777765433
|
| >3c7a_A Octopine dehydrogenase; L) stereospecific opine dehydrogenas, oxidorecutase, oxidoreductase; HET: NAD; 2.10A {Pecten maximus} PDB: 3c7c_B* 3c7d_B* 3iqd_B* | Back alignment and structure |
|---|
Probab=99.16 E-value=1.8e-09 Score=97.02 Aligned_cols=79 Identities=11% Similarity=0.104 Sum_probs=63.8
Q ss_pred ccHHHHHHHHh-CCCcEEEEc---CCchHHHHHHH-cC---------C----------cccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQF-QGHDVIVYD---KNTDASQTLAK-EG---------A----------NMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~-~G~~V~~~d---r~~~~~~~l~~-~g---------~----------~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+++|..|++ +||+|++|+ |++++++.+.+ .| . ..+.+++++++++|+||+|||.
T Consensus 13 ~G~~~a~~La~~~G~~V~~~~~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~aD~Vilav~~ 92 (404)
T 3c7a_A 13 GAHTLSGLAASRDGVEVRVLTLFADEAERWTKALGADELTVIVNEKDGTQTEVKSRPKVITKDPEIAISGADVVILTVPA 92 (404)
T ss_dssp HHHHHHHHHTTSTTEEEEEECCSTTHHHHHHHHHTTSCEEEEEECSSSCEEEEEECCSEEESCHHHHHTTCSEEEECSCG
T ss_pred HHHHHHHHHHhCCCCEEEEEeCCCCcHHHHHHHHhhccceeeeecCCCccceeeccceEEeCCHHHHhCCCCEEEEeCch
Confidence 79999999988 599999999 88888877433 22 1 1556788999999999999996
Q ss_pred hhHHHHHhcCCccccccCCCCCEEEEc
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVIDS 84 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivid~ 84 (286)
...++++.. +.+.+.++++|++.
T Consensus 93 -~~~~~v~~~---l~~~l~~~~ivv~~ 115 (404)
T 3c7a_A 93 -FAHEGYFQA---MAPYVQDSALIVGL 115 (404)
T ss_dssp -GGHHHHHHH---HTTTCCTTCEEEET
T ss_pred -HHHHHHHHH---HHhhCCCCcEEEEc
Confidence 467888874 77778889999885
|
| >3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=99.11 E-value=4.4e-11 Score=102.27 Aligned_cols=108 Identities=13% Similarity=0.203 Sum_probs=90.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|++|...|++|++|||++++.+ .....+++++++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 133 IG~~vA~~l~~~G~~V~~~dr~~~~~~-----~~~~~~~l~ell~~aDiV~l~~P~t~~t~~li~~--~~l~~mk~gail 205 (290)
T 3gvx_A 133 IGRRVAHLAKAFGMRVIAYTRSSVDQN-----VDVISESPADLFRQSDFVLIAIPLTDKTRGMVNS--RLLANARKNLTI 205 (290)
T ss_dssp HHHHHHHHHHHHTCEEEEECSSCCCTT-----CSEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHTTCCTTCEE
T ss_pred hhHHHHHHHHhhCcEEEEEeccccccc-----cccccCChHHHhhccCeEEEEeeccccchhhhhH--HHHhhhhcCceE
Confidence 899999999999999999999976543 2456679999999999999999977777777643 466779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTK 116 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~ 116 (286)
||+|++.+...+.+.+.+.+.++......|+..++
T Consensus 206 IN~aRG~~vd~~aL~~aL~~g~i~ga~lDV~~~EP 240 (290)
T 3gvx_A 206 VNVARADVVSKPDMIGFLKERSDVWYLSDVWWNEP 240 (290)
T ss_dssp EECSCGGGBCHHHHHHHHHHCTTCEEEESCCTTTT
T ss_pred EEeehhcccCCcchhhhhhhccceEEeeccccCCc
Confidence 99999999999999999988877766666666554
|
| >3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A | Back alignment and structure |
|---|
Probab=99.05 E-value=1.6e-10 Score=101.35 Aligned_cols=111 Identities=16% Similarity=0.223 Sum_probs=92.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|.+|||++...+.+.+.|+...+++.+++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 175 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~--~~l~~mk~gail 252 (351)
T 3jtm_A 175 IGKLLLQRLKPFGCNLLYHDRLQMAPELEKETGAKFVEDLNEMLPKCDVIVINMPLTEKTRGMFNK--ELIGKLKKGVLI 252 (351)
T ss_dssp HHHHHHHHHGGGCCEEEEECSSCCCHHHHHHHCCEECSCHHHHGGGCSEEEECSCCCTTTTTCBSH--HHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEeCCCccCHHHHHhCCCeEcCCHHHHHhcCCEEEECCCCCHHHHHhhcH--HHHhcCCCCCEE
Confidence 899999999999999999999976666666778888889999999999999999977777777643 466779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 114 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~ 114 (286)
||++...+.....+.+.+.+..+....-.|+..
T Consensus 253 IN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~ 285 (351)
T 3jtm_A 253 VNNARGAIMERQAVVDAVESGHIGGYSGDVWDP 285 (351)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred EECcCchhhCHHHHHHHHHhCCccEEEeCCCCC
Confidence 999999999999999998877654333334443
|
| >3fr7_A Putative ketol-acid reductoisomerase (OS05G057370 protein); rossmann fold, NADPH, knotted protein, branched-chain amino biosynthesis; 1.55A {Oryza sativa japonica group} PDB: 3fr8_A* 1qmg_A* 1yve_I* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.6e-09 Score=97.43 Aligned_cols=184 Identities=16% Similarity=0.133 Sum_probs=114.6
Q ss_pred CccHHHHHHHHhC------CCcEEEEcCCc-hHHHHHHHcCCcc----cCCHHHHhhcCcEEEEecCChhHHHHHhcCCc
Q psy764 1 MISTLKLFFLQFQ------GHDVIVYDKNT-DASQTLAKEGANM----ALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 1 ~~G~~lA~~L~~~------G~~V~~~dr~~-~~~~~l~~~g~~~----~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
+||.++|++|.++ |++|++++|+. ...+...+.|+.. +.++.|++++||+||+++|+. ...+++.+
T Consensus 64 sMG~AmA~nLr~s~~~~g~G~~ViVg~r~~sks~e~A~e~G~~v~d~ta~s~aEAa~~ADVVILaVP~~-~~~eVl~e-- 140 (525)
T 3fr7_A 64 SQGPAQAQNLRDSLAEAKSDIVVKIGLRKGSKSFDEARAAGFTEESGTLGDIWETVSGSDLVLLLISDA-AQADNYEK-- 140 (525)
T ss_dssp THHHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCTTTTCEEEHHHHHHHCSEEEECSCHH-HHHHHHHH--
T ss_pred HHHHHHHHHHHhcccccCCCCEEEEEeCCchhhHHHHHHCCCEEecCCCCCHHHHHhcCCEEEECCChH-HHHHHHHH--
Confidence 4899999999999 99998876654 3455556778876 368999999999999999964 55667763
Q ss_pred cccccCCCCCEEEEcCCCCchHHHHHHH--HHHhcCCceE-eccCCCCHH----hh-h-----cCce-EEEecCC--Hhh
Q psy764 70 GILKHAKPGVIVIDSSTVDPQVPQTLSN--LAREKQITFL-DAPVSGGTK----AA-Q-----EATL-TFMVGGD--KSS 133 (286)
Q Consensus 70 ~l~~~l~~g~ivid~st~~p~~~~~~~~--~~~~~g~~~~-~~pv~g~~~----~a-~-----~g~l-~~~~gg~--~~~ 133 (286)
+.+.+++|++|+.+...... .+.+ .....++.++ -+|...+.. .. . .|.. .+-+..| .+.
T Consensus 141 -I~p~LK~GaILs~AaGf~I~---~le~~~i~~p~dv~VVrVmPNtPg~~VR~~y~~G~~~~g~Gv~~liAv~qd~tgea 216 (525)
T 3fr7_A 141 -IFSHMKPNSILGLSHGFLLG---HLQSAGLDFPKNISVIAVCPKGMGPSVRRLYVQGKEINGAGINSSFAVHQDVDGRA 216 (525)
T ss_dssp -HHHHSCTTCEEEESSSHHHH---HHHHTTCCCCTTSEEEEEEESSCHHHHHHHHHHHTTSTTCSCCEEEEEEECSSSCH
T ss_pred -HHHhcCCCCeEEEeCCCCHH---HHhhhcccCCCCCcEEEEecCCCchhHHHHHhcccccccCCccEEEEcCCCCCHHH
Confidence 88999999997766553222 1221 0112234443 568666654 11 1 3443 2333344 478
Q ss_pred HHHHHHHHHHhcCCeEecC-Ccc-------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 134 LEKAKPILKCMGRNIVHCG-DSG-------NGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 134 ~~~~~~ll~~~g~~v~~~g-~~g-------~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
.+.+..++..+|... .+. ..- .+...-++ +..-+ .+.++.|. +.+.|++++..+...-
T Consensus 217 ~e~alala~aiG~~~-vieTtf~eE~e~DLfgeqtvLs-G~~pA-lieA~~d~---lVe~G~~pe~Ay~~~~ 282 (525)
T 3fr7_A 217 TDVALGWSVALGSPF-TFATTLEQEYKSDIFGERGILL-GAVHG-IVEALFRR---YTEQGMDEEMAYKNTV 282 (525)
T ss_dssp HHHHHHHHHHTTCSE-EEECCHHHHHHHHHHHHHTTTT-HHHHH-HHHHHHHH---HHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCe-eeeeeeeeehhHhhhhhHhhhc-CcHHH-HHHHHHHH---HHHcCCCHHHHHHHHH
Confidence 899999999999852 211 100 00000011 11111 22445555 6789999988776644
|
| >3ego_A Probable 2-dehydropantoate 2-reductase; structural genomics, PANE, unknown function, cytoplasm, NADP, oxidoreductase; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.03 E-value=7.5e-10 Score=95.83 Aligned_cols=235 Identities=10% Similarity=0.030 Sum_probs=131.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCC----------HHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALS----------LSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s----------~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||+.+|..|. +|++|++|+|++++.+.+.+.|.....+ ..+....+|+||+|||. .++++++.. +
T Consensus 13 ~G~~~a~~L~-~g~~V~~~~r~~~~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~-~~~~~~l~~---l 87 (307)
T 3ego_A 13 VGLLCAYYLS-LYHDVTVVTRRQEQAAAIQSEGIRLYKGGEEFRADCSADTSINSDFDLLVVTVKQ-HQLQSVFSS---L 87 (307)
T ss_dssp HHHHHHHHHH-TTSEEEEECSCHHHHHHHHHHCEEEEETTEEEEECCEEESSCCSCCSEEEECCCG-GGHHHHHHH---T
T ss_pred HHHHHHHHHh-cCCceEEEECCHHHHHHHHhCCceEecCCCeecccccccccccCCCCEEEEEeCH-HHHHHHHHH---h
Confidence 7999999999 9999999999999888888777654311 12456789999999994 688888864 4
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCC-----CHH---hhhcCceEEEec---CCHhhHHHHHHH
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG-----GTK---AAQEATLTFMVG---GDKSSLEKAKPI 140 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g-----~~~---~a~~g~l~~~~g---g~~~~~~~~~~l 140 (286)
.+ +.+++ ||.+....... +.+.+.+.. -.++.+-+.- +|. ....|. +.+| ++.+.++++..+
T Consensus 88 ~~-~~~~~-ivs~~nGi~~~-e~l~~~~~~--~~vl~g~~~~~a~~~~pg~v~~~~~g~--~~iG~~~~~~~~~~~l~~~ 160 (307)
T 3ego_A 88 ER-IGKTN-ILFLQNGMGHI-HDLKDWHVG--HSIYVGIVEHGAVRKSDTAVDHTGLGA--IKWSAFDDAEPDRLNILFQ 160 (307)
T ss_dssp TS-SCCCE-EEECCSSSHHH-HHHHTCCCS--CEEEEEEECCEEEECSSSEEEEEECCC--EEEEECTTCCGGGGTTTTS
T ss_pred hc-CCCCe-EEEecCCccHH-HHHHHhCCC--CcEEEEEEeeceEECCCCEEEEeeeee--EEEEeCCCCcHHHHHHHHH
Confidence 43 34555 77665554432 122222211 1222221111 111 112233 2233 223333444444
Q ss_pred HHHhcCCeEecCCcchHHHHHHHHHHHHH---------------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHcc
Q psy764 141 LKCMGRNIVHCGDSGNGQVAKLCNNMLLG---------------------VTMMGVAEAMNLGVKLGMNAKLLSDVINTS 199 (286)
Q Consensus 141 l~~~g~~v~~~g~~g~a~~~Kl~~n~~~~---------------------~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~ 199 (286)
|+.-+.++.+..++-...--|++.|..+. .+...+.|+..+++.. +++.+.+-+...
T Consensus 161 l~~ag~~~~~~~di~~~~W~Kl~~N~~~N~ltal~~~~~g~l~~~~~~~~l~~~l~~E~~~va~~~--~~~~~~~~~~~~ 238 (307)
T 3ego_A 161 HNHSDFPIYYETDWYRLLTGKLIVNACINPLTALLQVKNGELLTTPAYLAFMKLVFQEACRILKLE--NEEKAWERVQAV 238 (307)
T ss_dssp SCCTTSCEEECSCHHHHHHHHHHHHHHHHHHHHHHTCCTTHHHHSHHHHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHH
T ss_pred hhhCCCCcEechhHHHHHHHHHHHhhhhhHHHHHhcCCcchhhcChhHHHHHHHHHHHHHHHHhcc--ChHHHHHHHHHH
Confidence 54445566666677777778877776322 2345677777777654 244443332211
Q ss_pred ---CCCcccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 200 ---SGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 200 ---~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
+... .+.++++.. .+.. --++. =...+.+.++++|+++|..+.++++++..
T Consensus 239 ~~~~~~~--------~sSM~qD~~-~gr~---tEid~---i~G~vv~~a~~~gv~tP~~~~l~~li~~~ 292 (307)
T 3ego_A 239 CGQTKEN--------RSSMLVDVI-GGRQ---TEADA---IIGYLLKEASLQGLDAVHLEFLYGSIKAL 292 (307)
T ss_dssp HHHTTTC--------CCHHHHHHH-HTCC---CSHHH---HHHHHHHHHHHTTCCCHHHHHHHHHHHHT
T ss_pred HHhcCCC--------CchHHHHHH-cCCc---ccHHH---hhhHHHHHHHHcCCCCcHHHHHHHHHHHH
Confidence 0000 001111000 0100 00111 13458999999999999999999988754
|
| >3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-10 Score=100.28 Aligned_cols=110 Identities=14% Similarity=0.149 Sum_probs=90.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|++|...|++|.+|||++. .+...+.|+...+++++++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 171 IG~~vA~~l~~~G~~V~~~d~~~~-~~~~~~~g~~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~--~~l~~mk~gail 247 (352)
T 3gg9_A 171 IGQLVAGYGRAFGMNVLVWGRENS-KERARADGFAVAESKDALFEQSDVLSVHLRLNDETRSIITV--ADLTRMKPTALF 247 (352)
T ss_dssp HHHHHHHHHHHTTCEEEEECSHHH-HHHHHHTTCEECSSHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTTSCTTCEE
T ss_pred HHHHHHHHHHhCCCEEEEECCCCC-HHHHHhcCceEeCCHHHHHhhCCEEEEeccCcHHHHHhhCH--HHHhhCCCCcEE
Confidence 899999999999999999999864 35556678888889999999999999999987777777643 466778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 114 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~ 114 (286)
||+|+..+.....+.+.+.+..+....-.|+..
T Consensus 248 IN~aRg~~vd~~aL~~aL~~g~i~gA~lDV~~~ 280 (352)
T 3gg9_A 248 VNTSRAELVEENGMVTALNRGRPGMAAIDVFET 280 (352)
T ss_dssp EECSCGGGBCTTHHHHHHHHTSSSEEEECCCSS
T ss_pred EECCCchhhcHHHHHHHHHhCCccEEEecccCC
Confidence 999999999889999999887765443334443
|
| >2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-10 Score=99.43 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=84.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.|...|++|++|||++++.+.+.+.|+... ++.+++++||+|++++|.....+.++.. .+.+.+++|.++
T Consensus 166 iG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~e~l~~aDvVi~~vp~~~~t~~~i~~--~~~~~mk~gail 242 (330)
T 2gcg_A 166 IGQAIARRLKPFGVQRFLYTGRQPRPEEAAEFQAEFV-STPELAAQSDFIVVACSLTPATEGLCNK--DFFQKMKETAVF 242 (330)
T ss_dssp HHHHHHHHHGGGTCCEEEEESSSCCHHHHHTTTCEEC-CHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHHHSCTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcchhHHHhcCceeC-CHHHHHhhCCEEEEeCCCChHHHHhhCH--HHHhcCCCCcEE
Confidence 7999999999999999999999877666666677666 8999999999999999987676777641 356678899999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
|++|++.+.....+.+.+.+.++.
T Consensus 243 In~srg~~v~~~aL~~aL~~~~i~ 266 (330)
T 2gcg_A 243 INISRGDVVNQDDLYQALASGKIA 266 (330)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSSS
T ss_pred EECCCCcccCHHHHHHHHHcCCcc
Confidence 999999998888898888776543
|
| >2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B | Back alignment and structure |
|---|
Probab=99.02 E-value=3.2e-10 Score=99.69 Aligned_cols=111 Identities=16% Similarity=0.113 Sum_probs=88.7
Q ss_pred ccHHHHHHHH-hCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQ-FQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~-~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.|. ..|++|++|||++++.+...+.|+....++.+++++||+|++|+|...+.+.++.. .+++.++++.+
T Consensus 174 IG~~vA~~l~~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvVil~vp~~~~t~~li~~--~~l~~mk~gai 251 (348)
T 2w2k_A 174 IQKEIARKAVHGLGMKLVYYDVAPADAETEKALGAERVDSLEELARRSDCVSVSVPYMKLTHHLIDE--AFFAAMKPGSR 251 (348)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCSGGGTTCBCH--HHHHHSCTTEE
T ss_pred HHHHHHHHHHHhcCCEEEEECCCCcchhhHhhcCcEEeCCHHHHhccCCEEEEeCCCChHHHHHhhH--HHHhcCCCCCE
Confidence 8999999999 99999999999987766665668877778999999999999999987777777642 35567889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 114 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~ 114 (286)
+||+|++.+.....+.+.+.+..+......++..
T Consensus 252 lin~srg~~vd~~aL~~aL~~~~i~gaglDv~~~ 285 (348)
T 2w2k_A 252 IVNTARGPVISQDALIAALKSGKLLSAGLDVHEF 285 (348)
T ss_dssp EEECSCGGGBCHHHHHHHHHTTSEEEEEESSCTT
T ss_pred EEECCCCchhCHHHHHHHHHhCCceEEEeccCCC
Confidence 9999999998888898888765433222334443
|
| >2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* | Back alignment and structure |
|---|
Probab=98.99 E-value=5.5e-10 Score=97.72 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=84.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|...|++|++|||++++ +...+.|+.. .++.+++++||+|++|+|...+++.++.. .+.+.++++.++
T Consensus 161 iG~~iA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~~~l~~aDvVil~vp~~~~t~~~i~~--~~~~~mk~~ail 236 (334)
T 2dbq_A 161 IGQAIAKRAKGFNMRILYYSRTRKE-EVERELNAEF-KPLEDLLRESDFVVLAVPLTRETYHLINE--ERLKLMKKTAIL 236 (334)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCH-HHHHHHCCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCH--HHHHHSCTTCEE
T ss_pred HHHHHHHHHHhCCCEEEEECCCcch-hhHhhcCccc-CCHHHHHhhCCEEEECCCCChHHHHhhCH--HHHhcCCCCcEE
Confidence 7999999999999999999999887 5555567765 48999999999999999987767777642 356678899999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCce
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITF 106 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~ 106 (286)
||+|+..+.....+.+.+.+..+..
T Consensus 237 In~srg~~v~~~aL~~aL~~~~i~g 261 (334)
T 2dbq_A 237 INIARGKVVDTNALVKALKEGWIAG 261 (334)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSSSE
T ss_pred EECCCCcccCHHHHHHHHHhCCeeE
Confidence 9999999988888888888765544
|
| >1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=5.1e-10 Score=98.19 Aligned_cols=101 Identities=12% Similarity=0.137 Sum_probs=84.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|++|...|++|++|||++++. .....|+....++.+++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 179 IG~~vA~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~mk~gail 255 (347)
T 1mx3_A 179 VGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND--FTVKQMRQGAFL 255 (347)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSH--HHHTTSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh-hHhhcCCeecCCHHHHHhcCCEEEEcCCCCHHHHHHhHH--HHHhcCCCCCEE
Confidence 89999999999999999999987642 223457777778999999999999999987777777642 356778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
||++++.+...+.+.+.+.+.++.
T Consensus 256 IN~arg~~vd~~aL~~aL~~g~i~ 279 (347)
T 1mx3_A 256 VNTARGGLVDEKALAQALKEGRIR 279 (347)
T ss_dssp EECSCTTSBCHHHHHHHHHHTSEE
T ss_pred EECCCChHHhHHHHHHHHHhCCCc
Confidence 999999999999999998887654
|
| >4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.3e-09 Score=95.12 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=88.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|++|...|++|.+|||++.+.+...+.|+... ++.+++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 156 IG~~vA~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~-~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~mk~gail 232 (330)
T 4e5n_A 156 IGLAMADRLQGWGATLQYHEAKALDTQTEQRLGLRQV-ACSELFASSDFILLALPLNADTLHLVNA--ELLALVRPGALL 232 (330)
T ss_dssp HHHHHHHHTTTSCCEEEEECSSCCCHHHHHHHTEEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTTSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCcHhHHHhcCceeC-CHHHHHhhCCEEEEcCCCCHHHHHHhCH--HHHhhCCCCcEE
Confidence 8999999999999999999999855555555676544 8999999999999999987777777642 467778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
||+++..+.....+.+.+.+..+....--|+.
T Consensus 233 IN~arg~~vd~~aL~~aL~~g~i~gA~lDV~~ 264 (330)
T 4e5n_A 233 VNPCRGSVVDEAAVLAALERGQLGGYAADVFE 264 (330)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCG
T ss_pred EECCCCchhCHHHHHHHHHhCCccEEEecccc
Confidence 99999999999999999988766533223443
|
| >4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.97 E-value=7e-10 Score=96.85 Aligned_cols=107 Identities=16% Similarity=0.075 Sum_probs=66.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|++|...|++|.+|||++++ ..+.....++.|++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 182 IG~~vA~~l~~~G~~V~~~dr~~~~-----~~~~~~~~sl~ell~~aDvVil~vP~t~~t~~li~~--~~l~~mk~gail 254 (340)
T 4dgs_A 182 IGRALASRAEAFGMSVRYWNRSTLS-----GVDWIAHQSPVDLARDSDVLAVCVAASAATQNIVDA--SLLQALGPEGIV 254 (340)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCT-----TSCCEECSSHHHHHHTCSEEEECC----------CH--HHHHHTTTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCccc-----ccCceecCCHHHHHhcCCEEEEeCCCCHHHHHHhhH--HHHhcCCCCCEE
Confidence 8999999999999999999999865 235566789999999999999999987788888743 466778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGT 115 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~ 115 (286)
||+++..+.....+.+.+.+..+....-.|+..+
T Consensus 255 IN~aRG~vvde~aL~~aL~~g~i~gA~LDVf~~E 288 (340)
T 4dgs_A 255 VNVARGNVVDEDALIEALKSGTIAGAGLDVFVNE 288 (340)
T ss_dssp EECSCC--------------CCSSEEEESCCSSS
T ss_pred EECCCCcccCHHHHHHHHHcCCceEEEeCCcCCC
Confidence 9999999999899988887765544333355433
|
| >1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=8.9e-10 Score=95.79 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=83.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcC-CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK-NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|++|...|++|++||| ++++ ....+.|+...+++.+++++||+|++|+|...+.+.++.. ..++.+++|.+
T Consensus 157 IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~~g~~~~~~l~ell~~aDvVil~~p~~~~t~~~i~~--~~l~~mk~gai 233 (320)
T 1gdh_A 157 IGQALAKRAQGFDMDIDYFDTHRASS-SDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK--ATIKSLPQGAI 233 (320)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCH-HHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHTTSCTTEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcCh-hhhhhcCcEEcCCHHHHHhhCCEEEEeccCchHHHhhcCH--HHHhhCCCCcE
Confidence 899999999999999999999 8776 3445568877768999999999999999987667776642 35677899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~ 104 (286)
+||+++..+.....+.+.+.+..+
T Consensus 234 lIn~arg~~vd~~aL~~aL~~g~i 257 (320)
T 1gdh_A 234 VVNTARGDLVDNELVVAALEAGRL 257 (320)
T ss_dssp EEECSCGGGBCHHHHHHHHHHTSE
T ss_pred EEECCCCcccCHHHHHHHHHhCCC
Confidence 999999888888888888877543
|
| >4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.5e-10 Score=96.85 Aligned_cols=111 Identities=16% Similarity=0.119 Sum_probs=88.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|++|...|++|.+|||++...+.. .|....+++++++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 184 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~g~~~~~~l~ell~~sDvV~l~~Plt~~T~~li~~--~~l~~mk~gail 259 (345)
T 4g2n_A 184 IGRAIATRARGFGLAIHYHNRTRLSHALE--EGAIYHDTLDSLLGASDIFLIAAPGRPELKGFLDH--DRIAKIPEGAVV 259 (345)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCHHHH--TTCEECSSHHHHHHTCSEEEECSCCCGGGTTCBCH--HHHHHSCTTEEE
T ss_pred hHHHHHHHHHHCCCEEEEECCCCcchhhh--cCCeEeCCHHHHHhhCCEEEEecCCCHHHHHHhCH--HHHhhCCCCcEE
Confidence 89999999999999999999987544322 27777789999999999999999987777777643 456778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTK 116 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~ 116 (286)
||++.........+.+.+.+..+....-.|+..++
T Consensus 260 IN~aRG~~vde~aL~~aL~~g~i~gA~LDVf~~EP 294 (345)
T 4g2n_A 260 INISRGDLINDDALIEALRSKHLFAAGLDVFANEP 294 (345)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTTT
T ss_pred EECCCCchhCHHHHHHHHHhCCceEEEecCCCCCC
Confidence 99999999999999998877654433333554443
|
| >3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=6.4e-10 Score=97.04 Aligned_cols=97 Identities=10% Similarity=0.096 Sum_probs=82.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.|...|++|++|||++++. .|.....++.+++++||+|++++|...+.+.++.. ..++.++++.++
T Consensus 175 iG~~vA~~l~~~G~~V~~~dr~~~~~-----~g~~~~~~l~ell~~aDvVil~vP~~~~t~~li~~--~~l~~mk~gail 247 (333)
T 3ba1_A 175 IGLAVAERAEAFDCPISYFSRSKKPN-----TNYTYYGSVVELASNSDILVVACPLTPETTHIINR--EVIDALGPKGVL 247 (333)
T ss_dssp HHHHHHHHHHTTTCCEEEECSSCCTT-----CCSEEESCHHHHHHTCSEEEECSCCCGGGTTCBCH--HHHHHHCTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCchhc-----cCceecCCHHHHHhcCCEEEEecCCChHHHHHhhH--HHHhcCCCCCEE
Confidence 89999999999999999999998753 26666778999999999999999987677777742 355678899999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
||+|++.+.....+.+.+.+..+.
T Consensus 248 In~srG~~vd~~aL~~aL~~g~i~ 271 (333)
T 3ba1_A 248 INIGRGPHVDEPELVSALVEGRLG 271 (333)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSSC
T ss_pred EECCCCchhCHHHHHHHHHcCCCe
Confidence 999999999889999988876554
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.1e-09 Score=94.56 Aligned_cols=100 Identities=17% Similarity=0.209 Sum_probs=83.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|++|||++++ +...+.|+... ++++++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 153 IG~~~A~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~ell~~aDvV~l~~p~~~~t~~li~~--~~l~~mk~ga~l 228 (307)
T 1wwk_A 153 IGYQVAKIANALGMNILLYDPYPNE-ERAKEVNGKFV-DLETLLKESDVVTIHVPLVESTYHLINE--ERLKLMKKTAIL 228 (307)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCH-HHHHHTTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHHHSCTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCh-hhHhhcCcccc-CHHHHHhhCCEEEEecCCChHHhhhcCH--HHHhcCCCCeEE
Confidence 8999999999999999999999877 45556677654 7999999999999999987777776642 356678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
||+++..+.....+.+.+.+..+.
T Consensus 229 in~arg~~vd~~aL~~aL~~g~i~ 252 (307)
T 1wwk_A 229 INTSRGPVVDTNALVKALKEGWIA 252 (307)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSSS
T ss_pred EECCCCcccCHHHHHHHHHhCCCc
Confidence 999999888888888888776543
|
| >1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-09 Score=99.59 Aligned_cols=99 Identities=24% Similarity=0.336 Sum_probs=82.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|++|...|++|++|||++.. +...+.|+... ++.+++++||+|++|+|...+.+.++.. .+++.+++|.++
T Consensus 153 IG~~vA~~l~~~G~~V~~~d~~~~~-~~a~~~g~~~~-~l~e~~~~aDvV~l~~P~~~~t~~~i~~--~~~~~~k~g~il 228 (529)
T 1ygy_A 153 IGQLVAQRIAAFGAYVVAYDPYVSP-ARAAQLGIELL-SLDDLLARADFISVHLPKTPETAGLIDK--EALAKTKPGVII 228 (529)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCH-HHHHHHTCEEC-CHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTTSCTTEEE
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCh-hHHHhcCcEEc-CHHHHHhcCCEEEECCCCchHHHHHhCH--HHHhCCCCCCEE
Confidence 8999999999999999999998753 34556687765 8999999999999999987677887753 356678899999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
||+++..+.....+.+.+.+..+
T Consensus 229 in~arg~iv~~~aL~~al~~g~i 251 (529)
T 1ygy_A 229 VNAARGGLVDEAALADAITGGHV 251 (529)
T ss_dssp EECSCTTSBCHHHHHHHHHTSSE
T ss_pred EECCCCchhhHHHHHHHHHcCCc
Confidence 99999999988888888876533
|
| >3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} | Back alignment and structure |
|---|
Probab=98.94 E-value=4.1e-10 Score=97.71 Aligned_cols=110 Identities=16% Similarity=0.221 Sum_probs=87.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|++|...|++|++|||+++..+.+ .+.....++++++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 151 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~--~~~~~~~~l~ell~~aDvV~l~lPlt~~T~~li~~--~~l~~mk~gail 226 (324)
T 3hg7_A 151 IGQHIAHTGKHFGMKVLGVSRSGRERAGF--DQVYQLPALNKMLAQADVIVSVLPATRETHHLFTA--SRFEHCKPGAIL 226 (324)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCCTTC--SEEECGGGHHHHHHTCSEEEECCCCCSSSTTSBCT--TTTTCSCTTCEE
T ss_pred HHHHHHHHHHhCCCEEEEEcCChHHhhhh--hcccccCCHHHHHhhCCEEEEeCCCCHHHHHHhHH--HHHhcCCCCcEE
Confidence 89999999999999999999997543222 12233568999999999999999987777887754 466778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGT 115 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~ 115 (286)
||+|+..+...+.+.+.+.+..+....-.|+..+
T Consensus 227 IN~aRG~~vde~aL~~aL~~g~i~ga~lDV~~~E 260 (324)
T 3hg7_A 227 FNVGRGNAINEGDLLTALRTGKLGMAVLDVFEQE 260 (324)
T ss_dssp EECSCGGGBCHHHHHHHHHTTSSSEEEESCCSSS
T ss_pred EECCCchhhCHHHHHHHHHcCCceEEEeccCCCC
Confidence 9999999999999999998776644333455543
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.94 E-value=1.3e-09 Score=95.05 Aligned_cols=99 Identities=19% Similarity=0.156 Sum_probs=83.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|++|||++++ +...+.|+.. .++++++++||+|++|+|...+.+.++.. ..++.+++|.++
T Consensus 176 IG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~-~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~mk~gail 251 (335)
T 2g76_A 176 IGREVATRMQSFGMKTIGYDPIISP-EVSASFGVQQ-LPLEEIWPLCDFITVHTPLLPSTTGLLND--NTFAQCKKGVRV 251 (335)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSSCH-HHHHHTTCEE-CCHHHHGGGCSEEEECCCCCTTTTTSBCH--HHHTTSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCcee-CCHHHHHhcCCEEEEecCCCHHHHHhhCH--HHHhhCCCCcEE
Confidence 8999999999999999999998776 3455667764 48999999999999999988777777642 366778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
||+|+..+.....+.+.+.+..+
T Consensus 252 IN~arg~vvd~~aL~~aL~~g~i 274 (335)
T 2g76_A 252 VNCARGGIVDEGALLRALQSGQC 274 (335)
T ss_dssp EECSCTTSBCHHHHHHHHHHTSE
T ss_pred EECCCccccCHHHHHHHHHhCCc
Confidence 99999998888888888877644
|
| >2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A | Back alignment and structure |
|---|
Probab=98.93 E-value=8.7e-10 Score=97.98 Aligned_cols=101 Identities=9% Similarity=0.026 Sum_probs=85.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|++|||++.+.+...+.|+....++++++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 202 IG~~vA~~l~a~G~~V~~~d~~~~~~~~~~~~G~~~~~~l~ell~~aDvV~l~~Plt~~t~~li~~--~~l~~mk~gail 279 (393)
T 2nac_A 202 IGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND--ETLKLFKRGAYI 279 (393)
T ss_dssp HHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH--HHHTTSCTTEEE
T ss_pred HHHHHHHHHHhCCCEEEEEcCCccchhhHhhcCceecCCHHHHHhcCCEEEEecCCchHHHHHhhH--HHHhhCCCCCEE
Confidence 899999999999999999999976655555668877778999999999999999987677777642 356778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
||+++..+...+.+.+.+.+..+
T Consensus 280 IN~aRG~~vde~aL~~aL~~g~i 302 (393)
T 2nac_A 280 VNTARGKLCDRDAVARALESGRL 302 (393)
T ss_dssp EECSCGGGBCHHHHHHHHHTTSE
T ss_pred EECCCchHhhHHHHHHHHHcCCe
Confidence 99999988888889888876543
|
| >3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.7e-10 Score=98.98 Aligned_cols=110 Identities=13% Similarity=0.140 Sum_probs=87.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|++|...|++|++|||++++.+.+.. .....++.+++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 148 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~--~~~~~~l~ell~~aDvV~l~lPlt~~t~~li~~--~~l~~mk~gail 223 (324)
T 3evt_A 148 IGQSLAAKASALGMHVIGVNTTGHPADHFHE--TVAFTATADALATANFIVNALPLTPTTHHLFST--ELFQQTKQQPML 223 (324)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCCCTTCSE--EEEGGGCHHHHHHCSEEEECCCCCGGGTTCBSH--HHHHTCCSCCEE
T ss_pred HHHHHHHHHHhCCCEEEEECCCcchhHhHhh--ccccCCHHHHHhhCCEEEEcCCCchHHHHhcCH--HHHhcCCCCCEE
Confidence 8999999999999999999999765433211 123467899999999999999987777777743 466778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGT 115 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~ 115 (286)
||+|++.+...+.+.+.+.+..+......|+..+
T Consensus 224 IN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~E 257 (324)
T 3evt_A 224 INIGRGPAVDTTALMTALDHHQLSMAALDVTEPE 257 (324)
T ss_dssp EECSCGGGBCHHHHHHHHHTTSCSEEEESSCSSS
T ss_pred EEcCCChhhhHHHHHHHHHhCCceEEEeCCCCCC
Confidence 9999999999999999998877665444566544
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.92 E-value=9e-10 Score=95.44 Aligned_cols=99 Identities=20% Similarity=0.203 Sum_probs=82.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|++|||++++. ...+.|+.. .++.+++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 153 IG~~~A~~l~~~G~~V~~~d~~~~~~-~~~~~g~~~-~~l~ell~~aDvVvl~~P~~~~t~~li~~--~~l~~mk~ga~l 228 (313)
T 2ekl_A 153 IGTKVGIIANAMGMKVLAYDILDIRE-KAEKINAKA-VSLEELLKNSDVISLHVTVSKDAKPIIDY--PQFELMKDNVII 228 (313)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHH-HHHHTTCEE-CCHHHHHHHCSEEEECCCCCTTSCCSBCH--HHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh-HHHhcCcee-cCHHHHHhhCCEEEEeccCChHHHHhhCH--HHHhcCCCCCEE
Confidence 89999999999999999999998764 355667765 48999999999999999987766666632 355678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
||+++..+.....+.+.+.+.++
T Consensus 229 In~arg~~vd~~aL~~aL~~g~i 251 (313)
T 2ekl_A 229 VNTSRAVAVNGKALLDYIKKGKV 251 (313)
T ss_dssp EESSCGGGBCHHHHHHHHHTTCE
T ss_pred EECCCCcccCHHHHHHHHHcCCC
Confidence 99999998888889888877654
|
| >3ado_A Lambda-crystallin; L-gulonate 3-dehydrogenase, structural genomics, riken struc genomics/proteomics initiative, RSGI, acetylation; 1.70A {Oryctolagus cuniculus} PDB: 3adp_A* 3f3s_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-08 Score=88.04 Aligned_cols=186 Identities=16% Similarity=0.126 Sum_probs=120.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH-----------HcC--------------CcccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA-----------KEG--------------ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~-----------~~g--------------~~~~~s~~e~~~~adivi~~v~ 56 (286)
||+.+|..++.+|++|++||++++..+... +.| +..++++.|++++||+||=|+|
T Consensus 17 MG~giA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~l~~i~~~~~l~~a~~~ad~ViEav~ 96 (319)
T 3ado_A 17 VGRSWAMLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQSGSLKGSLSAEEQLSLISSCTNLAEAVEGVVHIQECVP 96 (319)
T ss_dssp HHHHHHHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHTTCCCSSSCHHHHHHTEEEECCHHHHTTTEEEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHHHHcCCCCCccCHHHHHhhcccccchHhHhccCcEEeeccc
Confidence 899999999999999999999987644321 112 3456788899999999999999
Q ss_pred ChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHhh
Q psy764 57 ASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKSS 133 (286)
Q Consensus 57 ~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~ 133 (286)
-.-+++.-++. .+-+..+++.++-.-|+..+. .++++.+.. .-+++-.-.+..+.. -.++=++.| +++.
T Consensus 97 E~l~iK~~lf~--~l~~~~~~~aIlaSNTSsl~i--s~ia~~~~~-p~r~ig~HffNP~~~---m~LVEiv~g~~Ts~~~ 168 (319)
T 3ado_A 97 ENLDLKRKIFA--QLDSIVDDRVVLSSSSSCLLP--SKLFTGLAH-VKQCIVAHPVNPPYY---IPLVELVPHPETSPAT 168 (319)
T ss_dssp SCHHHHHHHHH--HHHTTCCSSSEEEECCSSCCH--HHHHTTCTT-GGGEEEEEECSSTTT---CCEEEEEECTTCCHHH
T ss_pred cHHHHHHHHHH--HHHHHhhhcceeehhhhhccc--hhhhhhccC-CCcEEEecCCCCccc---cchHHhcCCCCCcHHH
Confidence 87777654432 255556677766543333232 233333322 123332211222211 123434444 5789
Q ss_pred HHHHHHHHHHhcCCeEec-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCc
Q psy764 134 LEKAKPILKCMGRNIVHC-GDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRC 203 (286)
Q Consensus 134 ~~~~~~ll~~~g~~v~~~-g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s 203 (286)
++++..+++.+|++++.+ .+. -|.. .|-+. ...+.|++.+.+.-+.+++++-.++..+.|..
T Consensus 169 ~~~~~~~~~~~gk~pv~v~kd~-pGFi----~NRl~---~~~~~EA~~lv~eGvas~edID~~~~~g~g~~ 231 (319)
T 3ado_A 169 VDRTHALMRKIGQSPVRVLKEI-DGFV----LNRLQ---YAIISEAWRLVEEGIVSPSDLDLVMSDGLGMR 231 (319)
T ss_dssp HHHHHHHHHHTTCEEEECSSCC-TTTT----HHHHH---HHHHHHHHHHHHTTSSCHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHhCCccCCcCCCC-CCEe----HHHHH---HHHHHHHHHHHHhCCCCHHHHHHHHHhCCCCC
Confidence 999999999999887655 441 2222 24333 34679999999999999999999988765433
|
| >2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-09 Score=96.48 Aligned_cols=102 Identities=16% Similarity=0.154 Sum_probs=86.5
Q ss_pred ccHHHHHHHHhCCCc-EEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHD-VIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|++|...|++ |++|||++.+.+...+.|+....++.+++++||+|++++|...+.+.++.. ..++.+++|.+
T Consensus 175 IG~~vA~~l~~~G~~~V~~~d~~~~~~~~~~~~g~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~mk~ga~ 252 (364)
T 2j6i_A 175 IGYRVLERLVPFNPKELLYYDYQALPKDAEEKVGARRVENIEELVAQADIVTVNAPLHAGTKGLINK--ELLSKFKKGAW 252 (364)
T ss_dssp HHHHHHHHHGGGCCSEEEEECSSCCCHHHHHHTTEEECSSHHHHHHTCSEEEECCCCSTTTTTCBCH--HHHTTSCTTEE
T ss_pred HHHHHHHHHHhCCCcEEEEECCCccchhHHHhcCcEecCCHHHHHhcCCEEEECCCCChHHHHHhCH--HHHhhCCCCCE
Confidence 899999999999997 999999987666666678777778999999999999999987777777642 35677899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCc
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~ 105 (286)
+||+++..+...+.+.+.+.+..+.
T Consensus 253 lIn~arG~~vd~~aL~~aL~~g~i~ 277 (364)
T 2j6i_A 253 LVNTARGAICVAEDVAAALESGQLR 277 (364)
T ss_dssp EEECSCGGGBCHHHHHHHHHHTSEE
T ss_pred EEECCCCchhCHHHHHHHHHcCCCc
Confidence 9999999998889999988876543
|
| >2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.90 E-value=1.2e-09 Score=95.51 Aligned_cols=100 Identities=10% Similarity=0.114 Sum_probs=81.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.|...|++|++|||++++ +...+.|+... ++.+++++||+|++|+|...+++.++.. .+.+.+++| ++
T Consensus 157 iG~~vA~~l~~~G~~V~~~d~~~~~-~~~~~~g~~~~-~l~e~l~~aDiVil~vp~~~~t~~~i~~--~~~~~mk~g-il 231 (333)
T 2d0i_A 157 IGKAIARRLIPFGVKLYYWSRHRKV-NVEKELKARYM-DIDELLEKSDIVILALPLTRDTYHIINE--ERVKKLEGK-YL 231 (333)
T ss_dssp HHHHHHHHHGGGTCEEEEECSSCCH-HHHHHHTEEEC-CHHHHHHHCSEEEECCCCCTTTTTSBCH--HHHHHTBTC-EE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcch-hhhhhcCceec-CHHHHHhhCCEEEEcCCCChHHHHHhCH--HHHhhCCCC-EE
Confidence 7999999999999999999999876 44445576654 8999999999999999987677777652 245678899 99
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCce
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITF 106 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~ 106 (286)
||+|+..+.....+.+.+.+..+..
T Consensus 232 in~srg~~vd~~aL~~aL~~~~i~g 256 (333)
T 2d0i_A 232 VNIGRGALVDEKAVTEAIKQGKLKG 256 (333)
T ss_dssp EECSCGGGBCHHHHHHHHHTTCBCE
T ss_pred EECCCCcccCHHHHHHHHHcCCceE
Confidence 9999999888888888887654443
|
| >1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.3e-09 Score=92.43 Aligned_cols=97 Identities=12% Similarity=0.070 Sum_probs=81.6
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||..+|++|...|++|.+|||+++ +. +.....++.+++++||+|++++|...+.+.++.. ..++.+++|.+
T Consensus 134 ~IG~~~A~~l~~~G~~V~~~dr~~~--~~----~~~~~~~l~ell~~aDvV~l~~P~~~~t~~~i~~--~~l~~mk~gai 205 (303)
T 1qp8_A 134 EIGTRVGKILAALGAQVRGFSRTPK--EG----PWRFTNSLEEALREARAAVCALPLNKHTRGLVKY--QHLALMAEDAV 205 (303)
T ss_dssp THHHHHHHHHHHTTCEEEEECSSCC--CS----SSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCH--HHHTTSCTTCE
T ss_pred HHHHHHHHHHHHCCCEEEEECCCcc--cc----CcccCCCHHHHHhhCCEEEEeCcCchHHHHHhCH--HHHhhCCCCCE
Confidence 3899999999999999999999876 21 4555678999999999999999988777877752 36777899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCc
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~ 105 (286)
+||+|+..+.....+.+.+.+..+.
T Consensus 206 lin~srg~~vd~~aL~~aL~~g~i~ 230 (303)
T 1qp8_A 206 FVNVGRAEVLDRDGVLRILKERPQF 230 (303)
T ss_dssp EEECSCGGGBCHHHHHHHHHHCTTC
T ss_pred EEECCCCcccCHHHHHHHHHhCCce
Confidence 9999999988888898888776544
|
| >1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8 | Back alignment and structure |
|---|
Probab=98.86 E-value=2.7e-09 Score=81.18 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=75.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..++++|.+.||+|+.+|++.+.+ .|..++.|++|+.+..|++++|+| ++.+.+++.+ +.+ ...+.+|
T Consensus 29 ~G~~~~~~L~~~G~~V~~vnp~~~~i-----~G~~~~~s~~el~~~vDlvii~vp-~~~v~~v~~~---~~~-~g~~~i~ 98 (138)
T 1y81_A 29 YGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAKE---AVE-AGFKKLW 98 (138)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHHH---HHH-TTCCEEE
T ss_pred HHHHHHHHHHHCCCEEEEeCCCCCeE-----CCeeecCCHHHhCCCCCEEEEEeC-HHHHHHHHHH---HHH-cCCCEEE
Confidence 78899999999999977777765433 588999999999999999999999 5788888764 444 3456788
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+++++. .+++.+.++++|+++++
T Consensus 99 ~~~~~~----~~~l~~~a~~~Gi~~ig 121 (138)
T 1y81_A 99 FQPGAE----SEEIRRFLEKAGVEYSF 121 (138)
T ss_dssp ECTTSC----CHHHHHHHHHHTCEEEC
T ss_pred EcCccH----HHHHHHHHHHCCCEEEc
Confidence 888774 57777888889999986
|
| >2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-09 Score=93.31 Aligned_cols=109 Identities=15% Similarity=0.117 Sum_probs=86.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|++|...|++|++|||+++.. .+.+... .++++++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 159 IG~~vA~~l~~~G~~V~~~d~~~~~~---~~~~~~~-~~l~ell~~aDvV~l~~Plt~~t~~li~~--~~l~~mk~gail 232 (343)
T 2yq5_A 159 IGSAVAEIFSAMGAKVIAYDVAYNPE---FEPFLTY-TDFDTVLKEADIVSLHTPLFPSTENMIGE--KQLKEMKKSAYL 232 (343)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCGG---GTTTCEE-CCHHHHHHHCSEEEECCCCCTTTTTCBCH--HHHHHSCTTCEE
T ss_pred HHHHHHHHHhhCCCEEEEECCChhhh---hhccccc-cCHHHHHhcCCEEEEcCCCCHHHHHHhhH--HHHhhCCCCcEE
Confidence 89999999999999999999997651 1223333 48999999999999999987777777643 456778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTK 116 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~ 116 (286)
||+|+..+...+.+.+.+.+..+....--|+..++
T Consensus 233 IN~aRg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 267 (343)
T 2yq5_A 233 INCARGELVDTGALIKALQDGEIAGAGLDTLAGES 267 (343)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSSSCEEESCCTTGG
T ss_pred EECCCChhhhHHHHHHHHHcCCCcEEEecccccCC
Confidence 99999999999999999987765443333665544
|
| >4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=98.84 E-value=4.1e-09 Score=92.74 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=84.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+++...|++|.+|||++. .+...+.|+.. .++++++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 187 IG~~vA~~l~~fG~~V~~~d~~~~-~~~~~~~g~~~-~~l~ell~~aDvV~l~~Plt~~T~~li~~--~~l~~mk~gail 262 (365)
T 4hy3_A 187 LGKALRRVLSGFRARIRVFDPWLP-RSMLEENGVEP-ASLEDVLTKSDFIFVVAAVTSENKRFLGA--EAFSSMRRGAAF 262 (365)
T ss_dssp HHHHHHHHHTTSCCEEEEECSSSC-HHHHHHTTCEE-CCHHHHHHSCSEEEECSCSSCC---CCCH--HHHHTSCTTCEE
T ss_pred ccHHHHHhhhhCCCEEEEECCCCC-HHHHhhcCeee-CCHHHHHhcCCEEEEcCcCCHHHHhhcCH--HHHhcCCCCcEE
Confidence 899999999999999999999863 34445567764 58999999999999999988888888753 467779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 114 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~ 114 (286)
||+|.+.+.....+.+.+.+..+. ..-.|+..
T Consensus 263 IN~aRG~~vde~aL~~aL~~g~i~-aaLDV~~~ 294 (365)
T 4hy3_A 263 ILLSRADVVDFDALMAAVSSGHIV-AASDVYPE 294 (365)
T ss_dssp EECSCGGGSCHHHHHHHHHTTSSE-EEESCCSS
T ss_pred EECcCCchhCHHHHHHHHHcCCce-EEeeCCCC
Confidence 999999999999999988776554 22334443
|
| >3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A | Back alignment and structure |
|---|
Probab=98.80 E-value=8.1e-10 Score=95.61 Aligned_cols=109 Identities=11% Similarity=0.082 Sum_probs=84.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|++|...|++|++|||++++.+.+... ....++++++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 150 IG~~vA~~l~~~G~~V~~~dr~~~~~~~~~~~--~~~~~l~ell~~aDiV~l~~Plt~~t~~li~~--~~l~~mk~gail 225 (315)
T 3pp8_A 150 LGAKVAESLQAWGFPLRCWSRSRKSWPGVESY--VGREELRAFLNQTRVLINLLPNTAQTVGIINS--ELLDQLPDGAYV 225 (315)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCCCCTTCEEE--ESHHHHHHHHHTCSEEEECCCCCGGGTTCBSH--HHHTTSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhhhhhhhh--cccCCHHHHHhhCCEEEEecCCchhhhhhccH--HHHhhCCCCCEE
Confidence 89999999999999999999998653221111 11257899999999999999977777877743 466778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 114 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~ 114 (286)
||+|.......+.+.+.+.+..+....-.|+..
T Consensus 226 IN~aRG~~vd~~aL~~aL~~g~i~gA~lDV~~~ 258 (315)
T 3pp8_A 226 LNLARGVHVQEADLLAALDSGKLKGAMLDVFSQ 258 (315)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCSS
T ss_pred EECCCChhhhHHHHHHHHHhCCccEEEcCCCCC
Confidence 999999999999999998776554333334443
|
| >1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* | Back alignment and structure |
|---|
Probab=98.80 E-value=7.4e-09 Score=90.47 Aligned_cols=99 Identities=17% Similarity=0.170 Sum_probs=82.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|++|||++++. +. .++...+++.+++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 157 IG~~~A~~l~~~G~~V~~~d~~~~~~--~~-~~~~~~~~l~ell~~aDvV~l~~p~~~~t~~li~~--~~l~~mk~ga~l 231 (333)
T 1j4a_A 157 IGQVFMQIMEGFGAKVITYDIFRNPE--LE-KKGYYVDSLDDLYKQADVISLHVPDVPANVHMIND--ESIAKMKQDVVI 231 (333)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHH--HH-HTTCBCSCHHHHHHHCSEEEECSCCCGGGTTCBSH--HHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh--HH-hhCeecCCHHHHHhhCCEEEEcCCCcHHHHHHHhH--HHHhhCCCCcEE
Confidence 89999999999999999999998764 22 23555568999999999999999987777777642 355678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
||+++..+...+.+.+.+.+..+.
T Consensus 232 In~arg~~vd~~aL~~aL~~g~i~ 255 (333)
T 1j4a_A 232 VNVSRGPLVDTDAVIRGLDSGKIF 255 (333)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEE
T ss_pred EECCCCcccCHHHHHHHHHhCCce
Confidence 999999999999999998876544
|
| >3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=98.79 E-value=2.9e-09 Score=93.92 Aligned_cols=107 Identities=19% Similarity=0.159 Sum_probs=85.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhH----HHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD----VLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~----~~~v~~~~~~l~~~l~~ 77 (286)
||+.+|++|...|++|.+||++.+.. .......++++++++||+|++++|...+ .+.++.. +.++.+++
T Consensus 130 IG~~vA~~l~a~G~~V~~~d~~~~~~-----~~~~~~~sl~ell~~aDiV~l~~Plt~~g~~~T~~li~~--~~l~~mk~ 202 (381)
T 3oet_A 130 VGSRLQTRLEALGIRTLLCDPPRAAR-----GDEGDFRTLDELVQEADVLTFHTPLYKDGPYKTLHLADE--TLIRRLKP 202 (381)
T ss_dssp HHHHHHHHHHHTTCEEEEECHHHHHT-----TCCSCBCCHHHHHHHCSEEEECCCCCCSSTTCCTTSBCH--HHHHHSCT
T ss_pred HHHHHHHHHHHCCCEEEEECCChHHh-----ccCcccCCHHHHHhhCCEEEEcCcCCccccccchhhcCH--HHHhcCCC
Confidence 89999999999999999999864432 1334567899999999999999997766 6766643 46677899
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCH
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGT 115 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~ 115 (286)
|.++||+|.+.+...+.+.+.+.+..+....-.|+..+
T Consensus 203 gailIN~aRG~vvde~aL~~aL~~g~i~gA~LDV~e~E 240 (381)
T 3oet_A 203 GAILINACRGPVVDNAALLARLNAGQPLSVVLDVWEGE 240 (381)
T ss_dssp TEEEEECSCGGGBCHHHHHHHHHTTCCEEEEESCCTTT
T ss_pred CcEEEECCCCcccCHHHHHHHHHhCCCeEEEeeccccC
Confidence 99999999999999999999998876654444455443
|
| >3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.7e-09 Score=94.35 Aligned_cols=108 Identities=17% Similarity=0.153 Sum_probs=82.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+++...|++|++||+++... ..+.....++++++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 167 IG~~vA~~l~~~G~~V~~yd~~~~~~----~~~~~~~~sl~ell~~aDvV~lhvPlt~~T~~li~~--~~l~~mk~gail 240 (416)
T 3k5p_A 167 IGSQVGNLAESLGMTVRYYDTSDKLQ----YGNVKPAASLDELLKTSDVVSLHVPSSKSTSKLITE--AKLRKMKKGAFL 240 (416)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCCCC----BTTBEECSSHHHHHHHCSEEEECCCC-----CCBCH--HHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCcchhc----ccCcEecCCHHHHHhhCCEEEEeCCCCHHHhhhcCH--HHHhhCCCCcEE
Confidence 89999999999999999999985421 124456679999999999999999988888887743 456778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGT 115 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~ 115 (286)
||+|...+...+.+.+.+.+..+....-.|+..+
T Consensus 241 IN~aRG~vvd~~aL~~aL~~g~i~gAalDVf~~E 274 (416)
T 3k5p_A 241 INNARGSDVDLEALAKVLQEGHLAGAAIDVFPVE 274 (416)
T ss_dssp EECSCTTSBCHHHHHHHHHTTSEEEEEECCCSSC
T ss_pred EECCCChhhhHHHHHHHHHcCCccEEEeCCCCCC
Confidence 9999999999999999987765543333455443
|
| >2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.75 E-value=7.4e-09 Score=89.57 Aligned_cols=93 Identities=16% Similarity=0.112 Sum_probs=77.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|++|||++++.. + ...++.+++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 155 IG~~~A~~l~~~G~~V~~~d~~~~~~~------~-~~~~l~ell~~aDvV~l~~p~~~~t~~li~~--~~l~~mk~ga~l 225 (311)
T 2cuk_A 155 IGQAVAKRALAFGMRVVYHARTPKPLP------Y-PFLSLEELLKEADVVSLHTPLTPETHRLLNR--ERLFAMKRGAIL 225 (311)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSSS------S-CBCCHHHHHHHCSEEEECCCCCTTTTTCBCH--HHHTTSCTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCCcccc------c-ccCCHHHHHhhCCEEEEeCCCChHHHhhcCH--HHHhhCCCCcEE
Confidence 899999999999999999999987643 2 3568999999999999999987677777642 356678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
||+|+..+.....+.+.+. ..+
T Consensus 226 in~srg~~vd~~aL~~aL~-g~i 247 (311)
T 2cuk_A 226 LNTARGALVDTEALVEALR-GHL 247 (311)
T ss_dssp EECSCGGGBCHHHHHHHHT-TTS
T ss_pred EECCCCCccCHHHHHHHHh-CcC
Confidence 9999998888888888887 544
|
| >1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=5.9e-09 Score=93.20 Aligned_cols=97 Identities=19% Similarity=0.200 Sum_probs=81.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+++...|++|++|||++... ..++....+++|++++||+|++++|...+.+.++.. +.++.+++|.++
T Consensus 156 IG~~vA~~l~~~G~~V~~~d~~~~~~----~~~~~~~~~l~ell~~aDvV~l~~P~t~~t~~li~~--~~l~~mk~ga~l 229 (404)
T 1sc6_A 156 IGTQLGILAESLGMYVYFYDIENKLP----LGNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGA--KEISLMKPGSLL 229 (404)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCC----CTTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCH--HHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhc----cCCceecCCHHHHHhcCCEEEEccCCChHHHHHhhH--HHHhhcCCCeEE
Confidence 89999999999999999999986532 123566678999999999999999988788887742 456779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
||+|+..+.....+.+.+.+..+
T Consensus 230 IN~aRg~~vd~~aL~~aL~~g~i 252 (404)
T 1sc6_A 230 INASRGTVVDIPALADALASKHL 252 (404)
T ss_dssp EECSCSSSBCHHHHHHHHHTTSE
T ss_pred EECCCChHHhHHHHHHHHHcCCc
Confidence 99999999998999988876544
|
| >1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-08 Score=88.35 Aligned_cols=109 Identities=17% Similarity=0.180 Sum_probs=85.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|++|||++++. + ..++. ..++.+++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 156 IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~P~~~~t~~li~~--~~l~~mk~ga~l 229 (333)
T 1dxy_A 156 IGQVAIKLFKGFGAKVIAYDPYPMKG--D-HPDFD-YVSLEDLFKQSDVIDLHVPGIEQNTHIINE--AAFNLMKPGAIV 229 (333)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSS--C-CTTCE-ECCHHHHHHHCSEEEECCCCCGGGTTSBCH--HHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCcchh--h-Hhccc-cCCHHHHHhcCCEEEEcCCCchhHHHHhCH--HHHhhCCCCcEE
Confidence 79999999999999999999987653 1 22333 348999999999999999988777777642 356778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTK 116 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~ 116 (286)
||+|+..+...+.+.+.+.+..+.-..--|+..++
T Consensus 230 In~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~EP 264 (333)
T 1dxy_A 230 INTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 264 (333)
T ss_dssp EECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred EECCCCcccCHHHHHHHHHhCCccEEEEecCCCCC
Confidence 99999999999999998887654422223555543
|
| >2duw_A Putative COA-binding protein; ligand binding protein; NMR {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=98.68 E-value=6.3e-09 Score=79.82 Aligned_cols=93 Identities=13% Similarity=0.123 Sum_probs=74.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc--hHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT--DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~--~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..++++|.+.||+|+.+|++. +.+ .|..++.|++|+.+..|++++|+|+ ..+.+++.+ +.+ ...+.
T Consensus 28 ~G~~~~~~L~~~G~~v~~vnp~~~g~~i-----~G~~~~~sl~el~~~~Dlvii~vp~-~~v~~v~~~---~~~-~g~~~ 97 (145)
T 2duw_A 28 PSYRVMKYLLDQGYHVIPVSPKVAGKTL-----LGQQGYATLADVPEKVDMVDVFRNS-EAAWGVAQE---AIA-IGAKT 97 (145)
T ss_dssp HHHHHHHHHHHHTCCEEEECSSSTTSEE-----TTEECCSSTTTCSSCCSEEECCSCS-THHHHHHHH---HHH-HTCCE
T ss_pred hHHHHHHHHHHCCCEEEEeCCccccccc-----CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHHH---HHH-cCCCE
Confidence 78899999999999987777765 432 4888899999999999999999995 688888764 444 34567
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+|+++++. .+++.+.+++.|++++.
T Consensus 98 i~i~~~~~----~~~l~~~a~~~Gi~~ig 122 (145)
T 2duw_A 98 LWLQLGVI----NEQAAVLAREAGLSVVM 122 (145)
T ss_dssp EECCTTCC----CHHHHHHHHTTTCEEEC
T ss_pred EEEcCChH----HHHHHHHHHHcCCEEEc
Confidence 88887665 56778888889999883
|
| >2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=4e-08 Score=82.99 Aligned_cols=98 Identities=16% Similarity=0.191 Sum_probs=74.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhH--HHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQD--VLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~--~~~v~~~~~~l~~~l~~g 78 (286)
||.+++..|.+.|++|++|||++++.+.+.+. |.. .+++.++ +++|+||+|+|.+.. +..++. .+.+++|
T Consensus 127 ~g~~~a~~l~~~g~~v~v~~r~~~~~~~l~~~~~~~-~~~~~~~-~~~Divi~~tp~~~~~~~~~~l~-----~~~l~~g 199 (263)
T 2d5c_A 127 AGRAVAFALREAGLEVWVWNRTPQRALALAEEFGLR-AVPLEKA-REARLLVNATRVGLEDPSASPLP-----AELFPEE 199 (263)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHTCE-ECCGGGG-GGCSEEEECSSTTTTCTTCCSSC-----GGGSCSS
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccc-hhhHhhc-cCCCEEEEccCCCCCCCCCCCCC-----HHHcCCC
Confidence 68999999999999999999999998887654 655 5678888 999999999997521 112221 2457789
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
++|+|+++. |..+ ++.+.+.++|+.+++
T Consensus 200 ~~viD~~~~-p~~t-~l~~~a~~~g~~~v~ 227 (263)
T 2d5c_A 200 GAAVDLVYR-PLWT-RFLREAKAKGLKVQT 227 (263)
T ss_dssp SEEEESCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred CEEEEeecC-Cccc-HHHHHHHHCcCEEEC
Confidence 999999886 4433 466777778887775
|
| >2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=98.67 E-value=2.8e-08 Score=85.64 Aligned_cols=111 Identities=14% Similarity=0.186 Sum_probs=81.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc--cCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM--ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~--~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|...|++|++|||++++.+.+.+.|+.. ..++.++++++|+|++++|.. ++. +...+.++++.
T Consensus 168 iG~~~a~~l~~~G~~V~~~d~~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~-----~i~--~~~~~~mk~g~ 240 (300)
T 2rir_A 168 TGMTIARTFAALGANVKVGARSSAHLARITEMGLVPFHTDELKEHVKDIDICINTIPSM-----ILN--QTVLSSMTPKT 240 (300)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCEEEEGGGHHHHSTTCSEEEECCSSC-----CBC--HHHHTTSCTTC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCCeEEchhhHHHHhhCCCEEEECCChh-----hhC--HHHHHhCCCCC
Confidence 789999999999999999999998877776667654 357889999999999999962 111 11345578999
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEecc-CCCCHHhhhcCc
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDAP-VSGGTKAAQEAT 122 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~p-v~g~~~~a~~g~ 122 (286)
++||++....... + +.....|+.++++| +.+....+..+.
T Consensus 241 ~lin~a~g~~~~~--~-~~a~~~G~~~i~~pg~~g~v~~a~a~~ 281 (300)
T 2rir_A 241 LILDLASRPGGTD--F-KYAEKQGIKALLAPGLPGIVAPKTAGQ 281 (300)
T ss_dssp EEEECSSTTCSBC--H-HHHHHHTCEEEECCCHHHHHCHHHHHH
T ss_pred EEEEEeCCCCCcC--H-HHHHHCCCEEEECCCCCCcHHHHHHHH
Confidence 9999997644432 2 34456789998888 444443444444
|
| >2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.8e-08 Score=89.14 Aligned_cols=97 Identities=22% Similarity=0.198 Sum_probs=79.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhH----HHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQD----VLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~----~~~v~~~~~~l~~~l~~ 77 (286)
||..+|++|...|++|.+||++++.. ..|. ...++++++++||+|++++|...+ .+.++.. ..++.+++
T Consensus 127 IG~~vA~~l~~~G~~V~~~d~~~~~~----~~g~-~~~~l~ell~~aDvV~l~~Plt~~g~~~T~~li~~--~~l~~mk~ 199 (380)
T 2o4c_A 127 VGGRLVEVLRGLGWKVLVCDPPRQAR----EPDG-EFVSLERLLAEADVISLHTPLNRDGEHPTRHLLDE--PRLAALRP 199 (380)
T ss_dssp HHHHHHHHHHHTTCEEEEECHHHHHH----STTS-CCCCHHHHHHHCSEEEECCCCCSSSSSCCTTSBCH--HHHHTSCT
T ss_pred HHHHHHHHHHHCCCEEEEEcCChhhh----ccCc-ccCCHHHHHHhCCEEEEeccCccccccchhhhcCH--HHHhhCCC
Confidence 89999999999999999999876532 2343 346899999999999999998766 6666642 46677899
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCc
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~ 105 (286)
|.++||+|+..+...+.+.+.+.+..+.
T Consensus 200 gailIN~sRG~vvd~~aL~~aL~~g~i~ 227 (380)
T 2o4c_A 200 GTWLVNASRGAVVDNQALRRLLEGGADL 227 (380)
T ss_dssp TEEEEECSCGGGBCHHHHHHHHHTTCCE
T ss_pred CcEEEECCCCcccCHHHHHHHHHhCCCc
Confidence 9999999999998889999988776543
|
| >1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-08 Score=88.29 Aligned_cols=108 Identities=15% Similarity=0.142 Sum_probs=83.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|++|...|++|++|||++++. + +.++. ..++.+++++||+|++++|...+.+.++.. ..++.+++|.++
T Consensus 157 IG~~~A~~l~~~G~~V~~~d~~~~~~--~-~~~~~-~~~l~ell~~aDvV~~~~p~t~~t~~li~~--~~l~~mk~ga~l 230 (331)
T 1xdw_A 157 IGRVAAQIFHGMGATVIGEDVFEIKG--I-EDYCT-QVSLDEVLEKSDIITIHAPYIKENGAVVTR--DFLKKMKDGAIL 230 (331)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCS--C-TTTCE-ECCHHHHHHHCSEEEECCCCCTTTCCSBCH--HHHHTSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCCccHH--H-Hhccc-cCCHHHHHhhCCEEEEecCCchHHHHHhCH--HHHhhCCCCcEE
Confidence 79999999999999999999987653 2 22333 458999999999999999987777676642 356678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGT 115 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~ 115 (286)
||+|+..+...+.+.+.+.+..+....--|+..+
T Consensus 231 in~srg~~vd~~aL~~aL~~g~i~gA~LDV~~~E 264 (331)
T 1xdw_A 231 VNCARGQLVDTEAVIEAVESGKLGGYGCDVLDGE 264 (331)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEEEEEESCCTTG
T ss_pred EECCCcccccHHHHHHHHHhCCceEEEEecCCCC
Confidence 9999999999999999988766543322355443
|
| >2hk9_A Shikimate dehydrogenase; shikimate pathway, drug design, oxidoreductase; HET: ATR SKM NAP; 2.20A {Aquifex aeolicus} PDB: 2hk8_A 2hk7_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-08 Score=85.80 Aligned_cols=99 Identities=17% Similarity=0.224 Sum_probs=73.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc-cccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI-LKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l-~~~l~~g~ 79 (286)
||.+++..|.+.|++|++|||++++.+.+.+. |+...+++.++++++|+||+|+|.+.. ..+.. -+ .+.+++++
T Consensus 140 ~g~aia~~L~~~g~~V~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~aDiVi~atp~~~~-~~~~~---~i~~~~l~~g~ 215 (275)
T 2hk9_A 140 ASRAVIYALVKEGAKVFLWNRTKEKAIKLAQKFPLEVVNSPEEVIDKVQVIVNTTSVGLK-DEDPE---IFNYDLIKKDH 215 (275)
T ss_dssp HHHHHHHHHHHHTCEEEEECSSHHHHHHHTTTSCEEECSCGGGTGGGCSEEEECSSTTSS-TTCCC---SSCGGGCCTTS
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHcCCeeehhHHhhhcCCCEEEEeCCCCCC-CCCCC---CCCHHHcCCCC
Confidence 68999999999999999999999998888654 666666888889999999999997531 11111 01 24577899
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+|+|+++ .. .++.+...++|+.+++
T Consensus 216 ~viDv~~-~~---t~ll~~a~~~g~~~v~ 240 (275)
T 2hk9_A 216 VVVDIIY-KE---TKLLKKAKEKGAKLLD 240 (275)
T ss_dssp EEEESSS-SC---CHHHHHHHHTTCEEEC
T ss_pred EEEEcCC-Ch---HHHHHHHHHCcCEEEC
Confidence 9999988 22 2344555667887775
|
| >1x7d_A Ornithine cyclodeaminase; binds NAD+, binds L-ornithine, binds L-proline, 2 bundle, beta barrel, rossmann fold, lyase; HET: NAD ORN MES; 1.60A {Pseudomonas putida} SCOP: c.2.1.13 PDB: 1u7h_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.5e-08 Score=89.07 Aligned_cols=101 Identities=15% Similarity=0.191 Sum_probs=78.8
Q ss_pred ccHHHHHHHHh--CCCcEEEEcCCchHHHHHHHc-----C--CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQF--QGHDVIVYDKNTDASQTLAKE-----G--ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~--~G~~V~~~dr~~~~~~~l~~~-----g--~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
||..++..|.. ...+|.+|||++++++++.+. | +..+++++++++++|+||+|+|++ ..+.++. .
T Consensus 140 ~a~~~a~al~~~~~~~~V~V~~r~~~~a~~la~~~~~~~g~~~~~~~~~~eav~~aDiVi~aTps~-~~~pvl~-----~ 213 (350)
T 1x7d_A 140 QSEFQALAFHKHLGIEEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-AYATIIT-----P 213 (350)
T ss_dssp THHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-SEEEEEC-----G
T ss_pred HHHHHHHHHHHhCCCcEEEEEcCCHHHHHHHHHHHHhccCceEEEeCCHHHHHhcCCEEEEeccCC-CCCceec-----H
Confidence 67888888754 346899999999999988764 5 356789999999999999999975 2233432 2
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
+.+++|+.|+++++..|. .+++...+..++..|+|.
T Consensus 214 ~~l~~G~~V~~vgs~~p~-~~El~~~~~~~a~v~vD~ 249 (350)
T 1x7d_A 214 DMLEPGMHLNAVGGDCPG-KTELHADVLRNARVFVEY 249 (350)
T ss_dssp GGCCTTCEEEECSCCBTT-BEEECHHHHHTSEEEESS
T ss_pred HHcCCCCEEEECCCCCCC-ceeeCHHHHhcCcEEECC
Confidence 457899999999999888 667777777777788885
|
| >2egg_A AROE, shikimate 5-dehydrogenase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 2.25A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-07 Score=81.15 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=73.5
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CC---ccc--CCHHHHhhcCcEEEEecCChhHH--HHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GA---NMA--LSLSTLASGAEFIISMLPASQDV--LDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~---~~~--~s~~e~~~~adivi~~v~~~~~~--~~v~~~~~~l~ 72 (286)
||.+++..|.+.|. +|++|||++++++.+.+. +. .+. +++.+.+.++|+||.|+|.+..- +.+... .
T Consensus 152 ~g~aia~~L~~~G~~~V~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~~~~~~aDivIn~t~~~~~~~~~~~~i~----~ 227 (297)
T 2egg_A 152 GARGIYFSLLSTAAERIDMANRTVEKAERLVREGDERRSAYFSLAEAETRLAEYDIIINTTSVGMHPRVEVQPLS----L 227 (297)
T ss_dssp HHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHSCSSSCCEECHHHHHHTGGGCSEEEECSCTTCSSCCSCCSSC----C
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHhhhccCceeeHHHHHhhhccCCEEEECCCCCCCCCCCCCCCC----H
Confidence 68899999999998 999999999999888754 33 222 24567778999999999975321 111110 1
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
..++++.+++|+++. |..+. +.+..+++|+.+++
T Consensus 228 ~~l~~~~~v~D~~y~-P~~T~-ll~~A~~~G~~~v~ 261 (297)
T 2egg_A 228 ERLRPGVIVSDIIYN-PLETK-WLKEAKARGARVQN 261 (297)
T ss_dssp TTCCTTCEEEECCCS-SSSCH-HHHHHHHTTCEEEC
T ss_pred HHcCCCCEEEEcCCC-CCCCH-HHHHHHHCcCEEEC
Confidence 346789999999984 66554 66777888888775
|
| >3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.39 E-value=5e-07 Score=77.48 Aligned_cols=102 Identities=17% Similarity=0.140 Sum_probs=74.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|...|.+|++|||++++.+.+.+.|+... .++.++++++|+|++++|.. ++.. ..++.++++.
T Consensus 166 iG~~~a~~l~~~G~~V~~~dr~~~~~~~~~~~g~~~~~~~~l~~~l~~aDvVi~~~p~~-----~i~~--~~l~~mk~~~ 238 (293)
T 3d4o_A 166 VGMSVARKFAALGAKVKVGARESDLLARIAEMGMEPFHISKAAQELRDVDVCINTIPAL-----VVTA--NVLAEMPSHT 238 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTSEEEEGGGHHHHTTTCSEEEECCSSC-----CBCH--HHHHHSCTTC
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHCCCeecChhhHHHHhcCCCEEEECCChH-----HhCH--HHHHhcCCCC
Confidence 7899999999999999999999988777766676643 57888899999999999962 1111 1334578999
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEeccCCC
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
++||++....... + +.....|+.++..|...
T Consensus 239 ~lin~ar~~~~~~--~-~~a~~~Gv~~~~~~~l~ 269 (293)
T 3d4o_A 239 FVIDLASKPGGTD--F-RYAEKRGIKALLVPGLP 269 (293)
T ss_dssp EEEECSSTTCSBC--H-HHHHHHTCEEEECCCHH
T ss_pred EEEEecCCCCCCC--H-HHHHHCCCEEEECCCCC
Confidence 9999987544332 2 34455677777655443
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.31 E-value=1.2e-06 Score=69.52 Aligned_cols=100 Identities=15% Similarity=0.088 Sum_probs=68.6
Q ss_pred ccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHcCCccc----CC---HHHH--hhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKEGANMA----LS---LSTL--ASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~~----~s---~~e~--~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||..+++.|.+. |++|+++|+++++.+.+.+.|+... .+ +.++ ++++|+||+|+|++.....++. .
T Consensus 50 ~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~~~~~~~~~~~~----~ 125 (183)
T 3c85_A 50 IGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAMPHHQGNQTALE----Q 125 (183)
T ss_dssp HHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECCSSHHHHHHHHH----H
T ss_pred HHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeCCChHHHHHHHH----H
Confidence 799999999999 9999999999999998888776533 22 2333 5679999999998766666554 3
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEecc
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 110 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~p 110 (286)
...+.+...++.. +..+... +.+.+.|+.++..|
T Consensus 126 ~~~~~~~~~ii~~-~~~~~~~----~~l~~~G~~~vi~p 159 (183)
T 3c85_A 126 LQRRNYKGQIAAI-AEYPDQL----EGLLESGVDAAFNI 159 (183)
T ss_dssp HHHTTCCSEEEEE-ESSHHHH----HHHHHHTCSEEEEH
T ss_pred HHHHCCCCEEEEE-ECCHHHH----HHHHHcCCCEEEch
Confidence 3334444444432 3334433 34456688777655
|
| >1omo_A Alanine dehydrogenase; two-domain, beta-sandwich-dimer, rossmann-fold NAD domain, human MU crystallin homolog; HET: NAD; 2.32A {Archaeoglobus fulgidus} SCOP: c.2.1.13 PDB: 1vll_A | Back alignment and structure |
|---|
Probab=98.30 E-value=4.1e-07 Score=79.06 Aligned_cols=97 Identities=14% Similarity=0.166 Sum_probs=71.7
Q ss_pred ccHHHHHHHHh--CCCcEEEEcCCchHHHHHHHc------CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQF--QGHDVIVYDKNTDASQTLAKE------GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~--~G~~V~~~dr~~~~~~~l~~~------g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..++..|.+ ...+|.+|||++++++++.+. .+. ++++++++ ++|+|++|+|+.. .++. .+
T Consensus 136 ~a~~~~~al~~~~~~~~V~v~~r~~~~a~~la~~~~~~~~~~~-~~~~~e~v-~aDvVi~aTp~~~---pv~~-----~~ 205 (322)
T 1omo_A 136 QAYFQLEALRRVFDIGEVKAYDVREKAAKKFVSYCEDRGISAS-VQPAEEAS-RCDVLVTTTPSRK---PVVK-----AE 205 (322)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECSSHHHHHHHHHHHHHTTCCEE-ECCHHHHT-SSSEEEECCCCSS---CCBC-----GG
T ss_pred HHHHHHHHHHHhCCccEEEEECCCHHHHHHHHHHHHhcCceEE-ECCHHHHh-CCCEEEEeeCCCC---ceec-----HH
Confidence 56677888876 346899999999999888653 244 78899999 9999999999752 3332 24
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
.+++|+.|+++++..|. .+++...+..++..|+|.
T Consensus 206 ~l~~G~~V~~ig~~~p~-~~el~~~~~~~a~v~vD~ 240 (322)
T 1omo_A 206 WVEEGTHINAIGADGPG-KQELDVEILKKAKIVVDD 240 (322)
T ss_dssp GCCTTCEEEECSCCSTT-CCCBCHHHHHTEEEEESC
T ss_pred HcCCCeEEEECCCCCCC-ccccCHHHHhcCeEEECC
Confidence 57899999999988887 455555555555567764
|
| >1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=98.29 E-value=5.8e-06 Score=62.10 Aligned_cols=99 Identities=16% Similarity=0.155 Sum_probs=66.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcc-cC---CHHHH----hhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANM-AL---SLSTL----ASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~-~~---s~~e~----~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
+|..++..|.+.|++|+++|+++++.+.+.+. |... .. +...+ ++++|+||+|+|++..-..+.. +.
T Consensus 15 iG~~~a~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~~~~~----~~ 90 (140)
T 1lss_A 15 VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEVNLMSSL----LA 90 (140)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHHHHHHHH----HH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHhcCcEEEEcCCCCHHHHHHcCcccCCEEEEeeCCchHHHHHHH----HH
Confidence 68999999999999999999999998888654 6532 11 22221 5689999999998643333332 34
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEecc
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 110 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~p 110 (286)
+.+.++++|+..++ +... +.+.+.|+.++-.|
T Consensus 91 ~~~~~~~ii~~~~~--~~~~----~~l~~~g~~~v~~p 122 (140)
T 1lss_A 91 KSYGINKTIARISE--IEYK----DVFERLGVDVVVSP 122 (140)
T ss_dssp HHTTCCCEEEECSS--TTHH----HHHHHTTCSEEECH
T ss_pred HHcCCCEEEEEecC--HhHH----HHHHHcCCCEEECH
Confidence 44666777775443 3332 24456777776655
|
| >3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium} | Back alignment and structure |
|---|
Probab=98.29 E-value=6.4e-07 Score=68.33 Aligned_cols=77 Identities=16% Similarity=0.280 Sum_probs=61.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCc--ccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GAN--MALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~--~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||..++..|.+.|++|++|||++++.+.+.+. |.. ..+++.++++++|+||.|+|.+. .++. ...+++|
T Consensus 32 iG~~~a~~l~~~g~~v~v~~r~~~~~~~~a~~~~~~~~~~~~~~~~~~~~Divi~at~~~~---~~~~-----~~~l~~g 103 (144)
T 3oj0_A 32 LASEIAPYFSYPQYKVTVAGRNIDHVRAFAEKYEYEYVLINDIDSLIKNNDVIITATSSKT---PIVE-----ERSLMPG 103 (144)
T ss_dssp HHHHHGGGCCTTTCEEEEEESCHHHHHHHHHHHTCEEEECSCHHHHHHTCSEEEECSCCSS---CSBC-----GGGCCTT
T ss_pred HHHHHHHHHHhCCCEEEEEcCCHHHHHHHHHHhCCceEeecCHHHHhcCCCEEEEeCCCCC---cEee-----HHHcCCC
Confidence 68889999999999999999999998887643 544 46788999999999999999762 2221 2456789
Q ss_pred CEEEEcCC
Q psy764 79 VIVIDSST 86 (286)
Q Consensus 79 ~ivid~st 86 (286)
.+++|.+.
T Consensus 104 ~~vid~~~ 111 (144)
T 3oj0_A 104 KLFIDLGN 111 (144)
T ss_dssp CEEEECCS
T ss_pred CEEEEccC
Confidence 99999875
|
| >3zwc_A Peroxisomal bifunctional enzyme; beta oxidation pathway, oxidoreductase, lipid metabolism, LY isomerase, peroxisome, fatty acid metabolism; HET: NAD HSC; 2.30A {Rattus norvegicus} PDB: 3zw9_A* 3zw8_A* 3zwa_A* 3zwb_A* 2x58_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=1.3e-05 Score=76.87 Aligned_cols=178 Identities=11% Similarity=0.128 Sum_probs=109.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c-----------CCcccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E-----------GANMALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~-----------g~~~~~s~~e~~~~adivi~~v~~~~ 59 (286)
||..+|..++.+|++|+++|++++..+...+ . .+...++..+ +++||+||=+|+-.-
T Consensus 327 MG~gIA~~~a~aG~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~aDlVIEAV~E~l 405 (742)
T 3zwc_A 327 MGRGIAISFARVGISVVAVESDPKQLDAAKKIITFTLEKEASRAHQNGQASAKPKLRFSSSTKE-LSTVDLVVEAVFEDM 405 (742)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCEEEESCGGG-GGSCSEEEECCCSCH
T ss_pred HHHHHHHHHHhCCCchhcccchHhhhhhHHHHHHHHHHHHHHhccccchhhhhhhhcccCcHHH-HhhCCEEEEeccccH
Confidence 8999999999999999999999876543321 0 1234455544 679999999999877
Q ss_pred HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHhhHHH
Q psy764 60 DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKSSLEK 136 (286)
Q Consensus 60 ~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~~~ 136 (286)
+++.-++. .+-+..+++.|+..-|+..|.+ ++++.+ ++.-+|+..-.+..+.. -.++=++.| +++++++
T Consensus 406 ~iK~~vf~--~le~~~~~~aIlASNTSsl~i~--~ia~~~-~~p~r~ig~HFfnP~~~---m~LVEvi~g~~Ts~e~~~~ 477 (742)
T 3zwc_A 406 NLKKKVFA--ELSALCKPGAFLCTNTSALNVD--DIASST-DRPQLVIGTHFFSPAHV---MRLLEVIPSRYSSPTTIAT 477 (742)
T ss_dssp HHHHHHHH--HHHHHSCTTCEEEECCSSSCHH--HHHTTS-SCGGGEEEEECCSSTTT---CCEEEEEECSSCCHHHHHH
T ss_pred HHHHHHHH--HHhhcCCCCceEEecCCcCChH--HHHhhc-CCccccccccccCCCCC---CceEEEecCCCCCHHHHHH
Confidence 77654432 2555677777776543333332 333332 22223443322222221 122333333 5889999
Q ss_pred HHHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Q psy764 137 AKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVIN 197 (286)
Q Consensus 137 ~~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~ 197 (286)
+..+.+.+|+.++.+.+. .|. +.|-+. ...+.|++.+.+. |.+++++-+++.
T Consensus 478 ~~~~~~~lgK~pV~vkd~-pGF----i~NRi~---~~~~~ea~~l~~e-G~~~~~id~a~~ 529 (742)
T 3zwc_A 478 VMSLSKKIGKIGVVVGNC-YGF----VGNRML---APYYNQGFFLLEE-GSKPEDVDGVLE 529 (742)
T ss_dssp HHHHHHHTTCEEEECCCS-TTT----THHHHH---HHHHHHHHHHHHT-TCCHHHHHHHHH
T ss_pred HHHHHHHhCCCCcccCCC-CCc----cHHHHh---hHHHHHHHHHHHc-CCCHHHHHHHHH
Confidence 999999999998888762 222 224332 2345777776654 677766666553
|
| >3don_A Shikimate dehydrogenase; alpha-beta structure, rossman fold, amino-acid biosynthesis, amino acid biosynthesis, NADP, oxidoreductase; 2.10A {Staphylococcus epidermidis} PDB: 3doo_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=4e-07 Score=77.24 Aligned_cols=100 Identities=12% Similarity=-0.007 Sum_probs=69.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcC-CcccCCHHHHhhcCcEEEEecCChh--HHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEG-ANMALSLSTLASGAEFIISMLPASQ--DVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g-~~~~~s~~e~~~~adivi~~v~~~~--~~~~v~~~~~~l~~~l~~ 77 (286)
+|.+++..|.+.|. +|+++||++++.+.+.+.. ....+++.++++++|+||.|+|..- .....+. ...+++
T Consensus 128 ~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~~aDiVInaTp~Gm~~~~~~~l~-----~~~l~~ 202 (277)
T 3don_A 128 ASKGIANELYKIVRPTLTVANRTMSRFNNWSLNINKINLSHAESHLDEFDIIINTTPAGMNGNTDSVIS-----LNRLAS 202 (277)
T ss_dssp HHHHHHHHHHTTCCSCCEEECSCGGGGTTCCSCCEEECHHHHHHTGGGCSEEEECCC-------CCSSC-----CTTCCS
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhcccccHhhHHHHhcCCCEEEECccCCCCCCCcCCCC-----HHHcCC
Confidence 57899999999998 8999999999887765431 1123456677789999999998642 1111111 234678
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+.+|+|++.. |..+ .+.+..+++|+..++
T Consensus 203 ~~~V~D~vY~-P~~T-~ll~~A~~~G~~~~~ 231 (277)
T 3don_A 203 HTLVSDIVYN-PYKT-PILIEAEQRGNPIYN 231 (277)
T ss_dssp SCEEEESCCS-SSSC-HHHHHHHHTTCCEEC
T ss_pred CCEEEEecCC-CCCC-HHHHHHHHCcCEEeC
Confidence 9999999887 4444 466777888887765
|
| >3phh_A Shikimate dehydrogenase; shikimate pathway, helicobacter PYL oxidoreductase, alpha/beta domain, rossmann fold; HET: SKM; 1.42A {Helicobacter pylori} PDB: 3phg_A* 3phi_A* 3phj_A* 4foo_A 4fpx_A 4fos_A* 4fr5_A* 4fq8_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=8e-07 Score=74.89 Aligned_cols=101 Identities=18% Similarity=0.139 Sum_probs=70.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++..|.+.|.+|++|||++++++.+.+.|+... +++++. ++|+||.|+|....-...+ ..+++.+.++++.++
T Consensus 129 aaraia~~L~~~G~~v~V~nRt~~ka~~la~~~~~~~-~~~~l~-~~DiVInaTp~Gm~~~~~l-~~~~l~~~l~~~~~v 205 (269)
T 3phh_A 129 SAKALACELKKQGLQVSVLNRSSRGLDFFQRLGCDCF-MEPPKS-AFDLIINATSASLHNELPL-NKEVLKGYFKEGKLA 205 (269)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCTTHHHHHHHTCEEE-SSCCSS-CCSEEEECCTTCCCCSCSS-CHHHHHHHHHHCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHCCCeEe-cHHHhc-cCCEEEEcccCCCCCCCCC-ChHHHHhhCCCCCEE
Confidence 5789999999999999999999999998885565443 333433 8999999998642111111 111222245678999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+|++.. | .+. +.+..+++|+..++
T Consensus 206 ~D~vY~-P-~T~-ll~~A~~~G~~~~~ 229 (269)
T 3phh_A 206 YDLAYG-F-LTP-FLSLAKELKTPFQD 229 (269)
T ss_dssp EESCCS-S-CCH-HHHHHHHTTCCEEC
T ss_pred EEeCCC-C-chH-HHHHHHHCcCEEEC
Confidence 999876 5 443 66677888887776
|
| >1iuk_A Hypothetical protein TT1466; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.2.1.8 PDB: 1iul_A | Back alignment and structure |
|---|
Probab=98.10 E-value=1.3e-06 Score=66.30 Aligned_cols=94 Identities=19% Similarity=0.265 Sum_probs=69.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+|..++++|.+.||+ +|++|+.+ .+++ .|..+..|++|+.+..|++++++|. +.+.+++.+ +.+. ..+.+
T Consensus 28 ~G~~~~~~l~~~G~~--v~~vnp~~~~~~i--~G~~~~~sl~el~~~vDlavi~vp~-~~~~~v~~~---~~~~-gi~~i 98 (140)
T 1iuk_A 28 PAHYVPRYLREQGYR--VLPVNPRFQGEEL--FGEEAVASLLDLKEPVDILDVFRPP-SALMDHLPE---VLAL-RPGLV 98 (140)
T ss_dssp HHHHHHHHHHHTTCE--EEEECGGGTTSEE--TTEECBSSGGGCCSCCSEEEECSCH-HHHTTTHHH---HHHH-CCSCE
T ss_pred hHHHHHHHHHHCCCE--EEEeCCCcccCcC--CCEEecCCHHHCCCCCCEEEEEeCH-HHHHHHHHH---HHHc-CCCEE
Confidence 678999999999997 77777764 2222 4888899999999999999999995 676776653 3332 23457
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
|+..++. .+++.+.++++|++++.
T Consensus 99 ~~~~g~~----~~~~~~~a~~~Gir~vg 122 (140)
T 1iuk_A 99 WLQSGIR----HPEFEKALKEAGIPVVA 122 (140)
T ss_dssp EECTTCC----CHHHHHHHHHTTCCEEE
T ss_pred EEcCCcC----HHHHHHHHHHcCCEEEc
Confidence 7765543 36777788889999884
|
| >3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=98.08 E-value=2.8e-05 Score=58.81 Aligned_cols=100 Identities=11% Similarity=0.102 Sum_probs=65.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc----CCHH---HH-hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA----LSLS---TL-ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~---e~-~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.+.|++|+++|+++++++.+.+.|..+. .+.. ++ ++++|+||+++|++.....+.. ...
T Consensus 18 ~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~~~n~~~~~----~a~ 93 (140)
T 3fwz_A 18 VGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNGYEAGEIVA----SAR 93 (140)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCChHHHHHHHH----HHH
Confidence 6899999999999999999999999999988776432 1222 11 4689999999998765544443 233
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEecc
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 110 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~p 110 (286)
.+.++..+|-. ...+.. .+.+.+.|+..+-.|
T Consensus 94 ~~~~~~~iiar-~~~~~~----~~~l~~~G~d~vi~p 125 (140)
T 3fwz_A 94 AKNPDIEIIAR-AHYDDE----VAYITERGANQVVMG 125 (140)
T ss_dssp HHCSSSEEEEE-ESSHHH----HHHHHHTTCSEEEEH
T ss_pred HHCCCCeEEEE-ECCHHH----HHHHHHCCCCEEECc
Confidence 34444334422 222333 344556777665433
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.06 E-value=2.9e-06 Score=75.37 Aligned_cols=84 Identities=17% Similarity=0.167 Sum_probs=63.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-----------------------------CCHHHHhhcCcEEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-----------------------------LSLSTLASGAEFII 52 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-----------------------------~s~~e~~~~adivi 52 (286)
||...++.+...|.+|++||+++++.+.+.+.|.... .+++++++++|+||
T Consensus 201 iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~~G~~~~~~~~~~~~d~~~~~~ya~e~s~~~~~~~~~~l~e~l~~aDVVI 280 (405)
T 4dio_A 201 AGLQAIATARRLGAVVSATDVRPAAKEQVASLGAKFIAVEDEEFKAAETAGGYAKEMSGEYQVKQAALVAEHIAKQDIVI 280 (405)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSTTHHHHHHHTTCEECCCCC-----------------CHHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCceeecccccccccccccchhhhcchhhhhhhHhHHHHHhcCCCEEE
Confidence 6899999999999999999999999888887776432 25678889999999
Q ss_pred EecCChhHHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 53 SMLPASQDVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 53 ~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.|+..|......+.. ++..+.+++|.+|||+|.
T Consensus 281 ~tvlipg~~ap~Lvt-~emv~~Mk~GsVIVDvA~ 313 (405)
T 4dio_A 281 TTALIPGRPAPRLVT-REMLDSMKPGSVVVDLAV 313 (405)
T ss_dssp ECCCCSSSCCCCCBC-HHHHTTSCTTCEEEETTG
T ss_pred ECCcCCCCCCCEEec-HHHHhcCCCCCEEEEEeC
Confidence 997433221122111 235666899999999974
|
| >3u62_A Shikimate dehydrogenase; shikimate pathway, oxidoreductase; 1.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.05 E-value=1.4e-06 Score=72.89 Aligned_cols=121 Identities=14% Similarity=0.077 Sum_probs=79.2
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc-cccCCCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI-LKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l-~~~l~~g 78 (286)
||.+++..|.+.|. +|++|||++++++.+.+. +....+++.++++++|+||.|+|..-.-.. . .+ .+.++++
T Consensus 119 ~a~ai~~~L~~~G~~~I~v~nR~~~ka~~la~~~~~~~~~~~~~~~~~aDiVInatp~gm~p~~--~---~i~~~~l~~~ 193 (253)
T 3u62_A 119 AARAVIYALLQMGVKDIWVVNRTIERAKALDFPVKIFSLDQLDEVVKKAKSLFNTTSVGMKGEE--L---PVSDDSLKNL 193 (253)
T ss_dssp HHHHHHHHHHHTTCCCEEEEESCHHHHHTCCSSCEEEEGGGHHHHHHTCSEEEECSSTTTTSCC--C---SCCHHHHTTC
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcccCCHHHHHhhhcCCCEEEECCCCCCCCCC--C---CCCHHHhCcC
Confidence 67899999999998 899999999998877543 323456778888999999999985311000 0 01 1235689
Q ss_pred CEEEEcCCCCchHHHHHHHHHHhcCCc-eEeccCCCCHHhhhcCc--eEEEecCCHhhHH
Q psy764 79 VIVIDSSTVDPQVPQTLSNLAREKQIT-FLDAPVSGGTKAAQEAT--LTFMVGGDKSSLE 135 (286)
Q Consensus 79 ~ivid~st~~p~~~~~~~~~~~~~g~~-~~~~pv~g~~~~a~~g~--l~~~~gg~~~~~~ 135 (286)
++|+|+... +. .+.+...++|++ .++ |.+....++. ..++.|-+++.++
T Consensus 194 ~~V~Divy~-~T---~ll~~A~~~G~~~~~~----Gl~MLv~Qa~~af~~wtg~~~~~~~ 245 (253)
T 3u62_A 194 SLVYDVIYF-DT---PLVVKARKLGVKHIIK----GNLMFYYQAMENLKIWGIYDEEVFK 245 (253)
T ss_dssp SEEEECSSS-CC---HHHHHHHHHTCSEEEC----THHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred CEEEEeeCC-Cc---HHHHHHHHCCCcEEEC----CHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 999999877 32 233445567877 665 4444333322 2345565665544
|
| >3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi} | Back alignment and structure |
|---|
Probab=98.04 E-value=6.9e-06 Score=59.75 Aligned_cols=90 Identities=19% Similarity=0.173 Sum_probs=63.5
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHcCCccc-------CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKEGANMA-------LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g~~~~-------~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..++..|.+.| ++|++++|++++.+.+...++... +++.++++++|+||.|+|.. ....+.. .
T Consensus 16 iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~------~ 88 (118)
T 3ic5_A 16 IGQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKALGGFDAVISAAPFF-LTPIIAK------A 88 (118)
T ss_dssp HHHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHTTTCSEEEECSCGG-GHHHHHH------H
T ss_pred HHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHHcCCCEEEECCCch-hhHHHHH------H
Confidence 7899999999999 999999999999888875553321 23456678899999999853 3344433 1
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHH
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLA 99 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~ 99 (286)
....|..++|.|+ .+...+++.+..
T Consensus 89 ~~~~g~~~~~~~~-~~~~~~~~~~~~ 113 (118)
T 3ic5_A 89 AKAAGAHYFDLTE-DVAATNAVRALV 113 (118)
T ss_dssp HHHTTCEEECCCS-CHHHHHHHHHHH
T ss_pred HHHhCCCEEEecC-cHHHHHHHHHHH
Confidence 2346778888765 444666665543
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=98.03 E-value=3.1e-06 Score=74.55 Aligned_cols=83 Identities=14% Similarity=0.165 Sum_probs=62.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccC-------------------------CHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMAL-------------------------SLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~-------------------------s~~e~~~~adivi~~v~ 56 (286)
||...++.+...|.+|++|||++++.+.+.+.|++... ++++.++++|+||.++.
T Consensus 195 iG~~aa~~a~~lGa~V~v~D~~~~~l~~~~~lGa~~~~l~~~~~~~~gya~~~~~~~~~~~~~~l~e~l~~aDIVI~tv~ 274 (381)
T 3p2y_A 195 AGLQALATAKRLGAKTTGYDVRPEVAEQVRSVGAQWLDLGIDAAGEGGYARELSEAERAQQQQALEDAITKFDIVITTAL 274 (381)
T ss_dssp HHHHHHHHHHHHTCEEEEECSSGGGHHHHHHTTCEECCCC-------------CHHHHHHHHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeccccccccccchhhhhHHHHhhhHHHHHHHHhcCCEEEECCC
Confidence 68899999999999999999999999988887765432 46788899999999974
Q ss_pred ChhH-HHHHhcCCccccccCCCCCEEEEcCC
Q psy764 57 ASQD-VLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 57 ~~~~-~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.|.. ...++. +...+.+++|.+|||++.
T Consensus 275 iPg~~ap~Lvt--~emv~~MkpGsVIVDvA~ 303 (381)
T 3p2y_A 275 VPGRPAPRLVT--AAAATGMQPGSVVVDLAG 303 (381)
T ss_dssp CTTSCCCCCBC--HHHHHTSCTTCEEEETTG
T ss_pred CCCcccceeec--HHHHhcCCCCcEEEEEeC
Confidence 3321 111221 135566889999999874
|
| >3hdj_A Probable ornithine cyclodeaminase; APC62486, bordetella pertussis TOH structural genomics, PSI-2, protein structure initiative; 1.70A {Bordetella pertussis} | Back alignment and structure |
|---|
Probab=98.01 E-value=3.5e-06 Score=72.72 Aligned_cols=95 Identities=16% Similarity=0.206 Sum_probs=68.1
Q ss_pred ccHHHHHHHHhC--CCcEEEEcCCchHHHHHHH-----cCC--cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ--GHDVIVYDKNTDASQTLAK-----EGA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~-----~g~--~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
||...++.|.+. ..+|.+|||+ +.+++.+ .|+ ..+ +++++++++|+||+|+|.. ..++. .
T Consensus 132 ~a~~~~~al~~~~~~~~V~v~~r~--~a~~la~~l~~~~g~~~~~~-~~~eav~~aDIVi~aT~s~---~pvl~-----~ 200 (313)
T 3hdj_A 132 QGAEHAAQLSARFALEAILVHDPY--ASPEILERIGRRCGVPARMA-APADIAAQADIVVTATRST---TPLFA-----G 200 (313)
T ss_dssp HHHHHHHHHHHHSCCCEEEEECTT--CCHHHHHHHHHHHTSCEEEC-CHHHHHHHCSEEEECCCCS---SCSSC-----G
T ss_pred HHHHHHHHHHHhCCCcEEEEECCc--HHHHHHHHHHHhcCCeEEEe-CHHHHHhhCCEEEEccCCC---CcccC-----H
Confidence 577788888763 4589999999 5555543 255 345 9999999999999999974 23332 2
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcC-CceEe
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQ-ITFLD 108 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g-~~~~~ 108 (286)
+.+++|++|+++++..|.. +++...+..+. ..|+|
T Consensus 201 ~~l~~G~~V~~vGs~~p~~-~El~~~~~~~a~~v~vD 236 (313)
T 3hdj_A 201 QALRAGAFVGAIGSSLPHT-RELDDEALRRARAVVVE 236 (313)
T ss_dssp GGCCTTCEEEECCCSSTTC-CCCCHHHHHHCSEEEES
T ss_pred HHcCCCcEEEECCCCCCch-hhcCHHHHhcCCEEEEC
Confidence 4578999999999998874 56555544444 35666
|
| >1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3 | Back alignment and structure |
|---|
Probab=97.95 E-value=5.9e-06 Score=74.99 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=69.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|...|.+|++||+++.+.......|+.. .++.+++++||+|+++..+. .++.. ..++.+++|.+|
T Consensus 268 IG~~vA~~l~~~G~~Viv~d~~~~~~~~a~~~g~~~-~~l~ell~~aDiVi~~~~t~----~lI~~--~~l~~MK~gail 340 (479)
T 1v8b_A 268 VGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNV----DVIKL--EHLLKMKNNAVV 340 (479)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSS----SSBCH--HHHTTCCTTCEE
T ss_pred HHHHHHHHHHhCcCEEEEEeCChhhHHHHHHcCCEe-cCHHHHHhcCCEEEECCChh----hhcCH--HHHhhcCCCcEE
Confidence 799999999999999999999998765555667754 58999999999999996432 22321 244568899999
Q ss_pred EEcCCCCc-hHHHHHHH
Q psy764 82 IDSSTVDP-QVPQTLSN 97 (286)
Q Consensus 82 id~st~~p-~~~~~~~~ 97 (286)
||+++..+ -....+.+
T Consensus 341 iNvgrg~~EId~~aL~~ 357 (479)
T 1v8b_A 341 GNIGHFDDEIQVNELFN 357 (479)
T ss_dssp EECSSTTTSBCHHHHHT
T ss_pred EEeCCCCccccchhhhc
Confidence 99999988 36666665
|
| >2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens} | Back alignment and structure |
|---|
Probab=97.95 E-value=4e-05 Score=66.51 Aligned_cols=104 Identities=12% Similarity=0.142 Sum_probs=75.6
Q ss_pred ccHHH-HHHHHhCCCcEE-EEcCCchHHHHHHHc-CCc-ccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLK-LFFLQFQGHDVI-VYDKNTDASQTLAKE-GAN-MALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~l-A~~L~~~G~~V~-~~dr~~~~~~~l~~~-g~~-~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||..+ +..|.+.+++|. ++|+++++.+.+.+. |+. .+++++++++ ++|+|++|+|+....+.+.. .+
T Consensus 11 ~g~~~~~~~l~~~~~~~vav~d~~~~~~~~~~~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~-------al 83 (332)
T 2glx_A 11 IAREWVIGAIRATGGEVVSMMSTSAERGAAYATENGIGKSVTSVEELVGDPDVDAVYVSTTNELHREQTLA-------AI 83 (332)
T ss_dssp HHHHTHHHHHHHTTCEEEEEECSCHHHHHHHHHHTTCSCCBSCHHHHHTCTTCCEEEECSCGGGHHHHHHH-------HH
T ss_pred HHHHhhhHHhhcCCCeEEEEECCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChhHhHHHHHH-------HH
Confidence 56666 777777778755 789999998887654 764 7889999987 49999999997655444432 24
Q ss_pred CCCC-EEEEc-CCCCchHHHHHHHHHHhcCCceEeccCC
Q psy764 76 KPGV-IVIDS-STVDPQVPQTLSNLAREKQITFLDAPVS 112 (286)
Q Consensus 76 ~~g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~~pv~ 112 (286)
..|+ ++++. .+.++.+.+++.+..++.|..+..++..
T Consensus 84 ~~Gk~v~~ekP~~~~~~~~~~l~~~a~~~g~~~~~~~~~ 122 (332)
T 2glx_A 84 RAGKHVLCEKPLAMTLEDAREMVVAAREAGVVLGTNHHL 122 (332)
T ss_dssp HTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEECCCG
T ss_pred HCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCEEEEeehh
Confidence 4566 55554 4667888889988888888877665443
|
| >3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=97.92 E-value=4.2e-05 Score=65.76 Aligned_cols=100 Identities=14% Similarity=0.132 Sum_probs=74.3
Q ss_pred ccHH-HHHHHHh-CCCcEE-EEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTL-KLFFLQF-QGHDVI-VYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~-lA~~L~~-~G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||.. ++..|.+ .++++. ++||++++++.+.+. |+..++++++++++.|+|++|+|+....+.+.. .+..
T Consensus 17 ~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~ll~~~D~V~i~tp~~~h~~~~~~-------al~~ 89 (308)
T 3uuw_A 17 IAQKAYLPILTKSERFEFVGAFTPNKVKREKICSDYRIMPFDSIESLAKKCDCIFLHSSTETHYEIIKI-------LLNL 89 (308)
T ss_dssp HHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHHHHTCCBCSCHHHHHTTCSEEEECCCGGGHHHHHHH-------HHHT
T ss_pred HHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHHhcCCEEEEeCCcHhHHHHHHH-------HHHC
Confidence 5654 6777766 356766 789999999888654 887789999999999999999998766555443 2344
Q ss_pred CC-EEEE-cCCCCchHHHHHHHHHHhcCCceEe
Q psy764 78 GV-IVID-SSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 78 g~-ivid-~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
|+ ++++ -.+.++.+.+++.+..+++|..+.-
T Consensus 90 gk~vl~EKP~~~~~~~~~~l~~~a~~~g~~~~v 122 (308)
T 3uuw_A 90 GVHVYVDKPLASTVSQGEELIELSTKKNLNLMV 122 (308)
T ss_dssp TCEEEECSSSSSSHHHHHHHHHHHHHHTCCEEE
T ss_pred CCcEEEcCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 55 4455 3567788899998888888876554
|
| >3o8q_A Shikimate 5-dehydrogenase I alpha; structural genomics, center for structural genomics of infec diseases, csgid; HET: EPE; 1.45A {Vibrio cholerae biovar el tor} PDB: 3sef_A* 3pgj_A* 3o8q_B* | Back alignment and structure |
|---|
Probab=97.92 E-value=6.4e-06 Score=69.99 Aligned_cols=101 Identities=18% Similarity=0.041 Sum_probs=68.6
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CC---cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GA---NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~---~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+|.+++..|.+.|. +|++|||++++.+.+.+. +. ....++.++..++|+||.|+|.....+..... ...++
T Consensus 137 ~g~aia~~L~~~G~~~v~v~~R~~~~a~~la~~~~~~~~~~~~~~~~l~~~aDiIInaTp~gm~~~~~~l~----~~~l~ 212 (281)
T 3o8q_A 137 AARGVLKPLLDQQPASITVTNRTFAKAEQLAELVAAYGEVKAQAFEQLKQSYDVIINSTSASLDGELPAID----PVIFS 212 (281)
T ss_dssp HHHHHHHHHHTTCCSEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCSCEEEEEECSCCCC----CSCC----GGGEE
T ss_pred HHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhccCCeeEeeHHHhcCCCCEEEEcCcCCCCCCCCCCC----HHHhC
Confidence 57899999999996 999999999998887654 21 12224555557899999999976432221111 12356
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCc-eEe
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQIT-FLD 108 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~-~~~ 108 (286)
++.+|+|+... |..+. +.+..+++|+. .++
T Consensus 213 ~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~ 243 (281)
T 3o8q_A 213 SRSVCYDMMYG-KGYTV-FNQWARQHGCAQAID 243 (281)
T ss_dssp EEEEEEESCCC-SSCCH-HHHHHHHTTCSEEEC
T ss_pred cCCEEEEecCC-CccCH-HHHHHHHCCCCEEEC
Confidence 78999999876 44444 33566778876 665
|
| >3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=97.90 E-value=4.9e-05 Score=66.39 Aligned_cols=100 Identities=14% Similarity=0.136 Sum_probs=76.6
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHHc-CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||..++..|.+. +++|. ++||++++++.+.+. |...+++++++++ +.|+|++|+|+....+.+.. .+.
T Consensus 15 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~-------al~ 87 (344)
T 3euw_A 15 IGHVHAANIAANPDLELVVIADPFIEGAQRLAEANGAEAVASPDEVFARDDIDGIVIGSPTSTHVDLITR-------AVE 87 (344)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHTTTCEEESSHHHHTTCSCCCEEEECSCGGGHHHHHHH-------HHH
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEEeCCchhhHHHHHH-------HHH
Confidence 678889999876 66765 789999999888655 8888999999998 89999999998766555443 233
Q ss_pred CC-CEEEEcC-CCCchHHHHHHHHHHhcCCceEe
Q psy764 77 PG-VIVIDSS-TVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 77 ~g-~ivid~s-t~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.| .++++.. +.++...+++.+..++.|..+..
T Consensus 88 ~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 121 (344)
T 3euw_A 88 RGIPALCEKPIDLDIEMVRACKEKIGDGASKVML 121 (344)
T ss_dssp TTCCEEECSCSCSCHHHHHHHHHHHGGGGGGEEE
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHhcCCeEEe
Confidence 44 4666654 67788889998888887765554
|
| >3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=7.7e-06 Score=74.49 Aligned_cols=87 Identities=15% Similarity=0.122 Sum_probs=67.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|...|.+|++|||++.+.......|... .+++++++++|+|++++.+. .++.. ..++.+++|.+|
T Consensus 288 IG~~vA~~l~~~G~~V~v~d~~~~~~~~a~~~G~~~-~~l~ell~~aDiVi~~~~t~----~lI~~--~~l~~MK~gAil 360 (494)
T 3d64_A 288 VGKGCAQSLRGLGATVWVTEIDPICALQAAMEGYRV-VTMEYAADKADIFVTATGNY----HVINH--DHMKAMRHNAIV 360 (494)
T ss_dssp HHHHHHHHHHTTTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECSSSS----CSBCH--HHHHHCCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHhHHHHHHcCCEe-CCHHHHHhcCCEEEECCCcc----cccCH--HHHhhCCCCcEE
Confidence 799999999999999999999998754444557665 47999999999999998543 22221 244568899999
Q ss_pred EEcCCCCch-HHHHH
Q psy764 82 IDSSTVDPQ-VPQTL 95 (286)
Q Consensus 82 id~st~~p~-~~~~~ 95 (286)
||++..... ....+
T Consensus 361 INvgrg~veID~~aL 375 (494)
T 3d64_A 361 CNIGHFDSEIDVAST 375 (494)
T ss_dssp EECSSSSCSBCCGGG
T ss_pred EEcCCCcchhchHHH
Confidence 999998773 44455
|
| >3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.89 E-value=2.1e-05 Score=68.48 Aligned_cols=111 Identities=17% Similarity=0.182 Sum_probs=83.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.+..-|.+|.+||+.+.. ...+.++. ..++.+++++||+|++++|-..+.+.++.. ..++.+++|.++
T Consensus 152 IG~~va~~~~~fg~~v~~~d~~~~~--~~~~~~~~-~~~l~ell~~sDivslh~Plt~~T~~li~~--~~l~~mk~~a~l 226 (334)
T 3kb6_A 152 IGSRVAMYGLAFGMKVLCYDVVKRE--DLKEKGCV-YTSLDELLKESDVISLHVPYTKETHHMINE--ERISLMKDGVYL 226 (334)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCH--HHHHTTCE-ECCHHHHHHHCSEEEECCCCCTTTTTCBCH--HHHHHSCTTEEE
T ss_pred HHHHHHHhhcccCceeeecCCccch--hhhhcCce-ecCHHHHHhhCCEEEEcCCCChhhccCcCH--HHHhhcCCCeEE
Confidence 7899999999999999999987643 33344554 458999999999999999987777777654 345678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHh
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKA 117 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~ 117 (286)
|++|-...-....+.+.+.+..+....--|+-.++.
T Consensus 227 IN~aRG~iVde~aL~~aL~~g~i~gA~LDV~~~EPl 262 (334)
T 3kb6_A 227 INTARGKVVDTDALYRAYQRGKFSGLGLDVFEDEEI 262 (334)
T ss_dssp EECSCGGGBCHHHHHHHHHTTCEEEEEESCCTTHHH
T ss_pred EecCccccccHHHHHHHHHhCCceEEEEeCCCCCCC
Confidence 999988877778888888765433222225555443
|
| >3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.88 E-value=7.3e-05 Score=56.34 Aligned_cols=97 Identities=15% Similarity=0.137 Sum_probs=62.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc----CCHHHH----hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA----LSLSTL----ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~e~----~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.++|++|.++|+++++++.+.+.|..+. .+...+ ++++|+||+++|++..-..+.. ...
T Consensus 17 iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~~~~~n~~~~~----~a~ 92 (141)
T 3llv_A 17 AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGSDDEFNLKILK----ALR 92 (141)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCSCHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecCCHHHHHHHHH----HHH
Confidence 6899999999999999999999999998887775421 122222 3579999999997544333332 223
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+....+++-.++ +... +.+.+.|+..+-
T Consensus 93 ~~~~~~iia~~~~--~~~~----~~l~~~G~~~vi 121 (141)
T 3llv_A 93 SVSDVYAIVRVSS--PKKK----EEFEEAGANLVV 121 (141)
T ss_dssp HHCCCCEEEEESC--GGGH----HHHHHTTCSEEE
T ss_pred HhCCceEEEEEcC--hhHH----HHHHHcCCCEEE
Confidence 3334456554433 3332 334556776543
|
| >4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.88 E-value=7.1e-05 Score=65.02 Aligned_cols=99 Identities=11% Similarity=0.189 Sum_probs=76.0
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHHc-CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||..++..|.+. +++|. ++|+++++.+.+.+. |+. +++++++++ +.|+|++|+|+....+.+.. .+.
T Consensus 14 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~-------al~ 85 (331)
T 4hkt_A 14 IGKVHAKAVSGNADARLVAVADAFPAAAEAIAGAYGCE-VRTIDAIEAAADIDAVVICTPTDTHADLIER-------FAR 85 (331)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCE-ECCHHHHHHCTTCCEEEECSCGGGHHHHHHH-------HHH
T ss_pred HHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHHHhCCC-cCCHHHHhcCCCCCEEEEeCCchhHHHHHHH-------HHH
Confidence 678888888875 67765 789999999888654 777 899999998 79999999998766555443 233
Q ss_pred CCC-EEEEcC-CCCchHHHHHHHHHHhcCCceEe
Q psy764 77 PGV-IVIDSS-TVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 77 ~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.|+ ++++.- +.++.+.+++.+..++.|..+.-
T Consensus 86 ~gk~v~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (331)
T 4hkt_A 86 AGKAIFCEKPIDLDAERVRACLKVVSDTKAKLMV 119 (331)
T ss_dssp TTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCcEEEecCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 454 555543 67888999999988888876654
|
| >3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=2.5e-05 Score=69.71 Aligned_cols=82 Identities=15% Similarity=0.147 Sum_probs=65.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|...|.+|++||+++.+.......|... .++.|+++++|+|+++..+.. ++.. ..++.+++|.+|
T Consensus 222 IG~~vA~~Lka~Ga~Viv~D~~p~~a~~A~~~G~~~-~sL~eal~~ADVVilt~gt~~----iI~~--e~l~~MK~gAIV 294 (436)
T 3h9u_A 222 VGKGCAAALRGFGARVVVTEVDPINALQAAMEGYQV-LLVEDVVEEAHIFVTTTGNDD----IITS--EHFPRMRDDAIV 294 (436)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCSC----SBCT--TTGGGCCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEECCChhhhHHHHHhCCee-cCHHHHHhhCCEEEECCCCcC----ccCH--HHHhhcCCCcEE
Confidence 799999999999999999999998776666677665 489999999999998766432 2321 245668999999
Q ss_pred EEcCCCCch
Q psy764 82 IDSSTVDPQ 90 (286)
Q Consensus 82 id~st~~p~ 90 (286)
|+++...++
T Consensus 295 INvgRg~vE 303 (436)
T 3h9u_A 295 CNIGHFDTE 303 (436)
T ss_dssp EECSSSGGG
T ss_pred EEeCCCCCc
Confidence 999877653
|
| >3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.0001 Score=64.05 Aligned_cols=101 Identities=17% Similarity=0.152 Sum_probs=77.3
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHHc-CC-cccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAKE-GA-NMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||..++..|.+. +++|. ++|+++++++.+.+. |+ ..+++++++++ +.|+|++|+|+....+.+.. .+
T Consensus 16 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~-------al 88 (330)
T 3e9m_A 16 IVPRFVAGLRESAQAEVRGIASRRLENAQKMAKELAIPVAYGSYEELCKDETIDIIYIPTYNQGHYSAAKL-------AL 88 (330)
T ss_dssp THHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHHHTTCCCCBSSHHHHHHCTTCSEEEECCCGGGHHHHHHH-------HH
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHcCCCceeCCHHHHhcCCCCCEEEEcCCCHHHHHHHHH-------HH
Confidence 788899999885 56765 789999999888655 76 57899999997 79999999998766555443 23
Q ss_pred CCCC-EEEEcC-CCCchHHHHHHHHHHhcCCceEec
Q psy764 76 KPGV-IVIDSS-TVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 76 ~~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
..|+ ++++.- +.++.+.+++.+..++.|..+..+
T Consensus 89 ~~gk~vl~EKP~~~~~~e~~~l~~~a~~~g~~~~v~ 124 (330)
T 3e9m_A 89 SQGKPVLLEKPFTLNAAEAEELFAIAQEQGVFLMEA 124 (330)
T ss_dssp HTTCCEEECSSCCSSHHHHHHHHHHHHHTTCCEEEC
T ss_pred HCCCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 3454 666654 677888999998888888766653
|
| >3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=8.5e-05 Score=65.15 Aligned_cols=101 Identities=15% Similarity=0.204 Sum_probs=76.7
Q ss_pred ccHHHHHHHHhC--CCcEE-EEcCCchHHHHHHHc-CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQ--GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||..++..|.+. +++|. ++|+++++++.+.+. |+..+++++++++ +.|+|++|+|+....+.+.. .+
T Consensus 24 ~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~-------al 96 (354)
T 3q2i_A 24 IANNHFGALEKHADRAELIDVCDIDPAALKAAVERTGARGHASLTDMLAQTDADIVILTTPSGLHPTQSIE-------CS 96 (354)
T ss_dssp THHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHHCCEEESCHHHHHHHCCCSEEEECSCGGGHHHHHHH-------HH
T ss_pred HHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHHHcCCceeCCHHHHhcCCCCCEEEECCCcHHHHHHHHH-------HH
Confidence 788899999887 67754 889999999888654 8888999999997 79999999998765554443 23
Q ss_pred CCCC-EEEEcC-CCCchHHHHHHHHHHhcCCceEec
Q psy764 76 KPGV-IVIDSS-TVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 76 ~~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
..|+ ++++.- +.++.+.+++.+..++.|..+.-+
T Consensus 97 ~~gk~v~~EKP~a~~~~~~~~l~~~a~~~g~~~~v~ 132 (354)
T 3q2i_A 97 EAGFHVMTEKPMATRWEDGLEMVKAADKAKKHLFVV 132 (354)
T ss_dssp HTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred HCCCCEEEeCCCcCCHHHHHHHHHHHHHhCCeEEEE
Confidence 4455 444433 567888889988888888766543
|
| >3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2} | Back alignment and structure |
|---|
Probab=97.85 E-value=8e-05 Score=65.32 Aligned_cols=100 Identities=15% Similarity=0.236 Sum_probs=76.6
Q ss_pred ccHHHHHHHHhC-CCcE-EEEcCCchHHHHHHHc-CCcccCCHHHHh--hcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQ-GHDV-IVYDKNTDASQTLAKE-GANMALSLSTLA--SGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~-g~~~~~s~~e~~--~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||..++..|.+. +++| .++|+++++.+.+.+. |+..++++++++ .+.|+|++|+|+....+.+.. .+.
T Consensus 16 ~g~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~-------al~ 88 (354)
T 3db2_A 16 WAYVMADAYTKSEKLKLVTCYSRTEDKREKFGKRYNCAGDATMEALLAREDVEMVIITVPNDKHAEVIEQ-------CAR 88 (354)
T ss_dssp HHHHHHHHHTTCSSEEEEEEECSSHHHHHHHHHHHTCCCCSSHHHHHHCSSCCEEEECSCTTSHHHHHHH-------HHH
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEEeCChHHHHHHHHH-------HHH
Confidence 678888888876 6775 4889999999888654 888899999999 569999999998766555543 233
Q ss_pred CCC-EEEEcC-CCCchHHHHHHHHHHhcCCceEe
Q psy764 77 PGV-IVIDSS-TVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 77 ~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.|+ ++++.- +.++.+.+++.+..+++|..+.-
T Consensus 89 ~gk~vl~EKP~~~~~~~~~~l~~~a~~~~~~~~v 122 (354)
T 3db2_A 89 SGKHIYVEKPISVSLDHAQRIDQVIKETGVKFLC 122 (354)
T ss_dssp TTCEEEEESSSCSSHHHHHHHHHHHHHHCCCEEE
T ss_pred cCCEEEEccCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 454 566653 67788899999888888876654
|
| >1hyh_A L-hicdh, L-2-hydroxyisocaproate dehydrogenase; L-2-hydroxycarboxylate dehydrogenase, L-lactate dehydrogenas oxidoreductase (CHOH(D)-NAD+(A)); HET: NAD; 2.20A {Weissella confusa} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.85 E-value=3.4e-05 Score=66.49 Aligned_cols=57 Identities=19% Similarity=0.187 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHHc----------CCcc-cCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAKE----------GANM-ALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~----------g~~~-~~s~~e~~~~adivi~~v~~~~ 59 (286)
||+++|..|+++| ++|.+|||++++++.+... .... ..++ ++++++|+||+|+|.+.
T Consensus 12 ~G~~la~~L~~~g~~~~V~l~d~~~~~~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~aDvViiav~~~~ 81 (309)
T 1hyh_A 12 VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDW-AALADADVVISTLGNIK 81 (309)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCG-GGGTTCSEEEECCSCGG
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHHHHhhhhhcCCCeEEEeCCH-HHhCCCCEEEEecCCcc
Confidence 7999999999999 7999999999888766431 1333 4566 77899999999999865
|
| >2d59_A Hypothetical protein PH1109; COA binding, structural genomics; 1.65A {Pyrococcus horikoshii} SCOP: c.2.1.8 PDB: 2d5a_A* 2e6u_X* 3qa9_A 3q9n_A* 3q9u_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=2.4e-05 Score=59.64 Aligned_cols=93 Identities=16% Similarity=0.194 Sum_probs=66.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..++++|.+.||+ +|++|+.+ +.+ .|..+..|++|+.+..|++++++|. ..+.+++.+ +.+. ..+.+|
T Consensus 37 ~G~~~~~~l~~~G~~--v~~Vnp~~-~~i--~G~~~y~sl~~l~~~vDlvvi~vp~-~~~~~vv~~---~~~~-gi~~i~ 106 (144)
T 2d59_A 37 DANIVMKYLLEHGYD--VYPVNPKY-EEV--LGRKCYPSVLDIPDKIEVVDLFVKP-KLTMEYVEQ---AIKK-GAKVVW 106 (144)
T ss_dssp HHHHHHHHHHHTTCE--EEEECTTC-SEE--TTEECBSSGGGCSSCCSEEEECSCH-HHHHHHHHH---HHHH-TCSEEE
T ss_pred hHHHHHHHHHHCCCE--EEEECCCC-CeE--CCeeccCCHHHcCCCCCEEEEEeCH-HHHHHHHHH---HHHc-CCCEEE
Confidence 577899999999997 56666553 112 4888899999999899999999996 567777653 3332 223455
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+..++. .+++.+.++++|++++.
T Consensus 107 ~~~g~~----~~~l~~~a~~~Gi~vvG 129 (144)
T 2d59_A 107 FQYNTY----NREASKKADEAGLIIVA 129 (144)
T ss_dssp ECTTCC----CHHHHHHHHHTTCEEEE
T ss_pred ECCCch----HHHHHHHHHHcCCEEEc
Confidence 543332 46777888888998874
|
| >3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum} | Back alignment and structure |
|---|
Probab=97.83 E-value=2.5e-05 Score=67.41 Aligned_cols=100 Identities=12% Similarity=0.115 Sum_probs=73.9
Q ss_pred ccHHHHHHHHhC-CCc-EEEEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQ-GHD-VIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||..++..|.+. +++ |.++|+++++.+.+.+. +..+++++++++ ++|+|++|+|+....+.+.. .+..
T Consensus 21 ~g~~~~~~l~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~-------al~~ 92 (315)
T 3c1a_A 21 WGKNYIRTIAGLPGAALVRLASSNPDNLALVPPG-CVIESDWRSVVSAPEVEAVIIATPPATHAEITLA-------AIAS 92 (315)
T ss_dssp TTTTHHHHHHHCTTEEEEEEEESCHHHHTTCCTT-CEEESSTHHHHTCTTCCEEEEESCGGGHHHHHHH-------HHHT
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHhh-CcccCCHHHHhhCCCCCEEEEeCChHHHHHHHHH-------HHHC
Confidence 788899999886 566 45889999987766554 667789999986 79999999997655444432 2445
Q ss_pred CC-EEEEc-CCCCchHHHHHHHHHHhcCCceEec
Q psy764 78 GV-IVIDS-STVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 78 g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
|+ ++++. .+.++...+++.+..++.|..+..+
T Consensus 93 Gk~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~ 126 (315)
T 3c1a_A 93 GKAVLVEKPLTLDLAEAEAVAAAAKATGVMVWVE 126 (315)
T ss_dssp TCEEEEESSSCSCHHHHHHHHHHHHHHCCCEEEE
T ss_pred CCcEEEcCCCcCCHHHHHHHHHHHHHcCCEEEEe
Confidence 65 56663 4667888889988888888766543
|
| >1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.82 E-value=9.7e-05 Score=63.80 Aligned_cols=101 Identities=17% Similarity=0.182 Sum_probs=74.3
Q ss_pred ccHH-HHHHHHhC-CCcEE-EEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTL-KLFFLQFQ-GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~-lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||.. ++..|.+. +++|. ++|+++++.+.+.+. |+..+++.+++..++|+|++|+|+....+.+.. .+..
T Consensus 16 ~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~~~~~g~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~-------al~~ 88 (319)
T 1tlt_A 16 IAQKAWLPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVST-------LLNA 88 (319)
T ss_dssp HHHHTHHHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHH-------HHHT
T ss_pred HHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCccCcHHHhhcCCCEEEEeCCchhHHHHHHH-------HHHc
Confidence 5664 67777663 66765 899999998887654 777788888876789999999998655554443 2445
Q ss_pred CC-EEEEc-CCCCchHHHHHHHHHHhcCCceEec
Q psy764 78 GV-IVIDS-STVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 78 g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
|+ ++++. .+.++.+.+++.+..++.|..+..+
T Consensus 89 G~~v~~eKP~~~~~~~~~~l~~~a~~~g~~~~~~ 122 (319)
T 1tlt_A 89 GVHVCVDKPLAENLRDAERLVELAARKKLTLMVG 122 (319)
T ss_dssp TCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCeEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEe
Confidence 66 66664 4667888899998888888776653
|
| >2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=4e-05 Score=58.92 Aligned_cols=65 Identities=17% Similarity=0.137 Sum_probs=48.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH-HcCCccc-C---CH---HHH-hhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA-KEGANMA-L---SL---STL-ASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~-~~g~~~~-~---s~---~e~-~~~adivi~~v~~~~~~~~v~~ 66 (286)
||+.+++.|.+.|++|+++||++++.+.+. ..|.... . +. .++ ++++|+||+|++++.....+..
T Consensus 30 iG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~g~~~~~~d~~~~~~l~~~~~~~ad~Vi~~~~~~~~~~~~~~ 103 (155)
T 2g1u_A 30 LGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDSTNFFISM 103 (155)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCGGGGGGSCTTCCSEEEESCTTSHHHHHTTTGGGCSEEEECSSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHhcCCCcEEEecCCCHHHHHHcCcccCCEEEEEeCCcHHHHHHHH
Confidence 689999999999999999999999887776 4564322 1 22 222 5689999999998765544443
|
| >3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.79 E-value=8.3e-05 Score=64.97 Aligned_cols=100 Identities=9% Similarity=0.114 Sum_probs=75.1
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHHc-CC-cccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAKE-GA-NMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||..++..|.+. +++|. ++|+++++++.+.+. |+ ..+++++++++ ++|+|++|+|+....+.+.. .+
T Consensus 13 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~-------al 85 (344)
T 3ezy_A 13 IGTIHAENLKMIDDAILYAISDVREDRLREMKEKLGVEKAYKDPHELIEDPNVDAVLVCSSTNTHSELVIA-------CA 85 (344)
T ss_dssp HHHHHHHHGGGSTTEEEEEEECSCHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHH-------HH
T ss_pred HHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHhCCCceeCCHHHHhcCCCCCEEEEcCCCcchHHHHHH-------HH
Confidence 677888888775 56655 789999998887654 65 47899999998 79999999998765554443 23
Q ss_pred CCCC-EEEEcC-CCCchHHHHHHHHHHhcCCceEe
Q psy764 76 KPGV-IVIDSS-TVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 76 ~~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
..|+ ++++.- +.++.+.+++.+..++.|..+.-
T Consensus 86 ~~gk~v~~EKP~~~~~~e~~~l~~~a~~~g~~~~v 120 (344)
T 3ezy_A 86 KAKKHVFCEKPLSLNLADVDRMIEETKKADVILFT 120 (344)
T ss_dssp HTTCEEEEESCSCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHHHHHhCCcEEE
Confidence 3454 566653 67888999999888888876554
|
| >2p2s_A Putative oxidoreductase; YP_050235.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.25A {Pectobacterium atrosepticum SCRI1043} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00012 Score=63.61 Aligned_cols=97 Identities=12% Similarity=0.086 Sum_probs=73.5
Q ss_pred HHHHHHHhCCCcE-EEEcCCchHHHHHHHc--CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 5 LKLFFLQFQGHDV-IVYDKNTDASQTLAKE--GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 5 ~lA~~L~~~G~~V-~~~dr~~~~~~~l~~~--g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
.++..|...|++| .++|+++++++.+.+. +...++|++++++ +.|+|++|+|+....+.+.. .+..|+
T Consensus 19 ~~~~~l~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~-------al~aGk 91 (336)
T 2p2s_A 19 DMCQQLIDAGAELAGVFESDSDNRAKFTSLFPSVPFAASAEQLITDASIDLIACAVIPCDRAELALR-------TLDAGK 91 (336)
T ss_dssp HHHHHHHHTTCEEEEEECSCTTSCHHHHHHSTTCCBCSCHHHHHTCTTCCEEEECSCGGGHHHHHHH-------HHHTTC
T ss_pred HhhhhhcCCCcEEEEEeCCCHHHHHHHHHhcCCCcccCCHHHHhhCCCCCEEEEeCChhhHHHHHHH-------HHHCCC
Confidence 4566676678885 6889999999888765 6788899999987 68999999998766555543 244566
Q ss_pred -EEEEc-CCCCchHHHHHHHHHHhcCCceEe
Q psy764 80 -IVIDS-STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 80 -ivid~-st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
++++. .+.++.+.+++.+..++.|..+.-
T Consensus 92 hVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 122 (336)
T 2p2s_A 92 DFFTAKPPLTTLEQLDAVQRRVAETGRKFAV 122 (336)
T ss_dssp EEEECSSCCSCHHHHHHHHHHHHHHCCCEEE
T ss_pred cEEEeCCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 66664 567788889998888887776553
|
| >1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=97.75 E-value=8.5e-05 Score=64.30 Aligned_cols=100 Identities=15% Similarity=0.135 Sum_probs=69.9
Q ss_pred ccH-HHHHHHHhC-CCcEEEEcCCchHHHHHHHc-CCcc-cCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 IST-LKLFFLQFQ-GHDVIVYDKNTDASQTLAKE-GANM-ALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~-~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~-g~~~-~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||. .++..|.+. +++|.++|+++++.+.+.+. |+.. ..+..+.+ .++|+|++|+|+....+.+.. .+.
T Consensus 13 ig~~~~~~~l~~~~~~~l~v~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~D~V~i~tp~~~h~~~~~~-------al~ 85 (323)
T 1xea_A 13 IAQKAYLPVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAF-------FLH 85 (323)
T ss_dssp HHHHTHHHHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHH-------HHH
T ss_pred HHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHcCCCccccCHHHHhhcCCCEEEEECCchhHHHHHHH-------HHH
Confidence 565 477777764 67777999999999888654 6653 44445555 689999999997654444432 234
Q ss_pred CCC-EEEEc-CCCCchHHHHHHHHHHhcCCceEe
Q psy764 77 PGV-IVIDS-STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 77 ~g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.|+ ++++. .+.++.+.+++.+..++.|..+..
T Consensus 86 ~Gk~V~~EKP~~~~~~~~~~l~~~a~~~g~~~~v 119 (323)
T 1xea_A 86 LGIPTFVDKPLAASAQECENLYELAEKHHQPLYV 119 (323)
T ss_dssp TTCCEEEESCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEeCCCcCCHHHHHHHHHHHHhcCCeEEE
Confidence 565 66664 466788888998888888876654
|
| >1npy_A Hypothetical shikimate 5-dehydrogenase-like protein HI0607; structural genomics, PSI, protein structure initiative; 1.75A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.75 E-value=2.6e-05 Score=65.86 Aligned_cols=101 Identities=13% Similarity=0.156 Sum_probs=69.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHH---HHhcCCcccc-ccC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVL---DAYDGSDGIL-KHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~---~v~~~~~~l~-~~l 75 (286)
+|.+++..|.+.|. +|++|||++++++.+.+. +....+++. ..++|+||.|+|.+.... +.. .+. ..+
T Consensus 130 aarav~~~L~~~G~~~i~v~nRt~~ka~~la~~~~~~~~~~~~--~~~~DivInaTp~gm~~~~~~~~~----~~~~~~l 203 (271)
T 1npy_A 130 MAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMDL----AFPKAFI 203 (271)
T ss_dssp THHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTSC----SSCHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCccchhhh--cccCCEEEECCCCCccCccccCCC----CCCHHHc
Confidence 57889999999997 899999999999888654 543332332 468999999999653211 011 011 234
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEecc
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAP 110 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~p 110 (286)
.++.+++|+.. .|..+ .+.+..+++|+.++++.
T Consensus 204 ~~~~~v~DlvY-~P~~T-~ll~~A~~~G~~~i~Gl 236 (271)
T 1npy_A 204 DNASVAFDVVA-MPVET-PFIRYAQARGKQTISGA 236 (271)
T ss_dssp HHCSEEEECCC-SSSSC-HHHHHHHHTTCEEECHH
T ss_pred CCCCEEEEeec-CCCCC-HHHHHHHHCCCEEECCH
Confidence 56899999986 45444 56667778898887644
|
| >3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00012 Score=64.31 Aligned_cols=100 Identities=13% Similarity=0.204 Sum_probs=75.0
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||...+..|.+. +++|. ++|+++++.+...+.|+..++|++++++ +.|+|++|+|+....+.+.. .+..
T Consensus 16 ~g~~~~~~l~~~~~~~l~av~d~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~-------al~a 88 (359)
T 3e18_A 16 MGSYHVTLASAADNLEVHGVFDILAEKREAAAQKGLKIYESYEAVLADEKVDAVLIATPNDSHKELAIS-------ALEA 88 (359)
T ss_dssp HHHHHHHHHHTSTTEEEEEEECSSHHHHHHHHTTTCCBCSCHHHHHHCTTCCEEEECSCGGGHHHHHHH-------HHHT
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHhcCCceeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH-------HHHC
Confidence 577788888776 56764 7799999987666668989999999997 78999999998766555543 2445
Q ss_pred CC-EEEEc-CCCCchHHHHHHHHHHhcCCceEe
Q psy764 78 GV-IVIDS-STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 78 g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
|+ ++++. -+.++.+.+++.+..++.|..+.-
T Consensus 89 GkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v 121 (359)
T 3e18_A 89 GKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMV 121 (359)
T ss_dssp TCEEEEESSCCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEeeCCCcCCHHHHHHHHHHHHHhCCeEEE
Confidence 65 55553 366788889998888888776543
|
| >3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00019 Score=62.62 Aligned_cols=101 Identities=11% Similarity=0.129 Sum_probs=73.6
Q ss_pred ccHHHHHHHH-h-CCCc-EEEEcCCchHHHHHHHc-CC-cccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQ-F-QGHD-VIVYDKNTDASQTLAKE-GA-NMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~-~-~G~~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
||..++..|. + .|++ |.++|+++++.+.+.+. |+ ..+++++++++ ++|+|++|+|+....+.+.. .
T Consensus 19 ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a~~~g~~~~~~~~~~~l~~~~~D~V~i~tp~~~h~~~~~~-------a 91 (346)
T 3cea_A 19 LGERHARHLVNKIQGVKLVAACALDSNQLEWAKNELGVETTYTNYKDMIDTENIDAIFIVAPTPFHPEMTIY-------A 91 (346)
T ss_dssp THHHHHHHHHHTCSSEEEEEEECSCHHHHHHHHHTTCCSEEESCHHHHHTTSCCSEEEECSCGGGHHHHHHH-------H
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCChHhHHHHHHH-------H
Confidence 7888888887 5 3667 46789999998887665 76 57889999986 69999999998665555443 2
Q ss_pred CCCCC-EEEEc-CCCCchHHHHHHHHHHhc-CCceEec
Q psy764 75 AKPGV-IVIDS-STVDPQVPQTLSNLAREK-QITFLDA 109 (286)
Q Consensus 75 l~~g~-ivid~-st~~p~~~~~~~~~~~~~-g~~~~~~ 109 (286)
+..|+ ++++. .+.++...+++.+...+. |..+..+
T Consensus 92 l~~G~~v~~eKp~~~~~~~~~~l~~~a~~~~~~~~~~~ 129 (346)
T 3cea_A 92 MNAGLNVFCEKPLGLDFNEVDEMAKVIKSHPNQIFQSG 129 (346)
T ss_dssp HHTTCEEEECSCCCSCHHHHHHHHHHHHTCTTSCEECC
T ss_pred HHCCCEEEEcCCCCCCHHHHHHHHHHHHhCCCCeEEEe
Confidence 44566 44553 355677888888887777 7766543
|
| >2b0j_A 5,10-methenyltetrahydromethanopterin hydrogenase; rossmann fold, helix bundle, oxidoreductase; 1.75A {Methanocaldococcus jannaschii} SCOP: a.100.1.11 c.2.1.6 PDB: 3f47_A* 3daf_A* 3dag_A* 3f46_A* 3h65_A* | Back alignment and structure |
|---|
Probab=97.68 E-value=0.0013 Score=54.74 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=83.6
Q ss_pred cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCce---Eec
Q psy764 33 EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITF---LDA 109 (286)
Q Consensus 33 ~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~---~~~ 109 (286)
.|+.++++-.|+++++|++|+-+|-......++.. ++++++.|.+|.+++|++|...-++-+.+.++.+.+ .++
T Consensus 127 aGVkVtsDD~EAvk~AEi~IlftPfG~~t~~Iakk---ii~~lpEgAII~nTCTipp~~ly~~le~l~R~DvgIsS~HPa 203 (358)
T 2b0j_A 127 VGLKVTSDDREAVEGADIVITWLPKGNKQPDIIKK---FADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPG 203 (358)
T ss_dssp GTCEEESCHHHHHTTCSEEEECCTTCTTHHHHHHH---HGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCS
T ss_pred cCcEeecchHHHhcCCCEEEEecCCCCCcHHHHHH---HHhhCcCCCEEecccCCCHHHHHHHHHHhCcccCCeeccCCC
Confidence 47899999999999999999999987756666664 888999999999999999988777766655444433 333
Q ss_pred cCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCCeEec
Q psy764 110 PVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRNIVHC 151 (286)
Q Consensus 110 pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~v~~~ 151 (286)
.|-|. .|. ++.--+ +++.++++.+|.++.++..|.+
T Consensus 204 aVPgt-----~Gq-~~~g~~yAtEEqIeklveLaksa~k~ay~v 241 (358)
T 2b0j_A 204 CVPEM-----KGQ-VYIAEGYASEEAVNKLYEIGKIARGKAFKM 241 (358)
T ss_dssp SCTTT-----CCC-EEEEESSSCHHHHHHHHHHHHHHHSCEEEE
T ss_pred CCCCC-----CCc-cccccccCCHHHHHHHHHHHHHhCCCeEec
Confidence 34443 444 222222 6889999999999999988765
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=6.4e-05 Score=68.60 Aligned_cols=81 Identities=14% Similarity=0.114 Sum_probs=65.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.+...|.+|++||+++++.+...+.|+.. .++.++++++|+||.|++++..+.. ..++.+++|.++
T Consensus 285 IG~~~A~~lka~Ga~Viv~d~~~~~~~~A~~~Ga~~-~~l~e~l~~aDvVi~atgt~~~i~~------~~l~~mk~ggil 357 (494)
T 3ce6_A 285 VGKGCAEAMKGQGARVSVTEIDPINALQAMMEGFDV-VTVEEAIGDADIVVTATGNKDIIML------EHIKAMKDHAIL 357 (494)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECSSSSCSBCH------HHHHHSCTTCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCEE-ecHHHHHhCCCEEEECCCCHHHHHH------HHHHhcCCCcEE
Confidence 789999999999999999999999888777788864 5788999999999999987542220 134557899999
Q ss_pred EEcCCCCc
Q psy764 82 IDSSTVDP 89 (286)
Q Consensus 82 id~st~~p 89 (286)
++++....
T Consensus 358 vnvG~~~~ 365 (494)
T 3ce6_A 358 GNIGHFDN 365 (494)
T ss_dssp EECSSSGG
T ss_pred EEeCCCCC
Confidence 99987654
|
| >2ewd_A Lactate dehydrogenase,; protein-substrate_cofactor analog complex, oxidoreductase; HET: A3D; 2.00A {Cryptosporidium parvum} PDB: 2frm_A 2fn7_A* 2fnz_A* 2fm3_A | Back alignment and structure |
|---|
Probab=97.63 E-value=5.2e-05 Score=65.58 Aligned_cols=82 Identities=17% Similarity=0.143 Sum_probs=58.2
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHH----H------c--CCcccCCHHHHhhcCcEEEEecCCh----------
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLA----K------E--GANMALSLSTLASGAEFIISMLPAS---------- 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~----~------~--g~~~~~s~~e~~~~adivi~~v~~~---------- 58 (286)
||+++|..|+++|+ +|.+||+++++++... . . .+..+.+. +++++||+||++++.+
T Consensus 15 ~G~~ia~~la~~g~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~-~a~~~aDiVi~avg~p~~~g~~r~d~ 93 (317)
T 2ewd_A 15 IGGNIAYIVGKDNLADVVLFDIAEGIPQGKALDITHSMVMFGSTSKVIGTDDY-ADISGSDVVIITASIPGRPKDDRSEL 93 (317)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCCCSSCCSSCGGGG
T ss_pred HHHHHHHHHHhCCCceEEEEeCCchHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHH
Confidence 79999999999999 9999999988766531 1 0 23334667 7889999999999432
Q ss_pred -----hHHHHHhcCCccccccCCCCCEEEEcCCCC
Q psy764 59 -----QDVLDAYDGSDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 59 -----~~~~~v~~~~~~l~~~l~~g~ivid~st~~ 88 (286)
..+++++.. +.+. .++.+++..|+..
T Consensus 94 ~~~~~~i~~~i~~~---i~~~-~~~~iii~~sNp~ 124 (317)
T 2ewd_A 94 LFGNARILDSVAEG---VKKY-CPNAFVICITNPL 124 (317)
T ss_dssp HHHHHHHHHHHHHH---HHHH-CTTSEEEECCSSH
T ss_pred HHhhHHHHHHHHHH---HHHH-CCCcEEEEeCChH
Confidence 234556553 4444 4678888877643
|
| >1p77_A Shikimate 5-dehydrogenase; NADPH, oxidoreductase; HET: ATR; 1.95A {Haemophilus influenzae} SCOP: c.2.1.7 c.58.1.5 PDB: 1p74_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.3e-05 Score=65.31 Aligned_cols=101 Identities=15% Similarity=0.179 Sum_probs=65.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CC--cc-cCCHHHHhh-cCcEEEEecCChhHHHHHhcCCcccc-ccC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GA--NM-ALSLSTLAS-GAEFIISMLPASQDVLDAYDGSDGIL-KHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~--~~-~~s~~e~~~-~adivi~~v~~~~~~~~v~~~~~~l~-~~l 75 (286)
+|.+++..|++.|++|++|||++++++.+.+. +. .. ..+++++.+ ++|+||.|+|.+... .+.. +- ..+
T Consensus 130 ~g~a~a~~L~~~G~~v~v~~R~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~DivIn~t~~~~~~-~~~~----i~~~~l 204 (272)
T 1p77_A 130 ATKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLSG-GTAS----VDAEIL 204 (272)
T ss_dssp HHHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--------C----CCHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHccccCCeEEeeHHHhccCCCCEEEECCCCCCCC-CCCC----CCHHHc
Confidence 67889999999999999999999998888643 21 11 123344434 899999999976431 2210 11 124
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCc-eEe
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQIT-FLD 108 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~-~~~ 108 (286)
.++.+++|+++.....+. +.+..+++|+. +++
T Consensus 205 ~~~~~v~D~~y~p~~~t~-ll~~a~~~G~~~~v~ 237 (272)
T 1p77_A 205 KLGSAFYDMQYAKGTDTP-FIALCKSLGLTNVSD 237 (272)
T ss_dssp HHCSCEEESCCCTTSCCH-HHHHHHHTTCCCEEC
T ss_pred CCCCEEEEeeCCCCcCCH-HHHHHHHcCCCEeeC
Confidence 578999999885444144 34566778877 665
|
| >2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=9.5e-05 Score=55.52 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=43.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc----CCHH---HH-hhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA----LSLS---TL-ASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~---e~-~~~adivi~~v~~~ 58 (286)
+|..++..|.+.|++|+++|+++++.+.+.+.+.... .+.. ++ ..++|+||.|++++
T Consensus 17 iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~ 81 (144)
T 2hmt_A 17 FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGAN 81 (144)
T ss_dssp HHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCc
Confidence 6899999999999999999999988877655554321 1222 22 56799999999975
|
| >3pwz_A Shikimate dehydrogenase 3; alpha-beta, oxidoreductase; 1.71A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00012 Score=61.79 Aligned_cols=101 Identities=12% Similarity=0.080 Sum_probs=67.2
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CC--cccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GA--NMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~--~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+|.+++..|.+.|. +|+++||++++++.+.+. +. ....+..++. .++|+||.|+|..-.-..... -.+.++
T Consensus 131 ~~~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~~~~~l~~~~~DivInaTp~gm~~~~~~i----~~~~l~ 206 (272)
T 3pwz_A 131 AVRGALLPFLQAGPSELVIANRDMAKALALRNELDHSRLRISRYEALEGQSFDIVVNATSASLTADLPPL----PADVLG 206 (272)
T ss_dssp HHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHCCTTEEEECSGGGTTCCCSEEEECSSGGGGTCCCCC----CGGGGT
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHhccCCeeEeeHHHhcccCCCEEEECCCCCCCCCCCCC----CHHHhC
Confidence 57889999999996 999999999999888654 21 1112333433 689999999996532110000 013467
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCc-eEe
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQIT-FLD 108 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~-~~~ 108 (286)
++.+|+|+... |..+. +.+..+++|+. .++
T Consensus 207 ~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~~ 237 (272)
T 3pwz_A 207 EAALAYELAYG-KGLTP-FLRLAREQGQARLAD 237 (272)
T ss_dssp TCSEEEESSCS-CCSCH-HHHHHHHHSCCEEEC
T ss_pred cCCEEEEeecC-CCCCH-HHHHHHHCCCCEEEC
Confidence 89999999776 54443 44566777876 554
|
| >3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00023 Score=62.36 Aligned_cols=100 Identities=17% Similarity=0.219 Sum_probs=75.1
Q ss_pred ccH-HHHHHHHhC-CCcEE-EEcCCchHHHHHHHc-CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 IST-LKLFFLQFQ-GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~-~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||. .++..|.+. +++|. ++||++++++.+.+. |+..+.+++++++ +.|+|++|+|+....+.+.. .+
T Consensus 38 ~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~-------al 110 (350)
T 3rc1_A 38 IAWRRALPALEAEPLTEVTAIASRRWDRAKRFTERFGGEPVEGYPALLERDDVDAVYVPLPAVLHAEWIDR-------AL 110 (350)
T ss_dssp HHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHHHHCSEEEESHHHHHTCTTCSEEEECCCGGGHHHHHHH-------HH
T ss_pred HHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHHHcCCCCcCCHHHHhcCCCCCEEEECCCcHHHHHHHHH-------HH
Confidence 455 577778776 66765 789999999888654 8888899999996 58999999998766555543 23
Q ss_pred CCCC-EEEEcC-CCCchHHHHHHHHHHhcCCceEe
Q psy764 76 KPGV-IVIDSS-TVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 76 ~~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
..|+ ++++.- +.++.+.+++.+..++.|..+..
T Consensus 111 ~aGk~Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~v 145 (350)
T 3rc1_A 111 RAGKHVLAEKPLTTDRPQAERLFAVARERGLLLME 145 (350)
T ss_dssp HTTCEEEEESSSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 4454 556643 67788999999888888876654
|
| >1nyt_A Shikimate 5-dehydrogenase; alpha/beta domains, WIDE cleft separation, oxidoreductase; HET: NAP; 1.50A {Escherichia coli} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.00021 Score=60.31 Aligned_cols=99 Identities=18% Similarity=0.149 Sum_probs=66.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CC--cc-cCCHHHHh-hcCcEEEEecCChhHHHHHhcCCcccc-ccC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GA--NM-ALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGIL-KHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~--~~-~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~-~~l 75 (286)
||.+++..|++.|.+|++|||++++.+.+.+. +. .. ..+.+++. .++|+||.|+|.+.. ..+. .+- ..+
T Consensus 130 ~g~a~a~~L~~~G~~V~v~~R~~~~~~~la~~~~~~~~~~~~~~~~~~~~~~DivVn~t~~~~~-~~~~----~i~~~~l 204 (271)
T 1nyt_A 130 ASRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDIP----AIPSSLI 204 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCCC----CCCGGGC
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHHhhccCCeeEecHHHhccCCCCEEEECCCCCCC-CCCC----CCCHHHc
Confidence 68999999999999999999999998887643 21 11 12333333 589999999997543 1111 121 235
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCc-eE
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQIT-FL 107 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~-~~ 107 (286)
+++.+++|+++. |..+. +.+..+++|+. .+
T Consensus 205 ~~~~~v~D~~y~-p~~t~-~~~~a~~~G~~~~~ 235 (271)
T 1nyt_A 205 HPGIYCYDMFYQ-KGKTP-FLAWCEQRGSKRNA 235 (271)
T ss_dssp CTTCEEEESCCC-SSCCH-HHHHHHHTTCCEEE
T ss_pred CCCCEEEEeccC-CcCCH-HHHHHHHcCCCeec
Confidence 688999999886 44443 44556777776 44
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=9.7e-05 Score=65.43 Aligned_cols=83 Identities=19% Similarity=0.243 Sum_probs=60.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-cCCcc------cCCHHHHhhcCcEEEEecCChhH-HHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-EGANM------ALSLSTLASGAEFIISMLPASQD-VLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-~g~~~------~~s~~e~~~~adivi~~v~~~~~-~~~v~~~~~~l~~ 73 (286)
||...++.+...|.+|++|||++++.+.+.+ .|... ..++.+.+.++|+||.|++.+.. ...++. ....+
T Consensus 179 iG~~~a~~a~~~Ga~V~~~d~~~~~l~~~~~~~g~~~~~~~~~~~~l~~~l~~aDvVi~~~~~p~~~t~~li~--~~~l~ 256 (377)
T 2vhw_A 179 AGYNAARIANGMGATVTVLDINIDKLRQLDAEFCGRIHTRYSSAYELEGAVKRADLVIGAVLVPGAKAPKLVS--NSLVA 256 (377)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSSEEEECCHHHHHHHHHHCSEEEECCCCTTSCCCCCBC--HHHHT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhcCCeeEeccCCHHHHHHHHcCCCEEEECCCcCCCCCcceec--HHHHh
Confidence 7899999999999999999999998887766 45542 23567788899999999976542 111111 11344
Q ss_pred cCCCCCEEEEcCC
Q psy764 74 HAKPGVIVIDSST 86 (286)
Q Consensus 74 ~l~~g~ivid~st 86 (286)
.+++|.+|||++.
T Consensus 257 ~mk~g~~iV~va~ 269 (377)
T 2vhw_A 257 HMKPGAVLVDIAI 269 (377)
T ss_dssp TSCTTCEEEEGGG
T ss_pred cCCCCcEEEEEec
Confidence 5788999999973
|
| >1a5z_A L-lactate dehydrogenase; oxidoreductase, glycolysis, hyperthermophiles, thermotoga MA protein stability; HET: FBP NAD; 2.10A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=97.57 E-value=8.4e-05 Score=64.30 Aligned_cols=80 Identities=20% Similarity=0.265 Sum_probs=55.3
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHc---------CCcc-cCCHHHHhhcCcEEEEecCChh----------
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKE---------GANM-ALSLSTLASGAEFIISMLPASQ---------- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~---------g~~~-~~s~~e~~~~adivi~~v~~~~---------- 59 (286)
||++++..|+++|+ +|.+||+++++++.+... ...+ ..+ .++++++|+||+|+|.+.
T Consensus 11 ~G~~la~~l~~~g~~~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~d-~~~~~~aDvViiav~~~~~~g~~r~dl~ 89 (319)
T 1a5z_A 11 VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGD-YADLKGSDVVIVAAGVPQKPGETRLQLL 89 (319)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECC-GGGGTTCSEEEECCCCCCCSSCCHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHHHHHhhhhhcCCcEEEeCC-HHHhCCCCEEEEccCCCCCCCCCHHHHH
Confidence 79999999999999 999999999887765421 1122 134 466789999999999654
Q ss_pred -----HHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 60 -----DVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 60 -----~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.++++... +.+. .++.++|..|+
T Consensus 90 ~~n~~i~~~i~~~---i~~~-~~~~~ii~~tN 117 (319)
T 1a5z_A 90 GRNARVMKEIARN---VSKY-APDSIVIVVTN 117 (319)
T ss_dssp HHHHHHHHHHHHH---HHHH-CTTCEEEECSS
T ss_pred HHHHHHHHHHHHH---HHhh-CCCeEEEEeCC
Confidence 13555543 4444 35666666544
|
| >3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00028 Score=61.61 Aligned_cols=98 Identities=10% Similarity=0.098 Sum_probs=73.9
Q ss_pred ccHHHHHHHH-h-CCCcEE-EEcCCchHHHHHHHc-C--CcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQ-F-QGHDVI-VYDKNTDASQTLAKE-G--ANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~-~-~G~~V~-~~dr~~~~~~~l~~~-g--~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..++..|. + .+++|. ++||++++.+.+.+. | ...++++++++++ .|+|++|+|+....+.+..
T Consensus 13 ~g~~~~~~l~~~~~~~~l~av~d~~~~~~~~~~~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~------- 85 (344)
T 3mz0_A 13 IGKEHINRITNKLSGAEIVAVTDVNQEAAQKVVEQYQLNATVYPNDDSLLADENVDAVLVTSWGPAHESSVLK------- 85 (344)
T ss_dssp HHHHHHHHHHHTCSSEEEEEEECSSHHHHHHHHHHTTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHH-------
T ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEECCCchhHHHHHHH-------
Confidence 6778888888 4 366755 789999999888654 6 6788999999976 8999999998766555543
Q ss_pred cCCCCC-EEEEcC-CCCchHHHHHHHHHHhcCCce
Q psy764 74 HAKPGV-IVIDSS-TVDPQVPQTLSNLAREKQITF 106 (286)
Q Consensus 74 ~l~~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~ 106 (286)
.+..|+ ++++.- +.++.+.+++.+..++.|..+
T Consensus 86 al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~~g~~~ 120 (344)
T 3mz0_A 86 AIKAQKYVFCEKPLATTAEGCMRIVEEEIKVGKRL 120 (344)
T ss_dssp HHHTTCEEEECSCSCSSHHHHHHHHHHHHHHSSCC
T ss_pred HHHCCCcEEEcCCCCCCHHHHHHHHHHHHHHCCEE
Confidence 244555 555543 667888889988888887755
|
| >3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00032 Score=61.55 Aligned_cols=98 Identities=15% Similarity=0.104 Sum_probs=73.5
Q ss_pred ccHHHHHHHH-h-CCCcEE-EEcCCchHHHHHHHc-C--CcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQ-F-QGHDVI-VYDKNTDASQTLAKE-G--ANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~-~-~G~~V~-~~dr~~~~~~~l~~~-g--~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||...+..|. + .+++|. ++|+++++++.+.+. | ...+++++++++ +.|+|++|+|+....+.+..
T Consensus 34 ~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~------- 106 (357)
T 3ec7_A 34 IGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALDKYAIEAKDYNDYHDLINDKDVEVVIITASNEAHADVAVA------- 106 (357)
T ss_dssp HHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHHHHTCCCEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHH-------
T ss_pred HHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhCCCCeeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH-------
Confidence 6778888888 4 366755 789999999888654 6 678899999997 48999999998766555543
Q ss_pred cCCCCC-EEEEcC-CCCchHHHHHHHHHHhcCCce
Q psy764 74 HAKPGV-IVIDSS-TVDPQVPQTLSNLAREKQITF 106 (286)
Q Consensus 74 ~l~~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~ 106 (286)
.+..|+ ++++.- +.++.+.+++.+..++.|..+
T Consensus 107 al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~ 141 (357)
T 3ec7_A 107 ALNANKYVFCEKPLAVTAADCQRVIEAEQKNGKRM 141 (357)
T ss_dssp HHHTTCEEEEESSSCSSHHHHHHHHHHHHHHTSCC
T ss_pred HHHCCCCEEeecCccCCHHHHHHHHHHHHHhCCeE
Confidence 234454 555543 667888899988888877654
|
| >1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00074 Score=59.30 Aligned_cols=101 Identities=14% Similarity=0.189 Sum_probs=74.2
Q ss_pred ccHHHHHHHHhC-CCcE-EEEcCCchHHHHHHHc-C----CcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ-GHDV-IVYDKNTDASQTLAKE-G----ANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~-g----~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
||..++..|.+. ++++ .++|+++++.+.+.+. | ...+.+++++++ +.|+|++|+|+....+.+..
T Consensus 17 ig~~~~~~l~~~~~~~lv~v~d~~~~~~~~~a~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~------ 90 (362)
T 1ydw_A 17 IARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIK------ 90 (362)
T ss_dssp THHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHH------
T ss_pred HHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCCCCeeeCCHHHHhcCCCCCEEEEcCChHHHHHHHHH------
Confidence 788888888875 4565 5789999998887654 5 356789999986 59999999997655444432
Q ss_pred ccCCCCC-EEEEc-CCCCchHHHHHHHHHHhcCCceEec
Q psy764 73 KHAKPGV-IVIDS-STVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 73 ~~l~~g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
.+..|+ ++++. .+.+..+.+++.+..++.|..+..+
T Consensus 91 -al~aGk~V~~EKP~a~~~~e~~~l~~~a~~~g~~~~~~ 128 (362)
T 1ydw_A 91 -AAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIMDG 128 (362)
T ss_dssp -HHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEEEC
T ss_pred -HHHCCCeEEEecCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 345666 44543 3567788889998888888877654
|
| >1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=7.8e-05 Score=65.49 Aligned_cols=97 Identities=12% Similarity=0.144 Sum_probs=66.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhh-cCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLAS-GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~-~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+|++|.+.|++|+++|+++++++++.+. |+... +..++.. +||+++.|... .++... ..+.+ ..+
T Consensus 184 VG~~~A~~L~~~GakVvv~D~~~~~l~~~a~~~ga~~v-~~~~ll~~~~DIvip~a~~-----~~I~~~--~~~~l-g~~ 254 (364)
T 1leh_A 184 VAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAV-APNAIYGVTCDIFAPCALG-----AVLNDF--TIPQL-KAK 254 (364)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEEC-CGGGTTTCCCSEEEECSCS-----CCBSTT--HHHHC-CCS
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHcCCEEE-ChHHHhccCCcEeeccchH-----HHhCHH--HHHhC-CCc
Confidence 79999999999999999999999998877654 76555 3445544 89999988532 233221 22334 334
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+|+ .++..|.+..+..+.+.++|+.|++
T Consensus 255 iV~-e~An~p~t~~ea~~~L~~~Gi~~~P 282 (364)
T 1leh_A 255 VIA-GSADNQLKDPRHGKYLHELGIVYAP 282 (364)
T ss_dssp EEC-CSCSCCBSSHHHHHHHHHHTCEECC
T ss_pred EEE-eCCCCCcccHHHHHHHHhCCCEEec
Confidence 444 4556666655667778888987764
|
| >3ohs_X Trans-1,2-dihydrobenzene-1,2-DIOL dehydrogenase; dimeric dihydrodiol dehydrogenase, MDD, oxidoreductase; 1.90A {Macaca fascicularis} PDB: 2o48_X 2poq_X* 2o4u_X | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00068 Score=58.83 Aligned_cols=100 Identities=17% Similarity=0.141 Sum_probs=73.4
Q ss_pred ccHHHHHHHHhCC---Cc-EEEEcCCchHHHHHHHc-CC-cccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQG---HD-VIVYDKNTDASQTLAKE-GA-NMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G---~~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||..++..|.+.+ ++ |.++||++++++.+.+. |+ ..++|++++++ +.|+|++|+|+....+.+..
T Consensus 13 ig~~~~~~l~~~~~~~~~l~av~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~------- 85 (334)
T 3ohs_X 13 ISSDFTAVLQTLPRSEHQVVAVAARDLSRAKEFAQKHDIPKAYGSYEELAKDPNVEVAYVGTQHPQHKAAVML------- 85 (334)
T ss_dssp HHHHHHHHHTTSCTTTEEEEEEECSSHHHHHHHHHHHTCSCEESSHHHHHHCTTCCEEEECCCGGGHHHHHHH-------
T ss_pred HHHHHHHHHHhCCCCCeEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHH-------
Confidence 5667777777654 23 56789999999888654 76 57899999997 69999999998766555443
Q ss_pred cCCCCC-EEEEc-CCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKPGV-IVIDS-STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+..|+ ++++. -+.++.+.+++.+..+++|..+..
T Consensus 86 al~~GkhVl~EKP~a~~~~e~~~l~~~a~~~~~~~~v 122 (334)
T 3ohs_X 86 CLAAGKAVLCEKPMGVNAAEVREMVTEARSRGLFLME 122 (334)
T ss_dssp HHHTTCEEEEESSSSSSHHHHHHHHHHHHHTTCCEEE
T ss_pred HHhcCCEEEEECCCCCCHHHHHHHHHHHHHhCCEEEE
Confidence 234555 55664 366788889998888888876554
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00012 Score=64.76 Aligned_cols=83 Identities=17% Similarity=0.211 Sum_probs=57.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-cCCcc------cCCHHHHhhcCcEEEEecCChhH-HHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-EGANM------ALSLSTLASGAEFIISMLPASQD-VLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-~g~~~------~~s~~e~~~~adivi~~v~~~~~-~~~v~~~~~~l~~ 73 (286)
||..+++.+...|++|+++||++++.+.+.+ .|... ..++.++++++|+||.|++.+.. ...++. ....+
T Consensus 177 iG~~~a~~l~~~Ga~V~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~DvVi~~~g~~~~~~~~li~--~~~l~ 254 (369)
T 2eez_A 177 VGTNAAKIALGMGAQVTILDVNHKRLQYLDDVFGGRVITLTATEANIKKSVQHADLLIGAVLVPGAKAPKLVT--RDMLS 254 (369)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTTSEEEEECCHHHHHHHHHHCSEEEECCC-------CCSC--HHHHT
T ss_pred HHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCceEEEecCCHHHHHHHHhCCCEEEECCCCCccccchhHH--HHHHH
Confidence 7899999999999999999999998877765 45432 23466778899999999986531 111111 11345
Q ss_pred cCCCCCEEEEcCC
Q psy764 74 HAKPGVIVIDSST 86 (286)
Q Consensus 74 ~l~~g~ivid~st 86 (286)
.+++|.+|||++.
T Consensus 255 ~mk~gg~iV~v~~ 267 (369)
T 2eez_A 255 LMKEGAVIVDVAV 267 (369)
T ss_dssp TSCTTCEEEECC-
T ss_pred hhcCCCEEEEEec
Confidence 5778899999884
|
| >3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.00039 Score=60.28 Aligned_cols=103 Identities=14% Similarity=0.153 Sum_probs=73.7
Q ss_pred ccHHHHHHHHhCC-Cc-EEEEcCCchHHHHHHHc-CCc-ccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQG-HD-VIVYDKNTDASQTLAKE-GAN-MALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~-V~~~dr~~~~~~~l~~~-g~~-~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||..++..|.+.+ .+ +.++||++++++.+.+. |+. .+.+++++++ +.|+|++|+|+....+.+.. .+
T Consensus 16 ig~~~~~~l~~~~~~~~~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~-------al 88 (329)
T 3evn_A 16 VAPRFIEGVRLAGNGEVVAVSSRTLESAQAFANKYHLPKAYDKLEDMLADESIDVIYVATINQDHYKVAKA-------AL 88 (329)
T ss_dssp THHHHHHHHHHHCSEEEEEEECSCSSTTCC---CCCCSCEESCHHHHHTCTTCCEEEECSCGGGHHHHHHH-------HH
T ss_pred HHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEECCCcHHHHHHHHH-------HH
Confidence 6788888887654 45 45789999998877655 664 7889999998 79999999998765555443 23
Q ss_pred CCCC-EEEEcC-CCCchHHHHHHHHHHhcCCceEeccC
Q psy764 76 KPGV-IVIDSS-TVDPQVPQTLSNLAREKQITFLDAPV 111 (286)
Q Consensus 76 ~~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~~pv 111 (286)
..|+ ++++.- +.++.+.+++.+..++.|..+..+..
T Consensus 89 ~aGk~Vl~EKP~a~~~~e~~~l~~~a~~~~~~~~v~~~ 126 (329)
T 3evn_A 89 LAGKHVLVEKPFTLTYDQANELFALAESCNLFLMEAQK 126 (329)
T ss_dssp HTTCEEEEESSCCSSHHHHHHHHHHHHHTTCCEEEECS
T ss_pred HCCCeEEEccCCcCCHHHHHHHHHHHHHcCCEEEEEEc
Confidence 4555 555543 66788889998888888877665443
|
| >1guz_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle, NAD; HET: NAD; 2.0A {Chlorobium vibrioforme} SCOP: c.2.1.5 d.162.1.1 PDB: 1gv1_A 1gv0_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00045 Score=59.46 Aligned_cols=56 Identities=13% Similarity=0.159 Sum_probs=43.6
Q ss_pred ccHHHHHHHHhC--CCcEEEEcCCchHHHHHHH---cC---------CcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQ--GHDVIVYDKNTDASQTLAK---EG---------ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~---~g---------~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||+++|..|+++ |++|.+||+++++++.+.. .+ +..+.++++ +++||+||+++|.|
T Consensus 11 vG~~la~~la~~~~g~~V~l~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~~-l~~aDvViiav~~p 80 (310)
T 1guz_A 11 VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYAD-TANSDIVIITAGLP 80 (310)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGG-GTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHhHHhhhhcccCCcEEEECCCHHH-HCCCCEEEEeCCCC
Confidence 789999999985 7999999999988765431 11 233466766 89999999999865
|
| >1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00034 Score=63.14 Aligned_cols=101 Identities=14% Similarity=0.109 Sum_probs=72.5
Q ss_pred ccH-HHHHHHHhC-CCcE-EEEcCCchHHHHHHHc-CCc-----ccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 IST-LKLFFLQFQ-GHDV-IVYDKNTDASQTLAKE-GAN-----MALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~-~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~-g~~-----~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||. .++..|.+. +++| .++|+++++.+.+.+. |+. .+.+++++++ +.|+|++|+|+....+.+..
T Consensus 94 ~g~~~~~~~l~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~~~ll~~~~vD~V~iatp~~~h~~~~~~---- 169 (433)
T 1h6d_A 94 YALNQILPGFAGCQHSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIR---- 169 (433)
T ss_dssp HHHHTHHHHTTTCSSEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHH----
T ss_pred HHHHHHHHHHhhCCCcEEEEEEcCCHHHHHHHHHHhCCCcccccccCCHHHHhcCCCCCEEEEcCCchhHHHHHHH----
Confidence 454 566777665 4564 6889999998887654 654 5789999987 79999999998765555443
Q ss_pred ccccCCCCC-EEEEc-CCCCchHHHHHHHHHHhcCCceEec
Q psy764 71 ILKHAKPGV-IVIDS-STVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 71 l~~~l~~g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
.+..|+ ++++. .+.+..+.+++.+..+++|..+..+
T Consensus 170 ---al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v~ 207 (433)
T 1h6d_A 170 ---AFKAGKHVMCEKPMATSVADCQRMIDAAKAANKKLMIG 207 (433)
T ss_dssp ---HHHTTCEEEECSSCCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred ---HHHCCCcEEEcCCCCCCHHHHHHHHHHHHHhCCeEEEE
Confidence 244565 55654 4567888888988888888776654
|
| >3btv_A Galactose/lactose metabolism regulatory protein GAL80; eukaryotic transcription repressor, acetylation, carbohydrate metabolism; 2.10A {Saccharomyces cerevisiae} PDB: 3bts_A 3v2u_A* 3btu_A | Back alignment and structure |
|---|
Probab=97.39 E-value=0.00034 Score=63.21 Aligned_cols=100 Identities=8% Similarity=0.071 Sum_probs=74.6
Q ss_pred ccHHHHHHHHhC--CCcE-EEEcCCchHHHHHHHc-CCc---ccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ--GHDV-IVYDKNTDASQTLAKE-GAN---MALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V-~~~dr~~~~~~~l~~~-g~~---~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
||...+..|.+. +++| .++|+++++.+.+.+. |+. .+.+++++++ +.|+|++|+|+....+.+..
T Consensus 35 ~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~g~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~------ 108 (438)
T 3btv_A 35 AIKTHYPAILQLSSQFQITALYSPKIETSIATIQRLKLSNATAFPTLESFASSSTIDMIVIAIQVASHYEVVMP------ 108 (438)
T ss_dssp TTTTHHHHHHHTTTTEEEEEEECSSHHHHHHHHHHTTCTTCEEESSHHHHHHCSSCSEEEECSCHHHHHHHHHH------
T ss_pred HHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEeCCcHHHHHHHHH------
Confidence 567788888876 6665 6889999998888655 664 7889999987 58999999997766555543
Q ss_pred ccCCCC-------CEEEEc-CCCCchHHHHHHHHHHhcCCceEe
Q psy764 73 KHAKPG-------VIVIDS-STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 73 ~~l~~g-------~ivid~-st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+..| .++++. .+.++.+.+++.+..++.|..+..
T Consensus 109 -al~aG~~~~~~khVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 151 (438)
T 3btv_A 109 -LLEFSKNNPNLKYLFVEWALACSLDQAESIYKAAAERGVQTII 151 (438)
T ss_dssp -HHHHGGGCTTCCEEEEESSCCSSHHHHHHHHHHHHTTTCEEEE
T ss_pred -HHHCCCCcccceeEEecCcccCCHHHHHHHHHHHHHcCCeEEE
Confidence 12334 577774 466788889998888887766554
|
| >2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0004 Score=63.48 Aligned_cols=100 Identities=9% Similarity=0.141 Sum_probs=73.3
Q ss_pred ccHHHHHHHHhC--CCcE-EEEcCCchHHHHHHHc-CCc---ccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ--GHDV-IVYDKNTDASQTLAKE-GAN---MALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V-~~~dr~~~~~~~l~~~-g~~---~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
||...+..|.+. +++| .++|+++++++.+.+. |+. .+.|++++++ +.|+|++|+|+....+.+..
T Consensus 54 ~g~~h~~~l~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~~~~~d~~ell~~~~vD~V~I~tp~~~H~~~~~~------ 127 (479)
T 2nvw_A 54 VAKTHFLAIQQLSSQFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKN------ 127 (479)
T ss_dssp HHHTHHHHHHHTTTTEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHH------
T ss_pred HHHHHHHHHHhcCCCeEEEEEEeCCHHHHHHHHHHcCCCcceeeCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH------
Confidence 355667778775 6665 5889999999888665 664 7899999996 68999999998766555543
Q ss_pred ccCCCC-------CEEEEc-CCCCchHHHHHHHHHHhcC-CceEe
Q psy764 73 KHAKPG-------VIVIDS-STVDPQVPQTLSNLAREKQ-ITFLD 108 (286)
Q Consensus 73 ~~l~~g-------~ivid~-st~~p~~~~~~~~~~~~~g-~~~~~ 108 (286)
.+..| .++++. .+.++.+++++.+..++.| ..+.-
T Consensus 128 -al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~g~~~~~v 171 (479)
T 2nvw_A 128 -ILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQRANLQTII 171 (479)
T ss_dssp -HHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTCTTCEEEE
T ss_pred -HHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEEE
Confidence 23344 477776 4677888899988887777 65443
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.00012 Score=65.38 Aligned_cols=83 Identities=12% Similarity=0.171 Sum_probs=59.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccC---------------------------CHHHHhhcCcEEEEe
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMAL---------------------------SLSTLASGAEFIISM 54 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~---------------------------s~~e~~~~adivi~~ 54 (286)
||...++.+...|.+|+++|+++++.+.+.+.|..... ++.+.+.++|+||.|
T Consensus 183 iG~~aa~~a~~~Ga~V~v~D~~~~~~~~~~~lGa~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~e~~~~aDvVI~~ 262 (401)
T 1x13_A 183 AGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMGAEFLELDFKEEAGSGDGYAKVMSDAFIKAEMELFAAQAKEVDIIVTT 262 (401)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCGGGHHHHHHTTCEECCC--------CCHHHHHHSHHHHHHHHHHHHHHHHHCSEEEEC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHcCCEEEEecccccccccccchhhccHHHHHHHHHHHHHHhCCCCEEEEC
Confidence 68889999999999999999999998888777866442 356778899999999
Q ss_pred cCChh-HHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 55 LPASQ-DVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 55 v~~~~-~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
+..|. ....++. ...++.+++|.+|||++.
T Consensus 263 ~~~pg~~ap~li~--~~~l~~mk~g~vIVdva~ 293 (401)
T 1x13_A 263 ALIPGKPAPKLIT--REMVDSMKAGSVIVDLAA 293 (401)
T ss_dssp CCCTTSCCCCCBC--HHHHHTSCTTCEEEETTG
T ss_pred CccCCCCCCeeeC--HHHHhcCCCCcEEEEEcC
Confidence 43221 1111111 013345788999999875
|
| >2hjr_A Malate dehydrogenase; malaria, structural genomics, structural genomics consortium, SGC, oxidoreductase; HET: CIT APR; 2.20A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0004 Score=60.25 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=55.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHH----H-------c-CCcccCCHHHHhhcCcEEEEecCChh---------
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLA----K-------E-GANMALSLSTLASGAEFIISMLPASQ--------- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~----~-------~-g~~~~~s~~e~~~~adivi~~v~~~~--------- 59 (286)
||+++|..|+.+|+ +|.+||+++++++... . . .+..+.+. +++++||+||++++.|.
T Consensus 25 vG~~iA~~la~~g~~~V~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~VI~avg~p~k~g~tr~dl 103 (328)
T 2hjr_A 25 IGSTIALLLGQKDLGDVYMFDIIEGVPQGKALDLNHCMALIGSPAKIFGENNY-EYLQNSDVVIITAGVPRKPNMTRSDL 103 (328)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCCCTTCCSGGG
T ss_pred HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhHhhccCCCCEEEECCCH-HHHCCCCEEEEcCCCCCCCCCchhhH
Confidence 79999999999999 9999999998776421 1 0 23444677 78899999999995442
Q ss_pred ------HHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 60 ------DVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 60 ------~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.++++... +.+.. ++.+++..|+
T Consensus 104 ~~~n~~i~~~i~~~---i~~~~-p~a~viv~tN 132 (328)
T 2hjr_A 104 LTVNAKIVGSVAEN---VGKYC-PNAFVICITN 132 (328)
T ss_dssp HHHHHHHHHHHHHH---HHHHC-TTCEEEECCS
T ss_pred HhhhHHHHHHHHHH---HHHHC-CCeEEEEecC
Confidence 24445443 44433 6667766654
|
| >3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00032 Score=62.75 Aligned_cols=81 Identities=17% Similarity=0.141 Sum_probs=62.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.+...|.+|+++|+++.+.......|... .++.++++++|+|+++.++.. ++.. ..++.+++|.++
T Consensus 258 IGr~vA~~lrafGa~Viv~d~dp~~a~~A~~~G~~v-v~LeElL~~ADIVv~atgt~~----lI~~--e~l~~MK~GAIL 330 (464)
T 3n58_A 258 VGKGSAQSLAGAGARVKVTEVDPICALQAAMDGFEV-VTLDDAASTADIVVTTTGNKD----VITI--DHMRKMKDMCIV 330 (464)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEE-CCHHHHGGGCSEEEECCSSSS----SBCH--HHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcchhhHHHhcCcee-ccHHHHHhhCCEEEECCCCcc----ccCH--HHHhcCCCCeEE
Confidence 789999999999999999999988765555667765 479999999999999876532 2211 134557899999
Q ss_pred EEcCCCCc
Q psy764 82 IDSSTVDP 89 (286)
Q Consensus 82 id~st~~p 89 (286)
|+++-...
T Consensus 331 INvGRgdv 338 (464)
T 3n58_A 331 GNIGHFDN 338 (464)
T ss_dssp EECSSSTT
T ss_pred EEcCCCCc
Confidence 99987654
|
| >3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum} | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00039 Score=61.07 Aligned_cols=99 Identities=10% Similarity=0.076 Sum_probs=70.3
Q ss_pred ccH-HHHHHHHhC-CCcEE-EEcCCchHHHHHHHc--CCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 IST-LKLFFLQFQ-GHDVI-VYDKNTDASQTLAKE--GANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~-~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~--g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
||. .++..|.+. +.+|. ++||++++++.+.+. +...++|+++++++ .|+|++|+|+....+.+.. .
T Consensus 16 ~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~-------a 88 (359)
T 3m2t_A 16 QMQENLLPSLLQMQDIRIVAACDSDLERARRVHRFISDIPVLDNVPAMLNQVPLDAVVMAGPPQLHFEMGLL-------A 88 (359)
T ss_dssp HHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGGGTSCSCCEESSHHHHHHHSCCSEEEECSCHHHHHHHHHH-------H
T ss_pred HHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHHHhcCCCcccCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH-------H
Confidence 344 366777665 56765 889999998888765 56788999999985 4999999997655554443 2
Q ss_pred CCCCC-EEEEcC-CCCchHHHHHHHHHHhcCCceE
Q psy764 75 AKPGV-IVIDSS-TVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 75 l~~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~ 107 (286)
+..|+ ++++.- +.++.+.+++.+..++.|..+.
T Consensus 89 l~aGkhVl~EKPla~~~~e~~~l~~~a~~~g~~~~ 123 (359)
T 3m2t_A 89 MSKGVNVFVEKPPCATLEELETLIDAARRSDVVSG 123 (359)
T ss_dssp HHTTCEEEECSCSCSSHHHHHHHHHHHHHHTCCEE
T ss_pred HHCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEE
Confidence 44565 455532 5677888888888887776544
|
| >3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A* | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00031 Score=62.57 Aligned_cols=82 Identities=13% Similarity=0.148 Sum_probs=62.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|...|.+|+++|+++.+.......|... .++.++++++|+|++|..+. .++.. ..++.+++|.+|
T Consensus 231 IGk~vA~~Lra~Ga~Viv~D~dp~ra~~A~~~G~~v-~~Leeal~~ADIVi~atgt~----~lI~~--e~l~~MK~gail 303 (435)
T 3gvp_A 231 VGKGCCAALKAMGSIVYVTEIDPICALQACMDGFRL-VKLNEVIRQVDIVITCTGNK----NVVTR--EHLDRMKNSCIV 303 (435)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCHHHHTTTCSEEEECSSCS----CSBCH--HHHHHSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhhhHHHHHcCCEe-ccHHHHHhcCCEEEECCCCc----ccCCH--HHHHhcCCCcEE
Confidence 789999999999999999999998766666667654 57999999999999974332 22221 134457899999
Q ss_pred EEcCCCCch
Q psy764 82 IDSSTVDPQ 90 (286)
Q Consensus 82 id~st~~p~ 90 (286)
|+++...++
T Consensus 304 INvgrg~~E 312 (435)
T 3gvp_A 304 CNMGHSNTE 312 (435)
T ss_dssp EECSSTTTT
T ss_pred EEecCCCcc
Confidence 999877653
|
| >4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00044 Score=61.05 Aligned_cols=101 Identities=16% Similarity=0.200 Sum_probs=69.1
Q ss_pred cHHHHHHHHhC--CCcEE-EEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHH---HHHhcCCccccccC
Q psy764 3 STLKLFFLQFQ--GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDV---LDAYDGSDGILKHA 75 (286)
Q Consensus 3 G~~lA~~L~~~--G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~---~~v~~~~~~l~~~l 75 (286)
|...+..+.+. ++++. ++||++++.+++.+. |+..++|+++++++.|++++|+|++... .++. ...+
T Consensus 18 g~~h~~a~~~~~~~~elvav~~~~~~~a~~~a~~~gv~~~~~~~~l~~~~D~v~i~~p~~~h~~~~~~~a------~~al 91 (372)
T 4gmf_A 18 GEMYLNAFMQPPEGLELVGLLAQGSARSRELAHAFGIPLYTSPEQITGMPDIACIVVRSTVAGGAGTQLA------RHFL 91 (372)
T ss_dssp THHHHHTTSSCCTTEEEEEEECCSSHHHHHHHHHTTCCEESSGGGCCSCCSEEEECCC--CTTSHHHHHH------HHHH
T ss_pred HHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHHhCCCEECCHHHHhcCCCEEEEECCCcccchhHHHHH------HHHH
Confidence 44455555544 45655 679999999888654 9999999999999999999999975331 1111 1224
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
..|+-|+----.++++.+++.+..+++|+.|.-+
T Consensus 92 ~aGkhVl~EKPl~~~ea~~l~~~A~~~g~~~~v~ 125 (372)
T 4gmf_A 92 ARGVHVIQEHPLHPDDISSLQTLAQEQGCCYWIN 125 (372)
T ss_dssp HTTCEEEEESCCCHHHHHHHHHHHHHHTCCEEEE
T ss_pred HcCCcEEEecCCCHHHHHHHHHHHHHcCCEEEEc
Confidence 4565444433467888889988888888877653
|
| >3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0012 Score=59.06 Aligned_cols=100 Identities=15% Similarity=0.242 Sum_probs=72.2
Q ss_pred ccHHHHHHHHhCC-CcEE--EEcCCchHHHHHHHc-CC---cccCCHHHHhhc-------CcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQG-HDVI--VYDKNTDASQTLAKE-GA---NMALSLSTLASG-------AEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~--~~dr~~~~~~~l~~~-g~---~~~~s~~e~~~~-------adivi~~v~~~~~~~~v~~~ 67 (286)
||...+..+...+ ++|. ++|+++++++.+.+. |+ ..++|+++++++ .|+|++|+|+....+.+..
T Consensus 51 ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~I~tp~~~H~~~~~~- 129 (417)
T 3v5n_A 51 IGAVHRIAARLDDHYELVAGALSSTPEKAEASGRELGLDPSRVYSDFKEMAIREAKLKNGIEAVAIVTPNHVHYAAAKE- 129 (417)
T ss_dssp HHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHHTCCGGGBCSCHHHHHHHHHHCTTCCSEEEECSCTTSHHHHHHH-
T ss_pred HHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHcCCCcccccCCHHHHHhcccccCCCCcEEEECCCcHHHHHHHHH-
Confidence 4556666666665 5664 679999999888654 77 688999999876 8999999998766555443
Q ss_pred CccccccCCCCC-EEEEcC-CCCchHHHHHHHHHHhcCCceEe
Q psy764 68 SDGILKHAKPGV-IVIDSS-TVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 68 ~~~l~~~l~~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+..|+ ++++.- +.+..+++++.+..++.|..+.-
T Consensus 130 ------al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v 166 (417)
T 3v5n_A 130 ------FLKRGIHVICDKPLTSTLADAKKLKKAADESDALFVL 166 (417)
T ss_dssp ------HHTTTCEEEEESSSCSSHHHHHHHHHHHHHCSSCEEE
T ss_pred ------HHhCCCeEEEECCCcCCHHHHHHHHHHHHHcCCEEEE
Confidence 344565 555542 56778888898888888765543
|
| >1pzg_A LDH, lactate dehydrogenase; apicomplexa, APAD, tetramer, rossmann fold, oxidoreductase; HET: CME A3D; 1.60A {Toxoplasma gondii} SCOP: c.2.1.5 d.162.1.1 PDB: 1pzf_A* 1pze_A* 1pzh_A* 3om9_A* 1sov_A 1sow_A* 3czm_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00045 Score=60.02 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHH--------c----CCcccCCHHHHhhcCcEEEEec
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAK--------E----GANMALSLSTLASGAEFIISML 55 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~--------~----g~~~~~s~~e~~~~adivi~~v 55 (286)
||+++|..|+.+|+ +|.+||+++++++.... . .+..+.++++++++||+||+++
T Consensus 20 vG~~lA~~la~~g~~~V~L~D~~~~~~~~~~~~l~~~~~~~~~~~~i~~t~d~~ea~~~aDiVi~a~ 86 (331)
T 1pzg_A 20 IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTA 86 (331)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECC
T ss_pred HHHHHHHHHHhCCCCeEEEEECChhHHHHHHHHHHhhhhccCCCCEEEEeCCHHHHhCCCCEEEEcc
Confidence 79999999999998 99999999987765211 1 1333578888999999999999
|
| >2v6b_A L-LDH, L-lactate dehydrogenase; oxidoreductase, radioresistance, NAD, cytoplasm, mesophilic, glycolysis; 2.50A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00043 Score=59.40 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=51.9
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHH-c--C------Cccc-CCHHHHhhcCcEEEEecCChh----------
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAK-E--G------ANMA-LSLSTLASGAEFIISMLPASQ---------- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~-~--g------~~~~-~s~~e~~~~adivi~~v~~~~---------- 59 (286)
||+++|..|+.+|+ +|.+||+++++.+.... . + .++. ++ .+++++||+||++++.+.
T Consensus 11 vG~~la~~la~~g~~~eV~L~D~~~~~~~~~~~~l~~~~~~~~~~~i~~~~-~~a~~~aDvVIi~~~~~~~~g~~r~dl~ 89 (304)
T 2v6b_A 11 VGSTAAFALVLRGSCSELVLVDRDEDRAQAEAEDIAHAAPVSHGTRVWHGG-HSELADAQVVILTAGANQKPGESRLDLL 89 (304)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHTTSCCTTSCCEEEEEC-GGGGTTCSEEEECC------------CH
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHhhhhhhhhcCCeEEEECC-HHHhCCCCEEEEcCCCCCCCCCcHHHHH
Confidence 79999999999999 99999999887654322 1 1 1222 33 467889999999996553
Q ss_pred -----HHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 60 -----DVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 60 -----~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.++++... +.+. .++.+++..|+
T Consensus 90 ~~n~~i~~~i~~~---i~~~-~p~~~vi~~tN 117 (304)
T 2v6b_A 90 EKNADIFRELVPQ---ITRA-APDAVLLVTSN 117 (304)
T ss_dssp HHHHHHHHHHHHH---HHHH-CSSSEEEECSS
T ss_pred HhHHHHHHHHHHH---HHHh-CCCeEEEEecC
Confidence 12444442 4444 46677766554
|
| >3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0011 Score=58.91 Aligned_cols=100 Identities=8% Similarity=0.053 Sum_probs=73.3
Q ss_pred ccHHHHHHHHhCC-CcEE--EEcCCchHHHHHHH-cCC---cccCCHHHHhhc-------CcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQG-HDVI--VYDKNTDASQTLAK-EGA---NMALSLSTLASG-------AEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~--~~dr~~~~~~~l~~-~g~---~~~~s~~e~~~~-------adivi~~v~~~~~~~~v~~~ 67 (286)
||...+..+...+ ++|. ++|+++++++.+.+ .|+ ..++|+++++++ .|+|++|+|+....+.+..
T Consensus 26 ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~g~~~~~~~~~~~~ll~~~~~~~~~vD~V~i~tp~~~H~~~~~~- 104 (398)
T 3dty_A 26 IGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQLGVDSERCYADYLSMFEQEARRADGIQAVSIATPNGTHYSITKA- 104 (398)
T ss_dssp SHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHHTTCCGGGBCSSHHHHHHHHTTCTTCCSEEEEESCGGGHHHHHHH-
T ss_pred hHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHHhCCCcceeeCCHHHHHhcccccCCCCCEEEECCCcHHHHHHHHH-
Confidence 6777777777665 5765 68999999988865 477 688999999875 8999999998766555443
Q ss_pred CccccccCCCCCEE-EEc-CCCCchHHHHHHHHHHhcCCceEe
Q psy764 68 SDGILKHAKPGVIV-IDS-STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 68 ~~~l~~~l~~g~iv-id~-st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+..|+-| ++. -+.+..+++++.+..++.|..+.-
T Consensus 105 ------al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v 141 (398)
T 3dty_A 105 ------ALEAGLHVVCEKPLCFTVEQAENLRELSHKHNRIVGV 141 (398)
T ss_dssp ------HHHTTCEEEECSCSCSCHHHHHHHHHHHHHTTCCEEE
T ss_pred ------HHHCCCeEEEeCCCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 23456544 443 256678888998888888876543
|
| >3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0012 Score=58.55 Aligned_cols=102 Identities=13% Similarity=0.216 Sum_probs=73.5
Q ss_pred ccHHHHHHHHhC-CCcE-EEEcCCchHHHHHHHc-CCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQ-GHDV-IVYDKNTDASQTLAKE-GANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||..++..|.+. +.+| .++|+++++.+.+.+. |+..+.|+++++++ .|+|++|+|+....+.+.. .+.
T Consensus 14 ~~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~~~g~~~~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~-------al~ 86 (387)
T 3moi_A 14 GSVLMAPAMRHHPDAQIVAACDPNEDVRERFGKEYGIPVFATLAEMMQHVQMDAVYIASPHQFHCEHVVQ-------ASE 86 (387)
T ss_dssp HHTTHHHHHHHCTTEEEEEEECSCHHHHHHHHHHHTCCEESSHHHHHHHSCCSEEEECSCGGGHHHHHHH-------HHH
T ss_pred HHHHHHHHHHhCCCeEEEEEEeCCHHHHHHHHHHcCCCeECCHHHHHcCCCCCEEEEcCCcHHHHHHHHH-------HHH
Confidence 345567777765 4554 4789999998887654 88899999999975 9999999998765554443 234
Q ss_pred CCC-EEEEcC-CCCchHHHHHHHHHHhcCCceEecc
Q psy764 77 PGV-IVIDSS-TVDPQVPQTLSNLAREKQITFLDAP 110 (286)
Q Consensus 77 ~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~~p 110 (286)
.|+ ++++.- +.++...+++.+..+++|..+..+.
T Consensus 87 aGk~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~~ 122 (387)
T 3moi_A 87 QGLHIIVEKPLTLSRDEADRMIEAVERAGVHLVVGT 122 (387)
T ss_dssp TTCEEEECSCCCSCHHHHHHHHHHHHHHTCCEEECC
T ss_pred CCCceeeeCCccCCHHHHHHHHHHHHHhCCeEEEEe
Confidence 555 445532 5678888899888888887666543
|
| >2axq_A Saccharopine dehydrogenase; rossmann fold variant, saccharopine reductase fold (domain II), alpha/beta protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00071 Score=61.52 Aligned_cols=100 Identities=19% Similarity=0.248 Sum_probs=70.6
Q ss_pred ccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHc-CCcc--c-----CCHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKE-GANM--A-----LSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~-g~~~--~-----~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
+|.+++..|++. |++|+++||++++++.+.+. ++.. . +++.++++++|+||.|+|.... ..+. .
T Consensus 34 iG~aia~~L~~~~g~~V~v~~R~~~ka~~la~~~~~~~~~~D~~d~~~l~~~l~~~DvVIn~tp~~~~-~~v~------~ 106 (467)
T 2axq_A 34 VAQPVIDTLAANDDINVTVACRTLANAQALAKPSGSKAISLDVTDDSALDKVLADNDVVISLIPYTFH-PNVV------K 106 (467)
T ss_dssp THHHHHHHHHTSTTEEEEEEESSHHHHHHHHGGGTCEEEECCTTCHHHHHHHHHTSSEEEECSCGGGH-HHHH------H
T ss_pred HHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhcCCcEEEEecCCHHHHHHHHcCCCEEEECCchhhh-HHHH------H
Confidence 789999999998 78999999999998888654 4321 1 1345677899999999996432 2222 1
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
..+.+|..++|.+...|.. ..+.+..++.|+.+++.
T Consensus 107 a~l~~g~~vvd~~~~~p~~-~~Ll~~Ak~aGv~~i~g 142 (467)
T 2axq_A 107 SAIRTKTDVVTSSYISPAL-RELEPEIVKAGITVMNE 142 (467)
T ss_dssp HHHHHTCEEEECSCCCHHH-HHHHHHHHHHTCEEECS
T ss_pred HHHhcCCEEEEeecCCHHH-HHHHHHHHHcCCEEEec
Confidence 2345678889987656654 55666677778777654
|
| >3jyo_A Quinate/shikimate dehydrogenase; enzyme-cofactor complex, amino-acid biosynthesis, aromatic A biosynthesis, NAD, oxidoreductase; HET: NAD; 1.00A {Corynebacterium glutamicum} PDB: 3jyp_A* 3jyq_A* 2nlo_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00096 Score=56.58 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=67.1
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc------C--Cccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE------G--ANMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~------g--~~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
+|.+++..|++.|. +|+++||++++.+.+.+. + +... +++.+.++++|+||-|+|..-.-.. . ..
T Consensus 138 ~g~aia~~L~~~G~~~v~i~~R~~~~a~~la~~~~~~~~~~~i~~~~~~~l~~~l~~~DiVInaTp~Gm~~~~---~-~p 213 (283)
T 3jyo_A 138 VGNAVAYALVTHGVQKLQVADLDTSRAQALADVINNAVGREAVVGVDARGIEDVIAAADGVVNATPMGMPAHP---G-TA 213 (283)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHHTSCCEEEECSTTHHHHHHHSSEEEECSSTTSTTSC---S-CS
T ss_pred HHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhhcCCceEEEcCHHHHHHHHhcCCEEEECCCCCCCCCC---C-CC
Confidence 57889999999998 699999999998877542 1 1122 3777888999999999985311000 0 00
Q ss_pred c-cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 71 I-LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 71 l-~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+ ...++++.+|+|+.-. |..+. +.+..+++|+..++
T Consensus 214 i~~~~l~~~~~v~DlvY~-P~~T~-ll~~A~~~G~~~~~ 250 (283)
T 3jyo_A 214 FDVSCLTKDHWVGDVVYM-PIETE-LLKAARALGCETLD 250 (283)
T ss_dssp SCGGGCCTTCEEEECCCS-SSSCH-HHHHHHHHTCCEEC
T ss_pred CCHHHhCCCCEEEEecCC-CCCCH-HHHHHHHCcCeEeC
Confidence 1 2346788999998654 43332 33445667877665
|
| >3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0008 Score=54.60 Aligned_cols=59 Identities=14% Similarity=0.171 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-cCCccc----CC---HHHH-hhcCcEEEEecCChhH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-EGANMA----LS---LSTL-ASGAEFIISMLPASQD 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-~g~~~~----~s---~~e~-~~~adivi~~v~~~~~ 60 (286)
+|..+++.|.+.|++|+++|+++++++.+.+ .|..+. .+ +.++ ++++|+||++++++..
T Consensus 11 ~G~~la~~L~~~g~~v~vid~~~~~~~~l~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~ 78 (218)
T 3l4b_C 11 TAYYLARSMLSRKYGVVIINKDRELCEEFAKKLKATIIHGDGSHKEILRDAEVSKNDVVVILTPRDEV 78 (218)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHSSSEEEESCTTSHHHHHHHTCCTTCEEEECCSCHHH
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHcCCeEEEcCCCCHHHHHhcCcccCCEEEEecCCcHH
Confidence 6899999999999999999999999988764 354221 12 2333 5689999999998643
|
| >3bio_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, MCSG, PSI-2, GFO/IDH/MO family, protein structure initiative; HET: MSE EPE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00068 Score=58.14 Aligned_cols=95 Identities=15% Similarity=0.162 Sum_probs=59.2
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHHcCCcc--cCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAKEGANM--ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~--~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||..++..|.+. +++|. ++|+++++++. .|+.. .+++.+. .++|+||+|+|+....+.+. ..+..
T Consensus 20 iG~~~~~~l~~~~~~elvav~d~~~~~~~~---~g~~~~~~~~l~~~-~~~DvViiatp~~~h~~~~~-------~al~a 88 (304)
T 3bio_A 20 IGRYALQALREAPDFEIAGIVRRNPAEVPF---ELQPFRVVSDIEQL-ESVDVALVCSPSREVERTAL-------EILKK 88 (304)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECC----------CCTTSCEESSGGGS-SSCCEEEECSCHHHHHHHHH-------HHHTT
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCHHHHHH---cCCCcCCHHHHHhC-CCCCEEEECCCchhhHHHHH-------HHHHc
Confidence 678888888874 56776 78999987664 56542 3445444 68999999999765544433 23556
Q ss_pred CCEEEEcCCC---CchHHHHHHHHHHhcCCceE
Q psy764 78 GVIVIDSSTV---DPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 78 g~ivid~st~---~p~~~~~~~~~~~~~g~~~~ 107 (286)
|+.|++.+.. .+...+++.+..++.|..++
T Consensus 89 G~~Vi~ekP~~a~~~~~~~~l~~~a~~~g~~~~ 121 (304)
T 3bio_A 89 GICTADSFDIHDGILALRRSLGDAAGKSGAAAV 121 (304)
T ss_dssp TCEEEECCCCGGGHHHHHHHHHHHHHHHTCEEE
T ss_pred CCeEEECCCCCCCCHHHHHHHHHHHHhCCCEEE
Confidence 8888876543 45566777777777775443
|
| >1nvt_A Shikimate 5'-dehydrogenase; structural genomics, PSI, protein structure initiative; HET: NAP; 2.35A {Methanocaldococcus jannaschii} SCOP: c.2.1.7 c.58.1.5 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00023 Score=60.54 Aligned_cols=99 Identities=17% Similarity=0.180 Sum_probs=64.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-C----------CcccCCHHHHhhcCcEEEEecCChhHH--HHHhcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-G----------ANMALSLSTLASGAEFIISMLPASQDV--LDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g----------~~~~~s~~e~~~~adivi~~v~~~~~~--~~v~~~~ 68 (286)
||.+++..|++.| +|+++||+.++.+.+.+. + +.+ .+..+...++|+||.|.+....- +.....
T Consensus 139 iG~aia~~L~~~G-~V~v~~r~~~~~~~l~~~~~~~~~~~~~~~~d~-~~~~~~~~~~DilVn~ag~~~~~~~~~~~~~- 215 (287)
T 1nvt_A 139 AARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKF-SGLDVDLDGVDIIINATPIGMYPNIDVEPIV- 215 (287)
T ss_dssp HHHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEE-ECTTCCCTTCCEEEECSCTTCTTCCSSCCSS-
T ss_pred HHHHHHHHHHHCC-CEEEEECCHHHHHHHHHHHhhhcccccceeEEE-eeHHHhhCCCCEEEECCCCCCCCCCCCCCCC-
Confidence 6899999999999 999999999888777532 1 011 12245567899999999864321 000000
Q ss_pred ccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 69 DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
-.+.++++.+++|++.. |..+. +.+..++.|+.++
T Consensus 216 --~~~~l~~~~~v~Dv~y~-p~~t~-ll~~a~~~G~~~~ 250 (287)
T 1nvt_A 216 --KAEKLREDMVVMDLIYN-PLETV-LLKEAKKVNAKTI 250 (287)
T ss_dssp --CSTTCCSSSEEEECCCS-SSSCH-HHHHHHTTTCEEE
T ss_pred --CHHHcCCCCEEEEeeeC-CccCH-HHHHHHHCCCEEe
Confidence 02346788999999874 54433 4455666676654
|
| >3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0013 Score=58.88 Aligned_cols=101 Identities=20% Similarity=0.208 Sum_probs=68.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-C---C---HHHH-hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-L---S---LSTL-ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~---s---~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.+.|++|++.|+++++++.+.+.|..+. . + +.++ ++++|+||++++++.....++. ...
T Consensus 15 ~G~~va~~L~~~g~~vvvId~d~~~v~~~~~~g~~vi~GDat~~~~L~~agi~~A~~viv~~~~~~~n~~i~~----~ar 90 (413)
T 3l9w_A 15 FGQITGRLLLSSGVKMVVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDPQTNLQLTE----MVK 90 (413)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCHHHHHHHHHTTCCCEESCTTCHHHHHHTTTTTCSEEEECCSSHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHhCCCeEEEcCCCCHHHHHhcCCCccCEEEECCCChHHHHHHHH----HHH
Confidence 6899999999999999999999999999988876443 1 2 2222 5689999999998765555554 344
Q ss_pred cCCCC-CEEEEcCCCCchHHHHHHHHHHhcCCceEeccCC
Q psy764 74 HAKPG-VIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVS 112 (286)
Q Consensus 74 ~l~~g-~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~ 112 (286)
.+.+. ++|+-... +. -...+.+.|+..+-.|..
T Consensus 91 ~~~p~~~Iiara~~--~~----~~~~L~~~Gad~Vi~~~~ 124 (413)
T 3l9w_A 91 EHFPHLQIIARARD--VD----HYIRLRQAGVEKPERETF 124 (413)
T ss_dssp HHCTTCEEEEEESS--HH----HHHHHHHTTCSSCEETTH
T ss_pred HhCCCCeEEEEECC--HH----HHHHHHHCCCCEEECccH
Confidence 45555 45543322 33 234456678766544433
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00039 Score=61.66 Aligned_cols=83 Identities=12% Similarity=0.141 Sum_probs=58.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc--CC---------------------------HHHHhhcCcEEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA--LS---------------------------LSTLASGAEFII 52 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~--~s---------------------------~~e~~~~adivi 52 (286)
||...++.+...|.+|++|||++++.+.+.+.|.... ++ +.+.++++|+||
T Consensus 183 iG~~aa~~a~~~Ga~V~~~d~~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~~~~~~~~s~~~~~~~~~~l~~~~~~aDvVi 262 (384)
T 1l7d_A 183 AGLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAI 262 (384)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCCeEEeecccccccccccccchhhcCHHHHhhhHHHHHHHhCCCCEEE
Confidence 6888899999999999999999998888877776544 11 567788999999
Q ss_pred EecCChhH-HHHHhcCCccccccCCCCCEEEEcCC
Q psy764 53 SMLPASQD-VLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 53 ~~v~~~~~-~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.|++.|.. ...++. ...++.+++|.+|||++.
T Consensus 263 ~~~~~pg~~~~~li~--~~~l~~mk~g~vivdva~ 295 (384)
T 1l7d_A 263 TTALIPGKPAPVLIT--EEMVTKMKPGSVIIDLAV 295 (384)
T ss_dssp ECCCCTTSCCCCCSC--HHHHTTSCTTCEEEETTG
T ss_pred ECCccCCCCCCeeeC--HHHHhcCCCCCEEEEEec
Confidence 99943211 011111 012345778999999874
|
| >3ngx_A Bifunctional protein fold; methylenetetrahydrofolate dehydrogenase/cyclohydrolase; 2.30A {Thermoplasma acidophilum} PDB: 3ngl_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00084 Score=56.21 Aligned_cols=63 Identities=13% Similarity=0.222 Sum_probs=50.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.++|..|.+.|.+|++.+++ +.++++.++++|+||.+++.+. ++. ...+++|.+|
T Consensus 162 VG~plA~lL~~~gAtVtv~~~~--------------t~~L~~~~~~ADIVI~Avg~p~----~I~-----~~~vk~GavV 218 (276)
T 3ngx_A 162 VGRPLSMMLLNRNYTVSVCHSK--------------TKDIGSMTRSSKIVVVAVGRPG----FLN-----REMVTPGSVV 218 (276)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHHSSEEEECSSCTT----CBC-----GGGCCTTCEE
T ss_pred HHHHHHHHHHHCCCeEEEEeCC--------------cccHHHhhccCCEEEECCCCCc----ccc-----HhhccCCcEE
Confidence 6889999999999999998764 3578899999999999999754 222 2346899999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||++..
T Consensus 219 IDvgi~ 224 (276)
T 3ngx_A 219 IDVGIN 224 (276)
T ss_dssp EECCCE
T ss_pred EEeccC
Confidence 999764
|
| >3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0021 Score=56.41 Aligned_cols=99 Identities=16% Similarity=0.164 Sum_probs=68.7
Q ss_pred ccHH-HHHHHHhC-CCcE-EEEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTL-KLFFLQFQ-GHDV-IVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~-lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||.. .+..|.+. +++| .++|+++++++. ...+...++|++++++ +.|+|++|+|+....+.+.. .+.
T Consensus 18 ~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~H~~~~~~-------al~ 89 (364)
T 3e82_A 18 VGKTFHAPLIRSVPGLNLAFVASRDEEKVKR-DLPDVTVIASPEAAVQHPDVDLVVIASPNATHAPLARL-------ALN 89 (364)
T ss_dssp HHHHTHHHHHHTSTTEEEEEEECSCHHHHHH-HCTTSEEESCHHHHHTCTTCSEEEECSCGGGHHHHHHH-------HHH
T ss_pred HHHHHHHHHHhhCCCeEEEEEEcCCHHHHHh-hCCCCcEECCHHHHhcCCCCCEEEEeCChHHHHHHHHH-------HHH
Confidence 3443 44555554 5676 478999987652 1226788899999998 78999999998766555543 345
Q ss_pred CCCEEEEcC--CCCchHHHHHHHHHHhcCCceEe
Q psy764 77 PGVIVIDSS--TVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 77 ~g~ivid~s--t~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.|+-|+.-. +.++.+.+++.+..++.|..+.-
T Consensus 90 aGk~Vl~EKPla~~~~e~~~l~~~a~~~g~~~~v 123 (364)
T 3e82_A 90 AGKHVVVDKPFTLDMQEARELIALAEEKQRLLSV 123 (364)
T ss_dssp TTCEEEECSCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEeCCCcCCHHHHHHHHHHHHHhCCeEEE
Confidence 666555444 56788888998888888876543
|
| >1lld_A L-lactate dehydrogenase; oxidoreductase(CHOH (D)-NAD (A)); HET: NAD; 2.00A {Bifidobacterium longum subsp} SCOP: c.2.1.5 d.162.1.1 PDB: 1lth_T* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00076 Score=58.07 Aligned_cols=80 Identities=13% Similarity=0.243 Sum_probs=53.3
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHH--HHH-HcCC------cc--cCCHHHHhhcCcEEEEecCChh---------
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQ--TLA-KEGA------NM--ALSLSTLASGAEFIISMLPASQ--------- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~--~l~-~~g~------~~--~~s~~e~~~~adivi~~v~~~~--------- 59 (286)
||++++..|+++|+ +|++|||++++.+ .+. ..+. .+ ..+ .+.++++|+||++++.++
T Consensus 18 vG~~~a~~l~~~g~~~~V~l~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~aD~Vii~v~~~~~~g~~r~~~ 96 (319)
T 1lld_A 18 VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDD-PEICRDADMVVITAGPRQKPGQSRLEL 96 (319)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESC-GGGGTTCSEEEECCCCCCCTTCCHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHhhhhhcCCeEEEeCCC-HHHhCCCCEEEECCCCCCCCCCCHHHH
Confidence 79999999999999 9999999987765 221 2222 11 123 356789999999996542
Q ss_pred ------HHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 60 ------DVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 60 ------~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.+++++.. +.+. .++.+|+..++
T Consensus 97 ~~~n~~~~~~~~~~---i~~~-~~~~~vi~~~N 125 (319)
T 1lld_A 97 VGATVNILKAIMPN---LVKV-APNAIYMLITN 125 (319)
T ss_dssp HHHHHHHHHHHHHH---HHHH-CTTSEEEECCS
T ss_pred HHHHHHHHHHHHHH---HHHh-CCCceEEEecC
Confidence 22344442 4443 56777776654
|
| >1ff9_A Saccharopine reductase; lysine biosynthesis, alpha-aminoadipate pathway, dehydrogenase, oxidoreductase; 2.00A {Magnaporthe grisea} SCOP: c.2.1.3 d.81.1.2 PDB: 1e5l_A* 1e5q_A | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00076 Score=61.09 Aligned_cols=100 Identities=18% Similarity=0.270 Sum_probs=68.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-C-C-----ccc--CCHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-G-A-----NMA--LSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g-~-----~~~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
||..++..|++.|++|.++||++++++.+.+. + . .+. +++.++++++|+||.|.|..... .+. .
T Consensus 14 iG~~ia~~L~~~G~~V~v~~R~~~~a~~la~~~~~~~~~~~Dv~d~~~l~~~l~~~DvVIn~a~~~~~~-~i~------~ 86 (450)
T 1ff9_A 14 VTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHA-TVI------K 86 (450)
T ss_dssp THHHHHHHHHTTTCEEEEEESSHHHHHHTTTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECCC--CHH-HHH------H
T ss_pred HHHHHHHHHHhCcCEEEEEECCHHHHHHHHHhcCCceEEEeecCCHHHHHHHHcCCcEEEECCccccch-HHH------H
Confidence 79999999999999999999999988776542 2 1 111 13456778999999999863222 221 1
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
..+.+|+.+++.+...|. ...+.+.+.+.|+.+++.
T Consensus 87 a~l~~g~~vvd~~~~~~~-~~~l~~aA~~aGv~~i~g 122 (450)
T 1ff9_A 87 SAIRQKKHVVTTSYVSPA-MMELDQAAKDAGITVMNE 122 (450)
T ss_dssp HHHHHTCEEEESSCCCHH-HHHTHHHHHHTTCEEECS
T ss_pred HHHhCCCeEEEeecccHH-HHHHHHHHHHCCCeEEeC
Confidence 223456778887655554 456667777788877654
|
| >3f4l_A Putative oxidoreductase YHHX; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Escherichia coli k-12} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00066 Score=59.23 Aligned_cols=88 Identities=14% Similarity=0.154 Sum_probs=64.4
Q ss_pred CCcEE-EEcCCchHHHHHHHc-CCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcC--CC
Q psy764 14 GHDVI-VYDKNTDASQTLAKE-GANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSS--TV 87 (286)
Q Consensus 14 G~~V~-~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~s--t~ 87 (286)
+++|. ++|+++++.+...+. ++..++|+++++++ .|+|++|+|+....+.+.. .+..|+.|+.-. +.
T Consensus 28 ~~~l~av~d~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~-------al~aGk~Vl~EKP~a~ 100 (345)
T 3f4l_A 28 SWHVAHIFRRHAKPEEQAPIYSHIHFTSDLDEVLNDPDVKLVVVCTHADSHFEYAKR-------ALEAGKNVLVEKPFTP 100 (345)
T ss_dssp TEEEEEEECSSCCGGGGSGGGTTCEEESCTHHHHTCTTEEEEEECSCGGGHHHHHHH-------HHHTTCEEEECSSSCS
T ss_pred CeEEEEEEcCCHhHHHHHHhcCCCceECCHHHHhcCCCCCEEEEcCChHHHHHHHHH-------HHHcCCcEEEeCCCCC
Confidence 56665 889998877544443 67888999999976 8999999998766555543 345677665444 56
Q ss_pred CchHHHHHHHHHHhcCCceEe
Q psy764 88 DPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 88 ~p~~~~~~~~~~~~~g~~~~~ 108 (286)
++.+.+++.+..+++|..+.-
T Consensus 101 ~~~e~~~l~~~a~~~g~~~~v 121 (345)
T 3f4l_A 101 TLAQAKELFALAKSKGLTVTP 121 (345)
T ss_dssp SHHHHHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHHHHcCCeEEE
Confidence 788888998888888876553
|
| >3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00054 Score=60.30 Aligned_cols=105 Identities=23% Similarity=0.262 Sum_probs=68.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC----Ccc--cCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG----ANM--ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g----~~~--~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||+.++..|.+ .++|.++||+.++++.+.+.. +.+ .+++.++++++|+||.|+|... -..+.. ..+
T Consensus 27 vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~~~~~~~~~d~~d~~~l~~~~~~~DvVi~~~p~~~-~~~v~~------~~~ 98 (365)
T 3abi_A 27 IGRAIAWDLKD-EFDVYIGDVNNENLEKVKEFATPLKVDASNFDKLVEVMKEFELVIGALPGFL-GFKSIK------AAI 98 (365)
T ss_dssp HHHHHHHHHTT-TSEEEEEESCHHHHHHHTTTSEEEECCTTCHHHHHHHHTTCSEEEECCCGGG-HHHHHH------HHH
T ss_pred HHHHHHHHHhc-CCCeEEEEcCHHHHHHHhccCCcEEEecCCHHHHHHHHhCCCEEEEecCCcc-cchHHH------HHH
Confidence 68889988865 589999999999888775432 122 2245677889999999999542 233332 234
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCH
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGT 115 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~ 115 (286)
..|+-++|.|-. +...+++.+...+.|+.++ ++.+..|.
T Consensus 99 ~~g~~yvD~s~~-~~~~~~l~~~a~~~g~~~i~~~G~~PG~ 138 (365)
T 3abi_A 99 KSKVDMVDVSFM-PENPLELRDEAEKAQVTIVFDAGFAPGL 138 (365)
T ss_dssp HHTCEEEECCCC-SSCGGGGHHHHHHTTCEEECCCBTTTBH
T ss_pred hcCcceEeeecc-chhhhhhhhhhccCCceeeecCCCCCch
Confidence 567788887643 3344556666666776555 33344343
|
| >1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9 | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0019 Score=49.19 Aligned_cols=96 Identities=14% Similarity=0.114 Sum_probs=57.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC-chHHHHHHH---cCCccc-------CCHHHH-hhcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN-TDASQTLAK---EGANMA-------LSLSTL-ASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~-~~~~~~l~~---~g~~~~-------~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
+|..+++.|.+.|++|++.|++ +++.+.+.+ .|..+. +.+.++ ++++|+||++++++..-..+..
T Consensus 14 vG~~la~~L~~~g~~V~vid~~~~~~~~~~~~~~~~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~--- 90 (153)
T 1id1_A 14 LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVL--- 90 (153)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCCEEEEECCChHHHHHHHHhhcCCCeEEEcCCCCHHHHHHcChhhCCEEEEecCChHHHHHHHH---
Confidence 6899999999999999999998 465555542 243221 123344 6789999999998643333322
Q ss_pred cccccC-CCCCEEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 70 GILKHA-KPGVIVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 70 ~l~~~l-~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
....+ +..++++..+. +.... .+...|+..+
T Consensus 91 -~a~~~~~~~~ii~~~~~--~~~~~----~l~~~G~~~v 122 (153)
T 1id1_A 91 -SAKDMSSDVKTVLAVSD--SKNLN----KIKMVHPDII 122 (153)
T ss_dssp -HHHHHTSSSCEEEECSS--GGGHH----HHHTTCCSEE
T ss_pred -HHHHHCCCCEEEEEECC--HHHHH----HHHHcCCCEE
Confidence 23333 33456665443 33332 2345566543
|
| >1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00091 Score=58.80 Aligned_cols=85 Identities=13% Similarity=0.167 Sum_probs=58.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-------CCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-------LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-------~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
+|...+..+...|.+|+++||++++.+.+.+.+.... .++.+.+.++|+||-|++.+......+. .+...+.
T Consensus 178 vG~~aa~~a~~~Ga~V~v~dr~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~DvVI~~~~~~~~~~~~li-~~~~~~~ 256 (361)
T 1pjc_A 178 VGTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILV-PASLVEQ 256 (361)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCB-CHHHHTT
T ss_pred HHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHhhCceeEeeeCCHHHHHHHHcCCCEEEECCCcCCCCCCeec-CHHHHhh
Confidence 6888999999999999999999999888876543221 2345667789999999976532000000 0012344
Q ss_pred CCCCCEEEEcCCC
Q psy764 75 AKPGVIVIDSSTV 87 (286)
Q Consensus 75 l~~g~ivid~st~ 87 (286)
++++.+|+|.+..
T Consensus 257 ~~~g~~ivdv~~~ 269 (361)
T 1pjc_A 257 MRTGSVIVDVAVD 269 (361)
T ss_dssp SCTTCEEEETTCT
T ss_pred CCCCCEEEEEecC
Confidence 6788899998754
|
| >1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0029 Score=54.98 Aligned_cols=99 Identities=16% Similarity=0.169 Sum_probs=69.9
Q ss_pred cHHHHHHHHhC--CCcE-EEEcCCchHHHHHHHc-CC-cccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 3 STLKLFFLQFQ--GHDV-IVYDKNTDASQTLAKE-GA-NMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 3 G~~lA~~L~~~--G~~V-~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
|...+..|.+. +.+| .++|+++++++.+.+. |+ ..++|++++++ +.|+|++|+|+....+.+.. .+
T Consensus 31 g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~-------al 103 (340)
T 1zh8_A 31 RELHLPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEK-------AL 103 (340)
T ss_dssp HHTHHHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHH-------HH
T ss_pred HHHHHHHHHhCCCceEEEEEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEEeCCchHHHHHHHH-------HH
Confidence 44566677665 4555 6789999999888654 65 77899999986 58999999998655444433 24
Q ss_pred CCCC-EEEEc-CCCCchHHHHHHHHHHhcCCceEe
Q psy764 76 KPGV-IVIDS-STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 76 ~~g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
..|+ ++++. -+.+..+.+++.+..++.|..+..
T Consensus 104 ~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v 138 (340)
T 1zh8_A 104 RKGVHVICEKPISTDVETGKKVVELSEKSEKTVYI 138 (340)
T ss_dssp HTTCEEEEESSSSSSHHHHHHHHHHHHHCSSCEEE
T ss_pred HCCCcEEEeCCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 4565 55553 245778888888888777765553
|
| >3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0024 Score=55.74 Aligned_cols=99 Identities=14% Similarity=0.131 Sum_probs=69.1
Q ss_pred ccHH-HHHHHHhC-CCcEE-EEcCCchHHHHHHHcCCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTL-KLFFLQFQ-GHDVI-VYDKNTDASQTLAKEGANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~-lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
||.. .+..|.+. +++|. ++|+++++++. ...+...++|+++++++ .|+|++|+|+....+.+.. .+.
T Consensus 18 ~g~~~~~~~~~~~~~~~l~av~d~~~~~~~~-~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~-------al~ 89 (352)
T 3kux_A 18 ASKTFHAPLIMGTPGLELAGVSSSDASKVHA-DWPAIPVVSDPQMLFNDPSIDLIVIPTPNDTHFPLAQS-------ALA 89 (352)
T ss_dssp HHHHTHHHHHHTSTTEEEEEEECSCHHHHHT-TCSSCCEESCHHHHHHCSSCCEEEECSCTTTHHHHHHH-------HHH
T ss_pred HHHHHHHHHHhhCCCcEEEEEECCCHHHHHh-hCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHH-------HHH
Confidence 3444 45556555 56654 78999988762 11267788999999976 8999999998766555543 244
Q ss_pred CCC-EEEEcC-CCCchHHHHHHHHHHhcCCceEe
Q psy764 77 PGV-IVIDSS-TVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 77 ~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.|+ ++++.- +.++...+++.+..++.|..+.-
T Consensus 90 aGkhV~~EKPla~~~~e~~~l~~~a~~~g~~~~v 123 (352)
T 3kux_A 90 AGKHVVVDKPFTVTLSQANALKEHADDAGLLLSV 123 (352)
T ss_dssp TTCEEEECSSCCSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEECCCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 565 566654 67788888998888888765543
|
| >3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0061 Score=53.42 Aligned_cols=96 Identities=14% Similarity=0.100 Sum_probs=69.3
Q ss_pred HHHHHHHhCCCc-EEEEcCCchHHHHHHHc-C-CcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 5 LKLFFLQFQGHD-VIVYDKNTDASQTLAKE-G-ANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 5 ~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~-g-~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
.++..+...+.+ |.++|+++++++.+.+. | ...++|+++++++ .|+|++|+|+....+.+.. .+..|+
T Consensus 41 ~~~~~~~~~~~~lvav~d~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~-------al~aGk 113 (361)
T 3u3x_A 41 GQVNCLLRAGARLAGFHEKDDALAAEFSAVYADARRIATAEEILEDENIGLIVSAAVSSERAELAIR-------AMQHGK 113 (361)
T ss_dssp HHHHHHHHTTCEEEEEECSCHHHHHHHHHHSSSCCEESCHHHHHTCTTCCEEEECCCHHHHHHHHHH-------HHHTTC
T ss_pred HHHHHhhcCCcEEEEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHH-------HHHCCC
Confidence 455666667887 45789999999888765 4 6788999999975 8999999997655554443 244555
Q ss_pred -EEEEcC-CCCchHHHHHHHHHHhcCCceE
Q psy764 80 -IVIDSS-TVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 80 -ivid~s-t~~p~~~~~~~~~~~~~g~~~~ 107 (286)
++++.= +.+..+.+++.+..++.|..+.
T Consensus 114 hVl~EKPla~~~~ea~~l~~~a~~~g~~l~ 143 (361)
T 3u3x_A 114 DVLVDKPGMTSFDQLAKLRRVQAETGRIFS 143 (361)
T ss_dssp EEEEESCSCSSHHHHHHHHHHHHTTCCCEE
T ss_pred eEEEeCCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 555542 5667888888888877776544
|
| >2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0043 Score=56.00 Aligned_cols=100 Identities=6% Similarity=0.060 Sum_probs=72.1
Q ss_pred ccHHHHHHHHhC-CCcE-EEEcCCchHHHHHHH----cC---CcccC----CHHHHhh--cCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQ-GHDV-IVYDKNTDASQTLAK----EG---ANMAL----SLSTLAS--GAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~----~g---~~~~~----s~~e~~~--~adivi~~v~~~~~~~~v~~ 66 (286)
||...+..|.+. |.+| .++|+++++++.+.+ .| ...+. |++++++ +.|+|++|+|+....+.+..
T Consensus 31 ~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~~~~g~~~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~h~~~~~~ 110 (444)
T 2ixa_A 31 RGQTHVENMARRDDVEIVAFADPDPYMVGRAQEILKKNGKKPAKVFGNGNDDYKNMLKDKNIDAVFVSSPWEWHHEHGVA 110 (444)
T ss_dssp HHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHHHHTTCCCCEEECSSTTTHHHHTTCTTCCEEEECCCGGGHHHHHHH
T ss_pred HHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHHHhcCCCCCceeccCCCCHHHHhcCCCCCEEEEcCCcHHHHHHHHH
Confidence 566777778764 5664 588999999887754 25 46677 9999987 58999999998766555543
Q ss_pred CCccccccCCCCC-EEEEc-CCCCchHHHHHHHHHHhcCCceEe
Q psy764 67 GSDGILKHAKPGV-IVIDS-STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 67 ~~~~l~~~l~~g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+..|+ ++++. .+.+..+.+++.+..++.|..+.-
T Consensus 111 -------al~aGkhV~~EKP~a~~~~ea~~l~~~a~~~g~~~~v 147 (444)
T 2ixa_A 111 -------AMKAGKIVGMEVSGAITLEECWDYVKVSEQTGVPLMA 147 (444)
T ss_dssp -------HHHTTCEEEECCCCCSSHHHHHHHHHHHHHHCCCEEE
T ss_pred -------HHHCCCeEEEeCCCcCCHHHHHHHHHHHHHhCCeEEE
Confidence 344566 45553 356778888998888888876553
|
| >4a26_A Putative C-1-tetrahydrofolate synthase, cytoplasm; oxidoreductase, hydrolase, leishmaniasis; 2.70A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0012 Score=55.92 Aligned_cols=63 Identities=16% Similarity=0.174 Sum_probs=48.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHH--HHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLS--TLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~--e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|.++|..|.+.|.+|++.+|... +++ +.++++|+||.+++.+.- +. ...+++|.
T Consensus 177 VG~p~A~lL~~~gAtVtv~~~~T~--------------~l~l~~~~~~ADIVI~Avg~p~~----I~-----~~~vk~Ga 233 (300)
T 4a26_A 177 VGAPVAALLMKENATVTIVHSGTS--------------TEDMIDYLRTADIVIAAMGQPGY----VK-----GEWIKEGA 233 (300)
T ss_dssp THHHHHHHHHHTTCEEEEECTTSC--------------HHHHHHHHHTCSEEEECSCCTTC----BC-----GGGSCTTC
T ss_pred HHHHHHHHHHHCCCeEEEEeCCCC--------------CchhhhhhccCCEEEECCCCCCC----Cc-----HHhcCCCc
Confidence 688999999999989999987432 344 889999999999997532 22 13468999
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
+|||++..
T Consensus 234 vVIDvgi~ 241 (300)
T 4a26_A 234 AVVDVGTT 241 (300)
T ss_dssp EEEECCCE
T ss_pred EEEEEecc
Confidence 99999764
|
| >1t2d_A LDH-P, L-lactate dehydrogenase; ternary complex, oxidoreductase; HET: NAD; 1.10A {Plasmodium falciparum} SCOP: c.2.1.5 d.162.1.1 PDB: 1t25_A* 1t26_A* 1t2c_A* 1t24_A* 2x8l_A 2ydn_A* 2a94_A* 1u4s_A* 1u5a_A* 1u5c_A* 1u4o_A* 1t2e_A* 1xiv_A* 1ceq_A 1ldg_A* 1cet_A* 1oc4_A* 2a92_A* 2aa3_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.0027 Score=54.81 Aligned_cols=56 Identities=14% Similarity=0.162 Sum_probs=42.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHH--------c--C--CcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAK--------E--G--ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~--------~--g--~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||+++|..|+..|+ +|.+||+++++++.... . . +..+.+. +++++||+||++++.|
T Consensus 15 vG~~ia~~la~~g~~~v~L~Di~~~~l~~~~~~l~~~~~~~~~~~~i~~t~d~-~al~~aD~Vi~a~g~p 83 (322)
T 1t2d_A 15 IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTY-DDLAGADVVIVTAGFT 83 (322)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCG-GGGTTCSEEEECCSCS
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHhhhhhcCCCcEEEECCCH-HHhCCCCEEEEeCCCC
Confidence 79999999999998 99999999887653211 1 1 3334667 7889999999998433
|
| >3upl_A Oxidoreductase; rossmann fold, NADPH binding; 1.50A {Brucella melitensis biovar abortus 230ORGANISM_TAXID} PDB: 3upy_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.0028 Score=56.90 Aligned_cols=100 Identities=10% Similarity=0.058 Sum_probs=63.1
Q ss_pred ccHHHHHHHHhC-CCc-EEEEcCCchHHHHHHHc--C----------------------CcccCCHHHHhh--cCcEEEE
Q psy764 2 ISTLKLFFLQFQ-GHD-VIVYDKNTDASQTLAKE--G----------------------ANMALSLSTLAS--GAEFIIS 53 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~-V~~~dr~~~~~~~l~~~--g----------------------~~~~~s~~e~~~--~adivi~ 53 (286)
||+.++..+.+. +.+ +.++||++++++.+.+. | ..+++|.+++++ +.|+|++
T Consensus 34 iG~~~~~~l~~~~~veLvAV~D~~~era~~~a~~~yG~~~~~~~~~~~~~i~~a~~~g~~~v~~D~eeLL~d~dIDaVvi 113 (446)
T 3upl_A 34 MGTDIVTQVARMQGIEVGALSARRLPNTFKAIRTAYGDEENAREATTESAMTRAIEAGKIAVTDDNDLILSNPLIDVIID 113 (446)
T ss_dssp HHHHHHHHHTTSSSEEEEEEECSSTHHHHHHHHHHHSSSTTEEECSSHHHHHHHHHTTCEEEESCHHHHHTCTTCCEEEE
T ss_pred HHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHHHhcCCccccccccchhhhhhhhccCCceEECCHHHHhcCCCCCEEEE
Confidence 567777776543 445 55679999998877532 4 346789999987 5899999
Q ss_pred ecCChhHHHHHhcCCccccccCCCCCEEEEcCC-CCchHHHHHHHHHHhcCCceE
Q psy764 54 MLPASQDVLDAYDGSDGILKHAKPGVIVIDSST-VDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 54 ~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st-~~p~~~~~~~~~~~~~g~~~~ 107 (286)
|+|++..-.++ ....+..|+-|+-.+. ......+++.+..+++|+.|.
T Consensus 114 aTp~p~~H~e~------a~~AL~AGKHVv~~nk~l~~~eg~eL~~~A~e~Gvvl~ 162 (446)
T 3upl_A 114 ATGIPEVGAET------GIAAIRNGKHLVMMNVEADVTIGPYLKAQADKQGVIYS 162 (446)
T ss_dssp CSCCHHHHHHH------HHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEE
T ss_pred cCCChHHHHHH------HHHHHHcCCcEEecCcccCHHHHHHHHHHHHHhCCeee
Confidence 99986432222 2234667887774321 112234566666666676554
|
| >3ulk_A Ketol-acid reductoisomerase; branched-chain amino acid biosynthesis, rossmann fold, acetolactate, oxidoreductase; HET: CSX NDP; 2.30A {Escherichia coli} PDB: 1yrl_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0029 Score=56.32 Aligned_cols=79 Identities=14% Similarity=0.154 Sum_probs=62.2
Q ss_pred cHHHHHHHHhCCCcEEEEcCCc------hHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNT------DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~------~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
|.+-|.||..+|.+|.+--|.. ...+...+.|.++. ++.|+++.+|+|++.+||. .-..++.. +.+.++
T Consensus 49 G~AqAlNLRDSGv~V~Vglr~~s~~e~~~S~~~A~~~Gf~v~-~~~eA~~~ADvV~~L~PD~-~q~~vy~~---I~p~lk 123 (491)
T 3ulk_A 49 GLNQGLNMRDSGLDISYALRKEAIAEKRASWRKATENGFKVG-TYEELIPQADLVINLTPDK-QHSDVVRT---VQPLMK 123 (491)
T ss_dssp HHHHHHHHHHTTCEEEEEECHHHHHTTCHHHHHHHHTTCEEE-EHHHHGGGCSEEEECSCGG-GHHHHHHH---HGGGSC
T ss_pred hHHHHhHHHhcCCcEEEEeCCCCcccccchHHHHHHCCCEec-CHHHHHHhCCEEEEeCChh-hHHHHHHH---HHhhCC
Confidence 6788999999999999887732 23455667788765 6999999999999999985 44566653 999999
Q ss_pred CCCEEEEcCC
Q psy764 77 PGVIVIDSST 86 (286)
Q Consensus 77 ~g~ivid~st 86 (286)
+|+++.-...
T Consensus 124 ~G~~L~faHG 133 (491)
T 3ulk_A 124 DGAALGYSHG 133 (491)
T ss_dssp TTCEEEESSC
T ss_pred CCCEEEecCc
Confidence 9998875443
|
| >2yv1_A Succinyl-COA ligase [ADP-forming] subunit alpha; COA-binding domain, structural genomics, NPPSFA; 1.70A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0014 Score=55.83 Aligned_cols=96 Identities=15% Similarity=0.138 Sum_probs=65.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHH-HHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDAS-QTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~-~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
+|..++++|.+.|++ .+|..+|.+. +. -.|..+++|++|+.+ ..|++++++|. ..+.+++.. ..+ .|
T Consensus 25 ~G~~~~~~l~~~g~~-~V~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~Dv~ii~vp~-~~~~~~v~e---a~~---~G 94 (294)
T 2yv1_A 25 QGSFHTKKMLECGTK-IVGGVTPGKGGQN--VHGVPVFDTVKEAVKETDANASVIFVPA-PFAKDAVFE---AID---AG 94 (294)
T ss_dssp HHHHHHHHHHHTTCC-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHHHH---HHH---TT
T ss_pred HHHHHHHHHHhCCCe-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCEEEEccCH-HHHHHHHHH---HHH---CC
Confidence 577889999999998 5666665532 11 148888999999998 89999999995 455555542 222 23
Q ss_pred -CEEEEcCCCCc-hHHHHHHHHHHhcCCceE
Q psy764 79 -VIVIDSSTVDP-QVPQTLSNLAREKQITFL 107 (286)
Q Consensus 79 -~ivid~st~~p-~~~~~~~~~~~~~g~~~~ 107 (286)
+.+|..++..+ ...+++.+..++.|++++
T Consensus 95 i~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi 125 (294)
T 2yv1_A 95 IELIVVITEHIPVHDTMEFVNYAEDVGVKII 125 (294)
T ss_dssp CSEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 33444455444 456677787888887665
|
| >3fbt_A Chorismate mutase and shikimate 5-dehydrogenase fusion protein; structural genomics, oxidoreductase, amino-acid biosynthesis; 2.10A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0018 Score=54.83 Aligned_cols=99 Identities=16% Similarity=0.082 Sum_probs=63.2
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhH--HHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQD--VLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~--~~~v~~~~~~l~~~l~~ 77 (286)
+|.+++..|.+.|. +|+++||++++++.+++. +....+++.+ + ++|+||-|+|..-. ...... -...+++
T Consensus 133 aaraia~~L~~~G~~~v~v~nRt~~ka~~La~~~~~~~~~~l~~-l-~~DivInaTp~Gm~~~~~~~pi----~~~~l~~ 206 (282)
T 3fbt_A 133 AARAVLQYLKDNFAKDIYVVTRNPEKTSEIYGEFKVISYDELSN-L-KGDVIINCTPKGMYPKEGESPV----DKEVVAK 206 (282)
T ss_dssp THHHHHHHHHHTTCSEEEEEESCHHHHHHHCTTSEEEEHHHHTT-C-CCSEEEECSSTTSTTSTTCCSS----CHHHHTT
T ss_pred HHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhcCcccHHHHHh-c-cCCEEEECCccCccCCCccCCC----CHHHcCC
Confidence 57889999999998 899999999999888643 1111222333 4 89999999985311 000000 1123567
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+.+|+|+.-. |..+ .+.+..+++|+..++
T Consensus 207 ~~~v~DlvY~-P~~T-~ll~~A~~~G~~~~~ 235 (282)
T 3fbt_A 207 FSSAVDLIYN-PVET-LFLKYARESGVKAVN 235 (282)
T ss_dssp CSEEEESCCS-SSSC-HHHHHHHHTTCEEEC
T ss_pred CCEEEEEeeC-CCCC-HHHHHHHHCcCeEeC
Confidence 8999998654 4333 234455677877665
|
| >2nu8_A Succinyl-COA ligase [ADP-forming] subunit alpha; citric acid cycle, heterotetramer, ligase, ATP-grAsp fold, R fold; HET: COA; 2.15A {Escherichia coli} SCOP: c.2.1.8 c.23.4.1 PDB: 2nu9_A* 2nu7_A* 2nua_A* 2nu6_A* 2scu_A* 1jll_A* 1scu_A* 1jkj_A* 1cqj_A* 1cqi_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.0015 Score=55.56 Aligned_cols=96 Identities=15% Similarity=0.087 Sum_probs=63.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHH-HHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDAS-QTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~-~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||...++++.+.|++ .++..++.+. +. ..|..+++|++|+.+ ..|++++++|.+ ...+++.. .. ..|
T Consensus 19 ~G~~~~~~l~~~g~~-~V~~V~p~~~g~~--~~G~~vy~sl~el~~~~~~D~viI~tP~~-~~~~~~~e---a~---~~G 88 (288)
T 2nu8_A 19 QGTFHSEQAIAYGTK-MVGGVTPGKGGTT--HLGLPVFNTVREAVAATGATASVIYVPAP-FCKDSILE---AI---DAG 88 (288)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCGG-GHHHHHHH---HH---HTT
T ss_pred HHHHHHHHHHHCCCe-EEEEeCCCcccce--eCCeeccCCHHHHhhcCCCCEEEEecCHH-HHHHHHHH---HH---HCC
Confidence 578889999888998 4444444322 11 247888999999998 899999999965 44444432 22 233
Q ss_pred -CEEEEcCCC-CchHHHHHHHHHHhcCCceE
Q psy764 79 -VIVIDSSTV-DPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 79 -~ivid~st~-~p~~~~~~~~~~~~~g~~~~ 107 (286)
+.+|..++. +....+++.+..++.|++++
T Consensus 89 i~~iVi~t~G~~~~~~~~l~~~A~~~gv~li 119 (288)
T 2nu8_A 89 IKLIITITEGIPTLDMLTVKVKLDEAGVRMI 119 (288)
T ss_dssp CSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 344545554 44456688888888888765
|
| >2aef_A Calcium-gated potassium channel MTHK; rossmann fold, helix-turn-helix, Ca2+ binding, flexible interface; 1.70A {Methanothermobacterthermautotrophicus} PDB: 2aej_A 2aem_A 3rbx_A 2ogu_A 2fy8_A 3kxd_A | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0014 Score=53.73 Aligned_cols=95 Identities=13% Similarity=0.091 Sum_probs=61.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc----CCH---HHH-hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA----LSL---STL-ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~---~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.+.|+ |+++|+++++++.+. .|+.+. .+. .++ ++++|.||++++++..-..+.. ...
T Consensus 20 ~G~~la~~L~~~g~-v~vid~~~~~~~~~~-~~~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~d~~n~~~~~----~a~ 93 (234)
T 2aef_A 20 STLECLRELRGSEV-FVLAEDENVRKKVLR-SGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCIL----GIR 93 (234)
T ss_dssp HHHHHHHHSTTSEE-EEEESCGGGHHHHHH-TTCEEEESCTTCHHHHHHTTCTTCSEEEECCSCHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHhCCe-EEEEECCHHHHHHHh-cCCeEEEcCCCCHHHHHhcCcchhcEEEEcCCCcHHHHHHHH----HHH
Confidence 68899999999999 999999999988877 664331 122 223 5789999999998643333332 333
Q ss_pred cCCCC-CEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKPG-VIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~g-~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+.++ ++|+.+++ +.... .+.+.|+..+-
T Consensus 94 ~~~~~~~iia~~~~--~~~~~----~l~~~G~~~vi 123 (234)
T 2aef_A 94 KIDESVRIIAEAER--YENIE----QLRMAGADQVI 123 (234)
T ss_dssp HHCSSSEEEEECSS--GGGHH----HHHHHTCSEEE
T ss_pred HHCCCCeEEEEECC--HhHHH----HHHHCCCCEEE
Confidence 45555 66666544 33332 33355776553
|
| >3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0021 Score=58.28 Aligned_cols=80 Identities=20% Similarity=0.226 Sum_probs=62.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+..|.+|.++|+++.+.......|..+ .+..+++..+|+++.+......+..- ....++++.+|
T Consensus 276 IG~aiA~~Laa~GA~Viv~D~~~~~a~~Aa~~g~dv-~~lee~~~~aDvVi~atG~~~vl~~e------~l~~mk~gaiV 348 (488)
T 3ond_A 276 VGKGCAAALKQAGARVIVTEIDPICALQATMEGLQV-LTLEDVVSEADIFVTTTGNKDIIMLD------HMKKMKNNAIV 348 (488)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEE-CCGGGTTTTCSEEEECSSCSCSBCHH------HHTTSCTTEEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHhCCcc-CCHHHHHHhcCEEEeCCCChhhhhHH------HHHhcCCCeEE
Confidence 799999999999999999999998887777777654 46888999999999987654332221 23446789999
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
++.+...
T Consensus 349 vNaG~~~ 355 (488)
T 3ond_A 349 CNIGHFD 355 (488)
T ss_dssp EESSSTT
T ss_pred EEcCCCC
Confidence 9988653
|
| >1oi7_A Succinyl-COA synthetase alpha chain; SCS, ligase, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.23A {Thermus thermophilus} SCOP: c.2.1.8 c.23.4.1 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0026 Score=54.02 Aligned_cols=97 Identities=11% Similarity=0.035 Sum_probs=63.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCC-
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPG- 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g- 78 (286)
||..+++++.+.|++ .+|..+|.+... .-.|..+++|++|+.+ ..|++++++|. ..+.+++.. ..+ .|
T Consensus 19 ~G~~~~~~l~~~g~~-~v~~VnP~~~g~-~i~G~~vy~sl~el~~~~~~Dv~Ii~vp~-~~~~~~~~e---a~~---~Gi 89 (288)
T 1oi7_A 19 EGQFHTKQMLTYGTK-IVAGVTPGKGGM-EVLGVPVYDTVKEAVAHHEVDASIIFVPA-PAAADAALE---AAH---AGI 89 (288)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECTTCTTC-EETTEEEESSHHHHHHHSCCSEEEECCCH-HHHHHHHHH---HHH---TTC
T ss_pred HHHHHHHHHHHcCCe-EEEEECCCCCCc-eECCEEeeCCHHHHhhcCCCCEEEEecCH-HHHHHHHHH---HHH---CCC
Confidence 578889999988998 344444432100 0248888999999998 89999999995 555665542 222 22
Q ss_pred CEEEEcCCCCc-hHHHHHHHHHHhcCCceE
Q psy764 79 VIVIDSSTVDP-QVPQTLSNLAREKQITFL 107 (286)
Q Consensus 79 ~ivid~st~~p-~~~~~~~~~~~~~g~~~~ 107 (286)
+.+|..++..+ ...+++.+..++.|+.++
T Consensus 90 ~~vVi~t~G~~~~~~~~l~~~a~~~gi~vi 119 (288)
T 1oi7_A 90 PLIVLITEGIPTLDMVRAVEEIKALGSRLI 119 (288)
T ss_dssp SEEEECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred CEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 33444555444 445677777778888665
|
| >1oju_A MDH, malate dehydrogenase; hyperthermophilic, oxidoreductase; HET: ENA; 2.79A {Archaeoglobus fulgidus} PDB: 1ojs_A* 2x0i_A* 2x0j_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.003 Score=53.77 Aligned_cols=56 Identities=16% Similarity=0.144 Sum_probs=42.7
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHH----HHH----c--C--CcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQT----LAK----E--G--ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~----~--g--~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||+++|..|+.+|+ +|.+||+++++++. +.. . . +..+++ .+++++||+||++.+.+
T Consensus 11 vG~~la~~l~~~~~~~~v~L~D~~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDiVViaag~~ 80 (294)
T 1oju_A 11 VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGAD-YSLLKGSEIIVVTAGLA 80 (294)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESC-GGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEECChHHHHHHHHHHHhhhhhcCCCCEEEEeCC-HHHhCCCCEEEECCCCC
Confidence 78999999999998 89999999987641 211 1 1 233446 78899999999998654
|
| >1ur5_A Malate dehydrogenase; oxidoreductase, tricarboxylic acid cycle; HET: NAD; 1.75A {Chloroflexus aurantiacus} SCOP: c.2.1.5 d.162.1.1 PDB: 1uxg_A* 1guy_A* 1uxk_A* 1uxh_A* 1uxj_A* 1uxi_A* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0086 Score=51.34 Aligned_cols=56 Identities=14% Similarity=0.159 Sum_probs=42.2
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHH---c-------C--CcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAK---E-------G--ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~---~-------g--~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||++++..|+..|+ +|.++|+++++++.... . . +..+.+. +++++||+||++++.|
T Consensus 13 vG~~~a~~la~~g~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~a~g~p 81 (309)
T 1ur5_A 13 VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNY-ADTANSDVIVVTSGAP 81 (309)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCG-GGGTTCSEEEECCCC-
T ss_pred HHHHHHHHHHHCCCCeEEEEeCCccHHHHHHHhHHHhHhhcCCCeEEEECCCH-HHHCCCCEEEEcCCCC
Confidence 79999999999997 99999999877654221 1 1 2233566 7789999999998655
|
| >1edz_A 5,10-methylenetetrahydrofolate dehydrogenase; nucleotide-binding domain, monofunctional, oxidoreductase; 2.80A {Saccharomyces cerevisiae} SCOP: c.2.1.7 c.58.1.2 PDB: 1ee9_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00057 Score=58.71 Aligned_cols=78 Identities=15% Similarity=0.190 Sum_probs=54.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH----HHHHHHcCCcc-----c--CCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA----SQTLAKEGANM-----A--LSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~----~~~l~~~g~~~-----~--~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
+|..+|+.|...|.+|++.||+..+ .+.+...-... + .++.+.++++|+||.+++.+. -++.
T Consensus 189 VG~~~A~~L~~~gAtVtv~nR~~~~l~~ra~~la~~~~~~t~~~~t~~~~L~e~l~~ADIVIsAtg~p~---~vI~---- 261 (320)
T 1edz_A 189 VGRPLAALLANDGATVYSVDVNNIQKFTRGESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSEN---YKFP---- 261 (320)
T ss_dssp THHHHHHHHHTTSCEEEEECSSEEEEEESCCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTT---CCBC----
T ss_pred hHHHHHHHHHHCCCEEEEEeCchHHHHhHHHHHhhhcccccccccccHhHHHHHhccCCEEEECCCCCc---ceeC----
Confidence 6899999999999999999998433 22221110111 2 468889999999999999753 1232
Q ss_pred ccccCCCCCEEEEcCCC
Q psy764 71 ILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 71 l~~~l~~g~ivid~st~ 87 (286)
.+.+++|.+|||.+..
T Consensus 262 -~e~vk~GavVIDVgi~ 277 (320)
T 1edz_A 262 -TEYIKEGAVCINFACT 277 (320)
T ss_dssp -TTTSCTTEEEEECSSS
T ss_pred -HHHcCCCeEEEEcCCC
Confidence 1236789999999764
|
| >3ff4_A Uncharacterized protein; structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0021 Score=47.13 Aligned_cols=92 Identities=17% Similarity=0.243 Sum_probs=65.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+.++|.+.||+|+-.|...+.+ .|.....|+.|+-+ .|++++++| ++.+.+++++ +.+. ....+|
T Consensus 19 ~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~dlp~-vDlavi~~p-~~~v~~~v~e---~~~~-g~k~v~ 87 (122)
T 3ff4_A 19 YAYLAAERLKSHGHEFIPVGRKKGEV-----LGKTIINERPVIEG-VDTVTLYIN-PQNQLSEYNY---ILSL-KPKRVI 87 (122)
T ss_dssp HHHHHHHHHHHHTCCEEEESSSCSEE-----TTEECBCSCCCCTT-CCEEEECSC-HHHHGGGHHH---HHHH-CCSEEE
T ss_pred HHHHHHHHHHHCCCeEEEECCCCCcC-----CCeeccCChHHCCC-CCEEEEEeC-HHHHHHHHHH---HHhc-CCCEEE
Confidence 46678899999999999888775533 47788889988888 999999999 4677776654 3321 222455
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+. .... .+++.+.+++.|++++.
T Consensus 88 ~~--~G~~--~~e~~~~a~~~Girvv~ 110 (122)
T 3ff4_A 88 FN--PGTE--NEELEEILSENGIEPVI 110 (122)
T ss_dssp EC--TTCC--CHHHHHHHHHTTCEEEE
T ss_pred EC--CCCC--hHHHHHHHHHcCCeEEC
Confidence 43 2222 25677778889999883
|
| >1a4i_A Methylenetetrahydrofolate dehydrogenase / methenyltetrahydrofolate cyclohydrolase...; THF, bifunctional, oxidoreductase; HET: NDP; 1.50A {Homo sapiens} SCOP: c.2.1.7 c.58.1.2 PDB: 1dia_A* 1dib_A* 1dig_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0047 Score=52.33 Aligned_cols=64 Identities=16% Similarity=0.191 Sum_probs=48.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+|..|...|.+|++.+++ +.++.+.++++|+||.+++.+. ++. .+.+++|.+|
T Consensus 177 VG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~----~I~-----~~~vk~GavV 233 (301)
T 1a4i_A 177 VGAPMHDLLLWNNATVTTCHSK--------------TAHLDEEVNKGDILVVATGQPE----MVK-----GEWIKPGAIV 233 (301)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTT----CBC-----GGGSCTTCEE
T ss_pred HHHHHHHHHHhCCCeEEEEECC--------------cccHHHHhccCCEEEECCCCcc----cCC-----HHHcCCCcEE
Confidence 5777788787777777777644 3578899999999999999864 222 2346789999
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
||.+...
T Consensus 234 IDVgi~~ 240 (301)
T 1a4i_A 234 IDCGINY 240 (301)
T ss_dssp EECCCBC
T ss_pred EEccCCC
Confidence 9998753
|
| >1u8x_X Maltose-6'-phosphate glucosidase; structural genomics, PSI, protein structure initiative, MCSG glucosidase, NAD-dependent; HET: G6P NAD; 2.05A {Bacillus subtilis} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0054 Score=55.67 Aligned_cols=56 Identities=9% Similarity=0.185 Sum_probs=42.3
Q ss_pred cHHHHHHHHhC-----CCcEEEEcCCchHHHHHHH--------c----CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 3 STLKLFFLQFQ-----GHDVIVYDKNTDASQTLAK--------E----GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 3 G~~lA~~L~~~-----G~~V~~~dr~~~~~~~l~~--------~----g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
|++++..|+++ +++|.+||+++++++...+ . .+..+.++.+++++||+||+++|.+
T Consensus 41 ~~ala~~L~~~~~~l~~~eV~L~Di~~e~~~~~~~~~~~~l~~~~~~~~I~~t~D~~eal~~AD~VViaag~~ 113 (472)
T 1u8x_X 41 TPGIVLMLLDHLEEFPIRKLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRVG 113 (472)
T ss_dssp HHHHHHHHHHTTTTSCEEEEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEECCCTT
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCCEEEEECCHHHHHcCCCEEEEcCCCc
Confidence 44577778887 6789999999987655322 1 1344568889999999999999974
|
| >3tnl_A Shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD SKM; 1.45A {Listeria monocytogenes} PDB: 3toz_A* | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0077 Score=51.73 Aligned_cols=102 Identities=12% Similarity=0.159 Sum_probs=64.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCC---chHHHHHHHc-----CC--cc--cCC---HHHHhhcCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKN---TDASQTLAKE-----GA--NM--ALS---LSTLASGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~---~~~~~~l~~~-----g~--~~--~~s---~~e~~~~adivi~~v~~~~~~~~v~ 65 (286)
+|.+++..|++.|. +|+++||+ .++++++.+. +. .. .++ +.+.+.++|+||-|.|-.-. ...
T Consensus 165 ~g~aia~~L~~~Ga~~V~i~nR~~~~~~~a~~la~~~~~~~~~~~~~~~~~~~~~l~~~l~~aDiIINaTp~Gm~-~~~- 242 (315)
T 3tnl_A 165 AATAICIQAALDGVKEISIFNRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMK-PFE- 242 (315)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTTST-TST-
T ss_pred HHHHHHHHHHHCCCCEEEEEECCCchHHHHHHHHHHhhhhcCCceEEeccchHHHHHhhhcCCCEEEECccCCCC-CCC-
Confidence 57889999999998 89999999 8888777542 21 11 122 45667899999999984311 000
Q ss_pred cCCccc--cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 66 DGSDGI--LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 66 ~~~~~l--~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.. ..+ ...++++.+|+|+.-. |..+. +.+..+++|+..++
T Consensus 243 ~~-~p~~~~~~l~~~~~V~DlvY~-P~~T~-ll~~A~~~G~~~~~ 284 (315)
T 3tnl_A 243 GE-TLLPSADMLRPELIVSDVVYK-PTKTR-LLEIAEEQGCQTLN 284 (315)
T ss_dssp TC-CSCCCGGGCCTTCEEEESCCS-SSSCH-HHHHHHHTTCEEEC
T ss_pred CC-CCCCcHHHcCCCCEEEEeccC-CCCCH-HHHHHHHCCCeEeC
Confidence 00 001 2346788899998654 43332 33455677876654
|
| >1b0a_A Protein (fold bifunctional protein); folate, dehydrogenase, cyclcohydrolase, channeling, oxidoreductase,hydrolase; 2.56A {Escherichia coli K12} SCOP: c.2.1.7 c.58.1.2 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0067 Score=51.05 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=48.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.++|..|...|.+|++.+++. .++.+.++++|+||.+++.+. ++. .+.+++|.+|
T Consensus 171 VG~p~A~lL~~~gAtVtv~hs~t--------------~~L~~~~~~ADIVI~Avg~p~----lI~-----~~~vk~GavV 227 (288)
T 1b0a_A 171 VGRPMSMELLLAGCTTTVTHRFT--------------KNLRHHVENADLLIVAVGKPG----FIP-----GDWIKEGAIV 227 (288)
T ss_dssp THHHHHHHHHTTTCEEEEECSSC--------------SCHHHHHHHCSEEEECSCCTT----CBC-----TTTSCTTCEE
T ss_pred HHHHHHHHHHHCCCeEEEEeCCc--------------hhHHHHhccCCEEEECCCCcC----cCC-----HHHcCCCcEE
Confidence 57888888888888888886543 568889999999999999764 222 1236789999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.+..
T Consensus 228 IDVgi~ 233 (288)
T 1b0a_A 228 IDVGIN 233 (288)
T ss_dssp EECCCE
T ss_pred EEccCC
Confidence 998764
|
| >3l07_A Bifunctional protein fold; structural genomics, IDP01849, methylenetetrahydrofolate dehydrogenase; 1.88A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0054 Score=51.57 Aligned_cols=63 Identities=16% Similarity=0.145 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.++|..|.+.|.+|++.+++ +.++++.++++|+||.+++.+.- +. .+.+++|.+|
T Consensus 173 VG~p~A~lL~~~gAtVtv~hs~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~-----~~~vk~GavV 229 (285)
T 3l07_A 173 VGKPVSQLLLNAKATVTTCHRF--------------TTDLKSHTTKADILIVAVGKPNF----IT-----ADMVKEGAVV 229 (285)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSSHHHHHTTCSEEEECCCCTTC----BC-----GGGSCTTCEE
T ss_pred hHHHHHHHHHHCCCeEEEEeCC--------------chhHHHhcccCCEEEECCCCCCC----CC-----HHHcCCCcEE
Confidence 5778888888888788877754 24688899999999999996532 21 2346889999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.+..
T Consensus 230 IDvgi~ 235 (285)
T 3l07_A 230 IDVGIN 235 (285)
T ss_dssp EECCCE
T ss_pred EEeccc
Confidence 998754
|
| >2yv2_A Succinyl-COA synthetase alpha chain; COA-binding domain, ligase, structural genomics, NPPSFA; 2.20A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0027 Score=54.15 Aligned_cols=96 Identities=18% Similarity=0.148 Sum_probs=63.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHH-HHHHHcCCcccCCHHHHhh--c-CcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDAS-QTLAKEGANMALSLSTLAS--G-AEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~-~~l~~~g~~~~~s~~e~~~--~-adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
+|..++++|.+.|++ .+|..+|.+. +. -.|..+++|++|+.+ . .|++++++|.+ .+.+++.. ..+ .
T Consensus 25 ~G~~~~~~l~~~g~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~~~DvaIi~vp~~-~~~~~v~e---a~~---~ 94 (297)
T 2yv2_A 25 EGSFHAKAMLEYGTK-VVAGVTPGKGGSE--VHGVPVYDSVKEALAEHPEINTSIVFVPAP-FAPDAVYE---AVD---A 94 (297)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHCTTCCEEEECCCGG-GHHHHHHH---HHH---T
T ss_pred HHHHHHHHHHhCCCc-EEEEeCCCCCCce--ECCEeeeCCHHHHhhcCCCCCEEEEecCHH-HHHHHHHH---HHH---C
Confidence 577788999988998 5555555432 11 148889999999987 5 99999999964 55555442 222 2
Q ss_pred C-CEEEEcCCCCc-hHHHHHHHHHHhcCCceE
Q psy764 78 G-VIVIDSSTVDP-QVPQTLSNLAREKQITFL 107 (286)
Q Consensus 78 g-~ivid~st~~p-~~~~~~~~~~~~~g~~~~ 107 (286)
| +.+|..|+..+ ...+++.+.+++.|++++
T Consensus 95 Gi~~vVi~t~G~~~~~~~~l~~~A~~~gi~vi 126 (297)
T 2yv2_A 95 GIRLVVVITEGIPVHDTMRFVNYARQKGATII 126 (297)
T ss_dssp TCSEEEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHcCCEEE
Confidence 3 32444455444 456677777888887665
|
| >1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0031 Score=56.24 Aligned_cols=58 Identities=17% Similarity=0.181 Sum_probs=46.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHH-cCCcc--cCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAK-EGANM--ALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~-~g~~~--~~s~~e~~~~adivi~~v~~~~ 59 (286)
||..+++.|...|. +|+++||++++.+.+.+ .|+.. .+++.+.+.++|+||.|+|.+.
T Consensus 178 iG~~~a~~l~~~G~~~V~v~~r~~~ra~~la~~~g~~~~~~~~l~~~l~~aDvVi~at~~~~ 239 (404)
T 1gpj_A 178 MGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH 239 (404)
T ss_dssp HHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred HHHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHcCCceecHHhHHHHhcCCCEEEEccCCCC
Confidence 78899999999998 89999999998866643 46543 2467788889999999998653
|
| >3qy9_A DHPR, dihydrodipicolinate reductase; rossmann fold, NADH, NADPH, oxidoreductase; 1.80A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.019 Score=47.39 Aligned_cols=95 Identities=12% Similarity=0.194 Sum_probs=60.3
Q ss_pred ccHHHHHHHHhCCCcEE-EEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVI-VYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||+.+++.+.+.++++. ++||+++. ..|+.+++++.++. ++|++|-+.+ |..+.+.+. +..|.-
T Consensus 14 MG~~i~~~l~~~~~eLva~~d~~~~~-----~~gv~v~~dl~~l~-~~DVvIDft~-p~a~~~~~~--------l~~g~~ 78 (243)
T 3qy9_A 14 MNQRVARLAEEKGHEIVGVIENTPKA-----TTPYQQYQHIADVK-GADVAIDFSN-PNLLFPLLD--------EDFHLP 78 (243)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSSCC-------CCSCBCSCTTTCT-TCSEEEECSC-HHHHHHHHT--------SCCCCC
T ss_pred HHHHHHHHHHhCCCEEEEEEecCccc-----cCCCceeCCHHHHh-CCCEEEEeCC-hHHHHHHHH--------HhcCCc
Confidence 79999999998877655 47988763 46888889999988 9999885544 455555542 456666
Q ss_pred EEEcCCCCc-hHHHHHHHHHHhcCCceEeccCCC
Q psy764 81 VIDSSTVDP-QVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 81 vid~st~~p-~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
+|..+|... ....++.+..+ + ..++-+|.+.
T Consensus 79 vVigTTG~s~e~~~~l~~aa~-~-~~v~~a~N~S 110 (243)
T 3qy9_A 79 LVVATTGEKEKLLNKLDELSQ-N-MPVFFSANMS 110 (243)
T ss_dssp EEECCCSSHHHHHHHHHHHTT-T-SEEEECSSCC
T ss_pred eEeCCCCCCHHHHHHHHHHHh-c-CCEEEECCcc
Confidence 666666543 33334443322 2 3344455443
|
| >2p4q_A 6-phosphogluconate dehydrogenase, decarboxylating; rossmann fold, oxidoreductase; HET: FLC; 2.37A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.021 Score=52.29 Aligned_cols=106 Identities=15% Similarity=0.104 Sum_probs=77.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcc-CCCcccccccCCC----CCccccCCCCC
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVK------LGMNAKLLSDVINTS-SGRCWSSEVYNPV----PGVLSNVPASN 223 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gl~~~~~~~~~~~~-~~~s~~~~~~~~~----~~~~~~~~~~~ 223 (286)
+.++.+|+++|.+.+.++.+.+|.+.+.++ .++|...+.++.+.+ .-+||+++..... |.+ .+.+
T Consensus 322 ~~~~~~~~v~~al~~~~i~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l-~~l~--- 397 (497)
T 2p4q_A 322 DREQFVDDLEQALYASKIISYAQGFMLIREAAATYGWKLNNPAIALMWRGGCIIRSVFLGQITKAYREEPDL-ENLL--- 397 (497)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSSSTTCBHHHHHHHHHHHHCTTC-SCGG---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCCchHHHHHHHHHHHHhcCCCh-hhhh---
Confidence 478999999999999999999999999998 789999999999876 3667766532210 110 0000
Q ss_pred CCCCCcc--chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 224 NYNGGFK--ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 224 ~~~~~f~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
+++-|. +.......+.+...|-+.|+|.|.+.++...|+.-
T Consensus 398 -~~~~f~~~~~~~~~~~r~~v~~a~~~gvp~P~~s~aL~~~~~~ 440 (497)
T 2p4q_A 398 -FNKFFADAVTKAQSGWRKSIALATTYGIPTPAFSTALSFYDGY 440 (497)
T ss_dssp -GSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 112221 23334468889999999999999999999977643
|
| >3p2o_A Bifunctional protein fold; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta-alpha sandwich; HET: NAD; 2.23A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.006 Score=51.31 Aligned_cols=63 Identities=24% Similarity=0.202 Sum_probs=47.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.++|..|.+.|.+|++.+++ +.++++.++++|+||.+++.+.- +. .+.+++|.+|
T Consensus 172 VG~p~A~lL~~~gAtVtv~h~~--------------t~~L~~~~~~ADIVI~Avg~p~~----I~-----~~~vk~GavV 228 (285)
T 3p2o_A 172 VGRPMATMLLNAGATVSVCHIK--------------TKDLSLYTRQADLIIVAAGCVNL----LR-----SDMVKEGVIV 228 (285)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHTTCSEEEECSSCTTC----BC-----GGGSCTTEEE
T ss_pred HHHHHHHHHHHCCCeEEEEeCC--------------chhHHHHhhcCCEEEECCCCCCc----CC-----HHHcCCCeEE
Confidence 5777888888777778877754 24688899999999999996532 21 2346899999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.+..
T Consensus 229 IDVgi~ 234 (285)
T 3p2o_A 229 VDVGIN 234 (285)
T ss_dssp EECCCE
T ss_pred EEeccC
Confidence 998754
|
| >4ina_A Saccharopine dehydrogenase; structural genomics, PSI-biology, northeast structural genom consortium, NESG, oxidoreductas; 2.49A {Wolinella succinogenes} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0029 Score=56.41 Aligned_cols=101 Identities=13% Similarity=0.207 Sum_probs=63.4
Q ss_pred ccHHHHHHHHhCCC---cEEEEcCCchHHHHHHHc-------CCc-----c--cCCHHHHhhc--CcEEEEecCChhHHH
Q psy764 2 ISTLKLFFLQFQGH---DVIVYDKNTDASQTLAKE-------GAN-----M--ALSLSTLASG--AEFIISMLPASQDVL 62 (286)
Q Consensus 2 ~G~~lA~~L~~~G~---~V~~~dr~~~~~~~l~~~-------g~~-----~--~~s~~e~~~~--adivi~~v~~~~~~~ 62 (286)
||..+++.|++.|. +|.+++|++++.+.+.+. .+. + .+++.+++++ +|+||.|.|.... .
T Consensus 12 iG~~ia~~L~~~g~~~~~V~v~~r~~~~~~~la~~l~~~~~~~~~~~~~D~~d~~~l~~~l~~~~~DvVin~ag~~~~-~ 90 (405)
T 4ina_A 12 VGGVVAHKMAMNREVFSHITLASRTLSKCQEIAQSIKAKGYGEIDITTVDADSIEELVALINEVKPQIVLNIALPYQD-L 90 (405)
T ss_dssp HHHHHHHHHHTCTTTCCEEEEEESCHHHHHHHHHHHHHTTCCCCEEEECCTTCHHHHHHHHHHHCCSEEEECSCGGGH-H
T ss_pred HHHHHHHHHHhCCCCceEEEEEECCHHHHHHHHHHhhhhcCCceEEEEecCCCHHHHHHHHHhhCCCEEEECCCcccC-h
Confidence 68999999999983 899999999998877542 121 1 2345666776 8999999885432 2
Q ss_pred HHhcCCccccccCCCCCEEEEcCCCCch--------HHHHHHHHHHhcCCceEec
Q psy764 63 DAYDGSDGILKHAKPGVIVIDSSTVDPQ--------VPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 63 ~v~~~~~~l~~~l~~g~ivid~st~~p~--------~~~~~~~~~~~~g~~~~~~ 109 (286)
.+.. ..+..|..++|++...+. ...++.+.+++.|+.++..
T Consensus 91 ~v~~------a~l~~g~~vvD~a~~~~~~~~~~~~~~~~~l~~~a~~aG~~~i~g 139 (405)
T 4ina_A 91 TIME------ACLRTGVPYLDTANYEHPDLAKFEYKEQWAFHDRYKEKGVMALLG 139 (405)
T ss_dssp HHHH------HHHHHTCCEEESSCCBCTTCSCBCSHHHHTTHHHHHHHTCEEEEC
T ss_pred HHHH------HHHHhCCCEEEecCCCCcccchhhhHHHHHHHHHHHHhCCEEEEc
Confidence 3322 223456677776543322 1124455556666665543
|
| >2iz1_A 6-phosphogluconate dehydrogenase, decarboxylating; pentose shunt, oxidoreductase, gluconate utilization; HET: ATR RES P33; 2.30A {Lactococcus lactis} PDB: 2iz0_A* 2iyp_A* 2iyo_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.018 Score=52.41 Aligned_cols=106 Identities=12% Similarity=0.050 Sum_probs=77.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcc-CCCcccccccCCC----CCccccCCCCC
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVK------LGMNAKLLSDVINTS-SGRCWSSEVYNPV----PGVLSNVPASN 223 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gl~~~~~~~~~~~~-~~~s~~~~~~~~~----~~~~~~~~~~~ 223 (286)
+.++.+|+++|.+.+.++.+.+|.+.+.++ .++|...+.++.+.+ .-+||+++..... |.+ .+.+
T Consensus 317 ~~~~~~~~v~~al~~~~~~~yaqGf~ll~~a~~~~~~~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l-~~l~--- 392 (474)
T 2iz1_A 317 DKKEVIEKIRKALYFSKIMSYAQGFAQLRKASEEFDWDLPYGTIAQIWRAGCIIRAEFLQNITDAFDKDSEL-ENLL--- 392 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSCTTCBTTHHHHHHHHHHCTTC-CCGG---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccchHHHHHHHHHHHHHhcCCCh-hhhh---
Confidence 789999999999999999999999999997 689999999998876 3566766532210 110 0000
Q ss_pred CCCCCcc--chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 224 NYNGGFK--ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 224 ~~~~~f~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
++|-|. +.......+.+...|-+.|+|.|.+.++...|+.-
T Consensus 393 -~~~~~~~~~~~~~~~~r~~v~~a~~~~~p~p~~s~al~~~~~~ 435 (474)
T 2iz1_A 393 -LDDYFVDITKRYQEAVRDVVSLAVQAGTPIPTFTSAISYYDSY 435 (474)
T ss_dssp -GSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 112222 23334568889999999999999999999977653
|
| >2zyd_A 6-phosphogluconate dehydrogenase, decarboxylating; NADP, pentose phosphate pathway, oxidoreductase, 6-phosphogl dehydrogenase; HET: GLO; 1.50A {Escherichia coli} PDB: 2zya_A* 3fwn_A* 2zyg_A 2w8z_A* 2w90_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.015 Score=52.96 Aligned_cols=106 Identities=10% Similarity=0.057 Sum_probs=78.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHcc-CCCcccccccCCC----CCccccCCCCC
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVK------LGMNAKLLSDVINTS-SGRCWSSEVYNPV----PGVLSNVPASN 223 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gl~~~~~~~~~~~~-~~~s~~~~~~~~~----~~~~~~~~~~~ 223 (286)
+.++.+|++.|.+.+..+.+.+|.+.+.++ .++|...+.++.+.+ .-+||+++..... |.+ .+.+
T Consensus 325 ~~~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l-~~l~--- 400 (480)
T 2zyd_A 325 DKAEFIEKVRRALYLGKIVSYAQGFSQLRAASEEYNWDLNYGEIAKIFRAGCIIRAQFLQKITDACAENPQI-ANLL--- 400 (480)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSSSSTTCBTHHHHHHHHHHHCTTC-SCGG---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCCh-Hhhh---
Confidence 789999999999999999999999999998 789999999998876 3567766532210 110 0000
Q ss_pred CCCCCcc--chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Q psy764 224 NYNGGFK--ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRL 265 (286)
Q Consensus 224 ~~~~~f~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a 265 (286)
++|-|. +.......+.+...|-+.|+|.|.+.++...|+.-
T Consensus 401 -~~~~f~~~~~~~~~~~r~~v~~a~~~gvp~p~~s~al~~~~~~ 443 (480)
T 2zyd_A 401 -LAPYFKQIADDYQQALRDVVAYAVQNGIPVPTFSAAVAYYDSY 443 (480)
T ss_dssp -GSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH
T ss_pred -cCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhc
Confidence 112221 23334468889999999999999999999987754
|
| >3pqe_A L-LDH, L-lactate dehydrogenase; FBP, oxidoreductase; 2.20A {Bacillus subtilis} PDB: 3pqf_A* 3pqd_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0061 Score=52.67 Aligned_cols=57 Identities=18% Similarity=0.188 Sum_probs=43.5
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHH----HHHc------CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQT----LAKE------GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~~------g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||+++|..|+..|+ +|.++|+++++++. +... +++...+..+++++||+||++.+.+
T Consensus 16 vG~~~a~~l~~~~~~~~l~l~D~~~~k~~g~a~DL~~~~~~~~~~v~i~~~~~~a~~~aDvVvi~ag~p 84 (326)
T 3pqe_A 16 VGSSYAFALINQGITDELVVIDVNKEKAMGDVMDLNHGKAFAPQPVKTSYGTYEDCKDADIVCICAGAN 84 (326)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHTGGGSSSCCEEEEECGGGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCceEEEEecchHHHHHHHHHHHhccccccCCeEEEeCcHHHhCCCCEEEEecccC
Confidence 79999999999987 89999999988765 4332 2233344457889999999998654
|
| >3gdo_A Uncharacterized oxidoreductase YVAA; structural genomics, putative oxidoreductase YVAA, oxidoredu PSI-2, protein structure initiative; 2.03A {Bacillus subtilis subsp} PDB: 3gfg_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0088 Score=52.30 Aligned_cols=93 Identities=16% Similarity=0.225 Sum_probs=64.7
Q ss_pred HHHHHHhC-CCcE-EEEcCCchHHHHHHHc-CCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC-
Q psy764 6 KLFFLQFQ-GHDV-IVYDKNTDASQTLAKE-GANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV- 79 (286)
Q Consensus 6 lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~- 79 (286)
.+..|.+. +++| .++|+++++.. ... +...++|++++++ +.|+|++|+|+....+.+.. .+..|+
T Consensus 21 ~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~-------al~aGkh 91 (358)
T 3gdo_A 21 HGPLLDVLDEYQISKIMTSRTEEVK--RDFPDAEVVHELEEITNDPAIELVIVTTPSGLHYEHTMA-------CIQAGKH 91 (358)
T ss_dssp THHHHTTCTTEEEEEEECSCHHHHH--HHCTTSEEESSTHHHHTCTTCCEEEECSCTTTHHHHHHH-------HHHTTCE
T ss_pred HHHHHhhCCCeEEEEEEcCCHHHHH--hhCCCCceECCHHHHhcCCCCCEEEEcCCcHHHHHHHHH-------HHHcCCe
Confidence 44555544 5665 47799987732 223 6788899999997 78999999998766655543 244565
Q ss_pred EEEEcC-CCCchHHHHHHHHHHhcCCceE
Q psy764 80 IVIDSS-TVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 80 ivid~s-t~~p~~~~~~~~~~~~~g~~~~ 107 (286)
++++.- +.+..+.+++.+..++.|..+.
T Consensus 92 Vl~EKPla~~~~e~~~l~~~a~~~g~~~~ 120 (358)
T 3gdo_A 92 VVMEKPMTATAEEGETLKRAADEKGVLLS 120 (358)
T ss_dssp EEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred EEEecCCcCCHHHHHHHHHHHHHcCCeEE
Confidence 455542 5678888888888888776554
|
| >2c2x_A Methylenetetrahydrofolate dehydrogenase- methenyltetrahydrofolate cyclohydrolase; NADP; 2.0A {Mycobacterium tuberculosis} PDB: 2c2y_A | Back alignment and structure |
|---|
Probab=96.26 E-value=0.01 Score=49.71 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=48.0
Q ss_pred ccHHHHHHHHhC--CCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQ--GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+|.++|..|.+. |.+|++.+++. .++.+.++++|+||.+++.+. ++. .+.+++|.
T Consensus 170 VG~p~A~lL~~~g~~atVtv~h~~t--------------~~L~~~~~~ADIVI~Avg~p~----~I~-----~~~vk~Ga 226 (281)
T 2c2x_A 170 VGRPLGLLLTRRSENATVTLCHTGT--------------RDLPALTRQADIVVAAVGVAH----LLT-----ADMVRPGA 226 (281)
T ss_dssp THHHHHHHHTSTTTCCEEEEECTTC--------------SCHHHHHTTCSEEEECSCCTT----CBC-----GGGSCTTC
T ss_pred HHHHHHHHHhcCCCCCEEEEEECch--------------hHHHHHHhhCCEEEECCCCCc----ccC-----HHHcCCCc
Confidence 578888888877 67788887554 578889999999999999764 222 23467899
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
+|||.+..
T Consensus 227 vVIDVgi~ 234 (281)
T 2c2x_A 227 AVIDVGVS 234 (281)
T ss_dssp EEEECCEE
T ss_pred EEEEccCC
Confidence 99998764
|
| >1y6j_A L-lactate dehydrogenase; southeast collaboratory for structural genomics, secsg, protein struc initiative, PSI, oxidoreductase; 3.01A {Clostridium thermocellum} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=96.16 E-value=0.011 Score=51.00 Aligned_cols=91 Identities=9% Similarity=0.122 Sum_probs=54.3
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHH-H--cC------CcccCCHHHHhhcCcEEEEecCChhH----------
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLA-K--EG------ANMALSLSTLASGAEFIISMLPASQD---------- 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~-~--~g------~~~~~s~~e~~~~adivi~~v~~~~~---------- 60 (286)
+|++++..|+..|+ +|.++|+++++++... + .+ .++..+..+++++||+||++.+.+..
T Consensus 18 vG~~~a~~l~~~~~~~ev~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~~g~p~k~g~~r~dl~~ 97 (318)
T 1y6j_A 18 VGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGANRKPGETRLDLAK 97 (318)
T ss_dssp HHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC------CHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHhHHhcCCeEEEECCHHHhCCCCEEEEcCCCCCCCCcCHHHHHH
Confidence 68999999999998 8999999987654321 1 12 11222346678999999999987642
Q ss_pred -----HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHH
Q psy764 61 -----VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSN 97 (286)
Q Consensus 61 -----~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~ 97 (286)
++++... +.+. .++.+|+.. |......-++..
T Consensus 98 ~n~~i~~~i~~~---i~~~-~p~a~viv~-tNPv~~~~~~~~ 134 (318)
T 1y6j_A 98 KNVMIAKEVTQN---IMKY-YNHGVILVV-SNPVDIITYMIQ 134 (318)
T ss_dssp HHHHHHHHHHHH---HHHH-CCSCEEEEC-SSSHHHHHHHHH
T ss_pred hhHHHHHHHHHH---HHHh-CCCcEEEEe-cCcHHHHHHHHH
Confidence 2344432 4444 467777775 555555444443
|
| >3oqb_A Oxidoreductase; structural genomics, protein structure INI NEW YORK structural genomix research consortium, NYSGXRC, PSI-2; 2.60A {Bradyrhizobium japonicum} | Back alignment and structure |
|---|
Probab=96.15 E-value=0.02 Score=50.41 Aligned_cols=84 Identities=12% Similarity=0.080 Sum_probs=61.4
Q ss_pred EEEcCCchHHHHHHH-cCC-cccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcC--CCCchH
Q psy764 18 IVYDKNTDASQTLAK-EGA-NMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSS--TVDPQV 91 (286)
Q Consensus 18 ~~~dr~~~~~~~l~~-~g~-~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~s--t~~p~~ 91 (286)
.++||++++++.+.+ .|+ ..++|+++++++ .|+|++|+|+....+.+.. .+..|+-|+--- +.+...
T Consensus 50 av~~~~~~~a~~~a~~~~~~~~~~~~~~ll~~~~iD~V~i~tp~~~h~~~~~~-------al~~Gk~V~~EKP~a~~~~~ 122 (383)
T 3oqb_A 50 ILVGRSAEKVEALAKRFNIARWTTDLDAALADKNDTMFFDAATTQARPGLLTQ-------AINAGKHVYCEKPIATNFEE 122 (383)
T ss_dssp EEECSSSHHHHHHHHHTTCCCEESCHHHHHHCSSCCEEEECSCSSSSHHHHHH-------HHTTTCEEEECSCSCSSHHH
T ss_pred EEEcCCHHHHHHHHHHhCCCcccCCHHHHhcCCCCCEEEECCCchHHHHHHHH-------HHHCCCeEEEcCCCCCCHHH
Confidence 489999999988865 477 478999999975 8999999998655444432 345666555322 456778
Q ss_pred HHHHHHHHHhcCCceEe
Q psy764 92 PQTLSNLAREKQITFLD 108 (286)
Q Consensus 92 ~~~~~~~~~~~g~~~~~ 108 (286)
.+++.+..++.|..+.-
T Consensus 123 ~~~l~~~a~~~~~~~~v 139 (383)
T 3oqb_A 123 ALEVVKLANSKGVKHGT 139 (383)
T ss_dssp HHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHcCCeEEE
Confidence 88888888888876554
|
| >3t4e_A Quinate/shikimate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 1.95A {Salmonella enterica subsp} PDB: 1npd_A* 1o9b_A* 1vi2_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.014 Score=49.99 Aligned_cols=101 Identities=11% Similarity=0.199 Sum_probs=64.8
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCC---chHHHHHHHc-----CCc--c--cCCH---HHHhhcCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKN---TDASQTLAKE-----GAN--M--ALSL---STLASGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~---~~~~~~l~~~-----g~~--~--~~s~---~e~~~~adivi~~v~~~~~~~~v~ 65 (286)
+|.+++..|++.|. +|+++||+ .++++++.+. +.. . ..+. .+.+.++|+||-|+|..-. ..-
T Consensus 159 aaraia~~L~~~G~~~v~v~nRt~~~~~~a~~la~~~~~~~~~~v~~~~~~~l~~~~~~l~~~DiIINaTp~Gm~--~~~ 236 (312)
T 3t4e_A 159 AATAIGAQAAIEGIKEIKLFNRKDDFFEKAVAFAKRVNENTDCVVTVTDLADQHAFTEALASADILTNGTKVGMK--PLE 236 (312)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECSSTHHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHHCSEEEECSSTTST--TST
T ss_pred HHHHHHHHHHHcCCCEEEEEECCCchHHHHHHHHHHhhhccCcceEEechHhhhhhHhhccCceEEEECCcCCCC--CCC
Confidence 46788999999998 89999999 7777776542 221 1 2233 5667899999999986421 100
Q ss_pred cCCccc---cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 66 DGSDGI---LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 66 ~~~~~l---~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
. ..+ ...+.++.+|+|+.-. |..+. +.+..+++|+..++
T Consensus 237 ~--~~~~~~~~~l~~~~~v~D~vY~-P~~T~-ll~~A~~~G~~~~~ 278 (312)
T 3t4e_A 237 N--ESLIGDVSLLRPELLVTECVYN-PHMTK-LLQQAQQAGCKTID 278 (312)
T ss_dssp T--CCSCCCGGGSCTTCEEEECCCS-SSSCH-HHHHHHHTTCEEEC
T ss_pred C--CcccCCHHHcCCCCEEEEeccC-CCCCH-HHHHHHHCCCeEEC
Confidence 0 011 1346788999998654 43332 34455677876665
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.009 Score=48.67 Aligned_cols=55 Identities=16% Similarity=0.265 Sum_probs=41.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC-cc-----cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA-NM-----ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~-~~-----~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|++.|++|++.+|++++.+.+...++ .. .+++.+++.++|+||.+..
T Consensus 33 iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~D~vi~~ag 93 (236)
T 3e8x_A 33 VARYLLSELKNKGHEPVAMVRNEEQGPELRERGASDIVVANLEEDFSHAFASIDAVVFAAG 93 (236)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHTTCSEEEECCTTSCCGGGGTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCeEEEEECChHHHHHHHhCCCceEEEcccHHHHHHHHcCCCEEEECCC
Confidence 7999999999999999999999998888776554 22 1344555566666666654
|
| >2fp4_A Succinyl-COA ligase [GDP-forming] alpha-chain, mitochondrial; active site phosphohistidine residue; HET: NEP GTP; 2.08A {Sus scrofa} SCOP: c.2.1.8 c.23.4.1 PDB: 2fpg_A* 2fpi_A* 2fpp_A* 1euc_A* 1eud_A* | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0072 Score=51.70 Aligned_cols=97 Identities=12% Similarity=0.072 Sum_probs=65.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH-HHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ-TLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~-~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
+|...+++|.+.|++ .+|+.||.+.. + -.|..+..|++|+.+ ..|++++++|. ..+.+++.+ ..+. .-
T Consensus 26 ~G~~~~~~l~~~G~~-~v~~VnP~~~g~~--i~G~~vy~sl~el~~~~~vD~avI~vP~-~~~~~~~~e---~i~~-Gi- 96 (305)
T 2fp4_A 26 QGTFHSQQALEYGTN-LVGGTTPGKGGKT--HLGLPVFNTVKEAKEQTGATASVIYVPP-PFAAAAINE---AIDA-EV- 96 (305)
T ss_dssp HHHHHHHHHHHHTCE-EEEEECTTCTTCE--ETTEEEESSHHHHHHHHCCCEEEECCCH-HHHHHHHHH---HHHT-TC-
T ss_pred HHHHHHHHHHHCCCc-EEEEeCCCcCcce--ECCeeeechHHHhhhcCCCCEEEEecCH-HHHHHHHHH---HHHC-CC-
Confidence 367788999999998 45555554321 1 248888999999998 89999999995 455665543 2221 11
Q ss_pred CEEEEcCCCCc-hHHHHHHHHHHhc-CCceE
Q psy764 79 VIVIDSSTVDP-QVPQTLSNLAREK-QITFL 107 (286)
Q Consensus 79 ~ivid~st~~p-~~~~~~~~~~~~~-g~~~~ 107 (286)
+.++..+...+ ...+++.+.++++ |++++
T Consensus 97 ~~iv~~t~G~~~~~~~~l~~~a~~~~gi~li 127 (305)
T 2fp4_A 97 PLVVCITEGIPQQDMVRVKHRLLRQGKTRLI 127 (305)
T ss_dssp SEEEECCCCCCHHHHHHHHHHHTTCSSCEEE
T ss_pred CEEEEECCCCChHHHHHHHHHHHhcCCcEEE
Confidence 34455555544 3455777888888 88766
|
| >3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.0095 Score=52.16 Aligned_cols=93 Identities=16% Similarity=0.251 Sum_probs=65.0
Q ss_pred HHHHHHhC-CCcE-EEEcCCchHHHHHHHc-CCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCCCC-
Q psy764 6 KLFFLQFQ-GHDV-IVYDKNTDASQTLAKE-GANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPGV- 79 (286)
Q Consensus 6 lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~- 79 (286)
.+..|.+. +++| .++|++++++. .+. +...++|+++++++ .|+|++|+|+....+.+.. .+..|+
T Consensus 21 ~~~~l~~~~~~~l~av~d~~~~~~~--~~~~~~~~~~~~~~ll~~~~vD~V~i~tp~~~H~~~~~~-------al~aGkh 91 (362)
T 3fhl_A 21 HAPFISTNPHFELYKIVERSKELSK--ERYPQASIVRSFKELTEDPEIDLIVVNTPDNTHYEYAGM-------ALEAGKN 91 (362)
T ss_dssp THHHHHHCTTEEEEEEECSSCCGGG--TTCTTSEEESCSHHHHTCTTCCEEEECSCGGGHHHHHHH-------HHHTTCE
T ss_pred HHHHHhhCCCeEEEEEEcCCHHHHH--HhCCCCceECCHHHHhcCCCCCEEEEeCChHHHHHHHHH-------HHHCCCe
Confidence 44555554 5665 47899988742 223 67788999999976 8999999998766555543 234555
Q ss_pred EEEEcC-CCCchHHHHHHHHHHhcCCceE
Q psy764 80 IVIDSS-TVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 80 ivid~s-t~~p~~~~~~~~~~~~~g~~~~ 107 (286)
++++.- +.++.+++++.+..++.|..+.
T Consensus 92 Vl~EKP~a~~~~ea~~l~~~a~~~g~~~~ 120 (362)
T 3fhl_A 92 VVVEKPFTSTTKQGEELIALAKKKGLMLS 120 (362)
T ss_dssp EEEESSCCSSHHHHHHHHHHHHHHTCCEE
T ss_pred EEEecCCCCCHHHHHHHHHHHHHcCCEEE
Confidence 556543 5678888899888888776554
|
| >4a5o_A Bifunctional protein fold; oxidoreductase, hydrolase; 2.20A {Pseudomonas aeruginosa PAO1} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.01 Score=49.90 Aligned_cols=64 Identities=20% Similarity=0.174 Sum_probs=46.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.++|..|.+.|.+|++.++. +.++++.++++|+||.+++.+.- +. .+.+++|.+|
T Consensus 173 VG~plA~lL~~~gAtVtv~hs~--------------T~~L~~~~~~ADIVI~Avg~p~~----I~-----~~~vk~GavV 229 (286)
T 4a5o_A 173 VGRPMALELLLGGCTVTVTHRF--------------TRDLADHVSRADLVVVAAGKPGL----VK-----GEWIKEGAIV 229 (286)
T ss_dssp THHHHHHHHHHTTCEEEEECTT--------------CSCHHHHHHTCSEEEECCCCTTC----BC-----GGGSCTTCEE
T ss_pred hHHHHHHHHHHCCCeEEEEeCC--------------CcCHHHHhccCCEEEECCCCCCC----CC-----HHHcCCCeEE
Confidence 5677777777777777776643 24688899999999999996532 21 2346899999
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
||.+...
T Consensus 230 IDvgi~~ 236 (286)
T 4a5o_A 230 IDVGINR 236 (286)
T ss_dssp EECCSCS
T ss_pred EEecccc
Confidence 9997643
|
| >4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae} | Back alignment and structure |
|---|
Probab=96.04 E-value=0.016 Score=51.57 Aligned_cols=100 Identities=13% Similarity=0.105 Sum_probs=68.9
Q ss_pred ccHHHHHHHHhC---------CCc-EEEEcCCchHHHHHHHc-CC-cccCCHHHHhh--cCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQ---------GHD-VIVYDKNTDASQTLAKE-GA-NMALSLSTLAS--GAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~---------G~~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~ 67 (286)
||...+..|.+. +.+ |.++|+++++++++.+. |+ ..++|.+++++ +.|+|++|+|+....+.+..
T Consensus 37 ig~~h~~~~~~~~~~~~~~~~~~elvav~d~~~~~a~~~a~~~~~~~~y~d~~~ll~~~~vD~V~I~tp~~~H~~~~~~- 115 (412)
T 4gqa_A 37 MGQAHADAYRRAAMFYPDLPKRPHLYALADQDQAMAERHAAKLGAEKAYGDWRELVNDPQVDVVDITSPNHLHYTMAMA- 115 (412)
T ss_dssp HHHHHHHHHHHHHHHCTTSSSEEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCTTCCEEEECSCGGGHHHHHHH-
T ss_pred HHHHHHHHHHhccccccccCCCeEEEEEEcCCHHHHHHHHHHcCCCeEECCHHHHhcCCCCCEEEECCCcHHHHHHHHH-
Confidence 344555556543 234 44679999999888654 66 57899999986 57999999998766655543
Q ss_pred CccccccCCCCC-EEEEc-CCCCchHHHHHHHHHHhcCCceEe
Q psy764 68 SDGILKHAKPGV-IVIDS-STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 68 ~~~l~~~l~~g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+..|+ ++++. -+.+..+++++.+..++.|..+.-
T Consensus 116 ------al~aGkhVl~EKP~a~~~~ea~~l~~~a~~~g~~~~v 152 (412)
T 4gqa_A 116 ------AIAAGKHVYCEKPLAVNEQQAQEMAQAARRAGVKTMV 152 (412)
T ss_dssp ------HHHTTCEEEEESCSCSSHHHHHHHHHHHHHHTCCEEE
T ss_pred ------HHHcCCCeEeecCCcCCHHHHHHHHHHHHHhCCeeee
Confidence 244555 44553 255678888888888777765543
|
| >1f06_A MESO-diaminopimelate D-dehydrogenase; enzyme-NADPH-inhibitor ternary complex, oxidoreductase; HET: NDP 2NP; 2.10A {Corynebacterium glutamicum} SCOP: c.2.1.3 d.81.1.3 PDB: 1dap_A* 2dap_A* 3dap_A* | Back alignment and structure |
|---|
Probab=96.02 E-value=0.0056 Score=52.79 Aligned_cols=92 Identities=9% Similarity=0.055 Sum_probs=60.6
Q ss_pred ccHHHHHHHHhC-CCc-EEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQ-GHD-VIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||+.+++.|.+. +.+ |.++|+++++ .+. .|+..++++++++.++|+||+|+|+....+.+.. .+..|+
T Consensus 14 mG~~~~~~l~~~~~~elvav~d~~~~~--~~~-~gv~~~~d~~~ll~~~DvViiatp~~~h~~~~~~-------al~aG~ 83 (320)
T 1f06_A 14 LGRSVEKLIAKQPDMDLVGIFSRRATL--DTK-TPVFDVADVDKHADDVDVLFLCMGSATDIPEQAP-------KFAQFA 83 (320)
T ss_dssp HHHHHHHHHTTCSSEEEEEEEESSSCC--SSS-SCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHHH-------HHTTTS
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCHHH--hhc-CCCceeCCHHHHhcCCCEEEEcCCcHHHHHHHHH-------HHHCCC
Confidence 788899998876 455 5688998665 222 4666667888887889999999997655555443 355677
Q ss_pred EEEEcCCCC--chHH-HHHHHHHHhcC
Q psy764 80 IVIDSSTVD--PQVP-QTLSNLAREKQ 103 (286)
Q Consensus 80 ivid~st~~--p~~~-~~~~~~~~~~g 103 (286)
.+++.++.. .... +++.+..++.+
T Consensus 84 ~Vv~ekp~~~~~~~~~~~l~~~a~~~~ 110 (320)
T 1f06_A 84 CTVDTYDNHRDIPRHRQVMNEAATAAG 110 (320)
T ss_dssp EEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCcCCHHHHHHHHHHHHHhCC
Confidence 777665543 2333 45555544433
|
| >3gvi_A Malate dehydrogenase; NAD, oxidoreductase, tricarboxylic acid cycle, structural genomics; HET: ADP; 2.25A {Brucella melitensis biovar ABORTUS2308} PDB: 3gvh_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.021 Score=49.26 Aligned_cols=56 Identities=20% Similarity=0.266 Sum_probs=42.4
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHH----HHHH------cCCcc--cCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQ----TLAK------EGANM--ALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~----~l~~------~g~~~--~~s~~e~~~~adivi~~v~~~ 58 (286)
||+++|..|+.+|+ +|.+||+++++++ .+.. ...++ +.+. +++++||+||++.+.+
T Consensus 18 vG~~~a~~l~~~~~~~v~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~t~d~-~a~~~aDiVIiaag~p 86 (324)
T 3gvi_A 18 IGGTLAHLAGLKELGDVVLFDIAEGTPQGKGLDIAESSPVDGFDAKFTGANDY-AAIEGADVVIVTAGVP 86 (324)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHHHHHHHTCCCCEEEESSG-GGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCeEEEEeCCchhHHHHHHHHhchhhhcCCCCEEEEeCCH-HHHCCCCEEEEccCcC
Confidence 78999999999999 9999999998764 2222 12333 3555 7889999999998644
|
| >3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A | Back alignment and structure |
|---|
Probab=96.01 E-value=0.014 Score=50.79 Aligned_cols=93 Identities=19% Similarity=0.301 Sum_probs=62.9
Q ss_pred HHHHHhC-CCcE-EEEcCCchHHHHHHH----cCCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 7 LFFLQFQ-GHDV-IVYDKNTDASQTLAK----EGANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 7 A~~L~~~-G~~V-~~~dr~~~~~~~l~~----~g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
+..|.+. +++| .++|++ +.+.+.+ .++..++|+++++++ .|+|++|+|+....+.+.. .+..|
T Consensus 19 ~~~l~~~~~~~l~av~d~~--~~~~~a~~~~~~~~~~~~~~~~ll~~~~~D~V~i~tp~~~h~~~~~~-------al~aG 89 (349)
T 3i23_A 19 LPYVMIRETLEVKTIFDLH--VNEKAAAPFKEKGVNFTADLNELLTDPEIELITICTPAHTHYDLAKQ-------AILAG 89 (349)
T ss_dssp HHHHTTCTTEEEEEEECTT--CCHHHHHHHHTTTCEEESCTHHHHSCTTCCEEEECSCGGGHHHHHHH-------HHHTT
T ss_pred HHHHhhCCCeEEEEEECCC--HHHHHHHhhCCCCCeEECCHHHHhcCCCCCEEEEeCCcHHHHHHHHH-------HHHcC
Confidence 3445443 5665 478988 4444433 377888999999975 8999999998766555443 24456
Q ss_pred C-EEEEcC-CCCchHHHHHHHHHHhcCCceEe
Q psy764 79 V-IVIDSS-TVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 79 ~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+ ++++.- +.++.+.+++.+..+++|..+.-
T Consensus 90 k~Vl~EKP~a~~~~e~~~l~~~a~~~g~~~~v 121 (349)
T 3i23_A 90 KSVIVEKPFCDTLEHAEELFALGQEKGVVVMP 121 (349)
T ss_dssp CEEEECSCSCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEECCCcCCHHHHHHHHHHHHHcCCeEEE
Confidence 5 455542 56678888888888888876543
|
| >4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.024 Score=49.24 Aligned_cols=95 Identities=12% Similarity=0.116 Sum_probs=66.1
Q ss_pred HHHHHhC-CCcEE-EEcCCchHHHHHHHc-CC-cccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC-
Q psy764 7 LFFLQFQ-GHDVI-VYDKNTDASQTLAKE-GA-NMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV- 79 (286)
Q Consensus 7 A~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~- 79 (286)
+..+.+. +.+|. ++|+++++++.+.+. |+ ..++|++++++ +.|+|++|+|+....+.+.. .+..|+
T Consensus 40 ~~~~~~~~~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~I~tP~~~H~~~~~~-------al~aGkh 112 (350)
T 4had_A 40 VPAIQDAENCVVTAIASRDLTRAREMADRFSVPHAFGSYEEMLASDVIDAVYIPLPTSQHIEWSIK-------AADAGKH 112 (350)
T ss_dssp HHHHHHCSSEEEEEEECSSHHHHHHHHHHHTCSEEESSHHHHHHCSSCSEEEECSCGGGHHHHHHH-------HHHTTCE
T ss_pred HHHHHhCCCeEEEEEECCCHHHHHHHHHHcCCCeeeCCHHHHhcCCCCCEEEEeCCCchhHHHHHH-------HHhcCCE
Confidence 3344444 45654 779999999988754 76 47899999986 47999999998766555543 234455
Q ss_pred EEEEc-CCCCchHHHHHHHHHHhcCCceEe
Q psy764 80 IVIDS-STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 80 ivid~-st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
++++. -+.+..+++++.+..++.|..+.-
T Consensus 113 Vl~EKPla~~~~ea~~l~~~a~~~~~~l~v 142 (350)
T 4had_A 113 VVCEKPLALKAGDIDAVIAARDRNKVVVTE 142 (350)
T ss_dssp EEECSCCCSSGGGGHHHHHHHHHHTCCEEE
T ss_pred EEEeCCcccchhhHHHHHHHHHHcCCceeE
Confidence 44543 245677888888888877765543
|
| >1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI, protein structure initi midwest center for structural genomics; 2.31A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.013 Score=52.81 Aligned_cols=56 Identities=13% Similarity=0.162 Sum_probs=41.3
Q ss_pred cHHHHHHHHhC-----CCcEEEEcCCc--hHHHHHHH--------cC----CcccCCHHHHhhcCcEEEEecCCh
Q psy764 3 STLKLFFLQFQ-----GHDVIVYDKNT--DASQTLAK--------EG----ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 3 G~~lA~~L~~~-----G~~V~~~dr~~--~~~~~l~~--------~g----~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
|.+++..|+++ +++|..||+++ ++++.... .+ +..+.+..+++++||+||++++.+
T Consensus 20 ~~al~~~L~~~~~~l~~~ev~L~Di~~~~e~~~~~~~~~~~~~~~~~~~~~i~~t~D~~eal~gAD~VVitagv~ 94 (450)
T 1s6y_A 20 TPELVEGLIKRYHELPVGELWLVDIPEGKEKLEIVGALAKRMVEKAGVPIEIHLTLDRRRALDGADFVTTQFRVG 94 (450)
T ss_dssp HHHHHHHHHHTTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTT
T ss_pred HHHHHHHHHcCCCCCCCCEEEEEEcCCChHHHHHHHHHHHHHHhhcCCCcEEEEeCCHHHHhCCCCEEEEcCCCC
Confidence 56677778874 67899999999 87654211 11 334568889999999999999964
|
| >3fi9_A Malate dehydrogenase; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=95.99 E-value=0.018 Score=50.05 Aligned_cols=57 Identities=12% Similarity=0.109 Sum_probs=43.3
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHH----HHHc-----CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQT----LAKE-----GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~----l~~~-----g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||+++|..++..| .+|.++|+++++++. +... .+..+.+..+++++||+||++...+
T Consensus 20 VG~~~a~~l~~~g~~~evvLiDi~~~k~~g~a~DL~~~~~~~~~i~~t~d~~~al~dADvVvitaG~p 87 (343)
T 3fi9_A 20 IGSNMAQTAAMMRLTPNLCLYDPFAVGLEGVAEEIRHCGFEGLNLTFTSDIKEALTDAKYIVSSGGAP 87 (343)
T ss_dssp HHHHHHHHHHHTTCCSCEEEECSCHHHHHHHHHHHHHHCCTTCCCEEESCHHHHHTTEEEEEECCC--
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCchhHHHHHHhhhhCcCCCCceEEcCCHHHHhCCCCEEEEccCCC
Confidence 6889999999888 489999999887654 3332 2344567888999999999997644
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.025 Score=45.13 Aligned_cols=55 Identities=13% Similarity=0.046 Sum_probs=41.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-----cCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-----ALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----~~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|+++|++|++.+|++++.+.+. .++.. .+...+++.++|+||.+...
T Consensus 12 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~-~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 71 (221)
T 3ew7_A 12 AGSRILEEAKNRGHEVTAIVRNAGKITQTH-KDINILQKDIFDLTLSDLSDQNVVVDAYGI 71 (221)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCSHHHHHHC-SSSEEEECCGGGCCHHHHTTCSEEEECCCS
T ss_pred hHHHHHHHHHhCCCEEEEEEcCchhhhhcc-CCCeEEeccccChhhhhhcCCCEEEECCcC
Confidence 799999999999999999999998877654 33221 12112677889999998864
|
| >3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A* | Back alignment and structure |
|---|
Probab=95.78 E-value=0.03 Score=47.91 Aligned_cols=99 Identities=13% Similarity=0.097 Sum_probs=68.6
Q ss_pred ccHHHHHHHHhCCCc-EEEEcCCchHHHHHHHc--CCcccCCHHHHh----------hcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGHD-VIVYDKNTDASQTLAKE--GANMALSLSTLA----------SGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~--g~~~~~s~~e~~----------~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||...+..|.+.+.+ |.++|+++++. .+.+. +...+.+.++++ .+.|+|++|+|+....+.+..
T Consensus 15 i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~vD~V~I~tP~~~H~~~~~~-- 91 (312)
T 3o9z_A 15 IAPRHLKAIKEVGGVLVASLDPATNVG-LVDSFFPEAEFFTEPEAFEAYLEDLRDRGEGVDYLSIASPNHLHYPQIRM-- 91 (312)
T ss_dssp SHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESCHHHHHHHHHHHHHTTCCCSEEEECSCGGGHHHHHHH--
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCceeCCHHHHHHHhhhhcccCCCCcEEEECCCchhhHHHHHH--
Confidence 566677788877776 55779998874 23222 567888999987 468999999998766554443
Q ss_pred ccccccCCCCCEE-EEc-CCCCchHHHHHHHHHHhcCCceEe
Q psy764 69 DGILKHAKPGVIV-IDS-STVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 69 ~~l~~~l~~g~iv-id~-st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+..|+-| ++. -+.++.+.+++.+..+++|..+..
T Consensus 92 -----al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v 128 (312)
T 3o9z_A 92 -----ALRLGANALSEKPLVLWPEEIARLKELEARTGRRVYT 128 (312)
T ss_dssp -----HHHTTCEEEECSSSCSCHHHHHHHHHHHHHHCCCEEE
T ss_pred -----HHHCCCeEEEECCCCCCHHHHHHHHHHHHHcCCEEEE
Confidence 24456544 443 256678888888888888776543
|
| >3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.031 Score=47.99 Aligned_cols=99 Identities=12% Similarity=0.210 Sum_probs=68.7
Q ss_pred ccHHHHHHHHhCCCc-EEEEcCCchHHHHHHHc--CCcccCCHHHHh-----------hcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHD-VIVYDKNTDASQTLAKE--GANMALSLSTLA-----------SGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~--g~~~~~s~~e~~-----------~~adivi~~v~~~~~~~~v~~~ 67 (286)
||...+..|.+.+.+ |.++|+++++. .+.+. +...++++++++ .+.|+|++|+|+....+.+..
T Consensus 15 i~~~h~~~l~~~~~~lvav~d~~~~~~-~~~~~~~~~~~~~~~~~ll~~~~~l~~~~~~~vD~V~I~tP~~~H~~~~~~- 92 (318)
T 3oa2_A 15 IAPRHMRAIKDTGNCLVSAYDINDSVG-IIDSISPQSEFFTEFEFFLDHASNLKRDSATALDYVSICSPNYLHYPHIAA- 92 (318)
T ss_dssp SHHHHHHHHHHTTCEEEEEECSSCCCG-GGGGTCTTCEEESSHHHHHHHHHHHTTSTTTSCCEEEECSCGGGHHHHHHH-
T ss_pred HHHHHHHHHHhCCCEEEEEEcCCHHHH-HHHhhCCCCcEECCHHHHHHhhhhhhhccCCCCcEEEECCCcHHHHHHHHH-
Confidence 566777888877776 55779998764 23222 577788999887 468999999998766555443
Q ss_pred CccccccCCCCC-EEEEcC-CCCchHHHHHHHHHHhcCCceEe
Q psy764 68 SDGILKHAKPGV-IVIDSS-TVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 68 ~~~l~~~l~~g~-ivid~s-t~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.+..|+ ++++.= +.++.+.+++.+..+++|..+..
T Consensus 93 ------al~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~v 129 (318)
T 3oa2_A 93 ------GLRLGCDVICEKPLVPTPEMLDQLAVIERETDKRLYN 129 (318)
T ss_dssp ------HHHTTCEEEECSSCCSCHHHHHHHHHHHHHHTCCEEE
T ss_pred ------HHHCCCeEEEECCCcCCHHHHHHHHHHHHHhCCEEEE
Confidence 234555 445532 56778888888888887776554
|
| >1obb_A Maltase, alpha-glucosidase; glycosidase, sulfinic acid, NAD+, maltose, hydrolase; HET: MAL NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.5 d.162.1.2 | Back alignment and structure |
|---|
Probab=95.73 E-value=0.012 Score=53.37 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=42.1
Q ss_pred cHHHHHHHHhC----CCcEEEEcCCchHHHHHHHc------------CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 3 STLKLFFLQFQ----GHDVIVYDKNTDASQTLAKE------------GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 3 G~~lA~~L~~~----G~~V~~~dr~~~~~~~l~~~------------g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
|++++..|++. |++|.+||+++++++..... .++.+.++.+++++||+||+++|..
T Consensus 17 g~ala~~La~~~~l~~~eV~L~Di~~e~l~~~~~~~~~~l~~~~~~~~I~~ttD~~eal~dAD~VIiaagv~ 88 (480)
T 1obb_A 17 SLRLVSDLCKTPGLSGSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVINTAMVG 88 (480)
T ss_dssp HHHHHHHHHTCGGGTTCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTT
T ss_pred HHHHHHHHHhcCcCCCCEEEEEeCCHHHHHHHHHHHHHHhccCCCCcEEEEECCHHHHhCCCCEEEECCCcc
Confidence 46667778754 89999999999876553221 1344578888999999999999863
|
| >3p7m_A Malate dehydrogenase; putative dehydrogenase, enzyme, structural genomics, center structural genomics of infectious diseases, csgid; 2.20A {Francisella tularensis} | Back alignment and structure |
|---|
Probab=95.71 E-value=0.024 Score=48.83 Aligned_cols=56 Identities=11% Similarity=0.113 Sum_probs=41.8
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHH----HHH------cCCcc--cCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQT----LAK------EGANM--ALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~----l~~------~g~~~--~~s~~e~~~~adivi~~v~~~ 58 (286)
||+++|..|+..|+ +|.+||+++++++. +.. ...++ +.+ .+++++||+||++.+.+
T Consensus 16 vG~~~a~~l~~~~~~~v~l~Di~~~~~~g~a~dL~~~~~~~~~~~~v~~t~d-~~a~~~aDvVIi~ag~p 84 (321)
T 3p7m_A 16 IGGTLAHLALIKQLGDVVLFDIAQGMPNGKALDLLQTCPIEGVDFKVRGTND-YKDLENSDVVIVTAGVP 84 (321)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESC-GGGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCceEEEEeCChHHHHHHHHHHHhhhhhcCCCcEEEEcCC-HHHHCCCCEEEEcCCcC
Confidence 78999999999998 99999999987642 221 12333 344 47889999999997644
|
| >3d0o_A L-LDH 1, L-lactate dehydrogenase 1; cytoplasm, glycolysis, NAD, oxidoreductase, phosphoprotein; 1.80A {Staphylococcus aureus} PDB: 3d4p_A* 3h3j_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.027 Score=48.42 Aligned_cols=57 Identities=12% Similarity=0.139 Sum_probs=42.0
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHH----HH------cCCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTL----AK------EGANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l----~~------~g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
+|++++..|+.+|+ +|.++|+++++++.. .. ...++..+..+++++||+||++.+.+
T Consensus 17 vG~~la~~l~~~~~~~ei~L~Di~~~~~~g~~~dl~~~~~~~~~~~~v~~~~~~a~~~aDvVvi~ag~~ 85 (317)
T 3d0o_A 17 VGSSYAFSLVNQSIVDELVIIDLDTEKVRGDVMDLKHATPYSPTTVRVKAGEYSDCHDADLVVICAGAA 85 (317)
T ss_dssp HHHHHHHHHHHHCSCSEEEEECSCHHHHHHHHHHHHHHGGGSSSCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHhhhhhhhHHhhhhhcCCCeEEEeCCHHHhCCCCEEEECCCCC
Confidence 68999999998884 899999998766532 11 12233335577899999999999765
|
| >3fef_A Putative glucosidase LPLD; gulosidase, structural genomics, unknown function, glycosidase, hydrolase, manganese, metal-binding, NAD, PSI- 2; 2.20A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.011 Score=53.38 Aligned_cols=54 Identities=20% Similarity=0.202 Sum_probs=43.0
Q ss_pred cHHHHHHHHh----CCCcEEEEcCCchHHHHHHHc---------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 3 STLKLFFLQF----QGHDVIVYDKNTDASQTLAKE---------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 3 G~~lA~~L~~----~G~~V~~~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
|..++..|++ .| +|.+||+++++++..... .++.+.++++++++||+||++++.
T Consensus 19 g~~la~~l~~~~~~~g-eV~L~Di~~e~le~~~~~~~~l~~~~~~I~~TtD~~eAl~dADfVI~airv 85 (450)
T 3fef_A 19 ARSLMSDLSIDERMSG-TVALYDLDFEAAQKNEVIGNHSGNGRWRYEAVSTLKKALSAADIVIISILP 85 (450)
T ss_dssp HHHHHHHHHHCSSCCE-EEEEECSSHHHHHHHHHHHTTSTTSCEEEEEESSHHHHHTTCSEEEECCCS
T ss_pred HHHHHHHHHhccccCC-eEEEEeCCHHHHHHHHHHHHHHhccCCeEEEECCHHHHhcCCCEEEecccc
Confidence 4678888876 56 999999999887655432 255678999999999999999973
|
| >3qvo_A NMRA family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MNB; 2.30A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0034 Score=51.33 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=38.7
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHcCCc-----c--cCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKEGAN-----M--ALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g~~-----~--~~s~~e~~~~adivi~~v~~ 57 (286)
||+.+++.|++.| ++|++.+|++++.+.+...++. + .+++.++++++|+||.+...
T Consensus 35 iG~~l~~~L~~~G~~~V~~~~R~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~D~vv~~a~~ 98 (236)
T 3qvo_A 35 IARHVINQLADKQTIKQTLFARQPAKIHKPYPTNSQIIMGDVLNHAALKQAMQGQDIVYANLTG 98 (236)
T ss_dssp HHHHHHHHHTTCTTEEEEEEESSGGGSCSSCCTTEEEEECCTTCHHHHHHHHTTCSEEEEECCS
T ss_pred HHHHHHHHHHhCCCceEEEEEcChhhhcccccCCcEEEEecCCCHHHHHHHhcCCCEEEEcCCC
Confidence 7999999999999 8999999998875443222211 1 12344556777877777654
|
| >4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=95.52 E-value=0.048 Score=47.79 Aligned_cols=87 Identities=11% Similarity=0.060 Sum_probs=60.6
Q ss_pred CCc-EEEEcCCchHHHHHHHc-CC-cccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC-EEEEc-CC
Q psy764 14 GHD-VIVYDKNTDASQTLAKE-GA-NMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV-IVIDS-ST 86 (286)
Q Consensus 14 G~~-V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~-ivid~-st 86 (286)
+.+ |.++|+++++++.+.+. |+ ..++|.+++++ +.|+|++|+|+....+.+.. .+..|+ ++++. -+
T Consensus 56 ~~~lvav~d~~~~~a~~~a~~~g~~~~y~d~~ell~~~~iDaV~IatP~~~H~~~a~~-------al~aGkhVl~EKPla 128 (393)
T 4fb5_A 56 RPRLVHLAEANAGLAEARAGEFGFEKATADWRALIADPEVDVVSVTTPNQFHAEMAIA-------ALEAGKHVWCEKPMA 128 (393)
T ss_dssp CCEEEEEECC--TTHHHHHHHHTCSEEESCHHHHHHCTTCCEEEECSCGGGHHHHHHH-------HHHTTCEEEECSCSC
T ss_pred CcEEEEEECCCHHHHHHHHHHhCCCeecCCHHHHhcCCCCcEEEECCChHHHHHHHHH-------HHhcCCeEEEccCCc
Confidence 345 55779999999888765 76 47889999986 47899999998776666554 244565 44543 25
Q ss_pred CCchHHHHHHHHHHhcCCceE
Q psy764 87 VDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 87 ~~p~~~~~~~~~~~~~g~~~~ 107 (286)
.+..+++++.+..++.|..+.
T Consensus 129 ~~~~ea~~l~~~a~~~g~~l~ 149 (393)
T 4fb5_A 129 PAYADAERMLATAERSGKVAA 149 (393)
T ss_dssp SSHHHHHHHHHHHHHSSSCEE
T ss_pred ccHHHHHHhhhhHHhcCCccc
Confidence 567788888888877776544
|
| >1vl6_A Malate oxidoreductase; TM0542, NAD-dependent malic enzyme, structural genomics, JCS protein structure initiative, PSI; 2.61A {Thermotoga maritima} SCOP: c.2.1.7 c.58.1.3 PDB: 2hae_A* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.036 Score=48.63 Aligned_cols=85 Identities=15% Similarity=0.190 Sum_probs=59.3
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCC----chHH--------HHHHHc--CCcccCCHHHHhhcCcEEEEecCChhH-HHHHh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKN----TDAS--------QTLAKE--GANMALSLSTLASGAEFIISMLPASQD-VLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~----~~~~--------~~l~~~--g~~~~~s~~e~~~~adivi~~v~~~~~-~~~v~ 65 (286)
+|...|+.|...|. +|++.||+ .++. +.+.+. ......++.|+++++|++|-+.. |.. .++++
T Consensus 203 AG~~iAkll~~~G~~~I~v~Dr~Gli~~~R~~~~L~~~k~~~A~~~~~~~~~~~L~eav~~ADVlIG~Sa-p~l~t~emV 281 (388)
T 1vl6_A 203 AGYNIVKFLLDLGVKNVVAVDRKGILNENDPETCLNEYHLEIARITNPERLSGDLETALEGADFFIGVSR-GNILKPEWI 281 (388)
T ss_dssp HHHHHHHHHHHHTCCEEEEEETTEECCTTSGGGCSSHHHHHHHHTSCTTCCCSCHHHHHTTCSEEEECSC-SSCSCHHHH
T ss_pred HHHHHHHHHHhCCCCeEEEEECCCcccCCCcccccCHHHHHHHHhhhccCchhhHHHHHccCCEEEEeCC-CCccCHHHH
Confidence 57889999999998 79999998 6552 334333 12235679999999999988865 322 23443
Q ss_pred cCCccccccCCCCCEEEEcCCCCchHHHH
Q psy764 66 DGSDGILKHAKPGVIVIDSSTVDPQVPQT 94 (286)
Q Consensus 66 ~~~~~l~~~l~~g~ivid~st~~p~~~~~ 94 (286)
. .+.++.+|+++|...|+..-+
T Consensus 282 k-------~Ma~~pIIfalSNPt~E~~p~ 303 (388)
T 1vl6_A 282 K-------KMSRKPVIFALANPVPEIDPE 303 (388)
T ss_dssp T-------TSCSSCEEEECCSSSCSSCHH
T ss_pred H-------hcCCCCEEEEcCCCCCCCCHH
Confidence 3 355678999999877754433
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.047 Score=43.73 Aligned_cols=56 Identities=7% Similarity=0.087 Sum_probs=42.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-----cCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-----ALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-----~~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|+++|++|++.+|++++.+.+...++.. .+...+++.++|+||.+...
T Consensus 12 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~d~vi~~ag~ 72 (224)
T 3h2s_A 12 AGSAIVAEARRRGHEVLAVVRDPQKAADRLGATVATLVKEPLVLTEADLDSVDAVVDALSV 72 (224)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHTCTTSEEEECCGGGCCHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEEEEecccccccccCCCceEEecccccccHhhcccCCEEEECCcc
Confidence 799999999999999999999998877664444322 11112667889999888754
|
| >1ldn_A L-lactate dehydrogenase; oxidoreductase(CHOH(D)-NAD(A)); HET: FBP NAD; 2.50A {Geobacillus stearothermophilus} SCOP: c.2.1.5 d.162.1.1 PDB: 1ldb_A 2ldb_A* | Back alignment and structure |
|---|
Probab=95.32 E-value=0.031 Score=47.99 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=41.0
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHH----HHc------CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTL----AKE------GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l----~~~------g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||++++..|+.+|. +|.++|+++++.+.. ... ..++..+..+++++||+||++.+.+
T Consensus 17 vG~sla~~l~~~~~~~ev~l~Di~~~~~~~~~~dl~~~~~~~~~~~~i~~~~~~al~~aDvViia~~~~ 85 (316)
T 1ldn_A 17 VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGAN 85 (316)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCcchHHHHHhhHHHHhhhcCCCeEEEcCcHHHhCCCCEEEEcCCCC
Confidence 79999999988775 899999998765532 111 1222234567789999999998754
|
| >2pgd_A 6-phosphogluconate dehydrogenase; oxidoreductase (CHOH(D)-NADP+(A)); 2.00A {Ovis aries} SCOP: a.100.1.1 c.2.1.6 PDB: 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A 2jkv_A* | Back alignment and structure |
|---|
Probab=95.30 E-value=0.046 Score=49.82 Aligned_cols=105 Identities=12% Similarity=0.040 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHcc-CCCcccccccCCC----CCccccCCCCCCC
Q psy764 157 GQVAKLCNNMLLGVTMMGVAEAMNLGVKL------GMNAKLLSDVINTS-SGRCWSSEVYNPV----PGVLSNVPASNNY 225 (286)
Q Consensus 157 a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gl~~~~~~~~~~~~-~~~s~~~~~~~~~----~~~~~~~~~~~~~ 225 (286)
.+.+|+++|.+.+.++.+.+|.+.+.++. ++|...+.++.+.+ .-+||+++..... |.+ .+.+ +
T Consensus 316 ~~~~~~v~~al~~~~~~syaqGf~ll~~as~~~~w~l~~~~ia~~wr~Gciirs~~l~~i~~a~~~~~~l-~~l~----~ 390 (482)
T 2pgd_A 316 KSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPGL-QNLL----L 390 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHHHHHCTTC-SCGG----G
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcCcchHHHHHHHHHHHHhcCCCh-hhhh----c
Confidence 89999999999999999999999999873 89999999998876 3566766532210 110 0000 1
Q ss_pred CCCc--cchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHH
Q psy764 226 NGGF--KISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLM 266 (286)
Q Consensus 226 ~~~f--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~ 266 (286)
++.| .+.......+.+...|-+.|+|+|.+.++..+|+.-.
T Consensus 391 ~~~~~~~~~~~~~~~r~~v~~a~~~g~p~p~~s~al~~~~~~~ 433 (482)
T 2pgd_A 391 DDFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYR 433 (482)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcc
Confidence 1222 2333346688899999999999999999999776543
|
| >3ldh_A Lactate dehydrogenase; oxidoreductase, CHOH donor, NAD acceptor; HET: NAD; 3.00A {Squalus acanthias} SCOP: i.12.1.1 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.015 Score=50.19 Aligned_cols=80 Identities=14% Similarity=0.114 Sum_probs=54.2
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHH----HHc-------CCcccCCHHHHhhcCcEEEEecCChh---------
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTL----AKE-------GANMALSLSTLASGAEFIISMLPASQ--------- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l----~~~-------g~~~~~s~~e~~~~adivi~~v~~~~--------- 59 (286)
||.++|..|+.+|+ +|.++|+++++++.. ... .+..+.++++ +++||+||++...++
T Consensus 32 vG~~~a~~la~~g~~~ev~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~t~d~~~-~~daDiVIitaG~p~kpG~tR~dl 110 (330)
T 3ldh_A 32 VGMADAISVLMKDLADEVALVDVMEDKLKGEMMDLEHGSLFLHTAKIVSGKDYSV-SAGSKLVVITAGARQQEGESRLNL 110 (330)
T ss_dssp HHHHHHHHHHHHCCCSEEEEECSCHHHHHHHHHHHHHHGGGSCCSEEEEESSSCS-CSSCSEEEECCSCCCCSSCCTTGG
T ss_pred HHHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhhhhcccCCeEEEcCCHHH-hCCCCEEEEeCCCCCCCCCCHHHH
Confidence 79999999999997 899999998876542 211 1233456765 899999999976542
Q ss_pred ------HHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 60 ------DVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 60 ------~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.++++... +.+. .|+.+++..|+
T Consensus 111 l~~N~~I~k~i~~~---I~k~-~P~a~ilvvtN 139 (330)
T 3ldh_A 111 VQRNVNIFKFIIPN---IVKH-SPDCLKELHPE 139 (330)
T ss_dssp GHHHHHHHHHHHHH---HHHH-CTTCEEEECSS
T ss_pred HHhhHHHHHHHHHH---HHhh-CCCceEEeCCC
Confidence 23444432 4444 56677776664
|
| >1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A | Back alignment and structure |
|---|
Probab=95.26 E-value=0.021 Score=49.33 Aligned_cols=94 Identities=13% Similarity=0.105 Sum_probs=59.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc----CC---HHHH-hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA----LS---LSTL-ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s---~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.|.+.|+ |.+.|+++++++ +.+.|..+. .+ +.++ ++++|.++++.+++..-..+.. ...
T Consensus 126 ~g~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~----~ar 199 (336)
T 1lnq_A 126 STLECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLESDSETIHCIL----GIR 199 (336)
T ss_dssp HHHHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSSHHHHHHHHH----HHH
T ss_pred HHHHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCccHHHHHHHH----HHH
Confidence 57889999999999 999999999998 877664322 12 2233 5689999999997644333332 233
Q ss_pred cCCCC-CEEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 74 HAKPG-VIVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 74 ~l~~g-~ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
.+.+. +++.-. ..+...+ .+.+.|+..+
T Consensus 200 ~~~~~~~iiar~--~~~~~~~----~l~~~G~d~v 228 (336)
T 1lnq_A 200 KIDESVRIIAEA--ERYENIE----QLRMAGADQV 228 (336)
T ss_dssp TTCTTSEEEEEC--SSGGGHH----HHHHTTCSEE
T ss_pred HHCCCCeEEEEE--CCHHHHH----HHHHcCCCEE
Confidence 34554 455543 3344332 3345676654
|
| >1lc0_A Biliverdin reductase A; oxidoreductase, tetrapyrrole, bIle pigment, heme, bilirubin, NADH; 1.20A {Rattus norvegicus} SCOP: c.2.1.3 d.81.1.4 PDB: 1lc3_A* 1gcu_A 2h63_A* | Back alignment and structure |
|---|
Probab=95.19 E-value=0.03 Score=47.49 Aligned_cols=100 Identities=14% Similarity=0.084 Sum_probs=67.7
Q ss_pred ccHHHHHHHHh----CCCcEE-EEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQF----QGHDVI-VYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~----~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
||...+..|.+ .+.++. ++||++.. ...|+. ..|++++++ +.|+|++|+|+....+.+.. .
T Consensus 18 iG~~~~~~l~~~~~~~~~~lvav~d~~~~a----~~~g~~-~~~~~ell~~~~vD~V~i~tp~~~H~~~~~~-------a 85 (294)
T 1lc0_A 18 AGSVRLRDLKDPRSAAFLNLIGFVSRRELG----SLDEVR-QISLEDALRSQEIDVAYICSESSSHEDYIRQ-------F 85 (294)
T ss_dssp HHHHHHHHHTSHHHHTTEEEEEEECSSCCC----EETTEE-BCCHHHHHHCSSEEEEEECSCGGGHHHHHHH-------H
T ss_pred HHHHHHHHHhccccCCCEEEEEEECchHHH----HHcCCC-CCCHHHHhcCCCCCEEEEeCCcHhHHHHHHH-------H
Confidence 56677777754 345544 67886421 122544 478999987 68999999998766555543 3
Q ss_pred CCCCC-EEEEc-CCCCchHHHHHHHHHHhcCCceEeccCCC
Q psy764 75 AKPGV-IVIDS-STVDPQVPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 75 l~~g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
+..|+ ++++. -+.++.+.+++.+..+++|..+..++...
T Consensus 86 l~aGkhVl~EKPla~~~~ea~~l~~~a~~~g~~~~~~~~~r 126 (294)
T 1lc0_A 86 LQAGKHVLVEYPMTLSFAAAQELWELAAQKGRVLHEEHVEL 126 (294)
T ss_dssp HHTTCEEEEESCSCSCHHHHHHHHHHHHHTTCCEEEECGGG
T ss_pred HHCCCcEEEeCCCCCCHHHHHHHHHHHHHhCCEEEEEEhHh
Confidence 44566 66664 46678889999998888888777655443
|
| >3nep_X Malate dehydrogenase; halophIle, molecular adpatation, NAD, oxidoreductase, tricarboxylic acid cycle; 1.55A {Salinibacter ruber} | Back alignment and structure |
|---|
Probab=95.17 E-value=0.035 Score=47.58 Aligned_cols=58 Identities=9% Similarity=0.038 Sum_probs=42.4
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHH----HHHH------cCCccc-CCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQ----TLAK------EGANMA-LSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~----~l~~------~g~~~~-~s~~e~~~~adivi~~v~~~~ 59 (286)
||.++|..|+.+|+ +|.++|+++++++ .+.. ....+. .+..+++++||+||++.+.+.
T Consensus 11 vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~~v~~~~~~~a~~~aDvVii~ag~~~ 81 (314)
T 3nep_X 11 VGATVAECVARQDVAKEVVMVDIKDGMPQGKALDMRESSPIHGFDTRVTGTNDYGPTEDSDVCIITAGLPR 81 (314)
T ss_dssp HHHHHHHHHHHHTCSSEEEEECSSTTHHHHHHHHHHHHHHHHTCCCEEEEESSSGGGTTCSEEEECCCC--
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCchHHHHHHHHHHhccccccCCCcEEEECCCHHHhCCCCEEEECCCCCC
Confidence 79999999999887 8999999998764 2222 123333 355678899999999987653
|
| >4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida} | Back alignment and structure |
|---|
Probab=95.11 E-value=0.063 Score=46.98 Aligned_cols=84 Identities=12% Similarity=0.153 Sum_probs=57.1
Q ss_pred EEEEcCCchHHHHHHHc-CC-cccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC-EEEEc-CCCCch
Q psy764 17 VIVYDKNTDASQTLAKE-GA-NMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV-IVIDS-STVDPQ 90 (286)
Q Consensus 17 V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~-ivid~-st~~p~ 90 (286)
+.++|+++++++.+.+. |+ ..++|.+++++ +.|+|++|+|+....+.+.. .+..|+ ++++. -+.+..
T Consensus 41 ~av~d~~~~~a~~~a~~~g~~~~~~d~~~ll~~~~iDaV~I~tP~~~H~~~~~~-------al~aGkhVl~EKPla~t~~ 113 (390)
T 4h3v_A 41 NVLCGRDAEAVRAAAGKLGWSTTETDWRTLLERDDVQLVDVCTPGDSHAEIAIA-------ALEAGKHVLCEKPLANTVA 113 (390)
T ss_dssp EEEECSSHHHHHHHHHHHTCSEEESCHHHHTTCTTCSEEEECSCGGGHHHHHHH-------HHHTTCEEEEESSSCSSHH
T ss_pred EEEEcCCHHHHHHHHHHcCCCcccCCHHHHhcCCCCCEEEEeCChHHHHHHHHH-------HHHcCCCceeecCcccchh
Confidence 45779999999888654 65 57789999986 47899999998776666554 244555 55553 245567
Q ss_pred HHHHHHHH---HHhcCCceE
Q psy764 91 VPQTLSNL---AREKQITFL 107 (286)
Q Consensus 91 ~~~~~~~~---~~~~g~~~~ 107 (286)
+++++.+. ..+.|..+.
T Consensus 114 ea~~l~~~~~~~~~~g~~~~ 133 (390)
T 4h3v_A 114 EAEAMAAAAAKAAAGGIRSM 133 (390)
T ss_dssp HHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHhcCCceE
Confidence 77777444 444555433
|
| >1smk_A Malate dehydrogenase, glyoxysomal; tricarboxylic cycle, glyoxysome, NAD, glyoxylate bypass, oxidoreductase; HET: CIT; 2.50A {Citrullus lanatus} PDB: 1sev_A | Back alignment and structure |
|---|
Probab=95.03 E-value=0.067 Score=46.10 Aligned_cols=57 Identities=12% Similarity=0.200 Sum_probs=41.3
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchH--HHHHHHcCC--cc-----cCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDA--SQTLAKEGA--NM-----ALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~--~~~l~~~g~--~~-----~~s~~e~~~~adivi~~v~~~ 58 (286)
+|++++..|+..| ++|.++|++++. ...+..... .+ .+++.++++++|+||++.+.+
T Consensus 20 VG~~la~~L~~~g~~~ev~l~Di~~~~~~~~dL~~~~~~~~v~~~~~t~d~~~al~gaDvVi~~ag~~ 87 (326)
T 1smk_A 20 IGQPLAMLMKMNPLVSVLHLYDVVNAPGVTADISHMDTGAVVRGFLGQQQLEAALTGMDLIIVPAGVP 87 (326)
T ss_dssp THHHHHHHHHHCTTEEEEEEEESSSHHHHHHHHHTSCSSCEEEEEESHHHHHHHHTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCCCcHhHHHHhhcccccceEEEEeCCCCHHHHcCCCCEEEEcCCcC
Confidence 7999999999999 799999988762 222333221 11 235678899999999998644
|
| >3tl2_A Malate dehydrogenase; center for structural genomics of infectious diseases, csgid dehydrogenase, oxidoreductase, citric acid cycle; 1.70A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=95.02 E-value=0.041 Score=47.20 Aligned_cols=56 Identities=13% Similarity=0.171 Sum_probs=39.9
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCC--chHHHHH----HH------cCCcc--cCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKN--TDASQTL----AK------EGANM--ALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~--~~~~~~l----~~------~g~~~--~~s~~e~~~~adivi~~v~~~ 58 (286)
||+++|..|+.+|+ +|.+||++ +++.+.. .. ...++ +++ .+.+++||+||++...+
T Consensus 19 vG~~ia~~l~~~g~~~v~l~D~~~~~~~~~g~a~dl~~~~~~~~~~~~i~~t~d-~~a~~~aDvVIiaag~p 89 (315)
T 3tl2_A 19 TGATTAFLLAQKELADVVLVDIPQLENPTKGKALDMLEASPVQGFDANIIGTSD-YADTADSDVVVITAGIA 89 (315)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHHHHHHHHHHTCCCCEEEESC-GGGGTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCeEEEEeccchHHHHHHhhhhHHHhhhhccCCCEEEEcCC-HHHhCCCCEEEEeCCCC
Confidence 79999999999999 99999999 4443321 11 12222 334 46789999999998544
|
| >1mld_A Malate dehydrogenase; oxidoreductase(NAD(A)-CHOH(D)); HET: CIT; 1.83A {Sus scrofa} SCOP: c.2.1.5 d.162.1.1 PDB: 2dfd_A* | Back alignment and structure |
|---|
Probab=94.99 E-value=0.059 Score=46.20 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=40.6
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHH--HHHHHcC----Ccc---cCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDAS--QTLAKEG----ANM---ALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~--~~l~~~g----~~~---~~s~~e~~~~adivi~~v~~~ 58 (286)
+|++++..|+..| ++|.++|+++.+. ..+.... +.. +++++++++++|+||++...+
T Consensus 12 VG~~la~~L~~~~~~~ev~L~Di~~~~~~a~dL~~~~~~~~l~~~~~t~d~~~a~~~aDvVvi~ag~~ 79 (314)
T 1mld_A 12 IGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAGVP 79 (314)
T ss_dssp THHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCcEEEEEeCCccHHHHHHHhccCcCceEEEecCCCCHHHHhCCCCEEEECCCcC
Confidence 7999999999988 6899999987222 1222211 122 246888999999999998644
|
| >3vku_A L-LDH, L-lactate dehydrogenase; rossmann fold, NADH binding, oxidoreductase; 1.96A {Lactobacillus casei} PDB: 2zqz_A 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.043 Score=47.31 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=43.3
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHH----HHc-----CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTL----AKE-----GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l----~~~-----g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||.++|..|+..|+ +|.++|+++++++.. ... ..++..+..+++++||+||++...+
T Consensus 20 vG~~~a~~l~~~~~~~el~l~D~~~~k~~g~a~DL~~~~~~~~~~~i~~~~~~a~~~aDiVvi~ag~~ 87 (326)
T 3vku_A 20 VGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLEDALPFTSPKKIYSAEYSDAKDADLVVITAGAP 87 (326)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCeEEEEeCChHHHHHHHhhHhhhhhhcCCcEEEECcHHHhcCCCEEEECCCCC
Confidence 78999999999887 899999998877633 211 2334445567889999999998654
|
| >2i6t_A Ubiquitin-conjugating enzyme E2-like isoform A; L-lactate dehydrogenase, oxidoreductase, ubiquitin-protein L unknown function; 2.10A {Homo sapiens} PDB: 3dl2_A | Back alignment and structure |
|---|
Probab=94.91 E-value=0.027 Score=48.11 Aligned_cols=80 Identities=8% Similarity=0.100 Sum_probs=51.5
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchH---HHHHHHc---CCcccCCHHHHhhcCcEEEEecCCh--------------h
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDA---SQTLAKE---GANMALSLSTLASGAEFIISMLPAS--------------Q 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~---~~~l~~~---g~~~~~s~~e~~~~adivi~~v~~~--------------~ 59 (286)
||..++..|+.+|+ +|.++|++++. +..+... .++.+.++ +.+++||+||++...+ .
T Consensus 25 vG~~~a~~l~~~g~~~ev~L~Di~~~~~g~a~dl~~~~~~~i~~t~d~-~~l~~aD~Vi~aag~~~pG~tR~dl~~~n~~ 103 (303)
T 2i6t_A 25 LGIACTLAISAKGIADRLVLLDLSEGTKGATMDLEIFNLPNVEISKDL-SASAHSKVVIFTVNSLGSSQSYLDVVQSNVD 103 (303)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECCC-----CHHHHHHHTCTTEEEESCG-GGGTTCSEEEECCCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCEEEEEcCCcchHHHHHHHhhhcCCCeEEeCCH-HHHCCCCEEEEcCCCCCCCCCHHHHHHHHHH
Confidence 68889999999999 99999999752 2233222 34455677 7789999999997322 1
Q ss_pred HHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 60 DVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 60 ~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.++++... +.+.. ++.+++..|+
T Consensus 104 i~~~i~~~---i~~~~-p~a~iiv~sN 126 (303)
T 2i6t_A 104 MFRALVPA---LGHYS-QHSVLLVASQ 126 (303)
T ss_dssp HHHHHHHH---HHHHT-TTCEEEECSS
T ss_pred HHHHHHHH---HHHhC-CCeEEEEcCC
Confidence 23444442 44433 6777777666
|
| >3r6d_A NAD-dependent epimerase/dehydratase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, veillo parvula; HET: MLZ; 1.25A {Veillonella parvula dsm 2008} PDB: 4hng_A 4hnh_A* 3r14_A* | Back alignment and structure |
|---|
Probab=94.89 E-value=0.02 Score=46.02 Aligned_cols=30 Identities=10% Similarity=0.138 Sum_probs=26.6
Q ss_pred ccHHHHHHHH-hCCCcEEEEcCCch-HHHHHH
Q psy764 2 ISTLKLFFLQ-FQGHDVIVYDKNTD-ASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~-~~G~~V~~~dr~~~-~~~~l~ 31 (286)
||..+++.|+ +.|++|++.+|+++ +.+.+.
T Consensus 17 iG~~~~~~l~~~~g~~V~~~~r~~~~~~~~~~ 48 (221)
T 3r6d_A 17 IAQXLTATLLTYTDMHITLYGRQLKTRIPPEI 48 (221)
T ss_dssp HHHHHHHHHHHHCCCEEEEEESSHHHHSCHHH
T ss_pred HHHHHHHHHHhcCCceEEEEecCccccchhhc
Confidence 7899999999 89999999999998 776664
|
| >4b4u_A Bifunctional protein fold; oxidoreductase; HET: NAP; 1.45A {Acinetobacter baumannii atcc 19606} PDB: 4b4v_A* 4b4w_A* | Back alignment and structure |
|---|
Probab=94.76 E-value=0.054 Score=45.82 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=30.8
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+..+++||||.++.-+.- +. .+.+++|.+|||.+..
T Consensus 214 ~dl~~~~~~ADIvV~A~G~p~~----i~-----~d~vk~GavVIDVGin 253 (303)
T 4b4u_A 214 QNLPELVKQADIIVGAVGKAEL----IQ-----KDWIKQGAVVVDAGFH 253 (303)
T ss_dssp SSHHHHHHTCSEEEECSCSTTC----BC-----GGGSCTTCEEEECCCB
T ss_pred CCHHHHhhcCCeEEeccCCCCc----cc-----cccccCCCEEEEecee
Confidence 4678899999999999987642 21 2357899999998764
|
| >1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.035 Score=48.40 Aligned_cols=97 Identities=10% Similarity=0.115 Sum_probs=62.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh-cCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS-GAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||...|+.|...|.+|.++|+++++.+...+.|++.. ++.++.. .||+++-|- ...++.. ..++.+ +.++
T Consensus 186 VG~~~A~~l~~~GakVvvsD~~~~~~~~a~~~ga~~v-~~~ell~~~~DIliP~A-----~~~~I~~--~~~~~l-k~~i 256 (355)
T 1c1d_A 186 VGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAV-ALEDVLSTPCDVFAPCA-----MGGVITT--EVARTL-DCSV 256 (355)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CGGGGGGCCCSEEEECS-----CSCCBCH--HHHHHC-CCSE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCccHHHHHHhcCCEEe-ChHHhhcCccceecHhH-----HHhhcCH--HHHhhC-CCCE
Confidence 7899999999999999999999876222233466554 5667776 899987542 2222221 011234 3689
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
|++.+.... +..+-.+.+.++|+.+++
T Consensus 257 Vie~AN~p~-t~~eA~~~L~~~gIlv~P 283 (355)
T 1c1d_A 257 VAGAANNVI-ADEAASDILHARGILYAP 283 (355)
T ss_dssp ECCSCTTCB-CSHHHHHHHHHTTCEECC
T ss_pred EEECCCCCC-CCHHHHHHHHhCCEEEEC
Confidence 999876543 222224667788876664
|
| >3ged_A Short-chain dehydrogenase/reductase SDR; SCOR, rossmann fold, oxidoreductase; 1.70A {Clostridium thermocellum atcc 27405} PDB: 3geg_A* | Back alignment and structure |
|---|
Probab=94.71 E-value=0.046 Score=45.18 Aligned_cols=72 Identities=13% Similarity=0.099 Sum_probs=49.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|.+|.+.||++++.+++.+.+.. +..+-.=+.++++++.++.. +.+...+=+++
T Consensus 14 IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~-----------~~~~~~Dv~~~~~v~~~v~~---~~~~~g~iDiL 79 (247)
T 3ged_A 14 IGKQICLDFLEAGDKVCFIDIDEKRSADFAKERPN-----------LFYFHGDVADPLTLKKFVEY---AMEKLQRIDVL 79 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTCTT-----------EEEEECCTTSHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcCC-----------EEEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999999888777654321 11222235667777777664 44444444677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+...+
T Consensus 80 VNNAG~ 85 (247)
T 3ged_A 80 VNNACR 85 (247)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776543
|
| >1ez4_A Lactate dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.30A {Lactobacillus pentosus} SCOP: c.2.1.5 d.162.1.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.075 Score=45.63 Aligned_cols=58 Identities=16% Similarity=0.157 Sum_probs=42.1
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHH----c-----CCcccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAK----E-----GANMALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~----~-----g~~~~~s~~e~~~~adivi~~v~~~~ 59 (286)
+|++++..|+..++ +|.++|+++++++.... . ..++..+..+++++||+||++.+.+.
T Consensus 16 vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVii~ag~~~ 84 (318)
T 1ez4_A 16 VGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSDCKDADLVVITAGAPQ 84 (318)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGGGTTCSEEEECCCC--
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCchHHHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence 68899999988886 89999999887764221 1 22333355778899999999987653
|
| >2zqz_A L-LDH, L-lactate dehydrogenase; oxidoreductase, rossmann fold, cytoplasm, glycolysis, NAD, phosphoprotein; 2.50A {Lactobacillus casei} PDB: 2zqy_A 3vkv_A* 1llc_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.071 Score=45.93 Aligned_cols=58 Identities=16% Similarity=0.153 Sum_probs=42.5
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHH---c------CCcccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAK---E------GANMALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~---~------g~~~~~s~~e~~~~adivi~~v~~~~ 59 (286)
+|++++..|+..++ +|.++|+++++++.... . ..++..+..+++++||+||++.+.+.
T Consensus 20 vG~~la~~l~~~~~~~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~i~~~~~~a~~~aDvVii~ag~~~ 88 (326)
T 2zqz_A 20 VGSSYAYAMVLQGIAQEIGIVDIFKDKTKGDAIDLSNALPFTSPKKIYSAEYSDAKDADLVVITAGAPQ 88 (326)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGGGCSEEEECCCCC-
T ss_pred HHHHHHHHHHcCCCCCEEEEEeCCchHhHHHHHHHHHHHHhcCCeEEEECCHHHhCCCCEEEEcCCCCC
Confidence 68899999988876 89999999887754322 1 22233355778899999999987653
|
| >2d4a_B Malate dehydrogenase; archaea, hyperthermophIle, oxidoreductase; 2.87A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=94.64 E-value=0.053 Score=46.36 Aligned_cols=80 Identities=14% Similarity=0.182 Sum_probs=53.0
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHH----HH----c--CC--cccCCHHHHhhcCcEEEEecCChh---------
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTL----AK----E--GA--NMALSLSTLASGAEFIISMLPASQ--------- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l----~~----~--g~--~~~~s~~e~~~~adivi~~v~~~~--------- 59 (286)
||++++..|+.+|+ +|.++|+++++++.. .. . .. ..+.+. +++++||+||++.+.+.
T Consensus 10 vG~~~a~~l~~~~l~el~L~Di~~~~~~g~~~dl~~~~~~~~~~~~i~~t~d~-~a~~~aD~Vi~~ag~~~k~G~~r~dl 88 (308)
T 2d4a_B 10 VGMATAVMLMMRGYDDLLLIARTPGKPQGEALDLAHAAAELGVDIRISGSNSY-EDMRGSDIVLVTAGIGRKPGMTREQL 88 (308)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSSTTHHHHHHHHHHHHHHHHTCCCCEEEESCG-GGGTTCSEEEECCSCCCCSSCCTHHH
T ss_pred HHHHHHHHHHhCCCCEEEEEcCChhhHHHHHHHHHHhhhhcCCCeEEEECCCH-HHhCCCCEEEEeCCCCCCCCCcHHHH
Confidence 78999999988888 799999998776432 11 1 22 233565 68899999999976553
Q ss_pred ------HHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 60 ------DVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 60 ------~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
.++++... +.+. .|+.++|..|+
T Consensus 89 ~~~n~~i~~~i~~~---i~~~-~p~a~iiv~tN 117 (308)
T 2d4a_B 89 LEANANTMADLAEK---IKAY-AKDAIVVITTN 117 (308)
T ss_dssp HHHHHHHHHHHHHH---HHHH-CTTCEEEECCS
T ss_pred HHHHHHHHHHHHHH---HHHH-CCCeEEEEeCC
Confidence 14445442 4443 36666666654
|
| >3mtj_A Homoserine dehydrogenase; rossmann-fold, PSI, MCSG, structural genomics, midwest cente structural genomics; 2.15A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.11 Score=46.71 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=66.8
Q ss_pred ccHHHHHHHHh----------CCCc-EEEEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQF----------QGHD-VIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~----------~G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~ 68 (286)
||+.+++.|.+ .+.+ +.++||++++.+.+. .+...++++.++++ +.|+|+.|.|+...-.+..
T Consensus 21 VG~~~~~~L~~~~~~l~~~~g~~i~lvaV~d~~~~~~~~~~-~~~~~~~d~~ell~d~diDvVve~tp~~~~h~~~~--- 96 (444)
T 3mtj_A 21 VGGGTLTVLRRNAEEITRRAGREIRVVRAAVRNLDKAEALA-GGLPLTTNPFDVVDDPEIDIVVELIGGLEPARELV--- 96 (444)
T ss_dssp HHHHHHHHHHHTHHHHHHHHSSCEEEEEEECSCHHHHHHHH-TTCCEESCTHHHHTCTTCCEEEECCCSSTTHHHHH---
T ss_pred HHHHHHHHHHHhHHHHHHhcCCCEEEEEEEECCHHHhhhhc-ccCcccCCHHHHhcCCCCCEEEEcCCCchHHHHHH---
Confidence 56666665543 2344 446699998877663 36778899999987 4789999999632223332
Q ss_pred ccccccCCCCCEEEEcCCC-CchHHHHHHHHHHhcCCceE-eccCCCC
Q psy764 69 DGILKHAKPGVIVIDSSTV-DPQVPQTLSNLAREKQITFL-DAPVSGG 114 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~-~p~~~~~~~~~~~~~g~~~~-~~pv~g~ 114 (286)
...+..|+-|+-.... .....+++.+..+++|..+. .+-+.++
T Consensus 97 ---~~AL~aGKhVvtenkal~a~~~~eL~~~A~~~gv~l~~Ea~V~~g 141 (444)
T 3mtj_A 97 ---MQAIANGKHVVTANKHLVAKYGNEIFAAAQAKGVMVTFEAAVAGG 141 (444)
T ss_dssp ---HHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHTCCEECGGGSSTT
T ss_pred ---HHHHHcCCEEEECCcccCHHHHHHHHHHHHHhCCeEEEEEeeeCC
Confidence 2345678877733221 12334567777777888774 5555554
|
| >4f3y_A DHPR, dihydrodipicolinate reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.38 E-value=0.071 Score=44.68 Aligned_cols=89 Identities=10% Similarity=0.168 Sum_probs=56.3
Q ss_pred ccHHHHHHHHhC-CCcEEE-EcCCchHH-----HHHH--HcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ-GHDVIV-YDKNTDAS-----QTLA--KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~-~dr~~~~~-----~~l~--~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
||+.+++.+.+. ++++.. +||+.+.. ..+. ..|+.+.+++.++++++|+||-+.+ |..+.+.+.
T Consensus 19 MG~~i~~~l~~~~~~eLv~~~d~~~~~~~G~d~gel~g~~~gv~v~~dl~~ll~~~DVVIDfT~-p~a~~~~~~------ 91 (272)
T 4f3y_A 19 MGRMLIEAVLAAPDATLVGALDRTGSPQLGQDAGAFLGKQTGVALTDDIERVCAEADYLIDFTL-PEGTLVHLD------ 91 (272)
T ss_dssp HHHHHHHHHHHCTTEEEEEEBCCTTCTTTTSBTTTTTTCCCSCBCBCCHHHHHHHCSEEEECSC-HHHHHHHHH------
T ss_pred HHHHHHHHHHhCCCCEEEEEEEecCcccccccHHHHhCCCCCceecCCHHHHhcCCCEEEEcCC-HHHHHHHHH------
Confidence 788999888765 566554 79875321 1111 1267778999999999999999887 556555543
Q ss_pred ccCCCCCEEEEcCCCCch-HHHHHHH
Q psy764 73 KHAKPGVIVIDSSTVDPQ-VPQTLSN 97 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~-~~~~~~~ 97 (286)
..+..|.-+|-.||.... ...++.+
T Consensus 92 ~al~~G~~vVigTTG~s~~~~~~L~~ 117 (272)
T 4f3y_A 92 AALRHDVKLVIGTTGFSEPQKAQLRA 117 (272)
T ss_dssp HHHHHTCEEEECCCCCCHHHHHHHHH
T ss_pred HHHHcCCCEEEECCCCCHHHHHHHHH
Confidence 234456666666665433 3334433
|
| >4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.096 Score=45.11 Aligned_cols=95 Identities=14% Similarity=0.178 Sum_probs=64.9
Q ss_pred ccH-HHHHHHHhC-CCcE-EEEcCCchHHHHHHHcCCcccCCHHHHhhc---CcEEEEecCChhHHHHHhcCCccccccC
Q psy764 2 IST-LKLFFLQFQ-GHDV-IVYDKNTDASQTLAKEGANMALSLSTLASG---AEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 2 ~G~-~lA~~L~~~-G~~V-~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~---adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
||. ..+..|.+. +.+| .++|+++++ .|+..++|+++++++ .|+|++|+|+....+.+.. .+
T Consensus 36 ig~~~~~~~l~~~~~~~lvav~d~~~~~------~g~~~~~~~~~ll~~~~~vD~V~i~tp~~~H~~~~~~-------al 102 (330)
T 4ew6_A 36 IVRDQHLPSIAKNANFKLVATASRHGTV------EGVNSYTTIEAMLDAEPSIDAVSLCMPPQYRYEAAYK-------AL 102 (330)
T ss_dssp HHHHTHHHHHHHCTTEEEEEEECSSCCC------TTSEEESSHHHHHHHCTTCCEEEECSCHHHHHHHHHH-------HH
T ss_pred HHHHHHHHHHHhCCCeEEEEEEeCChhh------cCCCccCCHHHHHhCCCCCCEEEEeCCcHHHHHHHHH-------HH
Confidence 344 456666664 5564 567999764 478888999999875 8999999997655444432 34
Q ss_pred CCCCEEE-Ec-CCCCchHHHHHHHHHHhcCCceEec
Q psy764 76 KPGVIVI-DS-STVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 76 ~~g~ivi-d~-st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
..|+-|+ +. -+.+..+.+++.+..+++|..+..+
T Consensus 103 ~aGkhVl~EKP~a~~~~e~~~l~~~a~~~g~~~~v~ 138 (330)
T 4ew6_A 103 VAGKHVFLEKPPGATLSEVADLEALANKQGASLFAS 138 (330)
T ss_dssp HTTCEEEECSSSCSSHHHHHHHHHHHHHHTCCEEEC
T ss_pred HcCCcEEEeCCCCCCHHHHHHHHHHHHhcCCeEEEE
Confidence 4566444 43 1456778888888888888766654
|
| >3guy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structur initiative; 1.90A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=94.29 E-value=0.15 Score=41.21 Aligned_cols=70 Identities=10% Similarity=0.108 Sum_probs=49.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|++++.+.+.+.- -.+..++..=+.++++++.++.. +.. ...++
T Consensus 13 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~v~~~~~~---~~~---~~d~l 76 (230)
T 3guy_A 13 LGAELAKLYDAEGKATYLTGRSESKLSTVTNCL----------SNNVGYRARDLASHQEVEQLFEQ---LDS---IPSTV 76 (230)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTC----------SSCCCEEECCTTCHHHHHHHHHS---CSS---CCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH----------hhccCeEeecCCCHHHHHHHHHH---Hhh---cCCEE
Confidence 799999999999999999999999887765431 12334444556677777777764 322 12677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 77 v~~Ag~ 82 (230)
T 3guy_A 77 VHSAGS 82 (230)
T ss_dssp EECCCC
T ss_pred EEeCCc
Confidence 776654
|
| >2xxj_A L-LDH, L-lactate dehydrogenase; oxidoreductase, hyperthermophIle; HET: NAD; 1.964A {Thermus thermophilus} PDB: 2xxb_A* 3zzn_A* 2v7p_A* 2e37_A* 2v6m_A* 2xxe_A 4a73_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.067 Score=45.75 Aligned_cols=58 Identities=16% Similarity=0.179 Sum_probs=42.0
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHH---c------CCcccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAK---E------GANMALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~---~------g~~~~~s~~e~~~~adivi~~v~~~~ 59 (286)
+|++++..|+.++ .+|.++|+++++++.... . ..++..+..+++++||+||++.+.+.
T Consensus 11 vG~~~a~~l~~~~~~~el~L~Di~~~k~~g~a~dl~~~~~~~~~~~v~~~~~~a~~~aD~Vii~ag~~~ 79 (310)
T 2xxj_A 11 VGSATAYALALLGVAREVVLVDLDRKLAQAHAEDILHATPFAHPVWVWAGSYGDLEGARAVVLAAGVAQ 79 (310)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHTTGGGSCCCEEEECCGGGGTTEEEEEECCCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEeCChhHHHHHHHHHHHhHhhcCCeEEEECCHHHhCCCCEEEECCCCCC
Confidence 6889999998887 589999999887764221 1 12332334677899999999987553
|
| >4fn4_A Short chain dehydrogenase; NADH-binding, rossmann fold, oxidoreductase; HET: NAD; 1.75A {Sulfolobus acidocaldarius} | Back alignment and structure |
|---|
Probab=94.20 E-value=0.074 Score=44.12 Aligned_cols=76 Identities=9% Similarity=0.057 Sum_probs=49.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|.+|.++||++++.+++.+. +.+.-.++..+..=+.++++++.++.. +.+...+=+++
T Consensus 19 IG~aiA~~la~~Ga~Vv~~~~~~~~~~~~~~~-------i~~~g~~~~~~~~Dvt~~~~v~~~~~~---~~~~~G~iDiL 88 (254)
T 4fn4_A 19 IGRAIAKKFALNDSIVVAVELLEDRLNQIVQE-------LRGMGKEVLGVKADVSKKKDVEEFVRR---TFETYSRIDVL 88 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTSHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999999887766432 111111222233335677788877764 44444444678
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+...+
T Consensus 89 VNNAGi 94 (254)
T 4fn4_A 89 CNNAGI 94 (254)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 876543
|
| >3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.14 Score=43.21 Aligned_cols=103 Identities=14% Similarity=0.083 Sum_probs=62.7
Q ss_pred ccHHHHHHHHhC-CCcE-EEEcCCchH-----HHHHH---HcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQFQ-GHDV-IVYDKNTDA-----SQTLA---KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V-~~~dr~~~~-----~~~l~---~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||+.+++.+.+. ++++ -++||++.. +..+. ..|+.+++++++++.++|+||-+.+ |..+.+.+.
T Consensus 33 MGr~i~~~v~~~~~~eLvg~vd~~~~~~~G~d~gel~G~~~~gv~v~~dl~~ll~~aDVvIDFT~-p~a~~~~~~----- 106 (288)
T 3ijp_A 33 MGRELITAIQRRKDVELCAVLVRKGSSFVDKDASILIGSDFLGVRITDDPESAFSNTEGILDFSQ-PQASVLYAN----- 106 (288)
T ss_dssp HHHHHHHHHHTCSSEEEEEEBCCTTCTTTTSBGGGGTTCSCCSCBCBSCHHHHTTSCSEEEECSC-HHHHHHHHH-----
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCCccccccchHHhhccCcCCceeeCCHHHHhcCCCEEEEcCC-HHHHHHHHH-----
Confidence 788888887654 5664 456887431 11222 2478888999999999999998776 555554432
Q ss_pred cccCCCCCEEEEcCCCCch-HHHHHHHHHHhcCCceEeccCCC
Q psy764 72 LKHAKPGVIVIDSSTVDPQ-VPQTLSNLAREKQITFLDAPVSG 113 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~-~~~~~~~~~~~~g~~~~~~pv~g 113 (286)
..+..|.-+|-.||.... ...++.+..++ ..++-+|.+.
T Consensus 107 -~~l~~Gv~vViGTTG~~~e~~~~L~~aa~~--~~~~~a~N~S 146 (288)
T 3ijp_A 107 -YAAQKSLIHIIGTTGFSKTEEAQIADFAKY--TTIVKSGNMS 146 (288)
T ss_dssp -HHHHHTCEEEECCCCCCHHHHHHHHHHHTT--SEEEECSCCC
T ss_pred -HHHHcCCCEEEECCCCCHHHHHHHHHHhCc--CCEEEECCCc
Confidence 234567777776666543 43444444332 3345555443
|
| >3e48_A Putative nucleoside-diphosphate-sugar epimerase; alpha-beta protein., structural genomics, PSI-2, protein STR initiative; 1.60A {Staphylococcus aureus subsp} | Back alignment and structure |
|---|
Probab=93.99 E-value=0.095 Score=43.76 Aligned_cols=56 Identities=7% Similarity=-0.051 Sum_probs=42.6
Q ss_pred ccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHcCCcc-------cCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKEGANM-------ALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|.+. |++|.+.+|++++...+...++.+ .+++.++++++|+||.+...
T Consensus 12 iG~~l~~~L~~~~g~~V~~~~R~~~~~~~~~~~~v~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 75 (289)
T 3e48_A 12 LGTHITNQAIANHIDHFHIGVRNVEKVPDDWRGKVSVRQLDYFNQESMVEAFKGMDTVVFIPSI 75 (289)
T ss_dssp HHHHHHHHHHHTTCTTEEEEESSGGGSCGGGBTTBEEEECCTTCHHHHHHHTTTCSEEEECCCC
T ss_pred HHHHHHHHHhhCCCCcEEEEECCHHHHHHhhhCCCEEEEcCCCCHHHHHHHHhCCCEEEEeCCC
Confidence 799999999988 999999999998766554444322 12356678899999998764
|
| >3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=93.87 E-value=0.1 Score=45.05 Aligned_cols=87 Identities=3% Similarity=-0.034 Sum_probs=57.1
Q ss_pred hCCCcEE-EEcCCc-hHHHHHHH----cC--CcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCCCC-E
Q psy764 12 FQGHDVI-VYDKNT-DASQTLAK----EG--ANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPGV-I 80 (286)
Q Consensus 12 ~~G~~V~-~~dr~~-~~~~~l~~----~g--~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~-i 80 (286)
..+.+|. ++|+++ ++.+.+.+ .| ...++|+++++++ .|+|++|+|+....+.+.. .+..|+ +
T Consensus 22 ~~~~~lvav~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vD~V~I~tp~~~H~~~~~~-------al~aGkhV 94 (337)
T 3ip3_A 22 DEECSITGIAPGVPEEDLSKLEKAISEMNIKPKKYNNWWEMLEKEKPDILVINTVFSLNGKILLE-------ALERKIHA 94 (337)
T ss_dssp CTTEEEEEEECSSTTCCCHHHHHHHHTTTCCCEECSSHHHHHHHHCCSEEEECSSHHHHHHHHHH-------HHHTTCEE
T ss_pred CCCcEEEEEecCCchhhHHHHHHHHHHcCCCCcccCCHHHHhcCCCCCEEEEeCCcchHHHHHHH-------HHHCCCcE
Confidence 4456655 679887 44444433 24 4678999999874 8999999997655444433 244555 4
Q ss_pred EEEc-CCCCchHHHHHHHHHHhcCCc
Q psy764 81 VIDS-STVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 81 vid~-st~~p~~~~~~~~~~~~~g~~ 105 (286)
+++. -+.+..+.+++.+..++.|..
T Consensus 95 l~EKPla~~~~ea~~l~~~a~~~g~~ 120 (337)
T 3ip3_A 95 FVEKPIATTFEDLEKIRSVYQKVRNE 120 (337)
T ss_dssp EECSSSCSSHHHHHHHHHHHHHHTTT
T ss_pred EEeCCCCCCHHHHHHHHHHHHHhCCc
Confidence 4443 245567888888888877765
|
| >3n74_A 3-ketoacyl-(acyl-carrier-protein) reductase; seattle structural genomics center for infectious disease, S brucellosis; 2.20A {Brucella melitensis biovar abortus} | Back alignment and structure |
|---|
Probab=93.86 E-value=0.094 Score=43.21 Aligned_cols=73 Identities=15% Similarity=0.190 Sum_probs=47.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|+++|++|++.+|++++.+++.+. .-.....+..=+.+.++++.++.. +.+...+=+++
T Consensus 21 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~l 87 (261)
T 3n74_A 21 FGEGMAKRFAKGGAKVVIVDRDKAGAERVAGE----------IGDAALAVAADISKEADVDAAVEA---ALSKFGKVDIL 87 (261)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCTTEEEEECCTTSHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH----------hCCceEEEEecCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 79999999999999999999999888776542 001222333345666667766653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 88 i~~Ag~ 93 (261)
T 3n74_A 88 VNNAGI 93 (261)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 776554
|
| >4aj2_A L-lactate dehydrogenase A chain; oxidoreductase-inhibitor complex, fragment-based LEAD genera inhibitors; HET: 52C; 1.75A {Rattus norvegicus} PDB: 4aj1_A* 4aje_A* 4ajh_A* 4aji_A* 4ajj_A* 4ajk_A* 4ajl_A* 4ajn_A* 4ajo_A* 4al4_A* 4aj4_A* 4ajp_A* 1i10_A* 3h3f_A* 9ldt_A* 9ldb_A* 1t2f_A* 1i0z_A* 5ldh_A* 1ldm_A* ... | Back alignment and structure |
|---|
Probab=93.76 E-value=0.098 Score=45.14 Aligned_cols=56 Identities=11% Similarity=0.107 Sum_probs=41.1
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHH----HHHc-------CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQT----LAKE-------GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~~-------g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||.++|..|+.+|+ +|.++|+++++++. +... .+....+++ .+++||+||++...+
T Consensus 30 vG~~~a~~l~~~~~~~el~L~Di~~~~~~g~a~DL~~~~~~~~~~~i~~~~d~~-~~~~aDiVvi~aG~~ 98 (331)
T 4aj2_A 30 VGMACAISILMKDLADELALVDVIEDKLKGEMMDLQHGSLFLKTPKIVSSKDYS-VTANSKLVIITAGAR 98 (331)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCSCCEEEECSSGG-GGTTEEEEEECCSCC
T ss_pred HHHHHHHHHHhCCCCceEEEEeCChHHHHHHHHhhhhhhhccCCCeEEEcCCHH-HhCCCCEEEEccCCC
Confidence 78999999999997 89999999887654 3221 112244555 589999999997543
|
| >2q3e_A UDP-glucose 6-dehydrogenase; hexamer, structural genomics, S genomics consortium, SGC, oxidoreductase; HET: NAD UPG; 2.00A {Homo sapiens} PDB: 2qg4_A* 3khu_A* 3itk_A* 3tdk_A* 3ptz_A* 3prj_A* 3tf5_A | Back alignment and structure |
|---|
Probab=93.72 E-value=0.11 Score=47.08 Aligned_cols=98 Identities=12% Similarity=0.054 Sum_probs=61.5
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHH--HHH-----------HcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQ--TLA-----------KEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~--~l~-----------~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
..+++.|.+.|.+|.+||......+ ... ..++..++++.++++++|+|++++.++ +.+.+-. +.
T Consensus 352 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~-~f~~~~~--~~ 428 (467)
T 2q3e_A 352 IYISKYLMDEGAHLHIYDPKVPREQIVVDLSHPGVSEDDQVSRLVTISKDPYEACDGAHAVVICTEWD-MFKELDY--ER 428 (467)
T ss_dssp HHHHHHHHHTTCEEEEECSSSCHHHHHHHHCC------CHHHHHEEECSSHHHHHTTCSEEEECSCCG-GGGGSCH--HH
T ss_pred HHHHHHHHHCCCEEEEEcCccCHHHHhhhhccccccccccccCceeecCCHHHHHhCCcEEEEecCCh-hhhcCCH--HH
Confidence 3578899999999999998632211 110 013456678899999999999999985 4433210 11
Q ss_pred ccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+...++...+|+|.-.+.... .+.+.+.|+.|..
T Consensus 429 ~~~~~~~~~~i~D~r~~~~~~----~~~~~~~g~~~~~ 462 (467)
T 2q3e_A 429 IHKKMLKPAFIFDGRRVLDGL----HNELQTIGFQIET 462 (467)
T ss_dssp HHHHSCSSCEEEESSCTTTTC----HHHHHHHTCEEEE
T ss_pred HHHhcCCCCEEEeCCCcCCch----HHHHHhcCcEEEE
Confidence 333344455699987765431 1234556777764
|
| >4a7p_A UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide; HET: NAD; 3.40A {Sphingomonas elodea} | Back alignment and structure |
|---|
Probab=93.66 E-value=0.082 Score=47.60 Aligned_cols=93 Identities=14% Similarity=0.121 Sum_probs=62.1
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHH--cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAK--EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~--~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
..+++.|.+.|.+|.+||.... +...+ .++..++++.++++++|+|++++.+++ .+++-. +.+.+.+ ++.+|
T Consensus 345 ~~i~~~L~~~g~~v~~~DP~~~--~~~~~~~~~~~~~~~~~~~~~~ad~vvi~t~~~~-f~~~d~--~~~~~~~-~~~~i 418 (446)
T 4a7p_A 345 LSIIAALQDAGATVKAYDPEGV--EQASKMLTDVEFVENPYAAADGADALVIVTEWDA-FRALDL--TRIKNSL-KSPVL 418 (446)
T ss_dssp HHHHHHHHHTSCEEEEECSSCH--HHHGGGCSSCCBCSCHHHHHTTBSEEEECSCCTT-TTSCCH--HHHHTTB-SSCBE
T ss_pred HHHHHHHHHCCCEEEEECCCCC--HhHHHhcCCceEecChhHHhcCCCEEEEeeCCHH-hhcCCH--HHHHHhc-CCCEE
Confidence 4578899999999999998753 22222 267788899999999999999998753 222110 0122222 35789
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+|.-.+.... .+.+.|+.|..
T Consensus 419 ~D~r~~~~~~------~~~~~g~~y~~ 439 (446)
T 4a7p_A 419 VDLRNIYPPA------ELERAGLQYTG 439 (446)
T ss_dssp ECSSCCSCHH------HHHHTTCBCCC
T ss_pred EECCCCCCHH------HHHhcCCEEEE
Confidence 9987776532 33566777753
|
| >1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.021 Score=45.01 Aligned_cols=26 Identities=15% Similarity=0.073 Sum_probs=23.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDAS 27 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~ 27 (286)
+|+.+++.|+++|++|++.+|++++.
T Consensus 15 iG~~l~~~l~~~g~~V~~~~r~~~~~ 40 (206)
T 1hdo_A 15 TGLTTLAQAVQAGYEVTVLVRDSSRL 40 (206)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCGGGS
T ss_pred HHHHHHHHHHHCCCeEEEEEeChhhc
Confidence 68999999999999999999998764
|
| >3ftp_A 3-oxoacyl-[acyl-carrier protein] reductase; ssgcid, 3-ketoacyl-(acyl-carrier- protein) reductase, oxidoreductase, structural genomics; 2.05A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=93.50 E-value=0.15 Score=42.49 Aligned_cols=76 Identities=11% Similarity=0.068 Sum_probs=48.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+.+.+. ..+.-.+...+..=+.++.+++.++.. +.+...+=+++
T Consensus 40 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 109 (270)
T 3ftp_A 40 IGRAIALELARRGAMVIGTATTEAGAEGIGAA-------FKQAGLEGRGAVLNVNDATAVDALVES---TLKEFGALNVL 109 (270)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHHTCCCEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEEeCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998877665432 111111233344445666777776653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++..+
T Consensus 110 vnnAg~ 115 (270)
T 3ftp_A 110 VNNAGI 115 (270)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776543
|
| >3f1l_A Uncharacterized oxidoreductase YCIK; E. coli, NADP+,; 0.95A {Escherichia coli K12} SCOP: c.2.1.0 PDB: 3f1k_A 3e9q_A* 3f5q_A 3gz4_A* 3f5s_A 3gy0_A* 3iah_A* 3g1t_A | Back alignment and structure |
|---|
Probab=93.49 E-value=0.16 Score=41.71 Aligned_cols=76 Identities=14% Similarity=0.121 Sum_probs=47.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEec--CChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISML--PASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v--~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. +.+.- ..+.++..-+ .++.+++.++.. +.....+=
T Consensus 24 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~---~~~~~g~i 93 (252)
T 3f1l_A 24 IGREAAMTYARYGATVILLGRNEEKLRQVASH-------INEETGRQPQWFILDLLTCTSENCQQLAQR---IAVNYPRL 93 (252)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHHSCCCEEEECCTTTCCHHHHHHHHHH---HHHHCSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhhcCCCceEEEEecccCCHHHHHHHHHH---HHHhCCCC
Confidence 79999999999999999999998887665432 11111 1333344444 556666666653 33333344
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
+++|+....
T Consensus 94 d~lv~nAg~ 102 (252)
T 3f1l_A 94 DGVLHNAGL 102 (252)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 677776654
|
| >3asu_A Short-chain dehydrogenase/reductase SDR; SDR family, rossmann-fold, short-chain dehydrogenase/reducta ALLO-threonine dehydrogenase; 1.90A {Escherichia coli} PDB: 3asv_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.24 Score=40.51 Aligned_cols=72 Identities=14% Similarity=0.099 Sum_probs=48.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. + .+...+..=+.++++++.++.. +.+...+=++
T Consensus 12 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iD~ 77 (248)
T 3asu_A 12 FGECITRRFIQQGHKVIATGRRQERLQELKDELG-----------DNLYIAQLDVRNRAAIEEMLAS---LPAEWCNIDI 77 (248)
T ss_dssp THHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----------TTEEEEECCTTCHHHHHHHHHT---SCTTTCCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc-----------CceEEEEcCCCCHHHHHHHHHH---HHHhCCCCCE
Confidence 79999999999999999999998877665432 1 1222333345666777777764 3333333467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 78 lvnnAg~ 84 (248)
T 3asu_A 78 LVNNAGL 84 (248)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 8877654
|
| >3gg2_A Sugar dehydrogenase, UDP-glucose/GDP-mannose dehydrogenase family; structural genomics, oxidoreductase, PSI-2; HET: UGA; 1.70A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.088 Score=47.48 Aligned_cols=93 Identities=17% Similarity=0.132 Sum_probs=59.3
Q ss_pred HHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEE
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
..+++.|.+.|.+|.+||..... ........+..++++.++++++|.|++++.+++ .+++-. +.+.+.+ ++.+|+
T Consensus 341 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~-f~~~~~--~~~~~~~-~~~~i~ 416 (450)
T 3gg2_A 341 LVLIEKLLEVGCRVRVYDPVAMKEAQKRLGDKVEYTTDMYDAVRGAEALFHVTEWKE-FRMPDW--SALSQAM-AASLVI 416 (450)
T ss_dssp HHHHHHHHHTTCEEEEECSSCHHHHHHHHGGGSEECSSHHHHTTTCSCEEECSCCGG-GSSCCH--HHHHHHS-SSCEEE
T ss_pred HHHHHHHHHCCCEEEEECCCCcHHHHHhcCccceecCCHHHHhcCCCEEEEccCCHH-HhhcCH--HHHHHhc-CCCEEE
Confidence 35788999999999999987532 222111236777899999999999999999863 322100 0122222 367899
Q ss_pred EcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 83 DSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 83 d~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
|.-.+.... .+.|+.|..
T Consensus 417 D~r~~~~~~--------~~~g~~y~~ 434 (450)
T 3gg2_A 417 DGRNVYELP--------ADSDFTLLN 434 (450)
T ss_dssp ESSCCCCCC------------CEEEE
T ss_pred ECCCCCChH--------HhCCCEEEE
Confidence 988776543 245777764
|
| >3r1i_A Short-chain type dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.95A {Mycobacterium marinum} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.14 Score=42.82 Aligned_cols=76 Identities=18% Similarity=0.137 Sum_probs=48.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. +.+.-.++..+-.=+.++++++.++.. +.+...+=+++
T Consensus 44 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~d~~~v~~~~~~---~~~~~g~iD~l 113 (276)
T 3r1i_A 44 IGKKVALAYAEAGAQVAVAARHSDALQVVADE-------IAGVGGKALPIRCDVTQPDQVRGMLDQ---MTGELGGIDIA 113 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH-------HHHTTCCCEEEECCTTCHHHHHHHHHH---HHHHHSCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCeEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998887665432 111111222333345666677777653 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 114 vnnAg~ 119 (276)
T 3r1i_A 114 VCNAGI 119 (276)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776554
|
| >3vtf_A UDP-glucose 6-dehydrogenase; two discrete alpha/beta domains, oxidoreducta; HET: UPG; 2.00A {Pyrobaculum islandicum} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.26 Score=44.19 Aligned_cols=74 Identities=16% Similarity=0.118 Sum_probs=53.7
Q ss_pred HHHHHHHHhCCCcEEEEcCCc-hHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEE
Q psy764 4 TLKLFFLQFQGHDVIVYDKNT-DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVI 82 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~-~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivi 82 (286)
..+++.|.+.|.+|.+||... +.........+..++++.++++++|.|++++.++ +.+.+ + -++++|+
T Consensus 356 ~~ii~~L~~~Ga~V~~~DP~~~~~~~~~~~~~~~~~~~~~~a~~~aDavvi~t~h~-ef~~l--------d--~~~~vv~ 424 (444)
T 3vtf_A 356 VEVARLLLERGARVYVHDPMAMEKARAVLGDSVTYVEDPQALLDQVEGVIIATAWP-QYEGL--------D--YRGKVVV 424 (444)
T ss_dssp HHHHHHHHHTTCEEEEECSSTHHHHHHHHGGGSEECSCHHHHHHHCSEEEECSCCG-GGGGS--------C--CTTCEEE
T ss_pred HHHHHHHHHCCCEEEEECCCCChHHHHhcCCCceecCCHHHHHhCCCEEEEccCCH-HHhCC--------C--cCCCEEE
Confidence 357889999999999999763 2222333345778899999999999999999986 33322 1 1568999
Q ss_pred EcCCCC
Q psy764 83 DSSTVD 88 (286)
Q Consensus 83 d~st~~ 88 (286)
|.=.+.
T Consensus 425 D~Rni~ 430 (444)
T 3vtf_A 425 DGRYVK 430 (444)
T ss_dssp ESSCCG
T ss_pred ECCCCC
Confidence 976553
|
| >3ucx_A Short chain dehydrogenase; ssgcid, seattle structural genomics center for infectious DI dehydrogenase, oxidoreductase; HET: 1PE; 1.85A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=93.37 E-value=0.13 Score=42.65 Aligned_cols=76 Identities=16% Similarity=0.127 Sum_probs=48.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+.+.+. +.+.-.+...+-.=+.++.+++.++.. +.+...+=+++
T Consensus 23 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id~l 92 (264)
T 3ucx_A 23 LGTTLARRCAEQGADLVLAARTVERLEDVAKQ-------VTDTGRRALSVGTDITDDAQVAHLVDE---TMKAYGRVDVV 92 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHTSCCSEE
T ss_pred HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHHcCCCcEE
Confidence 79999999999999999999998887665432 111111222333345666777776653 44333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 93 v~nAg~ 98 (264)
T 3ucx_A 93 INNAFR 98 (264)
T ss_dssp EECCCS
T ss_pred EECCCC
Confidence 776643
|
| >4g81_D Putative hexonate dehydrogenase; enzyme function initiative, EFI, structural genomics, dehydr oxidoreductase; 1.90A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=93.33 E-value=0.11 Score=43.16 Aligned_cols=74 Identities=14% Similarity=0.051 Sum_probs=47.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|+++|.+|.+.||++++.++..+. +.+ ...++.. .=+.++++++.++.. +.+...+=+
T Consensus 21 IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~-------l~~--~g~~~~~~~~Dv~~~~~v~~~~~~---~~~~~G~iD 88 (255)
T 4g81_D 21 LGFAYAEGLAAAGARVILNDIRATLLAESVDT-------LTR--KGYDAHGVAFDVTDELAIEAAFSK---LDAEGIHVD 88 (255)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHH-------HHH--TTCCEEECCCCTTCHHHHHHHHHH---HHHTTCCCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEeeCCCHHHHHHHHHH---HHHHCCCCc
Confidence 79999999999999999999998877655332 000 0112222 124567777777764 444444446
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|+...+
T Consensus 89 iLVNNAG~ 96 (255)
T 4g81_D 89 ILINNAGI 96 (255)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 77776543
|
| >1j5p_A Aspartate dehydrogenase; TM1643, structural genomics, JCSG, protein structure initiative, joint center for structural G oxidoreductase; HET: NAD; 1.90A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.3 PDB: 1h2h_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.064 Score=44.30 Aligned_cols=97 Identities=15% Similarity=0.105 Sum_probs=64.6
Q ss_pred ccHHHHHHHHhCCCcE-EEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDV-IVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V-~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||+.+++. . ++++ .+|+ +|..++ |+..+++++++++++|+|+-|-+ ++++++... +.|..|+-
T Consensus 23 IG~~v~~~--~-~leLv~v~~---~k~gel---gv~a~~d~d~lla~pD~VVe~A~-~~av~e~~~------~iL~aG~d 86 (253)
T 1j5p_A 23 IGKKLVEL--G-NFEKIYAYD---RISKDI---PGVVRLDEFQVPSDVSTVVECAS-PEAVKEYSL------QILKNPVN 86 (253)
T ss_dssp HHHHHHHH--S-CCSEEEEEC---SSCCCC---SSSEECSSCCCCTTCCEEEECSC-HHHHHHHHH------HHTTSSSE
T ss_pred HHHHHHhc--C-CcEEEEEEe---cccccc---CceeeCCHHHHhhCCCEEEECCC-HHHHHHHHH------HHHHCCCC
Confidence 67777776 4 7775 6778 444333 77788889999889999999976 567777432 34678888
Q ss_pred EEEcCCC---CchHHHHHHHHHHhcCCce-EeccCCCC
Q psy764 81 VIDSSTV---DPQVPQTLSNLAREKQITF-LDAPVSGG 114 (286)
Q Consensus 81 vid~st~---~p~~~~~~~~~~~~~g~~~-~~~pv~g~ 114 (286)
++-+|.. .+...+++.+.+++.|..+ +.....+|
T Consensus 87 vv~~S~gaLad~~l~~~L~~aA~~gg~~l~vpSGAi~G 124 (253)
T 1j5p_A 87 YIIISTSAFADEVFRERFFSELKNSPARVFFPSGAIGG 124 (253)
T ss_dssp EEECCGGGGGSHHHHHHHHHHHHTCSCEEECCCTTCCC
T ss_pred EEEcChhhhcCHHHHHHHHHHHHHCCCeEEecCCcccc
Confidence 8877765 3444556666666666553 43333443
|
| >4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.051 Score=49.22 Aligned_cols=58 Identities=16% Similarity=0.201 Sum_probs=43.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcc-cC------CHHHH-hhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANM-AL------SLSTL-ASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~-~~------s~~e~-~~~adivi~~v~~~~ 59 (286)
+|..+|+.|.+.||+|++.|+++++++.+.+. ++.+ .. .+.++ +++||+++.+.+++.
T Consensus 14 vG~~la~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~i~Gd~~~~~~L~~Agi~~ad~~ia~t~~De 80 (461)
T 4g65_A 14 VGGTLAENLVGENNDITIVDKDGDRLRELQDKYDLRVVNGHASHPDVLHEAGAQDADMLVAVTNTDE 80 (461)
T ss_dssp HHHHHHHHTCSTTEEEEEEESCHHHHHHHHHHSSCEEEESCTTCHHHHHHHTTTTCSEEEECCSCHH
T ss_pred HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCcEEEEEcCCCHHHHHhcCCCcCCEEEEEcCChH
Confidence 68999999999999999999999999988753 4322 11 13333 578998887777653
|
| >3eag_A UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-ME diaminopimelate ligase; UDP-N-acetylmuramate:L-alanyl-G glutamyl-MESO-diaminopimelate ligase; 2.55A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=93.28 E-value=0.1 Score=44.94 Aligned_cols=54 Identities=15% Similarity=0.034 Sum_probs=40.1
Q ss_pred ccH-HHHHHHHhCCCcEEEEcCCc--hHHHHHHHcCCccc--CCHHHHh-hcCcEEEEec
Q psy764 2 IST-LKLFFLQFQGHDVIVYDKNT--DASQTLAKEGANMA--LSLSTLA-SGAEFIISML 55 (286)
Q Consensus 2 ~G~-~lA~~L~~~G~~V~~~dr~~--~~~~~l~~~g~~~~--~s~~e~~-~~adivi~~v 55 (286)
+|. ++|+.|.+.|++|+++|+++ ...+.|.+.|+.+. .++.++. .++|+||.+-
T Consensus 15 ~Gms~~A~~L~~~G~~V~~~D~~~~~~~~~~L~~~gi~v~~g~~~~~l~~~~~d~vV~Sp 74 (326)
T 3eag_A 15 TFMGGLAAIAKEAGFEVSGCDAKMYPPMSTQLEALGIDVYEGFDAAQLDEFKADVYVIGN 74 (326)
T ss_dssp HHHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHHTTCEEEESCCGGGGGSCCCSEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEEcCCCCcHHHHHHHhCCCEEECCCCHHHcCCCCCCEEEECC
Confidence 355 48889999999999999864 34567888888765 3455555 5799999863
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=93.24 E-value=0.19 Score=41.03 Aligned_cols=76 Identities=17% Similarity=0.148 Sum_probs=47.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. ..+.-....++..=+.++++++.++.. +.+...+=+++
T Consensus 21 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~l 90 (253)
T 3qiv_A 21 IGQAYAEALAREGAAVVVADINAEAAEAVAKQ-------IVADGGTAISVAVDVSDPESAKAMADR---TLAEFGGIDYL 90 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCEEEEEECCTTSHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998887665432 011011222333334566667766653 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 91 i~~Ag~ 96 (253)
T 3qiv_A 91 VNNAAI 96 (253)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 776654
|
| >3tfo_A Putative 3-oxoacyl-(acyl-carrier-protein) reducta; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.08A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.13 Score=42.71 Aligned_cols=76 Identities=11% Similarity=0.058 Sum_probs=46.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|++|.+.+|++++.+.+.+. +.+.-.....+..=+.++++++.++.. +.+...+=+++
T Consensus 16 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 85 (264)
T 3tfo_A 16 IGEGIARELGVAGAKILLGARRQARIEAIATE-------IRDAGGTALAQVLDVTDRHSVAAFAQA---AVDTWGRIDVL 85 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHTTCEEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998887665432 111101122222335566667766653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++..+
T Consensus 86 VnnAG~ 91 (264)
T 3tfo_A 86 VNNAGV 91 (264)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776544
|
| >3op4_A 3-oxoacyl-[acyl-carrier protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase; HET: MSE NAP; 1.60A {Vibrio cholerae o1 biovar el tor} SCOP: c.2.1.2 PDB: 3rsh_A* 3rro_A* 4i08_A* 3tzk_A 3tzc_A* 3u09_A 3tzh_A 1q7b_A* 1i01_A* 1q7c_A* 2cf2_E | Back alignment and structure |
|---|
Probab=93.16 E-value=0.17 Score=41.48 Aligned_cols=73 Identities=12% Similarity=0.129 Sum_probs=47.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+.+.+. .-.....+-+=+.++++++.++.. +.+...+=+++
T Consensus 21 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 87 (248)
T 3op4_A 21 IGKAIAELLAERGAKVIGTATSESGAQAISDY----------LGDNGKGMALNVTNPESIEAVLKA---ITDEFGGVDIL 87 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHHHH---HHHHHCCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hcccceEEEEeCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998887766432 011122333345666777777653 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++..+
T Consensus 88 v~nAg~ 93 (248)
T 3op4_A 88 VNNAGI 93 (248)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776654
|
| >4fgs_A Probable dehydrogenase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, three layer; 1.76A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.13 Score=43.14 Aligned_cols=71 Identities=15% Similarity=0.117 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|++.|.+|.+.+|+++++++..+. |. ++-.+-.=+.++++++.++.. +.+...+=++
T Consensus 41 IG~aiA~~la~~Ga~V~i~~r~~~~l~~~~~~~g~-----------~~~~~~~Dv~~~~~v~~~~~~---~~~~~G~iDi 106 (273)
T 4fgs_A 41 IGLAAAKRFVAEGARVFITGRRKDVLDAAIAEIGG-----------GAVGIQADSANLAELDRLYEK---VKAEAGRIDV 106 (273)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCT-----------TCEEEECCTTCHHHHHHHHHH---HHHHHSCEEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCC-----------CeEEEEecCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999999999999988766433 21 222222335667777777654 3333322245
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
+|+...
T Consensus 107 LVNNAG 112 (273)
T 4fgs_A 107 LFVNAG 112 (273)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 665543
|
| >1uls_A Putative 3-oxoacyl-acyl carrier protein reductase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.40A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.17 Score=41.29 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=46.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+.+.+.- +...+..=+.++++++.++.. +.+...+=+++
T Consensus 17 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~------------~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~l 81 (245)
T 1uls_A 17 IGRATLELFAKEGARLVACDIEEGPLREAAEAV------------GAHPVVMDVADPASVERGFAE---ALAHLGRLDGV 81 (245)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------------TCEEEECCTTCHHHHHHHHHH---HHHHHSSCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc------------CCEEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999988776664321 122333335566666666653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 82 vn~Ag~ 87 (245)
T 1uls_A 82 VHYAGI 87 (245)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776554
|
| >3lyl_A 3-oxoacyl-(acyl-carrier-protein) reductase; alpha and beta protein, NAD(P)-binding rossmann fold, csgid, oxidoreductase; 1.95A {Francisella tularensis subsp} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=93.12 E-value=0.19 Score=40.99 Aligned_cols=77 Identities=9% Similarity=0.105 Sum_probs=48.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. ..+.-.+...+-.=+.++++++.++.. +.+...+=+++
T Consensus 17 IG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 86 (247)
T 3lyl_A 17 IGFEVAHALASKGATVVGTATSQASAEKFENS-------MKEKGFKARGLVLNISDIESIQNFFAE---IKAENLAIDIL 86 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHTTCCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCceEEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998877665432 011101222333345666677776653 33333344678
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|++....
T Consensus 87 i~~Ag~~ 93 (247)
T 3lyl_A 87 VNNAGIT 93 (247)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 8776543
|
| >4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A | Back alignment and structure |
|---|
Probab=93.00 E-value=0.19 Score=41.42 Aligned_cols=72 Identities=17% Similarity=0.157 Sum_probs=47.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++++.|+++|++|.+.+|++++.+.+.+. + .....+-.=+.++++++.++.. +.+...+=++
T Consensus 20 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id~ 85 (259)
T 4e6p_A 20 IGRAFAEAYVREGATVAIADIDIERARQAAAEIG-----------PAAYAVQMDVTRQDSIDAAIAA---TVEHAGGLDI 85 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHC-----------TTEEEEECCTTCHHHHHHHHHH---HHHHSSSCCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----------CCceEEEeeCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999999999999887766432 1 1122333335566667766653 3333334467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 86 lv~~Ag~ 92 (259)
T 4e6p_A 86 LVNNAAL 92 (259)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 7776654
|
| >2jl1_A Triphenylmethane reductase; oxidoreductase, bioremediation; HET: NAP GOL; 1.96A {Citrobacter SP} PDB: 2vrb_A* 2vrc_A 2vrc_D | Back alignment and structure |
|---|
Probab=92.99 E-value=0.064 Score=44.73 Aligned_cols=55 Identities=20% Similarity=0.282 Sum_probs=41.8
Q ss_pred ccHHHHHHHHhC--CCcEEEEcCCchHHHHHHHcCCccc-------CCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQ--GHDVIVYDKNTDASQTLAKEGANMA-------LSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~g~~~~-------~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|++. ||+|++.+|++++.+.+...++... +++.++++++|+||-+..
T Consensus 12 iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 75 (287)
T 2jl1_A 12 LGGLVIQHLLKKVPASQIIAIVRNVEKASTLADQGVEVRHGDYNQPESLQKAFAGVSKLLFISG 75 (287)
T ss_dssp HHHHHHHHHTTTSCGGGEEEEESCTTTTHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHHhCCCCeEEEEEcCHHHHhHHhhcCCeEEEeccCCHHHHHHHHhcCCEEEEcCC
Confidence 689999999998 9999999999888776655453221 234566778998888765
|
| >4dqx_A Probable oxidoreductase protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=92.92 E-value=0.14 Score=42.73 Aligned_cols=72 Identities=18% Similarity=0.160 Sum_probs=46.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|+++|++|.+.+|++++.+.+.+. +. +...+-.=+.++++++.++.. +.+...+=++
T Consensus 39 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~ 104 (277)
T 4dqx_A 39 IGRATAELFAKNGAYVVVADVNEDAAVRVANEIGS-----------KAFGVRVDVSSAKDAESMVEK---TTAKWGRVDV 104 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHCT-----------TEEEEECCTTCHHHHHHHHHH---HHHHHSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC-----------ceEEEEecCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999999999999887766543 11 112222234566666666653 3333333456
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 105 lv~nAg~ 111 (277)
T 4dqx_A 105 LVNNAGF 111 (277)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 7776543
|
| >2o3j_A UDP-glucose 6-dehydrogenase; structural genomics, PSI-2, prote structure initiative, NEW YORK SGX research center for STRU genomics; 1.88A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=92.88 E-value=0.19 Score=45.70 Aligned_cols=96 Identities=17% Similarity=0.139 Sum_probs=61.8
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHH---HHHHH--------cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDAS---QTLAK--------EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~---~~l~~--------~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
..+++.|.+.|.+|.+||...+.. +.... ..+..++++.++++++|+|++++.++ +.+.+-. +.+.
T Consensus 358 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~-~f~~~~~--~~~~ 434 (481)
T 2o3j_A 358 IHVIKHLMEEHAKLSVYDPKVQKSQMLNDLASVTSAQDVERLITVESDPYAAARGAHAIVVLTEWD-EFVELNY--SQIH 434 (481)
T ss_dssp HHHHHHHHHTTCEEEEECSSSCHHHHHHHHHHHSCHHHHHHHEEEESSHHHHHTTCSEEEECSCCG-GGTTSCH--HHHH
T ss_pred HHHHHHHHHCCCEEEEECCCCCchhhHHHHHhhhccccccCceeecCCHHHHHcCCCEEEEcCCcH-HhhccCH--HHHH
Confidence 357888999999999999864321 12211 12455678889999999999999985 3333210 1133
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
..++...+|+|.-.+... +.+.+.|+.|..
T Consensus 435 ~~~~~~~~i~D~r~~~~~------~~~~~~g~~~~~ 464 (481)
T 2o3j_A 435 NDMQHPAAIFDGRLILDQ------KALREIGFRTFA 464 (481)
T ss_dssp HHSCSSCEEEESSSCSCH------HHHHHHTCEEEE
T ss_pred HhcCCCCEEEECCCCCCH------HHHHhcCcEEEE
Confidence 334455689998777642 124556887765
|
| >3ak4_A NADH-dependent quinuclidinone reductase; SDR, (R)-3-quinuclidinol, chiral alcohol, oxidoreductase; HET: NAD; 2.00A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.21 Score=41.10 Aligned_cols=73 Identities=15% Similarity=0.061 Sum_probs=45.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. .. .+...+-.=+.++.+++.++.. +.+...+=+++
T Consensus 24 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~---------~~~~~~~~D~~d~~~v~~~~~~---~~~~~g~iD~l 90 (263)
T 3ak4_A 24 IGAAIARALDKAGATVAIADLDVMAAQAVVAG-LE---------NGGFAVEVDVTKRASVDAAMQK---AIDALGGFDLL 90 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-CT---------TCCEEEECCTTCHHHHHHHHHH---HHHHHTCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-Hh---------cCCeEEEEeCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998877665432 10 0222333335566666666543 32222233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 91 v~~Ag~ 96 (263)
T 3ak4_A 91 CANAGV 96 (263)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 776543
|
| >2r6j_A Eugenol synthase 1; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, plant protein; HET: NDP; 1.50A {Ocimum basilicum} PDB: 2qys_A 2qx7_A* 2qzz_A* 2r2g_A* 3c3x_A* 2qw8_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.14 Score=43.50 Aligned_cols=56 Identities=20% Similarity=0.195 Sum_probs=41.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-HHHH---HHHcCCccc-------CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-ASQT---LAKEGANMA-------LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-~~~~---l~~~g~~~~-------~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|++.|++|++.+|+++ +.+. +...|+.+. +++.++++++|+||.+.+.
T Consensus 23 iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~l~~~~v~~v~~Dl~d~~~l~~a~~~~d~vi~~a~~ 89 (318)
T 2r6j_A 23 IGNHMVKGSLKLGHPTYVFTRPNSSKTTLLDEFQSLGAIIVKGELDEHEKLVELMKKVDVVISALAF 89 (318)
T ss_dssp THHHHHHHHHHTTCCEEEEECTTCSCHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred HHHHHHHHHHHCCCcEEEEECCCCchhhHHHHhhcCCCEEEEecCCCHHHHHHHHcCCCEEEECCch
Confidence 799999999999999999999874 3332 334454321 2456678899999998863
|
| >3imf_A Short chain dehydrogenase; structural genomics, infectious D center for structural genomics of infectious diseases, oxidoreductase, csgid; HET: MSE; 1.99A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=92.79 E-value=0.12 Score=42.69 Aligned_cols=76 Identities=9% Similarity=0.021 Sum_probs=48.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|++++.+.+.+.- ... -.+..++-.=+.++++++.++.. +.+...+=+++
T Consensus 18 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~~------~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id~l 87 (257)
T 3imf_A 18 MGKGMATRFAKEGARVVITGRTKEKLEEAKLEI-EQF------PGQILTVQMDVRNTDDIQKMIEQ---IDEKFGRIDIL 87 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-CCS------TTCEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-Hhc------CCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999998877665320 000 01222333345666677776653 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 88 v~nAg~ 93 (257)
T 3imf_A 88 INNAAG 93 (257)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776553
|
| >2zcu_A Uncharacterized oxidoreductase YTFG; alpha-beta sandwich; 1.80A {Escherichia coli} PDB: 2zcv_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.063 Score=44.69 Aligned_cols=55 Identities=16% Similarity=0.257 Sum_probs=41.0
Q ss_pred ccHHHHHHHHhC--CCcEEEEcCCchHHHHHHHcCCccc-------CCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQ--GHDVIVYDKNTDASQTLAKEGANMA-------LSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~g~~~~-------~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|++. |++|++.+|++++.+.+...++... +++.++++++|+||-+..
T Consensus 11 iG~~l~~~L~~~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 74 (286)
T 2zcu_A 11 LGHYVIESLMKTVPASQIVAIVRNPAKAQALAAQGITVRQADYGDEAALTSALQGVEKLLLISS 74 (286)
T ss_dssp HHHHHHHHHTTTSCGGGEEEEESCTTTCHHHHHTTCEEEECCTTCHHHHHHHTTTCSEEEECC-
T ss_pred HHHHHHHHHHhhCCCceEEEEEcChHhhhhhhcCCCeEEEcCCCCHHHHHHHHhCCCEEEEeCC
Confidence 799999999998 9999999999887766655443221 234566778898887765
|
| >1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A* | Back alignment and structure |
|---|
Probab=92.76 E-value=0.63 Score=38.20 Aligned_cols=89 Identities=17% Similarity=0.134 Sum_probs=52.6
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHHcCCcccCCHHHHhh-cCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAKEGANMALSLSTLAS-GAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~-~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||+.+++.+.+. +++|. ++|++ +++.++.. ++|+||=+.+ |..+.+.+. ..+..|
T Consensus 12 mG~~i~~~~~~~~~~elva~~d~~---------------~dl~~~~~~~~DvvIDfT~-p~a~~~~~~------~a~~~g 69 (245)
T 1p9l_A 12 VGTTMVRAVAAADDLTLSAELDAG---------------DPLSLLTDGNTEVVIDFTH-PDVVMGNLE------FLIDNG 69 (245)
T ss_dssp HHHHHHHHHHHCTTCEEEEEECTT---------------CCTHHHHHTTCCEEEECSC-TTTHHHHHH------HHHHTT
T ss_pred HHHHHHHHHHhCCCCEEEEEEccC---------------CCHHHHhccCCcEEEEccC-hHHHHHHHH------HHHHcC
Confidence 788899888765 88876 55764 34555554 7898886654 445555442 223456
Q ss_pred CEEEEcCCC-CchHHHHHHHHHHhc-CCceEeccCC
Q psy764 79 VIVIDSSTV-DPQVPQTLSNLAREK-QITFLDAPVS 112 (286)
Q Consensus 79 ~ivid~st~-~p~~~~~~~~~~~~~-g~~~~~~pv~ 112 (286)
.-+|-.||. +++...++.+...+. +..++-+|.+
T Consensus 70 ~~~VigTTG~~~e~~~~l~~aa~~~~~~~vv~a~N~ 105 (245)
T 1p9l_A 70 IHAVVGTTGFTAERFQQVESWLVAKPNTSVLIAPNF 105 (245)
T ss_dssp CEEEECCCCCCHHHHHHHHHHHHTSTTCEEEECSCC
T ss_pred CCEEEcCCCCCHHHHHHHHHHHHhCCCCCEEEECCc
Confidence 655555554 444445555554433 5555555554
|
| >2ehd_A Oxidoreductase, oxidoreductase, short-chain dehydrogenase/reducta; rossman fold, structural genomics, NPPSFA; 2.40A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.21 Score=40.27 Aligned_cols=72 Identities=18% Similarity=0.115 Sum_probs=45.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+.- .+..++-.=+.++++++.++.. +.....+=+++
T Consensus 17 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 82 (234)
T 2ehd_A 17 IGEATARLLHAKGYRVGLMARDEKRLQALAAEL-----------EGALPLPGDVREEGDWARAVAA---MEEAFGELSAL 82 (234)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----------TTCEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----------hhceEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999988776654321 1222333334556666666543 32222233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 83 i~~Ag~ 88 (234)
T 2ehd_A 83 VNNAGV 88 (234)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 776543
|
| >2nwq_A Probable short-chain dehydrogenase; oxidoreductase; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.31 Score=40.59 Aligned_cols=75 Identities=12% Similarity=0.029 Sum_probs=49.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+.- .+. .+...+..=+.++++++.++.. +.+...+=+++
T Consensus 33 IG~aia~~La~~G~~V~~~~r~~~~~~~~~~~~-------~~~-~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 101 (272)
T 2nwq_A 33 FGEACARRFAEAGWSLVLTGRREERLQALAGEL-------SAK-TRVLPLTLDVRDRAAMSAAVDN---LPEEFATLRGL 101 (272)
T ss_dssp SHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------TTT-SCEEEEECCTTCHHHHHHHHHT---CCGGGSSCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-------hcC-CcEEEEEcCCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 799999999999999999999988776654320 000 1222333345667778877764 43333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 102 vnnAG~ 107 (272)
T 2nwq_A 102 INNAGL 107 (272)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776654
|
| >1lu9_A Methylene tetrahydromethanopterin dehydrogenase; alpha/beta twisted open sheet structure, oxidoreductase; 1.90A {Methylobacterium extorquens} SCOP: c.2.1.7 c.58.1.4 PDB: 1lua_A* | Back alignment and structure |
|---|
Probab=92.75 E-value=0.099 Score=44.02 Aligned_cols=67 Identities=13% Similarity=0.190 Sum_probs=43.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++..|++.|++|++.+|++++.+.+.+. ..+. .++.++..-+.++++++.++.. =.++
T Consensus 131 iG~aia~~L~~~G~~V~i~~R~~~~~~~l~~~-------~~~~-~~~~~~~~D~~~~~~~~~~~~~----------~Dvl 192 (287)
T 1lu9_A 131 VGMRSAALLAGEGAEVVLCGRKLDKAQAAADS-------VNKR-FKVNVTAAETADDASRAEAVKG----------AHFV 192 (287)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHH-HTCCCEEEECCSHHHHHHHTTT----------CSEE
T ss_pred HHHHHHHHHHHCcCEEEEEECCHHHHHHHHHH-------HHhc-CCcEEEEecCCCHHHHHHHHHh----------CCEE
Confidence 68899999999999999999999887766432 0110 1234444445555555555432 1677
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|+++.
T Consensus 193 Vn~ag 197 (287)
T 1lu9_A 193 FTAGA 197 (287)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 77764
|
| >4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=92.72 E-value=0.19 Score=41.85 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=48.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++++.|++.|++|.+.+|+.++.+.+.+. + .+..++-.=+.++++++.++.. +.+...+=++
T Consensus 40 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~ 105 (272)
T 4dyv_A 40 VGRAVAVALAGAGYGVALAGRRLDALQETAAEIG-----------DDALCVPTDVTDPDSVRALFTA---TVEKFGRVDV 105 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHT-----------SCCEEEECCTTSHHHHHHHHHH---HHHHHSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhC-----------CCeEEEEecCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999999999998887766432 1 1233333345666677776653 3333334467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 106 lVnnAg~ 112 (272)
T 4dyv_A 106 LFNNAGT 112 (272)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776654
|
| >3l6e_A Oxidoreductase, short-chain dehydrogenase/reducta; structural genomics, PSI-2, protein structure initiative; 2.30A {Aeromonas hydrophila subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.71 E-value=0.14 Score=41.70 Aligned_cols=73 Identities=15% Similarity=0.092 Sum_probs=47.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|++++.+.+.+.- -.+...+..=+.++++++.++.. +.+...+=+++
T Consensus 15 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id~l 81 (235)
T 3l6e_A 15 LGRALTIGLVERGHQVSMMGRRYQRLQQQELLL----------GNAVIGIVADLAHHEDVDVAFAA---AVEWGGLPELV 81 (235)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------GGGEEEEECCTTSHHHHHHHHHH---HHHHHCSCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------cCCceEEECCCCCHHHHHHHHHH---HHHhcCCCcEE
Confidence 799999999999999999999998877664321 01223333335566677776653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 82 vnnAg~ 87 (235)
T 3l6e_A 82 LHCAGT 87 (235)
T ss_dssp EEECCC
T ss_pred EECCCC
Confidence 776654
|
| >3sju_A Keto reductase; short-chain dehydrogenase, oxidoreductase; HET: NDP; 2.40A {Streptomyces griseoruber} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.16 Score=42.52 Aligned_cols=76 Identities=13% Similarity=0.087 Sum_probs=47.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+.+.+. +.+.-.+...+-.=+.++++++.++.. +.+...+=+++
T Consensus 36 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~id~l 105 (279)
T 3sju_A 36 IGLAVARTLAARGIAVYGCARDAKNVSAAVDG-------LRAAGHDVDGSSCDVTSTDEVHAAVAA---AVERFGPIGIL 105 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHTTTCCEEEEECCTTCHHHHHHHHHH---HHHHHCSCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEECCCCCHHHHHHHHHH---HHHHcCCCcEE
Confidence 79999999999999999999998877665432 000001122233335566677766653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 106 v~nAg~ 111 (279)
T 3sju_A 106 VNSAGR 111 (279)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776554
|
| >3gaf_A 7-alpha-hydroxysteroid dehydrogenase; seattle structural genomics center for infectious disease, ssgcid, oxidoreductase, structural genomics; 2.20A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=92.62 E-value=0.14 Score=42.13 Aligned_cols=76 Identities=12% Similarity=0.083 Sum_probs=46.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|+++|++|.+.+|++++.+.+.+. ..+.-.+...+-.=+.++++++.++.. +.+...+=+++
T Consensus 24 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~id~l 93 (256)
T 3gaf_A 24 IGRAIAGTFAKAGASVVVTDLKSEGAEAVAAA-------IRQAGGKAIGLECNVTDEQHREAVIKA---ALDQFGKITVL 93 (256)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEECCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998877665432 011001122233335566667766653 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 94 v~nAg~ 99 (256)
T 3gaf_A 94 VNNAGG 99 (256)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776544
|
| >3rkr_A Short chain oxidoreductase; rossmann fold; HET: NAP; 2.42A {Uncultured bacterium BIO5} | Back alignment and structure |
|---|
Probab=92.60 E-value=0.17 Score=41.76 Aligned_cols=76 Identities=16% Similarity=0.181 Sum_probs=48.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. +.+.-....++..=+.++.+++.++.. +.+...+=+++
T Consensus 41 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id~l 110 (262)
T 3rkr_A 41 IGAAIARKLGSLGARVVLTARDVEKLRAVERE-------IVAAGGEAESHACDLSHSDAIAAFATG---VLAAHGRCDVL 110 (262)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCEEEEEECCTTCHHHHHHHHHH---HHHHHSCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHhCCceeEEEecCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 79999999999999999999999887665432 011111223333345566667776653 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 111 v~~Ag~ 116 (262)
T 3rkr_A 111 VNNAGV 116 (262)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 777654
|
| >2gas_A Isoflavone reductase; NADPH-dependent reductase, oxidoreductase; 1.60A {Medicago sativa} | Back alignment and structure |
|---|
Probab=92.51 E-value=0.13 Score=43.22 Aligned_cols=56 Identities=11% Similarity=0.102 Sum_probs=41.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc-------hHHHHH---HHcCCccc-------CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT-------DASQTL---AKEGANMA-------LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~-------~~~~~l---~~~g~~~~-------~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|++.||+|++.+|++ ++.+.+ ...|+... +++.++++++|+||.+.+.
T Consensus 14 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~~a~~ 86 (307)
T 2gas_A 14 IGRHIVWASIKAGNPTYALVRKTITAANPETKEELIDNYQSLGVILLEGDINDHETLVKAIKQVDIVICAAGR 86 (307)
T ss_dssp THHHHHHHHHHHTCCEEEEECCSCCSSCHHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECSSS
T ss_pred HHHHHHHHHHhCCCcEEEEECCCcccCChHHHHHHHHHHHhCCCEEEEeCCCCHHHHHHHHhCCCEEEECCcc
Confidence 79999999999999999999987 555433 33454321 2355677899999998864
|
| >3dhn_A NAD-dependent epimerase/dehydratase; reductase, PF01370, Q89Z24_bactn, NESG, BTR310, structural genomics, PSI-2; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.49 E-value=0.041 Score=44.24 Aligned_cols=54 Identities=15% Similarity=0.147 Sum_probs=36.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC-------cccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA-------NMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~-------~~~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|++.|++|++.+|++++.+.+. .++ .-.+++.++++++|+||.+..
T Consensus 16 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~-~~~~~~~~Dl~d~~~~~~~~~~~d~vi~~a~ 76 (227)
T 3dhn_A 16 VGSALLNEALNRGFEVTAVVRHPEKIKIEN-EHLKVKKADVSSLDEVCEVCKGADAVISAFN 76 (227)
T ss_dssp HHHHHHHHHHTTTCEEEEECSCGGGCCCCC-TTEEEECCCTTCHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEEEcCcccchhcc-CceEEEEecCCCHHHHHHHhcCCCEEEEeCc
Confidence 689999999999999999999987653321 111 111223455566777766654
|
| >1hdc_A 3-alpha, 20 beta-hydroxysteroid dehydrogenase; oxidoreductase; HET: CBO; 2.20A {Streptomyces exfoliatus} SCOP: c.2.1.2 PDB: 2hsd_A* | Back alignment and structure |
|---|
Probab=92.47 E-value=0.23 Score=40.78 Aligned_cols=73 Identities=10% Similarity=0.020 Sum_probs=46.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. . -.+..++..=+.++++++.++.. +.+...+=+++
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~---------~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~iD~l 83 (254)
T 1hdc_A 17 LGAEAARQAVAAGARVVLADVLDEEGAATARE-L---------GDAARYQHLDVTIEEDWQRVVAY---AREEFGSVDGL 83 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-T---------GGGEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-h---------CCceeEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998877665432 1 01122233334556666666553 33323233677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 84 v~nAg~ 89 (254)
T 1hdc_A 84 VNNAGI 89 (254)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776554
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=92.44 E-value=0.099 Score=43.55 Aligned_cols=54 Identities=19% Similarity=0.175 Sum_probs=42.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc----CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA----LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~----~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|.++||+|++.+|++++.+.+...++... .+++ ++++|+||-+...
T Consensus 16 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~D~~d~~--~~~~d~vi~~a~~ 73 (286)
T 3ius_A 16 TARVLSRALAPQGWRIIGTSRNPDQMEAIRASGAEPLLWPGEEPS--LDGVTHLLISTAP 73 (286)
T ss_dssp HHHHHHHHHGGGTCEEEEEESCGGGHHHHHHTTEEEEESSSSCCC--CTTCCEEEECCCC
T ss_pred HHHHHHHHHHHCCCEEEEEEcChhhhhhHhhCCCeEEEecccccc--cCCCCEEEECCCc
Confidence 6999999999999999999999998887776654322 1222 6789999998853
|
| >4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A | Back alignment and structure |
|---|
Probab=92.42 E-value=0.21 Score=41.20 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|+++|.+|.+.+|+++..+++.+.- ++.- .++..+-.=|.++++++.++.. +.+...+=++
T Consensus 20 IG~aiA~~la~~Ga~Vvi~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~G~iD~ 89 (256)
T 4fs3_A 20 IAFGVAKVLDQLGAKLVFTYRKERSRKELEKLL-------EQLNQPEAHLYQIDVQSDEEVINGFEQ---IGKDVGNIDG 89 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHH-------GGGTCSSCEEEECCTTCHHHHHHHHHH---HHHHHCCCSE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-------HhcCCCcEEEEEccCCCHHHHHHHHHH---HHHHhCCCCE
Confidence 789999999999999999999988776654320 0000 0122222235677777776653 3333333456
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
+|+...
T Consensus 90 lvnnAg 95 (256)
T 4fs3_A 90 VYHSIA 95 (256)
T ss_dssp EEECCC
T ss_pred EEeccc
Confidence 666544
|
| >3g79_A NDP-N-acetyl-D-galactosaminuronic acid dehydrogen; structural genomics, protein structure initiative; 2.40A {Methanosarcina mazei GO1} | Back alignment and structure |
|---|
Probab=92.42 E-value=0.15 Score=46.33 Aligned_cols=91 Identities=16% Similarity=0.097 Sum_probs=61.9
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC-CCCEEE
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK-PGVIVI 82 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~-~g~ivi 82 (286)
..++..|.+.|.+|.+||...... .....+.++.++++++|+|++++.++ +.+.+-. +.+.+.++ +..+|+
T Consensus 376 ~~i~~~L~~~g~~V~~~DP~~~~~-----~~~~~~~~~~~~~~~ad~vvi~t~~~-~f~~~d~--~~~~~~~~~~~~~i~ 447 (478)
T 3g79_A 376 EPYRDLCLKAGASVMVHDPYVVNY-----PGVEISDNLEEVVRNADAIVVLAGHS-AYSSLKA--DWAKKVSAKANPVII 447 (478)
T ss_dssp HHHHHHHHHHTCEEEEECSSCCCB-----TTBCEESCHHHHHTTCSEEEECSCCH-HHHSCCH--HHHHHHHCCSSCEEE
T ss_pred HHHHHHHHHCCCEEEEECCCcccc-----cCcceecCHHHHHhcCCEEEEecCCH-HHHhhhH--HHHHHHhccCCCEEE
Confidence 357788999999999999765421 12445678999999999999999985 4443211 11333333 378999
Q ss_pred EcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 83 DSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 83 d~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
|.-.+... +.+.+.|+.|..
T Consensus 448 D~rn~~~~------~~~~~~g~~y~~ 467 (478)
T 3g79_A 448 DGRNVIEP------DEFIGKGFVYKG 467 (478)
T ss_dssp ESSSCSCH------HHHHTTTCEEEE
T ss_pred ECCCCCCH------HHHHhcCCEEEE
Confidence 98777643 234567887775
|
| >3gvc_A Oxidoreductase, probable short-chain type dehydrogenase/reductase; ssgcid, decode, niaid, UWPPG, SBRI, structural genomics; 2.45A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=92.41 E-value=0.15 Score=42.56 Aligned_cols=73 Identities=18% Similarity=0.146 Sum_probs=47.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+.+.+. .-.+...+-.=+.++++++.++.. +.+...+=+++
T Consensus 41 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 107 (277)
T 3gvc_A 41 IGLAVARRLADEGCHVLCADIDGDAADAAATK----------IGCGAAACRVDVSDEQQIIAMVDA---CVAAFGGVDKL 107 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HCSSCEEEECCTTCHHHHHHHHHH---HHHHHSSCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------cCCcceEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998887766432 001222333345666667666653 33333334567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 108 vnnAg~ 113 (277)
T 3gvc_A 108 VANAGV 113 (277)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776554
|
| >2a4k_A 3-oxoacyl-[acyl carrier protein] reductase; reductase,hyperthermophIle, structural genomics, PSI, protei structure initiative; 2.30A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.38 E-value=0.16 Score=42.00 Aligned_cols=73 Identities=12% Similarity=0.094 Sum_probs=46.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. .. .+...+..=+.++++++.++.. +.+...+=+++
T Consensus 18 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~---------~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~iD~l 84 (263)
T 2a4k_A 18 IGRAALDLFAREGASLVAVDREERLLAEAVAA-LE---------AEAIAVVADVSDPKAVEAVFAE---ALEEFGRLHGV 84 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHT-CC---------SSEEEEECCTTSHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-hc---------CceEEEEcCCCCHHHHHHHHHH---HHHHcCCCcEE
Confidence 79999999999999999999998887766442 11 1222233334566666666653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 85 vnnAg~ 90 (263)
T 2a4k_A 85 AHFAGV 90 (263)
T ss_dssp EEGGGG
T ss_pred EECCCC
Confidence 776543
|
| >4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A | Back alignment and structure |
|---|
Probab=92.37 E-value=0.12 Score=42.49 Aligned_cols=73 Identities=10% Similarity=0.001 Sum_probs=46.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+++.+.- -.+...+-.=+.++.+++.++.. +.+...+=+++
T Consensus 20 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id~l 86 (255)
T 4eso_A 20 MGLATVRRLVEGGAEVLLTGRNESNIARIREEF----------GPRVHALRSDIADLNEIAVLGAA---AGQTLGAIDLL 86 (255)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------GGGEEEEECCTTCHHHHHHHHHH---HHHHHSSEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh----------CCcceEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 799999999999999999999998877665420 01222333335566666666653 33323233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+....
T Consensus 87 v~nAg~ 92 (255)
T 4eso_A 87 HINAGV 92 (255)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 766544
|
| >1qyc_A Phenylcoumaran benzylic ether reductase PT1; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.20A {Pinus taeda} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.34 E-value=0.17 Score=42.61 Aligned_cols=56 Identities=21% Similarity=0.244 Sum_probs=40.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc------hHHHHH---HHcCCccc-------CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT------DASQTL---AKEGANMA-------LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~------~~~~~l---~~~g~~~~-------~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|++.|++|++.+|++ ++.+.+ ...|+... +++.++++++|+||.+.+.
T Consensus 16 iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~~~l~~~~v~~v~~D~~d~~~l~~~~~~~d~vi~~a~~ 87 (308)
T 1qyc_A 16 IGRHVAKASLDLGHPTFLLVRESTASSNSEKAQLLESFKASGANIVHGSIDDHASLVEAVKNVDVVISTVGS 87 (308)
T ss_dssp THHHHHHHHHHTTCCEEEECCCCCTTTTHHHHHHHHHHHTTTCEEECCCTTCHHHHHHHHHTCSEEEECCCG
T ss_pred HHHHHHHHHHhCCCCEEEEECCcccccCHHHHHHHHHHHhCCCEEEEeccCCHHHHHHHHcCCCEEEECCcc
Confidence 79999999999999999999974 333322 23354321 2355677899999998874
|
| >3grp_A 3-oxoacyl-(acyl carrierprotein) reductase; structural genomics, oxidoreductase, S structural genomics center for infectious disease, ssgcid; 2.09A {Bartonella henselae} PDB: 3enn_A 3emk_A | Back alignment and structure |
|---|
Probab=92.30 E-value=0.2 Score=41.51 Aligned_cols=74 Identities=12% Similarity=0.094 Sum_probs=47.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|++|.+.+|++++.+.+.+. .-.++.++-.=+.++++++.++.. +.+...+=+++
T Consensus 39 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 105 (266)
T 3grp_A 39 IGEAIARCFHAQGAIVGLHGTREDKLKEIAAD----------LGKDVFVFSANLSDRKSIKQLAEV---AEREMEGIDIL 105 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HCSSEEEEECCTTSHHHHHHHHHH---HHHHHTSCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hCCceEEEEeecCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998887766432 101122222335566677776653 33333334677
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|++....
T Consensus 106 vnnAg~~ 112 (266)
T 3grp_A 106 VNNAGIT 112 (266)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 7776543
|
| >3lk7_A UDP-N-acetylmuramoylalanine--D-glutamate ligase; agalacitae, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: MSE; 1.50A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=92.28 E-value=0.34 Score=43.57 Aligned_cols=103 Identities=14% Similarity=0.062 Sum_probs=59.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc----hHHHHHHHcCCcccC--CHHHHhhc-CcEEEEecCChh---HHHHHhcC----
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT----DASQTLAKEGANMAL--SLSTLASG-AEFIISMLPASQ---DVLDAYDG---- 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~----~~~~~l~~~g~~~~~--s~~e~~~~-adivi~~v~~~~---~~~~v~~~---- 67 (286)
.|.+.|+.|.+.|++|+++|+++ ...+.+.+.|+.+.. .+.+...+ +|+||++..-+. .+......
T Consensus 20 sG~s~A~~l~~~G~~V~~~D~~~~~~~~~~~~L~~~gi~~~~g~~~~~~~~~~~d~vv~spgi~~~~p~~~~a~~~gi~v 99 (451)
T 3lk7_A 20 SGEAAARLLAKLGAIVTVNDGKPFDENPTAQSLLEEGIKVVCGSHPLELLDEDFCYMIKNPGIPYNNPMVKKALEKQIPV 99 (451)
T ss_dssp THHHHHHHHHHTTCEEEEEESSCGGGCHHHHHHHHTTCEEEESCCCGGGGGSCEEEEEECTTSCTTSHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHhCCCEEEEEeCCcccCChHHHHHHhCCCEEEECCChHHhhcCCCCEEEECCcCCCCChhHHHHHHCCCcE
Confidence 47788999999999999999864 345677777876642 34455566 899998643221 22221111
Q ss_pred --CccccccCCCCCEEEEcCCCCchHHHH-HHHHHHhcCC
Q psy764 68 --SDGILKHAKPGVIVIDSSTVDPQVPQT-LSNLAREKQI 104 (286)
Q Consensus 68 --~~~l~~~l~~g~ivid~st~~p~~~~~-~~~~~~~~g~ 104 (286)
.-.++..+.+.++|--+.|..-.++.. +...+...|.
T Consensus 100 ~~~~e~~~~~~~~~~IaVTGTnGKTTTt~ml~~iL~~~g~ 139 (451)
T 3lk7_A 100 LTEVELAYLVSESQLIGITGSNGKTTTTTMIAEVLNAGGQ 139 (451)
T ss_dssp ECHHHHHHHHCCSEEEEEECSSCHHHHHHHHHHHHHHTTC
T ss_pred EeHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHHhcCC
Confidence 000111223445555555544444444 4555666664
|
| >1qyd_A Pinoresinol-lariciresinol reductase; NADPH-dependent aromatic alcohol reductases, pcber, PLR, IFR, lignans, isoflavonoids, plant protein; 2.50A {Thuja plicata} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.17 Score=42.65 Aligned_cols=56 Identities=23% Similarity=0.199 Sum_probs=40.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC-----chHHHHH---HHcCCccc-------CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN-----TDASQTL---AKEGANMA-------LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~-----~~~~~~l---~~~g~~~~-------~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|++.|++|++.+|+ +++.+.+ ...|+... +++.++++++|+||.+...
T Consensus 16 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~~ 86 (313)
T 1qyd_A 16 IGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISALAG 86 (313)
T ss_dssp THHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCcEEEEECCCcccchhHHHHHHHHHhCCeEEEeCCCCCHHHHHHHHhCCCEEEECCcc
Confidence 7999999999999999999998 4454433 23344321 2356677899999998764
|
| >2y0c_A BCEC, UDP-glucose dehydrogenase; oxidoreductase, carbohydrate synthesis, exopolysaccharide, C fibrosis; HET: UGA; 1.75A {Burkholderia cepacia} PDB: 2y0d_A* 2y0e_A* | Back alignment and structure |
|---|
Probab=92.23 E-value=0.74 Score=41.75 Aligned_cols=95 Identities=11% Similarity=0.053 Sum_probs=61.8
Q ss_pred HHHHHHHHhCCCcEEEEcCCchH-HHHHHH----------cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDA-SQTLAK----------EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~----------~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
..+++.|.+.|.+|.+||..... ....-. ..+..++++.++++++|+|++++.+++ .+.+-. +.+.
T Consensus 351 ~~i~~~L~~~g~~v~~~DP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~~vi~t~~~~-f~~~~~--~~~~ 427 (478)
T 2y0c_A 351 RELIAELLSRGARIAAYDPVAQEEARRVIALDLADHPSWLERLSFVDDEAQAARDADALVIVTEWKI-FKSPDF--VALG 427 (478)
T ss_dssp HHHHHHHHHTTCEEEEECTTTHHHHHHHHHHHTTTCHHHHTTEEECSSHHHHTTTCSEEEECSCCGG-GGSCCH--HHHH
T ss_pred HHHHHHHHHCCCEEEEECCCccHHHHHhhccccccccccccceeecCCHHHHHhCCCEEEEecCChH-hhccCH--HHHH
Confidence 35788999999999999986432 111111 135667889999999999999999863 332110 0122
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
..+ ...+|+|.-.+.... .+.+.|+.|..
T Consensus 428 ~~~-~~~~i~D~r~~~~~~------~~~~~g~~y~~ 456 (478)
T 2y0c_A 428 RLW-KTPVIFDGRNLYEPE------TMSEQGIEYHP 456 (478)
T ss_dssp TTC-SSCEEEESSCCSCHH------HHHHTTCEEEC
T ss_pred hhc-CCCEEEECCCCCCHH------HHHhcCCEEEE
Confidence 222 358999998876432 34566777765
|
| >3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=92.20 E-value=0.18 Score=41.36 Aligned_cols=75 Identities=13% Similarity=0.037 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|++|.+.+|++++.+.+.+. +.+.-.+..++..=+.++++++.++.. +.+. .+=+++
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~-g~id~l 87 (252)
T 3h7a_A 19 IGAEIAKKFAAEGFTVFAGRRNGEKLAPLVAE-------IEAAGGRIVARSLDARNEDEVTAFLNA---ADAH-APLEVT 87 (252)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHH-------HHHTTCEEEEEECCTTCHHHHHHHHHH---HHHH-SCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCeEEEEECcCCCHHHHHHHHHH---HHhh-CCceEE
Confidence 79999999999999999999999887665432 011001222233335566677776653 3332 223567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+...+
T Consensus 88 v~nAg~ 93 (252)
T 3h7a_A 88 IFNVGA 93 (252)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 766554
|
| >3zv4_A CIS-2,3-dihydrobiphenyl-2,3-DIOL dehydrogenase; oxidoreductase, short chain dehydrogenase/oxidoreductase, SD comamonas testosteroni; 1.80A {Pandoraea pnomenusa} SCOP: c.2.1.2 PDB: 2y99_A* 3zv3_A 2y93_A 3zv5_A* 3zv6_A* 1bdb_A* | Back alignment and structure |
|---|
Probab=92.18 E-value=0.18 Score=42.12 Aligned_cols=73 Identities=16% Similarity=0.099 Sum_probs=47.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+.+.+.- -.+...+..=+.++.+++.++.. +.+...+=+++
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iD~l 83 (281)
T 3zv4_A 17 LGRALVDRFVAEGARVAVLDKSAERLRELEVAH----------GGNAVGVVGDVRSLQDQKRAAER---CLAAFGKIDTL 83 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------BTTEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHc----------CCcEEEEEcCCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 799999999999999999999998877765431 01222333334566666666653 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++..+
T Consensus 84 vnnAg~ 89 (281)
T 3zv4_A 84 IPNAGI 89 (281)
T ss_dssp ECCCCC
T ss_pred EECCCc
Confidence 776554
|
| >4dry_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.50A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.16 E-value=0.32 Score=40.68 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=47.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcC-cEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGA-EFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~a-divi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|++.|++|.+.+|++++.+.+.+. ..+.-... ..+-.=+.++++++.++.. +.+...+=++
T Consensus 45 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~ 114 (281)
T 4dry_A 45 VGRGIAQALSAEGYSVVITGRRPDVLDAAAGE-------IGGRTGNIVRAVVCDVGDPDQVAALFAA---VRAEFARLDL 114 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHHSSCEEEEECCTTCHHHHHHHHHH---HHHHHSCCSE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCeEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999999999998877665432 11111111 2233335566677776653 3333334467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 115 lvnnAG~ 121 (281)
T 4dry_A 115 LVNNAGS 121 (281)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7777654
|
| >2jah_A Clavulanic acid dehydrogenase; short-chain dehydrogenase/reductase, lactamase inhibitor, AN biosynthesis, NADPH, oxidoreductase; HET: MSE NDP; 1.80A {Streptomyces clavuligerus} PDB: 2jap_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.24 Score=40.43 Aligned_cols=76 Identities=14% Similarity=0.150 Sum_probs=45.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|+++|++|.+.+|++++.+.+.+. +.+.-.+...+-.=+.++++++.++.. +.+...+=+++
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dv~~~~~~~~~~~~---~~~~~g~id~l 88 (247)
T 2jah_A 19 IGEATARALAAEGAAVAIAARRVEKLRALGDE-------LTAAGAKVHVLELDVADRQGVDAAVAS---TVEALGGLDIL 88 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHHSCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEECCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998876655431 010001122222234566666666653 33323333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 89 v~nAg~ 94 (247)
T 2jah_A 89 VNNAGI 94 (247)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776543
|
| >3rwb_A TPLDH, pyridoxal 4-dehydrogenase; short chain dehydrogenase/reductase, 4-pyridoxola NAD+, oxidoreductase; HET: NAD 4PL; 1.70A {Mesorhizobium loti} PDB: 3ndr_A* 3nug_A* | Back alignment and structure |
|---|
Probab=92.12 E-value=0.12 Score=42.31 Aligned_cols=72 Identities=21% Similarity=0.223 Sum_probs=46.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++++.|+++|++|.+.+|++++.+.+.+. +. +...+-.=+.++++++.++.. +.+...+=++
T Consensus 18 IG~a~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id~ 83 (247)
T 3rwb_A 18 IGKAIAARLAADGATVIVSDINAEGAKAAAASIGK-----------KARAIAADISDPGSVKALFAE---IQALTGGIDI 83 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCT-----------TEEECCCCTTCHHHHHHHHHH---HHHHHSCCSE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhCC-----------ceEEEEcCCCCHHHHHHHHHH---HHHHCCCCCE
Confidence 79999999999999999999999887766432 21 111122224566666666653 3333333467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 84 lv~nAg~ 90 (247)
T 3rwb_A 84 LVNNASI 90 (247)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776654
|
| >2csu_A 457AA long hypothetical protein; structural genomics, PH0766, riken ST genomics/proteomics initiative, RSGI, NPPSFA; 2.20A {Pyrococcus horikoshii} SCOP: c.2.1.8 c.23.4.1 c.23.4.1 | Back alignment and structure |
|---|
Probab=92.11 E-value=0.23 Score=44.88 Aligned_cols=95 Identities=12% Similarity=0.051 Sum_probs=62.6
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+|..+.++|.+.| +.|+..|...+.+ .|..++.|+.|+.+..|++++++|. +.+.+++.+ ..+. .- +.
T Consensus 23 ~g~~v~~~l~~~g~~~v~pVnP~~~~i-----~G~~~y~sl~~lp~~~Dlavi~vp~-~~~~~~v~e---~~~~-Gi-~~ 91 (457)
T 2csu_A 23 LGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVPK-RFVKDTLIQ---CGEK-GV-KG 91 (457)
T ss_dssp HHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSCH-HHHHHHHHH---HHHH-TC-CE
T ss_pred hHHHHHHHHHHcCCCEEEEECCCCCeE-----CCEeccCCHHHcCCCCCEEEEecCH-HHHHHHHHH---HHHc-CC-CE
Confidence 4778889998885 6677777653322 4888999999998899999999995 566666543 2221 12 33
Q ss_pred EEEcCCCCch-------HHHHHHHHHHhcCCceE
Q psy764 81 VIDSSTVDPQ-------VPQTLSNLAREKQITFL 107 (286)
Q Consensus 81 vid~st~~p~-------~~~~~~~~~~~~g~~~~ 107 (286)
++..+...++ ..+++.+.++++|++++
T Consensus 92 vv~~s~G~~e~g~~g~~~~~~l~~~a~~~g~~vi 125 (457)
T 2csu_A 92 VVIITAGFGETGEEGKREEKELVEIAHKYGMRII 125 (457)
T ss_dssp EEECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred EEEecCCCCccccccHHHHHHHHHHHHHcCCEEE
Confidence 3434433332 14566777777787766
|
| >3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A* | Back alignment and structure |
|---|
Probab=92.11 E-value=0.29 Score=40.80 Aligned_cols=73 Identities=14% Similarity=0.043 Sum_probs=48.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc--hHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT--DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~--~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|++.|++|.+.+|+. +..+.+.+.+ ....++..=+.++++++.++.. +.+...+=+
T Consensus 40 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~~-----------~~~~~~~~Dl~~~~~v~~~~~~---~~~~~g~id 105 (280)
T 3nrc_A 40 IAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAEF-----------NPAAVLPCDVISDQEIKDLFVE---LGKVWDGLD 105 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGGG-----------CCSEEEECCTTCHHHHHHHHHH---HHHHCSSCC
T ss_pred HHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHhc-----------CCceEEEeecCCHHHHHHHHHH---HHHHcCCCC
Confidence 79999999999999999999987 5555554332 1223344445667777777764 444344446
Q ss_pred EEEEcCCCC
Q psy764 80 IVIDSSTVD 88 (286)
Q Consensus 80 ivid~st~~ 88 (286)
++|++....
T Consensus 106 ~li~nAg~~ 114 (280)
T 3nrc_A 106 AIVHSIAFA 114 (280)
T ss_dssp EEEECCCCC
T ss_pred EEEECCccC
Confidence 788876654
|
| >3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=92.10 E-value=0.27 Score=39.99 Aligned_cols=76 Identities=8% Similarity=0.083 Sum_probs=46.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEec--CChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISML--PASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v--~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. +.+.- ....++..-+ .+.++++.++.. +.+...+=
T Consensus 26 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~d~d~~~~~~~~~~~~~---~~~~~g~i 95 (247)
T 3i1j_A 26 IGAAAARAYAAHGASVVLLGRTEASLAEVSDQ-------IKSAGQPQPLIIALNLENATAQQYRELAAR---VEHEFGRL 95 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTSCCCEEEECCTTTCCHHHHHHHHHH---HHHHHSCC
T ss_pred HHHHHHHHHHHCCCEEEEEecCHHHHHHHHHH-------HHhcCCCCceEEEeccccCCHHHHHHHHHH---HHHhCCCC
Confidence 79999999999999999999998887665432 00000 1222333333 555666666553 33333344
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
+++|++...
T Consensus 96 d~lv~nAg~ 104 (247)
T 3i1j_A 96 DGLLHNASI 104 (247)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCcc
Confidence 677776654
|
| >4ibo_A Gluconate dehydrogenase; enzyme function initiative structural genomics, oxidoreductase; 2.10A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=92.10 E-value=0.18 Score=42.02 Aligned_cols=76 Identities=9% Similarity=0.201 Sum_probs=46.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|++|.+.+|++++.+++.+. +.+.-.+...+..=+.++++++.++.. +.+...+=+++
T Consensus 38 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 107 (271)
T 4ibo_A 38 LGRAMAEGLAVAGARILINGTDPSRVAQTVQE-------FRNVGHDAEAVAFDVTSESEIIEAFAR---LDEQGIDVDIL 107 (271)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHH-------HHHTTCCEEECCCCTTCHHHHHHHHHH---HHHHTCCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCceEEEEcCCCCHHHHHHHHHH---HHHHCCCCCEE
Confidence 79999999999999999999998877665432 000001111222224556666666653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++..+
T Consensus 108 v~nAg~ 113 (271)
T 4ibo_A 108 VNNAGI 113 (271)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776554
|
| >3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=92.08 E-value=0.16 Score=41.76 Aligned_cols=74 Identities=15% Similarity=0.092 Sum_probs=42.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. .-.+..++-.=+.++++++.++.. +.+...+=+++
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id~l 85 (257)
T 3tpc_A 19 LGAAVTRMLAQEGATVLGLDLKPPAGEEPAAE----------LGAAVRFRNADVTNEADATAALAF---AKQEFGHVHGL 85 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCC----------------------CEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH----------hCCceEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998876554322 011233333445666677776653 33333334677
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|++....
T Consensus 86 v~nAg~~ 92 (257)
T 3tpc_A 86 VNCAGTA 92 (257)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 7765543
|
| >3m1a_A Putative dehydrogenase; short, PSI, MCSG, structural genomics, midwest center for structural genomics, protein structure initiative; 2.00A {Streptomyces avermitilis} | Back alignment and structure |
|---|
Probab=92.05 E-value=0.18 Score=42.04 Aligned_cols=73 Identities=14% Similarity=0.035 Sum_probs=47.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|++++.+.+.+.- -.+..++..=+.++.+++.++.. +.+...+=+++
T Consensus 17 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~~~~~~~~---~~~~~g~id~l 83 (281)
T 3m1a_A 17 FGRAIAEAAVAAGDTVIGTARRTEALDDLVAAY----------PDRAEAISLDVTDGERIDVVAAD---VLARYGRVDVL 83 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHC----------TTTEEEEECCTTCHHHHHHHHHH---HHHHHSCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc----------cCCceEEEeeCCCHHHHHHHHHH---HHHhCCCCCEE
Confidence 799999999999999999999998877665421 01223333445666667666653 33323333567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 84 v~~Ag~ 89 (281)
T 3m1a_A 84 VNNAGR 89 (281)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 776543
|
| >2x4g_A Nucleoside-diphosphate-sugar epimerase; isomerase; 2.65A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.065 Score=45.89 Aligned_cols=55 Identities=16% Similarity=0.169 Sum_probs=39.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-------cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-------ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|++.|++|++.+|++++.+.+.+.++.. .+++.++++++|+||-+..
T Consensus 25 iG~~l~~~L~~~g~~V~~~~r~~~~~~~l~~~~~~~~~~Dl~d~~~~~~~~~~~d~vih~a~ 86 (342)
T 2x4g_A 25 LGHHAARAIRAAGHDLVLIHRPSSQIQRLAYLEPECRVAEMLDHAGLERALRGLDGVIFSAG 86 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCGGGGGGGCCEEEECCTTCHHHHHHHTTTCSEEEEC--
T ss_pred HHHHHHHHHHHCCCEEEEEecChHhhhhhccCCeEEEEecCCCHHHHHHHHcCCCEEEECCc
Confidence 799999999999999999999987665544334321 1234566788999998865
|
| >1geg_A Acetoin reductase; SDR family, oxidoreductase; HET: GLC NAD; 1.70A {Klebsiella pneumoniae} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.99 E-value=0.29 Score=40.13 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=45.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. +.+.-.+..++..=+.++++++.++.. +.+...+=+++
T Consensus 14 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id~l 83 (256)
T 1geg_A 14 IGKAIALRLVKDGFAVAIADYNDATAKAVASE-------INQAGGHAVAVKVDVSDRDQVFAAVEQ---ARKTLGGFDVI 83 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTSHHHHHHHHHH---HHHHTTCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEecCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 79999999999999999999998876655321 000001112222234556666666653 33333333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+....
T Consensus 84 v~nAg~ 89 (256)
T 1geg_A 84 VNNAGV 89 (256)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776543
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=91.95 E-value=0.034 Score=44.56 Aligned_cols=27 Identities=7% Similarity=0.016 Sum_probs=24.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ 28 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~ 28 (286)
+|..+++.|+++|++|++.+|++++.+
T Consensus 12 iG~~l~~~L~~~g~~V~~~~R~~~~~~ 38 (219)
T 3dqp_A 12 VGKSLLKSLSTTDYQIYAGARKVEQVP 38 (219)
T ss_dssp HHHHHHHHHTTSSCEEEEEESSGGGSC
T ss_pred HHHHHHHHHHHCCCEEEEEECCccchh
Confidence 799999999999999999999987643
|
| >1yde_A Retinal dehydrogenase/reductase 3; oxidoreductase, structural genomics, structural genomics CON SGC; 2.40A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.93 E-value=0.25 Score=40.96 Aligned_cols=72 Identities=19% Similarity=0.234 Sum_probs=45.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.- .+...+..=+.++.+++.++.. +.+...+=+++
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 86 (270)
T 1yde_A 21 IGAGIVRAFVNSGARVVICDKDESGGRALEQEL-----------PGAVFILCDVTQEDDVKTLVSE---TIRRFGRLDCV 86 (270)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-----------TTEEEEECCTTSHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----------cCCeEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999988776664421 1122233334556666666553 33323333567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 87 v~nAg~ 92 (270)
T 1yde_A 87 VNNAGH 92 (270)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776543
|
| >3c1o_A Eugenol synthase; phenylpropene, PIP reductase, short-chain dehydrogenase/reductase, oxidoreductase; HET: NAP; 1.80A {Clarkia breweri} | Back alignment and structure |
|---|
Probab=91.92 E-value=0.22 Score=42.17 Aligned_cols=56 Identities=16% Similarity=0.230 Sum_probs=41.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc------hHHHHH---HHcCCccc-------CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT------DASQTL---AKEGANMA-------LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~------~~~~~l---~~~g~~~~-------~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|++.|++|++.+|++ ++.+.+ ...++... +++.++++++|+||.+...
T Consensus 16 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~l~~~~~~~v~~v~~D~~d~~~l~~a~~~~d~vi~~a~~ 87 (321)
T 3c1o_A 16 IGKFMVRASLSFSHPTFIYARPLTPDSTPSSVQLREEFRSMGVTIIEGEMEEHEKMVSVLKQVDIVISALPF 87 (321)
T ss_dssp THHHHHHHHHHTTCCEEEEECCCCTTCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCCG
T ss_pred hHHHHHHHHHhCCCcEEEEECCcccccChHHHHHHHHhhcCCcEEEEecCCCHHHHHHHHcCCCEEEECCCc
Confidence 79999999999999999999986 343333 33454321 2456778899999998764
|
| >3pk0_A Short-chain dehydrogenase/reductase SDR; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.75A {Mycobacterium smegmatis} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.85 E-value=0.19 Score=41.52 Aligned_cols=76 Identities=12% Similarity=0.022 Sum_probs=46.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|+++|++|.+.+|++++.+.+.+. +.+.- .+...+-.=+.++.+++.++.. +.+...+=++
T Consensus 22 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id~ 91 (262)
T 3pk0_A 22 IGRGIATVFARAGANVAVAGRSTADIDACVAD-------LDQLGSGKVIGVQTDVSDRAQCDALAGR---AVEEFGGIDV 91 (262)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHTTSSSCEEEEECCTTSHHHHHHHHHH---HHHHHSCCSE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhhCCCcEEEEEcCCCCHHHHHHHHHH---HHHHhCCCCE
Confidence 79999999999999999999999887665432 00000 1112222234566666666653 3333333467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 92 lvnnAg~ 98 (262)
T 3pk0_A 92 VCANAGV 98 (262)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776554
|
| >3l77_A Short-chain alcohol dehydrogenase; oxidoreductase; HET: NJP PG4; 1.60A {Thermococcus sibiricus} SCOP: c.2.1.0 PDB: 3tn7_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=0.28 Score=39.53 Aligned_cols=75 Identities=16% Similarity=0.166 Sum_probs=47.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. ..+. ...++.++ =+.++++++.++.. +.+...+=+
T Consensus 14 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~-~~~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id 82 (235)
T 3l77_A 14 IGEAIARALARDGYALALGARSVDRLEKIAHE-------LMQE-QGVEVFYHHLDVSKAESVEEFSKK---VLERFGDVD 82 (235)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHH-HCCCEEEEECCTTCHHHHHHHCC----HHHHHSSCS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhh-cCCeEEEEEeccCCHHHHHHHHHH---HHHhcCCCC
Confidence 79999999999999999999999887665432 0100 12233333 35666777777664 433333446
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++...
T Consensus 83 ~li~~Ag~ 90 (235)
T 3l77_A 83 VVVANAGL 90 (235)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 77776554
|
| >3awd_A GOX2181, putative polyol dehydrogenase; oxidoreductase; 1.80A {Gluconobacter oxydans} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.27 Score=40.24 Aligned_cols=76 Identities=13% Similarity=0.158 Sum_probs=44.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. +.+.-.+..++..=+.++.+++.++.. +.+...+=+++
T Consensus 25 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~v 94 (260)
T 3awd_A 25 IGLACVTALAEAGARVIIADLDEAMATKAVED-------LRMEGHDVSSVVMDVTNTESVQNAVRS---VHEQEGRVDIL 94 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCceEEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 69999999999999999999998776544321 000001122333334566666666543 32222233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 95 i~~Ag~ 100 (260)
T 3awd_A 95 VACAGI 100 (260)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776553
|
| >3ai3_A NADPH-sorbose reductase; rossmann-fold, NADPH-dependent reductase, short chain dehydrogenase/reductase, oxidoreductase; HET: NAP SOL SOE; 1.80A {Gluconobacter frateurii} PDB: 3ai2_A* 3ai1_A* | Back alignment and structure |
|---|
Probab=91.80 E-value=0.28 Score=40.40 Aligned_cols=75 Identities=11% Similarity=0.124 Sum_probs=45.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. +.+.. ..++.+ .=+.++++++.++.. +.+...+=+
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~-~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id 87 (263)
T 3ai3_A 19 IGLAIAEGFAKEGAHIVLVARQVDRLHEAARS-------LKEKF-GVRVLEVAVDVATPEGVDAVVES---VRSSFGGAD 87 (263)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHH-CCCEEEEECCTTSHHHHHHHHHH---HHHHHSSCS
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH-------HHHhc-CCceEEEEcCCCCHHHHHHHHHH---HHHHcCCCC
Confidence 79999999999999999999998876654321 11100 122322 234556666666543 322222335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++...
T Consensus 88 ~lv~~Ag~ 95 (263)
T 3ai3_A 88 ILVNNAGT 95 (263)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 67776543
|
| >1nff_A Putative oxidoreductase RV2002; directed evolution, GFP, SDR, hydroxysteroid dehydrogenase, structural genomics, PSI; HET: NAD; 1.80A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1nfq_A* 1nfr_A* | Back alignment and structure |
|---|
Probab=91.77 E-value=0.29 Score=40.35 Aligned_cols=73 Identities=11% Similarity=0.125 Sum_probs=46.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.- . ....++..=+.++++++.++.. +.+...+=+++
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~---------~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~iD~l 85 (260)
T 1nff_A 19 MGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL-A---------DAARYVHLDVTQPAQWKAAVDT---AVTAFGGLHVL 85 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT-G---------GGEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-h---------cCceEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999988776654321 0 1122333335566666666653 33323233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 86 v~~Ag~ 91 (260)
T 1nff_A 86 VNNAGI 91 (260)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776543
|
| >1jw9_B Molybdopterin biosynthesis MOEB protein; MOEB: modified rossmann fold, (2) Cys-X-X-Cys zinc-binding M MOAD: ubiquitin-like fold; 1.70A {Escherichia coli} SCOP: c.111.1.1 PDB: 1jwa_B* 1jwb_B* | Back alignment and structure |
|---|
Probab=91.76 E-value=0.25 Score=40.69 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=21.0
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNT 24 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~ 24 (286)
+|+.++.+|++.|. +|+++|++.
T Consensus 42 ~G~~va~~La~~Gv~~i~lvD~d~ 65 (249)
T 1jw9_B 42 LGCAASQYLASAGVGNLTLLDFDT 65 (249)
T ss_dssp HHHHHHHHHHHHTCSEEEEECCCB
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCC
Confidence 68999999999997 899999987
|
| >2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A* | Back alignment and structure |
|---|
Probab=91.71 E-value=0.32 Score=40.49 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=45.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. +.+.-.+..++..=+.++.+++.++.. +.+...+=+++
T Consensus 34 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iD~l 103 (277)
T 2rhc_B 34 IGLEIARRLGKEGLRVFVCARGEEGLRTTLKE-------LREAGVEADGRTCDVRSVPEIEALVAA---VVERYGPVDVL 103 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHTCSCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCceEEEECCCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 79999999999999999999998876554321 010001122233334566666666553 33333333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 104 v~~Ag~ 109 (277)
T 2rhc_B 104 VNNAGR 109 (277)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776543
|
| >3tzq_B Short-chain type dehydrogenase/reductase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; 2.50A {Mycobacterium marinum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=91.67 E-value=0.19 Score=41.77 Aligned_cols=74 Identities=18% Similarity=0.053 Sum_probs=47.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|++|.+.+|++++.+.+.+. .-.+...+..=+.++++++.++.. +.+...+=+++
T Consensus 23 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id~l 89 (271)
T 3tzq_B 23 IGLETSRVLARAGARVVLADLPETDLAGAAAS----------VGRGAVHHVVDLTNEVSVRALIDF---TIDTFGRLDIV 89 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSCHHHHHHH----------HCTTCEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH----------hCCCeEEEECCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998877665432 011223333345666667766653 33333334677
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|++....
T Consensus 90 v~nAg~~ 96 (271)
T 3tzq_B 90 DNNAAHS 96 (271)
T ss_dssp EECCCCC
T ss_pred EECCCCC
Confidence 7765543
|
| >3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=91.63 E-value=0.24 Score=41.92 Aligned_cols=76 Identities=11% Similarity=0.087 Sum_probs=46.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. +.+.-.+..++..=+.++.+++.++.. +.+...+=+++
T Consensus 43 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~id~l 112 (301)
T 3tjr_A 43 IGLATATEFARRGARLVLSDVDQPALEQAVNG-------LRGQGFDAHGVVCDVRHLDEMVRLADE---AFRLLGGVDVV 112 (301)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHHSSCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCceEEEEccCCCHHHHHHHHHH---HHHhCCCCCEE
Confidence 79999999999999999999999887665432 010001222333345566666666653 33322233577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 113 vnnAg~ 118 (301)
T 3tjr_A 113 FSNAGI 118 (301)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 776554
|
| >1dih_A Dihydrodipicolinate reductase; oxidoreductase; HET: NDP; 2.20A {Escherichia coli} SCOP: c.2.1.3 d.81.1.3 PDB: 1arz_A* 1dru_A* 1drv_A* 1drw_A* | Back alignment and structure |
|---|
Probab=91.55 E-value=0.14 Score=42.96 Aligned_cols=89 Identities=13% Similarity=0.193 Sum_probs=52.1
Q ss_pred ccHHHHHHHH-hCCCcEE-EEcCCchHH--HH---H---HHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 2 ISTLKLFFLQ-FQGHDVI-VYDKNTDAS--QT---L---AKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 2 ~G~~lA~~L~-~~G~~V~-~~dr~~~~~--~~---l---~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
||..+++.+. ..|++|. ++|+++++. .. + ...++...++++++++++|+||-+.+ |....+.+.
T Consensus 17 mG~~~~~~~~~~~~~elva~~d~~~~~~~g~d~~~~~g~~~~~v~~~~dl~~~l~~~DvVIDft~-p~~~~~~~~----- 90 (273)
T 1dih_A 17 MGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAVKDDFDVFIDFTR-PEGTLNHLA----- 90 (273)
T ss_dssp HHHHHHHHHHHSTTEECCCEECCTTCTTCSCCTTCSSSSSCCSCCEESCSTTTTTSCSEEEECSC-HHHHHHHHH-----
T ss_pred HHHHHHHHHHhCCCCEEEEEEecCchhhhhhhHHHHcCCCcCCceecCCHHHHhcCCCEEEEcCC-hHHHHHHHH-----
Confidence 7888888776 4577766 778876431 11 1 11245556788888889999995554 445555443
Q ss_pred cccCCCCCEEEEcCC-CCchHHHHHHH
Q psy764 72 LKHAKPGVIVIDSST-VDPQVPQTLSN 97 (286)
Q Consensus 72 ~~~l~~g~ivid~st-~~p~~~~~~~~ 97 (286)
..+..|.-+|-.+| .++....++.+
T Consensus 91 -~a~~~G~~vVigTtG~~~e~~~~L~~ 116 (273)
T 1dih_A 91 -FCRQHGKGMVIGTTGFDEAGKQAIRD 116 (273)
T ss_dssp -HHHHTTCEEEECCCCCCHHHHHHHHH
T ss_pred -HHHhCCCCEEEECCCCCHHHHHHHHH
Confidence 23445665665444 33444434433
|
| >3v8b_A Putative dehydrogenase, possibly 3-oxoacyl-[acyl- protein] reductase; PSI-biology, structural genomics, protein structure initiati nysgrc; 2.70A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=91.53 E-value=0.23 Score=41.61 Aligned_cols=76 Identities=13% Similarity=0.071 Sum_probs=47.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|++|.+.+|++++.+++.+.- . +.-.++..+-.=+.++.+++.++.. +.+...+=+++
T Consensus 40 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l-~------~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 109 (283)
T 3v8b_A 40 IGRATALALAADGVTVGALGRTRTEVEEVADEI-V------GAGGQAIALEADVSDELQMRNAVRD---LVLKFGHLDIV 109 (283)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHH-T------TTTCCEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHH-H------hcCCcEEEEEccCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 799999999999999999999998877664420 0 0001122222335666677776653 33333344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+...+
T Consensus 110 VnnAg~ 115 (283)
T 3v8b_A 110 VANAGI 115 (283)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776554
|
| >2wm3_A NMRA-like family domain containing protein 1; unknown function; HET: NAP NFL; 1.85A {Homo sapiens} PDB: 2wmd_A* 2exx_A* 3dxf_A 3e5m_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.15 Score=42.82 Aligned_cols=55 Identities=18% Similarity=0.129 Sum_probs=41.0
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHH--HHHHHcCCccc-------CCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDAS--QTLAKEGANMA-------LSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~--~~l~~~g~~~~-------~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|++.| ++|++.+|++++. +.+...|+... +++.++++++|+||.+.+
T Consensus 17 iG~~l~~~L~~~g~~~V~~~~R~~~~~~~~~l~~~~~~~~~~D~~d~~~l~~~~~~~d~vi~~a~ 81 (299)
T 2wm3_A 17 QGGSVARTLLEDGTFKVRVVTRNPRKKAAKELRLQGAEVVQGDQDDQVIMELALNGAYATFIVTN 81 (299)
T ss_dssp HHHHHHHHHHHHCSSEEEEEESCTTSHHHHHHHHTTCEEEECCTTCHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHhcCCceEEEEEcCCCCHHHHHHHHCCCEEEEecCCCHHHHHHHHhcCCEEEEeCC
Confidence 6899999999998 9999999997653 34444454321 235567789999999875
|
| >2zat_A Dehydrogenase/reductase SDR family member 4; alpha/beta, oxidoreductase; HET: NAP; 1.50A {Sus scrofa} PDB: 3o4r_A* | Back alignment and structure |
|---|
Probab=91.50 E-value=0.31 Score=40.06 Aligned_cols=76 Identities=12% Similarity=0.045 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. +.+.-.+...+..=+.++.+++.++.. +.+...+=+++
T Consensus 26 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~iD~l 95 (260)
T 2zat_A 26 IGLAIARRLAQDGAHVVVSSRKQENVDRTVAT-------LQGEGLSVTGTVCHVGKAEDRERLVAM---AVNLHGGVDIL 95 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCceEEEEccCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998776554321 000000112222234555666666543 22222233577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 96 v~~Ag~ 101 (260)
T 2zat_A 96 VSNAAV 101 (260)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776554
|
| >1zk4_A R-specific alcohol dehydrogenase; short chain reductases/dehydrogenases, magnesium dependence, oxidoreductase; HET: NAP; 1.00A {Lactobacillus brevis} SCOP: c.2.1.2 PDB: 1nxq_A* 1zjy_A* 1zjz_A* 1zk0_A* 1zk1_A* 1zk2_A 1zk3_A | Back alignment and structure |
|---|
Probab=91.49 E-value=0.26 Score=40.10 Aligned_cols=74 Identities=15% Similarity=0.202 Sum_probs=46.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|++.|++|++.+|++++.+.+.+. .. . .+..++..=+.++++++.++.. +.+...+=++
T Consensus 18 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----~----~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~ 85 (251)
T 1zk4_A 18 IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSVGT-----P----DQIQFFQHDSSDEDGWTKLFDA---TEKAFGPVST 85 (251)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----T----TTEEEEECCTTCHHHHHHHHHH---HHHHHSSCCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhhc-----c----CceEEEECCCCCHHHHHHHHHH---HHHHhCCCCE
Confidence 79999999999999999999998876655432 10 0 1223333345566667766653 3333333467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 86 li~~Ag~ 92 (251)
T 1zk4_A 86 LVNNAGI 92 (251)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776543
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.48 E-value=0.53 Score=40.52 Aligned_cols=64 Identities=13% Similarity=0.169 Sum_probs=41.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc------CCHHHHhh-----cCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA------LSLSTLAS-----GAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~------~s~~e~~~-----~adivi~~v~~~~~~~~v~ 65 (286)
||..+++.+...|.+|++.+|++++.+.+.+.|.... .+..+.+. ..|+||-++..+..++..+
T Consensus 182 iG~~~~~~a~~~Ga~V~~~~~~~~~~~~~~~~g~~~~~d~~~~~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~ 256 (347)
T 2hcy_A 182 LGSLAVQYAKAMGYRVLGIDGGEGKEELFRSIGGEVFIDFTKEKDIVGAVLKATDGGAHGVINVSVSEAAIEAST 256 (347)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSTTHHHHHHHTTCCEEEETTTCSCHHHHHHHHHTSCEEEEEECSSCHHHHHHHT
T ss_pred HHHHHHHHHHHCCCcEEEEcCCHHHHHHHHHcCCceEEecCccHhHHHHHHHHhCCCCCEEEECCCcHHHHHHHH
Confidence 6788888888899999999999988877766664321 22333332 3566666666544444443
|
| >2ew8_A (S)-1-phenylethanol dehydrogenase; transferase; 2.10A {Azoarcus SP} SCOP: c.2.1.2 PDB: 2ewm_A* | Back alignment and structure |
|---|
Probab=91.48 E-value=0.22 Score=40.68 Aligned_cols=72 Identities=11% Similarity=0.109 Sum_probs=43.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc-hHHHH-HHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT-DASQT-LAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~-~~~~~-l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|++.|++|.+.+|++ ++.+. +.+.+ .+...+-.=+.++++++.++.. +.+...+=+
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~-----------~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id 84 (249)
T 2ew8_A 19 IGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLG-----------RRVLTVKCDVSQPGDVEAFGKQ---VISTFGRCD 84 (249)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTT-----------CCEEEEECCTTCHHHHHHHHHH---HHHHHSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHhcC-----------CcEEEEEeecCCHHHHHHHHHH---HHHHcCCCC
Confidence 79999999999999999999998 66543 11111 1122222234566666666543 333233336
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++...
T Consensus 85 ~lv~nAg~ 92 (249)
T 2ew8_A 85 ILVNNAGI 92 (249)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 77776554
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=91.46 E-value=0.38 Score=41.52 Aligned_cols=64 Identities=16% Similarity=0.194 Sum_probs=41.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCccc-----CCHHHHhh------cCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMA-----LSLSTLAS------GAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-----~s~~e~~~------~adivi~~v~~~~~~~~v~ 65 (286)
+|...++.+...|. +|++.++++++.+.+.+.|+... .+..+.+. ..|+||-|+..+..++..+
T Consensus 179 vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~~~Ga~~~~~~~~~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~ 254 (348)
T 2d8a_A 179 LGLLGIAVAKASGAYPVIVSEPSDFRRELAKKVGADYVINPFEEDVVKEVMDITDGNGVDVFLEFSGAPKALEQGL 254 (348)
T ss_dssp HHHHHHHHHHHTTCCSEEEECSCHHHHHHHHHHTCSEEECTTTSCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCEEECCCCcCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHH
Confidence 57777787778898 99999999999888777775421 12222221 4677777766544444433
|
| >1xq6_A Unknown protein; structural genomics, protein structure initiative, CESG, AT5G02240, NADP, center for eukaryotic structural genomics; HET: NAP; 1.80A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 1ybm_A* 2q46_A* 2q4b_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.18 Score=40.89 Aligned_cols=54 Identities=9% Similarity=0.062 Sum_probs=36.5
Q ss_pred ccHHHHHHHHhC--CCcEEEEcCCchHHHHHHHcCCcc-------cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQ--GHDVIVYDKNTDASQTLAKEGANM-------ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~--G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|++. |++|++.+|++++.+.+ ..++.. .+++.+++++.|+||.+..
T Consensus 16 iG~~l~~~l~~~~~g~~V~~~~r~~~~~~~~-~~~~~~~~~D~~d~~~~~~~~~~~d~vi~~a~ 78 (253)
T 1xq6_A 16 TGQIVYKKLKEGSDKFVAKGLVRSAQGKEKI-GGEADVFIGDITDADSINPAFQGIDALVILTS 78 (253)
T ss_dssp HHHHHHHHHHHTTTTCEEEEEESCHHHHHHT-TCCTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEcCCCchhhc-CCCeeEEEecCCCHHHHHHHHcCCCEEEEecc
Confidence 699999999999 89999999998776544 112211 1133445566777666654
|
| >2ae2_A Protein (tropinone reductase-II); oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to pseudotropine; HET: NAP PTO; 1.90A {Datura stramonium} SCOP: c.2.1.2 PDB: 2ae1_A* 1ipe_A* 1ipf_A* | Back alignment and structure |
|---|
Probab=91.37 E-value=0.31 Score=40.10 Aligned_cols=76 Identities=12% Similarity=0.082 Sum_probs=45.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC-CCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-KPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l-~~g~i 80 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. +.+.-.+..++..=+.++++++.++.. +.+.. .+=++
T Consensus 21 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~g~id~ 90 (260)
T 2ae2_A 21 IGYGIVEELASLGASVYTCSRNQKELNDCLTQ-------WRSKGFKVEASVCDLSSRSERQELMNT---VANHFHGKLNI 90 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCEEEEEECCTTCHHHHHHHHHH---HHHHTTTCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCCE
Confidence 79999999999999999999998876654321 000001122222334566667666653 33333 23367
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 91 lv~~Ag~ 97 (260)
T 2ae2_A 91 LVNNAGI 97 (260)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776554
|
| >1b8p_A Protein (malate dehydrogenase); oxidoreductase; 1.90A {Aquaspirillum arcticum} SCOP: c.2.1.5 d.162.1.1 PDB: 1b8u_A* 1b8v_A* 3d5t_A | Back alignment and structure |
|---|
Probab=91.36 E-value=0.37 Score=41.38 Aligned_cols=55 Identities=15% Similarity=0.035 Sum_probs=40.4
Q ss_pred ccHHHHHHHHhCCC-------cEEEEcCC----chHHHH----HHHc------CCcccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGH-------DVIVYDKN----TDASQT----LAKE------GANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-------~V~~~dr~----~~~~~~----l~~~------g~~~~~s~~e~~~~adivi~~v~ 56 (286)
+|++++..|+..|+ +|.++|++ +++.+. +... .+....+..+++++||+||++..
T Consensus 17 VG~~l~~~L~~~~~~~~~~~~ev~l~Di~~~~~~~~~~g~~~dl~~~~~~~~~~i~~~~~~~~al~~aD~Vi~~ag 92 (329)
T 1b8p_A 17 ICYSLLFRIANGDMLGKDQPVILQLLEIPNEKAQKALQGVMMEIDDCAFPLLAGMTAHADPMTAFKDADVALLVGA 92 (329)
T ss_dssp HHHHHHHHHHTTTTTCTTCCEEEEEECCSCHHHHHHHHHHHHHHHTTTCTTEEEEEEESSHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCcCCCCCCEEEEEcCCCccccccchhhHHHHhhhcccccCcEEEecCcHHHhCCCCEEEEeCC
Confidence 68899999998885 89999999 554432 3321 12234678899999999999875
|
| >1hxh_A 3BETA/17BETA-hydroxysteroid dehydrogenase; alpha-beta, rossmann fold, short-chain dehydrogenase, oxidoreductase; 1.22A {Comamonas testosteroni} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.35 E-value=0.19 Score=41.26 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. + .+..++..=+.++++++.++.. +.+...+=++
T Consensus 18 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id~ 83 (253)
T 1hxh_A 18 VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELG-----------ERSMFVRHDVSSEADWTLVMAA---VQRRLGTLNV 83 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHC-----------TTEEEECCCTTCHHHHHHHHHH---HHHHHCSCCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHcC-----------CceEEEEccCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999999999998877665432 1 0111222224555666666653 3332323367
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 84 lv~~Ag~ 90 (253)
T 1hxh_A 84 LVNNAGI 90 (253)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776554
|
| >4egf_A L-xylulose reductase; structural genomics, ssgcid, seattle structural genomics CEN infectious disease, oxidoreductase; 2.30A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=91.32 E-value=0.3 Score=40.39 Aligned_cols=75 Identities=7% Similarity=0.048 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEE--EEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFI--ISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adiv--i~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++++.|+++|++|.+.+|++++.+.+.+. +.+. ...++. -.=+.++++++.++.. +.+...+=+
T Consensus 32 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~-~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id 100 (266)
T 4egf_A 32 IGADIARAFAAAGARLVLSGRDVSELDAARRA-------LGEQ-FGTDVHTVAIDLAEPDAPAELARR---AAEAFGGLD 100 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHH-HCCCEEEEECCTTSTTHHHHHHHH---HHHHHTSCS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHHh-cCCcEEEEEecCCCHHHHHHHHHH---HHHHcCCCC
Confidence 79999999999999999999998877655432 1110 122232 2334566666666653 333333345
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++..+
T Consensus 101 ~lv~nAg~ 108 (266)
T 4egf_A 101 VLVNNAGI 108 (266)
T ss_dssp EEEEECCC
T ss_pred EEEECCCc
Confidence 67776544
|
| >3p19_A BFPVVD8, putative blue fluorescent protein; rossmann-fold, oxidoreductase; HET: NAP; 2.05A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=91.29 E-value=0.099 Score=43.47 Aligned_cols=70 Identities=10% Similarity=0.071 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|+.++.+.+... ....+..=+.++.+++.++.. +.+...+=+++
T Consensus 28 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------------~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 91 (266)
T 3p19_A 28 IGEAIARRFSEEGHPLLLLARRVERLKALNLP-------------NTLCAQVDVTDKYTFDTAITR---AEKIYGPADAI 91 (266)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCHHHHHTTCCT-------------TEEEEECCTTCHHHHHHHHHH---HHHHHCSEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHhhcC-------------CceEEEecCCCHHHHHHHHHH---HHHHCCCCCEE
Confidence 79999999999999999999998765433111 122233334566666666553 32222223566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 92 vnnAg~ 97 (266)
T 3p19_A 92 VNNAGM 97 (266)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 766544
|
| >1iy8_A Levodione reductase; oxidoreductase; HET: NAD; 1.60A {Leifsonia aquatica} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.28 E-value=0.31 Score=40.21 Aligned_cols=76 Identities=9% Similarity=0.058 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. +.+.....++.+ .=+.++++++.++.. +.+...+=+
T Consensus 25 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id 94 (267)
T 1iy8_A 25 LGRATAVRLAAEGAKLSLVDVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQVEAYVTA---TTERFGRID 94 (267)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHHHHHHHH---HHHHHSCCS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhhcCCceEEEEEccCCCHHHHHHHHHH---HHHHcCCCC
Confidence 79999999999999999999998876654321 111100222332 234555666666653 333232336
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++...
T Consensus 95 ~lv~nAg~ 102 (267)
T 1iy8_A 95 GFFNNAGI 102 (267)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 77776543
|
| >3rih_A Short chain dehydrogenase or reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PG5; 2.15A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=91.27 E-value=0.28 Score=41.32 Aligned_cols=76 Identities=13% Similarity=0.048 Sum_probs=47.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. ... . ..+...+..=+.++.+++.++.. +.+...+=++
T Consensus 53 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~l~~~--~-----~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~ 122 (293)
T 3rih_A 53 IGRGIATVFARAGANVAVAARSPRELSSVTAELGEL--G-----AGNVIGVRLDVSDPGSCADAART---VVDAFGALDV 122 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGGHHHHHHHTTS--S-----SSCEEEEECCTTCHHHHHHHHHH---HHHHHSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh--C-----CCcEEEEEEeCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999999999999887665432 100 0 01122233334566667666653 3333334467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|+...+
T Consensus 123 lvnnAg~ 129 (293)
T 3rih_A 123 VCANAGI 129 (293)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776544
|
| >3svt_A Short-chain type dehydrogenase/reductase; ssgcid, seattle structural genomics center for infectious DI oxidoreductase; 2.00A {Mycobacterium ulcerans} | Back alignment and structure |
|---|
Probab=91.25 E-value=0.2 Score=41.76 Aligned_cols=79 Identities=13% Similarity=0.037 Sum_probs=46.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|+++|++|.+.+|++++.+.+.+. +...... .....++..=+.++++++.++.. +.+...+=+++
T Consensus 23 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-l~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id~l 95 (281)
T 3svt_A 23 IGKGVAAGLVAAGASVMIVGRNPDKLAGAVQE-LEALGAN---GGAIRYEPTDITNEDETARAVDA---VTAWHGRLHGV 95 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHTTCCS---SCEEEEEECCTTSHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHhCCC---CceEEEEeCCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999998877655432 0000000 00122233335566667766653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 96 v~nAg~ 101 (281)
T 3svt_A 96 VHCAGG 101 (281)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 776654
|
| >3i6i_A Putative leucoanthocyanidin reductase 1; rossmann fold, short chain dehydrogenase reductase, flavonoi oxidoreductase; HET: NDP; 1.75A {Vitis vinifera} PDB: 3i5m_A 3i52_A* 3i6q_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.24 Score=42.58 Aligned_cols=56 Identities=9% Similarity=0.134 Sum_probs=41.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc----hHHHH---HHHcCCccc-------CCHHHHhh--cCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT----DASQT---LAKEGANMA-------LSLSTLAS--GAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~----~~~~~---l~~~g~~~~-------~s~~e~~~--~adivi~~v~~ 57 (286)
+|+.+++.|++.||+|++.+|++ ++.+. +...++... +++.++++ ++|+||.+...
T Consensus 22 iG~~l~~~L~~~g~~V~~l~R~~~~~~~~~~~~~~l~~~~v~~~~~Dl~d~~~l~~~~~~~~~d~Vi~~a~~ 93 (346)
T 3i6i_A 22 IGQFVATASLDAHRPTYILARPGPRSPSKAKIFKALEDKGAIIVYGLINEQEAMEKILKEHEIDIVVSTVGG 93 (346)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHTTCEEEECCTTCHHHHHHHHHHTTCCEEEECCCG
T ss_pred HHHHHHHHHHHCCCCEEEEECCCCCChhHHHHHHHHHhCCcEEEEeecCCHHHHHHHHhhCCCCEEEECCch
Confidence 79999999999999999999976 44442 333454322 24566778 99999998874
|
| >1fmc_A 7 alpha-hydroxysteroid dehydrogenase; short-chain dehydrogenase/reductase, bIle acid catabolism, oxidoreductase; HET: CHO NAD; 1.80A {Escherichia coli} SCOP: c.2.1.2 PDB: 1ahi_A* 1ahh_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.32 Score=39.55 Aligned_cols=30 Identities=27% Similarity=0.317 Sum_probs=26.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|++.|++|++.+|++++.+.+.
T Consensus 23 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 52 (255)
T 1fmc_A 23 IGKEIAITFATAGASVVVSDINADAANHVV 52 (255)
T ss_dssp HHHHHHHHHHTTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 699999999999999999999987765543
|
| >1yb1_A 17-beta-hydroxysteroid dehydrogenase type XI; short chain dehydrogenase, HUM structural genomics, structural genomics consortium, SGC; HET: AE2; 1.95A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.24 E-value=0.39 Score=39.75 Aligned_cols=76 Identities=12% Similarity=0.180 Sum_probs=46.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|++++.+.+.+. +.+.-.+..++..=+.++++++.++.. +.+...+=++|
T Consensus 43 IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dl~~~~~v~~~~~~---~~~~~g~iD~l 112 (272)
T 1yb1_A 43 IGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKGLGAKVHTFVVDCSNREDIYSSAKK---VKAEIGDVSIL 112 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHTCCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEEcCHHHHHHHHHH-------HHhcCCeEEEEEeeCCCHHHHHHHHHH---HHHHCCCCcEE
Confidence 79999999999999999999998876654321 000001122233334556666666653 33333334677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 113 i~~Ag~ 118 (272)
T 1yb1_A 113 VNNAGV 118 (272)
T ss_dssp EECCCC
T ss_pred EECCCc
Confidence 777654
|
| >3gem_A Short chain dehydrogenase; structural genomics, APC65077, oxidoreductase, PSI-2, protein structure initiative; 1.83A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.4 Score=39.55 Aligned_cols=70 Identities=19% Similarity=0.200 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHH-HHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQT-LAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~-l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|++.|++|.+.+|++++... +.+.+ ...+..=+.++.+++.++.. +.+...+=++
T Consensus 39 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iD~ 102 (260)
T 3gem_A 39 VGLHCALRLLEHGHRVIISYRTEHASVTELRQAG-------------AVALYGDFSCETGIMAFIDL---LKTQTSSLRA 102 (260)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCHHHHHHHHHT-------------CEEEECCTTSHHHHHHHHHH---HHHHCSCCSE
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHhcC-------------CeEEECCCCCHHHHHHHHHH---HHHhcCCCCE
Confidence 7999999999999999999999876432 22222 23333345666677776653 3333334467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|+....
T Consensus 103 lv~nAg~ 109 (260)
T 3gem_A 103 VVHNASE 109 (260)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 7776553
|
| >1ae1_A Tropinone reductase-I; oxidoreductase, tropane alkaloid biosynthesis, reduction of tropinone to tropine, short-chain dehydrogenase; HET: NAP; 2.40A {Datura stramonium} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=91.22 E-value=0.39 Score=39.79 Aligned_cols=76 Identities=12% Similarity=-0.015 Sum_probs=45.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC-CCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-KPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l-~~g~i 80 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. +.+.-.+...+..=+.++++++.++.. +.... .+=++
T Consensus 33 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~g~id~ 102 (273)
T 1ae1_A 33 IGYAIVEELAGLGARVYTCSRNEKELDECLEI-------WREKGLNVEGSVCDLLSRTERDKLMQT---VAHVFDGKLNI 102 (273)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHTTSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCceEEEECCCCCHHHHHHHHHH---HHHHcCCCCcE
Confidence 79999999999999999999998876654321 000001122222334566666666653 33322 23367
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 103 lv~nAg~ 109 (273)
T 1ae1_A 103 LVNNAGV 109 (273)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776554
|
| >2vt3_A REX, redox-sensing transcriptional repressor REX; transcriptional regulation, redox poise; HET: ATP; 2.0A {Bacillus subtilis} PDB: 2vt2_A* | Back alignment and structure |
|---|
Probab=91.20 E-value=0.051 Score=43.90 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=35.6
Q ss_pred ccHHHHHH--HHhCCCcEE-EEcCCchHHHHHHH-cCCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFF--LQFQGHDVI-VYDKNTDASQTLAK-EGANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~--L~~~G~~V~-~~dr~~~~~~~l~~-~g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
+|..+++. +...|+++. ++|+++++...... .++...+++.+++++.|++++|+|+.
T Consensus 96 ~G~~La~~~~~~~~g~~iVg~~D~dp~k~g~~i~gv~V~~~~dl~eli~~~D~ViIAvPs~ 156 (215)
T 2vt3_A 96 LGTAFLHYNFTKNNNTKISMAFDINESKIGTEVGGVPVYNLDDLEQHVKDESVAILTVPAV 156 (215)
T ss_dssp HHHHHHHCC------CCEEEEEESCTTTTTCEETTEEEEEGGGHHHHCSSCCEEEECSCHH
T ss_pred HHHHHHHHHhcccCCcEEEEEEeCCHHHHHhHhcCCeeechhhHHHHHHhCCEEEEecCch
Confidence 57777773 334577765 55999987654321 12334567888886669999999964
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=91.13 E-value=0.2 Score=42.65 Aligned_cols=55 Identities=13% Similarity=0.063 Sum_probs=38.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-------CCcc--------cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-------GANM--------ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-------g~~~--------~~s~~e~~~~adivi~~v~ 56 (286)
||+.+++.|++.|++|++.+|++++.+.+.+. ++.. .++..++++++|+||-+..
T Consensus 23 iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~d~vih~A~ 92 (342)
T 1y1p_A 23 VASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIAS 92 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcccHHHHHHHhhccCCCceEEEEecCCcChHHHHHHHcCCCEEEEeCC
Confidence 79999999999999999999998776554321 2211 1234455667888887764
|
| >2bka_A CC3, TAT-interacting protein TIP30; NADPH, PEG600, transcription; HET: NDP PE8; 1.7A {Homo sapiens} SCOP: c.2.1.2 PDB: 2fmu_A | Back alignment and structure |
|---|
Probab=91.13 E-value=0.051 Score=44.13 Aligned_cols=26 Identities=15% Similarity=0.031 Sum_probs=23.3
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHH
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDAS 27 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~ 27 (286)
||..+++.|++.|+ +|++.+|++++.
T Consensus 30 iG~~l~~~L~~~G~~~~V~~~~r~~~~~ 57 (242)
T 2bka_A 30 TGRVLLKEILEQGLFSKVTLIGRRKLTF 57 (242)
T ss_dssp HHHHHHHHHHHHTCCSEEEEEESSCCCC
T ss_pred HHHHHHHHHHcCCCCCEEEEEEcCCCCc
Confidence 79999999999999 999999987653
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=91.13 E-value=0.85 Score=40.02 Aligned_cols=94 Identities=16% Similarity=0.154 Sum_probs=59.9
Q ss_pred HHHHHHHhCCCcEEEE-------cCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 5 LKLFFLQFQGHDVIVY-------DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~-------dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
..++.|.+.||+|.+= .-+. +...+.|+.+.++.+++.+++|+|+.. ..+-. . .+. ....+.+++
T Consensus 21 ~~v~~L~~~G~~V~ve~~ag~~~~~~d---~~y~~aGa~i~~~~~~~~~~adiil~v-~~p~~-~-~~~--~~~i~~l~~ 92 (384)
T 1l7d_A 21 EVVKKLVGLGFEVIVEQGAGVGASITD---DALTAAGATIASTAAQALSQADVVWKV-QRPMT-A-EEG--TDEVALIKE 92 (384)
T ss_dssp HHHHHHHHTTCEEEEETTTTGGGTCCH---HHHHHTTCEEESSHHHHHSSCSEEEEE-ECCCC-G-GGS--CCGGGGSCT
T ss_pred HHHHHHHhCCCEEEEEcCCCccCCCCH---HHHHHCCCEEecChhhhhcCCCEEEEe-cCccc-c-cCC--HHHHHhhcc
Confidence 3567888999999872 2222 345567999999999999999987754 33300 0 000 014455777
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
++.++-. ..+.......+.+.++|+.+++
T Consensus 93 ~~~~i~~--~~~~~~~~~~~~~~~~gi~~~~ 121 (384)
T 1l7d_A 93 GAVLMCH--LGALTNRPVVEALTKRKITAYA 121 (384)
T ss_dssp TCEEEEE--CCGGGCHHHHHHHHHTTCEEEE
T ss_pred CCEEEEE--ecccCCHHHHHHHHHCCCEEEE
Confidence 8888743 3344445556677788887774
|
| >2qrj_A Saccharopine dehydrogenase, NAD+, L-lysine- forming; sulfate, rossmann fold, alpha-aminoadipate pathway, fungal lysine biosynthesis; 1.60A {Saccharomyces cerevisiae} PDB: 2qrk_A* 2qrl_A* 2q99_A 3ugk_A 3uh1_A* 3uha_A* | Back alignment and structure |
|---|
Probab=91.05 E-value=0.075 Score=46.82 Aligned_cols=72 Identities=15% Similarity=0.182 Sum_probs=47.1
Q ss_pred ccHHHHHHHHhCCC---cEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC-CC
Q psy764 2 ISTLKLFFLQFQGH---DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-KP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~---~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l-~~ 77 (286)
+|+.-++-+..-|. .|++||+++.+. |... +.+.++|+||-|+..+.....++.. ..++.+ ++
T Consensus 226 vG~~A~~~a~~lGa~~~~V~v~D~~~~~~------g~~~-----~~i~~aDivIn~vlig~~aP~Lvt~--e~v~~m~k~ 292 (394)
T 2qrj_A 226 CGSGAIDLLHKVGIPDANILKWDIKETSR------GGPF-----DEIPQADIFINCIYLSKPIAPFTNM--EKLNNPNRR 292 (394)
T ss_dssp HHHHHHHHHHHTTCCGGGEEEECHHHHTT------CSCC-----THHHHSSEEEECCCCCSSCCCSCCH--HHHCCTTCC
T ss_pred HHHHHHHHHHhCCCCcCceEEeecccccc------CCch-----hhHhhCCEEEECcCcCCCCCcccCH--HHHhcCcCC
Confidence 35566677778897 899999886321 4332 3466999999999963322222211 133446 89
Q ss_pred CCEEEEcCC
Q psy764 78 GVIVIDSST 86 (286)
Q Consensus 78 g~ivid~st 86 (286)
|.+|||.|.
T Consensus 293 gsVIVDVA~ 301 (394)
T 2qrj_A 293 LRTVVDVSA 301 (394)
T ss_dssp CCEEEETTC
T ss_pred CeEEEEEec
Confidence 999999974
|
| >3lf2_A Short chain oxidoreductase Q9HYA2; SDR, SCOR, rossmann fold; HET: NAP; 2.30A {Pseudomonas aeruginosa} PDB: 3lf1_A* | Back alignment and structure |
|---|
Probab=90.89 E-value=0.42 Score=39.41 Aligned_cols=76 Identities=11% Similarity=0.055 Sum_probs=47.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhc--CcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASG--AEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~--adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. +.+.... ...+..=+.++.+++.++.. +.+...+=+
T Consensus 20 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id 89 (265)
T 3lf2_A 20 IGLATVELLLEAGAAVAFCARDGERLRAAESA-------LRQRFPGARLFASVCDVLDALQVRAFAEA---CERTLGCAS 89 (265)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHSTTCCEEEEECCTTCHHHHHHHHHH---HHHHHCSCS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHHhcCCceEEEEeCCCCCHHHHHHHHHH---HHHHcCCCC
Confidence 79999999999999999999998877665432 1110111 22222335566677776653 333333346
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++...
T Consensus 90 ~lvnnAg~ 97 (265)
T 3lf2_A 90 ILVNNAGQ 97 (265)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 77776654
|
| >3tox_A Short chain dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; HET: NAP; 1.93A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.87 E-value=0.19 Score=42.12 Aligned_cols=74 Identities=14% Similarity=0.080 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|++.|++|.+.+|++++.+.+.+.- . + ...++.+ .=+.++.+++.++.. +.....+=+
T Consensus 20 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~-~------~--~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iD 87 (280)
T 3tox_A 20 IGRAAALLFAREGAKVVVTARNGNALAELTDEI-A------G--GGGEAAALAGDVGDEALHEALVEL---AVRRFGGLD 87 (280)
T ss_dssp HHHHHHHHHHHTTCEEEECCSCHHHHHHHHHHH-T------T--TTCCEEECCCCTTCHHHHHHHHHH---HHHHHSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-H------h--cCCcEEEEECCCCCHHHHHHHHHH---HHHHcCCCC
Confidence 799999999999999999999998877665420 0 0 0122222 234556666666653 333333346
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++..+
T Consensus 88 ~lvnnAg~ 95 (280)
T 3tox_A 88 TAFNNAGA 95 (280)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 77776553
|
| >2czc_A Glyceraldehyde-3-phosphate dehydrogenase; glycolysis, NAD, oxidoreductase, structural genomics; HET: NAD; 2.00A {Pyrococcus horikoshii} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=90.84 E-value=0.44 Score=41.07 Aligned_cols=75 Identities=20% Similarity=0.173 Sum_probs=49.9
Q ss_pred ccHHHHHHHHhCC-CcE-EEEcCCchHHHHHHH-cC------------------CcccCCHHHHhhcCcEEEEecCChhH
Q psy764 2 ISTLKLFFLQFQG-HDV-IVYDKNTDASQTLAK-EG------------------ANMALSLSTLASGAEFIISMLPASQD 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V-~~~dr~~~~~~~l~~-~g------------------~~~~~s~~e~~~~adivi~~v~~~~~ 60 (286)
||..+++.|.+.. .+| .+.|+++++...+.+ .| +.+..++.+++.++|+||.|.|....
T Consensus 13 iG~~~~r~l~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~~~v~~d~~~l~~~vDvV~~aTp~~~h 92 (334)
T 2czc_A 13 IGKRVAYAVTKQDDMELIGITKTKPDFEAYRAKELGIPVYAASEEFIPRFEKEGFEVAGTLNDLLEKVDIIVDATPGGIG 92 (334)
T ss_dssp HHHHHHHHHHTCTTEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHHTCCCSCBHHHHHTTCSEEEECCSTTHH
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCCHHHHHHHHHhcCccccccccccceeccCCceEEcCcHHHhccCCCEEEECCCcccc
Confidence 6788888887754 454 456888777765543 23 24556888988899999999997654
Q ss_pred HHHHhcCCccccccCCCCCEEEE
Q psy764 61 VLDAYDGSDGILKHAKPGVIVID 83 (286)
Q Consensus 61 ~~~v~~~~~~l~~~l~~g~ivid 83 (286)
.+... .++..|+.|+.
T Consensus 93 ~~~a~-------~~l~aGk~Vi~ 108 (334)
T 2czc_A 93 AKNKP-------LYEKAGVKAIF 108 (334)
T ss_dssp HHHHH-------HHHHHTCEEEE
T ss_pred HHHHH-------HHHHcCCceEe
Confidence 44332 22345666663
|
| >1xkq_A Short-chain reductase family member (5D234); parrallel beta-sheet of seven strands in the order 3214567; HET: NDP; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.80 E-value=0.33 Score=40.38 Aligned_cols=79 Identities=6% Similarity=0.083 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+.+.+. +...... -.+..++..=+.++++++.++.. +.+...+=+++
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~~~---~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iD~l 90 (280)
T 1xkq_A 18 IGRTTAILFAQEGANVTITGRSSERLEETRQI-ILKSGVS---EKQVNSVVADVTTEDGQDQIINS---TLKQFGKIDVL 90 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-HHTTTCC---GGGEEEEECCTTSHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-HHHcCCC---CcceEEEEecCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 79999999999999999999998877655332 0000000 00122333345566666666653 33323333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 91 v~nAg~ 96 (280)
T 1xkq_A 91 VNNAGA 96 (280)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776543
|
| >2uvd_A 3-oxoacyl-(acyl-carrier-protein) reductase; beta-ketoacyl- (acyl carrier protein) reductase, short-chain dehydrogenase/reductase (SDR); 2.4A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=90.77 E-value=0.4 Score=38.98 Aligned_cols=76 Identities=20% Similarity=0.209 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcC-CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK-NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|++.|++|.+.+| ++++.+.+.+. +.+.-.+...+..=+.++++++.++.. +.+...+=++
T Consensus 16 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~ 85 (246)
T 2uvd_A 16 IGRAIAIDLAKQGANVVVNYAGNEQKANEVVDE-------IKKLGSDAIAVRADVANAEDVTNMVKQ---TVDVFGQVDI 85 (246)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHHSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 799999999999999999998 77766554321 000001112222234566666666653 3332333367
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 86 lv~nAg~ 92 (246)
T 2uvd_A 86 LVNNAGV 92 (246)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776554
|
| >3sx2_A Putative 3-ketoacyl-(acyl-carrier-protein) reduct; ssgcid, 3-ketoacyl-(acyl-carrier-protein) reductase, mycobac paratuberculosis; HET: NAD; 1.50A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=90.74 E-value=0.45 Score=39.48 Aligned_cols=77 Identities=14% Similarity=0.082 Sum_probs=44.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC------------chHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN------------TDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~------------~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
||.++|+.|+++|++|.+.+|+ +++.+...+. ..+.-.+...+-.=+.++++++.++..
T Consensus 25 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~v~~~~~~-- 95 (278)
T 3sx2_A 25 QGRAHAVRLAADGADIIAVDLCDQIASVPYPLATPEELAATVKL-------VEDIGSRIVARQADVRDRESLSAALQA-- 95 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSCCTTCSSCCCCHHHHHHHHHH-------HHHHTCCEEEEECCTTCHHHHHHHHHH--
T ss_pred HHHHHHHHHHHCCCeEEEEecccccccccccccchHHHHHHHHH-------HHhcCCeEEEEeCCCCCHHHHHHHHHH--
Confidence 7999999999999999999987 4443333211 111111222233334566667766653
Q ss_pred cccccCCCCCEEEEcCCCC
Q psy764 70 GILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 70 ~l~~~l~~g~ivid~st~~ 88 (286)
+.+...+=+++|++..+.
T Consensus 96 -~~~~~g~id~lv~nAg~~ 113 (278)
T 3sx2_A 96 -GLDELGRLDIVVANAGIA 113 (278)
T ss_dssp -HHHHHCCCCEEEECCCCC
T ss_pred -HHHHcCCCCEEEECCCCC
Confidence 333333346777776543
|
| >3pgx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.85A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=90.73 E-value=0.35 Score=40.22 Aligned_cols=76 Identities=12% Similarity=0.065 Sum_probs=44.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcC-------------CchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK-------------NTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr-------------~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~ 68 (286)
||.++|+.|++.|++|.+.+| ++++.+.+.+. ..+.-..+..+..=+.++++++.++..
T Consensus 27 IG~a~a~~la~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~~~~~v~~~~~~- 98 (280)
T 3pgx_A 27 QGRSHAVRLAAEGADIIACDICAPVSASVTYAPASPEDLDETARL-------VEDQGRKALTRVLDVRDDAALRELVAD- 98 (280)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSCCCTTCCSCCCCHHHHHHHHHH-------HHTTTCCEEEEECCTTCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHCCCEEEEEeccccccccccccccCHHHHHHHHHH-------HHhcCCeEEEEEcCCCCHHHHHHHHHH-
Confidence 799999999999999999998 44444443321 000001222333345666677776653
Q ss_pred ccccccCCCCCEEEEcCCC
Q psy764 69 DGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~ 87 (286)
+.+...+=+++|++...
T Consensus 99 --~~~~~g~id~lvnnAg~ 115 (280)
T 3pgx_A 99 --GMEQFGRLDVVVANAGV 115 (280)
T ss_dssp --HHHHHCCCCEEEECCCC
T ss_pred --HHHHcCCCCEEEECCCC
Confidence 33333334577776554
|
| >2pd6_A Estradiol 17-beta-dehydrogenase 8; short-chain dehydrogenase/reductase, steroid metabolism, LIP metabolism, structural genomics; HET: NAD; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.71 E-value=0.46 Score=38.89 Aligned_cols=81 Identities=10% Similarity=0.006 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh--hcCcEEEEecCChhHHHHHhcCCccccccCCCC-
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA--SGAEFIISMLPASQDVLDAYDGSDGILKHAKPG- 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~--~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g- 78 (286)
||..+++.|++.|++|++.+|++++.+.+.+. +.... ..+.. .+..++..=+.++.+++.++.. +.+...+=
T Consensus 19 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~i~ 93 (264)
T 2pd6_A 19 IGRAVSVRLAGEGATVAACDLDRAAAQETVRL-LGGPG-SKEGPPRGNHAAFQADVSEARAARCLLEQ---VQACFSRPP 93 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT-C-------------CCEEEECCTTSHHHHHHHHHH---HHHHHSSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-HHhcC-ccccccCcceEEEEecCCCHHHHHHHHHH---HHHHhCCCC
Confidence 79999999999999999999998877666432 11000 00000 1222232334555666666543 33222222
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
++||++...
T Consensus 94 d~vi~~Ag~ 102 (264)
T 2pd6_A 94 SVVVSCAGI 102 (264)
T ss_dssp SEEEECCCC
T ss_pred eEEEECCCc
Confidence 667776554
|
| >4gwg_A 6-phosphogluconate dehydrogenase, decarboxylating; 6-phosphoglyconate dehydrogenase, NADP, oxido; HET: MES; 1.39A {Homo sapiens} PDB: 4gwk_A* 2jkv_A* 2pgd_A 1pgo_A* 1pgp_A* 1pgq_A* 1pgn_A | Back alignment and structure |
|---|
Probab=90.62 E-value=0.94 Score=41.11 Aligned_cols=119 Identities=11% Similarity=0.018 Sum_probs=81.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHccC-CCcccccccCC----CCCccccCCCCCC
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVK------LGMNAKLLSDVINTSS-GRCWSSEVYNP----VPGVLSNVPASNN 224 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gl~~~~~~~~~~~~~-~~s~~~~~~~~----~~~~~~~~~~~~~ 224 (286)
....+|.++|.+.+..+.+.+|.+.+.++ .++|...+.++-+.+. -+|++++.... -|.+ .+.+
T Consensus 317 ~~~~~~~~~~al~~~~i~~yaqGf~ll~~as~~~~w~l~~~~ia~iwr~GciIrs~~l~~i~~a~~~~~~l-~~ll---- 391 (484)
T 4gwg_A 317 KKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDAFDRNPEL-QNLL---- 391 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTSTTCTTCBHHHHHHHHHHHHCTTC-SCGG----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHccCceeHHHHHHHHHHHHHhCCCc-hhhh----
Confidence 46779999999999999999999887764 3599999999988774 57777654221 1111 1111
Q ss_pred CCCCcc--chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHh
Q psy764 225 YNGGFK--ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLK 283 (286)
Q Consensus 225 ~~~~f~--~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~ 283 (286)
++|.|. +.......+.+...+-+.|+|.|.+.++..+|..-.. +.-.+.+++..+
T Consensus 392 ~~~~f~~~~~~~~~~~r~vv~~a~~~gip~P~~s~al~y~~~~r~----~~lpanliqaqR 448 (484)
T 4gwg_A 392 LDDFFKSAVENCQDSWRRAVSTGVQAGIPMPCFTTALSFYDGYRH----EMLPASLIQAQR 448 (484)
T ss_dssp GSHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHTC----SCCTHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc----CCCHHHHHHHHH
Confidence 122232 3334556677999999999999999999999987622 333344666554
|
| >2wsb_A Galactitol dehydrogenase; oxidoreductase, SDR, rossmann fold, tagatose; HET: NAD; 1.25A {Rhodobacter sphaeroides} PDB: 2wdz_A* 3lqf_A* | Back alignment and structure |
|---|
Probab=90.48 E-value=0.37 Score=39.19 Aligned_cols=72 Identities=18% Similarity=0.215 Sum_probs=44.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcC-cEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGA-EFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~a-divi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|++.|++|++.+|++++.+.+.+. .-.+. .++..=+.++.+++.++.. +.. ..+=++
T Consensus 23 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~~D~~~~~~~~~~~~~---~~~-~~~id~ 88 (254)
T 2wsb_A 23 IGLEICRAFAASGARLILIDREAAALDRAAQE----------LGAAVAARIVADVTDAEAMTAAAAE---AEA-VAPVSI 88 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HGGGEEEEEECCTTCHHHHHHHHHH---HHH-HSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH----------hcccceeEEEEecCCHHHHHHHHHH---HHh-hCCCcE
Confidence 79999999999999999999998876655322 00111 2222334555666666543 222 223366
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 89 li~~Ag~ 95 (254)
T 2wsb_A 89 LVNSAGI 95 (254)
T ss_dssp EEECCCC
T ss_pred EEECCcc
Confidence 7776543
|
| >3e03_A Short chain dehydrogenase; structural genomics, PSI-2, protein structure initiative, NEW YORK structural genomix research consortium; 1.69A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=90.45 E-value=0.04 Score=46.07 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=23.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA 26 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~ 26 (286)
||.++|+.|++.|++|.+.+|+.++
T Consensus 18 IG~aia~~la~~G~~V~~~~r~~~~ 42 (274)
T 3e03_A 18 IGLAIALRAARDGANVAIAAKSAVA 42 (274)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCSC
T ss_pred HHHHHHHHHHHCCCEEEEEeccchh
Confidence 7999999999999999999999764
|
| >1zem_A Xylitol dehydrogenase; rossmann fold, dinucleotide-binding domain, oxidoreductase; HET: NAD; 1.90A {Gluconobacter oxydans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.44 E-value=0.39 Score=39.53 Aligned_cols=76 Identities=12% Similarity=0.165 Sum_probs=45.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. +.+.-.+..++..=+.++.+++.++.. +.+...+=+++
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~l 88 (262)
T 1zem_A 19 IGLATALRLAEEGTAIALLDMNREALEKAEAS-------VREKGVEARSYVCDVTSEEAVIGTVDS---VVRDFGKIDFL 88 (262)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHTTTSCEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEecCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 79999999999999999999998876655321 000000112222234566666666553 33323333677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 89 v~nAg~ 94 (262)
T 1zem_A 89 FNNAGY 94 (262)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776544
|
| >1edo_A Beta-keto acyl carrier protein reductase; nucleotide fold, rossmann fold, oxidoreductase; HET: NAP; 2.30A {Brassica napus} SCOP: c.2.1.2 PDB: 2cdh_G | Back alignment and structure |
|---|
Probab=90.36 E-value=0.53 Score=38.01 Aligned_cols=76 Identities=16% Similarity=0.199 Sum_probs=45.3
Q ss_pred ccHHHHHHHHhCCCcEEE-EcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIV-YDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~-~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|++.|++|.+ .+|++++.+.+.+. ..+.-.+..++..=+.++.+++.++.. +.+...+=++
T Consensus 13 iG~~la~~l~~~G~~v~~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~ 82 (244)
T 1edo_A 13 IGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQ-------IEAYGGQAITFGGDVSKEADVEAMMKT---AIDAWGTIDV 82 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHHHTCEEEEEECCTTSHHHHHHHHHH---HHHHSSCCSE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-------HHhcCCcEEEEeCCCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 799999999999999998 58998776655321 111111122233334556666666653 3333333467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 83 li~~Ag~ 89 (244)
T 1edo_A 83 VVNNAGI 89 (244)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776554
|
| >3o38_A Short chain dehydrogenase; tuberculosis, ortholog from A non-pathogenic dehydrogenase, structural genomics; 1.95A {Mycobacterium smegmatis} | Back alignment and structure |
|---|
Probab=90.36 E-value=0.31 Score=40.16 Aligned_cols=76 Identities=12% Similarity=0.137 Sum_probs=47.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHH-hhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|+++|++|.+.+|+.++.+.+.+.- .+. -.+..++..=+.++++++.++.. +.+...+=++
T Consensus 35 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~l-------~~~~~~~~~~~~~Dl~~~~~v~~~~~~---~~~~~g~id~ 104 (266)
T 3o38_A 35 IGSTTARRALLEGADVVISDYHERRLGETRDQL-------ADLGLGRVEAVVCDVTSTEAVDALITQ---TVEKAGRLDV 104 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-------HTTCSSCEEEEECCTTCHHHHHHHHHH---HHHHHSCCCE
T ss_pred hHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHH-------HhcCCCceEEEEeCCCCHHHHHHHHHH---HHHHhCCCcE
Confidence 799999999999999999999988776654320 000 01223333345566677776653 3333334467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 105 li~~Ag~ 111 (266)
T 3o38_A 105 LVNNAGL 111 (266)
T ss_dssp EEECCCC
T ss_pred EEECCCc
Confidence 7776654
|
| >3ppi_A 3-hydroxyacyl-COA dehydrogenase type-2; ssgcid, dehydrogenas mycobacterium avium, structural genomics; 2.00A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=90.35 E-value=0.28 Score=40.86 Aligned_cols=55 Identities=24% Similarity=0.349 Sum_probs=38.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
||.++++.|++.|++|++.+|++++.+.+.+.- -.+..++..=+.+.++++.++.
T Consensus 42 IG~aia~~l~~~G~~Vi~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~~~~~v~~~~~ 96 (281)
T 3ppi_A 42 LGEATVRRLHADGLGVVIADLAAEKGKALADEL----------GNRAEFVSTNVTSEDSVLAAIE 96 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------CTTEEEEECCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHh----------CCceEEEEcCCCCHHHHHHHHH
Confidence 799999999999999999999998877665420 0122233333566666777665
|
| >3sc4_A Short chain dehydrogenase (A0QTM2 homolog); ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.50A {Mycobacterium thermoresistibile} | Back alignment and structure |
|---|
Probab=90.35 E-value=0.035 Score=46.76 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=23.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA 26 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~ 26 (286)
||.++|+.|+++|++|.+.+|+.++
T Consensus 21 IG~aia~~l~~~G~~V~~~~r~~~~ 45 (285)
T 3sc4_A 21 IGLAIAKRVAADGANVALVAKSAEP 45 (285)
T ss_dssp HHHHHHHHHHTTTCEEEEEESCCSC
T ss_pred HHHHHHHHHHHCCCEEEEEECChhh
Confidence 7999999999999999999999763
|
| >1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=90.29 E-value=0.24 Score=42.32 Aligned_cols=79 Identities=15% Similarity=0.138 Sum_probs=51.1
Q ss_pred ccHHHHHHHHh-C-CCc-EEEEcCCchH-HHHHH-HcCCcc-cCCHHHHhh-----cCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQF-Q-GHD-VIVYDKNTDA-SQTLA-KEGANM-ALSLSTLAS-----GAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~-~-G~~-V~~~dr~~~~-~~~l~-~~g~~~-~~s~~e~~~-----~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||+.+++.|.+ . +.+ +.++|+++++ ...+. ..|... .++.+++++ +.|+||.|+|.....+.+..
T Consensus 15 iG~~~~~~l~~~~~~~elvav~d~~~~~~~~~~a~~~g~~~~~~~~e~ll~~~~~~~iDvV~~atp~~~h~~~a~~---- 90 (312)
T 1nvm_B 15 IGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHVQNEAL---- 90 (312)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHHHHHHHH----
T ss_pred HHHHHHHHHHhhCcCeEEEEEEeCChhhhHHHHHHHcCCCcccCCHHHHHhccCCCCCcEEEECCChHHHHHHHHH----
Confidence 67888888865 3 444 4567999887 55554 447653 456677754 57999999995433333322
Q ss_pred ccccCCC--CCEEEEcCCC
Q psy764 71 ILKHAKP--GVIVIDSSTV 87 (286)
Q Consensus 71 l~~~l~~--g~ivid~st~ 87 (286)
.+.. |+.|++.+..
T Consensus 91 ---al~a~~Gk~Vi~ekp~ 106 (312)
T 1nvm_B 91 ---LRQAKPGIRLIDLTPA 106 (312)
T ss_dssp ---HHHHCTTCEEEECSTT
T ss_pred ---HHHhCCCCEEEEcCcc
Confidence 2344 8889887654
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=90.29 E-value=0.76 Score=40.24 Aligned_cols=89 Identities=11% Similarity=0.156 Sum_probs=57.2
Q ss_pred HHHHHHHhCCCcEEEE-------cCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 5 LKLFFLQFQGHDVIVY-------DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~-------dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
.-.+.|.+.||+|.+- .-+. +...+.|+++.++.+++.+++|+| +.+..+.. ++ ...+.+
T Consensus 21 ~~v~~L~~~G~~V~ve~~ag~~~~f~d---~~y~~aGa~i~~~~~~~~~~adii-~~vk~p~~-~e--------~~~l~~ 87 (377)
T 2vhw_A 21 AGVAELTRRGHEVLIQAGAGEGSAITD---ADFKAAGAQLVGTADQVWADADLL-LKVKEPIA-AE--------YGRLRH 87 (377)
T ss_dssp HHHHHHHHTTCEEEEETTTTGGGTCCH---HHHHHHTCEEESCHHHHHHHCSEE-ECSSCCCG-GG--------GGGCCT
T ss_pred HHHHHHHhCCCEEEEeCCCCcCCCCCH---HHHHHCCCEEecCHHHHhccCCEE-EEeCCCCh-HH--------HhhcCC
Confidence 3457788999999872 2222 345567999999999999999976 56664421 11 223456
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
|++++-.+. +.....+.+.+.++|+..++
T Consensus 88 ~~~l~~~~~--~~~~~~~l~~l~~~gi~~ia 116 (377)
T 2vhw_A 88 GQILFTFLH--LAASRACTDALLDSGTTSIA 116 (377)
T ss_dssp TCEEEECCC--GGGCHHHHHHHHHHTCEEEE
T ss_pred CCEEEEEec--ccCCHHHHHHHHHcCCeEEE
Confidence 777775433 33345556666777777763
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=90.26 E-value=1.2 Score=38.80 Aligned_cols=64 Identities=14% Similarity=0.112 Sum_probs=41.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCccc-------CCHHHHhh-----cCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMA-------LSLSTLAS-----GAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-------~s~~e~~~-----~adivi~~v~~~~~~~~v~ 65 (286)
||...+..+...|. +|++.++++++.+.+.+.|+... .+..+.++ ..|+||-|+..+..++..+
T Consensus 205 vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~~lGa~~vi~~~~~~~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~ 281 (378)
T 3uko_A 205 VGLAVAEGAKTAGASRIIGIDIDSKKYETAKKFGVNEFVNPKDHDKPIQEVIVDLTDGGVDYSFECIGNVSVMRAAL 281 (378)
T ss_dssp HHHHHHHHHHHHTCSCEEEECSCTTHHHHHHTTTCCEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCcEEEccccCchhHHHHHHHhcCCCCCEEEECCCCHHHHHHHH
Confidence 46666666666788 79999999999988877786432 22333322 3677777777654444444
|
| >1vl8_A Gluconate 5-dehydrogenase; TM0441, structural genomics, JCSG structure initiative, PSI, joint center for structural GENO oxidoreductase; HET: NAP; 2.07A {Thermotoga maritima} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.25 E-value=0.49 Score=39.11 Aligned_cols=75 Identities=15% Similarity=0.146 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. +.+. ...++.+ .=+.++.+++.++.. +.+...+=+
T Consensus 33 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------l~~~-~~~~~~~~~~Dl~~~~~v~~~~~~---~~~~~g~iD 101 (267)
T 1vl8_A 33 LGFGIAQGLAEAGCSVVVASRNLEEASEAAQK-------LTEK-YGVETMAFRCDVSNYEEVKKLLEA---VKEKFGKLD 101 (267)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHH-HCCCEEEEECCTTCHHHHHHHHHH---HHHHHSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHHh-cCCeEEEEEcCCCCHHHHHHHHHH---HHHHcCCCC
Confidence 79999999999999999999998876554321 0000 0122222 234556666666653 333232335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++...
T Consensus 102 ~lvnnAg~ 109 (267)
T 1vl8_A 102 TVVNAAGI 109 (267)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 67776543
|
| >3k31_A Enoyl-(acyl-carrier-protein) reductase; ssgcid, NIH, niaid, SBRI, UW, decode, eonyl-(acyl-carrier-PR reductase, NAD, oxidoreductase; HET: NAD; 1.80A {Anaplasma phagocytophilum} PDB: 3k2e_A* | Back alignment and structure |
|---|
Probab=90.24 E-value=0.71 Score=38.77 Aligned_cols=76 Identities=7% Similarity=-0.053 Sum_probs=46.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|++|.+.+|+.+..+.+.+. .+.......+..=+.++.+++.++.. +.+...+=+++
T Consensus 44 IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 112 (296)
T 3k31_A 44 LAWGIAKAVCAQGAEVALTYLSETFKKRVDPL--------AESLGVKLTVPCDVSDAESVDNMFKV---LAEEWGSLDFV 112 (296)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH--------HHHHTCCEEEECCTTCHHHHHHHHHH---HHHHHSCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH--------HHhcCCeEEEEcCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 78999999999999999999997654433221 00111222333335666777777654 43333344678
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|++..+.
T Consensus 113 VnnAG~~ 119 (296)
T 3k31_A 113 VHAVAFS 119 (296)
T ss_dssp EECCCCC
T ss_pred EECCCcC
Confidence 8776654
|
| >1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.19 E-value=0.45 Score=40.07 Aligned_cols=76 Identities=11% Similarity=0.136 Sum_probs=45.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh---cCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS---GAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~---~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++++.|++.|++|.+.+|++++.+.+.+. +.+.-. +..++..=+.++.+++.++.. +.+...+=
T Consensus 38 IG~aia~~L~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~i 107 (297)
T 1xhl_A 38 IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQ-------ILKAGVPAEKINAVVADVTEASGQDDIINT---TLAKFGKI 107 (297)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCGGGEEEEECCTTSHHHHHHHHHH---HHHHHSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCCCceEEEEecCCCCHHHHHHHHHH---HHHhcCCC
Confidence 79999999999999999999998876655321 000000 122233334566666666543 32222233
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
+++|++...
T Consensus 108 D~lvnnAG~ 116 (297)
T 1xhl_A 108 DILVNNAGA 116 (297)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCc
Confidence 567776543
|
| >2pnf_A 3-oxoacyl-[acyl-carrier-protein] reductase; short chain oxidoreductase, rossmann fold, oxidoreductase; HET: 1PE MES; 1.80A {Aquifex aeolicus} PDB: 2p68_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=0.61 Score=37.68 Aligned_cols=75 Identities=16% Similarity=0.193 Sum_probs=45.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|+++|++|.+.+|++++.+.+.+. +.+. ...++.+ .=+.++.+++.++.. +.+...+=+
T Consensus 19 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~-~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~~d 87 (248)
T 2pnf_A 19 IGRAIAEKLASAGSTVIITGTSGERAKAVAEE-------IANK-YGVKAHGVEMNLLSEESINKAFEE---IYNLVDGID 87 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH-------HHHH-HCCCEEEEECCTTCHHHHHHHHHH---HHHHSSCCS
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHHH-------HHhh-cCCceEEEEccCCCHHHHHHHHHH---HHHhcCCCC
Confidence 79999999999999999999998876654321 0000 0122222 234556666666543 333333346
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
+||++...
T Consensus 88 ~vi~~Ag~ 95 (248)
T 2pnf_A 88 ILVNNAGI 95 (248)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 77776654
|
| >1cyd_A Carbonyl reductase; short-chain dehydrogenase, oxidoreductase; HET: NAP; 1.80A {Mus musculus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=90.16 E-value=1.1 Score=36.04 Aligned_cols=68 Identities=21% Similarity=0.239 Sum_probs=44.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|++++.+.+.+.. .+.+++..=+.++.+++.++.. ..+=++|
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~-------~~~id~v 80 (244)
T 1cyd_A 19 IGRDTVKALHASGAKVVAVTRTNSDLVSLAKEC-----------PGIEPVCVDLGDWDATEKALGG-------IGPVDLL 80 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----------TTCEEEECCTTCHHHHHHHHTT-------CCCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhc-----------cCCCcEEecCCCHHHHHHHHHH-------cCCCCEE
Confidence 799999999999999999999988776654421 1223333334555566666542 1223577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 81 i~~Ag~ 86 (244)
T 1cyd_A 81 VNNAAL 86 (244)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 776653
|
| >5nul_A Flavodoxin; electron transport, flavoprotein, FMN; HET: FMN; 1.60A {Clostridium beijerinckii} SCOP: c.23.5.1 PDB: 2flv_A* 2fvx_A* 1fld_A* 3nll_A* 1fvx_A* 1fla_A* 4nll_A* 5nll_A* 2fox_A* 5ull_A* 2fdx_A* 2fax_A* 6nul_A* 1fln_A* 4nul_A* | Back alignment and structure |
|---|
Probab=90.12 E-value=2.3 Score=30.96 Aligned_cols=109 Identities=12% Similarity=0.056 Sum_probs=62.5
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCC------hh-HHHHHhcCCccccccCC
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPA------SQ-DVLDAYDGSDGILKHAK 76 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~------~~-~~~~v~~~~~~l~~~l~ 76 (286)
..++..|.+.|++|.++|.+... +. -+.++|.|++..|+ |. .++..+.. +... .
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~~--------------~~-~l~~~d~iiig~pty~~g~~p~~~~~~fl~~---l~~~-l 77 (138)
T 5nul_A 17 ELIAKGIIESGKDVNTINVSDVN--------------ID-ELLNEDILILGCSAMTDEVLEESEFEPFIEE---ISTK-I 77 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGCC--------------HH-HHTTCSEEEEEECCBTTTBCCTTTHHHHHHH---HGGG-C
T ss_pred HHHHHHHHHCCCeEEEEEhhhCC--------------HH-HHhhCCEEEEEcCccCCCCCChHHHHHHHHH---HHhh-c
Confidence 45666667777777777654321 12 34678999999885 22 46666653 3222 3
Q ss_pred CCCEEEEcCC---CCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC-CHhhHHHHHHHHHHhc
Q psy764 77 PGVIVIDSST---VDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG-DKSSLEKAKPILKCMG 145 (286)
Q Consensus 77 ~g~ivid~st---~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg-~~~~~~~~~~ll~~~g 145 (286)
+++.+.-.+| ........+.+.+.+.|...+..| ..+-+. +++. ++++++-+.+.
T Consensus 78 ~~k~~~~f~t~g~~~~~a~~~l~~~l~~~G~~~v~~~-------------~~~~~~p~~~d-~~~~~~~~~l~ 136 (138)
T 5nul_A 78 SGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVETP-------------LIVQNEPDEAE-QDCIEFGKKIA 136 (138)
T ss_dssp TTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSCC-------------EEEESSCGGGH-HHHHHHHHHHH
T ss_pred CCCEEEEEEecCCCCChHHHHHHHHHHHCCCEEECCc-------------eEEecCCCHHH-HHHHHHHHHHh
Confidence 4544333222 224567788888988888777422 112222 3455 77776666553
|
| >2cfc_A 2-(R)-hydroxypropyl-COM dehydrogenase; NAD, oxidoreductase; HET: NAD KPC; 1.8A {Xanthobacter autotrophicus} | Back alignment and structure |
|---|
Probab=90.10 E-value=0.44 Score=38.66 Aligned_cols=77 Identities=10% Similarity=0.046 Sum_probs=45.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+.-.... -.+..++..=+.++++++.++.. +.+...+=+++
T Consensus 14 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~------~~~~~~~~~D~~~~~~~~~~~~~---~~~~~~~id~l 84 (250)
T 2cfc_A 14 NGLAIATRFLARGDRVAALDLSAETLEETARTHWHAY------ADKVLRVRADVADEGDVNAAIAA---TMEQFGAIDVL 84 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHSTTT------GGGEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhc------CCcEEEEEecCCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 6999999999999999999999887766543200000 01222333334556666666543 33223233677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 85 i~~Ag~ 90 (250)
T 2cfc_A 85 VNNAGI 90 (250)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776543
|
| >3oid_A Enoyl-[acyl-carrier-protein] reductase [NADPH]; fatty acid synthesis, enoyl-ACP reductases, FABL, rossmann-L NADPH binding, oxidoreductase; HET: TCL NDP; 1.80A {Bacillus subtilis} PDB: 3oic_A* | Back alignment and structure |
|---|
Probab=90.09 E-value=0.46 Score=39.06 Aligned_cols=75 Identities=9% Similarity=0.167 Sum_probs=45.7
Q ss_pred ccHHHHHHHHhCCCcEEEE-cCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVY-DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~-dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++++.|+++|++|.+. +|++++.+.+.+. ..+.-.++.++-.=+.++++++.++.. +.+...+=++
T Consensus 16 IG~aia~~l~~~G~~vv~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id~ 85 (258)
T 3oid_A 16 VGKAAAIRLAENGYNIVINYARSKKAALETAEE-------IEKLGVKVLVVKANVGQPAKIKEMFQQ---IDETFGRLDV 85 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHTTTCCEEEEECCTTCHHHHHHHHHH---HHHHHSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 7999999999999999885 9998877665432 000001122233335666677776653 3333333467
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
+|++..
T Consensus 86 lv~nAg 91 (258)
T 3oid_A 86 FVNNAA 91 (258)
T ss_dssp EEECCC
T ss_pred EEECCC
Confidence 777654
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=90.08 E-value=0.71 Score=39.59 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=29.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN 36 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~ 36 (286)
||...++.+...|.+|++.++++++.+.+.+.|+.
T Consensus 176 vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~~lGa~ 210 (339)
T 1rjw_A 176 LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGAD 210 (339)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHCCCC
Confidence 67888888888899999999999998888777753
|
| >2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A* | Back alignment and structure |
|---|
Probab=90.05 E-value=0.43 Score=39.06 Aligned_cols=73 Identities=15% Similarity=0.129 Sum_probs=44.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|++.+|++++.+.+.+. .-.+..++-.=+.++++++.++.. +.+...+=+++
T Consensus 24 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~----------~~~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id~l 90 (265)
T 2o23_A 24 LGLATAERLVGQGASAVLLDLPNSGGEAQAKK----------LGNNCVFAPADVTSEKDVQTALAL---AKGKFGRVDVA 90 (265)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSSHHHHHHH----------HCTTEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHhHHHHHHH----------hCCceEEEEcCCCCHHHHHHHHHH---HHHHCCCCCEE
Confidence 69999999999999999999998776655332 001122233334555666666543 32222233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 91 i~~Ag~ 96 (265)
T 2o23_A 91 VNCAGI 96 (265)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 776543
|
| >1o6z_A MDH, malate dehydrogenase; halophilic, ION-binding, protein-solvent interaction, oxidoreductase; HET: NAD; 1.95A {Haloarcula marismortui} SCOP: c.2.1.5 d.162.1.1 PDB: 1gt2_A* 2x0r_A* 2j5k_A 2j5q_A 2j5r_A 1d3a_A 1hlp_A* 2hlp_A | Back alignment and structure |
|---|
Probab=89.94 E-value=0.92 Score=38.42 Aligned_cols=57 Identities=7% Similarity=0.123 Sum_probs=39.3
Q ss_pred ccHHHHHHHHhCCC--cEEEEcC--CchHHHH----HHHc-----CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDK--NTDASQT----LAKE-----GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr--~~~~~~~----l~~~-----g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
+|++++..|+..|+ ++.++|+ ++++.+. +... ..++..+..++++++|+||++...+
T Consensus 12 vG~~l~~~L~~~~~~~el~L~Di~~~~~~~~~~~~dl~~~~~~~~~~~v~~~~~~a~~~aDvVi~~ag~~ 81 (303)
T 1o6z_A 12 VGAAAGYNIALRDIADEVVFVDIPDKEDDTVGQAADTNHGIAYDSNTRVRQGGYEDTAGSDVVVITAGIP 81 (303)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECCGGGHHHHHHHHHHHHHHHTTTCCCEEEECCGGGGTTCSEEEECCCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEcCCCChhhHHHHHHHHHHHHhhCCCcEEEeCCHHHhCCCCEEEEcCCCC
Confidence 68999999988886 6889999 8766432 2211 1222223367789999999998643
|
| >1xg5_A ARPG836; short chain dehydrogenase, human, SGC, structural genomics, structural genomics consortium, oxidoreductase; HET: NAP; 1.53A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.93 E-value=0.99 Score=37.34 Aligned_cols=30 Identities=23% Similarity=0.167 Sum_probs=26.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|++.|++|++.+|++++.+.+.
T Consensus 44 IG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 73 (279)
T 1xg5_A 44 IGAAVARALVQQGLKVVGCARTVGNIEELA 73 (279)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECChHHHHHHH
Confidence 799999999999999999999988766553
|
| >3afn_B Carbonyl reductase; alpha/beta/alpha, rossmann-fold, oxidoreductase; HET: NAP; 1.63A {Sphingomonas SP} PDB: 3afm_A* | Back alignment and structure |
|---|
Probab=89.92 E-value=0.41 Score=38.97 Aligned_cols=76 Identities=12% Similarity=0.086 Sum_probs=44.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC-chHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN-TDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~-~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|+++|++|.+.+|+ +++.+.+.+. +.+.-.+..++..=+.++++++.++.. +.+...+=++
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~ 88 (258)
T 3afn_B 19 IGLATARLFARAGAKVGLHGRKAPANIDETIAS-------MRADGGDAAFFAADLATSEACQQLVDE---FVAKFGGIDV 88 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCTTHHHHHHH-------HHHTTCEEEEEECCTTSHHHHHHHHHH---HHHHHSSCSE
T ss_pred HHHHHHHHHHHCCCEEEEECCCchhhHHHHHHH-------HHhcCCceEEEECCCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 7999999999999999999998 7766554321 000001222333334556666666543 3222223367
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
||++...
T Consensus 89 vi~~Ag~ 95 (258)
T 3afn_B 89 LINNAGG 95 (258)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776553
|
| >1w6u_A 2,4-dienoyl-COA reductase, mitochondrial precursor; short chain dehydrogenase, beta- oxidation, NADP, oxidoreductase; HET: HXC NAP; 1.75A {Homo sapiens} SCOP: c.2.1.2 PDB: 1w73_A* 1w8d_A* | Back alignment and structure |
|---|
Probab=89.91 E-value=0.62 Score=39.01 Aligned_cols=76 Identities=16% Similarity=0.175 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHH-hhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|+++|++|++.+|++++.+.+.+. +.+. -.+..++-.=+.++.+++.++.. +.+...+=++
T Consensus 38 iG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~Dl~~~~~~~~~~~~---~~~~~g~id~ 107 (302)
T 1w6u_A 38 LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQ-------ISSQTGNKVHAIQCDVRDPDMVQNTVSE---LIKVAGHPNI 107 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHHSSCEEEEECCTTCHHHHHHHHHH---HHHHTCSCSE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHHhcCCceEEEEeCCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999999999998876654321 1111 01122233334556667666653 3333333467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 108 li~~Ag~ 114 (302)
T 1w6u_A 108 VINNAAG 114 (302)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7777653
|
| >3do5_A HOM, homoserine dehydrogenase; NP_069768.1, putative homoserine dehydrogenase, structural G joint center for structural genomics, JCSG; 2.20A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=89.86 E-value=0.69 Score=39.73 Aligned_cols=99 Identities=18% Similarity=0.155 Sum_probs=60.0
Q ss_pred ccHHHHHHHHhC---------CCcE-EEEcCCchHHH-----H-HHH--cCCcccC--CHHHHhh--cCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQ---------GHDV-IVYDKNTDASQ-----T-LAK--EGANMAL--SLSTLAS--GAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~---------G~~V-~~~dr~~~~~~-----~-l~~--~g~~~~~--s~~e~~~--~adivi~~v~~~~ 59 (286)
||+.+++.|.++ +.+| .++|+++++.+ . +.. .....++ ++.++++ +.|+|+.|.|+..
T Consensus 13 VG~~~~~~l~~~~~~l~~~g~~~~lvaV~d~~~~~~~~id~~~~~~~~~~~~~~~~~~d~~~ll~~~~iDvVv~~tp~~~ 92 (327)
T 3do5_A 13 VGQGVAELLIRKREEIEKAIGEFKVTAVADSKSSISGDFSLVEALRMKRETGMLRDDAKAIEVVRSADYDVLIEASVTRV 92 (327)
T ss_dssp HHHHHHHHHHHTHHHHHHHHCCEEEEEEECSSCEEESSCCHHHHHHHHHHHSSCSBCCCHHHHHHHSCCSEEEECCCCC-
T ss_pred HHHHHHHHHHhhHHHHHhcCCCEEEEEEEeCChHhccccCHHHHHhhhccCccccCCCCHHHHhcCCCCCEEEECCCCcc
Confidence 688888888765 4454 45588865432 1 211 1234444 8999986 4899999999753
Q ss_pred H---HHHHhcCCccccccCCCCCEEEEcCCCCch--HHHHHHHHHHhcCCceE
Q psy764 60 D---VLDAYDGSDGILKHAKPGVIVIDSSTVDPQ--VPQTLSNLAREKQITFL 107 (286)
Q Consensus 60 ~---~~~v~~~~~~l~~~l~~g~ivid~st~~p~--~~~~~~~~~~~~g~~~~ 107 (286)
. ..+. ....+..|+-|+-.+. .|- ..+++.+..+++|..++
T Consensus 93 h~~~a~~~------~~~aL~aGkhVv~~NK-kpla~~~~eL~~~A~~~g~~~~ 138 (327)
T 3do5_A 93 DGGEGVNY------IREALKRGKHVVTSNK-GPLVAEFHGLMSLAERNGVRLM 138 (327)
T ss_dssp ---CHHHH------HHHHHTTTCEEEECCS-HHHHHHHHHHHHHHHHTTCCEE
T ss_pred cchhHHHH------HHHHHHCCCeEEecCc-hhhHHHHHHHHHHHHhhCCcEE
Confidence 2 1222 2345677888885544 332 35566666777777655
|
| >2gdz_A NAD+-dependent 15-hydroxyprostaglandin dehydrogen; dehydrogenase, structural genomics, SH dehydrogenase/reductase, inflammation; HET: NAD; 1.65A {Homo sapiens} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.77 E-value=0.45 Score=39.18 Aligned_cols=78 Identities=18% Similarity=0.172 Sum_probs=46.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. ... .. . .+...+..=+.++++++.++.. +.+...+=++
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~-~~-~----~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id~ 89 (267)
T 2gdz_A 19 IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQ-FE-P----QKTLFIQCDVADQQQLRDTFRK---VVDHFGRLDI 89 (267)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTT-SC-G----GGEEEEECCTTSHHHHHHHHHH---HHHHHSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhh-cC-C----CceEEEecCCCCHHHHHHHHHH---HHHHcCCCCE
Confidence 79999999999999999999998876554321 100 00 0 1122233334566667776653 3333333467
Q ss_pred EEEcCCCC
Q psy764 81 VIDSSTVD 88 (286)
Q Consensus 81 vid~st~~ 88 (286)
+|++....
T Consensus 90 lv~~Ag~~ 97 (267)
T 2gdz_A 90 LVNNAGVN 97 (267)
T ss_dssp EEECCCCC
T ss_pred EEECCCCC
Confidence 77776543
|
| >3m2p_A UDP-N-acetylglucosamine 4-epimerase; SGXNY, 11155J, isomerase, structural genomics, PSI-2, protein structure initiative; HET: UDP; 2.95A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=89.73 E-value=0.21 Score=42.11 Aligned_cols=53 Identities=6% Similarity=0.122 Sum_probs=37.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----CCcccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----GANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~~~~~s~~e~~~~adivi~~v~ 56 (286)
+|+.+++.|+++|++|++.+|++.+.+ +... .+. .+++.++++++|+||-+..
T Consensus 14 iG~~l~~~L~~~g~~V~~~~r~~~~~~-~~~~~~~~~Dl~-~~~~~~~~~~~d~Vih~a~ 71 (311)
T 3m2p_A 14 LGQYVVESIKNDGNTPIILTRSIGNKA-INDYEYRVSDYT-LEDLINQLNDVDAVVHLAA 71 (311)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCCC------CCEEEECCCC-HHHHHHHTTTCSEEEECCC
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCCccc-CCceEEEEcccc-HHHHHHhhcCCCEEEEccc
Confidence 799999999999999999999965544 3211 123 4456677889999998865
|
| >1xq1_A Putative tropinone reducatse; structural genomics, protein structure initiative, CESG, AT1 reductively methylated protein; 2.10A {Arabidopsis thaliana} SCOP: c.2.1.2 PDB: 2q45_A | Back alignment and structure |
|---|
Probab=89.70 E-value=0.48 Score=38.87 Aligned_cols=30 Identities=10% Similarity=-0.095 Sum_probs=26.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|++.|++|.+.+|++++.+.+.
T Consensus 26 iG~~la~~l~~~G~~V~~~~r~~~~~~~~~ 55 (266)
T 1xq1_A 26 IGHAIVEEFAGFGAVIHTCARNEYELNECL 55 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999988766543
|
| >1mxh_A Pteridine reductase 2; SDR topology, protein-substrate complex, oxidoreductase; HET: NAP DHF; 2.20A {Trypanosoma cruzi} SCOP: c.2.1.2 PDB: 1mxf_A* | Back alignment and structure |
|---|
Probab=89.68 E-value=0.6 Score=38.60 Aligned_cols=30 Identities=30% Similarity=0.287 Sum_probs=26.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcC-CchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK-NTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr-~~~~~~~l~ 31 (286)
||..+++.|++.|++|++.+| ++++.+.+.
T Consensus 23 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~ 53 (276)
T 1mxh_A 23 IGHSIAVRLHQQGFRVVVHYRHSEGAAQRLV 53 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCChHHHHHHH
Confidence 799999999999999999999 877766553
|
| >1qsg_A Enoyl-[acyl-carrier-protein] reductase; enoyl reductase, oxidoreductase; HET: GLC NAD TCL; 1.75A {Escherichia coli} SCOP: c.2.1.2 PDB: 1c14_A* 1i2z_A* 1i30_A* 1lx6_A* 1lxc_A* 1mfp_A* 2fhs_A 1qg6_A* 1dfg_A* 1dfh_A* 1d8a_A* 1dfi_A* 3pje_A* 3pjd_A* 3pjf_A* | Back alignment and structure |
|---|
Probab=89.67 E-value=0.69 Score=38.02 Aligned_cols=73 Identities=8% Similarity=-0.039 Sum_probs=44.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc---hHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT---DASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~---~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++++.|+++|++|++.+|++ +..+.+.+.. ....++..=+.++++++.++.. +.+...+=
T Consensus 23 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~-----------~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~i 88 (265)
T 1qsg_A 23 IAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL-----------GSDIVLQCDVAEDASIDTMFAE---LGKVWPKF 88 (265)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTTHHHHHHHHHHT-----------TCCCEEECCTTCHHHHHHHHHH---HHTTCSSE
T ss_pred HHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHHhc-----------CCcEEEEccCCCHHHHHHHHHH---HHHHcCCC
Confidence 78999999999999999999987 2333332211 1122333345666677776653 33333233
Q ss_pred CEEEEcCCCC
Q psy764 79 VIVIDSSTVD 88 (286)
Q Consensus 79 ~ivid~st~~ 88 (286)
+++|++....
T Consensus 89 D~lv~~Ag~~ 98 (265)
T 1qsg_A 89 DGFVHSIGFA 98 (265)
T ss_dssp EEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 6777776543
|
| >4imr_A 3-oxoacyl-(acyl-carrier-protein) reductase; oxidoreductase, nicotinamide adenine dinucleotide phosphate, structural genomics; HET: NAP; 1.96A {Agrobacterium fabrum} | Back alignment and structure |
|---|
Probab=89.67 E-value=0.47 Score=39.47 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=26.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||.++|+.|++.|++|.+.+|++++.+.+.
T Consensus 45 IG~aia~~la~~G~~V~~~~r~~~~~~~~~ 74 (275)
T 4imr_A 45 IGAAIAEGLAGAGAHVILHGVKPGSTAAVQ 74 (275)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTTTHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 799999999999999999999988766554
|
| >4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold, peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA; 1.84A {Homo sapiens} PDB: 4fc6_A* | Back alignment and structure |
|---|
Probab=89.66 E-value=0.47 Score=39.47 Aligned_cols=74 Identities=19% Similarity=0.172 Sum_probs=45.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++++.|+++|++|.+.+|+.++.+...+. ..+. ...++.+ .=+.++.+++.++.. +.+...+=+
T Consensus 39 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~-~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id 107 (277)
T 4fc7_A 39 IGFRIAEIFMRHGCHTVIASRSLPRVLTAARK-------LAGA-TGRRCLPLSMDVRAPPAVMAAVDQ---ALKEFGRID 107 (277)
T ss_dssp HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHH-------HHHH-HSSCEEEEECCTTCHHHHHHHHHH---HHHHHSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHHh-cCCcEEEEEcCCCCHHHHHHHHHH---HHHHcCCCC
Confidence 79999999999999999999998876554321 0110 1222332 235566667766653 333333446
Q ss_pred EEEEcCC
Q psy764 80 IVIDSST 86 (286)
Q Consensus 80 ivid~st 86 (286)
++|++..
T Consensus 108 ~lv~nAg 114 (277)
T 4fc7_A 108 ILINCAA 114 (277)
T ss_dssp EEEECCC
T ss_pred EEEECCc
Confidence 7777654
|
| >2p91_A Enoyl-[acyl-carrier-protein] reductase [NADH]; NADH-dependent enoyl-ACP reductase, FABI, aquifex A VF5, structural genomics, PSI; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.62 E-value=0.85 Score=37.95 Aligned_cols=73 Identities=10% Similarity=-0.011 Sum_probs=45.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch---HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD---ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~---~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||..+++.|++.|++|++.+|+++ ..+.+.+.. ....++..=+.++++++.++.. +.+...+=
T Consensus 35 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~-----------~~~~~~~~Dl~~~~~v~~~~~~---~~~~~g~i 100 (285)
T 2p91_A 35 IAYGIAKSFHREGAQLAFTYATPKLEKRVREIAKGF-----------GSDLVVKCDVSLDEDIKNLKKF---LEENWGSL 100 (285)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHHT-----------TCCCEEECCTTCHHHHHHHHHH---HHHHTSCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc-----------CCeEEEEcCCCCHHHHHHHHHH---HHHHcCCC
Confidence 789999999999999999999875 223332211 1123333445666677776653 33333334
Q ss_pred CEEEEcCCCC
Q psy764 79 VIVIDSSTVD 88 (286)
Q Consensus 79 ~ivid~st~~ 88 (286)
+++|++....
T Consensus 101 D~lv~~Ag~~ 110 (285)
T 2p91_A 101 DIIVHSIAYA 110 (285)
T ss_dssp CEEEECCCCC
T ss_pred CEEEECCCCC
Confidence 6777776543
|
| >4gkb_A 3-oxoacyl-[acyl-carrier protein] reductase; putative sugar dehydrogenase, enzyme function initiative, EF structural genomics; 1.50A {Burkholderia multivorans} PDB: 4glo_A* | Back alignment and structure |
|---|
Probab=89.59 E-value=0.62 Score=38.54 Aligned_cols=75 Identities=13% Similarity=0.079 Sum_probs=46.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|.+|.+.+|+.++.+.+.+ ..+.-.++..+-.=+.++.+++.++.. +.+...+=+++
T Consensus 19 IG~aia~~la~~Ga~Vv~~~r~~~~~~~~~~--------~~~~~~~~~~~~~Dv~~~~~v~~~v~~---~~~~~G~iDiL 87 (258)
T 4gkb_A 19 IGGAISMRLAEERAIPVVFARHAPDGAFLDA--------LAQRQPRATYLPVELQDDAQCRDAVAQ---TIATFGRLDGL 87 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCCHHHHHH--------HHHHCTTCEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHcCCEEEEEECCcccHHHHHH--------HHhcCCCEEEEEeecCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 7999999999999999999998765432211 111111222333335677777777654 44434444677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+...+
T Consensus 88 VNnAGi 93 (258)
T 4gkb_A 88 VNNAGV 93 (258)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776554
|
| >3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444} | Back alignment and structure |
|---|
Probab=89.55 E-value=0.46 Score=40.52 Aligned_cols=76 Identities=17% Similarity=0.077 Sum_probs=46.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. +...-. ...++.+=+.++.+++.++.. +.....+=+
T Consensus 20 IG~~la~~l~~~G~~Vv~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~~~Dl~~~~~v~~~~~~---~~~~~g~id 89 (319)
T 3ioy_A 20 VGIGLVRQLLNQGCKVAIADIRQDSIDKALAT-------LEAEGSGPEVMGVQLDVASREGFKMAADE---VEARFGPVS 89 (319)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHTCGGGEEEEECCTTCHHHHHHHHHH---HHHHTCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCCeEEEEECCCCCHHHHHHHHHH---HHHhCCCCC
Confidence 79999999999999999999999887665432 111001 222333335566667766653 333222335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++..+
T Consensus 90 ~lv~nAg~ 97 (319)
T 3ioy_A 90 ILCNNAGV 97 (319)
T ss_dssp EEEECCCC
T ss_pred EEEECCCc
Confidence 67766553
|
| >3tsc_A Putative oxidoreductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, nucleotide; HET: NAD; 2.05A {Mycobacterium avium subsp} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.54 E-value=0.58 Score=38.82 Aligned_cols=22 Identities=18% Similarity=0.218 Sum_probs=20.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN 23 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~ 23 (286)
||.++|+.|+++|++|.+.+|+
T Consensus 23 IG~a~a~~la~~G~~V~~~~r~ 44 (277)
T 3tsc_A 23 QGRAHAVRMAAEGADIIAVDIA 44 (277)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHcCCEEEEEecc
Confidence 7999999999999999999983
|
| >1spx_A Short-chain reductase family member (5L265); parallel beta-sheet of seven strands in the order 3214567; 2.10A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.50 E-value=0.38 Score=39.89 Aligned_cols=79 Identities=8% Similarity=0.109 Sum_probs=45.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|+++|++|.+.+|++++.+.+.+.-...... -.+..++..=+.++.+++.++.. +.+...+=+++
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~id~l 90 (278)
T 1spx_A 18 IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVS----EQNVNSVVADVTTDAGQDEILST---TLGKFGKLDIL 90 (278)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC----GGGEEEEECCTTSHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcccC----CCceeEEecccCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 799999999999999999999988776554320000000 01122233334556666666543 32222233577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 91 v~~Ag~ 96 (278)
T 1spx_A 91 VNNAGA 96 (278)
T ss_dssp EECCC-
T ss_pred EECCCC
Confidence 776554
|
| >1x1t_A D(-)-3-hydroxybutyrate dehydrogenase; NAD, NADH, SDR, short chain dehydrogenase, ketone BODY, beta hydroxybutyrate, oxidoreductase; HET: NAD; 1.52A {Pseudomonas fragi} SCOP: c.2.1.2 PDB: 1wmb_A* 2ztl_A* 2ztv_A* 2ztm_A* 2ztu_A* 2yz7_A 2zea_A* 3eew_A* 3vdq_A* 3vdr_A* | Back alignment and structure |
|---|
Probab=89.49 E-value=0.58 Score=38.39 Aligned_cols=75 Identities=16% Similarity=0.192 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||..+++.|++.|++|.+.+|++++ .+.+.+. +.+. ...++.++ =+.++++++.++.. +.+...+=
T Consensus 16 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-------~~~~-~~~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~i 84 (260)
T 1x1t_A 16 IGLGIATALAAQGADIVLNGFGDAAEIEKVRAG-------LAAQ-HGVKVLYDGADLSKGEAVRGLVDN---AVRQMGRI 84 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHH-------HHHH-HTSCEEEECCCTTSHHHHHHHHHH---HHHHHSCC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHH-------HHhc-cCCcEEEEECCCCCHHHHHHHHHH---HHHhcCCC
Confidence 7999999999999999999999876 5544321 0000 01223222 34455566666543 33322333
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
+++|++...
T Consensus 85 D~lv~~Ag~ 93 (260)
T 1x1t_A 85 DILVNNAGI 93 (260)
T ss_dssp SEEEECCCC
T ss_pred CEEEECCCC
Confidence 677776543
|
| >3grk_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, niaid, structural genomics, seattle structural genomics center for infectious disease; 2.35A {Brucella melitensis} PDB: 4eit_A* | Back alignment and structure |
|---|
Probab=89.44 E-value=0.89 Score=38.13 Aligned_cols=76 Identities=4% Similarity=-0.100 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|++|.+.+|+++..+.+.+. .+......++-.=+.++++++.++.. +.+...+=+++
T Consensus 45 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~iD~l 113 (293)
T 3grk_A 45 IAWGIAKAAREAGAELAFTYQGDALKKRVEPL--------AEELGAFVAGHCDVADAASIDAVFET---LEKKWGKLDFL 113 (293)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHHHH--------HHHHTCEEEEECCTTCHHHHHHHHHH---HHHHTSCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH--------HHhcCCceEEECCCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 79999999999999999999996543332211 11111222233335666777777653 43333344678
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|++..+.
T Consensus 114 VnnAG~~ 120 (293)
T 3grk_A 114 VHAIGFS 120 (293)
T ss_dssp EECCCCC
T ss_pred EECCccC
Confidence 8876654
|
| >2qq5_A DHRS1, dehydrogenase/reductase SDR family member 1; short-chain, structura genomics consortium, SGC, oxidoreductase; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.40 E-value=0.59 Score=38.33 Aligned_cols=74 Identities=12% Similarity=0.165 Sum_probs=44.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc-CCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH-AKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~-l~~g~i 80 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. +.+.-.+...+..=+.++.+++.++.. +.+. ..+=++
T Consensus 17 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~~g~id~ 86 (260)
T 2qq5_A 17 IGRGIALQLCKAGATVYITGRHLDTLRVVAQE-------AQSLGGQCVPVVCDSSQESEVRSLFEQ---VDREQQGRLDV 86 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHSSEEEEEECCTTSHHHHHHHHHH---HHHHHTTCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHHcCCceEEEECCCCCHHHHHHHHHH---HHHhcCCCceE
Confidence 79999999999999999999998876655321 111101122222334556666666543 3221 223367
Q ss_pred EEEcC
Q psy764 81 VIDSS 85 (286)
Q Consensus 81 vid~s 85 (286)
+|++.
T Consensus 87 lvnnA 91 (260)
T 2qq5_A 87 LVNNA 91 (260)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 77765
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=89.40 E-value=2 Score=37.30 Aligned_cols=35 Identities=20% Similarity=0.177 Sum_probs=27.5
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGAN 36 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~ 36 (286)
||...++.+...|. +|++.++++++.+.+.+.|+.
T Consensus 203 vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~ 238 (374)
T 2jhf_A 203 VGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGAT 238 (374)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence 46666776667888 799999999998888777754
|
| >2d1y_A Hypothetical protein TT0321; strucrtural genomics, thermus thermophilus HB8, structural genomics, NPPSFA; HET: NAD; 1.65A {Thermus thermophilus} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.39 E-value=0.64 Score=38.06 Aligned_cols=70 Identities=11% Similarity=0.142 Sum_probs=43.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++ +.+.+. +.. .++..=+.++++++.++.. +.+...+=+++
T Consensus 18 IG~~ia~~l~~~G~~V~~~~r~~~~-~~~~~~-----------~~~-~~~~~D~~~~~~~~~~~~~---~~~~~g~iD~l 81 (256)
T 2d1y_A 18 IGRAIAQAFAREGALVALCDLRPEG-KEVAEA-----------IGG-AFFQVDLEDERERVRFVEE---AAYALGRVDVL 81 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTH-HHHHHH-----------HTC-EEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCChhH-HHHHHH-----------hhC-CEEEeeCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 7999999999999999999999877 544321 012 2333335566666666543 32222233567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 82 v~~Ag~ 87 (256)
T 2d1y_A 82 VNNAAI 87 (256)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=2.1 Score=37.15 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=27.4
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGAN 36 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~ 36 (286)
||...+..+...|. +|++.++++++.+.+.+.|+.
T Consensus 207 vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 242 (376)
T 1e3i_A 207 VGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGAT 242 (376)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCS
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCc
Confidence 46666666667788 799999999998888777764
|
| >1xgk_A Nitrogen metabolite repression regulator NMRA; rossmann fold, transcriptional regulation, short chain dehyd reductase, NADP binding; 1.40A {Emericella nidulans} SCOP: c.2.1.2 PDB: 1k6x_A* 1k6j_A 1k6i_A* 1ti7_A* 2vus_A 2vut_A* 2vuu_A* | Back alignment and structure |
|---|
Probab=89.38 E-value=0.33 Score=42.01 Aligned_cols=56 Identities=14% Similarity=0.081 Sum_probs=40.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHH--HHHHHc-CC-----c-cc--CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDAS--QTLAKE-GA-----N-MA--LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~--~~l~~~-g~-----~-~~--~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|++.|++|++.+|++++. +.+.+. ++ . .. +++.++++++|+||.+...
T Consensus 17 iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~l~~~~~v~~v~~D~l~d~~~l~~~~~~~d~Vi~~a~~ 83 (352)
T 1xgk_A 17 QGASLIRVAAAVGHHVRAQVHSLKGLIAEELQAIPNVTLFQGPLLNNVPLMDTLFEGAHLAFINTTS 83 (352)
T ss_dssp HHHHHHHHHHHTTCCEEEEESCSCSHHHHHHHTSTTEEEEESCCTTCHHHHHHHHTTCSEEEECCCS
T ss_pred HHHHHHHHHHhCCCEEEEEECCCChhhHHHHhhcCCcEEEECCccCCHHHHHHHHhcCCEEEEcCCC
Confidence 68999999999999999999987764 444432 32 1 11 1255667899999977653
|
| >3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium} | Back alignment and structure |
|---|
Probab=89.31 E-value=1.3 Score=35.69 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=59.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-HHHHHHHcC-CcccC-C-HHHHhhcCcEEEEecCChhHHHHHhcC-Ccccc----
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-ASQTLAKEG-ANMAL-S-LSTLASGAEFIISMLPASQDVLDAYDG-SDGIL---- 72 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g-~~~~~-s-~~e~~~~adivi~~v~~~~~~~~v~~~-~~~l~---- 72 (286)
+|..-++.|.+.|.+|++++++.. .++.+.+.| +.... . ..+.+.++|+||.|..++..-..+... ..++.
T Consensus 42 va~~ka~~Ll~~GA~VtVvap~~~~~l~~l~~~~~i~~i~~~~~~~dL~~adLVIaAT~d~~~N~~I~~~ak~gi~VNvv 121 (223)
T 3dfz_A 42 IATRRIKGFLQEGAAITVVAPTVSAEINEWEAKGQLRVKRKKVGEEDLLNVFFIVVATNDQAVNKFVKQHIKNDQLVNMA 121 (223)
T ss_dssp HHHHHHHHHGGGCCCEEEECSSCCHHHHHHHHTTSCEEECSCCCGGGSSSCSEEEECCCCTHHHHHHHHHSCTTCEEEC-
T ss_pred HHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHcCCcEEEECCCCHhHhCCCCEEEECCCCHHHHHHHHHHHhCCCEEEEe
Confidence 567778889999999999987643 355665543 33221 1 134567899999998776433333221 01111
Q ss_pred ----------c-cCCCCCEEEEcCC--CCchHHHHHHHHHHh
Q psy764 73 ----------K-HAKPGVIVIDSST--VDPQVPQTLSNLARE 101 (286)
Q Consensus 73 ----------~-~l~~g~ivid~st--~~p~~~~~~~~~~~~ 101 (286)
+ ....|.+.|-.|| .+|..++.+.+.+++
T Consensus 122 D~p~~~~f~~Paiv~rg~l~iaIST~G~sP~la~~iR~~ie~ 163 (223)
T 3dfz_A 122 SSFSDGNIQIPAQFSRGRLSLAISTDGASPLLTKRIKEDLSS 163 (223)
T ss_dssp ----CCSEECCEEEEETTEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcccCeEEEeeEEEeCCEEEEEECCCCCcHHHHHHHHHHHH
Confidence 1 1233555555554 467777777777654
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=89.27 E-value=0.46 Score=40.94 Aligned_cols=78 Identities=17% Similarity=0.187 Sum_probs=52.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||...+..+...|.+|++.++++++.+.+.+.|+... .+..++.+..|+||-|+..+..+...+. .++++-.
T Consensus 188 vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~v~~~~~~~~~~~D~vid~~g~~~~~~~~~~-------~l~~~G~ 260 (348)
T 3two_A 188 LGSMAVKYAVAMGAEVSVFARNEHKKQDALSMGVKHFYTDPKQCKEELDFIISTIPTHYDLKDYLK-------LLTYNGD 260 (348)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSSTTHHHHHHTTCSEEESSGGGCCSCEEEEEECCCSCCCHHHHHT-------TEEEEEE
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHhcCCCeecCCHHHHhcCCCEEEECCCcHHHHHHHHH-------HHhcCCE
Confidence 5667777777789999999999999988888886432 3333333468888888887645555543 2344555
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
++..+.
T Consensus 261 iv~~G~ 266 (348)
T 3two_A 261 LALVGL 266 (348)
T ss_dssp EEECCC
T ss_pred EEEECC
Confidence 555544
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=89.25 E-value=2.2 Score=36.94 Aligned_cols=63 Identities=19% Similarity=0.211 Sum_probs=39.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCcccC-------CHHHHhh-----cCcEEEEecCChhHHHHH
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMAL-------SLSTLAS-----GAEFIISMLPASQDVLDA 64 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~-------s~~e~~~-----~adivi~~v~~~~~~~~v 64 (286)
+|...++.+...|. +|++.++++++.+.+.+.|+...- +..+.+. ..|+||-++..+..++..
T Consensus 204 vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~ 279 (374)
T 1cdo_A 204 VGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKVFGATDFVNPNDHSEPISQVLSKMTNGGVDFSLECVGNVGVMRNA 279 (374)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCCEEECGGGCSSCHHHHHHHHHTSCBSEEEECSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCCceEEeccccchhHHHHHHHHhCCCCCEEEECCCCHHHHHHH
Confidence 46666666667888 799999999998888777764221 2222222 356666666654344443
|
| >3s55_A Putative short-chain dehydrogenase/reductase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 2.10A {Mycobacterium abscessus} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.24 E-value=0.62 Score=38.69 Aligned_cols=23 Identities=17% Similarity=0.268 Sum_probs=21.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT 24 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~ 24 (286)
||.++|+.|++.|++|.+.+|++
T Consensus 22 IG~a~a~~l~~~G~~V~~~~r~~ 44 (281)
T 3s55_A 22 MGRSHAVALAEAGADIAICDRCE 44 (281)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCS
T ss_pred HHHHHHHHHHHCCCeEEEEeCCc
Confidence 79999999999999999999973
|
| >1yo6_A Putative carbonyl reductase sniffer; tyrosine-dependent oxidoreductase (SDR family), structural genomics, PSI; 2.60A {Caenorhabditis elegans} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.18 E-value=0.36 Score=38.97 Aligned_cols=73 Identities=10% Similarity=0.038 Sum_probs=45.7
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC--C
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK--P 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~--~ 77 (286)
||..+++.|++.| ++|++.+|++++.+.+.+. . -.+..++..=+.++.+++.++.. +.+... +
T Consensus 15 iG~~la~~l~~~g~~~~V~~~~r~~~~~~~l~~~-----~-----~~~~~~~~~D~~~~~~~~~~~~~---~~~~~g~~~ 81 (250)
T 1yo6_A 15 IGLGLVQQLVKDKNIRHIIATARDVEKATELKSI-----K-----DSRVHVLPLTVTCDKSLDTFVSK---VGEIVGSDG 81 (250)
T ss_dssp HHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTC-----C-----CTTEEEEECCTTCHHHHHHHHHH---HHHHHGGGC
T ss_pred HHHHHHHHHHhcCCCcEEEEEecCHHHHHHHHhc-----c-----CCceEEEEeecCCHHHHHHHHHH---HHHhcCCCC
Confidence 6899999999999 9999999998887666432 0 01223333344556666666543 322221 3
Q ss_pred CCEEEEcCCC
Q psy764 78 GVIVIDSSTV 87 (286)
Q Consensus 78 g~ivid~st~ 87 (286)
=+++|++...
T Consensus 82 id~li~~Ag~ 91 (250)
T 1yo6_A 82 LSLLINNAGV 91 (250)
T ss_dssp CCEEEECCCC
T ss_pred CcEEEECCcc
Confidence 3577776554
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=89.15 E-value=0.52 Score=38.73 Aligned_cols=78 Identities=6% Similarity=-0.010 Sum_probs=46.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|+.+..+.+.+.-... .. .+..++..=+.++++++.++.. +.+...+=+++
T Consensus 21 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~-~~-----~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~id~l 91 (266)
T 3oig_A 21 IAWGIARSLHEAGARLIFTYAGERLEKSVHELAGTL-DR-----NDSIILPCDVTNDAEIETCFAS---IKEQVGVIHGI 91 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHHHTS-SS-----CCCEEEECCCSSSHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEecCchHHHHHHHHHHHhc-CC-----CCceEEeCCCCCHHHHHHHHHH---HHHHhCCeeEE
Confidence 799999999999999999999865444333210000 00 1233344445666777777653 33333333567
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|++....
T Consensus 92 i~~Ag~~ 98 (266)
T 3oig_A 92 AHCIAFA 98 (266)
T ss_dssp EECCCCC
T ss_pred EEccccc
Confidence 7765543
|
| >1cf2_P Protein (glyceraldehyde-3-phosphate dehydrogenase); oxydoreductase, oxidoreductase; HET: NAP; 2.10A {Methanothermus fervidus} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=89.14 E-value=0.56 Score=40.47 Aligned_cols=80 Identities=16% Similarity=0.162 Sum_probs=50.0
Q ss_pred CccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHH-------------------cCCcccCCHHHHhhcCcEEEEecCChh
Q psy764 1 MISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAK-------------------EGANMALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 1 ~~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~-------------------~g~~~~~s~~e~~~~adivi~~v~~~~ 59 (286)
.||..+++.|.++ +++|. +.|++++....+.. .++.+..++.++..++|+||.|.|...
T Consensus 11 ~iG~~l~r~L~~~~~~elvav~d~~~~~~~~~~~~~g~~~~~~~~~~v~~~~~~~l~v~~~~~~~~~~vDvV~~atp~~~ 90 (337)
T 1cf2_P 11 TVGKRVADAIAQQDDMKVIGVSKTRPDFEARMALKKGYDLYVAIPERVKLFEKAGIEVAGTVDDMLDEADIVIDCTPEGI 90 (337)
T ss_dssp TTHHHHHHHHHTSSSEEEEEEEESSCSHHHHHHHHTTCCEEESSGGGHHHHHHTTCCCCEEHHHHHHTCSEEEECCSTTH
T ss_pred HHHHHHHHHHHcCCCcEEEEEEcCChhHHHHhcCCcchhhccccccceeeecCCceEEcCCHHHHhcCCCEEEECCCchh
Confidence 3789999998874 45654 45777554433322 233333467777789999999999754
Q ss_pred HHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 60 DVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 60 ~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
. .+... .++..|+.||+.+..
T Consensus 91 ~-~~~a~------~~l~aG~~VId~sp~ 111 (337)
T 1cf2_P 91 G-AKNLK------MYKEKGIKAIFQGGE 111 (337)
T ss_dssp H-HHHHH------HHHHHTCCEEECTTS
T ss_pred h-HHHHH------HHHHcCCEEEEecCC
Confidence 3 33322 223456678887765
|
| >3d3w_A L-xylulose reductase; uronate cycle, short-chain dehydrogenase/reductase(SDR) superfamily, glucose metabolism, acetylation, carbohydrate metabolism; HET: NAP; 1.87A {Homo sapiens} PDB: 1wnt_A* 1pr9_A* | Back alignment and structure |
|---|
Probab=89.13 E-value=1.5 Score=35.33 Aligned_cols=68 Identities=18% Similarity=0.212 Sum_probs=44.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|++.+|++++.+.+.+.- .+.+++..=+.++.+++.++.. ..+=+++
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~-----------~~~~~~~~D~~~~~~~~~~~~~-------~~~id~v 80 (244)
T 3d3w_A 19 IGRGTVQALHATGARVVAVSRTQADLDSLVREC-----------PGIEPVCVDLGDWEATERALGS-------VGPVDLL 80 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHS-----------TTCEEEECCTTCHHHHHHHHTT-------CCCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHc-----------CCCCEEEEeCCCHHHHHHHHHH-------cCCCCEE
Confidence 799999999999999999999988776654321 1223333334566666666642 1123577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 81 i~~Ag~ 86 (244)
T 3d3w_A 81 VNNAAV 86 (244)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 776654
|
| >3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.11 E-value=0.65 Score=38.57 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=20.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN 23 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~ 23 (286)
||.++|+.|+++|++|.+.+|+
T Consensus 22 IG~~ia~~l~~~G~~V~~~~~~ 43 (287)
T 3pxx_A 22 QGRSHAVKLAEEGADIILFDIC 43 (287)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCeEEEEccc
Confidence 7999999999999999999987
|
| >2pd4_A Enoyl-[acyl-carrier-protein] reductase [NADH]; antibacterial target, type II fatty acid biosynthesis, enoyl-ACP-reductase, FABI; HET: NAD DCN; 2.30A {Helicobacter pylori} SCOP: c.2.1.2 PDB: 2pd3_A* | Back alignment and structure |
|---|
Probab=89.10 E-value=0.67 Score=38.38 Aligned_cols=73 Identities=12% Similarity=0.015 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch---HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD---ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~---~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||..+++.|++.|++|++.+|+++ ..+.+.+.. ....++..=+.++.+++.++.. +.+...+=
T Consensus 20 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~l~~~~-----------~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~i 85 (275)
T 2pd4_A 20 IAYGIAQSCFNQGATLAFTYLNESLEKRVRPIAQEL-----------NSPYVYELDVSKEEHFKSLYNS---VKKDLGSL 85 (275)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSTTTHHHHHHHHHHT-----------TCCCEEECCTTCHHHHHHHHHH---HHHHTSCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc-----------CCcEEEEcCCCCHHHHHHHHHH---HHHHcCCC
Confidence 799999999999999999999875 333332211 1133444445666677776653 33323233
Q ss_pred CEEEEcCCCC
Q psy764 79 VIVIDSSTVD 88 (286)
Q Consensus 79 ~ivid~st~~ 88 (286)
+++|++....
T Consensus 86 d~lv~nAg~~ 95 (275)
T 2pd4_A 86 DFIVHSVAFA 95 (275)
T ss_dssp EEEEECCCCC
T ss_pred CEEEECCccC
Confidence 5677766543
|
| >1vkn_A N-acetyl-gamma-glutamyl-phosphate reductase; TM1782, structu genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; 1.80A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.1 | Back alignment and structure |
|---|
Probab=89.10 E-value=0.79 Score=39.72 Aligned_cols=77 Identities=13% Similarity=0.141 Sum_probs=47.4
Q ss_pred ccHHHHHHHHhCCC-cEEEEc--CCch-HHHH----HHHcCCcccC-CHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYD--KNTD-ASQT----LAKEGANMAL-SLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~d--r~~~-~~~~----l~~~g~~~~~-s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
+|.-|.+.|.++.. ++.... ++.. ++.. +. ....+.+ +..++.+++|++|+|+|.. ..+++...
T Consensus 25 vG~ellrlL~~hP~~el~~l~S~~~aG~~~~~~~p~~~-~~l~~~~~~~~~~~~~~Dvvf~alp~~-~s~~~~~~----- 97 (351)
T 1vkn_A 25 TGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTL-ENSILSEFDPEKVSKNCDVLFTALPAG-ASYDLVRE----- 97 (351)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGC-CCCBCBCCCHHHHHHHCSEEEECCSTT-HHHHHHTT-----
T ss_pred HHHHHHHHHHcCCCcEEEEEeCcccccCChHHhChhhc-cCceEEeCCHHHhhcCCCEEEECCCcH-HHHHHHHH-----
Confidence 57888888887754 555543 2222 1221 11 2233322 4556668899999999975 44555442
Q ss_pred ccCCCCCEEEEcCCCC
Q psy764 73 KHAKPGVIVIDSSTVD 88 (286)
Q Consensus 73 ~~l~~g~ivid~st~~ 88 (286)
+ .|..|||.|+..
T Consensus 98 --~-~g~~VIDlSsdf 110 (351)
T 1vkn_A 98 --L-KGVKIIDLGADF 110 (351)
T ss_dssp --C-CSCEEEESSSTT
T ss_pred --h-CCCEEEECChhh
Confidence 2 689999999853
|
| >3ek2_A Enoyl-(acyl-carrier-protein) reductase (NADH); ssgcid, oxidoreductase, structural genomics; 1.90A {Burkholderia pseudomallei 1710B} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=89.05 E-value=0.92 Score=37.17 Aligned_cols=76 Identities=5% Similarity=-0.069 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|++.|++|.+.+|+....+.+.+. .+......++..=+.++.+++.++.. +.+...+=+++
T Consensus 28 iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~id~l 96 (271)
T 3ek2_A 28 IAYGIAKACKREGAELAFTYVGDRFKDRITEF--------AAEFGSELVFPCDVADDAQIDALFAS---LKTHWDSLDGL 96 (271)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH--------HHHTTCCCEEECCTTCHHHHHHHHHH---HHHHCSCEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEecchhhHHHHHHH--------HHHcCCcEEEECCCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 79999999999999999999885433333211 00011233444446677777777764 43333333677
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|++....
T Consensus 97 v~nAg~~ 103 (271)
T 3ek2_A 97 VHSIGFA 103 (271)
T ss_dssp EECCCCC
T ss_pred EECCccC
Confidence 7766543
|
| >1gee_A Glucose 1-dehydrogenase; short-chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 1.60A {Bacillus megaterium} SCOP: c.2.1.2 PDB: 1rwb_A* 1gco_A* 1g6k_A* 3aus_A 3aut_A* 3auu_A* | Back alignment and structure |
|---|
Probab=89.05 E-value=0.62 Score=38.06 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=24.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcC-CchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK-NTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr-~~~~~~~l 30 (286)
||..+++.|++.|++|++.+| ++++.+.+
T Consensus 19 iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~ 48 (261)
T 1gee_A 19 LGKSMAIRFATEKAKVVVNYRSKEDEANSV 48 (261)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEcCCChHHHHHH
Confidence 799999999999999999999 77665544
|
| >3t7c_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: NAD; 1.95A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=89.05 E-value=0.65 Score=39.09 Aligned_cols=22 Identities=23% Similarity=0.228 Sum_probs=20.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN 23 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~ 23 (286)
||.++|+.|++.|++|.+.+|+
T Consensus 40 IG~aia~~la~~G~~V~~~~~~ 61 (299)
T 3t7c_A 40 QGRSHAITLAREGADIIAIDVC 61 (299)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCEEEEEecc
Confidence 7999999999999999999987
|
| >3rd5_A Mypaa.01249.C; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, oxidoreductase; HET: EPE; 1.50A {Mycobacterium paratuberculosis} | Back alignment and structure |
|---|
Probab=89.02 E-value=0.66 Score=38.75 Aligned_cols=56 Identities=21% Similarity=0.145 Sum_probs=38.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
||..+++.|++.|++|++.+|++++.+.+.+.- -.+..++..=+.+..+++.++..
T Consensus 28 IG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dl~d~~~v~~~~~~ 83 (291)
T 3rd5_A 28 LGAVTARELARRGATVIMAVRDTRKGEAAARTM----------AGQVEVRELDLQDLSSVRRFADG 83 (291)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHTTS----------SSEEEEEECCTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------cCCeeEEEcCCCCHHHHHHHHHh
Confidence 799999999999999999999998877665421 01222333334556666666653
|
| >2z1n_A Dehydrogenase; reductase, SDR, oxidoreductase; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=89.01 E-value=0.9 Score=37.19 Aligned_cols=75 Identities=11% Similarity=0.210 Sum_probs=44.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-h-cCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-S-GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~-~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. +.+.. . +..++..=+.++++++.++.. +.+... =+
T Consensus 19 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~D~~~~~~v~~~~~~---~~~~~g-id 87 (260)
T 2z1n_A 19 LGFASALELARNGARLLLFSRNREKLEAAASR-------IASLVSGAQVDIVAGDIREPGDIDRLFEK---ARDLGG-AD 87 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHSTTCCEEEEECCTTCHHHHHHHHHH---HHHTTC-CS
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH-------HHhcCCCCeEEEEEccCCCHHHHHHHHHH---HHHhcC-CC
Confidence 79999999999999999999998876655331 01000 0 122233334566666666653 322222 35
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++...
T Consensus 88 ~lv~~Ag~ 95 (260)
T 2z1n_A 88 ILVYSTGG 95 (260)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 67776543
|
| >3f9i_A 3-oxoacyl-[acyl-carrier-protein] reductase; 3-ketoacyl-(acyl-carrier-protein) reductase, FAT biosynthesis, lipid synthesis, NADP; 2.25A {Rickettsia prowazekii} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=89.01 E-value=1.1 Score=36.40 Aligned_cols=69 Identities=13% Similarity=0.146 Sum_probs=43.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|++.|++|.+.+|++++.+.+.+.- -....++..-+.+..+++.++.. ..+=+++
T Consensus 26 IG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~D~~~~~~~~~~~~~-------~~~id~l 88 (249)
T 3f9i_A 26 IGSAIARLLHKLGSKVIISGSNEEKLKSLGNAL----------KDNYTIEVCNLANKEECSNLISK-------TSNLDIL 88 (249)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------CSSEEEEECCTTSHHHHHHHHHT-------CSCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHh----------ccCccEEEcCCCCHHHHHHHHHh-------cCCCCEE
Confidence 799999999999999999999998877664320 01222333334555566666543 1223567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|++...
T Consensus 89 i~~Ag~ 94 (249)
T 3f9i_A 89 VCNAGI 94 (249)
T ss_dssp EECCC-
T ss_pred EECCCC
Confidence 766554
|
| >1zmt_A Haloalcohol dehalogenase HHEC; halohydrin dehalogenase, epoxide catalysis, enantioselectivity, lyase; HET: RNO; 1.70A {Agrobacterium tumefaciens} SCOP: c.2.1.2 PDB: 1pwz_A 1px0_A* 1pwx_A* 1zo8_A* | Back alignment and structure |
|---|
Probab=88.99 E-value=0.67 Score=37.88 Aligned_cols=29 Identities=21% Similarity=0.134 Sum_probs=25.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||..+++.|++.|++|.+.+|++++.+.+
T Consensus 13 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~ 41 (254)
T 1zmt_A 13 GGMGSALRLSEAGHTVACHDESFKQKDEL 41 (254)
T ss_dssp THHHHHHHHHHTTCEEEECCGGGGSHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 79999999999999999999998776554
|
| >3nyw_A Putative oxidoreductase; fatty acid synthesis,3-oxoacyl-[ACP] reductase, NADP+ bindin rossman fold, PSI-II, nysgxrc; 2.16A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.94 E-value=0.43 Score=39.06 Aligned_cols=76 Identities=9% Similarity=0.089 Sum_probs=46.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh---hcCcEEEEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA---SGAEFIISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~---~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++|+.|++.|++|.+.+|++++.+.+.+. +.+.. ....++-.=+.+..+++.++.. +.+...+=
T Consensus 19 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~-------~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~i 88 (250)
T 3nyw_A 19 IGAVIAAGLATDGYRVVLIARSKQNLEKVHDE-------IMRSNKHVQEPIVLPLDITDCTKADTEIKD---IHQKYGAV 88 (250)
T ss_dssp HHHHHHHHHHHHTCEEEEEESCHHHHHHHHHH-------HHHHCTTSCCCEEEECCTTCHHHHHHHHHH---HHHHHCCE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHhccccCcceEEeccCCCHHHHHHHHHH---HHHhcCCC
Confidence 79999999999999999999999887665432 11110 1122233335566666666653 33322233
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
+++|++...
T Consensus 89 D~lvnnAg~ 97 (250)
T 3nyw_A 89 DILVNAAAM 97 (250)
T ss_dssp EEEEECCCC
T ss_pred CEEEECCCc
Confidence 567766544
|
| >3uve_A Carveol dehydrogenase ((+)-trans-carveol dehydrog; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: NAD PG4; 1.55A {Mycobacterium avium} SCOP: c.2.1.0 PDB: 3uwr_A* | Back alignment and structure |
|---|
Probab=88.92 E-value=0.6 Score=38.89 Aligned_cols=22 Identities=23% Similarity=0.196 Sum_probs=20.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN 23 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~ 23 (286)
||.++|+.|++.|++|.+.||+
T Consensus 23 IG~aia~~la~~G~~V~~~~~~ 44 (286)
T 3uve_A 23 QGRSHAVRLAQEGADIIAVDIC 44 (286)
T ss_dssp HHHHHHHHHHHTTCEEEEEECC
T ss_pred HHHHHHHHHHHCCCeEEEEecc
Confidence 7999999999999999999987
|
| >3dr3_A N-acetyl-gamma-glutamyl-phosphate reductase; csgid target, ARGC, essential gene, amino-acid biosynthesis, arginine biosynthesis, cytoplasm; HET: MLT; 2.00A {Shigella flexneri} PDB: 2g17_A | Back alignment and structure |
|---|
Probab=88.92 E-value=0.2 Score=43.31 Aligned_cols=80 Identities=11% Similarity=0.125 Sum_probs=47.4
Q ss_pred ccHHHHHHHHhC-CCcEEEEcCCc---h---HHHH----HHHc-CCcccC--CHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQ-GHDVIVYDKNT---D---ASQT----LAKE-GANMAL--SLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~dr~~---~---~~~~----l~~~-g~~~~~--s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
+|..+.+.|.+. .+++.....+. . ++.. +... ...+.+ +..++.+++|+||+|+|.. ..++...
T Consensus 16 vG~~l~~~L~~~p~~el~~l~s~~~~~saGk~~~~~~p~~~~~~~~~v~~~~~~~~~~~~~Dvvf~a~p~~-~s~~~~~- 93 (337)
T 3dr3_A 16 AGAELVTYVNRHPHMNITALTVSAQSNDAGKLISDLHPQLKGIVELPLQPMSDISEFSPGVDVVFLATAHE-VSHDLAP- 93 (337)
T ss_dssp HHHHHHHHHHHCTTEEEEEEEEETTCTTTTSBHHHHCGGGTTTCCCBEEEESSGGGTCTTCSEEEECSCHH-HHHHHHH-
T ss_pred HHHHHHHHHHhCCCCcEEEEEecCchhhcCCchHHhCccccCccceeEeccCCHHHHhcCCCEEEECCChH-HHHHHHH-
Confidence 688888988874 45666553222 2 1221 1111 222222 4555558999999999964 3344433
Q ss_pred CccccccCCCCCEEEEcCCCC
Q psy764 68 SDGILKHAKPGVIVIDSSTVD 88 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~~ 88 (286)
..+..|..|||.|+-.
T Consensus 94 -----~~~~~g~~vIDlSa~f 109 (337)
T 3dr3_A 94 -----QFLEAGCVVFDLSGAF 109 (337)
T ss_dssp -----HHHHTTCEEEECSSTT
T ss_pred -----HHHHCCCEEEEcCCcc
Confidence 1245689999999864
|
| >1zmo_A Halohydrin dehalogenase; haloalcohol dehalogenase, short- chain dehydrogenase/reductase family, lyase; 2.00A {Arthrobacter SP} | Back alignment and structure |
|---|
Probab=88.82 E-value=0.27 Score=40.06 Aligned_cols=31 Identities=13% Similarity=0.119 Sum_probs=27.0
Q ss_pred ccHHHHHHHHhCCCcEEEE-c--CCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVY-D--KNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~-d--r~~~~~~~l~~ 32 (286)
||.++++.|++.|++|.+. + |++++.+.+.+
T Consensus 13 IG~~ia~~l~~~G~~V~~~~~~~r~~~~~~~~~~ 46 (244)
T 1zmo_A 13 AGPAAVEALTQDGYTVVCHDASFADAAERQRFES 46 (244)
T ss_dssp THHHHHHHHHHTTCEEEECCGGGGSHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEecCCcCCHHHHHHHHH
Confidence 7999999999999999999 6 99887766643
|
| >2b4q_A Rhamnolipids biosynthesis 3-oxoacyl-[acyl- carrier-protein] reductase; RHLG-NADP complex, oxidoreductase; HET: NAP; 2.30A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.78 E-value=0.64 Score=38.62 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=26.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~ 31 (286)
||..+++.|++.|++|.+.+|++++.+.+.
T Consensus 41 IG~aia~~L~~~G~~V~~~~r~~~~~~~~~ 70 (276)
T 2b4q_A 41 IGQMIAQGLLEAGARVFICARDAEACADTA 70 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 799999999999999999999988766553
|
| >2nm0_A Probable 3-oxacyl-(acyl-carrier-protein) reductas; oxidoreductase; 1.99A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=88.77 E-value=0.31 Score=40.04 Aligned_cols=65 Identities=15% Similarity=0.153 Sum_probs=41.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++++.|++.|++|.+.+|++++.+. ...+..=+.++++++.++.. +.+...+=+++
T Consensus 33 IG~aia~~l~~~G~~V~~~~r~~~~~~~------------------~~~~~~Dl~d~~~v~~~~~~---~~~~~g~iD~l 91 (253)
T 2nm0_A 33 IGLAIARAFADAGDKVAITYRSGEPPEG------------------FLAVKCDITDTEQVEQAYKE---IEETHGPVEVL 91 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSCCCTT------------------SEEEECCTTSHHHHHHHHHH---HHHHTCSCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHhhcc------------------ceEEEecCCCHHHHHHHHHH---HHHHcCCCCEE
Confidence 7999999999999999999998764321 22233334566666666653 33333333567
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+....
T Consensus 92 v~nAg~ 97 (253)
T 2nm0_A 92 IANAGV 97 (253)
T ss_dssp EEECSC
T ss_pred EECCCC
Confidence 766544
|
| >2c07_A 3-oxoacyl-(acyl-carrier protein) reductase; oxidoreductase, FABG, short-chain alcohol reductase, fatty acid biosynthesis, apicoplast; 1.5A {Plasmodium falciparum} SCOP: c.2.1.2 | Back alignment and structure |
|---|
Probab=88.72 E-value=0.61 Score=38.87 Aligned_cols=74 Identities=15% Similarity=0.190 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+++.|++.|++|.+.+|++++.+.+.+. +.+ ...++.+ .=+.++++++.++.. +.+...+=+
T Consensus 56 IG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~-------l~~--~~~~~~~~~~Dl~d~~~v~~~~~~---~~~~~~~id 123 (285)
T 2c07_A 56 IGREIAKMLAKSVSHVICISRTQKSCDSVVDE-------IKS--FGYESSGYAGDVSKKEEISEVINK---ILTEHKNVD 123 (285)
T ss_dssp HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-------HHT--TTCCEEEEECCTTCHHHHHHHHHH---HHHHCSCCC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHH-------HHh--cCCceeEEECCCCCHHHHHHHHHH---HHHhcCCCC
Confidence 79999999999999999999998776655321 000 0122222 234566667666643 333233336
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
+||++...
T Consensus 124 ~li~~Ag~ 131 (285)
T 2c07_A 124 ILVNNAGI 131 (285)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 77776654
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=88.70 E-value=0.72 Score=36.00 Aligned_cols=33 Identities=9% Similarity=0.190 Sum_probs=26.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG 34 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g 34 (286)
+|..+++.+...|.+|++.+|++++.+.+.+.|
T Consensus 51 iG~~~~~~~~~~G~~V~~~~~~~~~~~~~~~~g 83 (198)
T 1pqw_A 51 VGMAAVSIAKMIGARIYTTAGSDAKREMLSRLG 83 (198)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC
Confidence 678888888888999999999988877665544
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=88.58 E-value=2.2 Score=36.97 Aligned_cols=63 Identities=14% Similarity=0.191 Sum_probs=38.6
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCcccC-------CHHHHhh-----cCcEEEEecCChhHHHHH
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMAL-------SLSTLAS-----GAEFIISMLPASQDVLDA 64 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~-------s~~e~~~-----~adivi~~v~~~~~~~~v 64 (286)
+|...++.+...|. +|++.++++++.+.+.+.|+...- +..+.++ ..|+||-|+..+..++..
T Consensus 202 vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~~lGa~~vi~~~~~~~~~~~~v~~~~~~g~D~vid~~g~~~~~~~~ 277 (373)
T 2fzw_A 202 VGLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAA 277 (373)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCceEeccccccccHHHHHHHHhCCCCCEEEECCCcHHHHHHH
Confidence 46666666666787 799999999998888777764221 2222222 356666666654344443
|
| >3a28_C L-2.3-butanediol dehydrogenase; chiral substrate recognition, oxidoreductase; HET: NAD; 2.00A {Brevibacterium saccharolyticum} | Back alignment and structure |
|---|
Probab=88.57 E-value=0.5 Score=38.75 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=43.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH--HHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA--SQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~--~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||..+++.|++.|++|.+.+|++++ .+.+.+. +.+ ...++.+ .=+.++.+++.++.. +.+...+
T Consensus 14 IG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~ 81 (258)
T 3a28_C 14 IGRGISEKLAADGFDIAVADLPQQEEQAAETIKL-------IEA--ADQKAVFVGLDVTDKANFDSAIDE---AAEKLGG 81 (258)
T ss_dssp HHHHHHHHHHHHTCEEEEEECGGGHHHHHHHHHH-------HHT--TTCCEEEEECCTTCHHHHHHHHHH---HHHHHTC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHHHHH---HHHHhCC
Confidence 7999999999999999999999876 5444321 000 0122222 234556666666543 3332323
Q ss_pred CCEEEEcCCC
Q psy764 78 GVIVIDSSTV 87 (286)
Q Consensus 78 g~ivid~st~ 87 (286)
=+++|++...
T Consensus 82 iD~lv~nAg~ 91 (258)
T 3a28_C 82 FDVLVNNAGI 91 (258)
T ss_dssp CCEEEECCCC
T ss_pred CCEEEECCCC
Confidence 3577776543
|
| >3ing_A Homoserine dehydrogenase; NP_394635.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: NDP; 1.95A {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=88.54 E-value=0.34 Score=41.61 Aligned_cols=160 Identities=16% Similarity=0.173 Sum_probs=83.2
Q ss_pred ccHHHHHHHHhC-----C--CcE-EEEcCCchHH---------H-HHHHcC-Ccc-cCCHHHHhh--cCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQ-----G--HDV-IVYDKNTDAS---------Q-TLAKEG-ANM-ALSLSTLAS--GAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~-----G--~~V-~~~dr~~~~~---------~-~l~~~g-~~~-~~s~~e~~~--~adivi~~v~~~~ 59 (286)
||+.+++.|.++ | .+| .+.|+++++. . ...+.| +.. .-+..+++. +.|+|+.|.|+..
T Consensus 15 VG~~~~~~L~~~~~~~~g~~l~lvaVad~~~~~~~~~idl~~~~~~~~~~g~~~~~~~d~~e~l~~~~iDvVVe~T~~~~ 94 (325)
T 3ing_A 15 VGLNVLRIIDASNRRRSAFSIKVVGVSDSRSYASGRNLDISSIISNKEKTGRISDRAFSGPEDLMGEAADLLVDCTPASR 94 (325)
T ss_dssp HHHHHHHHHHHHHHHC--CEEEEEEEECSSBEEECSSCCHHHHHHHHHHHSCSCSSBCCSGGGGTTSCCSEEEECCCCCS
T ss_pred HHHHHHHHHHhchhhccCCCEEEEEEEecChhhcccccCHHHHHHHhhhcCCCCcccCCHHHHhcCCCCCEEEECCCCcc
Confidence 788888888763 3 343 3558876421 1 122224 211 115677764 5899999998642
Q ss_pred HHHHHhcCCccccccCCCCCEEEEcCCCC-chHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEecCCHhhHHHH
Q psy764 60 DVLDAYDGSDGILKHAKPGVIVIDSSTVD-PQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMVGGDKSSLEKA 137 (286)
Q Consensus 60 ~~~~v~~~~~~l~~~l~~g~ivid~st~~-p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~ 137 (286)
..+....- ....+..|+-||.++... ....+++.+..+++|..+. ++.+.++. ..+..+
T Consensus 95 ~~~pa~~~---~~~aL~aGkhVVtaNK~~la~~~~eL~~lA~~~g~~~~~Ea~vg~gi----------------Pii~~l 155 (325)
T 3ing_A 95 DGVREYSL---YRMAFESGMNVVTANKSGLANKWHDIMDSANQNSKYIRYEATVAGGV----------------PLFSVL 155 (325)
T ss_dssp SSHHHHHH---HHHHHHTTCEEEECCCHHHHHHHHHHHHHHHHHTCCEECGGGSSTTS----------------CCHHHH
T ss_pred ccchHHHH---HHHHHHCCCeEEEcCchhHHHHHHHHHHHHHHcCCeEEEEeeecccC----------------HHHHHH
Confidence 21111110 233466788888665522 1345567777777787654 33333322 123555
Q ss_pred HHHHHHhcCCeEecCCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHcCC
Q psy764 138 KPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVT--MMGVAEAMNLGVKLGM 187 (286)
Q Consensus 138 ~~ll~~~g~~v~~~g~~g~a~~~Kl~~n~~~~~~--~~~~~Ea~~l~~~~Gl 187 (286)
++++ -+.++..+..+=+|.. |+++.-+ -..+.|++.-|++.|.
T Consensus 156 ~~~l--~g~~I~~i~Gi~nGT~-----nyil~~m~~g~~f~~~l~~Aq~~Gy 200 (325)
T 3ing_A 156 DYSI--LPSKVKRFRGIVSSTI-----NYVIRNMANGRSLRDVVDDAIKKGI 200 (325)
T ss_dssp HHTC--TTCCEEEEEEECCHHH-----HHHHHHHHTTCCHHHHHHHHHHHTC
T ss_pred HHHh--hCCCeeEEEEEEEeee-----eEEeecccCCCCHHHHHHHHHHcCC
Confidence 5555 3455655544323332 3322221 1246677777777665
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=88.50 E-value=1.1 Score=38.33 Aligned_cols=64 Identities=14% Similarity=0.162 Sum_probs=41.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-----CCHHHHhh----cCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-----LSLSTLAS----GAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-----~s~~e~~~----~adivi~~v~~~~~~~~v~ 65 (286)
||...++.+...|.+|++.++++++.+.+.+.|+... .+..+.+. ..|++|.++..+..++..+
T Consensus 178 vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~~~g~~d~vid~~g~~~~~~~~~ 250 (340)
T 3s2e_A 178 LGHVAVQYARAMGLRVAAVDIDDAKLNLARRLGAEVAVNARDTDPAAWLQKEIGGAHGVLVTAVSPKAFSQAI 250 (340)
T ss_dssp THHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEESSCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHcCCCEEEeCCCcCHHHHHHHhCCCCCEEEEeCCCHHHHHHHH
Confidence 6777777777889999999999999988888775422 12222222 4566666665544444433
|
| >3osu_A 3-oxoacyl-[acyl-carrier-protein] reductase; structural genomics, csgid, center for structural genomics O infectious diseases; 1.90A {Staphylococcus aureus subsp} SCOP: c.2.1.0 PDB: 3sj7_A* | Back alignment and structure |
|---|
Probab=88.49 E-value=0.78 Score=37.26 Aligned_cols=74 Identities=11% Similarity=0.206 Sum_probs=43.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcC-CchHHHHHHHcCCcccCCHHHHhhcCcEE--EEecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDK-NTDASQTLAKEGANMALSLSTLASGAEFI--ISMLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr-~~~~~~~l~~~g~~~~~s~~e~~~~adiv--i~~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++++.|+++|++|.+.++ ++++.+.+.+. +.+ ...++. -.=+.++++++.++.. +.+...+=
T Consensus 16 IG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~-------~~~--~~~~~~~~~~Dv~d~~~v~~~~~~---~~~~~g~i 83 (246)
T 3osu_A 16 IGRSIALQLAEEGYNVAVNYAGSKEKAEAVVEE-------IKA--KGVDSFAIQANVADADEVKAMIKE---VVSQFGSL 83 (246)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHH--TTSCEEEEECCTTCHHHHHHHHHH---HHHHHSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCC
Confidence 799999999999999988766 55655544321 011 112232 2334566667766653 33333344
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
+++|++...
T Consensus 84 d~lv~nAg~ 92 (246)
T 3osu_A 84 DVLVNNAGI 92 (246)
T ss_dssp CEEEECCCC
T ss_pred CEEEECCCC
Confidence 677776654
|
| >4e3z_A Putative oxidoreductase protein; PSI-biology, structural genomics, protein structure initiati nysgrc,oxidoreductase; 2.00A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=88.46 E-value=1.2 Score=36.81 Aligned_cols=76 Identities=13% Similarity=0.115 Sum_probs=45.1
Q ss_pred ccHHHHHHHHhCCCcEEEE-cCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVY-DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~-dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|++.|++|.+. +|++++.+.+.+. ..+.-.+..++..=+.++++++.++.. +.+...+=++
T Consensus 38 IG~a~a~~l~~~G~~V~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~Dl~~~~~v~~~~~~---~~~~~g~id~ 107 (272)
T 4e3z_A 38 IGAAVCRLAARQGWRVGVNYAANREAADAVVAA-------ITESGGEAVAIPGDVGNAADIAAMFSA---VDRQFGRLDG 107 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHHTTCEEEEEECCTTCHHHHHHHHHH---HHHHHSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEcCCChhHHHHHHHH-------HHhcCCcEEEEEcCCCCHHHHHHHHHH---HHHhCCCCCE
Confidence 7999999999999999775 8888776655332 011101222233334566667766653 3333333467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 108 li~nAg~ 114 (272)
T 4e3z_A 108 LVNNAGI 114 (272)
T ss_dssp EEECCCC
T ss_pred EEECCCC
Confidence 7776554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 286 | ||||
| d1vpda2 | 161 | c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase | 9e-34 | |
| d3cuma1 | 134 | a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydroge | 4e-32 | |
| d3cuma2 | 162 | c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase | 9e-31 | |
| d1vpda1 | 133 | a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydroge | 4e-25 | |
| d2cvza1 | 132 | a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydroge | 2e-24 | |
| d2cvza2 | 156 | c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase | 6e-19 | |
| d1pgja2 | 178 | c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase | 3e-17 | |
| d2b0ja2 | 242 | c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopt | 1e-15 | |
| d1i36a2 | 152 | c.2.1.6 (A:1-152) Conserved hypothetical protein M | 2e-15 | |
| d2pgda2 | 176 | c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase | 7e-11 | |
| d2pv7a2 | 152 | c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA { | 2e-09 | |
| d2i76a2 | 153 | c.2.1.6 (A:2-154) Hypothetical protein TM1727 {The | 4e-09 | |
| d2f1ka2 | 165 | c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {S | 6e-08 | |
| d1jaya_ | 212 | c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase | 1e-04 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 161 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 118 bits (297), Expect = 9e-34
Identities = 53/143 (37%), Positives = 84/143 (58%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ ++V D+N +A + GA A + +A + II+MLP S V + G +
Sbjct: 19 LLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGEN 78
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
GI++ AKPG ++ID S++ P + +S+ + K + LDAPVSGG A + TL+ MVGG
Sbjct: 79 GIIEGAKPGTVLIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGG 138
Query: 130 DKSSLEKAKPILKCMGRNIVHCG 152
DK+ +K ++K M ++VH G
Sbjct: 139 DKAIFDKYYDLMKAMAGSVVHTG 161
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 134 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 113 bits (284), Expect = 4e-32
Identities = 62/129 (48%), Positives = 88/129 (68%)
Query: 154 SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVP 213
G GQVAK+CNN LL V M+G AEAM LGV G+ AK+L++++ SSG W+ EVYNP P
Sbjct: 2 DGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWP 61
Query: 214 GVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDK 273
GV+ N PAS +Y+GGF L+AKD+ LA++ A + T + LA S+Y+ L+ +G ++
Sbjct: 62 GVMENAPASRDYSGGFMAQLMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAER 121
Query: 274 DFSYIYEFL 282
DFS + +
Sbjct: 122 DFSVVQKLF 130
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 111 bits (277), Expect = 9e-31
Identities = 66/143 (46%), Positives = 85/143 (59%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L G+ + V+D A L GA+ A S GA+ +ISMLPASQ V Y D
Sbjct: 20 LLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDD 79
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
G+L H PG +V++ ST+ P + + ARE+ + LDAPVSGGT A TLTFMVGG
Sbjct: 80 GLLAHIAPGTLVLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGG 139
Query: 130 DKSSLEKAKPILKCMGRNIVHCG 152
D +LEKA+P+ + MGRNI H G
Sbjct: 140 DAEALEKARPLFEAMGRNIFHAG 162
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} Length = 133 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Score = 95.1 bits (236), Expect = 4e-25
Identities = 32/134 (23%), Positives = 56/134 (41%), Gaps = 7/134 (5%)
Query: 153 DSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPV 212
D G G V KL N +++ + + ++EA+ L K G+N L+ I + P+
Sbjct: 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAPM 60
Query: 213 PGVLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQD 272
+ P GF+I L KD+ A D ++ AQ L+ + + L G +
Sbjct: 61 VMDRNFKP-------GFRIDLHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGN 113
Query: 273 KDFSYIYEFLKNKT 286
D S + + +
Sbjct: 114 DDHSALACYYEKLA 127
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 132 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 93.2 bits (231), Expect = 2e-24
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 6/132 (4%)
Query: 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPG 214
G G K NN LL V + E + VK G++A+ +VIN SSGR ++E P
Sbjct: 2 GAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIPQR- 60
Query: 215 VLSNVPASNNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKD 274
+ + F + LL KD+ +A + + A + L +LA +Y+ + D D
Sbjct: 61 -----VLTRAFPKTFALGLLVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDAD 115
Query: 275 FSYIYEFLKNKT 286
L+
Sbjct: 116 HVEALRLLERWG 127
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Score = 79.6 bits (195), Expect = 6e-19
Identities = 34/143 (23%), Positives = 67/143 (46%), Gaps = 6/143 (4%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L + ++ A + + G+ + + Y+ ++
Sbjct: 19 LARRFPTLVWNRTFEKALRHQEEFGSEA-----VPLERVAEARVIFTCLPTTREVYEVAE 73
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
+ + + G +D+++ +P+ + L+ REK +T+LDAPVSGGT A+ TLT M+GG
Sbjct: 74 ALYPYLREGTYWVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGG 133
Query: 130 DKSSLEKAKPILKCMGRNIVHCG 152
+ ++E+ +P L + +VH G
Sbjct: 134 PEEAVERVRPFL-AYAKKVVHVG 155
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Score = 75.8 bits (185), Expect = 3e-17
Identities = 27/160 (16%), Positives = 53/160 (33%), Gaps = 13/160 (8%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTL-ASGAEFIISMLPASQDVLDAYDGS 68
+ +G V V+++ S+ K A+ + + E + L + L
Sbjct: 20 IAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAG 79
Query: 69 DGI-------LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEA 121
K + G I++D+ + + + FL +SGG +
Sbjct: 80 AATDSTIEQLKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEG-ARK 138
Query: 122 TLTFMVGGDKSSLEKAKPILKCMGRNIV----HCGDSGNG 157
F GG S E+ +PI++ +G+G
Sbjct: 139 GPAFFPGGTLSVWEEIRPIVEAAAAKADDGRPCVTMNGSG 178
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Score = 72.3 bits (177), Expect = 1e-15
Identities = 15/117 (12%), Positives = 29/117 (24%), Gaps = 4/117 (3%)
Query: 34 GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQ 93
G + GA+ +I+ LP D G IV + T+
Sbjct: 128 GLKVTSDDREAVEGADIVITWLPKGNKQPDIIKK---FADAIPEGAIVTHACTIPTTKFA 184
Query: 94 TLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVH 150
+ + + + G + + ++ K I K
Sbjct: 185 KIFKDLGREDLNI-TSYHPGCVPEMKGQVYIAEGYASEEAVNKLYEIGKIARGKAFK 240
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 69.9 bits (170), Expect = 2e-15
Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 12/144 (8%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L+ +G +V+ + S + + +IS + + A
Sbjct: 19 LRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARRAGR 78
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG 129
+ +D + + P+ + S+L ++ F+DA + G + G
Sbjct: 79 HVRGI------YVDINNISPETVRMASSLI--EKGGFVDAAIMGSVRRKGADIRIIASGR 130
Query: 130 DKSSLEKAKPILKCMGRNIVHCGD 153
D K L G NI G
Sbjct: 131 DAEEFMK----LNRYGLNIEVRGR 150
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Score = 57.7 bits (138), Expect = 7e-11
Identities = 23/144 (15%), Positives = 49/144 (34%), Gaps = 6/144 (4%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMAL-----SLSTLASGAEFIISMLPASQDVLDA 64
+ G V +++ A SL + S + ++ +
Sbjct: 21 MNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAV 80
Query: 65 YDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLT 124
+ + ++ G I+ID + + ++K I F+ + VSGG +
Sbjct: 81 DNFIEKLVPLLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDG-ARYGPS 139
Query: 125 FMVGGDKSSLEKAKPILKCMGRNI 148
M GG+K + K I + + +
Sbjct: 140 LMPGGNKEAWPHIKAIFQGIAAKV 163
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Score = 53.3 bits (127), Expect = 2e-09
Identities = 6/93 (6%), Positives = 25/93 (26%), Gaps = 5/93 (5%)
Query: 60 DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQIT--FLDAPVSGGTKA 117
+ + + + + +++ D ++V + + + + +
Sbjct: 62 PINLTLETIERLKPYLTENMLLADLTSVKREPLAKMLEVHTGAVLGLHPMFGADIAS--- 118
Query: 118 AQEATLTFMVGGDKSSLEKAKPILKCMGRNIVH 150
+ + G E ++ G I
Sbjct: 119 MAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQ 151
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} Length = 153 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Score = 52.3 bits (124), Expect = 4e-09
Identities = 15/140 (10%), Positives = 37/140 (26%), Gaps = 10/140 (7%)
Query: 14 GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73
+ ++ D ++ LA+ A +L + ++P ++ +
Sbjct: 22 YEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPDRYIK----TVANHLNL 77
Query: 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSS 133
V + + I + S + + F + GD+
Sbjct: 78 GDAVLVHCSGFLSSEIFKKS------GRASIHPNFSFSSLEKALEMKDQIVFGLEGDERG 131
Query: 134 LEKAKPILKCMGRNIVHCGD 153
L K I + +
Sbjct: 132 LPIVKKIAEEISGKYFVIPS 151
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} Length = 165 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Score = 49.4 bits (116), Expect = 6e-08
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 11/150 (7%)
Query: 10 LQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD 69
L+ +GH +I + + + II + Q +L +
Sbjct: 19 LRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPIQLILPTLEKLI 78
Query: 70 GILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQ-ITFLDAPVSGGTKAAQE-------A 121
H P IV D ++V + + S L + + G A+E
Sbjct: 79 ---PHLSPTAIVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPY 135
Query: 122 TLTFMVGGDKSSLEKAKPILKCMGRNIVHC 151
LT D L + +L+ +G I C
Sbjct: 136 VLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Score = 40.0 bits (92), Expect = 1e-04
Identities = 20/188 (10%), Positives = 49/188 (26%), Gaps = 23/188 (12%)
Query: 13 QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDG-- 70
GH+++V + + ++ A E +A S E + + D
Sbjct: 23 LGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDTAR 82
Query: 71 ----------------ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGG 114
+ G + V + L + + + A
Sbjct: 83 DLKNILREKIVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESEKVVSALHTIPAARFAN 142
Query: 115 TKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGDSGNGQVAKLCNNMLLGVTMMG 174
+ + D+S I + G + G N ++ + ++ +
Sbjct: 143 LDEKFDWDVPVCGDDDESKKVVMSLISEIDGLRPLDAGPLSNSRLVESLTPLI-----LN 197
Query: 175 VAEAMNLG 182
+ +G
Sbjct: 198 IMRFNGMG 205
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 286 | |||
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 100.0 | |
| d3cuma2 | 162 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 100.0 | |
| d2pgda2 | 176 | 6-phosphogluconate dehydrogenase {Sheep (Ovis orie | 99.96 | |
| d3cuma1 | 134 | Hydroxyisobutyrate dehydrogenase {Pseudomonas aeru | 99.95 | |
| d2cvza2 | 156 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.95 | |
| d1vpda1 | 133 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 99.94 | |
| d2cvza1 | 132 | Hydroxyisobutyrate dehydrogenase {Thermus thermoph | 99.93 | |
| d1pgja2 | 178 | 6-phosphogluconate dehydrogenase {Trypanosoma bruc | 99.93 | |
| d1i36a2 | 152 | Conserved hypothetical protein MTH1747 {Archaeon M | 99.87 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 99.78 | |
| d2i76a2 | 153 | Hypothetical protein TM1727 {Thermotoga maritima [ | 99.77 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 99.7 | |
| d2b0ja2 | 242 | 5,10-methenyltetrahydromethanopterin hydrogenase, | 99.69 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 99.61 | |
| d2ahra2 | 152 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 99.59 | |
| d1mv8a2 | 202 | GDP-mannose 6-dehydrogenase {Pseudomonas aeruginos | 99.47 | |
| d1yqga2 | 152 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 99.38 | |
| d1n1ea2 | 189 | Glycerol-3- phosphate dehydrogenase {Trypanosome ( | 99.33 | |
| d1txga2 | 180 | Glycerol-3- phosphate dehydrogenase {Archaeoglobus | 99.21 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 99.12 | |
| d1mv8a1 | 98 | GDP-mannose 6-dehydrogenase, middle domain {Pseudo | 98.92 | |
| d1dlja2 | 196 | UDP-glucose dehydrogenase (UDPGDH) {Streptococcus | 98.79 | |
| d1f0ya2 | 192 | Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum | 98.7 | |
| d1wdka3 | 186 | Fatty oxidation complex alpha subunit, middle doma | 98.67 | |
| d1dlja1 | 98 | UDP-glucose dehydrogenase (UDPGDH), middle domain | 98.55 | |
| d1gdha1 | 191 | D-glycerate dehydrogenase {Hyphomicrobium methylov | 98.41 | |
| d1qp8a1 | 181 | Putative formate dehydrogenase {Archaeon Pyrobacul | 98.39 | |
| d1jaya_ | 212 | Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archae | 98.33 | |
| d2naca1 | 188 | Formate dehydrogenase {Pseudomonas sp., strain 101 | 98.33 | |
| d1ks9a2 | 167 | Ketopantoate reductase PanE {Escherichia coli [Tax | 98.32 | |
| d1mx3a1 | 193 | Transcription corepressor CtbP {Human (Homo sapien | 98.3 | |
| d1ygya1 | 184 | Phosphoglycerate dehydrogenase {Mycobacterium tube | 98.18 | |
| d1e5qa1 | 182 | Saccharopine reductase {Rice blast fungus (Magnapo | 98.11 | |
| d2hmva1 | 134 | Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | 98.08 | |
| d1j4aa1 | 197 | D-lactate dehydrogenase {Lactobacillus helveticus | 98.06 | |
| d1sc6a1 | 188 | Phosphoglycerate dehydrogenase {Escherichia coli [ | 97.95 | |
| d1dxya1 | 199 | D-2-hydroxyisocaproate dehydrogenase {Lactobacillu | 97.94 | |
| d1gpja2 | 159 | Glutamyl tRNA-reductase middle domain {Archaeon Me | 97.81 | |
| d1i36a1 | 112 | Conserved hypothetical protein MTH1747 {Archaeon M | 97.62 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 97.52 | |
| d1n1ea1 | 160 | Glycerol-3-phosphate dehydrogenase {Trypanosome (L | 97.52 | |
| d1lssa_ | 132 | Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax | 97.48 | |
| d1np3a2 | 182 | Class I ketol-acid reductoisomerase (KARI) {Pseudo | 97.45 | |
| d1li4a1 | 163 | S-adenosylhomocystein hydrolase {Human (Homo sapie | 97.25 | |
| d1txga1 | 155 | Glycerol-3-phosphate dehydrogenase {Archaeoglobus | 97.04 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 97.04 | |
| d1l7da1 | 183 | Nicotinamide nucleotide transhydrogenase dI compon | 97.02 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 97.0 | |
| d1y81a1 | 116 | Hypothetical protein PF0725 {Pyrococcus furiosus [ | 97.0 | |
| d1tlta1 | 164 | Virulence factor MviM {Escherichia coli [TaxId: 56 | 96.95 | |
| d1v8ba1 | 163 | S-adenosylhomocystein hydrolase {Plasmodium falcip | 96.9 | |
| d1mv8a3 | 136 | GDP-mannose 6-dehydrogenase, GDP-binding domain {P | 96.82 | |
| d1vjta1 | 193 | Putative alpha-glucosidase TM0752 {Thermotoga mari | 96.8 | |
| d1qmga2 | 226 | Class II ketol-acid reductoisomerase (KARI) {Spina | 96.71 | |
| d1omoa_ | 320 | Archaeal alanine dehydrogenase {Archaeon Archaeogl | 96.71 | |
| d1c1da1 | 201 | Phenylalanine dehydrogenase {Rhodococcus sp., M4 [ | 96.7 | |
| d1j6ua1 | 89 | UDP-N-acetylmuramate-alanine ligase MurC {Thermoto | 96.62 | |
| d2d59a1 | 139 | Hypothetical protein PH1109 {Pyrococcus horikoshii | 96.56 | |
| d1ydwa1 | 184 | Probable oxidoreductase At4g09670 {Thale cress (Ar | 96.52 | |
| d1nyta1 | 170 | Shikimate 5-dehydrogenase AroE {Escherichia coli [ | 96.45 | |
| d1x7da_ | 340 | Ornithine cyclodeaminase {Pseudomonas putida [TaxI | 96.32 | |
| d1hdoa_ | 205 | Biliverdin IX beta reductase {Human (Homo sapiens) | 96.26 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 96.08 | |
| d1npya1 | 167 | Shikimate 5-dehydrogenase-like protein HI0607 {Hae | 95.99 | |
| d1b0aa1 | 166 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.91 | |
| d1xeaa1 | 167 | Putative oxidoreductase VCA1048 {Vibrio cholerae [ | 95.86 | |
| d1a4ia1 | 170 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 95.78 | |
| d1iuka_ | 136 | Hypothetical protein TT1466 {Thermus thermophilus | 95.68 | |
| d1zh8a1 | 181 | Hypothetical protein TM0312 {Thermotoga maritima [ | 95.57 | |
| d1yb1a_ | 244 | 17-beta-hydroxysteroid dehydrogenase type XI {Huma | 95.54 | |
| d1mlda1 | 144 | Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 982 | 95.5 | |
| d1p77a1 | 171 | Shikimate 5-dehydrogenase AroE {Haemophilus influe | 95.48 | |
| d1ydea1 | 250 | Retinal dehydrogenase/reductase 3 {Human (Homo sap | 95.35 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 95.32 | |
| d2csua1 | 129 | Acetate-CoA ligase alpha chain, AcdA, N-terminal d | 95.31 | |
| d1luaa1 | 191 | Methylene-tetrahydromethanopterin dehydrogenase {M | 95.19 | |
| d1vi2a1 | 182 | Putative shikimate dehydrogenase YdiB {Escherichia | 95.17 | |
| d1ez4a1 | 146 | Lactate dehydrogenase {Lactobacillus pentosus [Tax | 95.16 | |
| d1q7ba_ | 243 | beta-keto acyl carrier protein reductase {Escheric | 95.07 | |
| d1l7da2 | 194 | Nicotinamide nucleotide transhydrogenase dI compon | 95.04 | |
| d1ulsa_ | 242 | beta-keto acyl carrier protein reductase {Thermus | 95.04 | |
| d2rhca1 | 257 | beta-keto acyl carrier protein reductase {Streptom | 94.99 | |
| d1pr9a_ | 244 | Carbonyl reductase {Human (Homo sapiens) [TaxId: 9 | 94.94 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 94.91 | |
| d1gega_ | 255 | meso-2,3-butanediol dehydrogenase {Klebsiella pneu | 94.91 | |
| d1xg5a_ | 257 | Putative dehydrogenase ARPG836 (MGC4172) {Human (H | 94.89 | |
| d2ae2a_ | 259 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.81 | |
| d1h6da1 | 221 | Glucose-fructose oxidoreductase, N-terminal domain | 94.71 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 94.65 | |
| d1cyda_ | 242 | Carbonyl reductase {Mouse (Mus musculus) [TaxId: 1 | 94.64 | |
| d1leha1 | 230 | Leucine dehydrogenase {Bacillus sphaericus [TaxId: | 94.59 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 94.55 | |
| d2c07a1 | 251 | beta-keto acyl carrier protein reductase {Malaria | 94.49 | |
| d1pjca2 | 193 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 94.48 | |
| d1fmca_ | 255 | 7-alpha-hydroxysteroid dehydrogenase {Escherichia | 94.47 | |
| d1hdca_ | 254 | 3-alpha,20-beta-hydroxysteroid dehydrogenase {Stre | 94.42 | |
| d1bdba_ | 276 | Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Ps | 94.27 | |
| d1iy8a_ | 258 | Levodione reductase {Corynebacterium aquaticum [Ta | 94.21 | |
| d1zema1 | 260 | Xylitol dehydrogenase {Gluconobacter oxydans [TaxI | 94.2 | |
| d1k2wa_ | 256 | Sorbitol dehydrogenase {Rhodobacter sphaeroides [T | 94.17 | |
| d1hxha_ | 253 | 3beta/17beta hydroxysteroid dehydrogenase {Comamon | 94.13 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 94.12 | |
| d1f06a1 | 170 | Diaminopimelic acid dehydrogenase (DAPDH) {Coryneb | 94.09 | |
| d1pzga1 | 154 | Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5 | 93.87 | |
| d1ldna1 | 148 | Lactate dehydrogenase {Bacillus stearothermophilus | 93.65 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 93.54 | |
| d1zk4a1 | 251 | R-specific alcohol dehydrogenase {Lactobacillus br | 93.49 | |
| d1vl8a_ | 251 | Gluconate 5-dehydrogenase {Thermotoga maritima [Ta | 93.37 | |
| d2gdza1 | 254 | 15-hydroxyprostaglandin dehydrogenase, PGDH {Human | 93.14 | |
| d1id1a_ | 153 | Rck domain from putative potassium channel Kch {Es | 93.14 | |
| d1xq1a_ | 259 | Tropinone reductase {Thale cress (Arabidopsis thal | 93.13 | |
| d2bgka1 | 268 | Rhizome secoisolariciresinol dehydrogenase {Mayapp | 92.98 | |
| d1w6ua_ | 294 | 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H | 92.86 | |
| d2a4ka1 | 241 | beta-keto acyl carrier protein reductase {Thermus | 92.84 | |
| d1uxja1 | 142 | Malate dehydrogenase {Chloroflexus aurantiacus [Ta | 92.81 | |
| d2pd4a1 | 274 | Enoyl-ACP reductase {Helicobacter pylori [TaxId: 2 | 92.76 | |
| d2bd0a1 | 240 | Bacterial sepiapterin reductase {Chlorobium tepidu | 92.74 | |
| d1nvta1 | 177 | Shikimate 5-dehydrogenase AroE {Archaeon Methanoco | 92.71 | |
| d2d1ya1 | 248 | Hypothetical protein TTHA0369 {Thermus thermophilu | 92.69 | |
| d1xkqa_ | 272 | Hypothetical protein R05D8.7 {Caenorhabditis elega | 92.68 | |
| d1a5za1 | 140 | Lactate dehydrogenase {Thermotoga maritima [TaxId: | 92.63 | |
| d1nvmb1 | 157 | Acetaldehyde dehydrogenase (acylating) {Pseudomona | 92.61 | |
| d1yxma1 | 297 | Peroxisomal trans 2-enoyl CoA reductase {Human (Ho | 92.52 | |
| d1y6ja1 | 142 | Lactate dehydrogenase {Clostridium thermocellum [T | 92.49 | |
| d1xhla_ | 274 | Hypothetical protein F25D1.5 {Caenorhabditis elega | 92.48 | |
| d1edza1 | 171 | Methylenetetrahydrofolate dehydrogenase/cyclohydro | 92.4 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.3 | |
| d1hyha1 | 146 | L-2-hydroxyisocapronate dehydrogenase, L-HICDH {La | 92.29 | |
| d2nvwa1 | 237 | Galactose/lactose metabolism regulatory protein GA | 92.26 | |
| d1spxa_ | 264 | Glucose dehydrogenase (5l265) {Nematode (Caenorhab | 92.25 | |
| d1h5qa_ | 260 | Mannitol dehydrogenase {Mushroom (Agaricus bisporu | 92.07 | |
| d2jfga1 | 93 | UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase | 91.87 | |
| d1zmta1 | 252 | Halohydrin dehalogenase HheC {Agrobacterium tumefa | 91.81 | |
| d1edoa_ | 244 | beta-keto acyl carrier protein reductase {Oil seed | 91.71 | |
| d1ojua1 | 142 | Malate dehydrogenase {Archaeon Archaeoglobus fulgi | 91.68 | |
| d1ulua_ | 256 | Enoyl-ACP reductase {Thermus thermophilus [TaxId: | 91.66 | |
| d2fy8a1 | 129 | Potassium channel-related protein MthK {Archaeon M | 91.54 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 91.49 | |
| d1obba1 | 171 | Alpha-glucosidase AglA {Thermotoga maritima [TaxId | 91.22 | |
| d1pgja1 | 300 | 6-phosphogluconate dehydrogenase (6PGD) {Trypanoso | 91.21 | |
| d1yqga1 | 111 | Pyrroline-5-carboxylate reductase ProC {Neisseria | 91.03 | |
| d1t2da1 | 150 | Lactate dehydrogenase {Malaria parasite (Plasmodiu | 90.94 | |
| d1guza1 | 142 | Malate dehydrogenase {Chlorobium vibrioforme [TaxI | 90.93 | |
| d1i0za1 | 160 | Lactate dehydrogenase {Human (Homo sapiens), heart | 90.8 | |
| d2pgda1 | 297 | 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ov | 90.63 | |
| d1wmaa1 | 275 | Carbonyl reductase/20beta-hydroxysteroid dehydroge | 90.4 | |
| d1geea_ | 261 | Glucose dehydrogenase {Bacillus megaterium [TaxId: | 90.14 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 90.12 | |
| d1llda1 | 143 | Lactate dehydrogenase {Bifidobacterium longum, str | 90.1 | |
| d2o23a1 | 248 | Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho | 89.58 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 89.58 | |
| d1g0oa_ | 272 | 1,3,8-trihydroxynaphtalene reductase (THNR, naphto | 89.56 | |
| d1e5da1 | 152 | Rubredoxin oxygen:oxidoreductase (ROO), C-terminal | 89.34 | |
| d1xu9a_ | 269 | 11-beta-hydroxysteroid dehydrogenase 1 {Human (Hom | 89.28 | |
| d1j5pa4 | 132 | Hypothetical protein TM1643 {Thermotoga maritima [ | 89.2 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 89.08 | |
| d2ew8a1 | 247 | (s)-1-phenylethanol dehydrogenase {Azoarcus sp. eb | 89.08 | |
| d2ldxa1 | 159 | Lactate dehydrogenase {Mouse (Mus musculus) [TaxId | 88.88 | |
| d1ycga1 | 149 | Nitric oxide reductase C-terminal domain {Moorella | 88.76 | |
| d2ag5a1 | 245 | Dehydrogenase/reductase SDR family member 6, DHRS6 | 88.73 | |
| d1u8xx1 | 167 | Maltose-6'-phosphate glucosidase GlvA {Bacillus su | 88.65 | |
| d1d1ta2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 88.46 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 88.39 | |
| d1x1ta1 | 260 | D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas | 88.28 | |
| d2q46a1 | 252 | Hypothetical protein At5g02240 (T7H20_290) {Thale | 88.21 | |
| d1uzma1 | 237 | beta-keto acyl carrier protein reductase {Mycobact | 88.11 | |
| d1up7a1 | 162 | 6-phospho-beta-glucosidase {Thermotoga maritima [T | 88.04 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 87.86 | |
| d1ja9a_ | 259 | 1,3,6,8-tetrahydroxynaphthalene reductase {Rice bl | 87.8 | |
| d1vkna1 | 176 | N-acetyl-gamma-glutamyl-phosphate reductase ArgC { | 87.56 | |
| d1y1pa1 | 342 | Aldehyde reductase II {Sporobolomyces salmonicolor | 87.34 | |
| d1o5ia_ | 234 | beta-keto acyl carrier protein reductase {Thermoto | 87.21 | |
| d2ahra1 | 104 | Pyrroline-5-carboxylate reductase ProC {Streptococ | 87.16 | |
| d5nula_ | 138 | Flavodoxin {Clostridium beijerinckii [TaxId: 1520] | 87.15 | |
| d1qsga_ | 258 | Enoyl-ACP reductase {Escherichia coli [TaxId: 562] | 86.97 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 86.69 | |
| d1t4ba1 | 146 | Aspartate beta-semialdehyde dehydrogenase {Escheri | 86.36 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 86.26 | |
| d1qyda_ | 312 | Pinoresinol-lariciresinol reductase {Giant arborvi | 85.65 | |
| d2nu7a1 | 119 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 84.94 | |
| d1oaaa_ | 259 | Sepiapterin reductase {Mouse (Mus musculus) [TaxId | 84.92 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 84.89 | |
| d1dlja3 | 108 | UDP-glucose dehydrogenase (UDPGDH), C-terminal (UD | 84.71 | |
| d2cmda1 | 145 | Malate dehydrogenase {Escherichia coli [TaxId: 562 | 84.3 | |
| d1yo6a1 | 250 | Putative carbonyl reductase sniffer {Caenorhabditi | 84.07 | |
| d1hyea1 | 145 | MJ0490, lactate/malate dehydrogenase {Archaeon Met | 84.03 | |
| d1oi7a1 | 121 | Succinyl-CoA synthetase, alpha-chain, N-terminal ( | 83.8 | |
| d2fzwa2 | 176 | Alcohol dehydrogenase {Human (Homo sapiens), diffe | 83.39 | |
| d2hjsa1 | 144 | Usg-1 protein homolog PA3116 {Pseudomonas aerugino | 83.1 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 82.51 | |
| d1mxha_ | 266 | Dihydropteridin reductase (pteridine reductase) {T | 82.01 | |
| d2jhfa2 | 176 | Alcohol dehydrogenase {Horse (Equus caballus) [Tax | 81.62 | |
| d1bg6a1 | 172 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 81.51 | |
| d1mb4a1 | 147 | Aspartate beta-semialdehyde dehydrogenase {Vibrio | 81.42 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 81.41 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 80.76 | |
| d1gz6a_ | 302 | (3R)-hydroxyacyl-CoA dehydrogenase domain of estra | 80.47 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 80.22 |
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.7e-34 Score=224.61 Aligned_cols=152 Identities=35% Similarity=0.564 Sum_probs=147.3
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.++|++|+++||+|++|||++++.+.+.+.+...+.++.|+++++|+||+|||++.++++|+.+.+++.+.+.+|++
T Consensus 10 ~MG~~~A~~L~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~d~ii~~v~~~~~v~~v~~~~~~~~~~~~~g~i 89 (161)
T d1vpda2 10 IMGKPMSKNLLKAGYSLVVSDRNPEAIADVIAAGAETASTAKAIAEQCDVIITMLPNSPHVKEVALGENGIIEGAKPGTV 89 (161)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECSSHHHHHHHCSEEEECCSSHHHHHHHHHSTTCHHHHCCTTCE
T ss_pred HHHHHHHHHHHHCCCeEEEEeCCcchhHHHHHhhhhhcccHHHHHhCCCeEEEEcCCHHHHHHHHhCCcchhhccCCCCE
Confidence 49999999999999999999999999999999999999999999999999999999999999999887789999999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
|||+||++|.+++++++.+.+++++|+|+|++|++..+..|++++|+||+++.+++++++|+.++.+++|+|
T Consensus 90 iid~sT~~p~~~~~~~~~~~~~g~~~vdapv~gg~~~a~~g~l~~~~gG~~~~~~~~~~il~~~~~~i~~~G 161 (161)
T d1vpda2 90 LIDMSSIAPLASREISDALKAKGVEMLDAPVSGGEPKAIDGTLSVMVGGDKAIFDKYYDLMKAMAGSVVHTG 161 (161)
T ss_dssp EEECSCCCHHHHHHHHHHHHTTTCEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHHHHHHTTEEEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHcCCceecccccCChhHHhcCCeEEEEcCCHHHHHHHHHHHHHhcCceEECC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
|
| >d3cuma2 c.2.1.6 (A:1-162) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=100.00 E-value=7.8e-33 Score=217.13 Aligned_cols=152 Identities=43% Similarity=0.653 Sum_probs=146.8
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||++||++|+++||+|.+|||++++.+.+.+.+.....++.|+++.+|+|++|||+++++++|+...+++.+.+.+|++
T Consensus 11 ~MG~~iA~~L~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~~~e~~~~~diii~~v~~~~~~~~v~~~~~~~~~~l~~g~i 90 (162)
T d3cuma2 11 HMGAPMATNLLKAGYLLNVFDLVQSAVDGLVAAGASAARSARDAVQGADVVISMLPASQHVEGLYLDDDGLLAHIAPGTL 90 (162)
T ss_dssp TTHHHHHHHHHHTTCEEEEECSSHHHHHHHHHTTCEECSSHHHHHTSCSEEEECCSCHHHHHHHHHSTTCHHHHSCTTCE
T ss_pred HHHHHHHHHHHHCCCeEEEEECchhhhhhhhhhhccccchhhhhccccCeeeecccchhhHHHHHhccccccccCCCCCE
Confidence 49999999999999999999999999999999999999999999999999999999999999999877788889999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
|||+||++|.+++++.+.+.++|+.|+|+|++|+|..+..|++++|+||+++.+++++++|+.++++++|+|
T Consensus 91 iid~st~~p~~~~~~~~~~~~~gi~~~dapv~Gg~~~a~~G~l~~~~gG~~~~~~~~~~il~~~~~~v~~~G 162 (162)
T d3cuma2 91 VLECSTIAPTSARKIHAAARERGLAMLDAPVSGGTAGAAAGTLTFMVGGDAEALEKARPLFEAMGRNIFHAG 162 (162)
T ss_dssp EEECSCCCHHHHHHHHHHHHHTTCEEEECCEESCHHHHHHTCEEEEEESCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred EEECCCCCHHHHHHHHHHHHHCCCcEEecccccCccccccCCeEEEecCCHHHHHHHHHHHHHHcCccEECc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
|
| >d2pgda2 c.2.1.6 (A:1-176) 6-phosphogluconate dehydrogenase {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=99.96 E-value=2.8e-29 Score=199.38 Aligned_cols=144 Identities=18% Similarity=0.262 Sum_probs=132.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC--------cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA--------NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~--------~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
||++||++|+++||+|++|||++++++++.+.+. ....++.+++..+|++|+|+|+++++.++.. ++.+
T Consensus 13 MG~~mA~~L~~~G~~V~v~dr~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ii~~~~~~~~v~~v~~---~l~~ 89 (176)
T d2pgda2 13 MGQNLILNMNDHGFVVCAFNRTVSKVDDFLANEAKGTKVLGAHSLEEMVSKLKKPRRIILLVKAGQAVDNFIE---KLVP 89 (176)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSTHHHHHHHHTTTTTSSCEECSSHHHHHHHBCSSCEEEECSCTTHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHCCCeEEEEcCCHHHHHHHHHhccccccccchhhhhhhhhhhcccceEEEecCchHHHHHHHH---HHHh
Confidence 8999999999999999999999999999987643 3345566778899999999999999999987 4888
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeE
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIV 149 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~ 149 (286)
.+++|++|||+||+.|.+++++.+.+.++|+.|+|+|++|++..+..|+ ++|+||+++.+++++|+|+.++.++.
T Consensus 90 ~~~~g~iiid~sT~~~~~~~~~~~~~~~~g~~~ldapvsGg~~~A~~G~-~~~~gG~~~~~~~~~~il~~~~~kv~ 164 (176)
T d2pgda2 90 LLDIGDIIIDGGNSEYRDTMRRCRDLKDKGILFVGSGVSGGEDGARYGP-SLMPGGNKEAWPHIKAIFQGIAAKVG 164 (176)
T ss_dssp HCCTTCEEEECSCCCHHHHHHHHHHHHHTTCEEEEEEEESHHHHHHHCC-EEEEEECTTTHHHHHHHHHHHSCBCT
T ss_pred ccccCcEEEecCcchhHHHHHHHHHHHhcCCceeccccccCcccccCCc-EEEcCCCHHHHHHHHHHHHHHhcccC
Confidence 9999999999999999999999999999999999999999999999998 89999999999999999999998864
|
| >d3cuma1 a.100.1.1 (A:163-296) Hydroxyisobutyrate dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1.8e-27 Score=180.18 Aligned_cols=133 Identities=47% Similarity=0.825 Sum_probs=124.9
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccch
Q psy764 153 DSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKIS 232 (286)
Q Consensus 153 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 232 (286)
|.|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.++++||.++.+.+.....+..+..++|.++|++.
T Consensus 1 P~GsG~~~Kl~~N~l~~~~~~a~aEal~la~~~Gld~~~~~eil~~~~g~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 80 (134)
T d3cuma1 1 PDGAGQVAKVCNNQLLAVLMIGTAEAMALGVANGLEAKVLAEIMRRSSGGNWALEVYNPWPGVMENAPASRDYSGGFMAQ 80 (134)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTSTTCCHHHHHCCCSTTSSTTSGGGGTTCSSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHhcccchhhhhhhhhhhhccchhhhcCCCCCCcchH
Confidence 57999999999999999999999999999999999999999999999999999988777655555666788999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 233 LLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 233 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
++.||++++.+++++.|+|+|+++.+.++|+.+.++|+|++|+++|++++++.
T Consensus 81 l~~KDl~l~~~~a~~~g~~~p~~~~a~~~~~~a~~~G~g~~D~s~i~~~~e~~ 133 (134)
T d3cuma1 81 LMAKDLGLAQEAAQASASSTPMGSLALSLYRLLLKQGYAERDFSVVQKLFDPT 133 (134)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGGHHHHCTT
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999864
|
| >d2cvza2 c.2.1.6 (A:2-157) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.95 E-value=4.9e-28 Score=188.39 Aligned_cols=147 Identities=27% Similarity=0.456 Sum_probs=132.0
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.||.+||+||.++||.+ +|||++++..++.+.+..... ..+.+.++|++|+++|++.++..+.. ++.+.+.++++
T Consensus 10 ~MG~~ma~~L~~~g~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~v~~~~~---~l~~~~~~~~~ 84 (156)
T d2cvza2 10 AMGYPMAGHLARRFPTL-VWNRTFEKALRHQEEFGSEAV-PLERVAEARVIFTCLPTTREVYEVAE---ALYPYLREGTY 84 (156)
T ss_dssp TTHHHHHHHHHTTSCEE-EECSSTHHHHHHHHHHCCEEC-CGGGGGGCSEEEECCSSHHHHHHHHH---HHTTTCCTTEE
T ss_pred HHHHHHHHHHHhCCCEE-EEeCCHHHHHHHHHHcCCccc-ccccccceeEEEecccchhhhhhhhc---ccccccccccc
Confidence 49999999999999855 799999988888776554444 45666789999999999988887775 48888999999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
+||+||++|.+++++++.+.++|++|+|+||+|++..+.+|++++|+||+++.+++++|+| .++++++|+||
T Consensus 85 iid~sT~~p~~~~~~~~~~~~~gi~~ldapVsGg~~~A~~G~L~~~vgG~~~~~~~~~p~L-~~~~~v~~~GP 156 (156)
T d2cvza2 85 WVDATSGEPEASRRLAERLREKGVTYLDAPVSGGTSGAEAGTLTVMLGGPEEAVERVRPFL-AYAKKVVHVGP 156 (156)
T ss_dssp EEECSCCCHHHHHHHHHHHHTTTEEEEECCEESHHHHHHHTCEEEEEESCHHHHHHHGGGC-TTEEEEEEEES
T ss_pred ccccccCCHHHHHHHHHHHHHcCCeEEeccccCchhhhccCCEEEEEeCCHHHHHHHHHHH-HhcCcCEEeCc
Confidence 9999999999999999999999999999999999999999999999999999999999999 59999999986
|
| >d1vpda1 a.100.1.1 (A:164-296) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=8.2e-27 Score=176.13 Aligned_cols=126 Identities=25% Similarity=0.398 Sum_probs=118.7
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccch
Q psy764 153 DSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKIS 232 (286)
Q Consensus 153 ~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~ 232 (286)
++|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.|+.++.+.| ++.+++|.|+|+++
T Consensus 1 dvG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gid~~~~~~~l~~~~~~S~~~~~~~~-------~~~~~~~~~~f~~~ 73 (133)
T d1vpda1 1 DIGAGNVTKLANQVIVALNIAAMSEALTLATKAGVNPDLVYQAIRGGLAGSTVLDAKAP-------MVMDRNFKPGFRID 73 (133)
T ss_dssp STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCCHHHHHHHH-------HHHTTCCCCSSBHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhccccchhhhhccc-------hhhhccCCCCchHH
Confidence 47999999999999999999999999999999999999999999999999999877654 23478999999999
Q ss_pred hHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 233 LLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 233 ~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
++.||++++.+++++.|+|+|+++.+.++|+.+.++|+|++|+++|++++++.
T Consensus 74 l~~KDl~l~~~~a~~~~~~~p~~~~~~~~~~~a~~~G~~~~D~s~i~~~~~~~ 126 (133)
T d1vpda1 74 LHIKDLANALDTSHGVGAQLPLTAAVMEMMQALRADGHGNDDHSALACYYEKL 126 (133)
T ss_dssp HHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHTTCTTSBGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999863
|
| >d2cvza1 a.100.1.1 (A:158-289) Hydroxyisobutyrate dehydrogenase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: Hydroxyisobutyrate dehydrogenase species: Thermus thermophilus [TaxId: 274]
Probab=99.93 E-value=2.9e-26 Score=172.92 Aligned_cols=126 Identities=29% Similarity=0.362 Sum_probs=117.5
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchh
Q psy764 154 SGNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISL 233 (286)
Q Consensus 154 ~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~ 233 (286)
+|+|+.+|+++|++.+.++.+++|++.++++.|+|+++++++++.+++.|+.++.+.| ..+.+++|.|+|++++
T Consensus 1 VG~g~~~Kl~nN~l~~~~~~~~aEal~la~~~Gld~~~~~~vl~~s~~~s~~~~~~~p------~~~~~~~~~~~f~~~~ 74 (132)
T d2cvza1 1 VGAGHAVKAINNALLAVNLWAAGEGLLALVKQGVSAEKALEVINASSGRSNATENLIP------QRVLTRAFPKTFALGL 74 (132)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHTTSTTCBHHHHHTHH------HHTTTSCCCCSSBHHH
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhhhhhhhhhhhh------HHHHHHhhhhhhHHHH
Confidence 5899999999999999999999999999999999999999999999999988765443 2345889999999999
Q ss_pred HHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhhc
Q psy764 234 LAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKNK 285 (286)
Q Consensus 234 ~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~~ 285 (286)
+.||++++.+++++.|+|+|+.+.+.++|+.+.+.|+|++|+++|++++++.
T Consensus 75 ~~KDl~l~~~~a~~~g~~~pl~~~~~~~~~~a~~~g~~~~D~s~i~~~~e~~ 126 (132)
T d2cvza1 75 LVKDLGIAMGVLDGEKAPSPLLRLAREVYEMAKRELGPDADHVEALRLLERW 126 (132)
T ss_dssp HHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHCTTSBGGGGHHHHHHH
T ss_pred HhhHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999874
|
| >d1pgja2 c.2.1.6 (A:1-178) 6-phosphogluconate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 6-phosphogluconate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=99.93 E-value=4e-26 Score=181.37 Aligned_cols=152 Identities=17% Similarity=0.267 Sum_probs=135.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc--------cCCHH---HHhhcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM--------ALSLS---TLASGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~--------~~s~~---e~~~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||.+||++|+++||+|++|||++++.+++.+.+... ..+.. ..+..++.++++++....++.++..
T Consensus 12 MG~~ma~~L~~~G~~V~~~dr~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 88 (178)
T d1pgja2 12 MGANLALNIAEKGFKVAVFNRTYSKSEEFMKANASAPFAGNLKAFETMEAFAASLKKPRKALILVQAGAATDSTIEQ--- 88 (178)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHTTTSTTGGGEEECSCHHHHHHHBCSSCEEEECCCCSHHHHHHHHH---
T ss_pred HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHcCCccccccchhhhhhhhHHHHhcccceEEEEeecCcchhhhhhhh---
Confidence 899999999999999999999999999998776432 22333 3345788999999988888888864
Q ss_pred ccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeE-
Q psy764 71 ILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIV- 149 (286)
Q Consensus 71 l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~- 149 (286)
+...+.++++++|+||..|..++++.+.+.++++.|+|+|++|++..+..|+ ++|+||+++.+++++|+|+.++.++.
T Consensus 89 ~~~~~~~~~iii~~st~~~~~~~~~~~~l~~~~~~~ldapv~g~~~~a~~g~-~~mvgG~~~~~~~v~pil~~~~~~~~~ 167 (178)
T d1pgja2 89 LKKVFEKGDILVDTGNAHFKDQGRRAQQLEAAGLRFLGMGISGGEEGARKGP-AFFPGGTLSVWEEIRPIVEAAAAKADD 167 (178)
T ss_dssp HHHHCCTTCEEEECCCCCHHHHHHHHHHHHTTTCEEEEEEEESHHHHHHHCC-EEEEEECHHHHHHHHHHHHHHSCBCTT
T ss_pred hhhhccccceecccCccchhHHHHHHHHHhhcceeEecccccCCcchhcCCc-EEEeeCCHHHHHHHHHHHHHHhccccC
Confidence 7778899999999999999999999999999999999999999999999998 89999999999999999999999888
Q ss_pred ---ecCCcchH
Q psy764 150 ---HCGDSGNG 157 (286)
Q Consensus 150 ---~~g~~g~a 157 (286)
|+|+.|+|
T Consensus 168 ~~~~~g~~G~G 178 (178)
T d1pgja2 168 GRPCVTMNGSG 178 (178)
T ss_dssp SCBSCCCCCST
T ss_pred CCCccCCCCCC
Confidence 99998875
|
| >d1i36a2 c.2.1.6 (A:1-152) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.87 E-value=2.4e-22 Score=155.13 Aligned_cols=140 Identities=18% Similarity=0.191 Sum_probs=115.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+++|++|.++||+|++||+++++...+...++.+..++.|++++||+||+|||++...+.+.. ..+. .++++
T Consensus 11 mG~~ia~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~diIi~~v~~~~~~~~~~~----~~~~--~~~~~ 84 (152)
T d1i36a2 11 VAQTLASRLRSRGVEVVTSLEGRSPSTIERARTVGVTETSEEDVYSCPVVISAVTPGVALGAARR----AGRH--VRGIY 84 (152)
T ss_dssp HHHHHHHHHHHTTCEEEECCTTCCHHHHHHHHHHTCEECCHHHHHTSSEEEECSCGGGHHHHHHH----HHTT--CCSEE
T ss_pred HHHHHHHHHHHCCCeEEEEcCchhHHHHHhhhcccccccHHHHHhhcCeEEEEecCchHHHHHHh----hccc--CCcee
Confidence 89999999999999999999998887777777777888999999999999999997655444432 3333 47899
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
||+||.+|.+++++++.+++. .|+|+|++|++..+..++..++.|++.+.+++ |+.+|.++.++|+
T Consensus 85 id~st~~p~~~~~l~~~~~~~--~~~d~~v~g~~~~~~~~~~~~~~G~~~~~~~~----l~~~g~~i~~~G~ 150 (152)
T d1i36a2 85 VDINNISPETVRMASSLIEKG--GFVDAAIMGSVRRKGADIRIIASGRDAEEFMK----LNRYGLNIEVRGR 150 (152)
T ss_dssp EECSCCCHHHHHHHHHHCSSS--EEEEEEECSCHHHHGGGCEEEEESTTHHHHHG----GGGGTCEEEECSS
T ss_pred eccCcCCHHHHHHHHHHHhcc--CCCcccccCCcccccCCcEEEEECCCHHHHHH----HHHcCCeeeEcCC
Confidence 999999999999999887654 49999999999999888865555555555543 7889999999985
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=99.78 E-value=8.6e-19 Score=136.76 Aligned_cols=147 Identities=19% Similarity=0.217 Sum_probs=113.3
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC-cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA-NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~-~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
+||+++|++|.++||+|++|||++++.+++.+.|. ....+..++++++|+||+|+|. .++++++.+ +.+.+++++
T Consensus 10 ~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a~~~~~~~~~~~~~~~~~~~DiIilavp~-~~~~~vl~~---l~~~l~~~~ 85 (165)
T d2f1ka2 10 LIGASLAGDLRRRGHYLIGVSRQQSTCEKAVERQLVDEAGQDLSLLQTAKIIFLCTPI-QLILPTLEK---LIPHLSPTA 85 (165)
T ss_dssp HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTSCSEEESCGGGGTTCSEEEECSCH-HHHHHHHHH---HGGGSCTTC
T ss_pred HHHHHHHHHHHHCCCEEEEEECCchHHHHHHHhhccceeeeecccccccccccccCcH-hhhhhhhhh---hhhhccccc
Confidence 38999999999999999999999999998888874 3444566788999999999995 688999875 888899999
Q ss_pred EEEEcCCCCchHHHHHHHHHHhc-CCceEeccCCCCHHhhh----cCceEEEe---cCCHhhHHHHHHHHHHhcCCeEec
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREK-QITFLDAPVSGGTKAAQ----EATLTFMV---GGDKSSLEKAKPILKCMGRNIVHC 151 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~-g~~~~~~pv~g~~~~a~----~g~l~~~~---gg~~~~~~~~~~ll~~~g~~v~~~ 151 (286)
+|+|+++..+...+.+.+..... +.+.+..|...++..+. .+...+++ +++++.++.++++|+.+|.+++++
T Consensus 86 iv~~~~s~~~~~~~~~~~~~~~~~~~h~~~~~~~~g~~~a~~~l~~~~~~il~~~~~~~~~~~~~v~~l~~~lG~~v~~c 165 (165)
T d2f1ka2 86 IVTDVASVKTAIAEPASQLWSGFIGGHPMAGTAAQGIDGAEENLFVNAPYVLTPTEYTDPEQLACLRSVLEPLGVKIYLC 165 (165)
T ss_dssp EEEECCSCCHHHHHHHHHHSTTCEEEEECCCCSCSSGGGCCTTTTTTCEEEEEECTTCCHHHHHHHHHHHGGGTCEEEEC
T ss_pred ceeeccccchHHHHHHHHhhcccccceeeecccccchhhhcccccCCCeEEEEeCCCCCHHHHHHHHHHHHHhCCEEEeC
Confidence 99999999877776655443211 22344445555555443 23334443 778999999999999999998764
|
| >d2i76a2 c.2.1.6 (A:2-154) Hypothetical protein TM1727 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM1727 species: Thermotoga maritima [TaxId: 2336]
Probab=99.77 E-value=3.2e-20 Score=143.18 Aligned_cols=142 Identities=12% Similarity=0.055 Sum_probs=111.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||++|+++|.+.++.+.+|||++++.+++.+.+...+.++.|+++++|+||+|||+ +++.+++.+ +. .++++|
T Consensus 10 mg~~l~~~L~~~~~~~~v~~R~~~~~~~l~~~~~~~~~~~~~~~~~~DiVil~v~d-~~i~~v~~~---l~---~~~~iv 82 (153)
T d2i76a2 10 LTRFFLECLKDRYEIGYILSRSIDRARNLAEVYGGKAATLEKHPELNGVVFVIVPD-RYIKTVANH---LN---LGDAVL 82 (153)
T ss_dssp HHHHHHHTTC----CCCEECSSHHHHHHHHHHTCCCCCSSCCCCC---CEEECSCT-TTHHHHHTT---TC---CSSCCE
T ss_pred HHHHHHHHHHhCCCEEEEEeCChhhhcchhhcccccccchhhhhccCcEEEEeccc-hhhhHHHhh---hc---ccceee
Confidence 89999999977555567999999999999998877788999999999999999996 578888874 42 478999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhcCCeEecCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
||+|+..|....+ .....+.+++.+|..+++..+..+..+++++||++.++.++++|+.+|.+++++++
T Consensus 83 i~~s~~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~~~~~~~l~~~lG~~~~~i~~ 151 (153)
T d2i76a2 83 VHCSGFLSSEIFK---KSGRASIHPNFSFSSLEKALEMKDQIVFGLEGDERGLPIVKKIAEEISGKYFVIPS 151 (153)
T ss_dssp EECCSSSCGGGGC---SSSEEEEEECSCC--CTTGGGCGGGCCEEECCCTTTHHHHHHHHHHHCSCEEECCG
T ss_pred eecccchhhhhhh---hhccccceeeeecccccchhhhccCcEEEEeCCHHHHHHHHHHHHHHCCcEEEeCC
Confidence 9999988765432 22334567778888888777777777899999999999999999999999999864
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=99.70 E-value=3.6e-17 Score=125.63 Aligned_cols=130 Identities=15% Similarity=0.189 Sum_probs=107.3
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
+||++||++|.++||+|.+|||++... ..+.++++|++++|+|. .++..++.. +.+.++++++
T Consensus 20 ~mG~~la~~L~~~G~~V~~~d~~~~~~-------------~~~~~~~~~~v~~~~~~-~~~~~v~~~---~~~~~~~~~i 82 (152)
T d2pv7a2 20 KLGGLFARYLRASGYPISILDREDWAV-------------AESILANADVVIVSVPI-NLTLETIER---LKPYLTENML 82 (152)
T ss_dssp HHHHHHHHHHHTTTCCEEEECTTCGGG-------------HHHHHTTCSEEEECSCG-GGHHHHHHH---HGGGCCTTSE
T ss_pred HHHHHHHHHHHHcCCCcEecccccccc-------------cchhhhhccccccccch-hhheeeeec---ccccccCCce
Confidence 389999999999999999999987643 34567899999999995 566777764 7888899999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCCHHhhhcCceEEEe-cCCHhhHHHHHHHHHHhcCCeEe
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGGTKAAQEATLTFMV-GGDKSSLEKAKPILKCMGRNIVH 150 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~~~~a~~g~l~~~~-gg~~~~~~~~~~ll~~~g~~v~~ 150 (286)
|+|+||+++...+++.+.. ..+|+ .+|++|+......+...+++ +++.+.++++.++|+.+|.+++.
T Consensus 83 iiD~~Svk~~~~~~~~~~~---~~~~v~~hP~~Gp~~~~~~g~~~v~~~g~~~~~~~~~~~ll~~~Ga~v~e 151 (152)
T d2pv7a2 83 LADLTSVKREPLAKMLEVH---TGAVLGLHPMFGADIASMAKQVVVRCDGRFPERYEWLLEQIQIWGAKIYQ 151 (152)
T ss_dssp EEECCSCCHHHHHHHHHHC---SSEEEEEEECSCTTCSCCTTCEEEEEEEECGGGTHHHHHHHHHTTCEEEE
T ss_pred EEEecccCHHHHHHHHHHc---cCCEEEecccCCCcccccCCcEEEEecCCCHHHHHHHHHHHHHhCCEEEe
Confidence 9999999999888876543 33566 57999988887777655555 77888999999999999998875
|
| >d2b0ja2 c.2.1.6 (A:1-242) 5,10-methenyltetrahydromethanopterin hydrogenase, HMD {Archaeon Methanocaldococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: 5,10-methenyltetrahydromethanopterin hydrogenase, HMD species: Archaeon Methanocaldococcus jannaschii [TaxId: 2190]
Probab=99.69 E-value=7.1e-17 Score=131.70 Aligned_cols=139 Identities=11% Similarity=0.066 Sum_probs=116.8
Q ss_pred HHHhCCCcEEEEcCCchHH-HHHHH------------------------------------cCCcccCCHHHHhhcCcEE
Q psy764 9 FLQFQGHDVIVYDKNTDAS-QTLAK------------------------------------EGANMALSLSTLASGAEFI 51 (286)
Q Consensus 9 ~L~~~G~~V~~~dr~~~~~-~~l~~------------------------------------~g~~~~~s~~e~~~~adiv 51 (286)
+|++.|+.|++.|.+++++ +.+.+ .|+++++|+.|+++++|+|
T Consensus 66 ~fa~~g~~v~~~d~d~~~v~~~~~~g~~~i~~p~l~~~v~~~~~~~~~~~~~~~~~~~pEe~Gv~v~~d~~Eav~~ADiI 145 (242)
T d2b0ja2 66 CFAEEPGLVVIDEFDPKEVMEAHLSGNPESIMPKIREVVKAKAKELPKPPKACIHLVHPEDVGLKVTSDDREAVEGADIV 145 (242)
T ss_dssp GGGSSSEEEECCCSCHHHHHHHHHTTCGGGTHHHHHHHHHHHHHTSCCTTTEEEESSCGGGGTCEEESCHHHHHTTCSEE
T ss_pred hhhhcCCeEEEEeCCHHHHHHHHhcCCchhhcchHHHHHHHHHHhccCCccchhhcCCHHHCCCEEECCHHHHHhcCCeE
Confidence 5788999999999997653 32222 2467789999999999999
Q ss_pred EEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCH
Q psy764 52 ISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDK 131 (286)
Q Consensus 52 i~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~ 131 (286)
|+|||+++.+++++.+ +.+.+++|.+|+|+||++|....++.+.+.+++++|++.+.+++|. ...+.+.++.++++
T Consensus 146 I~~vP~~~~v~~Vi~~---I~~~l~~g~Iiid~STi~~~~~~~l~e~l~~kgi~vi~~hp~a~pe-~~g~~li~~~~ase 221 (242)
T d2b0ja2 146 ITWLPKGNKQPDIIKK---FADAIPEGAIVTHACTIPTTKFAKIFKDLGREDLNITSYHPGCVPE-MKGQVYIAEGYASE 221 (242)
T ss_dssp EECCTTCTTHHHHHHH---HGGGSCTTCEEEECSSSCHHHHHHHHHHTTCTTSEEEECBCSSCTT-TCCCEEEEESSSCH
T ss_pred EEeeecHHHHHHHHHH---HHhhCCCCcEEEecCCCcHHHHHHHHHhcccCCCEEECCCccCcCc-cccceEEecCCCCH
Confidence 9999998889999974 9999999999999999999999999999998999999876666553 44456667778899
Q ss_pred hhHHHHHHHHHHhcCCeEec
Q psy764 132 SSLEKAKPILKCMGRNIVHC 151 (286)
Q Consensus 132 ~~~~~~~~ll~~~g~~v~~~ 151 (286)
+.++++.++|+.+|++++.+
T Consensus 222 E~iekv~elles~Gk~~~vv 241 (242)
T d2b0ja2 222 EAVNKLYEIGKIARGKAFKM 241 (242)
T ss_dssp HHHHHHHHHHHHHHSCEEEE
T ss_pred HHHHHHHHHHHHHCCCeEeC
Confidence 99999999999999988764
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.61 E-value=6e-15 Score=115.16 Aligned_cols=144 Identities=16% Similarity=0.221 Sum_probs=111.7
Q ss_pred CccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHcCCc--ccCCHHHH-hhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 1 MISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKEGAN--MALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~--~~~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
+||+++|++|.++|+ +|++|||+++..+.+.+.|.. ...+..+. ..++|+||+|+| ++++.+++.. +.+.+
T Consensus 11 ~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~dlIila~p-~~~~~~vl~~---l~~~~ 86 (171)
T d2g5ca2 11 FMGGSFAKSLRRSGFKGKIYGYDINPESISKAVDLGIIDEGTTSIAKVEDFSPDFVMLSSP-VRTFREIAKK---LSYIL 86 (171)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHTTSCSEEESCGGGGGGTCCSEEEECSC-HHHHHHHHHH---HHHHS
T ss_pred HHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHHhhcchhhhhhhhhhhccccccccccCC-chhhhhhhhh---hhccc
Confidence 489999999999996 789999999999988888752 34455444 358999999999 5778888874 88889
Q ss_pred CCCCEEEEcCCCCchHHHHHHHHHHhcCCceE-eccCCCC----HHhhh----cCceEEEe---cCCHhhHHHHHHHHHH
Q psy764 76 KPGVIVIDSSTVDPQVPQTLSNLAREKQITFL-DAPVSGG----TKAAQ----EATLTFMV---GGDKSSLEKAKPILKC 143 (286)
Q Consensus 76 ~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~-~~pv~g~----~~~a~----~g~l~~~~---gg~~~~~~~~~~ll~~ 143 (286)
+++.+|+|++++.....+.+.+.+.++ |+ .+|+.|+ +..+. .|...+++ +.+++.++.++++|+.
T Consensus 87 ~~~~ii~d~~s~k~~~~~~~~~~~~~~---~i~~hPm~G~e~sG~~~a~~~Lf~g~~~il~p~~~~~~~~~~~v~~~~~~ 163 (171)
T d2g5ca2 87 SEDATVTDQGSVKGKLVYDLENILGKR---FVGGHPIAGTEKSGVEYSLDNLYEGKKVILTPTKKTDKKRLKLVKRVWED 163 (171)
T ss_dssp CTTCEEEECCSCCTHHHHHHHHHHGGG---EECEEEECCCSCCSGGGCCSSTTTTCEEEECCCSSSCHHHHHHHHHHHHH
T ss_pred cccccccccccccHHHHHHHHHhhccc---ccccccccccccccHHHHHHHhhCCCeEEEecCCCCCHHHHHHHHHHHHH
Confidence 999999999999998888887766543 44 4577664 43332 35545555 3478899999999999
Q ss_pred hcCCeEec
Q psy764 144 MGRNIVHC 151 (286)
Q Consensus 144 ~g~~v~~~ 151 (286)
+|.++.++
T Consensus 164 lG~~v~~M 171 (171)
T d2g5ca2 164 VGGVVEYM 171 (171)
T ss_dssp TTCEEEEC
T ss_pred cCCEEEeC
Confidence 99988764
|
| >d2ahra2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.59 E-value=9.9e-15 Score=111.68 Aligned_cols=136 Identities=13% Similarity=0.181 Sum_probs=101.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||++++++|.++||+|++|+|++++.+.+.+. |+..+.++.+++++||+||+||+ |+++++++.. +.++++
T Consensus 11 mG~al~~~l~~~~~~i~v~~r~~~~~~~l~~~~g~~~~~~~~~~~~~~dvIilavk-p~~~~~vl~~-------l~~~~~ 82 (152)
T d2ahra2 11 MASAIIKGLKQTPHELIISGSSLERSKEIAEQLALPYAMSHQDLIDQVDLVILGIK-PQLFETVLKP-------LHFKQP 82 (152)
T ss_dssp HHHHHHHHHTTSSCEEEEECSSHHHHHHHHHHHTCCBCSSHHHHHHTCSEEEECSC-GGGHHHHHTT-------SCCCSC
T ss_pred HHHHHHHHHHhCCCeEEEEcChHHhHHhhccccceeeechhhhhhhccceeeeecc-hHhHHHHhhh-------ccccee
Confidence 89999999999999999999999999988654 99999999999999999999998 6788888753 567889
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEe-ccCCCCHHhhhcCceEEEecC---CHhhHHHHHHHHHHhcCCeEecC
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLD-APVSGGTKAAQEATLTFMVGG---DKSSLEKAKPILKCMGRNIVHCG 152 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~-~pv~g~~~~a~~g~l~~~~gg---~~~~~~~~~~ll~~~g~~v~~~g 152 (286)
||+..+.. +..++.+.+.. +..++. +|.. +.....|. +.+.++ +++.++.++++|+.+|. ++++.
T Consensus 83 iis~~agi--~~~~l~~~l~~-~~~ivr~mPN~--~~~v~~g~-~~~~~~~~~~~~~~~~v~~l~~~~G~-~~~v~ 151 (152)
T d2ahra2 83 IISMAAGI--SLQRLATFVGQ-DLPLLRIMPNM--NAQILQSS-TALTGNALVSQELQARVRDLTDSFGS-TFDIS 151 (152)
T ss_dssp EEECCTTC--CHHHHHHHHCT-TSCEEEEECCG--GGGGTCEE-EEEEECTTCCHHHHHHHHHHHHTTEE-EEECC
T ss_pred Eecccccc--cHHHHHhhhcc-cccchhhccch--hhhcCccc-eEEEeCCCCCHHHHHHHHHHHHhCCC-EEEec
Confidence 99765433 23445555533 344443 3533 23333444 344444 47889999999999997 55543
|
| >d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: GDP-mannose 6-dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.47 E-value=5e-13 Score=106.90 Aligned_cols=148 Identities=13% Similarity=0.084 Sum_probs=108.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc--------------------CCcccCCHHHHhhcCcEEEEecCChh--
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE--------------------GANMALSLSTLASGAEFIISMLPASQ-- 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~--------------------g~~~~~s~~e~~~~adivi~~v~~~~-- 59 (286)
+|+++|..|+++||+|++||.++++++.+.+. ....+++..+++++||++|+|||+|.
T Consensus 11 vGl~~a~~la~~g~~V~g~D~n~~~i~~ln~g~~p~~e~~~~~~l~~~~~~~~~~~~~~~~~~i~~~d~i~i~VpTP~~~ 90 (202)
T d1mv8a2 11 VGAVCAGCLSARGHEVIGVDVSSTKIDLINQGKSPIVEPGLEALLQQGRQTGRLSGTTDFKKAVLDSDVSFICVGTPSKK 90 (202)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHTTCCSSCCTTHHHHHHHHHHTTCEEEESCHHHHHHTCSEEEECCCCCBCT
T ss_pred hHHHHHHHHHhCCCcEEEEeCCHHHHHHhcccCCcccchhhhhhhhhhhcccccccCCCHHHHHhhCCEEEEecCccccc
Confidence 79999999999999999999999998887642 13567788999999999999999862
Q ss_pred -------HHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhc--------CCceEeccCCCCHHhhh----c
Q psy764 60 -------DVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREK--------QITFLDAPVSGGTKAAQ----E 120 (286)
Q Consensus 60 -------~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~--------g~~~~~~pv~g~~~~a~----~ 120 (286)
.+..+......+.....++++||..||+.|.+++++...+.+. .+.+..+|.+-.+..+. .
T Consensus 91 ~~~~d~~~~~~~~~~i~~~~~~~~~~~liii~STv~pGtt~~~~~~~l~~~~~~~~~~~~~~~~~PE~~~~G~a~~d~~~ 170 (202)
T d1mv8a2 91 NGDLDLGYIETVCREIGFAIREKSERHTVVVRSTVLPGTVNNVVIPLIEDCSGKKAGVDFGVGTNPEFLRESTAIKDYDF 170 (202)
T ss_dssp TSSBCCHHHHHHHHHHHHHHTTCCSCCEEEECSCCCTTHHHHTHHHHHHHHHSCCBTTTBEEEECCCCCCTTSHHHHHHS
T ss_pred cccccchhhhhhhhhhhheeecccCCcceeeccccCCcchhhhhhhhhhccccccccccccchhhhhhhcccchhhhhcC
Confidence 2333333211134456688999999999999999876654322 24567788766554432 2
Q ss_pred CceEEEecC-CHhhHHHHHHHHHHhcCCeEe
Q psy764 121 ATLTFMVGG-DKSSLEKAKPILKCMGRNIVH 150 (286)
Q Consensus 121 g~l~~~~gg-~~~~~~~~~~ll~~~g~~v~~ 150 (286)
.. .+++|+ +++..+.++.+++.+..+++.
T Consensus 171 ~~-~iViG~~~~~~~~~~~~ly~~i~~~ii~ 200 (202)
T d1mv8a2 171 PP-MTVIGELDKQTGDLLEEIYRELDAPIIR 200 (202)
T ss_dssp CS-CEEEEESSHHHHHHHHHHHTTSSSCEEE
T ss_pred CC-eEEEEeCCHHHHHHHHHHHHhcCCCeEe
Confidence 33 356666 578889999999999876654
|
| >d1yqga2 c.2.1.6 (A:1-152) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=99.38 E-value=3.4e-13 Score=103.00 Aligned_cols=134 Identities=16% Similarity=0.182 Sum_probs=95.4
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||++++++|.++| ++|.+|||++++.+.+.+. |+...++.++ ++++|+||+||+ |+++++++.. +. ..++
T Consensus 11 MG~ai~~~l~~~~~~~i~v~~r~~~~~~~l~~~~~~~~~~~~~~-v~~~Div~lavk-P~~~~~v~~~---l~---~~~~ 82 (152)
T d1yqga2 11 MAAAVAGGLVKQGGYRIYIANRGAEKRERLEKELGVETSATLPE-LHSDDVLILAVK-PQDMEAACKN---IR---TNGA 82 (152)
T ss_dssp HHHHHHHHHHHHCSCEEEEECSSHHHHHHHHHHTCCEEESSCCC-CCTTSEEEECSC-HHHHHHHHTT---CC---CTTC
T ss_pred HHHHHHHHHHHCCCCcEEEEeCChhHHHHhhhhccccccccccc-ccccceEEEecC-HHHHHHhHHH---Hh---hccc
Confidence 8999999999887 8999999999999999765 7888877766 467999999999 7899999875 43 3478
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC--CHhhHHHHHHHHHHhcCC
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG--DKSSLEKAKPILKCMGRN 147 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg--~~~~~~~~~~ll~~~g~~ 147 (286)
++|++....+ ...+.+.+.. ...++. .+...|....+|...+..+. +++..+.++++|+.+|..
T Consensus 83 ~viS~~ag~~--~~~l~~~l~~-~~~iir-~mpn~p~~~~~g~t~~~~~~~~~~~~~~~v~~l~~~~G~~ 148 (152)
T d1yqga2 83 LVLSVAAGLS--VGTLSRYLGG-TRRIVR-VMPNTPGKIGLGVSGMYAEAEVSETDRRIADRIMKSVGLT 148 (152)
T ss_dssp EEEECCTTCC--HHHHHHHTTS-CCCEEE-EECCGGGGGTCEEEEEECCTTSCHHHHHHHHHHHHTTEEE
T ss_pred EEeecccCCC--HHHHHHHhCc-CcceEe-ecccchhHhcCCcEEEEeCCCCCHHHHHHHHHHHHhCCCE
Confidence 8887655443 3445555432 222332 12234444555653343333 477889999999999973
|
| >d1n1ea2 c.2.1.6 (A:9-197) Glycerol-3- phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=99.33 E-value=5.5e-13 Score=105.34 Aligned_cols=140 Identities=14% Similarity=0.134 Sum_probs=106.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC--------------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG--------------ANMALSLSTLASGAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g--------------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~ 67 (286)
+|+++|..|+++||+|++|+|+++.++.+.+.+ +.++.++.++++++|+||++||+ +.+++++..
T Consensus 18 wGtAlA~~La~~g~~V~l~~r~~~~~~~i~~~~~n~~yl~~~~l~~~i~~t~~l~~a~~~ad~iiiavPs-~~~~~~~~~ 96 (189)
T d1n1ea2 18 FGTALAMVLSKKCREVCVWHMNEEEVRLVNEKRENVLFLKGVQLASNITFTSDVEKAYNGAEIILFVIPT-QFLRGFFEK 96 (189)
T ss_dssp HHHHHHHHHHTTEEEEEEECSCHHHHHHHHHHTBCTTTSTTCBCCTTEEEESCHHHHHTTCSCEEECSCH-HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCeEEEEEecHHHHHHHhhcccccccccccccccccccchhhhhccCCCCEEEEcCcH-HHHHHHHHH
Confidence 799999999999999999999999999887532 45677899999999999999995 688888864
Q ss_pred Cccccc-----cCCCCCEEEEcCCCC-chHHHHHHHHHHh----cCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHH
Q psy764 68 SDGILK-----HAKPGVIVIDSSTVD-PQVPQTLSNLARE----KQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKA 137 (286)
Q Consensus 68 ~~~l~~-----~l~~g~ivid~st~~-p~~~~~~~~~~~~----~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~ 137 (286)
+.+ .+.++..++.++.+. +.+...+.+.+.+ ..+.++.+|.+..+...+..+..++++-+.+..+++
T Consensus 97 ---~~~~~~~~~~~~~~~ii~~tKGie~~t~~~~seii~e~~~~~~~~vlsGP~~A~Ev~~~~pt~~viAs~~~~~a~~i 173 (189)
T d1n1ea2 97 ---SGGNLIAYAKEKQVPVLVCTKGIERSTLKFPAEIIGEFLPSPLLSVLAGPSFAIEVATGVFTCVSIASADINVARRL 173 (189)
T ss_dssp ---HCHHHHHHHHHHTCCEEECCCSCCTTTCCCHHHHHTTTSCGGGEEEEESSCCHHHHHTTCCEEEEEECSSHHHHHHH
T ss_pred ---HHhhhhhhhccCCcEEEEEECCCccCCccchhhHHHHHhcccceEEEecCCcHHHHHcCCCcEEEEEeCCHHHHHHH
Confidence 332 234677788887654 4443444444433 235577888887777777788778888889999999
Q ss_pred HHHHHHhc
Q psy764 138 KPILKCMG 145 (286)
Q Consensus 138 ~~ll~~~g 145 (286)
+++|++-.
T Consensus 174 ~~lfst~~ 181 (189)
T d1n1ea2 174 QRIMSTGD 181 (189)
T ss_dssp HHHHSCTT
T ss_pred HHHhCCCC
Confidence 99997543
|
| >d1txga2 c.2.1.6 (A:1-180) Glycerol-3- phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Glycerol-3- phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.21 E-value=7.2e-12 Score=98.17 Aligned_cols=143 Identities=17% Similarity=0.137 Sum_probs=99.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC--chHHHHHHHcC-------------CcccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN--TDASQTLAKEG-------------ANMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~--~~~~~~l~~~g-------------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
+|+++|..|+++||+|.+|.|+ ++.++.+.+.+ +...+++.++++++|+||++||. +.+++++.
T Consensus 11 ~GtalA~~la~~g~~V~l~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ad~Ii~avps-~~~~~~~~ 89 (180)
T d1txga2 11 MGSALSVPLVDNGNEVRIWGTEFDTEILKSISAGREHPRLGVKLNGVEIFWPEQLEKCLENAEVVLLGVST-DGVLPVMS 89 (180)
T ss_dssp HHHHHHHHHHHHCCEEEEECCGGGHHHHHHHHTTCCBTTTTBCCCSEEEECGGGHHHHHTTCSEEEECSCG-GGHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEEecccHHHHHHHhhhhhhhhhcchhccccccccccHHHHHhccchhhcccch-hhhHHHHH
Confidence 7999999999999999999884 45566665432 24467889999999999999994 78999998
Q ss_pred CCccccccCCCCCEEEEcCCCCchHH--HHHHHHHHh------cCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHH
Q psy764 67 GSDGILKHAKPGVIVIDSSTVDPQVP--QTLSNLARE------KQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAK 138 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~st~~p~~~--~~~~~~~~~------~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~ 138 (286)
. +.+.+++..+++.+....+... ..+.+.+.+ ....++.+|.+..+...+..+..++++.+.+..+.++
T Consensus 90 ~---l~~~l~~~~ii~~tkg~~~~~~~~~~~~~~~~~~~~~~~~~~~vlsGP~~A~Ei~~~~pt~~vias~~~~~a~~i~ 166 (180)
T d1txga2 90 R---ILPYLKDQYIVLISKGLIDFDNSVLTVPEAVWRLKHDLRERTVAITGPAIAREVAKRMPTTVVFSSPSESSANKMK 166 (180)
T ss_dssp H---HTTTCCSCEEEECCCSEEEETTEEEEHHHHHHTTSTTCGGGEEEEESSCCHHHHHTTCCEEEEEECSCHHHHHHHH
T ss_pred h---hccccccceecccccCccccccccccchHHHHhhhcccccceeEEcCCccHHHHHcCCCcEEEEEcCCHHHHHHHH
Confidence 5 7777766544444333322111 112222222 1245678888877777677777788888888889999
Q ss_pred HHHHHhcCCe
Q psy764 139 PILKCMGRNI 148 (286)
Q Consensus 139 ~ll~~~g~~v 148 (286)
++|+.-..++
T Consensus 167 ~~f~~~~frv 176 (180)
T d1txga2 167 EIFETEYFGV 176 (180)
T ss_dssp HHHCBTTEEE
T ss_pred HHHCCCCEEE
Confidence 9987544333
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=99.12 E-value=1.6e-10 Score=90.34 Aligned_cols=97 Identities=14% Similarity=0.240 Sum_probs=77.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC---------------CcccCCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG---------------ANMALSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g---------------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
||+++|.+|+++||+|.+|||++++.+.+.+.| ...+.++.|+++++|+||+|+|. ...+.++.
T Consensus 12 ~G~~~A~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~aD~iii~v~~-~~~~~~~~ 90 (184)
T d1bg6a2 12 GGHAFAAYLALKGQSVLAWDIDAQRIKEIQDRGAIIAEGPGLAGTAHPDLLTSDIGLAVKDADVILIVVPA-IHHASIAA 90 (184)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHTSEEEESSSCCEEECCSEEESCHHHHHTTCSEEEECSCG-GGHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCCCchhhhhhhhhhhhhhhhhhhHhHhcCCCEEEEEEch-hHHHHHHH
Confidence 799999999999999999999999999887654 23457899999999999999996 57788887
Q ss_pred CCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcC
Q psy764 67 GSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQ 103 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g 103 (286)
+ +.+++.++++|+..++.... .....+.+...+
T Consensus 91 ~---i~~~l~~~~~iv~~~g~~~~-~~~~~~~~~~~~ 123 (184)
T d1bg6a2 91 N---IASYISEGQLIILNPGATGG-ALEFRKILRENG 123 (184)
T ss_dssp H---HGGGCCTTCEEEESSCCSSH-HHHHHHHHHHTT
T ss_pred H---hhhccCCCCEEEEeCCCCcc-HHHHHHHHHHhc
Confidence 5 88889999988876555444 344555555543
|
| >d1mv8a1 a.100.1.4 (A:203-300) GDP-mannose 6-dehydrogenase, middle domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: GDP-mannose 6-dehydrogenase, middle domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=98.92 E-value=7.4e-09 Score=71.87 Aligned_cols=95 Identities=15% Similarity=0.077 Sum_probs=75.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhH
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLL 234 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 234 (286)
..|+.+|++.|.+.+..+..++|...+|++.|+|...+.+++.... +... .+ ... .. .+||...++
T Consensus 2 e~AEl~K~~~N~~~a~kIsf~Nel~~lc~~~g~d~~~v~~~~~~d~---ri~~--~~--~~~----~p---G~G~GG~Cl 67 (98)
T d1mv8a1 2 EVAEMIKYTCNVWHAAKVTFANEIGNIAKAVGVDGREVMDVICQDH---KLNL--SR--YYM----RP---GFAFGGSCL 67 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHTTCT---TTTT--SS--TTC----SC---CSCCCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhcCc---cccc--cc--ccc----CC---cccCCcccc
Confidence 4689999999999999999999999999999999999999986431 1100 00 000 01 246778899
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHH
Q psy764 235 AKDMKLAEDLANRCTAQTDLSKLATSIYK 263 (286)
Q Consensus 235 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~ 263 (286)
.||...+...+++.|++.++++++.++-+
T Consensus 68 pKD~~al~~~a~~~~~~~~ll~~~~~~N~ 96 (98)
T d1mv8a1 68 PKDVRALTYRASQLDVEHPMLGSLMRSNS 96 (98)
T ss_dssp HHHHHHHHHHHHHTTCCCTTGGGHHHHHH
T ss_pred chhHHHHHHHHHHcCCChHHHHHHHHHHh
Confidence 99999999999999999999998887644
|
| >d1dlja2 c.2.1.6 (A:1-196) UDP-glucose dehydrogenase (UDPGDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.79 E-value=7e-09 Score=81.80 Aligned_cols=128 Identities=13% Similarity=0.099 Sum_probs=86.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc------------------CCcccCCHHHHhhcCcEEEEecCChhH---
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE------------------GANMALSLSTLASGAEFIISMLPASQD--- 60 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~------------------g~~~~~s~~e~~~~adivi~~v~~~~~--- 60 (286)
+|.++|..|+ .||+|++||.++++++.+.+. ......+......++|++++|+|++..
T Consensus 11 vGl~~a~~~a-~g~~V~g~Din~~~v~~l~~g~~p~~e~~l~~~~~~~~~~~~~~~~~~~~~~~~~ii~v~vpt~~~~~~ 89 (196)
T d1dlja2 11 VGLSLGVLLS-LQNEVTIVDILPSKVDKINNGLSPIQDEYIEYYLKSKQLSIKATLDSKAAYKEAELVIIATPTNYNSRI 89 (196)
T ss_dssp HHHHHHHHHT-TTSEEEEECSCHHHHHHHHTTCCSSCCHHHHHHHHHSCCCEEEESCHHHHHHHCSEEEECCCCCEETTT
T ss_pred hHHHHHHHHH-CCCcEEEEECCHHHHHHHhhcccccchhhHHHHhhhhhhhhhccchhhhhhhccccccccCCccccccC
Confidence 6999998785 699999999999998887642 123344566677899999999998743
Q ss_pred -------HHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhh----cCceEEEecC
Q psy764 61 -------VLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQ----EATLTFMVGG 129 (286)
Q Consensus 61 -------~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~----~g~l~~~~gg 129 (286)
++.+.. ......++.+++-.||+.|.+++++.+.+.+. ++.-.|.+-.+..+. ... .++.|+
T Consensus 90 ~~~~~~~v~~~~~----~~~~~~~~~~iii~Stv~pgt~~~~~~~~~~~--~~~~~PE~i~~G~ai~d~~~p~-riv~G~ 162 (196)
T d1dlja2 90 NYFDTQHVETVIK----EVLSVNSHATLIIKSTIPIGFITEMRQKFQTD--RIIFSPEFLRESKALYDNLYPS-RIIVSC 162 (196)
T ss_dssp TEECCHHHHHHHH----HHHHHCSSCEEEECSCCCTTHHHHHHHHTTCS--CEEECCCCCCTTSTTHHHHSCS-CEEEEC
T ss_pred CCcceeEEeehhh----hhhhcccceeEEeeeecCceeeeeeeeccchh--hhccchhhcchhhhHhhccCCC-EEEEeC
Confidence 122221 12224578899999999999999987776554 455567665444332 223 467777
Q ss_pred CHhhHHHH
Q psy764 130 DKSSLEKA 137 (286)
Q Consensus 130 ~~~~~~~~ 137 (286)
+++...++
T Consensus 163 ~~~~~~~~ 170 (196)
T d1dlja2 163 EENDSPKV 170 (196)
T ss_dssp CTTSCHHH
T ss_pred CHhhHHHH
Confidence 65543333
|
| >d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Short chain L-3-hydroxyacyl CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.70 E-value=4.4e-08 Score=76.79 Aligned_cols=144 Identities=14% Similarity=0.183 Sum_probs=93.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------c------------------CCcccCCHHHHhhcCcEEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------E------------------GANMALSLSTLASGAEFII 52 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~------------------g~~~~~s~~e~~~~adivi 52 (286)
||+.+|..++.+||+|++||++++..+...+ . .+..+.+..+++++||+|+
T Consensus 15 mG~~iA~~~a~~G~~V~l~D~~~~~l~~a~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~d~~~a~~~ad~Vi 94 (192)
T d1f0ya2 15 MGAGIAQVAAATGHTVVLVDQTEDILAKSKKGIEESLRKVAKKKFAENPKAGDEFVEKTLSTIATSTDAASVVHSTDLVV 94 (192)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTEEEESCHHHHTTSCSEEE
T ss_pred HHHHHHHHHHhCCCcEEEEECChHHHHHHHhhHHHHHHHHHHhhhhccchhhHHHHHHHHhhccccchhHhhhcccceeh
Confidence 8999999999999999999999876443321 1 2346678889999999999
Q ss_pred EecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---
Q psy764 53 SMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG--- 129 (286)
Q Consensus 53 ~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg--- 129 (286)
=|+|..-.++.-+.. .+-+..+++.++...|+..+. .++++.+. +.-+|+..-.+..+. .-.++=++.|
T Consensus 95 Eav~E~l~~K~~v~~--~l~~~~~~~~ilasnTS~l~i--~~la~~~~-~p~r~ig~HffnP~~---~~~lVEIv~g~~T 166 (192)
T d1f0ya2 95 EAIVENLKVKNELFK--RLDKFAAEHTIFASNTSSLQI--TSIANATT-RQDRFAGLHFFNPVP---VMKLVEVIKTPMT 166 (192)
T ss_dssp ECCCSCHHHHHHHHH--HHTTTSCTTCEEEECCSSSCH--HHHHTTSS-CGGGEEEEEECSSTT---TCCEEEEECCTTC
T ss_pred hhcccchhHHHHHHH--HHhhhcccCceeeccCccccc--chhhhhcc-CHhHEEeeccccccC---cccEEEEcCCCCC
Confidence 999987776654332 355566677776644433332 23444332 222333321122111 1123334444
Q ss_pred CHhhHHHHHHHHHHhcCCeEecCC
Q psy764 130 DKSSLEKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 130 ~~~~~~~~~~ll~~~g~~v~~~g~ 153 (286)
+++.++++..+++.+|+.++.+.+
T Consensus 167 ~~~~i~~~~~~~~~lgk~pV~v~D 190 (192)
T d1f0ya2 167 SQKTFESLVDFSKALGKHPVSCKD 190 (192)
T ss_dssp CHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CHHHHHHHHHHHHHcCCEEEEeec
Confidence 578999999999999999888754
|
| >d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Fatty oxidation complex alpha subunit, middle domain species: Pseudomonas fragi [TaxId: 296]
Probab=98.67 E-value=1.8e-08 Score=78.67 Aligned_cols=143 Identities=13% Similarity=0.177 Sum_probs=92.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH-----------cC-------------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK-----------EG-------------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~-----------~g-------------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+.+|..++.+||+|++||++++..++..+ .+ +....+.+ .+.++|+||-|+|.
T Consensus 15 mG~~iA~~~a~~G~~V~l~D~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~adlViEav~E 93 (186)
T d1wdka3 15 MGGGIAYQSASKGTPILMKDINEHGIEQGLAEAAKLLVGRVDKGRMTPAKMAEVLNGIRPTLSYG-DFGNVDLVVEAVVE 93 (186)
T ss_dssp HHHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHEEEESSST-TGGGCSEEEECCCS
T ss_pred HHHHHHHHHHhCCCeEEEEECCHHHHhhhhhhhhhhHHhhhcccccchhhhhhhhceeecccccc-cccccceeeeeecc
Confidence 8999999999999999999999886554322 11 23333333 46799999999998
Q ss_pred hhHHHHHhcCCccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecC---CHhhH
Q psy764 58 SQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGG---DKSSL 134 (286)
Q Consensus 58 ~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg---~~~~~ 134 (286)
.-.++.-++. .+-+..+++.++...|+..+. .++++.+. +.-+|+....+..+.. -.++=++.| +++.+
T Consensus 94 ~l~~K~~lf~--~l~~~~~~~~IiaSnTS~l~i--~~la~~~~-~p~r~~g~Hf~nP~~~---~~lVEiv~~~~T~~~~~ 165 (186)
T d1wdka3 94 NPKVKQAVLA--EVENHVREDAILASNTSTISI--SLLAKALK-RPENFVGMHFFNPVHM---MPLVEVIRGEKSSDLAV 165 (186)
T ss_dssp CHHHHHHHHH--HHHTTSCTTCEEEECCSSSCH--HHHGGGCS-CGGGEEEEECCSSTTT---CCEEEEEECSSCCHHHH
T ss_pred hHHHHHHHHH--HHHhhcCCCeeEEeccccccH--HHHHHhcc-CchheEeeccccCccc---CCeEEECCCCCCCHHHH
Confidence 7777653332 355667777777654444333 33444332 2234554443333322 122323333 57899
Q ss_pred HHHHHHHHHhcCCeEecCC
Q psy764 135 EKAKPILKCMGRNIVHCGD 153 (286)
Q Consensus 135 ~~~~~ll~~~g~~v~~~g~ 153 (286)
+.+..+++.+|+.++.+.+
T Consensus 166 ~~~~~~~~~lgk~pv~v~d 184 (186)
T d1wdka3 166 ATTVAYAKKMGKNPIVVND 184 (186)
T ss_dssp HHHHHHHHHTTCEEEEEES
T ss_pred HHHHHHHHHcCCEEEEEec
Confidence 9999999999998887754
|
| >d1dlja1 a.100.1.4 (A:197-294) UDP-glucose dehydrogenase (UDPGDH), middle domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: UDP-glucose/GDP-mannose dehydrogenase dimerisation domain domain: UDP-glucose dehydrogenase (UDPGDH), middle domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.55 E-value=1.3e-06 Score=60.21 Aligned_cols=91 Identities=18% Similarity=0.077 Sum_probs=71.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhHH
Q psy764 156 NGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLLA 235 (286)
Q Consensus 156 ~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 235 (286)
.|+.+|++.|.+.+..+..++|...+|++.|+|...+.+.+.... .... + .. . ...+|...++.
T Consensus 3 eAE~~K~~~N~fla~kIsf~Ne~~~lc~~~g~d~~~v~~~~~~d~---~~~~---~---~~-----~--pg~g~GG~Clp 66 (98)
T d1dlja1 3 EAEAVKLFANTYLALRVAYFNELDTYAESRKLNSHMIIQGISYDD---RIGM---H---YN-----N--PSFGYGGYSLP 66 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHTST---TTCS---S---SC-----C--CCSSCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhcc---ccCC---c---cc-----c--CCCCcccccCc
Confidence 588999999999999999999999999999999999988876542 1100 0 00 0 12467788999
Q ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHH
Q psy764 236 KDMKLAEDLANRCTAQTDLSKLATSIYKR 264 (286)
Q Consensus 236 kd~~~~~~~a~~~g~~~p~~~~~~~~~~~ 264 (286)
||...+. +.+.|++.++++++.+.-+.
T Consensus 67 KD~~al~--~~~~~~~~~ll~~~~~~N~~ 93 (98)
T d1dlja1 67 KDTKQLL--ANYNNIPQTLIEAIVSSNNV 93 (98)
T ss_dssp HHHHHHH--HHHTTSSCSHHHHHHHHHHH
T ss_pred ccHHHHH--HHhcCCCcHHHHHHHHHHHh
Confidence 9999884 56778999999999887654
|
| >d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-glycerate dehydrogenase species: Hyphomicrobium methylovorum [TaxId: 84]
Probab=98.41 E-value=2.1e-07 Score=72.68 Aligned_cols=102 Identities=18% Similarity=0.151 Sum_probs=83.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.+..-|.+|.+||+...........+.....++.++++.||+|++++|-....+.++.. ..++.+++|.++
T Consensus 58 IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~ll~~sD~v~l~~plt~~T~~li~~--~~l~~mk~~a~l 135 (191)
T d1gdha1 58 IGQALAKRAQGFDMDIDYFDTHRASSSDEASYQATFHDSLDSLLSVSQFFSLNAPSTPETRYFFNK--ATIKSLPQGAIV 135 (191)
T ss_dssp HHHHHHHHHHTTTCEEEEECSSCCCHHHHHHHTCEECSSHHHHHHHCSEEEECCCCCTTTTTCBSH--HHHTTSCTTEEE
T ss_pred chHHHHHHHHhhccccccccccccccchhhcccccccCCHHHHHhhCCeEEecCCCCchHhheecH--HHhhCcCCccEE
Confidence 789999999999999999998766544444556677789999999999999999987777777753 456779999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
|++|-...-.-..+.+.+.+..+.
T Consensus 136 IN~sRG~ivde~aL~~aL~~g~i~ 159 (191)
T d1gdha1 136 VNTARGDLVDNELVVAALEAGRLA 159 (191)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSEE
T ss_pred EecCCccchhhHHHHHHHHcCCce
Confidence 999988877777888888776543
|
| >d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Putative formate dehydrogenase species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.39 E-value=2.9e-07 Score=71.23 Aligned_cols=96 Identities=13% Similarity=0.073 Sum_probs=78.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.+..-|.+|.+|||++.. .......++.+++++||+|++++|.....+.++.. ..++.++++.++
T Consensus 53 IG~~va~~l~~~g~~v~~~d~~~~~------~~~~~~~~l~ell~~sDiv~~~~pl~~~t~~li~~--~~l~~mk~~ail 124 (181)
T d1qp8a1 53 IGTRVGKILAALGAQVRGFSRTPKE------GPWRFTNSLEEALREARAAVCALPLNKHTRGLVKY--QHLALMAEDAVF 124 (181)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCC------SSSCCBSCSHHHHTTCSEEEECCCCSTTTTTCBCH--HHHTTSCTTCEE
T ss_pred ccccceeeeeccccccccccccccc------cceeeeechhhhhhccchhhccccccccccccccc--ceeeeccccceE
Confidence 7899999999999999999998642 23455678999999999999999987777777753 456778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCc
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~ 105 (286)
|++|-..--....+.+.+.+..+.
T Consensus 125 IN~~RG~ivd~~aL~~aL~~~~i~ 148 (181)
T d1qp8a1 125 VNVGRAEVLDRDGVLRILKERPQF 148 (181)
T ss_dssp EECSCGGGBCHHHHHHHHHHCTTC
T ss_pred EeccccccccchhhhhhcccCcEE
Confidence 999987777777788888776443
|
| >d1jaya_ c.2.1.6 (A:) Coenzyme F420H2:NADP+ oxidoreductase (FNO) {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Coenzyme F420H2:NADP+ oxidoreductase (FNO) species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.33 E-value=9.6e-07 Score=68.49 Aligned_cols=164 Identities=13% Similarity=0.105 Sum_probs=84.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC-------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCc--ccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG-------ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSD--GIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~--~l~ 72 (286)
||+++|+.|+++||+|.+|+|++++++.+.+.. .....+........+....+.+............. ...
T Consensus 12 iG~alA~~la~~G~~V~l~~R~~e~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (212)
T d1jaya_ 12 LGKGLALRLATLGHEIVVGSRREEKAEAKAAEYRRIAGDASITGMKNEDAAEACDIAVLTIPWEHAIDTARDLKNILREK 91 (212)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSHHHHHHHHHHHHHHHSSCCEEEEEHHHHHHHCSEEEECSCHHHHHHHHHHTHHHHTTS
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEeeccccccchhhhhhhheeeeccchHHHHhhhhhccc
Confidence 799999999999999999999999988876541 22233445555566677777764433332211000 000
Q ss_pred ccCCCCCEEEEcC-----CCCchHHHHHHHHHHhcCCceEeccCCCCHHhh----hcCceEEEecCCHhhHHHHH-HHHH
Q psy764 73 KHAKPGVIVIDSS-----TVDPQVPQTLSNLAREKQITFLDAPVSGGTKAA----QEATLTFMVGGDKSSLEKAK-PILK 142 (286)
Q Consensus 73 ~~l~~g~ivid~s-----t~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a----~~g~l~~~~gg~~~~~~~~~-~ll~ 142 (286)
..........+.. .............+... .......+.+.+... ........++.+......+. .+.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~a~~~~~~~~~~ 170 (212)
T d1jaya_ 92 IVVSPLVPVSRGAKGFTYSSERSAAEIVAEVLESE-KVVSALHTIPAARFANLDEKFDWDVPVCGDDDESKKVVMSLISE 170 (212)
T ss_dssp EEEECCCCEECCTTCCEECCSSCHHHHHHHHHTCS-CEEECCTTCCHHHHHCTTCCCCEEEEEEESCHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhhhhhhhhhhh-cccccceeecHHHhcCcccccCccceEEeCCHHHHHHHHHHHhh
Confidence 0000001111100 11112222333333222 111111222222221 22333556666766666554 4556
Q ss_pred HhcCCeEecCCcchHHHHHHHHHH
Q psy764 143 CMGRNIVHCGDSGNGQVAKLCNNM 166 (286)
Q Consensus 143 ~~g~~v~~~g~~g~a~~~Kl~~n~ 166 (286)
.++.+.++.|+...+..+|-+.++
T Consensus 171 ~~g~~~~~~G~l~~a~~~e~~~~l 194 (212)
T d1jaya_ 171 IDGLRPLDAGPLSNSRLVESLTPL 194 (212)
T ss_dssp STTEEEEEEESGGGHHHHHTHHHH
T ss_pred CCCeEEEEeChHHHHHHHHhHHHH
Confidence 678888899988888888755443
|
| >d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Formate dehydrogenase species: Pseudomonas sp., strain 101 [TaxId: 306]
Probab=98.33 E-value=3.4e-07 Score=71.37 Aligned_cols=101 Identities=9% Similarity=0.026 Sum_probs=83.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+++.|..-|.+|.+||+...........+.....++.+++++||+|++++|-....+.++.. ..++.+++|.++
T Consensus 55 IG~~va~~l~~fg~~v~~~d~~~~~~~~~~~~~~~~~~~l~~~l~~sD~v~~~~plt~~T~~li~~--~~l~~mk~ga~l 132 (188)
T d2naca1 55 IGLAVLRRLAPFDVHLHYTDRHRLPESVEKELNLTWHATREDMYPVCDVVTLNCPLHPETEHMIND--ETLKLFKRGAYI 132 (188)
T ss_dssp HHHHHHHHHGGGTCEEEEECSSCCCHHHHHHHTCEECSSHHHHGGGCSEEEECSCCCTTTTTCBSH--HHHTTSCTTEEE
T ss_pred cchhhhhhhhccCceEEEEeeccccccccccccccccCCHHHHHHhccchhhcccccccchhhhHH--HHHHhCCCCCEE
Confidence 789999999988999999998765555555667888899999999999999999988777777754 356678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|++|-...-.-..+.+.+.+..+
T Consensus 133 IN~aRG~ivd~~aL~~aL~~g~i 155 (188)
T d2naca1 133 VNTARGKLCDRDAVARALESGRL 155 (188)
T ss_dssp EECSCGGGBCHHHHHHHHHTTSE
T ss_pred EecCchhhhhHHHHHHHHhCCCc
Confidence 99998887777788887776543
|
| >d1ks9a2 c.2.1.6 (A:1-167) Ketopantoate reductase PanE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Ketopantoate reductase PanE species: Escherichia coli [TaxId: 562]
Probab=98.32 E-value=5e-08 Score=74.36 Aligned_cols=83 Identities=14% Similarity=0.102 Sum_probs=63.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC-------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG-------ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g-------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
||+.+|..|+++||+|++|+|++++.+.+...+ .....+..+....+|+||+|+|. .++++++.. +.+.
T Consensus 11 iG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~iii~vka-~~~~~~~~~---l~~~ 86 (167)
T d1ks9a2 11 LGQLWLTALCKQGHEVQGWLRVPQPYCSVNLVETDGSIFNESLTANDPDFLATSDLLLVTLKA-WQVSDAVKS---LAST 86 (167)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSEEEEEEECTTSCEEEEEEEESCHHHHHTCSEEEECSCG-GGHHHHHHH---HHTT
T ss_pred HHHHHHHHHHHCCCceEEEEcCHHHhhhhccccCCccccccccccchhhhhcccceEEEeecc-cchHHHHHh---hccc
Confidence 799999999999999999999987654433222 12334556777899999999996 578888774 6777
Q ss_pred CCCCCEEEEcCCCC
Q psy764 75 AKPGVIVIDSSTVD 88 (286)
Q Consensus 75 l~~g~ivid~st~~ 88 (286)
+.++++|+.+.+..
T Consensus 87 ~~~~~~Iv~~qNG~ 100 (167)
T d1ks9a2 87 LPVTTPILLIHNGM 100 (167)
T ss_dssp SCTTSCEEEECSSS
T ss_pred cCcccEEeeccCcc
Confidence 78888888876654
|
| >d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Transcription corepressor CtbP species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]
Probab=98.30 E-value=4.4e-07 Score=70.85 Aligned_cols=100 Identities=12% Similarity=0.139 Sum_probs=80.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.+..-|.+|.+||+....- .....+.....++.++++.||+|++++|-....+.++.. ..++.++++.++
T Consensus 60 IG~~va~~l~~fg~~v~~~d~~~~~~-~~~~~~~~~~~~l~~ll~~sD~i~~~~plt~~T~~li~~--~~l~~mk~~a~l 136 (193)
T d1mx3a1 60 VGQAVALRAKAFGFNVLFYDPYLSDG-VERALGLQRVSTLQDLLFHSDCVTLHCGLNEHNHHLIND--FTVKQMRQGAFL 136 (193)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCTT-HHHHHTCEECSSHHHHHHHCSEEEECCCCCTTCTTSBSH--HHHTTSCTTEEE
T ss_pred ccccceeeeeccccceeeccCccccc-chhhhccccccchhhccccCCEEEEeecccccchhhhhH--HHHhccCCCCeE
Confidence 78999999999999999999875532 233457778889999999999999999977666666643 356678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|++|-...-.-..+.+.+.+..+
T Consensus 137 IN~sRG~ivde~aL~~aL~~~~i 159 (193)
T d1mx3a1 137 VNTARGGLVDEKALAQALKEGRI 159 (193)
T ss_dssp EECSCTTSBCHHHHHHHHHHTSE
T ss_pred EecCCceEEcHHHHHHHHHcCCc
Confidence 99998887777888888876543
|
| >d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.18 E-value=1.8e-06 Score=66.79 Aligned_cols=99 Identities=25% Similarity=0.356 Sum_probs=79.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.+..-|.+|.+||+...+... ...+.. ..++.|++++||+|++++|-....+.++.. ..+..++++.++
T Consensus 55 IG~~va~~~~~fg~~v~~~d~~~~~~~~-~~~~~~-~~~l~ell~~sDiv~~~~Plt~~T~~lin~--~~l~~mk~~a~l 130 (184)
T d1ygya1 55 IGQLVAQRIAAFGAYVVAYDPYVSPARA-AQLGIE-LLSLDDLLARADFISVHLPKTPETAGLIDK--EALAKTKPGVII 130 (184)
T ss_dssp HHHHHHHHHHTTTCEEEEECTTSCHHHH-HHHTCE-ECCHHHHHHHCSEEEECCCCSTTTTTCBCH--HHHTTSCTTEEE
T ss_pred hhHHHHHHhhhccceEEeecCCCChhHH-hhcCce-eccHHHHHhhCCEEEEcCCCCchhhhhhhH--HHHhhhCCCceE
Confidence 6889999998889999999988655332 334554 458999999999999999988777777753 456778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|++|-..--.-..+.+.+.+..+
T Consensus 131 IN~sRG~iVde~aL~~aL~~~~i 153 (184)
T d1ygya1 131 VNAARGGLVDEAALADAITGGHV 153 (184)
T ss_dssp EECSCTTSBCHHHHHHHHHTSSE
T ss_pred EEecchhhhhhHHHHHHHhcCcE
Confidence 99998887777888888876644
|
| >d1e5qa1 c.2.1.3 (A:2-124,A:392-450) Saccharopine reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Saccharopine reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=98.11 E-value=3e-06 Score=64.70 Aligned_cols=100 Identities=19% Similarity=0.240 Sum_probs=69.9
Q ss_pred CccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC---------CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 1 MISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEG---------ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g---------~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
.||..+|++|.++||+|++||||.++++.+.+.. ........+.+...|+++.++|.........
T Consensus 12 ~~G~~~a~~L~~~g~~V~v~dr~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~~~~~~~~------ 85 (182)
T d1e5qa1 12 FVTRPTLDVLTDSGIKVTVACRTLESAKKLSAGVQHSTPISLDVNDDAALDAEVAKHDLVISLIPYTFHATVIK------ 85 (182)
T ss_dssp TTHHHHHHHHHTTTCEEEEEESCHHHHHHHHTTCTTEEEEECCTTCHHHHHHHHTTSSEEEECSCGGGHHHHHH------
T ss_pred HHHHHHHHHHHhCCCEEEEEECChHHHHHHHhcccccccccccccchhhhHhhhhccceeEeeccchhhhHHHH------
Confidence 3899999999999999999999999999997642 1122234566778999999998654332222
Q ss_pred cccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 72 LKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 72 ~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.....+..++|.+...+ ....+.+.....+..++.
T Consensus 86 -~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~ 120 (182)
T d1e5qa1 86 -SAIRQKKHVVTTSYVSP-AMMELDQAAKDAGITVMN 120 (182)
T ss_dssp -HHHHHTCEEECSSCCCH-HHHHTHHHHHHTTCEEEC
T ss_pred -HHHhhccceeecccCcH-HHHHHHHHhccccceeeh
Confidence 22335677888776544 455666666666666654
|
| >d2hmva1 c.2.1.9 (A:7-140) Ktn bsu222 {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn bsu222 species: Bacillus subtilis [TaxId: 1423]
Probab=98.08 E-value=5.4e-06 Score=60.43 Aligned_cols=98 Identities=15% Similarity=0.106 Sum_probs=64.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-------cCCHHHH-hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-------ALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|+.+|+.|.+.|++|+++|.++++++++.+.|..+ .+.+.++ ++++|.+|++++++.....+... +..
T Consensus 11 ~G~~la~~L~~~g~~vvvid~d~~~~~~~~~~~~~~~~gd~~~~~~l~~a~i~~a~~vi~~~~~~~~~~~~~~~---~~~ 87 (134)
T d2hmva1 11 FGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQASTLTTL---LLK 87 (134)
T ss_dssp HHHHHHHHHHHTTCCCEEEESCHHHHHHTTTTCSEEEECCTTCTTHHHHHTGGGCSEEEECCCSCHHHHHHHHH---HHH
T ss_pred HHHHHHHHHHHCCCeEEEecCcHHHHHHHHHhCCcceeeecccchhhhccCCccccEEEEEcCchHHhHHHHHH---HHH
Confidence 699999999999999999999999999988766322 1223444 67899999999976554443321 233
Q ss_pred cCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 74 HAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.....++++-..+ +. ..+.+...|+.++-
T Consensus 88 ~~~~~~iiar~~~--~~----~~~~l~~~Gad~vi 116 (134)
T d2hmva1 88 ELDIPNIWVKAQN--YY----HHKVLEKIGADRII 116 (134)
T ss_dssp HTTCSEEEEECCS--HH----HHHHHHHHTCSEEE
T ss_pred HcCCCcEEeeccc--Hh----HHHHHHHCCCCEEE
Confidence 3444455553332 22 23445566776553
|
| >d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-lactate dehydrogenase species: Lactobacillus helveticus [TaxId: 1587]
Probab=98.06 E-value=3.4e-06 Score=65.86 Aligned_cols=98 Identities=18% Similarity=0.193 Sum_probs=76.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.|..-|.+|.+||+...... ...+. ...++.+++++||+|++++|.....+.++.. ..+..+++|.++
T Consensus 54 IG~~va~~l~~fg~~V~~~d~~~~~~~--~~~~~-~~~~l~~~l~~sDii~~~~plt~~T~~li~~--~~l~~mk~~a~l 128 (197)
T d1j4aa1 54 IGQVFMQIMEGFGAKVITYDIFRNPEL--EKKGY-YVDSLDDLYKQADVISLHVPDVPANVHMIND--ESIAKMKQDVVI 128 (197)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCHHH--HHTTC-BCSCHHHHHHHCSEEEECSCCCGGGTTCBSH--HHHHHSCTTEEE
T ss_pred cchhHHHhHhhhcccccccCccccccc--cccee-eeccccccccccccccccCCccccccccccH--HHHhhhCCccEE
Confidence 789999999999999999998765432 22343 4578999999999999999977776766643 345678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|++|-...-.-..+.+.+.+.-+
T Consensus 129 IN~sRG~ivde~aL~~aL~~~~i 151 (197)
T d1j4aa1 129 VNVSRGPLVDTDAVIRGLDSGKI 151 (197)
T ss_dssp EECSCGGGBCHHHHHHHHHHTSE
T ss_pred EecCchhhhhhHHHHHHHhcccc
Confidence 99998877777777777776544
|
| >d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Phosphoglycerate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=97.95 E-value=3.4e-06 Score=65.46 Aligned_cols=97 Identities=19% Similarity=0.202 Sum_probs=77.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.+..-|.+|.+||+...... .......+++|+++.||+|++++|-....+.++.. ..++.++++.++
T Consensus 55 IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~ell~~sDii~i~~plt~~T~~li~~--~~l~~mk~~a~l 128 (188)
T d1sc6a1 55 IGTQLGILAESLGMYVYFYDIENKLPL----GNATQVQHLSDLLNMSDVVSLHVPENPSTKNMMGA--KEISLMKPGSLL 128 (188)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCCCC----TTCEECSCHHHHHHHCSEEEECCCSSTTTTTCBCH--HHHHHSCTTEEE
T ss_pred chhhhhhhcccccceEeeccccccchh----hhhhhhhhHHHHHhhccceeecccCCcchhhhccH--HHHhhCCCCCEE
Confidence 788999999999999999998754321 23445578999999999999999977777777653 456778999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQI 104 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~ 104 (286)
|++|-..--....+.+.+.+..+
T Consensus 129 IN~aRG~lvde~aL~~aL~~~~~ 151 (188)
T d1sc6a1 129 INASRGTVVDIPALADALASKHL 151 (188)
T ss_dssp EECSCSSSBCHHHHHHHHHTTSE
T ss_pred EEcCcHHhhhhHHHHHHHHcCCc
Confidence 99998888888888888876543
|
| >d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: D-2-hydroxyisocaproate dehydrogenase species: Lactobacillus casei [TaxId: 1582]
Probab=97.94 E-value=6.3e-06 Score=64.47 Aligned_cols=109 Identities=17% Similarity=0.171 Sum_probs=80.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||+.+|+.|..-|.+|++||+.+.... .......++.++++.||+|++++|.....+.++.. ..+..++++.++
T Consensus 56 IG~~va~~l~~fg~~v~~~d~~~~~~~----~~~~~~~~l~~l~~~~D~v~~~~plt~~T~~li~~--~~l~~mk~~a~l 129 (199)
T d1dxya1 56 IGQVAIKLFKGFGAKVIAYDPYPMKGD----HPDFDYVSLEDLFKQSDVIDLHVPGIEQNTHIINE--AAFNLMKPGAIV 129 (199)
T ss_dssp HHHHHHHHHHHTTCEEEEECSSCCSSC----CTTCEECCHHHHHHHCSEEEECCCCCGGGTTSBCH--HHHHHSCTTEEE
T ss_pred ccccccccccccceeeeccCCccchhh----hcchhHHHHHHHHHhcccceeeecccccccccccH--HHhhccCCceEE
Confidence 789999999999999999998765321 11223458999999999999999987777777653 456678999999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHH
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTK 116 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~ 116 (286)
|++|-...-....+.+.+.+.-+....--|+-.++
T Consensus 130 IN~aRG~vvde~aL~~aL~~g~i~ga~lDV~~~EP 164 (199)
T d1dxya1 130 INTARPNLIDTQAMLSNLKSGKLAGVGIDTYEYET 164 (199)
T ss_dssp EECSCTTSBCHHHHHHHHHTTSEEEEEESSCTTHH
T ss_pred EecccHhhhhhHHHHHHHhcCCcceEeccccCCCC
Confidence 99998887777788887776544332222544443
|
| >d1gpja2 c.2.1.7 (A:144-302) Glutamyl tRNA-reductase middle domain {Archaeon Methanopyrus kandleri [TaxId: 2320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Glutamyl tRNA-reductase middle domain species: Archaeon Methanopyrus kandleri [TaxId: 2320]
Probab=97.81 E-value=7.3e-06 Score=61.70 Aligned_cols=58 Identities=17% Similarity=0.206 Sum_probs=48.5
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CCc--ccCCHHHHhhcCcEEEEecCChh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GAN--MALSLSTLASGAEFIISMLPASQ 59 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~--~~~s~~e~~~~adivi~~v~~~~ 59 (286)
||..++++|.+.|. ++++|||+.++++.+.+. |.. ..++..+.+.++|+||.|++.+.
T Consensus 35 ~g~~v~~~L~~~g~~~i~v~nRt~~ka~~l~~~~~~~~~~~~~~~~~l~~~Divi~atss~~ 96 (159)
T d1gpja2 35 MGKTVAKSLVDRGVRAVLVANRTYERAVELARDLGGEAVRFDELVDHLARSDVVVSATAAPH 96 (159)
T ss_dssp HHHHHHHHHHHHCCSEEEEECSSHHHHHHHHHHHTCEECCGGGHHHHHHTCSEEEECCSSSS
T ss_pred HHHHHHHHHHhcCCcEEEEEcCcHHHHHHHHHhhhcccccchhHHHHhccCCEEEEecCCCC
Confidence 78899999999998 699999999999888654 543 34577888899999999998653
|
| >d1i36a1 a.100.1.8 (A:153-264) Conserved hypothetical protein MTH1747 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Conserved hypothetical protein MTH1747 domain: Conserved hypothetical protein MTH1747 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.62 E-value=5.9e-05 Score=52.58 Aligned_cols=104 Identities=13% Similarity=0.204 Sum_probs=71.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcccccccCCCCCccccCCCCCCCCCCccchhH
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCWSSEVYNPVPGVLSNVPASNNYNGGFKISLL 234 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 234 (286)
|.+.++||+...+..+..+.+.|++..++++|+..+.+- -+..+....|.....+..+.+ .-.-...
T Consensus 1 G~ASalKM~rS~~~KG~~AL~~e~~~aA~~~Gv~~~l~~-~l~~s~~~~~~~~~~~~v~~~------------~~ha~Rr 67 (112)
T d1i36a1 1 GDASAIKMLRSSYTKGVSALLWETLTAAHRLGLEEDVLE-MLEYTEGNDFRESAISRLKSS------------CIHARRR 67 (112)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH-HHHTTSCSSTHHHHHHHHHHH------------HHTHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHcCCccHHHHHHHHhcCC------------cchhhHH
Confidence 689999999999999999999999999999999876554 445443323321000000000 0012345
Q ss_pred HHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCC
Q psy764 235 AKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQD 272 (286)
Q Consensus 235 ~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~ 272 (286)
..+|+.+.++.++. ++..+.+++.++|++..+.+.+.
T Consensus 68 ~~EM~Eia~tl~~~-l~P~m~~a~a~~~~~~~d~~~~~ 104 (112)
T d1i36a1 68 YEEMKEVQDMLAEV-IDPVMPTCIIRIFDKLKDVKVSA 104 (112)
T ss_dssp HHHHHHHHHHHHTT-SCCSHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHHHh-CCchHHHHHHHHHHHHHhcCCCh
Confidence 78899999999885 88889999999999987766554
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=97.52 E-value=0.00031 Score=57.70 Aligned_cols=96 Identities=18% Similarity=0.110 Sum_probs=64.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHc---cCCCcccccccCCCCC--------ccccCCCC
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVK-LGMNAKLLSDVINT---SSGRCWSSEVYNPVPG--------VLSNVPAS 222 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~-~Gl~~~~~~~~~~~---~~~~s~~~~~~~~~~~--------~~~~~~~~ 222 (286)
|+|+.+||++|.+.++++++++|++.+.++ .|++.+++.+++.. +.-.|+..+....... ++ +.+.+
T Consensus 1 GsGH~vKMVHNgIEY~~mq~iaE~y~~l~~~~~~~~~~i~~vf~~w~~~~l~syLleit~~il~~kd~~~~~~l-d~I~d 79 (297)
T d2pgda1 1 GAGHFVKMVHNGIEYGDMQLICEAYHLMKDVLGLGHKEMAKAFEEWNKTELDSFLIEITASILKFQDADGKHLL-PKIRD 79 (297)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTTTTTCBHHHHHHHHHHHCBCTTSSBSG-GGSCC
T ss_pred CCchhhhhhccHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHhCCCccHHHHHHHHHHHhccCCCcCcch-hhhhc
Confidence 799999999999999999999999999987 69999988888763 4555665543211000 00 01101
Q ss_pred CCCCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 223 NNYNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 223 ~~~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
.. .... .-+...+.|-++|+|.|++..+.
T Consensus 80 ~a-~~kG-------TG~Wt~~~Al~lgvp~p~I~~Av 108 (297)
T d2pgda1 80 SA-GQKG-------TGKWTAISALEYGVPVTLIGEAV 108 (297)
T ss_dssp CC-CCCS-------HHHHHHHHHHHHTCCCHHHHHHH
T ss_pred cc-cCCC-------chHHHHHHHHHcCCCchHHHHHH
Confidence 00 0111 23457788888999999877664
|
| >d1n1ea1 a.100.1.6 (A:198-357) Glycerol-3-phosphate dehydrogenase {Trypanosome (Leishmania mexicana) [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Trypanosome (Leishmania mexicana) [TaxId: 5665]
Probab=97.52 E-value=3.8e-06 Score=63.35 Aligned_cols=121 Identities=13% Similarity=0.039 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc----CCCcccccccCCCCCccccCCCCCCCCCCcc
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS----SGRCWSSEVYNPVPGVLSNVPASNNYNGGFK 230 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~ 230 (286)
|....+++..|+..+.+..++.|+..+++.+|-++++++....-+ ++.|..++++..+..+..+............
T Consensus 21 Gi~~gl~~g~N~~aali~~g~~Em~~~~~~~g~~~~t~~~laGlGDli~Tc~s~~sRN~~~G~~l~~g~~~~e~~~~~~~ 100 (160)
T d1n1ea1 21 GVANGLGMGLNARAALIMRGLLEIRDLTAALGGDGSAVFGLAGLGDLQLTCSSELSRNFTVGKKLGKGLPIEEIQRTSKA 100 (160)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCCSTTTTSTTTHHHHHHHTTCTTSHHHHHHHHHHHTCCHHHHHHSCCS
T ss_pred HHHHHcCCChhHHHHHHHHHHHHHHHHHHHhCCCccceeccccchhheeeeecchhHHHHHHHHHhccccHHHHHHhccc
Confidence 455556677899999999999999999999999988887653332 4555555654422112111110000001123
Q ss_pred chhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q psy764 231 ISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFL 282 (286)
Q Consensus 231 ~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 282 (286)
+..+.+.++.+.++++++++++|+++++++++. ++.|...+++-|
T Consensus 101 ~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~-------~~~~p~~~i~~L 145 (160)
T d1n1ea1 101 VAEGVATADPLMRLAKQLKVKMPLCHQIYEIVY-------KKKNPRDALADL 145 (160)
T ss_dssp CCHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHH-------SCCCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHh-------CcCCHHHHHHHH
Confidence 556778888899999999999999999999873 455555544444
|
| >d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Ktn Mja218 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=97.48 E-value=0.0004 Score=49.96 Aligned_cols=97 Identities=12% Similarity=0.097 Sum_probs=62.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCccc----CCHH---HH-hhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMA----LSLS---TL-ASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~----~s~~---e~-~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
+|..+++.|.+.|++|.+.|+++++++++.+. +..+. .++. ++ ++++|.++.+.+++.. .-.... +.
T Consensus 11 ~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~~~~~vi~Gd~~~~~~l~~~~i~~a~~vv~~t~~d~~-N~~~~~---~~ 86 (132)
T d1lssa_ 11 VGYTLAKSLSEKGHDIVLIDIDKDICKKASAEIDALVINGDCTKIKTLEDAGIEDADMYIAVTGKEEV-NLMSSL---LA 86 (132)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCSSEEEESCTTSHHHHHHTTTTTCSEEEECCSCHHH-HHHHHH---HH
T ss_pred HHHHHHHHHHHCCCCcceecCChhhhhhhhhhhhhhhccCcccchhhhhhcChhhhhhhcccCCcHHH-HHHHHH---HH
Confidence 68999999999999999999999999988764 54331 2222 22 4689999998887643 222211 33
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
..+.+.++|+-.. .+.. .+.+.+.|+.++-
T Consensus 87 k~~~~~~iI~~~~--~~~~----~~~l~~~G~d~vi 116 (132)
T d1lssa_ 87 KSYGINKTIARIS--EIEY----KDVFERLGVDVVV 116 (132)
T ss_dssp HHTTCCCEEEECS--STTH----HHHHHHTTCSEEE
T ss_pred HHcCCceEEEEec--CHHH----HHHHHHCCCCEEE
Confidence 4456667766433 3333 2345566775543
|
| >d1np3a2 c.2.1.6 (A:1-182) Class I ketol-acid reductoisomerase (KARI) {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class I ketol-acid reductoisomerase (KARI) species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.45 E-value=0.00021 Score=53.50 Aligned_cols=80 Identities=16% Similarity=0.147 Sum_probs=62.8
Q ss_pred cHHHHHHHHhCCCcEEEEcCCch-HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTD-ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
|.+-|.||..+|.+|.+--|... ..+...+.|..+ -+++|+++.+|+|.+.+||. .-.+++.. .+.+.+++|+.+
T Consensus 28 G~AhAlNLrDSG~~V~VGLr~gs~s~~~A~~~Gf~v-~~~~eA~~~aDiim~L~PD~-~q~~vy~~--~I~p~lk~g~~L 103 (182)
T d1np3a2 28 GHAHACNLKDSGVDVTVGLRSGSATVAKAEAHGLKV-ADVKTAVAAADVVMILTPDE-FQGRLYKE--EIEPNLKKGATL 103 (182)
T ss_dssp HHHHHHHHHHTTCCEEEECCTTCHHHHHHHHTTCEE-ECHHHHHHTCSEEEECSCHH-HHHHHHHH--HTGGGCCTTCEE
T ss_pred hHHHHhhhhhcCCCEEEEcCCCCccHHHHhhhcccc-ccHHHHhhhcCeeeeecchH-HHHHHHHH--hhhhhcCCCcEE
Confidence 56889999999999999877654 356666678776 47999999999999999964 44666631 388999999988
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
.-...
T Consensus 104 ~FaHG 108 (182)
T d1np3a2 104 AFAHG 108 (182)
T ss_dssp EESCC
T ss_pred EEecc
Confidence 75543
|
| >d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.25 E-value=0.00029 Score=52.47 Aligned_cols=82 Identities=15% Similarity=0.131 Sum_probs=63.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|..+|+.+...|-+|.+||++|.+.-+..-.|..+. +..+++..+|++|++..+... +.. .-++.+++|.++
T Consensus 35 iG~g~A~~~rg~G~~V~v~e~dp~~al~A~~dG~~v~-~~~~a~~~adivvtaTGn~~v----I~~--eh~~~MKdgaIL 107 (163)
T d1li4a1 35 VGKGCAQALRGFGARVIITEIDPINALQAAMEGYEVT-TMDEACQEGNIFVTTTGCIDI----ILG--RHFEQMKDDAIV 107 (163)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEEC-CHHHHTTTCSEEEECSSCSCS----BCH--HHHTTCCTTEEE
T ss_pred ccHHHHHHHHhCCCeeEeeecccchhHHhhcCceEee-ehhhhhhhccEEEecCCCccc----hhH--HHHHhccCCeEE
Confidence 6899999999999999999999977655555576655 689999999999999886432 211 134558899999
Q ss_pred EEcCCCCch
Q psy764 82 IDSSTVDPQ 90 (286)
Q Consensus 82 id~st~~p~ 90 (286)
.+.+...-+
T Consensus 108 ~N~Ghfd~E 116 (163)
T d1li4a1 108 CNIGHFDVE 116 (163)
T ss_dssp EECSSSTTS
T ss_pred EEeccccce
Confidence 998765544
|
| >d1txga1 a.100.1.6 (A:181-335) Glycerol-3-phosphate dehydrogenase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Glycerol-3-phosphate dehydrogenase domain: Glycerol-3-phosphate dehydrogenase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.04 E-value=8.2e-05 Score=55.38 Aligned_cols=119 Identities=12% Similarity=-0.076 Sum_probs=76.5
Q ss_pred chHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHcc----CCCcccccccCCCCCccccCCCCCC-
Q psy764 155 GNGQVAKLC-----NNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINTS----SGRCWSSEVYNPVPGVLSNVPASNN- 224 (286)
Q Consensus 155 g~a~~~Kl~-----~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~----~~~s~~~~~~~~~~~~~~~~~~~~~- 224 (286)
|....+++. .|+..+.+..++.|+..+++++|-+++++++...-+ ++.+ ++++..+..+..+......
T Consensus 20 Gi~~gl~~g~~~~~~N~~aali~~g~~Em~~~~~~~g~~~~t~~~~aGiGDLi~Tc~~--sRN~~~G~~l~~G~~~~e~~ 97 (155)
T d1txga1 20 AWIRGYESRKNVEMSNAKGVIATRAINEMAELIEILGGDRETAFGLSGFGDLIATFRG--GRNGMLGELLGKGLSIDEAM 97 (155)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHTSCGGGGGSTTTHHHHHHTTTC--HHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHhhcccccchHHHHHHHHHHHHhhHhhHHHhhcccchhhcccchhhhHHhhcCC--CCccHHHHHHhhhhhHHHHH
Confidence 445555665 599999999999999999999999999986653322 3332 5554432211111000000
Q ss_pred ---CCCCccchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHH
Q psy764 225 ---YNGGFKISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFL 282 (286)
Q Consensus 225 ---~~~~f~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~ 282 (286)
......+......++.+.+++++.++++|+++.+++++.. +.|...+++.|
T Consensus 98 ~~~~~~~~~~vEG~~t~~~v~~l~~~~~i~~Pi~~~vy~Il~~-------~~~~~~~i~~L 151 (155)
T d1txga1 98 EELERRGVGVVEGYKTAEKAYRLSSKINADTKLLDSIYRVLYE-------GLKVEEVLFEL 151 (155)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHS-------CCCHHHHHHHH
T ss_pred HHhccccccchHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhC-------cCCHHHHHHHH
Confidence 0001124556777888999999999999999999998762 44555554444
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=97.04 E-value=0.00017 Score=53.94 Aligned_cols=84 Identities=13% Similarity=0.160 Sum_probs=57.6
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHHHcC---Cccc----CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLAKEG---ANMA----LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA 75 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g---~~~~----~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l 75 (286)
|..=++...+.|-+|+++|++.++.+++.... .... ..+++.++++|+||.++-.|-.-...+-. +...+.+
T Consensus 44 G~~A~~~A~~lGA~V~~~D~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~aDivI~aalipG~~aP~lIt-~~mv~~M 122 (168)
T d1pjca1 44 GTEAAKMAVGLGAQVQIFDINVERLSYLETLFGSRVELLYSNSAEIETAVAEADLLIGAVLVPGRRAPILVP-ASLVEQM 122 (168)
T ss_dssp HHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHGGGSEEEECCHHHHHHHHHTCSEEEECCCCTTSSCCCCBC-HHHHTTS
T ss_pred HHHHHHHHhhCCCEEEEEeCcHHHHHHHHHhhcccceeehhhhhhHHHhhccCcEEEEeeecCCcccCeeec-HHHHhhc
Confidence 44455666778999999999999998887652 2221 23577788999999998655432222211 1245668
Q ss_pred CCCCEEEEcCCC
Q psy764 76 KPGVIVIDSSTV 87 (286)
Q Consensus 76 ~~g~ivid~st~ 87 (286)
++|.+|||.+.-
T Consensus 123 k~GSVIVDvaid 134 (168)
T d1pjca1 123 RTGSVIVDVAVD 134 (168)
T ss_dssp CTTCEEEETTCT
T ss_pred CCCcEEEEeecC
Confidence 999999999753
|
| >d1l7da1 c.2.1.4 (A:144-326) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=97.02 E-value=0.00044 Score=52.33 Aligned_cols=83 Identities=12% Similarity=0.151 Sum_probs=56.2
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccC-----------------------------CHHHHhhcCcEEEE
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMAL-----------------------------SLSTLASGAEFIIS 53 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~-----------------------------s~~e~~~~adivi~ 53 (286)
|..=++-...-|-.|+++|+++++.+++.+.+..... .+.+.+.++|+||.
T Consensus 41 G~~Aa~~A~~lGA~V~v~D~~~~~~~~l~~l~~~~i~~~~~~~~~~~~~~gyA~~~s~~~~~~~~~~l~~~l~~aDlVI~ 120 (183)
T d1l7da1 41 GLQAIATAKRLGAVVMATDVRAATKEQVESLGGKFITVDDEAMKTAETAGGYAKEMGEEFRKKQAEAVLKELVKTDIAIT 120 (183)
T ss_dssp HHHHHHHHHHTTCEEEEECSCSTTHHHHHHTTCEECCC-----------------------CCHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHcCCEEEEEeccHHHHHHHHHhhcceEEEeccccccccccccchhhcCHHHHHHHHHHHHHHHHhhhhhee
Confidence 4444555566789999999999999999887643321 12344678999999
Q ss_pred ecCChhHHHHHhcCCccccccCCCCCEEEEcCC
Q psy764 54 MLPASQDVLDAYDGSDGILKHAKPGVIVIDSST 86 (286)
Q Consensus 54 ~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st 86 (286)
++-.|..-...+-. +...+.+++|.+|||.+-
T Consensus 121 talipG~~aP~lit-~~mv~~Mk~GSVIVDvai 152 (183)
T d1l7da1 121 TALIPGKPAPVLIT-EEMVTKMKPGSVIIDLAV 152 (183)
T ss_dssp CCCCTTSCCCCCSC-HHHHTTSCTTCEEEETTG
T ss_pred eeecCCcccceeeh-HHHHHhcCCCcEEEEEee
Confidence 88655332222111 135566899999999874
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.00 E-value=0.00068 Score=55.72 Aligned_cols=98 Identities=11% Similarity=0.102 Sum_probs=64.6
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHc---c-CCCcccccccCCCCCccccCCCCCCCCCCcc
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKLGMNAKLLSDVINT---S-SGRCWSSEVYNPVPGVLSNVPASNNYNGGFK 230 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~---~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~ 230 (286)
|+|+.+||++|.+.++.+++++|++.+.+..|.+.+++.+++.. + ...||..+..... +. ..+-...+-
T Consensus 1 GsGH~vKmvHNgIEy~~mq~iaE~~~~l~~~~~~~~~i~~~f~~w~~~~~l~syL~eit~~i---l~----~~d~~g~~l 73 (300)
T d1pgja1 1 GAGSCVKMYHNSGEYAILQIWGEVFDILRAMGLNNDEVAAVLEDWKSKNFLKSYMLDISIAA---AR----AKDKDGSYL 73 (300)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSTTCBHHHHHHHHH---HH----CBCTTSSBG
T ss_pred CCccchhhhcchHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhCCCeehHHHHHHHHHH---Hh----hcCCCCchh
Confidence 79999999999999999999999999999999999888888664 2 2456654332110 00 000000010
Q ss_pred chh------HHHHHHHHHHHHhhcCCCchHHHHHH
Q psy764 231 ISL------LAKDMKLAEDLANRCTAQTDLSKLAT 259 (286)
Q Consensus 231 ~~~------~~kd~~~~~~~a~~~g~~~p~~~~~~ 259 (286)
++. ....-+.....|-++|+|.|++.++.
T Consensus 74 ~d~I~d~a~~kGTG~Wt~~~al~~gvp~p~i~~Av 108 (300)
T d1pgja1 74 TEHVMDRIGSKGTGLWSAQEALEIGVPAPSLNMAV 108 (300)
T ss_dssp GGGBCCCCCCCSHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHhcccccCCchHHHHHHHHHHcCCCccHHHHHH
Confidence 111 01123456778889999999776655
|
| >d1y81a1 c.2.1.8 (A:6-121) Hypothetical protein PF0725 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PF0725 species: Pyrococcus furiosus [TaxId: 2261]
Probab=97.00 E-value=0.00088 Score=47.01 Aligned_cols=93 Identities=15% Similarity=0.189 Sum_probs=66.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.|....++|.+.||+|+-.|.+.+.+ .|.....|++|+-...|++++++| ++.+.+++.+ ..+ .....++
T Consensus 16 ~g~~v~~~L~~~g~~V~pVnP~~~~i-----~G~~~y~sl~~lp~~~D~vvi~vp-~~~~~~~l~~---~~~-~g~k~v~ 85 (116)
T d1y81a1 16 YGNIILKDLLSKGFEVLPVNPNYDEI-----EGLKCYRSVRELPKDVDVIVFVVP-PKVGLQVAKE---AVE-AGFKKLW 85 (116)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGSCTTCCEEEECSC-HHHHHHHHHH---HHH-TTCCEEE
T ss_pred cHHHHHHHHHHCCCEEEEEccccccc-----cCccccccchhccccceEEEEEeC-HHHHHHHHHH---HHh-cCCceEE
Confidence 36678899999999999888775543 388899999999889999999999 4566666653 322 2233566
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+...+.. .++.+.+++.|+.++.
T Consensus 86 ~~~g~~~----~~~~~~a~~~gi~vig 108 (116)
T d1y81a1 86 FQPGAES----EEIRRFLEKAGVEYSF 108 (116)
T ss_dssp ECTTSCC----HHHHHHHHHHTCEEEC
T ss_pred eccchhh----HHHHHHHHHcCCEEEc
Confidence 6544432 3456667788888774
|
| >d1tlta1 c.2.1.3 (A:5-127,A:268-308) Virulence factor MviM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Virulence factor MviM species: Escherichia coli [TaxId: 562]
Probab=96.95 E-value=0.0032 Score=46.74 Aligned_cols=93 Identities=16% Similarity=0.170 Sum_probs=65.8
Q ss_pred HHHHHhC-CCcE-EEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCC-CEEE
Q psy764 7 LFFLQFQ-GHDV-IVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPG-VIVI 82 (286)
Q Consensus 7 A~~L~~~-G~~V-~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g-~ivi 82 (286)
...+.+. ++++ .+||+++++.+.+.+. ++...++..++.++.|+|++|+|++...+-+.. .+..| .+++
T Consensus 18 ~~~l~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~D~V~I~tp~~~h~~~~~~-------al~~gk~V~~ 90 (164)
T d1tlta1 18 LPVLAAASDWTLQGAWSPTRAKALPICESWRIPYADSLSSLAASCDAVFVHSSTASHFDVVST-------LLNAGVHVCV 90 (164)
T ss_dssp HHHHHSCSSEEEEEEECSSCTTHHHHHHHHTCCBCSSHHHHHTTCSEEEECSCTTHHHHHHHH-------HHHTTCEEEE
T ss_pred HHHHHhCCCcEEEEEEechhHhhhhhhhcccccccccchhhhhhcccccccccchhccccccc-------cccccceeec
Confidence 3345443 4554 5789999998887644 888899999999999999999998765555443 23345 4566
Q ss_pred Ec-CCCCchHHHHHHHHHHhcCCce
Q psy764 83 DS-STVDPQVPQTLSNLAREKQITF 106 (286)
Q Consensus 83 d~-st~~p~~~~~~~~~~~~~g~~~ 106 (286)
+- -+.++.+.+++.+...+.+..+
T Consensus 91 EKPla~~~~e~~~l~~~a~~~~~~~ 115 (164)
T d1tlta1 91 DKPLAENLRDAERLVELAARKKLTL 115 (164)
T ss_dssp ESSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred cccccCCHHHHHHHHHHHHHcCCcE
Confidence 64 3456788888888777776544
|
| >d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: S-adenosylhomocystein hydrolase species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]
Probab=96.90 E-value=0.00067 Score=50.21 Aligned_cols=82 Identities=15% Similarity=0.140 Sum_probs=64.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|...|.+|...|-+|++++++|-++-+..-.|.++ .+..|+++.+|++|++..... ++.. .-+..++.|.++
T Consensus 34 vGrG~A~~~rg~Ga~V~V~E~DPi~alqA~mdGf~v-~~~~~a~~~aDi~vTaTGn~~----vI~~--~h~~~MKdgaIl 106 (163)
T d1v8ba1 34 VGKGCASSMKGLGARVYITEIDPICAIQAVMEGFNV-VTLDEIVDKGDFFITCTGNVD----VIKL--EHLLKMKNNAVV 106 (163)
T ss_dssp HHHHHHHHHHHHTCEEEEECSCHHHHHHHHTTTCEE-CCHHHHTTTCSEEEECCSSSS----SBCH--HHHTTCCTTCEE
T ss_pred cchhHHHHHHhCCCEEEEEecCchhhHHHHhcCCcc-CchhHccccCcEEEEcCCCCc----cccH--HHHHHhhCCeEE
Confidence 688999999999999999999997765555568776 579999999999999999754 2211 124458899999
Q ss_pred EEcCCCCch
Q psy764 82 IDSSTVDPQ 90 (286)
Q Consensus 82 id~st~~p~ 90 (286)
.+.+...-+
T Consensus 107 ~N~GHfd~E 115 (163)
T d1v8ba1 107 GNIGHFDDE 115 (163)
T ss_dssp EECSSTTTS
T ss_pred Eeccccchh
Confidence 998876544
|
| >d1mv8a3 c.26.3.1 (A:301-436) GDP-mannose 6-dehydrogenase, GDP-binding domain {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: GDP-mannose 6-dehydrogenase, GDP-binding domain species: Pseudomonas aeruginosa [TaxId: 287]
Probab=96.82 E-value=0.00096 Score=48.22 Aligned_cols=78 Identities=12% Similarity=0.189 Sum_probs=55.9
Q ss_pred HHHHHHHhCCCcEEEEcCCchHH-------HHH----HHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDAS-------QTL----AKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~-------~~l----~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
.++..|.+.|.+|.+||..-+.. +.+ ...+...++++.++++++|+||++++++ ..+++..
T Consensus 37 ~li~~L~~~g~~V~~~DP~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~i~~~D~ivi~t~h~-~f~~l~~------- 108 (136)
T d1mv8a3 37 ELAEMLIGKGYELRIFDRNVEYARVHGANKEYIESKIPHVSSLLVSDLDEVVASSDVLVLGNGDE-LFVDLVN------- 108 (136)
T ss_dssp HHHHHHHHTTCEEEEECHHHHHHTTSSSCHHHHHHTSHHHHTTBCSCHHHHHHHCSEEEECSCCG-GGHHHHH-------
T ss_pred HHHHHHhhhhccccccCCCCCHHHHhhhhhhhhhhccccccceeehhhhhhhhhceEEEEEeCCH-HHHHHHH-------
Confidence 57888999999999999632211 111 1124567889999999999999999986 4555443
Q ss_pred cCCCCCEEEEcCCCCch
Q psy764 74 HAKPGVIVIDSSTVDPQ 90 (286)
Q Consensus 74 ~l~~g~ivid~st~~p~ 90 (286)
.+.++++|+|+-.+.+.
T Consensus 109 ~~~~~~~I~D~~~~~~~ 125 (136)
T d1mv8a3 109 KTPSGKKLVDLVGFMPH 125 (136)
T ss_dssp SCCTTCEEEESSSCCSS
T ss_pred HhcCCCEEEECCCCCCh
Confidence 24578899998776554
|
| >d1qmga2 c.2.1.6 (A:82-307) Class II ketol-acid reductoisomerase (KARI) {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Class II ketol-acid reductoisomerase (KARI) species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=96.71 E-value=0.0021 Score=49.66 Aligned_cols=78 Identities=17% Similarity=0.165 Sum_probs=58.0
Q ss_pred cHHHHHHHHhCC------CcEEEEcC-CchHHHHHHHcCCcc----cCCHHHHhhcCcEEEEecCChhHHHHHhcCCccc
Q psy764 3 STLKLFFLQFQG------HDVIVYDK-NTDASQTLAKEGANM----ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGI 71 (286)
Q Consensus 3 G~~lA~~L~~~G------~~V~~~dr-~~~~~~~l~~~g~~~----~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l 71 (286)
|.+-|.||..+| ..|.+-=| .....++..+.|..+ ..+..|+++.+|+|++.+||. .-.+++.. +
T Consensus 56 G~AhAlNLrDSG~~~~sgv~V~VGLr~gs~S~~kA~~dGf~v~~~~v~~v~EAv~~ADiVmiLlPDe-~Q~~vy~~---I 131 (226)
T d1qmga2 56 APAQAQNLKDSLTEAKSDVVVKIGLRKGSNSFAEARAAGFSEENGTLGDMWETISGSDLVLLLISDS-AQADNYEK---V 131 (226)
T ss_dssp HHHHHHHHHHHHHHTTCCCEEEEEECTTCSCHHHHHHTTCCGGGTCEEEHHHHHHTCSEEEECSCHH-HHHHHHHH---H
T ss_pred HHHHHHhChhhcccccCCceEEEEeCCCChhHHHHHHcCCccCCCcccCHHHHHhhCCEEEEecchH-HHHHHHHH---H
Confidence 678899999955 55666533 334456666778763 347899999999999999974 55667753 8
Q ss_pred cccCCCCCEEEEc
Q psy764 72 LKHAKPGVIVIDS 84 (286)
Q Consensus 72 ~~~l~~g~ivid~ 84 (286)
.+++++|+.+.-.
T Consensus 132 ~p~Lk~G~~L~Fa 144 (226)
T d1qmga2 132 FSHMKPNSILGLS 144 (226)
T ss_dssp HHHSCTTCEEEES
T ss_pred HHhcCCCceeeec
Confidence 9999999988754
|
| >d1omoa_ c.2.1.13 (A:) Archaeal alanine dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Archaeal alanine dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.71 E-value=0.00088 Score=55.78 Aligned_cols=68 Identities=15% Similarity=0.256 Sum_probs=52.9
Q ss_pred CcEEEEcCCchHHHHHHH----cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCCCch
Q psy764 15 HDVIVYDKNTDASQTLAK----EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTVDPQ 90 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~----~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~~p~ 90 (286)
.+|.+|+|++++.+.+.+ .+..+..++.+++.+||||++|.+.. +.++. .+.+++|..|.-.++..|.
T Consensus 151 ~~i~v~~r~~e~~~~~~~~~~~~~~~~~~~~~~a~~~aDiV~taT~s~---~P~~~-----~~~l~~G~hv~~iGs~~p~ 222 (320)
T d1omoa_ 151 GEVKAYDVREKAAKKFVSYCEDRGISASVQPAEEASRCDVLVTTTPSR---KPVVK-----AEWVEEGTHINAIGADGPG 222 (320)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCCEEECCHHHHTSSSEEEECCCCS---SCCBC-----GGGCCTTCEEEECSCCSTT
T ss_pred hhcccccCCHHHHHHHHHHHHhcCCccccchhhhhccccEEEEeccCc---ccccc-----hhhcCCCCeEeecCCcccc
Confidence 489999999999877654 46777888999999999999999864 33443 2357899999888776664
|
| >d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Phenylalanine dehydrogenase species: Rhodococcus sp., M4 [TaxId: 1831]
Probab=96.70 E-value=0.0013 Score=50.79 Aligned_cols=98 Identities=9% Similarity=0.109 Sum_probs=67.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||..+|+.|.+.|.+|+++|.+++++......|....+ +.++. ..|||++-|=-...--++.. +.+ +-++
T Consensus 38 VG~~~A~~L~~~Gakvvv~d~d~~~~~~~~~~g~~~~~-~~~~~~~~~DI~iPcA~~~~I~~~~a-------~~i-~ak~ 108 (201)
T d1c1da1 38 VGGSLASLAAEAGAQLLVADTDTERVAHAVALGHTAVA-LEDVLSTPCDVFAPCAMGGVITTEVA-------RTL-DCSV 108 (201)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCEECC-GGGGGGCCCSEEEECSCSCCBCHHHH-------HHC-CCSE
T ss_pred HHHHHHHHHHHCCCEEEEecchHHHHHHHHhhcccccC-ccccccccceeeecccccccccHHHH-------hhh-hhhe
Confidence 78999999999999999999999999888888877664 45555 48998886643221112222 222 2367
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
|+.... .|.+.+...+.+.++|+.|++-
T Consensus 109 i~e~AN-~p~~~~~~~~~L~~rgI~~iPD 136 (201)
T d1c1da1 109 VAGAAN-NVIADEAASDILHARGILYAPD 136 (201)
T ss_dssp ECCSCT-TCBCSHHHHHHHHHTTCEECCH
T ss_pred eeccCC-CCcchhhHHHHhcccceEEEeh
Confidence 765544 3444445566788999988753
|
| >d1j6ua1 c.5.1.1 (A:0-88) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Thermotoga maritima [TaxId: 2336]
Probab=96.62 E-value=0.0014 Score=43.54 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=36.7
Q ss_pred HHHHHHHHhCCCcEEEEcCCc-hHHHHHHHcCCcccCC-HHHHhhcCcEEEEe
Q psy764 4 TLKLFFLQFQGHDVIVYDKNT-DASQTLAKEGANMALS-LSTLASGAEFIISM 54 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~-~~~~~l~~~g~~~~~s-~~e~~~~adivi~~ 54 (286)
+++|+.|.++|+.|+++|+++ +..++|.+.|+++... -.+-+++.|+||..
T Consensus 15 s~LA~~L~~~G~~VsGSD~~~~~~t~~L~~~Gi~i~~gh~~~~i~~~d~vV~S 67 (89)
T d1j6ua1 15 SAVALHEFSNGNDVYGSNIEETERTAYLRKLGIPIFVPHSADNWYDPDLVIKT 67 (89)
T ss_dssp HHHHHHHHHTTCEEEEECSSCCHHHHHHHHTTCCEESSCCTTSCCCCSEEEEC
T ss_pred HHHHHHHHhCCCeEEEEeCCCChhHHHHHHCCCeEEeeecccccCCCCEEEEe
Confidence 368999999999999999875 5567788889876432 22334566766554
|
| >d2d59a1 c.2.1.8 (A:4-142) Hypothetical protein PH1109 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein PH1109 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.56 E-value=0.0027 Score=45.94 Aligned_cols=93 Identities=14% Similarity=0.149 Sum_probs=67.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.|....++|.+.||+|+..|.+.+.+ .|..+..++.|+-...|++++++| ++.+.+++++ +.. .....++
T Consensus 34 ~g~~v~~~L~~~g~~v~pVnP~~~~i-----~G~~~~~sl~dlp~~iD~v~i~vp-~~~~~~~~~e---~~~-~g~k~v~ 103 (139)
T d2d59a1 34 DANIVMKYLLEHGYDVYPVNPKYEEV-----LGRKCYPSVLDIPDKIEVVDLFVK-PKLTMEYVEQ---AIK-KGAKVVW 103 (139)
T ss_dssp HHHHHHHHHHHTTCEEEEECTTCSEE-----TTEECBSSGGGCSSCCSEEEECSC-HHHHHHHHHH---HHH-HTCSEEE
T ss_pred chHHHHHHHHHCCCEEEEECCccccc-----CCCcccccccccCccceEEEEEeC-HHHHHHHHHH---HHH-hCCCEEE
Confidence 36678899999999998888765432 388899999999889999999999 5677777764 332 2334566
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+..++..+ +..+.+.+.|+.++.
T Consensus 104 ~~~G~~~e----e~~~~a~~~gi~vig 126 (139)
T d2d59a1 104 FQYNTYNR----EASKKADEAGLIIVA 126 (139)
T ss_dssp ECTTCCCH----HHHHHHHHTTCEEEE
T ss_pred EeccccCH----HHHHHHHHCCCEEEc
Confidence 65555443 345566778887774
|
| >d1ydwa1 c.2.1.3 (A:6-133,A:305-360) Probable oxidoreductase At4g09670 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Probable oxidoreductase At4g09670 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.52 E-value=0.011 Score=44.48 Aligned_cols=99 Identities=13% Similarity=0.185 Sum_probs=68.4
Q ss_pred ccHHHHHHHHhC-CCcEE-EEcCCchHHHHHHHc-C----CcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCcccc
Q psy764 2 ISTLKLFFLQFQ-GHDVI-VYDKNTDASQTLAKE-G----ANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~-~~dr~~~~~~~l~~~-g----~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
||...+..|.+. +++|. ++|+++++.+.+.+. + .+..++++++++ +.|+|++|.|+....+.+..
T Consensus 12 ~g~~~~~~l~~~~~~~i~ai~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~iD~v~I~tp~~~h~~~~~~------ 85 (184)
T d1ydwa1 12 IARKVSRAIHLAPNATISGVASRSLEKAKAFATANNYPESTKIHGSYESLLEDPEIDALYVPLPTSLHVEWAIK------ 85 (184)
T ss_dssp THHHHHHHHHHCTTEEEEEEECSSHHHHHHHHHHTTCCTTCEEESSHHHHHHCTTCCEEEECCCGGGHHHHHHH------
T ss_pred HHHHHHHHHHhCCCCEEEEEEeCCccccccchhccccccceeecCcHHHhhhccccceeeecccchhhcchhhh------
Confidence 677777778765 45765 679999998887653 4 456789999985 57899999998766655443
Q ss_pred ccCCCCC-EEEEc-CCCCchHHHHHHHHHHhcCCceE
Q psy764 73 KHAKPGV-IVIDS-STVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 73 ~~l~~g~-ivid~-st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
.+..|+ ++++- -+.++.+.+++.+...+.+..+.
T Consensus 86 -~l~~g~~v~~EKP~~~~~~e~~~l~~~~~~~~~~~~ 121 (184)
T d1ydwa1 86 -AAEKGKHILLEKPVAMNVTEFDKIVDACEANGVQIM 121 (184)
T ss_dssp -HHTTTCEEEECSSCSSSHHHHHHHHHHHHTTTCCEE
T ss_pred -hhhccceeecccccccCHHHHHHHHHHHHhhCCEEE
Confidence 234455 44553 23467788888888777665443
|
| >d1nyta1 c.2.1.7 (A:102-271) Shikimate 5-dehydrogenase AroE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Escherichia coli [TaxId: 562]
Probab=96.45 E-value=0.0053 Score=45.84 Aligned_cols=100 Identities=18% Similarity=0.122 Sum_probs=62.7
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----CCcccCCHHH-HhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLAKE----GANMALSLST-LASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e-~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
+.+++..|.+.|.+|+++||++++.+.+.+. +.....+..+ ....+|+||-|.|..-. .+...- -...+.+
T Consensus 30 arai~~al~~~g~~i~I~nRt~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~dliIN~Tp~G~~-~~~~~~---~~~~~~~ 105 (170)
T d1nyta1 30 SRGVLLPLLSLDCAVTITNRTVSRAEELAKLFAHTGSIQALSMDELEGHEFDLIINATSSGIS-GDIPAI---PSSLIHP 105 (170)
T ss_dssp HHHHHHHHHHTTCEEEEECSSHHHHHHHHHHTGGGSSEEECCSGGGTTCCCSEEEECCSCGGG-TCCCCC---CGGGCCT
T ss_pred HHHHHHHhcccceEEEeccchHHHHHHHHHHHhhcccccccccccccccccceeecccccCcc-cCCCCC---cHHHhcc
Confidence 4567888899999999999999999888754 2111122222 23578999999986532 111110 1234678
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCc-eEe
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQIT-FLD 108 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~-~~~ 108 (286)
+.+++|+--....| .+.+..+++|.. +++
T Consensus 106 ~~~v~D~vY~P~~T--~ll~~A~~~G~~~~i~ 135 (170)
T d1nyta1 106 GIYCYDMFYQKGKT--PFLAWCEQRGSKRNAD 135 (170)
T ss_dssp TCEEEESCCCSSCC--HHHHHHHHTTCCEEEC
T ss_pred CcEEEEeecCCCCC--HHHHHHHHcCCCcccC
Confidence 89999986554443 234455667764 454
|
| >d1x7da_ c.2.1.13 (A:) Ornithine cyclodeaminase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Ornithine cyclodeaminase-like domain: Ornithine cyclodeaminase species: Pseudomonas putida [TaxId: 303]
Probab=96.32 E-value=0.0016 Score=54.48 Aligned_cols=70 Identities=17% Similarity=0.267 Sum_probs=51.3
Q ss_pred CcEEEEcCCchHHHHHHHc-----CC--cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 15 HDVIVYDKNTDASQTLAKE-----GA--NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 15 ~~V~~~dr~~~~~~~l~~~-----g~--~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.+|.+|||++++.+++.+. |. ..++++++++++||||++|.+++ ....++. ...+++|..|.-.++-
T Consensus 154 ~~V~v~~r~~~~~~~~~~~l~~~~g~~v~~~~s~~eav~~ADIi~t~Tas~-s~~Pv~~-----~~~l~pG~hI~aiGs~ 227 (340)
T d1x7da_ 154 EEIVAYDTDPLATAKLIANLKEYSGLTIRRASSVAEAVKGVDIITTVTADK-AYATIIT-----PDMLEPGMHLNAVGGD 227 (340)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTCTTCEEEECSSHHHHHTTCSEEEECCCCS-SEEEEEC-----GGGCCTTCEEEECSCC
T ss_pred eeeEEEecChHHHHHHHHhhhhccCCCceecCCHHHHHhcCCceeeccccC-CCCcccc-----hhhcCCCCEEeecccc
Confidence 3799999999988877542 43 45889999999999999999753 2223443 2347788888777766
Q ss_pred Cch
Q psy764 88 DPQ 90 (286)
Q Consensus 88 ~p~ 90 (286)
.|.
T Consensus 228 ~p~ 230 (340)
T d1x7da_ 228 CPG 230 (340)
T ss_dssp BTT
T ss_pred hhh
Confidence 554
|
| >d1hdoa_ c.2.1.2 (A:) Biliverdin IX beta reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Biliverdin IX beta reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.26 E-value=0.00062 Score=52.70 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=41.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc-------cCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM-------ALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~-------~~s~~e~~~~adivi~~v~~ 57 (286)
+|+.+++.|+++||+|+++.|++++.......++++ .+++.++++++|+||.++..
T Consensus 15 iG~~v~~~Ll~~g~~V~~~~R~~~~~~~~~~~~~~~~~gD~~d~~~l~~al~~~d~vi~~~g~ 77 (205)
T d1hdoa_ 15 TGLTTLAQAVQAGYEVTVLVRDSSRLPSEGPRPAHVVVGDVLQAADVDKTVAGQDAVIVLLGT 77 (205)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCGGGSCSSSCCCSEEEESCTTSHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHHCcCEEEEEEcChhhcccccccccccccccccchhhHHHHhcCCCEEEEEecc
Confidence 799999999999999999999998865443333221 23455667788888877753
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=96.08 E-value=0.0034 Score=42.25 Aligned_cols=52 Identities=19% Similarity=0.154 Sum_probs=36.2
Q ss_pred HHHHHHHHhCCCcEEEEcCC-chHHHHHHHcCCcccC-CHHHHhhcCcEEEEec
Q psy764 4 TLKLFFLQFQGHDVIVYDKN-TDASQTLAKEGANMAL-SLSTLASGAEFIISML 55 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~-~~~~~~l~~~g~~~~~-s~~e~~~~adivi~~v 55 (286)
++||+.|.++||+|+++|+. ....+.+.+.|+.+.. ...+-+.+.|+||..-
T Consensus 22 s~LA~~L~~~G~~VsGSD~~~~~~~~~L~~~Gi~v~~g~~~~~i~~~d~vV~S~ 75 (96)
T d1p3da1 22 SGIAEILLNEGYQISGSDIADGVVTQRLAQAGAKIYIGHAEEHIEGASVVVVSS 75 (96)
T ss_dssp HHHHHHHHHHTCEEEEEESCCSHHHHHHHHTTCEEEESCCGGGGTTCSEEEECT
T ss_pred HHHHHHHHhCCCEEEEEeCCCChhhhHHHHCCCeEEECCccccCCCCCEEEECC
Confidence 67899999999999999986 4456777777876543 2233345666665543
|
| >d1npya1 c.2.1.7 (A:103-269) Shikimate 5-dehydrogenase-like protein HI0607 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase-like protein HI0607 species: Haemophilus influenzae [TaxId: 727]
Probab=95.99 E-value=0.0042 Score=46.33 Aligned_cols=100 Identities=12% Similarity=0.158 Sum_probs=62.7
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChh--HHHHHhcCCccc-cccCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQ--DVLDAYDGSDGI-LKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~--~~~~v~~~~~~l-~~~l~ 76 (286)
.+.+++..|.+.|. +|.++||++++.+.+.+. +.....+.. ..++|+||-|.|-.- ...+.-. .+ ...++
T Consensus 28 aarai~~aL~~~g~~~I~I~nR~~~ka~~L~~~~~~~~~~~~~--~~~~DliINaTpiGm~~~~~~~~l---~~~~~~~~ 102 (167)
T d1npya1 28 MAKAVVAAFKNSGFEKLKIYARNVKTGQYLAALYGYAYINSLE--NQQADILVNVTSIGMKGGKEEMDL---AFPKAFID 102 (167)
T ss_dssp THHHHHHHHHHTTCCCEEEECSCHHHHHHHHHHHTCEEESCCT--TCCCSEEEECSSTTCTTSTTTTSC---SSCHHHHH
T ss_pred HHHHHHHHHHHCCCCEEEEecccHHHHHHHHHhhhhhhhhccc--ccchhhheeccccCCccccccccc---cccHhhcC
Confidence 46788889999996 799999999999988654 444333222 257899999988321 0000000 01 11245
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
++.+|+|+.-.... +. +.+..++.|...++
T Consensus 103 ~~~~v~D~vY~P~~-T~-ll~~A~~~G~~~i~ 132 (167)
T d1npya1 103 NASVAFDVVAMPVE-TP-FIRYAQARGKQTIS 132 (167)
T ss_dssp HCSEEEECCCSSSS-CH-HHHHHHHTTCEEEC
T ss_pred CcceEEEEeeccCC-CH-HHHHHHHCCCeEEE
Confidence 67899998554433 32 34556778877665
|
| >d1b0aa1 c.2.1.7 (A:123-288) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Escherichia coli [TaxId: 562]
Probab=95.91 E-value=0.0059 Score=45.26 Aligned_cols=63 Identities=19% Similarity=0.158 Sum_probs=41.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
+|.+++.-|.+.|..|++.+.. +.++.+..+++|+||+++..+.- +. .+.+++|.++
T Consensus 49 VG~Pla~lL~~~gatVt~~h~~--------------t~~l~~~~~~ADivI~a~G~p~~----i~-----~~~vk~g~vv 105 (166)
T d1b0aa1 49 VGRPMSMELLLAGCTTTVTHRF--------------TKNLRHHVENADLLIVAVGKPGF----IP-----GDWIKEGAIV 105 (166)
T ss_dssp THHHHHHHHHTTTCEEEEECSS--------------CSCHHHHHHHCSEEEECSCCTTC----BC-----TTTSCTTCEE
T ss_pred ccHHHHHHHHHhhccccccccc--------------cchhHHHHhhhhHhhhhccCccc----cc-----ccccCCCcEE
Confidence 4555555555555555555432 24677788999999999997643 21 2347899999
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
||.+..
T Consensus 106 IDvGi~ 111 (166)
T d1b0aa1 106 IDVGIN 111 (166)
T ss_dssp EECCCE
T ss_pred EecCce
Confidence 998754
|
| >d1xeaa1 c.2.1.3 (A:2-122,A:267-312) Putative oxidoreductase VCA1048 {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Putative oxidoreductase VCA1048 species: Vibrio cholerae [TaxId: 666]
Probab=95.86 E-value=0.022 Score=41.99 Aligned_cols=92 Identities=14% Similarity=0.144 Sum_probs=63.2
Q ss_pred HHHHhC-CCcEEEEcCCchHHHHHHHc-CC-cccCCHHHHhh-cCcEEEEecCChhHHHHHhcCCccccccCCCCC-EEE
Q psy764 8 FFLQFQ-GHDVIVYDKNTDASQTLAKE-GA-NMALSLSTLAS-GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV-IVI 82 (286)
Q Consensus 8 ~~L~~~-G~~V~~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~-~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~-ivi 82 (286)
..|.+. +.++.++|+++++.+.+.+. +. ..+++.+++++ +.|+|++|+|+....+.+.. . +..|+ +++
T Consensus 19 ~~l~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ll~~~iD~V~I~tp~~~H~~~~~~----a---l~~gk~V~~ 91 (167)
T d1xeaa1 19 PVLAQWPDIELVLCTRNPKVLGTLATRYRVSATCTDYRDVLQYGVDAVMIHAATDVHSTLAAF----F---LHLGIPTFV 91 (167)
T ss_dssp HHHTTSTTEEEEEECSCHHHHHHHHHHTTCCCCCSSTTGGGGGCCSEEEECSCGGGHHHHHHH----H---HHTTCCEEE
T ss_pred HHHHhCCCcEEEEEECCHHHHHHHHHhcccccccccHHHhcccccceeccccccccccccccc----c---ccccccccc
Confidence 344444 45788999999999888664 54 45678888775 57999999998766555543 2 23343 666
Q ss_pred Ec-CCCCchHHHHHHHHHHhcCCce
Q psy764 83 DS-STVDPQVPQTLSNLAREKQITF 106 (286)
Q Consensus 83 d~-st~~p~~~~~~~~~~~~~g~~~ 106 (286)
+- -+.+....+++.+...+++..+
T Consensus 92 EKP~~~~~~e~~~l~~~a~~~~~~~ 116 (167)
T d1xeaa1 92 DKPLAASAQECENLYELAEKHHQPL 116 (167)
T ss_dssp ESCSCSSHHHHHHHHHHHHHTTCCE
T ss_pred CCCCcCCHHHHHHHHHHHHHcCCEE
Confidence 64 2456777888888877777654
|
| >d1a4ia1 c.2.1.7 (A:127-296) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.78 E-value=0.0099 Score=44.24 Aligned_cols=40 Identities=23% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEEEEcCCC
Q psy764 39 LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 39 ~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ivid~st~ 87 (286)
.++.+..+++|++|++++.+.-++ ...+++|.+|||.+..
T Consensus 74 ~~l~~~~~~aDivi~a~G~~~~i~---------~~~vk~g~iviDvgi~ 113 (170)
T d1a4ia1 74 AHLDEEVNKGDILVVATGQPEMVK---------GEWIKPGAIVIDCGIN 113 (170)
T ss_dssp SSHHHHHTTCSEEEECCCCTTCBC---------GGGSCTTCEEEECCCB
T ss_pred ccHHHHHhhccchhhccccccccc---------cccccCCCeEeccCcc
Confidence 456677889999999999764311 2357899999999764
|
| >d1iuka_ c.2.1.8 (A:) Hypothetical protein TT1466 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Hypothetical protein TT1466 species: Thermus thermophilus [TaxId: 274]
Probab=95.68 E-value=0.0048 Score=44.37 Aligned_cols=95 Identities=18% Similarity=0.271 Sum_probs=67.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.|....++|.+.||++..++.++... .+ .|.....++.++-...|++++++| ++.+.+++.+ ... +....+|
T Consensus 28 ~g~~v~~~L~~~g~~~~~v~~~~~~~-~i--~g~~~~~~l~~i~~~iD~v~v~~p-~~~v~~~v~~---~~~-~g~k~i~ 99 (136)
T d1iuka_ 28 PAHYVPRYLREQGYRVLPVNPRFQGE-EL--FGEEAVASLLDLKEPVDILDVFRP-PSALMDHLPE---VLA-LRPGLVW 99 (136)
T ss_dssp HHHHHHHHHHHTTCEEEEECGGGTTS-EE--TTEECBSSGGGCCSCCSEEEECSC-HHHHTTTHHH---HHH-HCCSCEE
T ss_pred chHHHHHHHhcCCCCceEEEeccccc-ee--eceecccchhhccCCCceEEEecc-HHHHHHHHHH---HHh-hCCCeEE
Confidence 46678889999999999998765311 11 377888999999888999999999 5666666653 222 2344566
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+...... .++.+.+++.|+.++.
T Consensus 100 ~q~G~~~----~e~~~~a~~~Gi~vV~ 122 (136)
T d1iuka_ 100 LQSGIRH----PEFEKALKEAGIPVVA 122 (136)
T ss_dssp ECTTCCC----HHHHHHHHHTTCCEEE
T ss_pred EecCccC----HHHHHHHHHcCCEEEc
Confidence 6544432 3456777888998874
|
| >d1zh8a1 c.2.1.3 (A:4-131,A:276-328) Hypothetical protein TM0312 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Hypothetical protein TM0312 species: Thermotoga maritima [TaxId: 2336]
Probab=95.57 E-value=0.066 Score=39.88 Aligned_cols=92 Identities=16% Similarity=0.197 Sum_probs=61.8
Q ss_pred HHHHHhCC--CcEE-EEcCCchHHHHHHHc-CC-cccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 7 LFFLQFQG--HDVI-VYDKNTDASQTLAKE-GA-NMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 7 A~~L~~~G--~~V~-~~dr~~~~~~~l~~~-g~-~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
...+.+.+ ++|. ++|+++++++.+.+. +. ..++|.+|+++ +.|+|++|+|+....+.+.. . +..|+
T Consensus 20 ~~~l~~~~~~~~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~ell~~~~id~v~I~tp~~~h~~~~~~----a---l~~gk 92 (181)
T d1zh8a1 20 LPALKNLSHLFEITAVTSRTRSHAEEFAKMVGNPAVFDSYEELLESGLVDAVDLTLPVELNLPFIEK----A---LRKGV 92 (181)
T ss_dssp HHHHHTTTTTEEEEEEECSSHHHHHHHHHHHSSCEEESCHHHHHHSSCCSEEEECCCGGGHHHHHHH----H---HHTTC
T ss_pred HHHHHhCCCCeEEEEEEeccHhhhhhhhccccccceeeeeeccccccccceeecccccccccccccc----c---cccch
Confidence 44555533 3544 789999999887654 54 56789999986 47899999997655544433 2 33444
Q ss_pred -EEEEc-CCCCchHHHHHHHHHHhcCCc
Q psy764 80 -IVIDS-STVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 80 -ivid~-st~~p~~~~~~~~~~~~~g~~ 105 (286)
++++- -+.+..+.+++.+...+.+..
T Consensus 93 ~V~~EKPl~~~~~e~~~l~~~~~~~~~~ 120 (181)
T d1zh8a1 93 HVICEKPISTDVETGKKVVELSEKSEKT 120 (181)
T ss_dssp EEEEESSSSSSHHHHHHHHHHHHHCSSC
T ss_pred hhhcCCCCcCCHHHHHHHHHHHHHhCCe
Confidence 55664 245677888888877776654
|
| >d1yb1a_ c.2.1.2 (A:) 17-beta-hydroxysteroid dehydrogenase type XI {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 17-beta-hydroxysteroid dehydrogenase type XI species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.54 E-value=0.011 Score=46.82 Aligned_cols=77 Identities=12% Similarity=0.165 Sum_probs=52.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||..+|+.|+++|.+|.+++|++++++++.+. ..+.-.++-.+.+=+.+++.++.++.. +.+...+=.++
T Consensus 19 IG~~ia~~la~~G~~V~l~~r~~~~l~~~~~~-------~~~~~~~~~~~~~Dvs~~~~v~~~~~~---i~~~~g~idil 88 (244)
T d1yb1a_ 19 IGRLTAYEFAKLKSKLVLWDINKHGLEETAAK-------CKGLGAKVHTFVVDCSNREDIYSSAKK---VKAEIGDVSIL 88 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHTCCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEeeCCCHHHHHHHHHH---HHHHcCCCcee
Confidence 79999999999999999999999988877543 111111233344445677777777653 44444455777
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|+.....
T Consensus 89 innag~~ 95 (244)
T d1yb1a_ 89 VNNAGVV 95 (244)
T ss_dssp EECCCCC
T ss_pred Eeecccc
Confidence 8776543
|
| >d1mlda1 c.2.1.5 (A:1-144) Malate dehydrogenase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=95.50 E-value=0.041 Score=39.60 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=41.1
Q ss_pred CccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHcC---------CcccCCHHHHhhcCcEEEEecC
Q psy764 1 MISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKEG---------ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 1 ~~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g---------~~~~~s~~e~~~~adivi~~v~ 56 (286)
.||+++|..|+.+|. ++.++|.++.+.+.+--.. .....+..+.+++||+|+++-.
T Consensus 11 ~VG~~~A~~l~~~~~~~elvLiDi~~~~~~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~aDivVitag 77 (144)
T d1mlda1 11 GIGQPLSLLLKNSPLVSRLTLYDIAHTPGVAADLSHIETRATVKGYLGPEQLPDCLKGCDVVVIPAG 77 (144)
T ss_dssp TTHHHHHHHHHTCTTCSEEEEEESSSHHHHHHHHTTSSSSCEEEEEESGGGHHHHHTTCSEEEECCS
T ss_pred hHHHHHHHHHHhCCccceEEEEeccccchhhHHHhhhhhhcCCCeEEcCCChHHHhCCCCEEEECCC
Confidence 389999999999886 7999999887655442211 1223456788899999999865
|
| >d1p77a1 c.2.1.7 (A:102-272) Shikimate 5-dehydrogenase AroE {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Haemophilus influenzae [TaxId: 727]
Probab=95.48 E-value=0.0039 Score=46.72 Aligned_cols=98 Identities=12% Similarity=0.038 Sum_probs=57.8
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-C----CcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLAKE-G----ANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g----~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
+.+++..|.+.+-+|+++||++++++.+.+. + +............+|+||-|+|.... .....- ....+++
T Consensus 30 arai~~aL~~~~~~i~I~nR~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~diiIN~tp~g~~-~~~~~~---~~~~~~~ 105 (171)
T d1p77a1 30 TKGVLLPLLQAQQNIVLANRTFSKTKELAERFQPYGNIQAVSMDSIPLQTYDLVINATSAGLS-GGTASV---DAEILKL 105 (171)
T ss_dssp HHTTHHHHHHTTCEEEEEESSHHHHHHHHHHHGGGSCEEEEEGGGCCCSCCSEEEECCCC--------CC---CHHHHHH
T ss_pred HHHHHHHHcccCceeeeccchHHHHHHHHHHHhhccccchhhhccccccccceeeeccccccc-ccccch---hhhhhcc
Confidence 4566677777778999999999999888653 1 11222122234689999999996522 111110 1223456
Q ss_pred CCEEEEcCCCCchHHHHHHHHHHhcCCc
Q psy764 78 GVIVIDSSTVDPQVPQTLSNLAREKQIT 105 (286)
Q Consensus 78 g~ivid~st~~p~~~~~~~~~~~~~g~~ 105 (286)
+.+++|..=..|..+.- .+..++.|..
T Consensus 106 ~~~~~D~vy~~p~~T~~-l~~A~~~g~~ 132 (171)
T d1p77a1 106 GSAFYDMQYAKGTDTPF-IALCKSLGLT 132 (171)
T ss_dssp CSCEEESCCCTTSCCHH-HHHHHHTTCC
T ss_pred cceeeeeeccCcccHHH-HHHHHHcCCC
Confidence 78899986555654432 3445566764
|
| >d1ydea1 c.2.1.2 (A:4-253) Retinal dehydrogenase/reductase 3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Retinal dehydrogenase/reductase 3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.35 E-value=0.011 Score=46.90 Aligned_cols=71 Identities=18% Similarity=0.217 Sum_probs=49.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.||++++.+.+.+..-. +..+..=+.++++++.++.. +.+...+=+++
T Consensus 18 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~~~~-----------~~~~~~Dvs~~~~v~~~~~~---~~~~~g~iDil 83 (250)
T d1ydea1 18 IGAGIVRAFVNSGARVVICDKDESGGRALEQELPG-----------AVFILCDVTQEDDVKTLVSE---TIRRFGRLDCV 83 (250)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHCTT-----------EEEEECCTTSHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcCC-----------CeEEEccCCCHHHHHHHHHH---HHHhcCCCCEE
Confidence 79999999999999999999999998887665321 12222335677778777764 44333344677
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|+...
T Consensus 84 VnnAG 88 (250)
T d1ydea1 84 VNNAG 88 (250)
T ss_dssp EECCC
T ss_pred Eeccc
Confidence 77654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.32 E-value=0.051 Score=40.06 Aligned_cols=79 Identities=18% Similarity=0.185 Sum_probs=55.2
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCccc-----CCHHHHhh--------cCcEEEEecCChhHHHHHhcC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMA-----LSLSTLAS--------GAEFIISMLPASQDVLDAYDG 67 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-----~s~~e~~~--------~adivi~~v~~~~~~~~v~~~ 67 (286)
||...+.-+...|. +|+++|+++++.+.+.+.|+... .++.+..+ ..|+||-|++.+..++..+.
T Consensus 38 iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~~Ga~~~~~~~~~~~~~~~~~~~~~~g~g~Dvvid~~G~~~~~~~a~~- 116 (171)
T d1pl8a2 38 IGMVTLLVAKAMGAAQVVVTDLSATRLSKAKEIGADLVLQISKESPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIY- 116 (171)
T ss_dssp HHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHTTCSEEEECSSCCHHHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHH-
T ss_pred cHHHHHHHHHHcCCceEEeccCCHHHHHHHHHhCCcccccccccccccccccccccCCCCceEEEeccCCchhHHHHHH-
Confidence 56777777777888 79999999999998888886432 24444332 57999999998766665543
Q ss_pred CccccccCCCCCEEEEcCCC
Q psy764 68 SDGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 68 ~~~l~~~l~~g~ivid~st~ 87 (286)
.++++..++-.+..
T Consensus 117 ------~~~~gG~iv~~G~~ 130 (171)
T d1pl8a2 117 ------ATRSGGTLVLVGLG 130 (171)
T ss_dssp ------HSCTTCEEEECSCC
T ss_pred ------HhcCCCEEEEEecC
Confidence 35566666655543
|
| >d2csua1 c.2.1.8 (A:1-129) Acetate-CoA ligase alpha chain, AcdA, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Acetate-CoA ligase alpha chain, AcdA, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.31 E-value=0.006 Score=43.40 Aligned_cols=96 Identities=13% Similarity=0.097 Sum_probs=62.3
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.|..+.++|.+.| ++|+..|.+.+.+ .|.....|+.|+=...|++++++| ++.+.+++.+ ..+ ..-..+
T Consensus 23 ~g~~v~~~L~~~~~g~v~pVnP~~~~i-----~G~~~y~sl~dlp~~vDlvvi~vp-~~~~~~~~~~---~~~-~g~~~~ 92 (129)
T d2csua1 23 LGYEVFKNLKEYKKGKVYPVNIKEEEV-----QGVKAYKSVKDIPDEIDLAIIVVP-KRFVKDTLIQ---CGE-KGVKGV 92 (129)
T ss_dssp HHHHHHHHHTTCCSSEEEEECSSCSEE-----TTEECBSSTTSCSSCCSEEEECSC-HHHHHHHHHH---HHH-HTCCEE
T ss_pred cHHHHHHHHHHcCCCcEEEeccCcccc-----CCeEeecchhhcCCCCceEEEecC-hHHhHHHHHH---HHH-cCCCEE
Confidence 3566888887766 6899888876543 488999999999889999999999 5677777764 332 222334
Q ss_pred EEEcCCCC--chHH----HHHHHHHHhcCCceE
Q psy764 81 VIDSSTVD--PQVP----QTLSNLAREKQITFL 107 (286)
Q Consensus 81 vid~st~~--p~~~----~~~~~~~~~~g~~~~ 107 (286)
|+-.+... .... +++.+...+.|++++
T Consensus 93 vi~s~Gf~e~~~~~~~~~~~l~~~a~~~girv~ 125 (129)
T d2csua1 93 VIITAGFGETGEEGKREEKELVEIAHKYGMRII 125 (129)
T ss_dssp EECCCSSTTSCHHHHHHHHHHHHHHHHHTCEEE
T ss_pred EEecccccccchhhHHHHHHHHHHHHHcCCEEe
Confidence 44333211 1112 234455566677766
|
| >d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylene-tetrahydromethanopterin dehydrogenase species: Methylobacterium extorquens [TaxId: 408]
Probab=95.19 E-value=0.009 Score=45.39 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=28.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
||..+|+.|++.|.+|.+.+|++++.+.+.+
T Consensus 35 IG~~ia~~la~~G~~V~~~~r~~~~~~~~~~ 65 (191)
T d1luaa1 35 VGMRSAALLAGEGAEVVLCGRKLDKAQAAAD 65 (191)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHH
T ss_pred HHHHHHHHHHhhccchhhcccchHHHHHHHH
Confidence 7999999999999999999999998877654
|
| >d1vi2a1 c.2.1.7 (A:107-288) Putative shikimate dehydrogenase YdiB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Putative shikimate dehydrogenase YdiB species: Escherichia coli [TaxId: 562]
Probab=95.17 E-value=0.019 Score=43.19 Aligned_cols=102 Identities=12% Similarity=0.127 Sum_probs=62.1
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc--------CCc--c--c---CCHHHHhhcCcEEEEecCChhHHHHHhc
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNTDASQTLAKE--------GAN--M--A---LSLSTLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--------g~~--~--~---~s~~e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
|.+++..|.+.|. +++++||++++.+++.+. ... . . .+..+....+|+||-|.|... .....
T Consensus 30 arai~~al~~~g~~~i~i~nR~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~diiIN~Tp~G~--~~~~~ 107 (182)
T d1vi2a1 30 STAIGAQGAIEGLKEIKLFNRRDEFFDKALAFAQRVNENTDCVVTVTDLADQQAFAEALASADILTNGTKVGM--KPLEN 107 (182)
T ss_dssp HHHHHHHHHHTTCSEEEEEECSSTTHHHHHHHHHHHHHHSSCEEEEEETTCHHHHHHHHHTCSEEEECSSTTS--TTSCS
T ss_pred HHHHHHHHhhcCCceEeeeccchHHHHHHHHHHHHHHhhcCcceEeeecccccchhhhhcccceeccccCCcc--ccccc
Confidence 5677888888887 799999998766554321 111 1 1 224456679999999998531 11111
Q ss_pred CC-ccccccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 67 GS-DGILKHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 67 ~~-~~l~~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
.. .--...++++.+++|+.-. |..+. +.+..+++|..+++
T Consensus 108 ~~~~~~~~~~~~~~~v~Di~Y~-p~~T~-ll~~a~~~g~~~i~ 148 (182)
T d1vi2a1 108 ESLVNDISLLHPGLLVTECVYN-PHMTK-LLQQAQQAGCKTID 148 (182)
T ss_dssp CCSCCCGGGSCTTCEEEECCCS-SSSCH-HHHHHHTTTCEEEC
T ss_pred hhhhhHHHhhhcchhhHHhhcC-ccccH-HHHHHHHCcCeEec
Confidence 00 0012346788999999643 44332 34455678888776
|
| >d1ez4a1 c.2.1.5 (A:16-162) Lactate dehydrogenase {Lactobacillus pentosus [TaxId: 1589]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Lactobacillus pentosus [TaxId: 1589]
Probab=95.16 E-value=0.029 Score=40.55 Aligned_cols=56 Identities=16% Similarity=0.188 Sum_probs=39.5
Q ss_pred ccHHHHHHHHhCC--CcEEEEcCCchHHHHHHH--------c--CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQG--HDVIVYDKNTDASQTLAK--------E--GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G--~~V~~~dr~~~~~~~l~~--------~--g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||.++|..|+.+| .+|.++|+++++.+.... . ......++++ +++||+||++...+
T Consensus 16 VG~~~A~~l~~~~~~~elvL~D~~~~~~~g~a~Dl~~a~~~~~~~~~~~~d~~~-~~~adivvitag~~ 83 (146)
T d1ez4a1 16 VGSSYAFAMAQQGIAEEFVIVDVVKDRTKGDALDLEDAQAFTAPKKIYSGEYSD-CKDADLVVITAGAP 83 (146)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHGGGGGSCCCEEEECCGGG-GTTCSEEEECCCC-
T ss_pred HHHHHHHHHHhcCCCcEEEEeecccchhHHHHHHHhccccccCCceEeeccHHH-hccccEEEEecccc
Confidence 6899999999888 489999999887643321 0 1233345554 58999999987644
|
| >d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Escherichia coli [TaxId: 562]
Probab=95.07 E-value=0.022 Score=44.96 Aligned_cols=72 Identities=13% Similarity=0.125 Sum_probs=48.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+++.+. .-.++..+.+=+.+++++++++.. +.+...+=+++
T Consensus 16 IG~a~a~~l~~~G~~Vv~~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iDil 82 (243)
T d1q7ba_ 16 IGRAIAETLAARGAKVIGTATSENGAQAISDY----------LGANGKGLMLNVTDPASIESVLEK---IRAEFGEVDIL 82 (243)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHHHH---HHHHTCSCSEE
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHH----------hCCCCcEEEEEecCHHHhhhhhhh---hhcccCCccee
Confidence 79999999999999999999999988777543 111222233335677777777764 44444344577
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|+...
T Consensus 83 VnnAg 87 (243)
T d1q7ba_ 83 VNNAG 87 (243)
T ss_dssp EECCC
T ss_pred hhhhh
Confidence 76654
|
| >d1l7da2 c.23.12.2 (A:1-143,A:327-377) Nicotinamide nucleotide transhydrogenase dI component {Rhodospirillum rubrum [TaxId: 1085]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: Nicotinamide nucleotide transhydrogenase dI component species: Rhodospirillum rubrum [TaxId: 1085]
Probab=95.04 E-value=0.065 Score=40.58 Aligned_cols=105 Identities=16% Similarity=0.166 Sum_probs=70.0
Q ss_pred HHHHHHhCCCcEEEEcCCch----HHHHHHHcCCcccCCHHHHhhcCcEEEEec-CChhHHHHHhcCCccccccCCCCCE
Q psy764 6 KLFFLQFQGHDVIVYDKNTD----ASQTLAKEGANMALSLSTLASGAEFIISML-PASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 6 lA~~L~~~G~~V~~~dr~~~----~~~~l~~~g~~~~~s~~e~~~~adivi~~v-~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
.++.|.+.||+|.+=.---. .=+...+.|+++.++.+++..++|+|+..- |... +.-. ...+.+++|++
T Consensus 22 ~vkkl~~~G~~V~vE~gaG~~a~fsD~~Y~~aGA~i~~~~~~~~~~~diilkV~~P~~~---e~~~---~ei~~lk~g~~ 95 (194)
T d1l7da2 22 VVKKLVGLGFEVIVEQGAGVGASITDDALTAAGATIASTAAQALSQADVVWKVQRPMTA---EEGT---DEVALIKEGAV 95 (194)
T ss_dssp HHHHHHHTTCEEEEETTTTGGGTCCHHHHHHTTCEEESSHHHHHSSCSEEEEEECCCCG---GGSC---CGGGGSCTTCE
T ss_pred HHHHHHHCCCEEEEEcCcccccCCCHHHHHHhhhhcchhhhhhhhcccceeEecCCccc---ccch---hHhhhccCceE
Confidence 46779999999997421100 114556789999999999999999776543 3221 1111 13456889999
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceEeccCCCCHHhh
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFLDAPVSGGTKAA 118 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a 118 (286)
+|. -..|....+..+.+.++++..++.-.......+
T Consensus 96 li~--~l~p~~~~~~~~~l~~~~it~~a~e~ipRisra 131 (194)
T d1l7da2 96 LMC--HLGALTNRPVVEALTKRKITAYAMELMPRISRA 131 (194)
T ss_dssp EEE--ECCGGGCHHHHHHHHHTTCEEEEGGGCCCSGGG
T ss_pred EEE--ecccccchhHHHHHHhcCceEEeeecccccCCC
Confidence 995 455766677778888899888876555443433
|
| >d1ulsa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus [TaxId: 274]
Probab=95.04 E-value=0.019 Score=45.23 Aligned_cols=71 Identities=15% Similarity=0.163 Sum_probs=48.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+++.+.- ++..+..=+.++++++.++.. +.+...+=+++
T Consensus 17 IG~aia~~l~~~G~~V~~~~r~~~~l~~~~~~~------------~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iDil 81 (242)
T d1ulsa_ 17 IGRATLELFAKEGARLVACDIEEGPLREAAEAV------------GAHPVVMDVADPASVERGFAE---ALAHLGRLDGV 81 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT------------TCEEEECCTTCHHHHHHHHHH---HHHHHSSCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHc------------CCeEEEEecCCHHHHHHHHHH---HHHhcCCceEE
Confidence 799999999999999999999999888776531 112233335677777777664 44433344577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+...+
T Consensus 82 VnnAG~ 87 (242)
T d1ulsa_ 82 VHYAGI 87 (242)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 776543
|
| >d2rhca1 c.2.1.2 (A:5-261) beta-keto acyl carrier protein reductase {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Streptomyces coelicolor [TaxId: 1902]
Probab=94.99 E-value=0.017 Score=45.97 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=48.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++++++.+. +.+.-.++..+-.=+.++++++.++.. +.+...+=+++
T Consensus 14 IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------l~~~g~~~~~~~~Dvs~~~~v~~~~~~---~~~~~g~iDil 83 (257)
T d2rhca1 14 IGLEIARRLGKEGLRVFVCARGEEGLRTTLKE-------LREAGVEADGRTCDVRSVPEIEALVAA---VVERYGPVDVL 83 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHTCSCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEeecCCHHHHHHHHHH---HHHHhCCCCEE
Confidence 79999999999999999999999887766442 111101122222234577777777764 44444344577
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|+...
T Consensus 84 VnnAG 88 (257)
T d2rhca1 84 VNNAG 88 (257)
T ss_dssp EECCC
T ss_pred Eeccc
Confidence 77654
|
| >d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.94 E-value=0.041 Score=43.30 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=47.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+++.+..- +...+.+=+.++++++.++.. +.+=+++
T Consensus 19 IG~aia~~la~~G~~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~d~~~v~~~~~~-------~g~iDil 80 (244)
T d1pr9a_ 19 IGRGTVQALHATGARVVAVSRTQADLDSLVRECP-----------GIEPVCVDLGDWEATERALGS-------VGPVDLL 80 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTT-------CCCCCEE
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHH-------hCCceEE
Confidence 7999999999999999999999998887765421 122333445677777777653 2233577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+....
T Consensus 81 VnnAg~ 86 (244)
T d1pr9a_ 81 VNNAAV 86 (244)
T ss_dssp EECCCC
T ss_pred Eecccc
Confidence 776543
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.91 E-value=0.02 Score=45.26 Aligned_cols=74 Identities=12% Similarity=0.117 Sum_probs=50.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+.+.+.- -..+..+-.=+.+++++++++.. +.+...+=+++
T Consensus 18 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~idil 84 (244)
T d1nffa_ 18 MGASHVRAMVAEGAKVVFGDILDEEGKAMAAEL----------ADAARYVHLDVTQPAQWKAAVDT---AVTAFGGLHVL 84 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHT----------GGGEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------hCcceEEEeecCCHHHHHHHHHH---HHHHhCCCeEE
Confidence 799999999999999999999999888775431 11222222225677778777764 44434444677
Q ss_pred EEcCCCC
Q psy764 82 IDSSTVD 88 (286)
Q Consensus 82 id~st~~ 88 (286)
|+.....
T Consensus 85 innAG~~ 91 (244)
T d1nffa_ 85 VNNAGIL 91 (244)
T ss_dssp EECCCCC
T ss_pred EECCccc
Confidence 7766543
|
| >d1gega_ c.2.1.2 (A:) meso-2,3-butanediol dehydrogenase {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: meso-2,3-butanediol dehydrogenase species: Klebsiella pneumoniae [TaxId: 573]
Probab=94.91 E-value=0.022 Score=45.28 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=48.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+++.+. +.+.-.++..+-.=+.++++++.++.. +.+...+=+++
T Consensus 13 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------i~~~g~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iDil 82 (255)
T d1gega_ 13 IGKAIALRLVKDGFAVAIADYNDATAKAVASE-------INQAGGHAVAVKVDVSDRDQVFAAVEQ---ARKTLGGFDVI 82 (255)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTSHHHHHHHHHH---HHHHTTCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEeeCCCHHHHHHHHHH---HHHHhCCccEE
Confidence 79999999999999999999999887766432 111101122222234566777777664 44444444677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+...+
T Consensus 83 VnnAG~ 88 (255)
T d1gega_ 83 VNNAGV 88 (255)
T ss_dssp EECCCC
T ss_pred Eecccc
Confidence 776544
|
| >d1xg5a_ c.2.1.2 (A:) Putative dehydrogenase ARPG836 (MGC4172) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative dehydrogenase ARPG836 (MGC4172) species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.89 E-value=0.029 Score=44.56 Aligned_cols=76 Identities=20% Similarity=0.195 Sum_probs=48.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|+++|++|.+++|++++.+++.+. +.+.-....++.+ =+.++++++.++.. +.+...+=+
T Consensus 22 IG~aiA~~la~~G~~Vv~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~Dls~~~~v~~~v~~---~~~~~g~iD 91 (257)
T d1xg5a_ 22 IGAAVARALVQQGLKVVGCARTVGNIEELAAE-------CKSAGYPGTLIPYRCDLSNEEDILSMFSA---IRSQHSGVD 91 (257)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCSSEEEEEECCTTCHHHHHHHHHH---HHHHHCCCS
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEEEccCCCHHHHHHHHHH---HHHhcCCCC
Confidence 79999999999999999999999988776532 1110011233322 25677777777764 443333335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|++...
T Consensus 92 ~lVnnAg~ 99 (257)
T d1xg5a_ 92 ICINNAGL 99 (257)
T ss_dssp EEEECCCC
T ss_pred EEEecccc
Confidence 67776543
|
| >d2ae2a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), II [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), II [TaxId: 4076]
Probab=94.81 E-value=0.023 Score=45.28 Aligned_cols=76 Identities=12% Similarity=0.089 Sum_probs=48.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC-CCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK-PGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~-~g~i 80 (286)
||.++|+.|+++|++|.+.+|++++.+++.+. +.+.-..+..+..=+.++++++.++.. +.+... +=++
T Consensus 20 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~~g~~~~~~~~Dv~~~~~v~~~~~~---~~~~~~~~idi 89 (259)
T d2ae2a_ 20 IGYGIVEELASLGASVYTCSRNQKELNDCLTQ-------WRSKGFKVEASVCDLSSRSERQELMNT---VANHFHGKLNI 89 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCEEEEEECCTTCHHHHHHHHHH---HHHHTTTCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEeeCCCHHHHHHHHHH---HHHHhCCCceE
Confidence 79999999999999999999999888766432 111111111222224567777777653 433333 3467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|+....
T Consensus 90 lvnnAG~ 96 (259)
T d2ae2a_ 90 LVNNAGI 96 (259)
T ss_dssp EEECCCC
T ss_pred EEECCce
Confidence 7776543
|
| >d1h6da1 c.2.1.3 (A:51-212,A:375-433) Glucose-fructose oxidoreductase, N-terminal domain {Zymomonas mobilis [TaxId: 542]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Glucose-fructose oxidoreductase, N-terminal domain species: Zymomonas mobilis [TaxId: 542]
Probab=94.71 E-value=0.064 Score=41.44 Aligned_cols=86 Identities=15% Similarity=0.168 Sum_probs=59.3
Q ss_pred CCcEE-EEcCCchHHHHHHHc-CC-----cccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC-EEEE
Q psy764 14 GHDVI-VYDKNTDASQTLAKE-GA-----NMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV-IVID 83 (286)
Q Consensus 14 G~~V~-~~dr~~~~~~~l~~~-g~-----~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~-ivid 83 (286)
+.+|. ++|+++++.+.+.+. |+ ..++|..++++ +.|+|++|+|+....+.+.. .+..|+ ++++
T Consensus 58 ~~~ivav~d~~~~~a~~~~~~~~i~~~~~~~~~d~~ell~~~~iD~V~I~tp~~~H~~~~~~-------al~~gk~v~~E 130 (221)
T d1h6da1 58 HSRIEALVSGNAEKAKIVAAEYGVDPRKIYDYSNFDKIAKDPKIDAVYIILPNSLHAEFAIR-------AFKAGKHVMCE 130 (221)
T ss_dssp SEEEEEEECSCHHHHHHHHHHTTCCGGGEECSSSGGGGGGCTTCCEEEECSCGGGHHHHHHH-------HHHTTCEEEEC
T ss_pred CceEEEEecCCHHHHHHHHHhhccccccccccCchhhhcccccceeeeeccchhhhhhHHHH-------hhhcchhhhcC
Confidence 45655 789999999888654 54 34678999886 57899999998765555443 233454 5555
Q ss_pred c-CCCCchHHHHHHHHHHhcCCce
Q psy764 84 S-STVDPQVPQTLSNLAREKQITF 106 (286)
Q Consensus 84 ~-st~~p~~~~~~~~~~~~~g~~~ 106 (286)
. -+.++.+..++.+...+.+..+
T Consensus 131 KPla~~~~e~~~l~~~a~~~~~~~ 154 (221)
T d1h6da1 131 KPMATSVADCQRMIDAAKAANKKL 154 (221)
T ss_dssp SSCCSSHHHHHHHHHHHHHHTCCE
T ss_pred CCccCCHHHHHHHHHHHHhcCCcE
Confidence 3 3557788888888777766544
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=94.65 E-value=0.09 Score=38.50 Aligned_cols=77 Identities=10% Similarity=0.085 Sum_probs=50.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-------CCHHHHh--------hcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-------LSLSTLA--------SGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-------~s~~e~~--------~~adivi~~v~~~~~~~~v~~ 66 (286)
||...+..+...|.+|+++|++++|.+.+.+.|+... .+..+.. ...|+||-|+..+..++..+.
T Consensus 38 vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~~~ga~~~~~~~~~~~~~~~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~ 117 (170)
T d1e3ja2 38 IGLVSVLAAKAYGAFVVCTARSPRRLEVAKNCGADVTLVVDPAKEEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGIN 117 (170)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEECCTTTSCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHH
T ss_pred cchhhHhhHhhhcccccccchHHHHHHHHHHcCCcEEEeccccccccchhhhhhhcccccCCceeeecCCChHHHHHHHH
Confidence 5777777777889999999999999988888775321 1222221 246888888877655555443
Q ss_pred CCccccccCCCCCEEEEcC
Q psy764 67 GSDGILKHAKPGVIVIDSS 85 (286)
Q Consensus 67 ~~~~l~~~l~~g~ivid~s 85 (286)
.++++..++..+
T Consensus 118 -------~~~~~G~iv~~G 129 (170)
T d1e3ja2 118 -------ITRTGGTLMLVG 129 (170)
T ss_dssp -------HSCTTCEEEECS
T ss_pred -------HHhcCCceEEEe
Confidence 244555555544
|
| >d1cyda_ c.2.1.2 (A:) Carbonyl reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.64 E-value=0.055 Score=42.46 Aligned_cols=68 Identities=21% Similarity=0.238 Sum_probs=47.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+++.+... +...+.+=+.++++++.+++. +.+=+++
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~-----------~~~~~~~Dv~~~~~v~~~~~~-------~g~iDil 78 (242)
T d1cyda_ 17 IGRDTVKALHASGAKVVAVTRTNSDLVSLAKECP-----------GIEPVCVDLGDWDATEKALGG-------IGPVDLL 78 (242)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHST-----------TCEEEECCTTCHHHHHHHHTT-------CCCCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHhcC-----------CCeEEEEeCCCHHHHHHHHHH-------cCCCeEE
Confidence 7999999999999999999999998887765421 122333335667777777653 2233577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+...+
T Consensus 79 VnnAg~ 84 (242)
T d1cyda_ 79 VNNAAL 84 (242)
T ss_dssp EECCCC
T ss_pred EECCcc
Confidence 776543
|
| >d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Leucine dehydrogenase species: Bacillus sphaericus [TaxId: 1421]
Probab=94.59 E-value=0.02 Score=44.71 Aligned_cols=98 Identities=13% Similarity=0.161 Sum_probs=66.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHH-hhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTL-ASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~-~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||..+|+.|.+.|.+|++.|.++++++.+... |....+ +.++ -..|||++-|--.. ++.. ...+.+ +-+
T Consensus 50 VG~~~a~~L~~~Gakvv~~d~~~~~~~~~~~~~g~~~~~-~~~~~~~~cDIl~PcA~~~-----~I~~--~~~~~l-~ak 120 (230)
T d1leha1 50 VAKALCKKLNTEGAKLVVTDVNKAAVSAAVAEEGADAVA-PNAIYGVTCDIFAPCALGA-----VLND--FTIPQL-KAK 120 (230)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCCEECC-GGGTTTCCCSEEEECSCSC-----CBST--THHHHC-CCS
T ss_pred HHHHHHHHHHHCCCEEEeecccHHHHHHHHHhcCCcccC-CcccccccccEeccccccc-----ccCh--HHhhcc-Ccc
Confidence 78999999999999999999999998877654 665554 4444 45899988775422 2221 112223 236
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceEec
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFLDA 109 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~~~ 109 (286)
+|+......|.+. +..+.+.++|+.|++.
T Consensus 121 ~Ive~ANn~~t~~-ea~~~L~~rGI~~iPD 149 (230)
T d1leha1 121 VIAGSADNQLKDP-RHGKYLHELGIVYAPD 149 (230)
T ss_dssp EECCSCSCCBSSH-HHHHHHHHHTCEECCH
T ss_pred EEEecccCCCCCc-hHHHHHHhhCcEEEee
Confidence 7777665555433 4567788899988753
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=94.55 E-value=0.031 Score=44.46 Aligned_cols=76 Identities=12% Similarity=-0.015 Sum_probs=48.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC-CCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-KPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l-~~g~i 80 (286)
||.++|+.|+++|++|.+.+|++++.+++.+. ..+.-..+..+.+=+.+++++++++.. +.+.. .+-.+
T Consensus 18 IG~aia~~la~~G~~V~i~~r~~~~l~~~~~~-------~~~~~~~~~~~~~D~s~~~~~~~~~~~---~~~~~~g~idi 87 (258)
T d1ae1a_ 18 IGYAIVEELAGLGARVYTCSRNEKELDECLEI-------WREKGLNVEGSVCDLLSRTERDKLMQT---VAHVFDGKLNI 87 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHTTSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCCceEEEeecCCHHHHHHHHHH---HHHHhCCCcEE
Confidence 79999999999999999999999887665432 111111223333445667777776653 33333 23457
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 88 linnag~ 94 (258)
T d1ae1a_ 88 LVNNAGV 94 (258)
T ss_dssp EEECCCC
T ss_pred Eeccccc
Confidence 7765543
|
| >d2c07a1 c.2.1.2 (A:54-304) beta-keto acyl carrier protein reductase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=94.49 E-value=0.024 Score=44.93 Aligned_cols=75 Identities=12% Similarity=0.166 Sum_probs=47.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++++++.+. +.+.-.++..+..=+.++++++.++.. +.+...+=+++
T Consensus 22 IG~a~a~~la~~Ga~V~~~~r~~~~l~~~~~~-------l~~~g~~~~~~~~Dvt~~~~v~~~~~~---~~~~~g~iDil 91 (251)
T d2c07a1 22 IGREIAKMLAKSVSHVICISRTQKSCDSVVDE-------IKSFGYESSGYAGDVSKKEEISEVINK---ILTEHKNVDIL 91 (251)
T ss_dssp HHHHHHHHHTTTSSEEEEEESSHHHHHHHHHH-------HHTTTCCEEEEECCTTCHHHHHHHHHH---HHHHCSCCCEE
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHHHH---HHHhcCCceee
Confidence 79999999999999999999999887766542 111001122233334667777777764 44434344567
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|+...
T Consensus 92 vnnag 96 (251)
T d2c07a1 92 VNNAG 96 (251)
T ss_dssp EECCC
T ss_pred eeccc
Confidence 76543
|
| >d1pjca2 c.23.12.2 (A:1-135,A:304-361) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Formate/glycerate dehydrogenase catalytic domain-like family: L-alanine dehydrogenase-like domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=94.48 E-value=0.12 Score=38.96 Aligned_cols=94 Identities=13% Similarity=0.121 Sum_probs=62.6
Q ss_pred HHHHHHhCCCcEEEEcCCch----HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 6 KLFFLQFQGHDVIVYDKNTD----ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 6 lA~~L~~~G~~V~~~dr~~~----~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
.++.|.+.||+|++=.---. .=+...+.|+++.++.+++. ++|+|+. |..|.. + -.+.+++|+++
T Consensus 22 ~vkkl~~~G~~V~VE~gaG~~a~fsD~~Y~~aGa~i~~~~~~~~-~~diilk-v~~p~~-~--------e~~~lk~~~~l 90 (193)
T d1pjca2 22 SVRTLVEAGHTVFIETQAGIGAGFADQDYVQAGAQVVPSAKDAW-SREMVVK-VKEPLP-A--------EYDLMQKDQLL 90 (193)
T ss_dssp HHHHHHTTTCEEEEETTTTGGGTCCHHHHHHHTCEEESSHHHHH-TSSEEEC-SSCCCG-G--------GGGGCCTTCEE
T ss_pred HHHHHHHCCCEEEEEcCcccccCCCHHHHHhhcceeeecccccc-ccceEEE-eccCCH-H--------HHHhhhcCceE
Confidence 46778999999997411100 11345667999999988877 5897764 433321 1 23457899999
Q ss_pred EEcCCCCchHHHHHHHHHHhcCCceEeccCC
Q psy764 82 IDSSTVDPQVPQTLSNLAREKQITFLDAPVS 112 (286)
Q Consensus 82 id~st~~p~~~~~~~~~~~~~g~~~~~~pv~ 112 (286)
| |-..|....++.+.+.++++..++.-..
T Consensus 91 i--~~l~p~~~~ell~~l~~~~it~~s~E~i 119 (193)
T d1pjca2 91 F--TYLHLAAARELTEQLMRVGLTAIAYETV 119 (193)
T ss_dssp E--ECCCGGGCHHHHHHHHHHTCEEEEGGGC
T ss_pred E--EecCcccchHHHHHHHHcCCEEEEeeec
Confidence 9 4556666677788888889888775433
|
| >d1fmca_ c.2.1.2 (A:) 7-alpha-hydroxysteroid dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 7-alpha-hydroxysteroid dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.47 E-value=0.027 Score=44.76 Aligned_cols=76 Identities=18% Similarity=0.162 Sum_probs=47.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+++.+. +.+.-.++..+-.=+.++++++.++.. +.+...+=+++
T Consensus 23 IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~-------l~~~g~~~~~~~~Dvs~~~~~~~~~~~---~~~~~g~iDil 92 (255)
T d1fmca_ 23 IGKEIAITFATAGASVVVSDINADAANHVVDE-------IQQLGGQAFACRCDITSEQELSALADF---AISKLGKVDIL 92 (255)
T ss_dssp HHHHHHHHHHTTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHHSSCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHcCCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCCEe
Confidence 79999999999999999999999887766432 111101122222224566777776654 43333344577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+...+
T Consensus 93 vnnAG~ 98 (255)
T d1fmca_ 93 VNNAGG 98 (255)
T ss_dssp EECCCC
T ss_pred eeCCcC
Confidence 776544
|
| >d1hdca_ c.2.1.2 (A:) 3-alpha,20-beta-hydroxysteroid dehydrogenase {Streptomyces hydrogenans [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3-alpha,20-beta-hydroxysteroid dehydrogenase species: Streptomyces hydrogenans [TaxId: 1905]
Probab=94.42 E-value=0.029 Score=44.52 Aligned_cols=73 Identities=10% Similarity=0.005 Sum_probs=49.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+++.+.- -.++..+..=+.+++++++++.. +.+...+=+++
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~----------~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iDil 83 (254)
T d1hdca_ 17 LGAEAARQAVAAGARVVLADVLDEEGAATAREL----------GDAARYQHLDVTIEEDWQRVVAY---AREEFGSVDGL 83 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTT----------GGGEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----------CCceEEEEcccCCHHHHHHHHHH---HHHHcCCccEE
Confidence 799999999999999999999998887765431 11222333335677778777764 44433344577
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+...+
T Consensus 84 VnnAg~ 89 (254)
T d1hdca_ 84 VNNAGI 89 (254)
T ss_dssp EECCCC
T ss_pred EecCcc
Confidence 776544
|
| >d1bdba_ c.2.1.2 (A:) Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase {Pseudomonas sp., lb400 [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Cis-biphenyl-2,3-dihydrodiol-2,3-dehydrogenase species: Pseudomonas sp., lb400 [TaxId: 306]
Probab=94.27 E-value=0.033 Score=44.73 Aligned_cols=72 Identities=14% Similarity=0.077 Sum_probs=48.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+++.+. .-.++..+..-+.++++++.++.. +.+...+=+++
T Consensus 17 IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~----------~~~~~~~~~~Dv~~~~~~~~~~~~---~~~~~g~idil 83 (276)
T d1bdba_ 17 LGRALVDRFVAEGAKVAVLDKSAERLAELETD----------HGDNVLGIVGDVRSLEDQKQAASR---CVARFGKIDTL 83 (276)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH----------HGGGEEEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH----------cCCCeeEEecccccHHHHHHHHHH---HHHHhCCcccc
Confidence 79999999999999999999999888766542 112233334445666677776653 44434344566
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|+...
T Consensus 84 vnnAG 88 (276)
T d1bdba_ 84 IPNAG 88 (276)
T ss_dssp ECCCC
T ss_pred ccccc
Confidence 66544
|
| >d1iy8a_ c.2.1.2 (A:) Levodione reductase {Corynebacterium aquaticum [TaxId: 144185]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Levodione reductase species: Corynebacterium aquaticum [TaxId: 144185]
Probab=94.21 E-value=0.057 Score=42.81 Aligned_cols=76 Identities=9% Similarity=0.080 Sum_probs=49.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEe--cCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISM--LPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~--v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|+++|++|.+.+|++++.+...+. ..+...+..++.+. +.++++++.++.. +.+...+=+
T Consensus 16 IG~aia~~la~~Ga~V~i~~r~~~~l~~~~~~-------~~~~~~~~~~~~~~~Dvt~~~~v~~~~~~---~~~~~G~iD 85 (258)
T d1iy8a_ 16 LGRATAVRLAAEGAKLSLVDVSSEGLEASKAA-------VLETAPDAEVLTTVADVSDEAQVEAYVTA---TTERFGRID 85 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHCTTCCEEEEECCTTSHHHHHHHHHH---HHHHHSCCS
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhhCCCCeEEEEeccCCCHHHHHHHHHH---HHHHhCCCC
Confidence 79999999999999999999999887765432 11111223444332 4567777777764 444333446
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|+...+
T Consensus 86 iLVnnAG~ 93 (258)
T d1iy8a_ 86 GFFNNAGI 93 (258)
T ss_dssp EEEECCCC
T ss_pred EEEECCcc
Confidence 77776543
|
| >d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Xylitol dehydrogenase species: Gluconobacter oxydans [TaxId: 442]
Probab=94.20 E-value=0.026 Score=44.93 Aligned_cols=73 Identities=14% Similarity=0.190 Sum_probs=47.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|+++|++|.+.||++++.+++.+. +.+ ...++..+ =+.++++++.++.. +.+...+=+
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~--~g~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iD 84 (260)
T d1zema1 17 IGLATALRLAEEGTAIALLDMNREALEKAEAS-------VRE--KGVEARSYVCDVTSEEAVIGTVDS---VVRDFGKID 84 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHT--TTSCEEEEECCTTCHHHHHHHHHH---HHHHHSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHh--cCCcEEEEEccCCCHHHHHHHHHH---HHHHhCCCC
Confidence 79999999999999999999999887766532 111 11223222 24667777777764 433333345
Q ss_pred EEEEcCC
Q psy764 80 IVIDSST 86 (286)
Q Consensus 80 ivid~st 86 (286)
++|+...
T Consensus 85 ilVnnaG 91 (260)
T d1zema1 85 FLFNNAG 91 (260)
T ss_dssp EEEECCC
T ss_pred eehhhhc
Confidence 6776544
|
| >d1k2wa_ c.2.1.2 (A:) Sorbitol dehydrogenase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sorbitol dehydrogenase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.17 E-value=0.03 Score=44.47 Aligned_cols=72 Identities=18% Similarity=0.139 Sum_probs=47.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|+++|++|.+.+|++++.+++.+. |. ++..+..=+.++++++.++.. +.+...+=++
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~~~~-----------~~~~~~~Dvt~~~~v~~~~~~---~~~~~g~iDi 82 (256)
T d1k2wa_ 17 IGRAFAEAYVREGARVAIADINLEAARATAAEIGP-----------AACAIALDVTDQASIDRCVAE---LLDRWGSIDI 82 (256)
T ss_dssp HHHHHHHHHHHTTEEEEEEESCHHHHHHHHHHHCT-----------TEEEEECCTTCHHHHHHHHHH---HHHHHSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------ceEEEEeeCCCHHHHHHHHHH---HHHHhCCccE
Confidence 79999999999999999999999988777543 21 111222224567777777654 4333334456
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|+....
T Consensus 83 lVnnAg~ 89 (256)
T d1k2wa_ 83 LVNNAAL 89 (256)
T ss_dssp EEECCCC
T ss_pred EEeeccc
Confidence 6765443
|
| >d1hxha_ c.2.1.2 (A:) 3beta/17beta hydroxysteroid dehydrogenase {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 3beta/17beta hydroxysteroid dehydrogenase species: Comamonas testosteroni [TaxId: 285]
Probab=94.13 E-value=0.031 Score=44.34 Aligned_cols=72 Identities=18% Similarity=0.210 Sum_probs=47.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|+++|++|.+.+|++++.+++.+. +. ++-.+-.=+.++.+++.++.. +.+...+=++
T Consensus 18 IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~~-----------~~~~~~~Dv~~~~~~~~~~~~---~~~~~g~iDi 83 (253)
T d1hxha_ 18 VGLEVVKLLLGEGAKVAFSDINEAAGQQLAAELGE-----------RSMFVRHDVSSEADWTLVMAA---VQRRLGTLNV 83 (253)
T ss_dssp HHHHHHHHHHHTTCEEEEECSCHHHHHHHHHHHCT-----------TEEEECCCTTCHHHHHHHHHH---HHHHHCSCCE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhCC-----------CeEEEEeecCCHHHHHHHHHH---HHHHhCCCCe
Confidence 79999999999999999999999988777543 21 111111124566677777654 4333334467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|+...+
T Consensus 84 lVnnAG~ 90 (253)
T d1hxha_ 84 LVNNAGI 90 (253)
T ss_dssp EEECCCC
T ss_pred EEecccc
Confidence 7776543
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.12 E-value=0.04 Score=41.12 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=27.6
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGAN 36 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~ 36 (286)
||...+..+...|. +|++.|+++++.+.+.+.|+.
T Consensus 40 iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~lGa~ 75 (182)
T d1vj0a2 40 LGLFGVVIARSLGAENVIVIAGSPNRLKLAEEIGAD 75 (182)
T ss_dssp HHHHHHHHHHHTTBSEEEEEESCHHHHHHHHHTTCS
T ss_pred cchhheecccccccccccccccccccccccccccce
Confidence 46666666677786 799999999999888887753
|
| >d1f06a1 c.2.1.3 (A:1-118,A:269-320) Diaminopimelic acid dehydrogenase (DAPDH) {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Diaminopimelic acid dehydrogenase (DAPDH) species: Corynebacterium glutamicum [TaxId: 1718]
Probab=94.09 E-value=0.02 Score=42.55 Aligned_cols=92 Identities=11% Similarity=0.103 Sum_probs=58.0
Q ss_pred ccHHHHHHHHhC-CCc-EEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQ-GHD-VIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~-V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||+..+..|.+. +++ |.++||++++.. ..+.....+..+...+.|+|++|.|+....+.+. +.+..|+
T Consensus 14 ig~~~~~~l~~~~~~elvav~~~~~~~~~---~~~~~~~~~~~~~~~~~D~Vvi~tp~~~h~~~a~-------~aL~aG~ 83 (170)
T d1f06a1 14 LGRSVEKLIAKQPDMDLVGIFSRRATLDT---KTPVFDVADVDKHADDVDVLFLCMGSATDIPEQA-------PKFAQFA 83 (170)
T ss_dssp HHHHHHHHHTTCSSEEEEEEEESSSCCSS---SSCEEEGGGGGGTTTTCSEEEECSCTTTHHHHHH-------HHHTTTS
T ss_pred HHHHHHHHHHhCCCcEEEEEEeccccccc---ccccccchhhhhhccccceEEEeCCCcccHHHHH-------HHHHCCC
Confidence 677778888764 455 446798876532 2345556677777889999999999765444332 3467788
Q ss_pred EEEEcCCC---CchHHHHHHHHHHhcC
Q psy764 80 IVIDSSTV---DPQVPQTLSNLAREKQ 103 (286)
Q Consensus 80 ivid~st~---~p~~~~~~~~~~~~~g 103 (286)
-+|.+... .++..+++.+..++.|
T Consensus 84 ~vv~~~~~~~~~~~~~~~l~~~A~~~~ 110 (170)
T d1f06a1 84 CTVDTYDNHRDIPRHRQVMNEAATAAG 110 (170)
T ss_dssp EEECCCCCGGGHHHHHHHHHHHHHHHT
T ss_pred cEEEecCccccCHHHHHHHHHHHHhcC
Confidence 77765432 2344445544444434
|
| >d1pzga1 c.2.1.5 (A:14-163) Lactate dehydrogenase {Toxoplasma gondii [TaxId: 5811]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Toxoplasma gondii [TaxId: 5811]
Probab=93.87 E-value=0.04 Score=40.14 Aligned_cols=55 Identities=18% Similarity=0.250 Sum_probs=40.8
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc--------C----CcccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE--------G----ANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--------g----~~~~~s~~e~~~~adivi~~v~ 56 (286)
+|.++|..|..+++ ++.++|+++++++..+.. + .....+.+++++++|+|+++..
T Consensus 18 VG~~lA~~l~~~~~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~~~~adiVvitag 85 (154)
T d1pzga1 18 IGGTMGYLCALRELADVVLYDVVKGMPEGKALDLSHVTSVVDTNVSVRAEYSYEAALTGADCVIVTAG 85 (154)
T ss_dssp HHHHHHHHHHHHTCCEEEEECSSSSHHHHHHHHHHHHHHHTTCCCCEEEECSHHHHHTTCSEEEECCS
T ss_pred HHHHHHHHHHhCCCceEEEEEeccccchhHHHHHhhhccccCCeeEEeccCchhhhhcCCCeEEEecc
Confidence 68899988888886 899999998775443221 1 2234567788899999999884
|
| >d1ldna1 c.2.1.5 (A:15-162) Lactate dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.65 E-value=0.033 Score=40.33 Aligned_cols=56 Identities=16% Similarity=0.160 Sum_probs=39.9
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHH----Hc------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLA----KE------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~----~~------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||.++|..|+.+|. ++.++|+++++++... .. ...+..+..+.+++||+|+++...
T Consensus 17 vG~~~a~~l~~~~l~~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~~~~~d~~~l~daDvvvitag~ 84 (148)
T d1ldna1 17 VGASYVFALMNQGIADEIVLIDANESKAIGDAMDFNHGKVFAPKPVDIWHGDYDDCRDADLVVICAGA 84 (148)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHTTSSSSCCEEEECCGGGTTTCSEEEECCSC
T ss_pred HHHHHHHHHHhcCCCceEEEEeeccccccchhccHhhCccccCCCeEEEECCHHHhccceeEEEeccc
Confidence 68899999998886 7999999988753322 11 233334445677899999998754
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=93.54 E-value=0.077 Score=39.31 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=44.0
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCccc-----CCHHHHhh------cCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMA-----LSLSTLAS------GAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-----~s~~e~~~------~adivi~~v~~~~~~~~v~~ 66 (286)
||...+..+...|. +|++.|++++|.+.+.+.|+..+ +++.+.+. ..|+||-|+..+..+++.+.
T Consensus 39 vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~lGa~~~i~~~~~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~ 115 (174)
T d1jqba2 39 VGLMGIAGAKLRGAGRIIGVGSRPICVEAAKFYGATDILNYKNGHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVK 115 (174)
T ss_dssp HHHHHHHHHHTTTCSCEEEECCCHHHHHHHHHHTCSEEECGGGSCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHH
T ss_pred chhhhhhhhhcccccccccccchhhhHHHHHhhCccccccccchhHHHHHHHHhhccCcceEEEccCCHHHHHHHHH
Confidence 46666666677786 79999999999988888886432 22333221 37888888877655565543
|
| >d1zk4a1 c.2.1.2 (A:1-251) R-specific alcohol dehydrogenase {Lactobacillus brevis [TaxId: 1580]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: R-specific alcohol dehydrogenase species: Lactobacillus brevis [TaxId: 1580]
Probab=93.49 E-value=0.041 Score=43.50 Aligned_cols=75 Identities=13% Similarity=0.140 Sum_probs=49.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+.+.+.- ... .++..+-.=+.++++++.++.. +.+...+=+++
T Consensus 18 IG~aia~~la~~Ga~V~~~~r~~~~~~~~~~~~----~~~----~~~~~~~~Dv~~~~~v~~~~~~---~~~~~G~iDiL 86 (251)
T d1zk4a1 18 IGLAIATKFVEEGAKVMITGRHSDVGEKAAKSV----GTP----DQIQFFQHDSSDEDGWTKLFDA---TEKAFGPVSTL 86 (251)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----CCT----TTEEEEECCTTCHHHHHHHHHH---HHHHHSSCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh----CCC----CcEEEEEccCCCHHHHHHHHHH---HHHHhCCceEE
Confidence 799999999999999999999999887765431 000 1122222235677777777764 44434344677
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+....
T Consensus 87 VnnAg~ 92 (251)
T d1zk4a1 87 VNNAGI 92 (251)
T ss_dssp EECCCC
T ss_pred Eecccc
Confidence 776544
|
| >d1vl8a_ c.2.1.2 (A:) Gluconate 5-dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Gluconate 5-dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=93.37 E-value=0.051 Score=42.91 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=47.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEE--EecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFII--SMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi--~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|+++|++|.+.+|+.++.++..+. +.+-. +.++.. .=+.++++++.++.. +.+...+=+
T Consensus 17 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------l~~~~-g~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iD 85 (251)
T d1vl8a_ 17 LGFGIAQGLAEAGCSVVVASRNLEEASEAAQK-------LTEKY-GVETMAFRCDVSNYEEVKKLLEA---VKEKFGKLD 85 (251)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHH-CCCEEEEECCTTCHHHHHHHHHH---HHHHHSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHHh-CCcEEEEEccCCCHHHHHHHHHH---HHHHcCCCC
Confidence 79999999999999999999999887655321 11111 223322 234566777777664 444333446
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|+...+
T Consensus 86 iLVnnAG~ 93 (251)
T d1vl8a_ 86 TVVNAAGI 93 (251)
T ss_dssp EEEECCCC
T ss_pred EEEECCCC
Confidence 77776544
|
| >d2gdza1 c.2.1.2 (A:3-256) 15-hydroxyprostaglandin dehydrogenase, PGDH {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 15-hydroxyprostaglandin dehydrogenase, PGDH species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.14 E-value=0.036 Score=43.88 Aligned_cols=80 Identities=18% Similarity=0.145 Sum_probs=50.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.++..+.-..... . .++..+..=+.+++++++++.. +.+...+=+++
T Consensus 15 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~~~~-~----~~~~~~~~Dv~~~~~v~~~~~~---~~~~~G~iDil 86 (254)
T d2gdza1 15 IGRAFAEALLLKGAKVALVDWNLEAGVQCKAALHEQFE-P----QKTLFIQCDVADQQQLRDTFRK---VVDHFGRLDIL 86 (254)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHTTTSC-G----GGEEEEECCTTSHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcC-C----CcEEEEEeecCCHHHHHHHHHH---HHHHcCCcCee
Confidence 79999999999999999999999987766542100000 0 1112222235677778877764 44433344678
Q ss_pred EEcCCCCc
Q psy764 82 IDSSTVDP 89 (286)
Q Consensus 82 id~st~~p 89 (286)
|+.....+
T Consensus 87 VnnAg~~~ 94 (254)
T d2gdza1 87 VNNAGVNN 94 (254)
T ss_dssp EECCCCCC
T ss_pred cccccccc
Confidence 87765543
|
| >d1id1a_ c.2.1.9 (A:) Rck domain from putative potassium channel Kch {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Rck domain from putative potassium channel Kch species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.19 Score=36.07 Aligned_cols=96 Identities=13% Similarity=0.094 Sum_probs=57.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHH----HHHHcCCccc-CC--HHHH-----hhcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQ----TLAKEGANMA-LS--LSTL-----ASGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~----~l~~~g~~~~-~s--~~e~-----~~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
+|..+++.|.+.|++|++.+.++++.. .+...|+.+. .+ -.+. ++++|.+|++.+++..-..+..
T Consensus 14 ~g~~l~~~L~~~~~~v~vId~d~~~~~~~~~~~~~~~~~vi~Gd~~d~~~L~~a~i~~a~~vi~~~~~d~~n~~~~~--- 90 (153)
T d1id1a_ 14 LAINTILQLNQRGQNVTVISNLPEDDIKQLEQRLGDNADVIPGDSNDSSVLKKAGIDRCRAILALSDNDADNAFVVL--- 90 (153)
T ss_dssp HHHHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHCTTCEEEESCTTSHHHHHHHTTTTCSEEEECSSCHHHHHHHHH---
T ss_pred HHHHHHHHHHHcCCCEEEEeccchhHHHHHHHhhcCCcEEEEccCcchHHHHHhccccCCEEEEccccHHHHHHHHH---
Confidence 588999999999999999999987543 3333354322 11 1222 4579999999997654333332
Q ss_pred cccccCCCC-CEEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 70 GILKHAKPG-VIVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 70 ~l~~~l~~g-~ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
....+.+. ++++-+. .+.... .+...|+.++
T Consensus 91 -~~r~~~~~~~iia~~~--~~~~~~----~l~~~Gad~v 122 (153)
T d1id1a_ 91 -SAKDMSSDVKTVLAVS--DSKNLN----KIKMVHPDII 122 (153)
T ss_dssp -HHHHHTSSSCEEEECS--SGGGHH----HHHTTCCSEE
T ss_pred -HHHHhCCCCceEEEEc--CHHHHH----HHHHCCCCEE
Confidence 22233344 5665433 344333 3455676555
|
| >d1xq1a_ c.2.1.2 (A:) Tropinone reductase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=93.13 E-value=0.061 Score=42.69 Aligned_cols=76 Identities=7% Similarity=-0.117 Sum_probs=46.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccC-CCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHA-KPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l-~~g~i 80 (286)
||.++|+.|+++|++|.+.+|++++++++.+. ..+.-.++..+..=+.++++++.++.. +.+.. .+=++
T Consensus 20 IG~aiA~~la~~Ga~V~~~~r~~~~l~~~~~~-------~~~~~~~~~~~~~Dv~~~~~v~~~~~~---~~~~~~g~idi 89 (259)
T d1xq1a_ 20 IGHAIVEEFAGFGAVIHTCARNEYELNECLSK-------WQKKGFQVTGSVCDASLRPEREKLMQT---VSSMFGGKLDI 89 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHTTCCEEEEECCTTSHHHHHHHHHH---HHHHHTTCCSE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHhcCCceEEEeccCCCHHHHHHHHHH---HHHHhCCCccc
Confidence 79999999999999999999999887766442 111001111222225566677776653 33322 12356
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|+...+
T Consensus 90 lvnnAG~ 96 (259)
T d1xq1a_ 90 LINNLGA 96 (259)
T ss_dssp EEEECCC
T ss_pred ccccccc
Confidence 7766544
|
| >d2bgka1 c.2.1.2 (A:11-278) Rhizome secoisolariciresinol dehydrogenase {Mayapple (Podophyllum peltatum) [TaxId: 35933]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Rhizome secoisolariciresinol dehydrogenase species: Mayapple (Podophyllum peltatum) [TaxId: 35933]
Probab=92.98 E-value=0.079 Score=42.14 Aligned_cols=73 Identities=16% Similarity=0.191 Sum_probs=47.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|+++|++|.+.+|++++.+++.+. +. . .....+-+=+.++++++.++.. +.+...+=++
T Consensus 18 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~l~~-----~----~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iD~ 85 (268)
T d2bgka1 18 IGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGS-----P----DVISFVHCDVTKDEDVRNLVDT---TIAKHGKLDI 85 (268)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHCC-----T----TTEEEEECCTTCHHHHHHHHHH---HHHHHSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhcC-----C----CceEEEEccCCCHHHHHHHHHH---HHHHcCCcce
Confidence 79999999999999999999999988777543 11 0 0111122224667777777764 4443334467
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
+|+...
T Consensus 86 lVnnAG 91 (268)
T d2bgka1 86 MFGNVG 91 (268)
T ss_dssp EEECCC
T ss_pred eccccc
Confidence 776554
|
| >d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR) species: Human (Homo sapiens), [TaxId: 9606]
Probab=92.86 E-value=0.076 Score=42.73 Aligned_cols=76 Identities=16% Similarity=0.176 Sum_probs=45.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh-hcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA-SGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~-~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|+++|++|++.+|+.++.++..+. +.+.. ..+..+-.-+.+.++++.++.. +......=.+
T Consensus 37 IG~aiA~~la~~Ga~Vii~~r~~~~l~~~~~~-------l~~~~g~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~iDi 106 (294)
T d1w6ua_ 37 LGKGMTTLLSSLGAQCVIASRKMDVLKATAEQ-------ISSQTGNKVHAIQCDVRDPDMVQNTVSE---LIKVAGHPNI 106 (294)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH-------HHHHHSSCEEEEECCTTCHHHHHHHHHH---HHHHTCSCSE
T ss_pred HHHHHHHHHHHcCCEEEEEECCHHHHHHHHHH-------HHHhcCCceEEEEecccChHHHHHHhhh---hhhhccccch
Confidence 79999999999999999999999887655432 11111 1111222334566666665543 3333333457
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|++...
T Consensus 107 lvnnAg~ 113 (294)
T d1w6ua_ 107 VINNAAG 113 (294)
T ss_dssp EEECCCC
T ss_pred hhhhhhh
Confidence 7776543
|
| >d2a4ka1 c.2.1.2 (A:2-242) beta-keto acyl carrier protein reductase {Thermus thermophilus, TTHB020 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermus thermophilus, TTHB020 [TaxId: 274]
Probab=92.84 E-value=0.06 Score=42.21 Aligned_cols=69 Identities=14% Similarity=0.085 Sum_probs=47.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++|+.|+++|++|.+.+|+.++.++..+. + .+++++ =+.+++++++++.. +.+...+=
T Consensus 17 IG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-------------~~~~~~~~Dls~~~~i~~~~~~---i~~~~g~i 80 (241)
T d2a4ka1 17 IGRAALDLFAREGASLVAVDREERLLAEAVAALE-------------AEAIAVVADVSDPKAVEAVFAE---ALEEFGRL 80 (241)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTCC-------------SSEEEEECCTTSHHHHHHHHHH---HHHHHSCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcC-------------CceEEEEecCCCHHHHHHHHHH---HHHHhCCc
Confidence 79999999999999999999999887766543 2 122222 25666777776654 44444445
Q ss_pred CEEEEcCC
Q psy764 79 VIVIDSST 86 (286)
Q Consensus 79 ~ivid~st 86 (286)
.++|+...
T Consensus 81 DiLinnAg 88 (241)
T d2a4ka1 81 HGVAHFAG 88 (241)
T ss_dssp CEEEEGGG
T ss_pred cEeccccc
Confidence 67776543
|
| >d1uxja1 c.2.1.5 (A:2-143) Malate dehydrogenase {Chloroflexus aurantiacus [TaxId: 1108]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chloroflexus aurantiacus [TaxId: 1108]
Probab=92.81 E-value=0.23 Score=35.34 Aligned_cols=56 Identities=13% Similarity=0.180 Sum_probs=39.4
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc----------C--CcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE----------G--ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~----------g--~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
+|.++|..|+.++. ++..+|+++++.+..... . +..+.+.++ ++++|+||++...+
T Consensus 12 VG~~~A~~l~~~~l~dl~l~D~~~~~~~~~~~Dl~~~~~~~~~~~~i~~~~d~~~-~~~advvvitag~~ 80 (142)
T d1uxja1 12 VGSTTAHWLAAKELGDIVLLDIVEGVPQGKALDLYEASPIEGFDVRVTGTNNYAD-TANSDVIVVTSGAP 80 (142)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCCEEEESCGGG-GTTCSEEEECCSCC
T ss_pred HHHHHHHHHHhCCcceEEEEeeccccchhHHHHhhccccccCCCCEEEecCcHHH-hcCCCEEEEeeecc
Confidence 68999999988776 899999998875432211 1 223455555 57999999998644
|
| >d2pd4a1 c.2.1.2 (A:2-275) Enoyl-ACP reductase {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Helicobacter pylori [TaxId: 210]
Probab=92.76 E-value=0.11 Score=41.27 Aligned_cols=75 Identities=9% Similarity=-0.007 Sum_probs=43.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|+++..+.+.+ ..+....+.+...-+.++..+++++.. +.....+-.++
T Consensus 19 IG~AiA~~la~~Ga~V~i~~r~~~~~~~~~~--------l~~~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~g~id~l 87 (274)
T d2pd4a1 19 IAYGIAQSCFNQGATLAFTYLNESLEKRVRP--------IAQELNSPYVYELDVSKEEHFKSLYNS---VKKDLGSLDFI 87 (274)
T ss_dssp HHHHHHHHHHTTTCEEEEEESSTTTHHHHHH--------HHHHTTCCCEEECCTTCHHHHHHHHHH---HHHHTSCEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH--------HHhhCCceeEeeecccchhhHHHHHHH---HHHHcCCCCeE
Confidence 7999999999999999999998643322221 111123344555555666666665543 33333333455
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|.....
T Consensus 88 V~nag~ 93 (274)
T d2pd4a1 88 VHSVAF 93 (274)
T ss_dssp EECCCC
T ss_pred Eeeccc
Confidence 554443
|
| >d2bd0a1 c.2.1.2 (A:2-241) Bacterial sepiapterin reductase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Bacterial sepiapterin reductase species: Chlorobium tepidum [TaxId: 1097]
Probab=92.74 E-value=0.065 Score=41.96 Aligned_cols=76 Identities=9% Similarity=0.071 Sum_probs=49.0
Q ss_pred ccHHHHHHHHhCCCc-------EEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQGHD-------VIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-------V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
||.++|+.|+++|++ |..++|++++.+++.+. ..+.-..+..+-.=+.++++++.++.. +.+.
T Consensus 13 IG~aia~~la~~G~~~~~~~~~v~~~~r~~~~l~~~~~~-------~~~~g~~~~~~~~Dvt~~~~v~~~~~~---~~~~ 82 (240)
T d2bd0a1 13 IGRAIALEFARAARHHPDFEPVLVLSSRTAADLEKISLE-------CRAEGALTDTITADISDMADVRRLTTH---IVER 82 (240)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEEEEESCHHHHHHHHHH-------HHTTTCEEEEEECCTTSHHHHHHHHHH---HHHH
T ss_pred HHHHHHHHHHHhCccccccCcEEEEEeCCHHHHHHHHHH-------HHhcCCcEEEEEecCCCHHHHHHHHHH---HHHH
Confidence 799999999999987 88999999988776532 010001122233336677777777764 4444
Q ss_pred CCCCCEEEEcCCC
Q psy764 75 AKPGVIVIDSSTV 87 (286)
Q Consensus 75 l~~g~ivid~st~ 87 (286)
..+=+++|+....
T Consensus 83 ~g~iDilvnnAg~ 95 (240)
T d2bd0a1 83 YGHIDCLVNNAGV 95 (240)
T ss_dssp TSCCSEEEECCCC
T ss_pred cCCcceeeccccc
Confidence 4444677776544
|
| >d1nvta1 c.2.1.7 (A:111-287) Shikimate 5-dehydrogenase AroE {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Shikimate 5-dehydrogenase AroE species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=92.71 E-value=0.05 Score=40.49 Aligned_cols=102 Identities=16% Similarity=0.136 Sum_probs=59.3
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-----CC-----cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccc
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLAKE-----GA-----NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGIL 72 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-----g~-----~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~ 72 (286)
+.+++..|.+.| +|+++||++++++.+.+. .. ....+.......+|++|-|.|.+..-..- ....--.
T Consensus 30 arai~~aL~~~~-~i~I~nR~~~ka~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~dliIn~tp~g~~~~~~-~~~~~~~ 107 (177)
T d1nvta1 30 ARAVAFELAKDN-NIIIANRTVEKAEALAKEIAEKLNKKFGEEVKFSGLDVDLDGVDIIINATPIGMYPNID-VEPIVKA 107 (177)
T ss_dssp HHHHHHHHTSSS-EEEEECSSHHHHHHHHHHHHHHHTCCHHHHEEEECTTCCCTTCCEEEECSCTTCTTCCS-SCCSSCS
T ss_pred HHHHHHHHcccc-ceeeehhhhhHHHHHHHHHHHhhchhhhhhhhhhhhhhccchhhhhccCCccccccccc-ccchhhh
Confidence 355666677666 899999999998877542 11 11233444556899999999864211000 0000011
Q ss_pred ccCCCCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 73 KHAKPGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 73 ~~l~~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
..+.++.+++|+.-....+. +.+...+.|..+++
T Consensus 108 ~~~~~~~~v~D~~y~p~~T~--l~~~a~~~G~~~i~ 141 (177)
T d1nvta1 108 EKLREDMVVMDLIYNPLETV--LLKEAKKVNAKTIN 141 (177)
T ss_dssp TTCCSSSEEEECCCSSSSCH--HHHHHHTTTCEEEC
T ss_pred hccCcccceeeecCCcHhHH--HHHHHHHCCCcccC
Confidence 23457788889754433332 23445677877775
|
| >d2d1ya1 c.2.1.2 (A:2-249) Hypothetical protein TTHA0369 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein TTHA0369 species: Thermus thermophilus [TaxId: 274]
Probab=92.69 E-value=0.096 Score=41.18 Aligned_cols=69 Identities=10% Similarity=0.088 Sum_probs=45.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|++++.+...+.+. ..+-+=+.++++++.++.. +.+...+=+++
T Consensus 17 IG~aia~~la~~G~~V~~~~~~~~~~~~~~~~~~-------------~~~~~Dv~~~~~v~~~~~~---~~~~~G~iDiL 80 (248)
T d2d1ya1 17 IGRAIAQAFAREGALVALCDLRPEGKEVAEAIGG-------------AFFQVDLEDERERVRFVEE---AAYALGRVDVL 80 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTHHHHHHHHTC-------------EEEECCTTCHHHHHHHHHH---HHHHHSCCCEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHcCC-------------eEEEEeCCCHHHHHHHHHH---HHHhcCCCCeE
Confidence 7999999999999999999999876544333232 1222234667777777654 44433344567
Q ss_pred EEcCC
Q psy764 82 IDSST 86 (286)
Q Consensus 82 id~st 86 (286)
|+...
T Consensus 81 VnnAG 85 (248)
T d2d1ya1 81 VNNAA 85 (248)
T ss_dssp EECCC
T ss_pred EEeCc
Confidence 76543
|
| >d1xkqa_ c.2.1.2 (A:) Hypothetical protein R05D8.7 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein R05D8.7 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.68 E-value=0.094 Score=41.80 Aligned_cols=77 Identities=8% Similarity=0.051 Sum_probs=47.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEE--ecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIIS--MLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~--~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|+++|++|.+.+|++++.+++.+.= .... ....++..+ =+.++++++.++.. +.+...+=+
T Consensus 17 IG~aia~~la~~Ga~V~l~~r~~~~l~~~~~~l-~~~~-----~~~~~~~~~~~Dvs~~~~v~~~~~~---~~~~~g~iD 87 (272)
T d1xkqa_ 17 IGRTTAILFAQEGANVTITGRSSERLEETRQII-LKSG-----VSEKQVNSVVADVTTEDGQDQIINS---TLKQFGKID 87 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHH-HTTT-----CCGGGEEEEECCTTSHHHHHHHHHH---HHHHHSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-HhcC-----CCCCceEEEEccCCCHHHHHHHHHH---HHHHhCCce
Confidence 799999999999999999999998877665420 0000 011122222 24567777777664 443333446
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|+....
T Consensus 88 ilvnnAG~ 95 (272)
T d1xkqa_ 88 VLVNNAGA 95 (272)
T ss_dssp EEEECCCC
T ss_pred EEEeCCcc
Confidence 77776543
|
| >d1a5za1 c.2.1.5 (A:22-163) Lactate dehydrogenase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Thermotoga maritima [TaxId: 2336]
Probab=92.63 E-value=0.059 Score=38.50 Aligned_cols=56 Identities=16% Similarity=0.242 Sum_probs=38.9
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHc---------CCcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKE---------GANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|.++|..|+.++. ++..+|+++++++..... ......+..+.+++||+|+++...
T Consensus 11 VG~~~a~~l~~~~l~~el~L~Di~~~~~~g~~~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 77 (140)
T d1a5za1 11 VGSSTAFALLMKGFAREMVLIDVDKKRAEGDALDLIHGTPFTRRANIYAGDYADLKGSDVVIVAAGV 77 (140)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSCCCEEEECCGGGGTTCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCCCEEEEEecccccccchhccccccccccccccccCCcHHHhcCCCEEEEeccc
Confidence 68899988888775 899999998876433211 123333345567899999999743
|
| >d1nvmb1 c.2.1.3 (B:1-131,B:287-312) Acetaldehyde dehydrogenase (acylating) {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Acetaldehyde dehydrogenase (acylating) species: Pseudomonas sp. [TaxId: 306]
Probab=92.61 E-value=0.21 Score=36.20 Aligned_cols=80 Identities=20% Similarity=0.302 Sum_probs=48.3
Q ss_pred ccHH-HHHHHHhCCC-cEE-EEcCCchH--HHHHHHcCCcccCC-HHHHh-----hcCcEEEEecCChhHHHHHhcCCcc
Q psy764 2 ISTL-KLFFLQFQGH-DVI-VYDKNTDA--SQTLAKEGANMALS-LSTLA-----SGAEFIISMLPASQDVLDAYDGSDG 70 (286)
Q Consensus 2 ~G~~-lA~~L~~~G~-~V~-~~dr~~~~--~~~l~~~g~~~~~s-~~e~~-----~~adivi~~v~~~~~~~~v~~~~~~ 70 (286)
||+- +.+.|.+..+ ++. +.+|+++. .+...+.|+....+ .+++. .+.|+||+|+|....++.-.
T Consensus 15 ig~~~~~~~l~~~~~~el~avas~~~~~~~~~~a~~~~i~~~~~~~d~l~~~~~~~~iDiVf~ATpag~h~~~~~----- 89 (157)
T d1nvmb1 15 IGTDLMIKVLRNAKYLEMGAMVGIDAASDGLARAQRMGVTTTYAGVEGLIKLPEFADIDFVFDATSASAHVQNEA----- 89 (157)
T ss_dssp HHHHHHHHHHHHCSSEEEEEEECSCTTCHHHHHHHHTTCCEESSHHHHHHHSGGGGGEEEEEECSCHHHHHHHHH-----
T ss_pred HHHHHHHHHHhhCCcceEEEEEecchhccchhhhhhcCCcccccceeeeeecccccccCEEEEcCCchhHHHhHH-----
Confidence 4553 4444444433 544 45888653 23345567766554 44443 36899999999765555433
Q ss_pred ccccCCCCCEEEEcCC
Q psy764 71 ILKHAKPGVIVIDSST 86 (286)
Q Consensus 71 l~~~l~~g~ivid~st 86 (286)
....++.|..|||.|+
T Consensus 90 ~~~aa~~G~~VID~s~ 105 (157)
T d1nvmb1 90 LLRQAKPGIRLIDLTP 105 (157)
T ss_dssp HHHHHCTTCEEEECST
T ss_pred HHHHHHcCCEEEEccc
Confidence 2234578999999986
|
| >d1yxma1 c.2.1.2 (A:7-303) Peroxisomal trans 2-enoyl CoA reductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Peroxisomal trans 2-enoyl CoA reductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.52 E-value=0.044 Score=44.52 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=49.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc-CCcccCCHHHHhhcCcEEEEe--cCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE-GANMALSLSTLASGAEFIISM--LPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~-g~~~~~s~~e~~~~adivi~~--v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++|+.|+++|++|.+.+|++++.+...+. ...... ..+.+++.+. +.++++++.++.. +.+...+=
T Consensus 24 IG~aia~~la~~Ga~Vvi~~r~~~~l~~~~~el~~~~~~-----~~~~~~~~~~~Dvs~~~~v~~~~~~---~~~~~G~i 95 (297)
T d1yxma1 24 IGKAIVKELLELGSNVVIASRKLERLKSAADELQANLPP-----TKQARVIPIQCNIRNEEEVNNLVKS---TLDTFGKI 95 (297)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTSCT-----TCCCCEEEEECCTTCHHHHHHHHHH---HHHHHSCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhhhcc-----ccCceEEEEeccCCCHHHHHHHHHH---HHHHhCCe
Confidence 79999999999999999999999887665432 000000 1123444433 3567777777654 43334444
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
.++|+....
T Consensus 96 DiLVnnAg~ 104 (297)
T d1yxma1 96 NFLVNNGGG 104 (297)
T ss_dssp CEEEECCCC
T ss_pred EEEEeeccc
Confidence 677776543
|
| >d1y6ja1 c.2.1.5 (A:7-148) Lactate dehydrogenase {Clostridium thermocellum [TaxId: 1515]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Clostridium thermocellum [TaxId: 1515]
Probab=92.49 E-value=0.11 Score=37.12 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=35.1
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHH-c--C------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAK-E--G------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~-~--g------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|.++|..|+.+|. ++.++|+++++++.... . . ........+.+++||+|+++-..
T Consensus 12 VG~~~a~~l~~~~l~~el~L~D~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~~~~adivvitag~ 78 (142)
T d1y6ja1 12 VGASAAFTMALRQTANELVLIDVFKEKAIGEAMDINHGLPFMGQMSLYAGDYSDVKDCDVIVVTAGA 78 (142)
T ss_dssp HHHHHHHHHHHTTCSSEEEEECCC---CCHHHHHHTTSCCCTTCEEEC--CGGGGTTCSEEEECCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEeccCCccceeeeeeccCcccCCCeeEeeCcHHHhCCCceEEEeccc
Confidence 68999999998886 89999999876432221 1 1 11222234556899999998543
|
| >d1xhla_ c.2.1.2 (A:) Hypothetical protein F25D1.5 {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein F25D1.5 species: Caenorhabditis elegans [TaxId: 6239]
Probab=92.48 E-value=0.1 Score=41.60 Aligned_cols=74 Identities=12% Similarity=0.167 Sum_probs=46.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||.++|+.|++.|++|.+.+|++++.+++.+. |... .++..+..=+.++++++.++.. +.+...+
T Consensus 16 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~i~~~~~~~--------~~~~~~~~Dv~~~~~v~~~~~~---~~~~~G~ 84 (274)
T d1xhla_ 16 IGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPA--------EKINAVVADVTEASGQDDIINT---TLAKFGK 84 (274)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCCG--------GGEEEEECCTTSHHHHHHHHHH---HHHHHSC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCCCC--------cceEEEEeeCCCHHHHHHHHHH---HHHHcCC
Confidence 79999999999999999999999887766432 2110 1122222334667777777654 3333333
Q ss_pred CCEEEEcCC
Q psy764 78 GVIVIDSST 86 (286)
Q Consensus 78 g~ivid~st 86 (286)
=+++|+...
T Consensus 85 iDilVnnAG 93 (274)
T d1xhla_ 85 IDILVNNAG 93 (274)
T ss_dssp CCEEEECCC
T ss_pred ceEEEeecc
Confidence 356666543
|
| >d1edza1 c.2.1.7 (A:149-319) Methylenetetrahydrofolate dehydrogenase/cyclohydrolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Aminoacid dehydrogenase-like, C-terminal domain domain: Methylenetetrahydrofolate dehydrogenase/cyclohydrolase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.40 E-value=0.042 Score=40.74 Aligned_cols=76 Identities=16% Similarity=0.166 Sum_probs=48.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HHHHHHcCCc------------ccCCHHHHhhcCcEEEEecCChhHHHHHhcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQTLAKEGAN------------MALSLSTLASGAEFIISMLPASQDVLDAYDGS 68 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~g~~------------~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~ 68 (286)
+|.++|.-|.+.|..|+..+.+... ..+ ..... ..+.+++....+|++|++++.+.- .+.
T Consensus 41 VG~Pla~lL~~~gaTVt~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~lk~~~~~aDIvIsavG~p~~---~i~-- 113 (171)
T d1edza1 41 VGRPLAALLANDGATVYSVDVNNIQKFTR--GESLKLNKHHVEDLGEYSEDLLKKCSLDSDVVITGVPSENY---KFP-- 113 (171)
T ss_dssp THHHHHHHHHTTSCEEEEECSSEEEEEES--CCCSSCCCCEEEEEEECCHHHHHHHHHHCSEEEECCCCTTC---CBC--
T ss_pred cHHHHHHHHHHCCCEEEEecccccccccc--ccceeeeeeccccccccchhHHhhccccCCEEEEccCCCcc---ccC--
Confidence 7888888888888888887754211 000 00001 012267777899999999997631 011
Q ss_pred ccccccCCCCCEEEEcCCC
Q psy764 69 DGILKHAKPGVIVIDSSTV 87 (286)
Q Consensus 69 ~~l~~~l~~g~ivid~st~ 87 (286)
.+.+++|.++||.+..
T Consensus 114 ---~d~ik~GavvIDvGi~ 129 (171)
T d1edza1 114 ---TEYIKEGAVCINFACT 129 (171)
T ss_dssp ---TTTSCTTEEEEECSSS
T ss_pred ---hhhcccCceEeecccc
Confidence 2356889999998754
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.30 E-value=0.11 Score=37.91 Aligned_cols=65 Identities=12% Similarity=0.230 Sum_probs=45.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc---CCHH---HHhhcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA---LSLS---TLASGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~---~s~~---e~~~~adivi~~v~~~~~~~~v~~ 66 (286)
+|...+.-+...|.++++.++++++.+.+.+.|+..+ .+.. ...+..|++|-|+..+..+...+.
T Consensus 42 vG~~a~qlak~~Ga~~i~~~~~~~~~~~a~~lGad~~i~~~~~~~~~~~~~~~D~vid~~g~~~~~~~~~~ 112 (168)
T d1uufa2 42 LGHMGIKLAHAMGAHVVAFTTSEAKREAAKALGADEVVNSRNADEMAAHLKSFDFILNTVAAPHNLDDFTT 112 (168)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHHTCSEEEETTCHHHHHTTTTCEEEEEECCSSCCCHHHHHT
T ss_pred HHHHHHHHhhcccccchhhccchhHHHHHhccCCcEEEECchhhHHHHhcCCCceeeeeeecchhHHHHHH
Confidence 4666666666789999999999999888788786432 1122 123468899999987666666554
|
| >d1hyha1 c.2.1.5 (A:21-166) L-2-hydroxyisocapronate dehydrogenase, L-HICDH {Lactobacillus confusus [TaxId: 1583]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: L-2-hydroxyisocapronate dehydrogenase, L-HICDH species: Lactobacillus confusus [TaxId: 1583]
Probab=92.29 E-value=0.081 Score=38.05 Aligned_cols=57 Identities=19% Similarity=0.155 Sum_probs=38.6
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHH----c----C--CcccCCHHHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAK----E----G--ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~----~----g--~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
||+++|..|+.+|. ++..+|+++++++.... . + .....+-.+.+++||+||++...+
T Consensus 12 VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~~~Dl~~a~~~~~~~~~~~~~d~~~l~~adiVVitaG~~ 80 (146)
T d1hyha1 12 VGAAVAHGLIAQGVADDYVFIDANEAKVKADQIDFQDAMANLEAHGNIVINDWAALADADVVISTLGNI 80 (146)
T ss_dssp HHHHHHHHHHHHTCCSEEEEECSSHHHHHHHHHHHHHHGGGSSSCCEEEESCGGGGTTCSEEEECCSCG
T ss_pred HHHHHHHHHHhcCCCceEEEEecccchhhhHHHhhhccccccCCccceeccCHHHhccccEEEEecccc
Confidence 68899999988874 89999999887543221 1 1 122222334578999999987643
|
| >d2nvwa1 c.2.1.3 (A:2-154,A:374-457) Galactose/lactose metabolism regulatory protein GAL80 {Yeast (Kluyveromyces lactis) [TaxId: 28985]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Galactose/lactose metabolism regulatory protein GAL80 species: Yeast (Kluyveromyces lactis) [TaxId: 28985]
Probab=92.26 E-value=0.37 Score=37.29 Aligned_cols=88 Identities=10% Similarity=0.155 Sum_probs=54.7
Q ss_pred CCcEE-EEcCCchHHHHHHHc-C---CcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCC-ccccccCCCCCEEEEcC
Q psy764 14 GHDVI-VYDKNTDASQTLAKE-G---ANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGS-DGILKHAKPGVIVIDSS 85 (286)
Q Consensus 14 G~~V~-~~dr~~~~~~~l~~~-g---~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~-~~l~~~l~~g~ivid~s 85 (286)
+++|. ++|+++++.+.+.+. + ....++.+++++ +-|+|++|+|+....+.+.... .|+ .......++++-=
T Consensus 45 ~~~ivav~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~iD~V~i~tp~~~h~~~~~~al~aG~-~~~~~k~V~~EKP 123 (237)
T d2nvwa1 45 QFQIVALYNPTLKSSLQTIEQLQLKHATGFDSLESFAQYKDIDMIVVSVKVPEHYEVVKNILEHSS-QNLNLRYLYVEWA 123 (237)
T ss_dssp TEEEEEEECSCHHHHHHHHHHTTCTTCEEESCHHHHHHCTTCSEEEECSCHHHHHHHHHHHHHHSS-SCSSCCEEEEESS
T ss_pred CeEEEEEEcCCHHHHHHHHHhcccccceeecchhhcccccccceeeccCCCcchhhHHHHHHHhcc-cccCCceEEEecc
Confidence 45755 789999998887654 4 345689999986 5779999999776655554320 011 0012234677642
Q ss_pred -CCCchHHHHHHHHHHhc
Q psy764 86 -TVDPQVPQTLSNLAREK 102 (286)
Q Consensus 86 -t~~p~~~~~~~~~~~~~ 102 (286)
+.+..+.+++.+...++
T Consensus 124 la~~~~e~~~l~~~a~~~ 141 (237)
T d2nvwa1 124 LAASVQQAEELYSISQQR 141 (237)
T ss_dssp SSSSHHHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHhhc
Confidence 34556667776665544
|
| >d1spxa_ c.2.1.2 (A:) Glucose dehydrogenase (5l265) {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase (5l265) species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.25 E-value=0.079 Score=42.06 Aligned_cols=75 Identities=8% Similarity=0.146 Sum_probs=48.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc----CCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE----GANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKP 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~----g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~ 77 (286)
||.++|+.|+++|++|.+.+|++++.+++.+. |.. . .++..+..=+.++++++.++.. +.+...+
T Consensus 17 IG~aia~~la~~Ga~V~~~~r~~~~l~~~~~~l~~~~~~----~----~~~~~~~~Dvt~~~~v~~~~~~---~~~~~g~ 85 (264)
T d1spxa_ 17 IGRATAVLFAREGAKVTITGRHAERLEETRQQILAAGVS----E----QNVNSVVADVTTDAGQDEILST---TLGKFGK 85 (264)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHTTCC----G----GGEEEEECCTTSHHHHHHHHHH---HHHHHSC
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCC----c----CceEEEEccCCCHHHHHHHHHH---HHHHhCC
Confidence 79999999999999999999999887766432 111 0 0112222235667777777764 4444444
Q ss_pred CCEEEEcCCC
Q psy764 78 GVIVIDSSTV 87 (286)
Q Consensus 78 g~ivid~st~ 87 (286)
=+++|+...+
T Consensus 86 iDilvnnAG~ 95 (264)
T d1spxa_ 86 LDILVNNAGA 95 (264)
T ss_dssp CCEEEECCC-
T ss_pred CCEeeccccc
Confidence 5678877554
|
| >d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Mannitol dehydrogenase species: Mushroom (Agaricus bisporus) [TaxId: 5341]
Probab=92.07 E-value=0.067 Score=42.36 Aligned_cols=75 Identities=13% Similarity=0.066 Sum_probs=46.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEe--cCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISM--LPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~--v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|+++|++|.+.+|+.++.++..+. ..+.. ..++..+. +.++++++.++.. +.+...+=+
T Consensus 21 IG~aia~~la~~Ga~V~i~~r~~~~~~~~~~~-------~~~~~-g~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iD 89 (260)
T d1h5qa_ 21 IGLAFTRAVAAAGANVAVIYRSAADAVEVTEK-------VGKEF-GVKTKAYQCDVSNTDIVTKTIQQ---IDADLGPIS 89 (260)
T ss_dssp HHHHHHHHHHHTTEEEEEEESSCTTHHHHHHH-------HHHHH-TCCEEEEECCTTCHHHHHHHHHH---HHHHSCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHHH-------HHHHh-CCceEEEEccCCCHHHHHHHHHH---HHHHhCCCc
Confidence 79999999999999999999998876655331 10000 12232222 4667777777654 443333335
Q ss_pred EEEEcCCC
Q psy764 80 IVIDSSTV 87 (286)
Q Consensus 80 ivid~st~ 87 (286)
++|+...+
T Consensus 90 ilVnnAg~ 97 (260)
T d1h5qa_ 90 GLIANAGV 97 (260)
T ss_dssp EEEECCCC
T ss_pred Eecccccc
Confidence 67776543
|
| >d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD species: Escherichia coli [TaxId: 562]
Probab=91.87 E-value=0.032 Score=36.82 Aligned_cols=24 Identities=17% Similarity=0.080 Sum_probs=20.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD 25 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~ 25 (286)
.|.+.|+.|.+.|++|++||.+..
T Consensus 16 sG~s~a~~L~~~g~~v~~~D~~~~ 39 (93)
T d2jfga1 16 TGLSCVDFFLARGVTPRVMDTRMT 39 (93)
T ss_dssp HHHHHHHHHHHTTCCCEEEESSSS
T ss_pred HHHHHHHHHHHCCCEEEEeeCCcC
Confidence 378899999999999999987543
|
| >d1zmta1 c.2.1.2 (A:2-253) Halohydrin dehalogenase HheC {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Halohydrin dehalogenase HheC species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.81 E-value=0.076 Score=41.83 Aligned_cols=31 Identities=19% Similarity=0.121 Sum_probs=27.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
||.++|+.|++.|++|.+.+|+.++.+++.+
T Consensus 12 iG~aiA~~la~~Ga~V~i~~r~~~~~~~~~~ 42 (252)
T d1zmta1 12 GGMGSALRLSEAGHTVACHDESFKQKDELEA 42 (252)
T ss_dssp THHHHHHHHHHTTCEEEECCGGGGSHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHh
Confidence 7999999999999999999999888777654
|
| >d1edoa_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Oil seed rape (Brassica napus) [TaxId: 3708]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Oil seed rape (Brassica napus) [TaxId: 3708]
Probab=91.71 E-value=0.18 Score=39.36 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=45.7
Q ss_pred ccHHHHHHHHhCCCcEEEE-cCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVY-DKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~-dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|+++|++|.+. .|+++..+.+.+. ..+.-.++..+-.=+.++++++.++.. +.+...+=++
T Consensus 13 IG~a~a~~la~~Ga~V~i~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~Dv~~~~~v~~~~~~---~~~~~g~iDi 82 (244)
T d1edoa_ 13 IGKAIALSLGKAGCKVLVNYARSAKAAEEVSKQ-------IEAYGGQAITFGGDVSKEADVEAMMKT---AIDAWGTIDV 82 (244)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHHHTCEEEEEECCTTSHHHHHHHHHH---HHHHSSCCSE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHH-------HHHcCCcEEEEeCCCCCHHHHHHHHHH---HHHHcCCCCc
Confidence 7999999999999999875 5677766655432 111101122222235666777777664 4444434467
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|+....
T Consensus 83 LVnnAg~ 89 (244)
T d1edoa_ 83 VVNNAGI 89 (244)
T ss_dssp EEECCCC
T ss_pred ccccccc
Confidence 7776543
|
| >d1ojua1 c.2.1.5 (A:22-163) Malate dehydrogenase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=91.68 E-value=0.22 Score=35.43 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=38.9
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHH----HHH----cC----CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQT----LAK----EG----ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~----~g----~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|.++|..|+.+|. ++.++|+++++++. +.. .. +....+. +.++++|+|+++...
T Consensus 11 VG~~~a~~l~~~~~~~elvL~Di~~~~~~g~alDl~~~~~~~~~~~~i~~~~d~-~~~~~adiVvitag~ 79 (142)
T d1ojua1 11 VGSTSAFTCLLNLDVDEIALVDIAEDLAVGEAMDLAHAAAGIDKYPKIVGGADY-SLLKGSEIIVVTAGL 79 (142)
T ss_dssp HHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHHHTTTCCCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred HHHHHHHHHHhcCcCceEEEEecccchhhHHHHHHhhhccccCCCCccccCCCH-HHhccccEEEEeccc
Confidence 68999999988875 79999999887543 221 11 2223444 677899999998753
|
| >d1ulua_ c.2.1.2 (A:) Enoyl-ACP reductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Thermus thermophilus [TaxId: 274]
Probab=91.66 E-value=0.17 Score=39.69 Aligned_cols=77 Identities=10% Similarity=0.080 Sum_probs=45.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|+++|++|.+.+|+++..+...+. .+....+..+-.=+.++++++.++.. +.+...+=+++
T Consensus 22 IG~aiA~~la~~Ga~V~i~~~~~~~~~~~~~~--------~~~~~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~iDil 90 (256)
T d1ulua_ 22 LGFAIAAKLKEAGAEVALSYQAERLRPEAEKL--------AEALGGALLFRADVTQDEELDALFAG---VKEAFGGLDYL 90 (256)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGHHHHHHH--------HHHTTCCEEEECCTTCHHHHHHHHHH---HHHHHSSEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHh--------hhccCcccccccccCCHHHHHHHHHH---HHHhcCCceEE
Confidence 78999999999999999999986544333211 11111222333335666777777653 33333333567
Q ss_pred EEcCCCCc
Q psy764 82 IDSSTVDP 89 (286)
Q Consensus 82 id~st~~p 89 (286)
|+.....+
T Consensus 91 Vnnag~~~ 98 (256)
T d1ulua_ 91 VHAIAFAP 98 (256)
T ss_dssp EECCCCCC
T ss_pred Eecccccc
Confidence 77665543
|
| >d2fy8a1 c.2.1.9 (A:116-244) Potassium channel-related protein MthK {Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Potassium channel NAD-binding domain domain: Potassium channel-related protein MthK species: Archaeon Methanothermobacter thermautotrophicus [TaxId: 145262]
Probab=91.54 E-value=0.21 Score=34.70 Aligned_cols=94 Identities=16% Similarity=0.192 Sum_probs=57.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-CC--HHHH-----hhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-LS--LSTL-----ASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~s--~~e~-----~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|..+++.| +|++|.+.+.++++.+.+...|..+. .+ -.+. +++++.++++.+++..-..+.. ...
T Consensus 11 ~g~~l~~~L--~~~~i~vi~~d~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~A~~vi~~~~~d~~n~~~~~----~~r 84 (129)
T d2fy8a1 11 STLECLREL--RGSEVFVLAEDENVRKKVLRSGANFVHGDPTRVSDLEKANVRGARAVIVNLESDSETIHCIL----GIR 84 (129)
T ss_dssp HHHHHHHTS--CGGGEEEEESCTTHHHHHHHTTCEEEESCTTSHHHHHHTTCTTCSEEEECCSSHHHHHHHHH----HHH
T ss_pred HHHHHHHHH--cCCCCEEEEcchHHHHHHHhcCccccccccCCHHHHHHhhhhcCcEEEEeccchhhhHHHHH----HHH
Confidence 467777777 46789999999999999888775432 12 1233 3579999999987654433333 223
Q ss_pred cCCCC-CEEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 74 HAKPG-VIVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 74 ~l~~g-~ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
.+.|. ++++-+. .+.....+ ...|+..+
T Consensus 85 ~~~~~~~iia~~~--~~~~~~~l----~~~G~d~v 113 (129)
T d2fy8a1 85 KIDESVRIIAEAE--RYENIEQL----RMAGADQV 113 (129)
T ss_dssp HHCSSSCEEEECS--SGGGHHHH----HHHHCSEE
T ss_pred HHCCCceEEEEEc--CHHHHHHH----HHCCCCEE
Confidence 34444 5665433 34444333 33455544
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.49 E-value=0.22 Score=36.08 Aligned_cols=36 Identities=14% Similarity=0.302 Sum_probs=30.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANM 37 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~ 37 (286)
||...+..+...|.+|++.++++++.+.+++.|+..
T Consensus 39 iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k~~Ga~~ 74 (168)
T d1rjwa2 39 LGHVAVQYAKAMGLNVVAVDIGDEKLELAKELGADL 74 (168)
T ss_dssp THHHHHHHHHHTTCEEEEECSCHHHHHHHHHTTCSE
T ss_pred chhhhhHHHhcCCCeEeccCCCHHHhhhhhhcCcce
Confidence 677777878888999999999999999888887543
|
| >d1obba1 c.2.1.5 (A:2-172) Alpha-glucosidase AglA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Alpha-glucosidase AglA species: Thermotoga maritima [TaxId: 2336]
Probab=91.22 E-value=0.36 Score=35.39 Aligned_cols=45 Identities=18% Similarity=0.335 Sum_probs=33.6
Q ss_pred CCcEEEEcCCchHHHHHHH--------cC----CcccCCHHHHhhcCcEEEEecCCh
Q psy764 14 GHDVIVYDKNTDASQTLAK--------EG----ANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 14 G~~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
+.++..+|+++++++.... .+ +..+.+..|++++||+|+.+...+
T Consensus 31 ~~eivL~Did~~~~~~~~~~~~~~~~~~~~~~~i~~~td~~eaL~dad~Vv~~~~~g 87 (171)
T d1obba1 31 GSTVTLMDIDEERLDAILTIAKKYVEEVGADLKFEKTMNLDDVIIDADFVINTAMVG 87 (171)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHHHHHHTTCCCEEEEESCHHHHHTTCSEEEECCCTT
T ss_pred CCEEEEEeCCchHHHHHHHHHHHHHHhcCCCeEEEEeCChhhcccCCCeEeeecccc
Confidence 4589999999988654321 11 345678999999999999987643
|
| >d1pgja1 a.100.1.1 (A:179-478) 6-phosphogluconate dehydrogenase (6PGD) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Trypanosoma brucei [TaxId: 5691]
Probab=91.21 E-value=0.4 Score=38.59 Aligned_cols=151 Identities=7% Similarity=0.018 Sum_probs=87.6
Q ss_pred ecCCHhhHHHHHHHHHHhcCCe--EecCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCCCHHHHHHHHHc
Q psy764 127 VGGDKSSLEKAKPILKCMGRNI--VHCGDSGNGQVAKLCNNMLLGVTMMGVAEAMNLGVK------LGMNAKLLSDVINT 198 (286)
Q Consensus 127 ~gg~~~~~~~~~~ll~~~g~~v--~~~g~~g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~------~Gl~~~~~~~~~~~ 198 (286)
.|...+....+...+....... ...........+|.+.|.+.+..+.+++|++.+.++ .++|..++.++-+.
T Consensus 113 ~S~~k~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~Al~~~~i~syaQGf~LL~~as~~~~w~ldl~~Ia~iWr~ 192 (300)
T d1pgja1 113 FTMYKTERQANASNAPGITQSPGYTLKNKSPSGPEIKQLYDSVCIAIISCYAQMFQCLREMDKVHNFGLNLPATIATFRA 192 (300)
T ss_dssp HHHTHHHHHHHHHHSTTTTCCCCCCCSCCSTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHTTSS
T ss_pred HhCChHHHHHHHhhcccccCCcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCccchHHHHHhcC
Confidence 3445554455555554443322 223345788899999999999999999999999986 36888999888776
Q ss_pred cC-CCcccccccCCCCCccccCCCCCCCCCCcc--chhHHHHH-HHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCc
Q psy764 199 SS-GRCWSSEVYNPVPGVLSNVPASNNYNGGFK--ISLLAKDM-KLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKD 274 (286)
Q Consensus 199 ~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~f~--~~~~~kd~-~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d 274 (286)
+. -+|++++..... ....+...+....|. +....+.. +.+...+.+.|+|+|.+.++...|.... .+..
T Consensus 193 GCIIRS~LL~~i~~a---~~~~~~l~~l~~~f~~~~~~~~~~~~r~v~~~~~~~gip~P~lssaL~y~~~~~----~~~l 265 (300)
T d1pgja1 193 GCILQGYLLKPMTEA---FEKNPNISNLMCAFQTEIRAGLQNYRDMVALITSKLEVSIPVLSASLNYVTAMF----TPTL 265 (300)
T ss_dssp SSTTCBTTHHHHHHH---HHHCTTCSCTTGGGHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT----CSCC
T ss_pred CceeeHHHHHHHHHH---hhcCCccchhhHHHHHHHHHhhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHhh----ccCC
Confidence 63 455544322110 000000000011121 11112222 3344556788999999999999776542 2333
Q ss_pred hh-HHHHHHhh
Q psy764 275 FS-YIYEFLKN 284 (286)
Q Consensus 275 ~~-~~~~~~~~ 284 (286)
.+ .+++..|+
T Consensus 266 ~~anLIQAqRD 276 (300)
T d1pgja1 266 KYGQLVSLQRD 276 (300)
T ss_dssp THHHHHHHHHH
T ss_pred chhHHHHHHHh
Confidence 33 47776653
|
| >d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Neisseria meningitidis, serogroup B [TaxId: 487]
Probab=91.03 E-value=0.047 Score=37.39 Aligned_cols=88 Identities=10% Similarity=-0.025 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCc-ccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHh
Q psy764 168 LGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRC-WSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLAN 246 (286)
Q Consensus 168 ~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~ 246 (286)
++.++.++.++ +.+.|++.+...+++.....++ ........-|.. +.+..-+|++++.. .++..+
T Consensus 19 ~~~~~ea~~~~---~~~~Gl~~~~a~~lv~~~~~Gs~~ll~~s~~~~~~----L~~~V~SpgGtT~a-------gl~~l~ 84 (111)
T d1yqga1 19 VFYLLDALQNA---AIRQGFDMAEARALSLATFKGAVALAEQTGEDFEK----LQKNVTSKGGTTHE-------AVEAFR 84 (111)
T ss_dssp HHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHHCCCHHH----HHHHTCCTTSHHHH-------HHHHHH
T ss_pred HHHHHHHHHHH---HHhcCCCHHHHHHHHHHHHHHHHHHHHhCCCCHHH----HHhcccCcchhHHH-------HHHHHH
Confidence 66667777776 8999999999888877653222 221111111111 12334467777666 556678
Q ss_pred hcCCCchHHHHHHHHHHHHHHcC
Q psy764 247 RCTAQTDLSKLATSIYKRLMDKG 269 (286)
Q Consensus 247 ~~g~~~p~~~~~~~~~~~a~~~g 269 (286)
+.|+.--+.+++..-++++.+.+
T Consensus 85 ~~~~~~~i~~ai~aA~~Rs~el~ 107 (111)
T d1yqga1 85 RHRVAEAISEGVCACVRRSQEME 107 (111)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HCChHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888887644
|
| >d1t2da1 c.2.1.5 (A:1-150) Lactate dehydrogenase {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]
Probab=90.94 E-value=0.14 Score=36.90 Aligned_cols=56 Identities=14% Similarity=0.158 Sum_probs=38.2
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHc--------CC--cc-cCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKE--------GA--NM-ALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~--------g~--~~-~~s~~e~~~~adivi~~v~~ 57 (286)
+|+++|..|...+. ++.+||+++++.+..... +. .+ ..+..+.++++|+|+++-..
T Consensus 14 VG~~~a~~l~~~~l~el~L~Di~~~~~~g~a~Dl~~~~~~~~~~~~v~~~~~~~~~~~advvvitag~ 81 (150)
T d1t2da1 14 IGGVMATLIVQKNLGDVVLFDIVKNMPHGKALDTSHTNVMAYSNCKVSGSNTYDDLAGADVVIVTAGF 81 (150)
T ss_dssp HHHHHHHHHHHTTCCEEEEECSSSSHHHHHHHHHHTHHHHHTCCCCEEEECCGGGGTTCSEEEECCSC
T ss_pred HHHHHHHHHHhCCCCeEEEEeccCCcceeeecchhhhccccCCCcEEEecccccccCCCcEEEEeccc
Confidence 68999988877775 799999998775433211 21 22 12344666899999998764
|
| >d1guza1 c.2.1.5 (A:1-142) Malate dehydrogenase {Chlorobium vibrioforme [TaxId: 1098]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Chlorobium vibrioforme [TaxId: 1098]
Probab=90.93 E-value=0.12 Score=36.93 Aligned_cols=55 Identities=11% Similarity=0.113 Sum_probs=38.7
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHc----------CCccc-CCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKE----------GANMA-LSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~----------g~~~~-~s~~e~~~~adivi~~v~ 56 (286)
+|.+++..|+..|. ++.++|+++++.+..... ..++. .+..+.+++||+|+++..
T Consensus 11 VG~~la~~l~~~~l~~el~L~Di~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~dadvvvitag 78 (142)
T d1guza1 11 VGATTAFRLAEKQLARELVLLDVVEGIPQGKALDMYESGPVGLFDTKVTGSNDYADTANSDIVIITAG 78 (142)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSSSHHHHHHHHHHTTHHHHTCCCEEEEESCGGGGTTCSEEEECCS
T ss_pred HHHHHHHHHHhCCCCceEEEeccccccchhhhhhhhcccchhcccceEEecCCHHHhcCCeEEEEEEe
Confidence 68999999999884 899999998765432210 12222 334566789999999964
|
| >d1i0za1 c.2.1.5 (A:1-160) Lactate dehydrogenase {Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Human (Homo sapiens), heart isoform (H chain) [TaxId: 9606]
Probab=90.80 E-value=0.14 Score=37.28 Aligned_cols=56 Identities=5% Similarity=-0.020 Sum_probs=38.6
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHH----HHc----C--CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTL----AKE----G--ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l----~~~----g--~~~~~s~~e~~~~adivi~~v~~ 57 (286)
||+++|..|+..|. ++.++|+++++++.. ... + .......-+.+++||+|+++-..
T Consensus 31 VG~~~A~~l~~~~l~~ElvLiD~~~~~a~g~alDl~h~~~~~~~~~~~~~~d~~~~~~adiVVitAg~ 98 (160)
T d1i0za1 31 VGMACAISILGKSLADELALVDVLEDKLKGEMMDLQHGSLFLQTPKIVADKDYSVTANSKIVVVTAGV 98 (160)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHHHHTGGGCCCSEEEECSSGGGGTTCSEEEECCSC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeccchhHHHHHHHhccccccCCCeEEeccchhhcccccEEEEecCC
Confidence 79999999999997 899999998776332 221 1 11122234556899999987653
|
| >d2pgda1 a.100.1.1 (A:177-473) 6-phosphogluconate dehydrogenase (6PGD) {Sheep (Ovis orientalis aries) [TaxId: 9940]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: Hydroxyisobutyrate and 6-phosphogluconate dehydrogenase domain domain: 6-phosphogluconate dehydrogenase (6PGD) species: Sheep (Ovis orientalis aries) [TaxId: 9940]
Probab=90.63 E-value=0.45 Score=38.21 Aligned_cols=123 Identities=10% Similarity=0.009 Sum_probs=80.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------CCCHHHHHHHHHccC-CCcccccccCCCCCccccCCCCCC--C
Q psy764 155 GNGQVAKLCNNMLLGVTMMGVAEAMNLGVKL------GMNAKLLSDVINTSS-GRCWSSEVYNPVPGVLSNVPASNN--Y 225 (286)
Q Consensus 155 g~a~~~Kl~~n~~~~~~~~~~~Ea~~l~~~~------Gl~~~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~--~ 225 (286)
.....+|.+.|.+.+..+.+++|.+.+.+++ ++|..++.++-+.+. -+|+.++..... ....+...+ .
T Consensus 138 ~~~~~i~~l~~al~~~~i~syaQGf~ll~~as~~~~w~ldl~~ia~iW~~GcIIrS~LL~~i~~a---~~~~~~l~nl~~ 214 (297)
T d2pgda1 138 DKKSFLEDIRKALYASKIISYAQGFMLLRQAATEFGWTLNYGGIALMWRGGCIIRSVFLGKIKDA---FDRNPGLQNLLL 214 (297)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHTTSSSTTCBTHHHHHHHH---HHHCTTCSCGGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCcCccHHHHHHHHcCCCeeeHHHHHHHHHH---HHhCCCccchhh
Confidence 4567789999999999999999999998854 788999999888763 555655432211 000000000 1
Q ss_pred CCCc--cchhHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHcCCCCCchhHHHHHHhh
Q psy764 226 NGGF--KISLLAKDMKLAEDLANRCTAQTDLSKLATSIYKRLMDKGCQDKDFSYIYEFLKN 284 (286)
Q Consensus 226 ~~~f--~~~~~~kd~~~~~~~a~~~g~~~p~~~~~~~~~~~a~~~g~g~~d~~~~~~~~~~ 284 (286)
.+.| .+....++++.+...+-+.|+|.|.+.++...|..... . .-...+++..|+
T Consensus 215 ~~~~~~~l~~~~~~~r~~v~~ai~~gip~P~lssaL~y~~~~~~-~---~lp~~lIQAqRD 271 (297)
T d2pgda1 215 DDFFKSAVENCQDSWRRAISTGVQAGIPMPCFTTALSFYDGYRH-A---MLPANLIQAQRD 271 (297)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHC-S---SCTHHHHHHHHH
T ss_pred cHHHHHHHhhccHHHHHHHHHHHHcCCChHHHHHHHHHHHHhcc-C---CchhHHHHHHHH
Confidence 1112 23444566788999999999999999999987764432 2 223446666553
|
| >d1wmaa1 c.2.1.2 (A:2-276) Carbonyl reductase/20beta-hydroxysteroid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Carbonyl reductase/20beta-hydroxysteroid dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.40 E-value=0.13 Score=40.96 Aligned_cols=76 Identities=13% Similarity=0.073 Sum_probs=47.5
Q ss_pred ccHHHHHHHHhC-CCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQ-GHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|++. |+.|++.+|++++.+++.+. +.+.-.++.++.+=|.+.++++.+... +.+...+=++
T Consensus 15 IG~a~A~~la~~~g~~Vi~~~r~~~~~~~~~~~-------l~~~~~~~~~~~~Dvs~~~sv~~~~~~---~~~~~g~iDi 84 (275)
T d1wmaa1 15 IGLAIVRDLCRLFSGDVVLTARDVTRGQAAVQQ-------LQAEGLSPRFHQLDIDDLQSIRALRDF---LRKEYGGLDV 84 (275)
T ss_dssp HHHHHHHHHHHHSSSEEEEEESSHHHHHHHHHH-------HHHTTCCCEEEECCTTCHHHHHHHHHH---HHHHHSSEEE
T ss_pred HHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHH-------HHhcCCcEEEEEEecCCHHHHHHHHHH---HHHhcCCcEE
Confidence 799999999985 89999999999987765432 111111234444446777777776654 3332223356
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|+...+
T Consensus 85 LVnNAGi 91 (275)
T d1wmaa1 85 LVNNAGI 91 (275)
T ss_dssp EEECCCC
T ss_pred EEEcCCc
Confidence 6665443
|
| >d1geea_ c.2.1.2 (A:) Glucose dehydrogenase {Bacillus megaterium [TaxId: 1404]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Glucose dehydrogenase species: Bacillus megaterium [TaxId: 1404]
Probab=90.14 E-value=0.21 Score=39.42 Aligned_cols=76 Identities=11% Similarity=0.178 Sum_probs=43.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch-HHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD-ASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~-~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|+++|++|.+.+|+.+ +.+.+.+. +.+.-.++..+..=+.+++++++++.. +.+...+=++
T Consensus 19 IG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~-------~~~~g~~~~~~~~Dvt~~~~v~~~~~~---~~~~~G~iDi 88 (261)
T d1geea_ 19 LGKSMAIRFATEKAKVVVNYRSKEDEANSVLEE-------IKKVGGEAIAVKGDVTVESDVINLVQS---AIKEFGKLDV 88 (261)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHHTTCEEEEEECCTTSHHHHHHHHHH---HHHHHSCCCE
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH-------HHhcCCcEEEEEccCCCHHHHHHHHHH---HHHHhCCCCE
Confidence 799999999999999999999864 34433221 011000111222224566677776653 3333333456
Q ss_pred EEEcCCC
Q psy764 81 VIDSSTV 87 (286)
Q Consensus 81 vid~st~ 87 (286)
+|+...+
T Consensus 89 LVnnAG~ 95 (261)
T d1geea_ 89 MINNAGL 95 (261)
T ss_dssp EEECCCC
T ss_pred eecccee
Confidence 6765543
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=90.12 E-value=0.21 Score=36.37 Aligned_cols=77 Identities=10% Similarity=0.078 Sum_probs=49.5
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCccc-----CCHHHH-h-----hcCcEEEEecCChhHHHHHhcCCc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMA-----LSLSTL-A-----SGAEFIISMLPASQDVLDAYDGSD 69 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-----~s~~e~-~-----~~adivi~~v~~~~~~~~v~~~~~ 69 (286)
+|...+..+...|. +|+++++++++.+.+.+.|+... .++.+. . ...|++|-|+..+..++..+.
T Consensus 40 vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~~~Ga~~~i~~~~~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~--- 116 (170)
T d1jvba2 40 LGTMAVQIAKAVSGATIIGVDVREEAVEAAKRAGADYVINASMQDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPK--- 116 (170)
T ss_dssp HHHHHHHHHHHHTCCEEEEEESSHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGG---
T ss_pred ceeeeeecccccccccccccccchhhHHHHHHcCCceeeccCCcCHHHHHHHHhhcccchhhhcccccchHHHhhhh---
Confidence 45555666666674 89999999999998888886332 223222 2 247899999887655555443
Q ss_pred cccccCCCCCEEEEcC
Q psy764 70 GILKHAKPGVIVIDSS 85 (286)
Q Consensus 70 ~l~~~l~~g~ivid~s 85 (286)
.++++..++..+
T Consensus 117 ----~l~~~G~iv~~G 128 (170)
T d1jvba2 117 ----ALAKQGKYVMVG 128 (170)
T ss_dssp ----GEEEEEEEEECC
T ss_pred ----hcccCCEEEEec
Confidence 344555555554
|
| >d1llda1 c.2.1.5 (A:7-149) Lactate dehydrogenase {Bifidobacterium longum, strain am101-2 [TaxId: 216816]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Bifidobacterium longum, strain am101-2 [TaxId: 216816]
Probab=90.10 E-value=0.18 Score=36.02 Aligned_cols=55 Identities=7% Similarity=0.159 Sum_probs=39.1
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHH----HHHc----C---CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQT----LAKE----G---ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~~----g---~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|+++|..|+.+|. ++.++|+++++++. +... + +...++. +.+++||+|+++...
T Consensus 12 VG~~~a~~l~~~~l~~ElvL~D~~~~~~~g~a~Dl~~a~~~~~~~~i~~~~~~-~~~~daDvVVitaG~ 79 (143)
T d1llda1 12 VGSTLAFAAAQRGIAREIVLEDIAKERVEAEVLDMQHGSSFYPTVSIDGSDDP-EICRDADMVVITAGP 79 (143)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECSSHHHHHHHHHHHHHTGGGSTTCEEEEESCG-GGGTTCSEEEECCCC
T ss_pred HHHHHHHHHHhcCCCcEEEEEEeccccchhHHHHHHhccccCCCceeecCCCH-HHhhCCcEEEEeccc
Confidence 68999999998886 89999999987643 2221 1 1223344 457889999998754
|
| >d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Type II 3-hydroxyacyl-CoA dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.58 E-value=0.097 Score=40.92 Aligned_cols=31 Identities=19% Similarity=0.149 Sum_probs=27.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
||.++|+.|+++|++|.+.+|+.++.+.+.+
T Consensus 17 IG~aia~~la~~G~~V~~~~r~~~~~~~~~~ 47 (248)
T d2o23a1 17 LGLATAERLVGQGASAVLLDLPNSGGEAQAK 47 (248)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTTSSHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEeCChHHHHHHHH
Confidence 7999999999999999999999988776643
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=89.58 E-value=0.25 Score=35.74 Aligned_cols=64 Identities=14% Similarity=0.134 Sum_probs=42.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-----CCHHHHh----hcCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-----LSLSTLA----SGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-----~s~~e~~----~~adivi~~v~~~~~~~~v~ 65 (286)
+|...+..+...|.+|++.|+++++.+.+.+.|+..+ .+..+.+ .+.+.+|.+...+..++..+
T Consensus 39 vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~g~~~~i~~~~~~~~~~~~~ 111 (166)
T d1llua2 39 LGHVAVQYARAMGLHVAAIDIDDAKLELARKLGASLTVNARQEDPVEAIQRDIGGAHGVLVTAVSNSAFGQAI 111 (166)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHHTTCSEEEETTTSCHHHHHHHHHSSEEEEEECCSCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCccceecchhhHHHhhhccCccccccccchhHHHHHHHhhcCCcccccccccchHHHHHH
Confidence 5677777777789999999999999988888886422 1232222 23455566666555555544
|
| >d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=89.56 E-value=0.26 Score=38.96 Aligned_cols=75 Identities=20% Similarity=0.200 Sum_probs=42.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCC-chHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKN-TDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~-~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
||.++|+.|+++|++|.+.+|+ .+..+.+.+. ..+.-..+..+..=+.++++++..++. +.+...+=.+
T Consensus 30 IG~aia~~la~~Ga~Vvi~~~~~~~~~~~~~~~-------~~~~g~~~~~~~~D~~~~~~v~~~~~~---~~~~~g~idi 99 (272)
T d1g0oa_ 30 IGREMAMELGRRGCKVIVNYANSTESAEEVVAA-------IKKNGSDAACVKANVGVVEDIVRMFEE---AVKIFGKLDI 99 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHH-------HHHTTCCEEEEECCTTCHHHHHHHHHH---HHHHHSCCCE
T ss_pred HHHHHHHHHHHcCCEEEEEeCCchHHHHHHHHH-------HHhhCCceeeEeCCCCCHHHHHHHHHH---HHHHhCCCCc
Confidence 7999999999999999998776 4444444321 111111122222334566677776653 3333333456
Q ss_pred EEEcCC
Q psy764 81 VIDSST 86 (286)
Q Consensus 81 vid~st 86 (286)
+|+...
T Consensus 100 lV~nag 105 (272)
T d1g0oa_ 100 VCSNSG 105 (272)
T ss_dssp EEECCC
T ss_pred cccccc
Confidence 666543
|
| >d1e5da1 c.23.5.1 (A:251-402) Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain {Desulfovibrio gigas [TaxId: 879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Rubredoxin oxygen:oxidoreductase (ROO), C-terminal domain species: Desulfovibrio gigas [TaxId: 879]
Probab=89.34 E-value=2.2 Score=29.88 Aligned_cols=91 Identities=11% Similarity=-0.056 Sum_probs=54.7
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCCh-----hHHHHHhcCCccccccCCCC
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPAS-----QDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~-----~~~~~v~~~~~~l~~~l~~g 78 (286)
..++..|.+.|++|.++|.+....+. ....+.++|.||+..|+. ..++..+.. +...-.++
T Consensus 21 ~~Ia~~l~~~g~ev~~~~~~~~~~~~-----------~~~~l~~~d~vi~Gspt~~~~~~~~~~~~l~~---~~~~~~~~ 86 (152)
T d1e5da1 21 RVLAESFRDEGCTVKLMWCKACHHSQ-----------IMSEISDAGAVIVGSPTHNNGILPYVAGTLQY---IKGLRPQN 86 (152)
T ss_dssp HHHHHHHHHTTCEEEEEETTTSCHHH-----------HHHHHHTCSEEEEECCCBTTBCCHHHHHHHHH---HHHTCCCS
T ss_pred HHHHHHHhhCCCEEEEeecccCChhh-----------hccchhhCCEEEEeccccCCccCchhHHHHHH---hhccCCCC
Confidence 45666777778888877765322211 122356899999999963 345666542 22112345
Q ss_pred CEEEEcC--CCCchHHHHHHHHHHhcCCceEe
Q psy764 79 VIVIDSS--TVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 79 ~ivid~s--t~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
+.+.-.+ .........+.+.+.+.|...+.
T Consensus 87 k~~~~fgs~g~~~~a~~~~~~~l~~~g~~~v~ 118 (152)
T d1e5da1 87 KIGGAFGSFGWSGESTKVLAEWLTGMGFDMPA 118 (152)
T ss_dssp CEEEEEEEESSSCHHHHHHHHHHHHTTCBCCS
T ss_pred CEEEEEEeeCCCCccHHHHHHHHHHCCCEEec
Confidence 5543333 23455677888889998887664
|
| >d1xu9a_ c.2.1.2 (A:) 11-beta-hydroxysteroid dehydrogenase 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 11-beta-hydroxysteroid dehydrogenase 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.28 E-value=0.12 Score=40.97 Aligned_cols=31 Identities=19% Similarity=0.291 Sum_probs=28.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
||.++|+.|+++|++|.+.+|+.++.+++.+
T Consensus 26 IG~aiA~~la~~G~~Vil~~r~~~~l~~~~~ 56 (269)
T d1xu9a_ 26 IGREMAYHLAKMGAHVVVTARSKETLQKVVS 56 (269)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 7999999999999999999999998877654
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=89.08 E-value=0.33 Score=38.10 Aligned_cols=98 Identities=9% Similarity=0.007 Sum_probs=64.7
Q ss_pred HHHHHHhCCCcEEEEcCCchHHHHHHH----cCCc---ccCCHHHHh--hcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 6 KLFFLQFQGHDVIVYDKNTDASQTLAK----EGAN---MALSLSTLA--SGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 6 lA~~L~~~G~~V~~~dr~~~~~~~l~~----~g~~---~~~s~~e~~--~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
++..+++.|.+|++.|.+++.++..++ .|+. ...+..+.. ...|+|+.... ......++.. +...++
T Consensus 134 l~i~aa~~g~~V~gvDis~~av~~A~~na~~n~~~~~~~~~d~~~~~~~~~fD~V~ani~-~~~l~~l~~~---~~~~Lk 209 (254)
T d2nxca1 134 LAIAAEKLGGKALGVDIDPMVLPQAEANAKRNGVRPRFLEGSLEAALPFGPFDLLVANLY-AELHAALAPR---YREALV 209 (254)
T ss_dssp HHHHHHHTTCEEEEEESCGGGHHHHHHHHHHTTCCCEEEESCHHHHGGGCCEEEEEEECC-HHHHHHHHHH---HHHHEE
T ss_pred HHHHHHhcCCEEEEEECChHHHHHHHHHHHHcCCceeEEeccccccccccccchhhhccc-cccHHHHHHH---HHHhcC
Confidence 556678889999999999998766543 2432 234555544 35788887655 3455666543 556677
Q ss_pred CCCEEEEcCCCCchHHHHHHHHHHhcCCceEe
Q psy764 77 PGVIVIDSSTVDPQVPQTLSNLAREKQITFLD 108 (286)
Q Consensus 77 ~g~ivid~st~~p~~~~~~~~~~~~~g~~~~~ 108 (286)
||..++- |.+.......+.+.+.+.|...+.
T Consensus 210 pGG~lil-Sgil~~~~~~v~~~~~~~Gf~~~~ 240 (254)
T d2nxca1 210 PGGRALL-TGILKDRAPLVREAMAGAGFRPLE 240 (254)
T ss_dssp EEEEEEE-EEEEGGGHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEE-EecchhhHHHHHHHHHHCCCEEEE
Confidence 7765553 445556677788888888877665
|
| >d2ew8a1 c.2.1.2 (A:3-249) (s)-1-phenylethanol dehydrogenase {Azoarcus sp. ebn1 [TaxId: 76114]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (s)-1-phenylethanol dehydrogenase species: Azoarcus sp. ebn1 [TaxId: 76114]
Probab=89.08 E-value=0.29 Score=38.15 Aligned_cols=73 Identities=11% Similarity=0.078 Sum_probs=44.7
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HHHH-HHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQTL-AKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l-~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
||.++|+.|+++|++|.+.||++++ .+.. .+.|. ++-.+..=+.++++++.++.. +.+...+=+
T Consensus 17 IG~aia~~la~~Ga~V~~~~~~~~~~~~~~~~~~g~-----------~~~~~~~Dvs~~~~v~~~~~~---~~~~~G~iD 82 (247)
T d2ew8a1 17 IGRAIAERFAVEGADIAIADLVPAPEAEAAIRNLGR-----------RVLTVKCDVSQPGDVEAFGKQ---VISTFGRCD 82 (247)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCCHHHHHHHHHTTC-----------CEEEEECCTTCHHHHHHHHHH---HHHHHSCCC
T ss_pred HHHHHHHHHHHCCCEEEEEECCchHHHHHHHHHcCC-----------cEEEEEeeCCCHHHHHHHHHH---HHHHcCCCC
Confidence 7999999999999999999998653 2222 22221 111222224677777777664 444333446
Q ss_pred EEEEcCCCC
Q psy764 80 IVIDSSTVD 88 (286)
Q Consensus 80 ivid~st~~ 88 (286)
++|+...+.
T Consensus 83 ilVnnAG~~ 91 (247)
T d2ew8a1 83 ILVNNAGIY 91 (247)
T ss_dssp EEEECCCCC
T ss_pred EEEECCCCC
Confidence 777765543
|
| >d2ldxa1 c.2.1.5 (A:1-159) Lactate dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Lactate dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.88 E-value=0.19 Score=36.63 Aligned_cols=55 Identities=13% Similarity=0.222 Sum_probs=38.6
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHH----HHHc----C---CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQT----LAKE----G---ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~----l~~~----g---~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|+++|..|...|. ++.++|+++++++. +... + .....+. +.+++||+|+++-..
T Consensus 30 VG~~~A~~l~~~~l~~elvL~D~~~~~a~g~alDl~~~~~~~~~~~~~~~~d~-~~~~~adivvitag~ 97 (159)
T d2ldxa1 30 VGMACAISILLKGLADELALVDADTDKLRGEALDLQHGSLFLSTPKIVFGKDY-NVSANSKLVIITAGA 97 (159)
T ss_dssp HHHHHHHHHHTTTSCSEEEEECSCHHHHHHHHHHHHHTTTTCSCCEEEEESSG-GGGTTEEEEEECCSC
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCCchhhhccHHHHhCcchhcCCCeEEeccch-hhhccccEEEEeccc
Confidence 79999999999986 89999999877542 3221 1 1222344 445899999988754
|
| >d1ycga1 c.23.5.1 (A:251-399) Nitric oxide reductase C-terminal domain {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Nitric oxide reductase C-terminal domain species: Moorella thermoacetica [TaxId: 1525]
Probab=88.76 E-value=0.96 Score=31.79 Aligned_cols=117 Identities=10% Similarity=0.051 Sum_probs=64.5
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCCh-----hHHHHHhcCCccccccCCCC
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPAS-----QDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~-----~~~~~v~~~~~~l~~~l~~g 78 (286)
..++..+.+.|++|.++|.+....+. +.+-+.++|.||+..|+. ..++..+.. +...-.++
T Consensus 21 ~~Ia~~l~~~g~~v~~~~~~~~~~~~-----------~~~~~~~~d~ii~Gspt~~g~~~~~~~~~l~~---l~~~~~~~ 86 (149)
T d1ycga1 21 HALMDGLVAGGCEVKLFKLSVSDRND-----------VIKEILDARAVLVGSPTINNDILPVVSPLLDD---LVGLRPKN 86 (149)
T ss_dssp HHHHHHHHHTTCEEEEEEGGGSCHHH-----------HHHHHHHCSEEEEECCCBTTBCCGGGHHHHHH---HHHHCCSS
T ss_pred HHHHHHHHhcCCeeEEEEccccchHH-----------HhhhhhhCCeEEEEeecccCCCCHHHHHHHHH---HhccccCC
Confidence 45666666777777777654322221 122245799999999954 235555542 32222345
Q ss_pred CEEEEc--CCCCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhc
Q psy764 79 VIVIDS--STVDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMG 145 (286)
Q Consensus 79 ~ivid~--st~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g 145 (286)
+.+.-. .+......+.+.+.+...|...+..|.. .+--.-+++.+++++++-+.+.
T Consensus 87 k~~~~fgs~g~~g~a~~~l~~~l~~~g~~~v~~~~~-----------~~~~~P~~~dl~~~~e~g~~ia 144 (149)
T d1ycga1 87 KVGLAFGAYGWGGGAQKILEERLKAAKIELIAEPGP-----------TVQWVPRGEDLQRCYELGRKIA 144 (149)
T ss_dssp CEEEEEEEESSSCCHHHHHHHHHHHTTCEESCSSCC-----------EEESSCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEecccCCchhHHHHHHHHHHCCCEEeccceE-----------EEcccCCHHHHHHHHHHHHHHH
Confidence 543332 2334566778888898888877643311 1111124556667766665554
|
| >d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dehydrogenase/reductase SDR family member 6, DHRS6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.73 E-value=0.077 Score=41.67 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=27.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAK 32 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~ 32 (286)
||.++|+.|+++|++|.+.+|++++.+++.+
T Consensus 18 IG~aia~~la~~G~~Vi~~~r~~~~l~~~~~ 48 (245)
T d2ag5a1 18 IGQAAALAFAREGAKVIATDINESKLQELEK 48 (245)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHGGGGG
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHHHh
Confidence 7999999999999999999999988766544
|
| >d1u8xx1 c.2.1.5 (X:3-169) Maltose-6'-phosphate glucosidase GlvA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Maltose-6'-phosphate glucosidase GlvA species: Bacillus subtilis [TaxId: 1423]
Probab=88.65 E-value=0.5 Score=34.47 Aligned_cols=42 Identities=10% Similarity=0.287 Sum_probs=32.1
Q ss_pred cEEEEcCCchHHHHHHH--------cC----CcccCCHHHHhhcCcEEEEecCC
Q psy764 16 DVIVYDKNTDASQTLAK--------EG----ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 16 ~V~~~dr~~~~~~~l~~--------~g----~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|..+|.++++++.... .+ .....+..|++++||+||++...
T Consensus 34 eivL~Did~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~eal~~AD~Vvitag~ 87 (167)
T d1u8xx1 34 KLKLYDNDKERQDRIAGACDVFIREKAPDIEFAATTDPEEAFTDVDFVMAHIRV 87 (167)
T ss_dssp EEEEECSCHHHHHHHHHHHHHHHHHHCTTSEEEEESCHHHHHSSCSEEEECCCT
T ss_pred EEEEEcCChhHHHHHHHHHHHHHHHhCCCcceEecCChhhccCCCCEEEECCCc
Confidence 89999999998753221 12 34567899999999999999864
|
| >d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=88.46 E-value=1.2 Score=32.44 Aligned_cols=64 Identities=16% Similarity=0.234 Sum_probs=44.5
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCcccC------C-HHHHh-----hcCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMAL------S-LSTLA-----SGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~------s-~~e~~-----~~adivi~~v~~~~~~~~v~ 65 (286)
+|...+.-+...|. +|++.|++++|.+...+.|+..+- + ..+.. .+.|++|.|+..+...+..+
T Consensus 41 vGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~GA~~~in~~~~~~~~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~ 117 (176)
T d1d1ta2 41 VGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDAL 117 (176)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHHTSCCCEEEECSCCHHHHHHHH
T ss_pred hhHHHHHHHHHcCCceEEEecCcHHHHHHHHhcCCcEEECccccchHHHHHHHHhccccceEEEEeCCchHHHHHHH
Confidence 46666677777884 799999999999988888875431 1 12221 35888888888765555544
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=88.39 E-value=0.39 Score=35.12 Aligned_cols=65 Identities=14% Similarity=0.149 Sum_probs=42.0
Q ss_pred ccHHHHHHHHhCCCc-EEEEcCCchHHHHHHHcCCccc-----CCHHHHhh-----cCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGHD-VIVYDKNTDASQTLAKEGANMA-----LSLSTLAS-----GAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~-V~~~dr~~~~~~~l~~~g~~~~-----~s~~e~~~-----~adivi~~v~~~~~~~~v~~ 66 (286)
||...+..+...|.+ |.+.|++++|.+.+++.|+... +++.+.++ ..|+||-|+..+..++..+.
T Consensus 40 iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~ 115 (174)
T d1f8fa2 40 VGLSALLAAKVCGASIIIAVDIVESRLELAKQLGATHVINSKTQDPVAAIKEITDGGVNFALESTGSPEILKQGVD 115 (174)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHTCSEEEETTTSCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHH
T ss_pred HHhhhhhcccccccceeeeeccHHHHHHHHHHcCCeEEEeCCCcCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHh
Confidence 466666666666764 5677999999988888886322 23444332 26888888877655555443
|
| >d1x1ta1 c.2.1.2 (A:1-260) D(-)-3-hydroxybutyrate dehydrogenase {Pseudomonas fragi [TaxId: 296]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: D(-)-3-hydroxybutyrate dehydrogenase species: Pseudomonas fragi [TaxId: 296]
Probab=88.28 E-value=0.29 Score=38.46 Aligned_cols=75 Identities=15% Similarity=0.179 Sum_probs=45.3
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCc-hHHHHHHHcCCcccCCHHHHhhcCcEEEEe--cCChhHHHHHhcCCccccccCCCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNT-DASQTLAKEGANMALSLSTLASGAEFIISM--LPASQDVLDAYDGSDGILKHAKPG 78 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~-~~~~~l~~~g~~~~~s~~e~~~~adivi~~--v~~~~~~~~v~~~~~~l~~~l~~g 78 (286)
||.++|+.|+++|++|.+.+|+. +..+++.+. ..+. .+.+++++. +.++++++.++.. +.+...+=
T Consensus 16 IG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~-------~~~~-~g~~~~~~~~Dv~~~~~v~~~~~~---~~~~~G~i 84 (260)
T d1x1ta1 16 IGLGIATALAAQGADIVLNGFGDAAEIEKVRAG-------LAAQ-HGVKVLYDGADLSKGEAVRGLVDN---AVRQMGRI 84 (260)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSCHHHHHHHHHH-------HHHH-HTSCEEEECCCTTSHHHHHHHHHH---HHHHHSCC
T ss_pred HHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHH-------HHHh-cCCcEEEEECCCCCHHHHHHHHHH---HHHHhCCC
Confidence 79999999999999999999874 445544321 0000 122333332 4566777777654 43333344
Q ss_pred CEEEEcCCC
Q psy764 79 VIVIDSSTV 87 (286)
Q Consensus 79 ~ivid~st~ 87 (286)
+++|+....
T Consensus 85 DiLVnnAG~ 93 (260)
T d1x1ta1 85 DILVNNAGI 93 (260)
T ss_dssp SEEEECCCC
T ss_pred cEEEeeccc
Confidence 677766543
|
| >d2q46a1 c.2.1.2 (A:2-253) Hypothetical protein At5g02240 (T7H20_290) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Hypothetical protein At5g02240 (T7H20 290) species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=88.21 E-value=0.2 Score=37.99 Aligned_cols=54 Identities=9% Similarity=0.118 Sum_probs=37.2
Q ss_pred ccHHHHHHHHhCCCcEEE--EcCCchHHHHHHHcCC-------cccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIV--YDKNTDASQTLAKEGA-------NMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~--~dr~~~~~~~l~~~g~-------~~~~s~~e~~~~adivi~~v~ 56 (286)
||+.+++.|+++||+|.+ ..|++++.+.+.. ++ .-..+..++++++|.||.+..
T Consensus 15 iG~~l~~~Ll~~g~~v~v~~~~R~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~d~vi~~a~ 77 (252)
T d2q46a1 15 TGQIVYKKLKEGSDKFVAKGLVRSAQGKEKIGG-EADVFIGDITDADSINPAFQGIDALVILTS 77 (252)
T ss_dssp THHHHHHHHHHTTTTCEEEEEESCHHHHHHTTC-CTTEEECCTTSHHHHHHHHTTCSEEEECCC
T ss_pred HHHHHHHHHHHCCCcEEEEEEcCCHHHHHhccC-CcEEEEeeeccccccccccccceeeEEEEe
Confidence 899999999999987555 4688877655432 21 112234566778898887764
|
| >d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=88.11 E-value=0.18 Score=39.25 Aligned_cols=65 Identities=20% Similarity=0.224 Sum_probs=41.6
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCCCCCEE
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAKPGVIV 81 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~iv 81 (286)
||.++|+.|++.|++|.+.+|+.++.+.+ -.+-+-+.++++++.++.. +.+...+=+++
T Consensus 19 IG~aia~~la~~Ga~V~~~~r~~~~~~~~------------------~~~~~Dv~~~~~v~~~~~~---~~~~~g~iDiL 77 (237)
T d1uzma1 19 IGLAIAQRLAADGHKVAVTHRGSGAPKGL------------------FGVEVDVTDSDAVDRAFTA---VEEHQGPVEVL 77 (237)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSSCCCTTS------------------EEEECCTTCHHHHHHHHHH---HHHHHSSCSEE
T ss_pred HHHHHHHHHHHCCCEEEEEECCcchhcCc------------------eEEEEecCCHHHHHHHHHH---HHHhcCCceEE
Confidence 79999999999999999999987643211 1123334566666666653 33333333566
Q ss_pred EEcCCC
Q psy764 82 IDSSTV 87 (286)
Q Consensus 82 id~st~ 87 (286)
|+...+
T Consensus 78 VnnAG~ 83 (237)
T d1uzma1 78 VSNAGL 83 (237)
T ss_dssp EEECSC
T ss_pred Eeeecc
Confidence 665443
|
| >d1up7a1 c.2.1.5 (A:1-162) 6-phospho-beta-glucosidase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: 6-phospho-beta-glucosidase species: Thermotoga maritima [TaxId: 2336]
Probab=88.04 E-value=1.3 Score=31.77 Aligned_cols=45 Identities=13% Similarity=0.228 Sum_probs=33.7
Q ss_pred CCcEEEEcCCchHHHHHHHc---------CCcccCCHHHHhhcCcEEEEecCCh
Q psy764 14 GHDVIVYDKNTDASQTLAKE---------GANMALSLSTLASGAEFIISMLPAS 58 (286)
Q Consensus 14 G~~V~~~dr~~~~~~~l~~~---------g~~~~~s~~e~~~~adivi~~v~~~ 58 (286)
+.++..+|+++++.+..... ......+..+.+++||+||++...+
T Consensus 29 ~~el~L~Did~~k~~~~~d~~~~~~~~~~~~~~t~~~~~~l~~aDvVVita~~~ 82 (162)
T d1up7a1 29 IDEVIFYDIDEEKQKIVVDFVKRLVKDRFKVLISDTFEGAVVDAKYVIFQFRPG 82 (162)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHHHTTSSEEEECSSHHHHHTTCSEEEECCCTT
T ss_pred ccEEEEEecCcHHHHHHHHHHHhhhccCceEEEecCcccccCCCCEEEEecccC
Confidence 35899999999987644321 2355677889999999999988754
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.86 E-value=0.74 Score=33.25 Aligned_cols=57 Identities=12% Similarity=0.184 Sum_probs=40.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCccc-C-----CH-HHHhhcCcEEEEecCCh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMA-L-----SL-STLASGAEFIISMLPAS 58 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~-~-----s~-~e~~~~adivi~~v~~~ 58 (286)
+|...+..+...|.+|++.|++++|.+.+.+.|+..+ + .. +...+..|+++.|+...
T Consensus 39 vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~~lGa~~~i~~~~~~~~~~~~~~~~d~vi~~~~~~ 102 (168)
T d1piwa2 39 IGSMGTLISKAMGAETYVISRSSRKREDAMKMGADHYIATLEEGDWGEKYFDTFDLIVVCASSL 102 (168)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSSTTHHHHHHHTCSEEEEGGGTSCHHHHSCSCEEEEEECCSCS
T ss_pred cchhHHHHhhhccccccccccchhHHHHhhccCCcEEeeccchHHHHHhhhcccceEEEEecCC
Confidence 4666666666679999999999999999888886432 1 11 12234679999988754
|
| >d1ja9a_ c.2.1.2 (A:) 1,3,6,8-tetrahydroxynaphthalene reductase {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: 1,3,6,8-tetrahydroxynaphthalene reductase species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]
Probab=87.80 E-value=0.28 Score=38.48 Aligned_cols=30 Identities=23% Similarity=0.324 Sum_probs=24.1
Q ss_pred ccHHHHHHHHhCCCcEEE-EcCCchHHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIV-YDKNTDASQTLA 31 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~-~dr~~~~~~~l~ 31 (286)
||.++|+.|+++|++|.+ ++|+++..+.+.
T Consensus 18 IG~aia~~la~~G~~Vvi~~~~~~~~~~~~~ 48 (259)
T d1ja9a_ 18 IGRGIAIELGRRGASVVVNYGSSSKAAEEVV 48 (259)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEcCCChHHHHHHH
Confidence 799999999999999987 567766655543
|
| >d1vkna1 c.2.1.3 (A:1-144,A:308-339) N-acetyl-gamma-glutamyl-phosphate reductase ArgC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: N-acetyl-gamma-glutamyl-phosphate reductase ArgC species: Thermotoga maritima [TaxId: 2336]
Probab=87.56 E-value=0.7 Score=33.97 Aligned_cols=79 Identities=11% Similarity=0.111 Sum_probs=46.7
Q ss_pred ccHHHHHHHHhCCC-cEEEE-c-CCch-HHHHHHH--cC-C-cccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccc
Q psy764 2 ISTLKLFFLQFQGH-DVIVY-D-KNTD-ASQTLAK--EG-A-NMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILK 73 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~-d-r~~~-~~~~l~~--~g-~-~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~ 73 (286)
+|.-+.+.|.++-+ ++... . ++.. ++..... .+ . ....++++..+++|++|+|+|.... .+....
T Consensus 13 vG~eLirlL~~HP~~ei~~l~s~~~aG~~i~~~~p~~~~~~~~~~~~~~~~~~~~dvvf~a~p~~~s-~~~~~~------ 85 (176)
T d1vkna1 13 TGLELVRLLKNHPEAKITYLSSRTYAGKKLEEIFPSTLENSILSEFDPEKVSKNCDVLFTALPAGAS-YDLVRE------ 85 (176)
T ss_dssp HHHHHHHHHHHCTTEEEEEEECSTTTTSBHHHHCGGGCCCCBCBCCCHHHHHHHCSEEEECCSTTHH-HHHHTT------
T ss_pred HHHHHHHHHHhCCCceEEEeeccccCCCcccccCchhhccccccccCHhHhccccceEEEccccHHH-HHHHHh------
Confidence 57788888887654 44433 2 3322 2222211 11 1 1234567777899999999998654 444331
Q ss_pred cCCCCCEEEEcCCCCc
Q psy764 74 HAKPGVIVIDSSTVDP 89 (286)
Q Consensus 74 ~l~~g~ivid~st~~p 89 (286)
..+..|||.|+-.-
T Consensus 86 --~~~~~VIDlSadfR 99 (176)
T d1vkna1 86 --LKGVKIIDLGADFR 99 (176)
T ss_dssp --CCSCEEEESSSTTT
T ss_pred --hccceEEecCcccc
Confidence 25789999998643
|
| >d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces salmonicolor [TaxId: 5005]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Aldehyde reductase II species: Sporobolomyces salmonicolor [TaxId: 5005]
Probab=87.34 E-value=0.23 Score=40.57 Aligned_cols=55 Identities=13% Similarity=0.051 Sum_probs=40.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHc---------------CCcccCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKE---------------GANMALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~---------------g~~~~~s~~e~~~~adivi~~v~ 56 (286)
||+.+++.|+++||+|.+..|+.++...+... .+.-..+..+++.++|.|+-+..
T Consensus 23 IGs~l~~~Ll~~G~~V~~~vR~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~v~~~a~ 92 (342)
T d1y1pa1 23 VASHVVEQLLEHGYKVRGTARSASKLANLQKRWDAKYPGRFETAVVEDMLKQGAYDEVIKGAAGVAHIAS 92 (342)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHSTTTEEEEECSCTTSTTTTTTTTTTCSEEEECCC
T ss_pred HHHHHHHHHHHCcCEEEEEeCCchhHHHHHHhhhccccccccEEEeccccchhhhhhhcccchhhhhhcc
Confidence 79999999999999999999988776655331 01222345677889998886554
|
| >d1o5ia_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: beta-keto acyl carrier protein reductase species: Thermotoga maritima [TaxId: 2336]
Probab=87.21 E-value=0.18 Score=39.07 Aligned_cols=28 Identities=18% Similarity=0.236 Sum_probs=25.1
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQT 29 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~ 29 (286)
||.++|+.|+++|++|.+.+|+++++++
T Consensus 16 IG~aia~~l~~~Ga~V~~~~r~~~~l~~ 43 (234)
T d1o5ia_ 16 IGRAVADVLSQEGAEVTICARNEELLKR 43 (234)
T ss_dssp HHHHHHHHHHHTTCEEEEEESCHHHHHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCHHHHHh
Confidence 7999999999999999999999876553
|
| >d2ahra1 a.100.1.10 (A:153-256) Pyrroline-5-carboxylate reductase ProC {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: ProC C-terminal domain-like domain: Pyrroline-5-carboxylate reductase ProC species: Streptococcus pyogenes [TaxId: 1314]
Probab=87.16 E-value=0.12 Score=34.69 Aligned_cols=86 Identities=12% Similarity=0.029 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCc-ccccccCCCCCccccCCCCCCCCCCccchhHHHHHHHHHHHHh
Q psy764 168 LGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRC-WSSEVYNPVPGVLSNVPASNNYNGGFKISLLAKDMKLAEDLAN 246 (286)
Q Consensus 168 ~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s-~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~kd~~~~~~~a~ 246 (286)
++.++.++.++ +.+.|++.+...+++....-++ ........-|.. +.+..-+|++++.. .+...+
T Consensus 17 ~~~~~ea~~~~---~~~~Gl~~~~a~~l~~~t~~gs~~ll~~~~~~p~~----l~~~V~SpgGtT~a-------gl~~le 82 (104)
T d2ahra1 17 IYLFIEALAKA---GVKNGIPKAKALEIVTQTVLASASNLKTSSQSPHD----FIDAICSPGGTTIA-------GLMELE 82 (104)
T ss_dssp HHHHHHHHHHH---HHHTTCCHHHHHHHHHHHHHHHHHHHHHSSSCHHH----HHHHHCCTTSHHHH-------HHHHHH
T ss_pred HHHHHHHHHHH---HHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCCHHH----HHHhccCCChhHHH-------HHHHHH
Confidence 66667777766 8999999998888876542111 111111111111 12333467776666 445556
Q ss_pred hcCCCchHHHHHHHHHHHHHH
Q psy764 247 RCTAQTDLSKLATSIYKRLMD 267 (286)
Q Consensus 247 ~~g~~~p~~~~~~~~~~~a~~ 267 (286)
+.|++--+.+++..-++++.+
T Consensus 83 ~~~~~~~i~~a~~aA~~Rs~e 103 (104)
T d2ahra1 83 RLGLTATVSSAIDKTIDKAKS 103 (104)
T ss_dssp HHTHHHHHHHHHHHHHHHHHH
T ss_pred HCChHHHHHHHHHHHHHHHhc
Confidence 677777777777777776654
|
| >d5nula_ c.23.5.1 (A:) Flavodoxin {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Flavoproteins family: Flavodoxin-related domain: Flavodoxin species: Clostridium beijerinckii [TaxId: 1520]
Probab=87.15 E-value=2.8 Score=28.72 Aligned_cols=110 Identities=11% Similarity=0.027 Sum_probs=61.5
Q ss_pred HHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChh-------HHHHHhcCCccccccCC
Q psy764 4 TLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQ-------DVLDAYDGSDGILKHAK 76 (286)
Q Consensus 4 ~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~-------~~~~v~~~~~~l~~~l~ 76 (286)
..++..|.+.|++|.+++.+.. ++.+ +.++|.+|+..|+.. .++..+.. +.. ..
T Consensus 17 ~~ia~~l~~~g~~v~~~~~~~~--------------~~~~-l~~~~~~i~g~pt~~~g~~p~~~~~~~~~~---~~~-~~ 77 (138)
T d5nula_ 17 ELIAKGIIESGKDVNTINVSDV--------------NIDE-LLNEDILILGCSAMTDEVLEESEFEPFIEE---IST-KI 77 (138)
T ss_dssp HHHHHHHHHTTCCCEEEEGGGC--------------CHHH-HTTCSEEEEEECCBTTTBCCTTTHHHHHHH---HGG-GC
T ss_pred HHHHHHHHhcCCcceecccccc--------------cccc-cccCCeEEEEEeccCCCCCChHHHHHHHHH---hCc-cC
Confidence 4566777777888887765432 2333 357899999887531 24444432 222 23
Q ss_pred CCCEEEEcCC---CCchHHHHHHHHHHhcCCceEeccCCCCHHhhhcCceEEEecCCHhhHHHHHHHHHHhc
Q psy764 77 PGVIVIDSST---VDPQVPQTLSNLAREKQITFLDAPVSGGTKAAQEATLTFMVGGDKSSLEKAKPILKCMG 145 (286)
Q Consensus 77 ~g~ivid~st---~~p~~~~~~~~~~~~~g~~~~~~pv~g~~~~a~~g~l~~~~gg~~~~~~~~~~ll~~~g 145 (286)
+|+.+.-.+| ......+.+.+.+...|+..+..| ...-+.+++..++++++-+.++
T Consensus 78 ~gk~~~~f~s~g~~~~~~~~~~~~~l~~~G~~~v~~~-------------~~~~~~p~e~~~~~~~~g~~lA 136 (138)
T d5nula_ 78 SGKKVALFGSYGWGDGKWMRDFEERMNGYGCVVVETP-------------LIVQNEPDEAEQDCIEFGKKIA 136 (138)
T ss_dssp TTCEEEEEEEESSSCSHHHHHHHHHHHHTTCEECSCC-------------EEEESSCGGGHHHHHHHHHHHH
T ss_pred CCCcEEEEEEecCCCCHHHHHHHHHHHHCCCEEecCc-------------EEECCCCcHHHHHHHHHHHHHh
Confidence 4544433322 224556778888888887766422 1112234456667776665553
|
| >d1qsga_ c.2.1.2 (A:) Enoyl-ACP reductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Enoyl-ACP reductase species: Escherichia coli [TaxId: 562]
Probab=86.97 E-value=0.76 Score=35.57 Aligned_cols=29 Identities=10% Similarity=0.040 Sum_probs=23.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTL 30 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l 30 (286)
||.++|+.|+++|++|.+.+|+++..+.+
T Consensus 19 IG~aiA~~l~~~G~~V~i~~~~~~~~~~~ 47 (258)
T d1qsga_ 19 IAYGIAQAMHREGAELAFTYQNDKLKGRV 47 (258)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSTTTHHHH
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 56899999999999999999986644433
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=86.69 E-value=0.37 Score=35.15 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=36.8
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHh------hcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLA------SGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~------~~adivi~~v~ 56 (286)
+|....+-....|.+|++.++++++.+.+.+.|+...-+..+.. ++.|+||=|+.
T Consensus 40 vG~~aiqlak~~G~~vi~~~~~~~~~~~~~~lGa~~~i~~~~~~~~~~~~~g~D~v~d~~G 100 (171)
T d1iz0a2 40 LGTAAVQVARAMGLRVLAAASRPEKLALPLALGAEEAATYAEVPERAKAWGGLDLVLEVRG 100 (171)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSGGGSHHHHHTTCSEEEEGGGHHHHHHHTTSEEEEEECSC
T ss_pred chhhhhhhhcccccccccccccccccccccccccceeeehhhhhhhhhccccccccccccc
Confidence 45555665666799999999999999988888865443332221 24666666654
|
| >d1t4ba1 c.2.1.3 (A:1-133,A:355-367) Aspartate beta-semialdehyde dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=86.36 E-value=0.22 Score=35.62 Aligned_cols=81 Identities=5% Similarity=0.036 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhCC-C---cEEEEcCCchHHHH--HHHcCCccc-CCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQG-H---DVIVYDKNTDASQT--LAKEGANMA-LSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~---~V~~~dr~~~~~~~--l~~~g~~~~-~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
+|+-+.+.|.++. | +++.+..+...-.. ......... ....+..+++|++|+|+|++. .+.+... +.+
T Consensus 13 VGqeli~~Ll~~~~~p~~~l~~~~ss~s~g~~~~~~~~~~~~~~~~~~~~~~~~DivF~a~~~~~-s~~~~~~---~~~- 87 (146)
T d1t4ba1 13 VGSVLMQRMVEERDFDAIRPVFFSTSQLGQAAPSFGGTTGTLQDAFDLEALKALDIIVTCQGGDY-TNEIYPK---LRE- 87 (146)
T ss_dssp HHHHHHHHHHHTTGGGGSEEEEEESSSTTSBCCGGGTCCCBCEETTCHHHHHTCSEEEECSCHHH-HHHHHHH---HHH-
T ss_pred HHHHHHHHHHhCCCCCeeEEEEeeccccccccccccCCceeeecccchhhhhcCcEEEEecCchH-HHHhhHH---HHh-
Confidence 6788887776653 3 45555444322111 111112222 222345689999999999653 3444321 221
Q ss_pred CCCCCEEEEcCCC
Q psy764 75 AKPGVIVIDSSTV 87 (286)
Q Consensus 75 l~~g~ivid~st~ 87 (286)
...+.+|||.|+.
T Consensus 88 ~g~~~~VID~Ss~ 100 (146)
T d1t4ba1 88 SGWQGYWIDAASS 100 (146)
T ss_dssp TTCCCEEEECSST
T ss_pred cCCCeecccCCcc
Confidence 2233589999874
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=86.26 E-value=0.92 Score=33.02 Aligned_cols=64 Identities=13% Similarity=0.201 Sum_probs=44.2
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCcccCC-------HHHHh-----hcCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMALS-------LSTLA-----SGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s-------~~e~~-----~~adivi~~v~~~~~~~~v~ 65 (286)
+|...+..+...|. +|++.|++++|.+...+.|+...-+ ..+.. ...|++|-|+..+...+..+
T Consensus 39 vGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~~lGa~~~i~~~~~d~~~~~~~~~~~~~G~d~vid~~g~~~~~~~~~ 115 (174)
T d1p0fa2 39 VGFSAIVGCKAAGASRIIGVGTHKDKFPKAIELGATECLNPKDYDKPIYEVICEKTNGGVDYAVECAGRIETMMNAL 115 (174)
T ss_dssp HHHHHHHHHHHHTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHH
T ss_pred hhHHHHHHHHHcCCceeeccCChHHHHHHHHHcCCcEEEcCCCchhHHHHHHHHhcCCCCcEEEEcCCCchHHHHHH
Confidence 46666666666775 7999999999999888888764321 22232 24788888888766655554
|
| >d1qyda_ c.2.1.2 (A:) Pinoresinol-lariciresinol reductase {Giant arborvitae (Thuja plicata) [TaxId: 3316]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Pinoresinol-lariciresinol reductase species: Giant arborvitae (Thuja plicata) [TaxId: 3316]
Probab=85.65 E-value=0.49 Score=37.29 Aligned_cols=56 Identities=18% Similarity=0.115 Sum_probs=39.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-----H---HHHHHcCCccc-------CCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-----S---QTLAKEGANMA-------LSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-----~---~~l~~~g~~~~-------~s~~e~~~~adivi~~v~~ 57 (286)
+|+.++..|+++||+|++.+|++.. . ..+...++... ++..+..++++.++.+.+.
T Consensus 15 iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~~~~~~~~~~~v~~v~~d~~d~~~~~~~~~~~~~~~~~~~~ 85 (312)
T d1qyda_ 15 IGKRIVNASISLGHPTYVLFRPEVVSNIDKVQMLLYFKQLGAKLIEASLDDHQRLVDALKQVDVVISALAG 85 (312)
T ss_dssp THHHHHHHHHHTTCCEEEECCSCCSSCHHHHHHHHHHHTTTCEEECCCSSCHHHHHHHHTTCSEEEECCCC
T ss_pred HHHHHHHHHHhCCCEEEEEECCCcccchhHHHHHhhhccCCcEEEEeecccchhhhhhccCcchhhhhhhh
Confidence 8999999999999999999987532 2 22333344322 2345567789999988864
|
| >d2nu7a1 c.2.1.8 (A:2-120) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Escherichia coli [TaxId: 562]
Probab=84.94 E-value=1 Score=30.63 Aligned_cols=97 Identities=12% Similarity=0.050 Sum_probs=63.8
Q ss_pred cHHHHHHHHhCCCcEE-EEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCC
Q psy764 3 STLKLFFLQFQGHDVI-VYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGV 79 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~-~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~ 79 (286)
|+..++.+.+.|-+|. +.+ |.|--. .-.|+.++++.+|+++ ++|.-++-||.+.+...+++. +-..+ ..
T Consensus 19 G~~ht~~m~~yGT~vVaGVt--PgkgG~-~~~giPVf~sV~eAv~~~~~~~SvIfVPp~~a~dA~~EA---i~agI--~~ 90 (119)
T d2nu7a1 19 GTFHSEQAIAYGTKMVGGVT--PGKGGT-THLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEA---IDAGI--KL 90 (119)
T ss_dssp HHHHHHHHHHHTCEEEEEEC--TTCTTE-EETTEEEESSHHHHHHHHCCCEEEECCCGGGHHHHHHHH---HHTTC--SE
T ss_pred HHHHHHHHHHhCCceEEEEc--cCCCCc-ccCCCchhhHHHHHHHHhCCCeEEEeccHHHHHHHHHHH---HHCCC--CE
Confidence 5556667777777644 333 332110 0137889999999886 689999999988777777764 22222 24
Q ss_pred EEEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 80 IVIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 80 ivid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
+++-+-.+.+.+..++.+.+.+++.+++
T Consensus 91 iV~ITEgIP~~D~~~i~~~~~~~~~~li 118 (119)
T d2nu7a1 91 IITITEGIPTLDMLTVKVKLDEAGVRMI 118 (119)
T ss_dssp EEECCCCCCHHHHHHHHHHHHHHTCEEE
T ss_pred EEEecCCCCHHHHHHHHHHHhhCCCEEe
Confidence 5555556777888888888887777654
|
| >d1oaaa_ c.2.1.2 (A:) Sepiapterin reductase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Sepiapterin reductase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=84.92 E-value=0.3 Score=38.27 Aligned_cols=58 Identities=14% Similarity=0.145 Sum_probs=38.3
Q ss_pred ccHHHHHHHHh---CCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEe--cCChhHHHHHhc
Q psy764 2 ISTLKLFFLQF---QGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISM--LPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~---~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~--v~~~~~~~~v~~ 66 (286)
||.++|+.|++ +|++|.+.+|++++.+.+.+. +..--.+.++.++. +.++++++.++.
T Consensus 18 IG~aiA~~lA~~~~~G~~Vv~~~r~~~~l~~~~~~-------l~~~~~~~~~~~~~~Dvs~~~~v~~l~~ 80 (259)
T d1oaaa_ 18 FGRALAPQLARLLSPGSVMLVSARSESMLRQLKEE-------LGAQQPDLKVVLAAADLGTEAGVQRLLS 80 (259)
T ss_dssp HHHHHHHHHHTTBCTTCEEEEEESCHHHHHHHHHH-------HHHHCTTSEEEEEECCTTSHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCEEEEEECCHHHHHHHHHH-------HHhhcCCceEEEEEccCCCHHHHHHHHH
Confidence 79999999986 799999999999988776532 11111122333322 566777777664
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=84.89 E-value=2 Score=31.14 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=45.4
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCcccCC-------HHHHh-----hcCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMALS-------LSTLA-----SGAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s-------~~e~~-----~~adivi~~v~~~~~~~~v~~ 66 (286)
||...+..+...|. .|++.|++++|.+...+.|+...-+ ..... ...|++|-|+..+..+++.+.
T Consensus 40 iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~ 117 (174)
T d1e3ia2 40 VGLSAIIGCKIAGASRIIAIDINGEKFPKAKALGATDCLNPRELDKPVQDVITELTAGGVDYSLDCAGTAQTLKAAVD 117 (174)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHHTSCBSEEEESSCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCceeeeeccchHHHHHHHHhCCCcccCCccchhhhhhhHhhhhcCCCcEEEEecccchHHHHHHH
Confidence 46666777777787 6888999999998888888643321 12222 357899999988776666554
|
| >d1dlja3 c.26.3.1 (A:295-402) UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Adenine nucleotide alpha hydrolase-like superfamily: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain family: UDP-glucose/GDP-mannose dehydrogenase C-terminal domain domain: UDP-glucose dehydrogenase (UDPGDH), C-terminal (UDP-binding) domain species: Streptococcus pyogenes [TaxId: 1314]
Probab=84.71 E-value=0.33 Score=32.70 Aligned_cols=57 Identities=12% Similarity=0.215 Sum_probs=40.7
Q ss_pred HHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHH
Q psy764 5 LKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDA 64 (286)
Q Consensus 5 ~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v 64 (286)
-+...|.+.|.+|.+||..-...+ ...+.....++.++.+.+|+||+...+ ..+..+
T Consensus 39 ~ii~~L~~~g~~v~iyDP~v~~~~--~~~~~~~~~~l~~~~~~sDiII~~~~~-~~~~~~ 95 (108)
T d1dlja3 39 DVIDILKSKDIKIIIYEPMLNKLE--SEDQSVLVNDLENFKKQANIIVTNRYD-NELQDV 95 (108)
T ss_dssp HHHHHHHTSSCEEEEECTTCSCCC--TTCCSEECCCHHHHHHHCSEEECSSCC-GGGGGG
T ss_pred HHHHHHhccccceeeecCCcChhH--hccCCEEEeCHHHHHhhCCEEEEcCCc-hHHHhc
Confidence 467889999999999998754321 123567788999999999987766554 444433
|
| >d2cmda1 c.2.1.5 (A:1-145) Malate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: Malate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=84.30 E-value=1.4 Score=31.13 Aligned_cols=56 Identities=13% Similarity=0.128 Sum_probs=34.2
Q ss_pred ccHHHHHHHHh-CC--CcEEEEcCCchHHH---HHHHcC------CcccCCHHHHhhcCcEEEEecCC
Q psy764 2 ISTLKLFFLQF-QG--HDVIVYDKNTDASQ---TLAKEG------ANMALSLSTLASGAEFIISMLPA 57 (286)
Q Consensus 2 ~G~~lA~~L~~-~G--~~V~~~dr~~~~~~---~l~~~g------~~~~~s~~e~~~~adivi~~v~~ 57 (286)
+|+++|..|.. .+ .++..+|+.+.... .+.... .....+..+.++++|+||++-..
T Consensus 12 VG~~~a~~l~~~~~~~~el~L~D~~~~~~g~a~Dl~h~~~~~~~~~~~~~~~~~~~~~aDvvvitaG~ 79 (145)
T d2cmda1 12 IGQALALLLKTQLPSGSELSLYDIAPVTPGVAVDLSHIPTAVKIKGFSGEDATPALEGADVVLISAGV 79 (145)
T ss_dssp HHHHHHHHHHHHSCTTCEEEEECSSTTHHHHHHHHHTSCSSCEEEEECSSCCHHHHTTCSEEEECCSC
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccccchhHHHHHHCCccccCCcEEEcCCCccccCCCCEEEECCCc
Confidence 68888887753 34 68999998753211 222211 11113334577899999998753
|
| >d1yo6a1 c.2.1.2 (A:1-250) Putative carbonyl reductase sniffer {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative carbonyl reductase sniffer species: Caenorhabditis elegans [TaxId: 6239]
Probab=84.07 E-value=0.59 Score=36.24 Aligned_cols=73 Identities=10% Similarity=0.029 Sum_probs=46.4
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCchHHHHHHHcCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC--C
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTDASQTLAKEGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK--P 77 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~--~ 77 (286)
||.++|+.|++.|+ .|+...|+.++.+++.+.. . .++.++.+=+.+.++++++... +.+... +
T Consensus 15 IG~a~a~~la~~G~~~~Vi~~~R~~~~~~~l~~~~----~------~~~~~~~~Dvs~~~~v~~~~~~---i~~~~~~~~ 81 (250)
T d1yo6a1 15 IGLGLVQQLVKDKNIRHIIATARDVEKATELKSIK----D------SRVHVLPLTVTCDKSLDTFVSK---VGEIVGSDG 81 (250)
T ss_dssp HHHHHHHHHHTCTTCCEEEEEESSGGGCHHHHTCC----C------TTEEEEECCTTCHHHHHHHHHH---HHHHHGGGC
T ss_pred HHHHHHHHHHHCCCCCEEEEEeCCHHHHHHHHHhh----C------CceEEEEEecCCHHHHHHHHHH---HHHHhCCCC
Confidence 79999999999996 5777799999888775431 0 1233444446777777777653 332221 1
Q ss_pred CCEEEEcCCC
Q psy764 78 GVIVIDSSTV 87 (286)
Q Consensus 78 g~ivid~st~ 87 (286)
=+++|+...+
T Consensus 82 idilinnAG~ 91 (250)
T d1yo6a1 82 LSLLINNAGV 91 (250)
T ss_dssp CCEEEECCCC
T ss_pred eEEEEEcCcc
Confidence 2567766543
|
| >d1hyea1 c.2.1.5 (A:1-145) MJ0490, lactate/malate dehydrogenase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: LDH N-terminal domain-like domain: MJ0490, lactate/malate dehydrogenase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.03 E-value=0.83 Score=32.35 Aligned_cols=55 Identities=9% Similarity=0.174 Sum_probs=36.4
Q ss_pred ccHHHHHHHHhCCC--cEEEEcCCch--HHH----HHHHc----C--Ccc---cCCHHHHhhcCcEEEEecC
Q psy764 2 ISTLKLFFLQFQGH--DVIVYDKNTD--ASQ----TLAKE----G--ANM---ALSLSTLASGAEFIISMLP 56 (286)
Q Consensus 2 ~G~~lA~~L~~~G~--~V~~~dr~~~--~~~----~l~~~----g--~~~---~~s~~e~~~~adivi~~v~ 56 (286)
+|.++|..|+.+|. ++.++|++++ +++ .+... + .+. .++..+.+++||+||++..
T Consensus 12 VG~~~a~~l~~~~l~~el~L~D~~~~~~~~~g~a~Dl~~~~~~~~~~~~~~~~~~~d~~~l~~aDvVVitAG 83 (145)
T d1hyea1 12 VGSATALLLAKEPFMKDLVLIGREHSINKLEGLREDIYDALAGTRSDANIYVESDENLRIIDESDVVIITSG 83 (145)
T ss_dssp HHHHHHHHHHTCTTCCEEEEEECGGGHHHHHHHHHHHHHHHTTSCCCCEEEEEETTCGGGGTTCSEEEECCS
T ss_pred HHHHHHHHHHhCCcccccccccchhhhHhhhcccccchhcccccccCCccccCCcchHHHhccceEEEEecc
Confidence 68899999999884 8999999864 222 22221 1 111 1223457789999999854
|
| >d1oi7a1 c.2.1.8 (A:1-121) Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: CoA-binding domain domain: Succinyl-CoA synthetase, alpha-chain, N-terminal (CoA-binding) domain species: Thermus thermophilus [TaxId: 274]
Probab=83.80 E-value=1.1 Score=30.56 Aligned_cols=98 Identities=8% Similarity=0.019 Sum_probs=61.8
Q ss_pred cHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCcccCCHHHHhh--cCcEEEEecCChhHHHHHhcCCccccccCCCCCE
Q psy764 3 STLKLFFLQFQGHDVIVYDKNTDASQTLAKEGANMALSLSTLAS--GAEFIISMLPASQDVLDAYDGSDGILKHAKPGVI 80 (286)
Q Consensus 3 G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~~~~s~~e~~~--~adivi~~v~~~~~~~~v~~~~~~l~~~l~~g~i 80 (286)
|+--++...+.|-+|..- .+|.|--.- -.|+.++++.+|+++ ++|.-++.||.+.+...+++. +-..+ ..+
T Consensus 20 G~~ht~~m~~yGT~iVaG-VtPgkgG~~-~~giPVf~tV~eAv~~~~~d~SvIfVPp~~a~dAi~EA---i~agI--~li 92 (121)
T d1oi7a1 20 GQFHTKQMLTYGTKIVAG-VTPGKGGME-VLGVPVYDTVKEAVAHHEVDASIIFVPAPAAADAALEA---AHAGI--PLI 92 (121)
T ss_dssp HHHHHHHHHHHTCEEEEE-ECTTCTTCE-ETTEEEESSHHHHHHHSCCSEEEECCCHHHHHHHHHHH---HHTTC--SEE
T ss_pred HHHHHHHHHHhCCceEee-eecCCCCcE-EECCchHhhHHHHHHhcCCeEEEEeeCHHHHHHHHHHH---HhCCC--cEE
Confidence 455566666667654322 223221100 036889999999886 689999999977666777663 22222 234
Q ss_pred EEEcCCCCchHHHHHHHHHHhcCCceE
Q psy764 81 VIDSSTVDPQVPQTLSNLAREKQITFL 107 (286)
Q Consensus 81 vid~st~~p~~~~~~~~~~~~~g~~~~ 107 (286)
++-+-.+.+.+..++.+.+.+++.+++
T Consensus 93 v~ITEgVPv~Dm~~i~~~~~~~~~~li 119 (121)
T d1oi7a1 93 VLITEGIPTLDMVRAVEEIKALGSRLI 119 (121)
T ss_dssp EECCSCCCHHHHHHHHHHHHHHTCEEE
T ss_pred EEecCCCCHHHHHHHHHHHHhCCCEEe
Confidence 555556777788888888888776655
|
| >d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Human (Homo sapiens), different isozymes [TaxId: 9606]
Probab=83.39 E-value=3 Score=29.77 Aligned_cols=63 Identities=14% Similarity=0.161 Sum_probs=40.5
Q ss_pred cHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCccc-------CCHHHHh-----hcCcEEEEecCChhHHHHHh
Q psy764 3 STLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMA-------LSLSTLA-----SGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 3 G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~-------~s~~e~~-----~~adivi~~v~~~~~~~~v~ 65 (286)
|...+..+...|. .|++.++++++.+...+.|+..+ ++..+.. ...|+||-++..+...+...
T Consensus 41 G~~aiq~ak~~G~~~vi~~~~~~~k~~~ak~lGa~~~i~~~~~~~~~~~~~~~~~~~g~D~vid~~G~~~~~~~~~ 116 (176)
T d2fzwa2 41 GLAVIMGCKVAGASRIIGVDINKDKFARAKEFGATECINPQDFSKPIQEVLIEMTDGGVDYSFECIGNVKVMRAAL 116 (176)
T ss_dssp HHHHHHHHHHHTCSEEEEECSCGGGHHHHHHHTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCceEEEcccHHHHHHHHHhCCcEEEeCCchhhHHHHHHHHHcCCCCcEeeecCCCHHHHHHHH
Confidence 4555555566675 68888999999888888886433 1222222 24788888887765555544
|
| >d2hjsa1 c.2.1.3 (A:3-129,A:320-336) Usg-1 protein homolog PA3116 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Usg-1 protein homolog PA3116 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=83.10 E-value=0.095 Score=37.55 Aligned_cols=80 Identities=14% Similarity=0.014 Sum_probs=44.3
Q ss_pred ccHHHHHHHHhCCC---cEEEEcCCchHHHHHHH--cCCcccCCHHHHhhcCcEEEEecCChhHHHHHhcCCccccccCC
Q psy764 2 ISTLKLFFLQFQGH---DVIVYDKNTDASQTLAK--EGANMALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKHAK 76 (286)
Q Consensus 2 ~G~~lA~~L~~~G~---~V~~~dr~~~~~~~l~~--~g~~~~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~l~ 76 (286)
+|.-+.+.|.+.+| ++.....+...-+.+.. ......+...+...++|++|+|+|.. ....... ....
T Consensus 14 vG~eli~lL~~~~hP~~~l~~~~s~~~~Gk~i~~~~~~~~~~~~~~~~~~~~d~vf~a~p~~-~s~~~~~------~~~~ 86 (144)
T d2hjsa1 14 VGEALVGLLDERDFPLHRLHLLASAESAGQRMGFAESSLRVGDVDSFDFSSVGLAFFAAAAE-VSRAHAE------RARA 86 (144)
T ss_dssp HHHHHHHHHHHTTCCCSCEEEEECTTTTTCEEEETTEEEECEEGGGCCGGGCSEEEECSCHH-HHHHHHH------HHHH
T ss_pred HHHHHHHHHHhcCCCceEEEEEeecccCCcceeeccccchhccchhhhhccceEEEecCCcc-hhhhhcc------cccc
Confidence 57888888876665 55544222111111100 01122222234567899999999964 3344332 1245
Q ss_pred CCCEEEEcCCCC
Q psy764 77 PGVIVIDSSTVD 88 (286)
Q Consensus 77 ~g~ivid~st~~ 88 (286)
+|..|||.|+..
T Consensus 87 ~g~~VID~Ss~f 98 (144)
T d2hjsa1 87 AGCSVIDLSGAL 98 (144)
T ss_dssp TTCEEEETTCTT
T ss_pred CCceEEeechhh
Confidence 789999998753
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.51 E-value=1 Score=32.65 Aligned_cols=35 Identities=9% Similarity=0.156 Sum_probs=26.5
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCCc
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGAN 36 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~~ 36 (286)
+|....+-....|.+|++.++++++.+.+.+.|+.
T Consensus 41 vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~Ga~ 75 (174)
T d1yb5a2 41 VGLAACQIARAYGLKILGTAGTEEGQKIVLQNGAH 75 (174)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSHHHHHHHHHTTCS
T ss_pred ccccccccccccCcccccccccccccccccccCcc
Confidence 45555665667799999998888888888777763
|
| >d1mxha_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Dihydropteridin reductase (pteridine reductase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=82.01 E-value=0.42 Score=37.21 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=23.0
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA 26 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~ 26 (286)
||.++|+.|+++|++|.+.+|+.++
T Consensus 13 IG~aia~~la~~G~~Vvi~~r~~~~ 37 (266)
T d1mxha_ 13 IGHSIAVRLHQQGFRVVVHYRHSEG 37 (266)
T ss_dssp HHHHHHHHHHHTTCEEEEEESSCHH
T ss_pred HHHHHHHHHHHCCCEEEEEECCchH
Confidence 7999999999999999999998665
|
| >d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Horse (Equus caballus) [TaxId: 9796]
Probab=81.62 E-value=3.3 Score=29.66 Aligned_cols=64 Identities=16% Similarity=0.242 Sum_probs=43.2
Q ss_pred ccHHHHHHHHhCCC-cEEEEcCCchHHHHHHHcCCcccCC-------HHHHh-----hcCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGH-DVIVYDKNTDASQTLAKEGANMALS-------LSTLA-----SGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~-~V~~~dr~~~~~~~l~~~g~~~~~s-------~~e~~-----~~adivi~~v~~~~~~~~v~ 65 (286)
+|...+..+...|. +|++.+++++|.+...+.|+...-+ ..+.. ...|++|-++..+...+..+
T Consensus 40 ~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~~Ga~~~i~~~~~~~~~~~~~~~~~~~G~D~vid~~G~~~~~~~a~ 116 (176)
T d2jhfa2 40 VGLSVIMGCKAAGAARIIGVDINKDKFAKAKEVGATECVNPQDYKKPIQEVLTEMSNGGVDFSFEVIGRLDTMVTAL 116 (176)
T ss_dssp HHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHTTCSEEECGGGCSSCHHHHHHHHTTSCBSEEEECSCCHHHHHHHH
T ss_pred cHHHHHHHHHHcCCceEEeecCcHHHHHHHHHhCCeeEEecCCchhHHHHHHHHHhcCCCCEEEecCCchhHHHHHH
Confidence 46667777777774 8999999999999888887543211 22222 24788888888765555544
|
| >d1bg6a1 a.100.1.5 (A:188-359) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: 6-phosphogluconate dehydrogenase C-terminal domain-like superfamily: 6-phosphogluconate dehydrogenase C-terminal domain-like family: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=81.51 E-value=2.9 Score=30.29 Aligned_cols=110 Identities=14% Similarity=0.110 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCCHHHHHHHHHccCCCcc--cccccCCCCCccccCCCCCCCCC-CccchhHHHHHHH----
Q psy764 168 LGVTMMGVAEAMNLGVKLGMNAKLLSDVINTSSGRCW--SSEVYNPVPGVLSNVPASNNYNG-GFKISLLAKDMKL---- 240 (286)
Q Consensus 168 ~~~~~~~~~Ea~~l~~~~Gl~~~~~~~~~~~~~~~s~--~~~~~~~~~~~~~~~~~~~~~~~-~f~~~~~~kd~~~---- 240 (286)
...+.+.=.|-++++++.|++...+.+.....-+... ..+.+...+.. ++-..| .+.-..+..|+.+
T Consensus 44 ~~~l~alD~Er~aIa~alg~~~~~~~~~~~~~y~~~~~~l~~~~~~~~~~------~~~~~P~~~~hRYi~EDvp~GLv~ 117 (172)
T d1bg6a1 44 GSLAEKVDAERIAIAKAFDLNVPSVCEWYKESYGQSPATIYEAVQGNPAY------RGIAGPINLNTRYFFEDVSTGLVP 117 (172)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCCCHHHHC-------CCSHHHHHHTCGGG------TTCBCCSSSCCHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHcCCCcchHHHHHhcCccc------cCCCCCCCccccceeccccchHHH
Confidence 4444556677888888888875444444332211100 00000000000 000011 3334456777654
Q ss_pred HHHHHhhcCCCchHHHHHHHHHHHHHH------------cCCCCCchhHHHHHHh
Q psy764 241 AEDLANRCTAQTDLSKLATSIYKRLMD------------KGCQDKDFSYIYEFLK 283 (286)
Q Consensus 241 ~~~~a~~~g~~~p~~~~~~~~~~~a~~------------~g~g~~d~~~~~~~~~ 283 (286)
+..+++..|++.|+++.+..+.+.... .|+++.+...|.+.++
T Consensus 118 ~~~la~~~gV~tP~i~~ii~~a~~~~g~d~~~~Grtl~~lgl~~~s~~~l~~~~e 172 (172)
T d1bg6a1 118 LSELGRAVNVPTPLIDAVLDLISSLIDTDFRKEGRTLEKLGLSGLTAAGIRSAVE 172 (172)
T ss_dssp HHHHHHHTTCCCHHHHHHHHHHHHHTTCCHHHHSCCTTTTTCTTCCHHHHHHHHC
T ss_pred HHHHHHHhCCCchhHHHHHHHHHHHHCcCHHhcCCCHHHCCCCCCCHHHHHHHhC
Confidence 789999999999999999998776654 3777788777777653
|
| >d1mb4a1 c.2.1.3 (A:1-132,A:355-369) Aspartate beta-semialdehyde dehydrogenase {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain domain: Aspartate beta-semialdehyde dehydrogenase species: Vibrio cholerae [TaxId: 666]
Probab=81.42 E-value=0.85 Score=32.44 Aligned_cols=81 Identities=9% Similarity=0.062 Sum_probs=41.6
Q ss_pred ccHHHHHHHHhC-CC---cEEEEc--CCchHHHHHHHcCCcc-cCCHHHHhhcCcEEEEecCChhHHHHHhcCCcccccc
Q psy764 2 ISTLKLFFLQFQ-GH---DVIVYD--KNTDASQTLAKEGANM-ALSLSTLASGAEFIISMLPASQDVLDAYDGSDGILKH 74 (286)
Q Consensus 2 ~G~~lA~~L~~~-G~---~V~~~d--r~~~~~~~l~~~g~~~-~~s~~e~~~~adivi~~v~~~~~~~~v~~~~~~l~~~ 74 (286)
+|.-+.+.|.++ .| ++..+. ++..+.-.+...-... ...-.+..+++|++|+|+|+. ..+++... +.+
T Consensus 12 vG~eLi~lLl~~~~~p~~~i~~~ss~~~~gk~~~~~~~~~~~~~~~~~~~~~~~DvvF~alp~~-~s~~~~~~---l~~- 86 (147)
T d1mb4a1 12 VGSVLMQRMVEERDFDLIEPVFFSTSQIGVPAPNFGKDAGMLHDAFDIESLKQLDAVITCQGGS-YTEKVYPA---LRQ- 86 (147)
T ss_dssp HHHHHHHHHHHTTGGGGSEEEEEESSCCSSBCCCSSSCCCBCEETTCHHHHTTCSEEEECSCHH-HHHHHHHH---HHH-
T ss_pred HHHHHHHHHHhcCCCCceEEEEeccccccccccccCCcceeeecccchhhhccccEEEEecCch-HHHHHhHH---HHH-
Confidence 577888877654 34 444332 2222211111111111 112235568999999999964 44444431 222
Q ss_pred CCCCCEEEEcCCC
Q psy764 75 AKPGVIVIDSSTV 87 (286)
Q Consensus 75 l~~g~ivid~st~ 87 (286)
...+.+|||.|+.
T Consensus 87 ~g~~~~VIDlSsd 99 (147)
T d1mb4a1 87 AGWKGYWIDAAST 99 (147)
T ss_dssp TTCCSEEEESSST
T ss_pred cCCceEEEeCCcc
Confidence 1233579999875
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.41 E-value=1.2 Score=32.27 Aligned_cols=34 Identities=9% Similarity=0.185 Sum_probs=25.4
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchHHHHHHHcCC
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDASQTLAKEGA 35 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~~~~l~~~g~ 35 (286)
+|...++.+...|.+|.+..+++++.+.+.+.|+
T Consensus 38 vG~~~iqla~~~g~~vi~~~~~~~~~~~l~~~Ga 71 (183)
T d1pqwa_ 38 VGMAAVSIAKMIGARIYTTAGSDAKREMLSRLGV 71 (183)
T ss_dssp HHHHHHHHHHHHTCEEEEEESSHHHHHHHHTTCC
T ss_pred cccccchhhccccccceeeecccccccccccccc
Confidence 4666666666678888888888888877776664
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=80.76 E-value=0.62 Score=33.80 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=42.0
Q ss_pred ccHHHHHHHHhCC-CcEEEEcCCchHHHHHHHcCCccc----CC-HHHHhh-----cCcEEEEecCChhHHHHHhc
Q psy764 2 ISTLKLFFLQFQG-HDVIVYDKNTDASQTLAKEGANMA----LS-LSTLAS-----GAEFIISMLPASQDVLDAYD 66 (286)
Q Consensus 2 ~G~~lA~~L~~~G-~~V~~~dr~~~~~~~l~~~g~~~~----~s-~~e~~~-----~adivi~~v~~~~~~~~v~~ 66 (286)
+|...+.-+...| ..|.+.+++++|.+.+.+.|...+ ++ .++..+ ..|+||-|+..+..++..+.
T Consensus 44 vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~~~ga~~~i~~~~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~ 119 (172)
T d1h2ba2 44 LGHIAVQLLKVMTPATVIALDVKEEKLKLAERLGADHVVDARRDPVKQVMELTRGRGVNVAMDFVGSQATVDYTPY 119 (172)
T ss_dssp HHHHHHHHHHHHCCCEEEEEESSHHHHHHHHHTTCSEEEETTSCHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGG
T ss_pred HHHHHHHHHHhhcCcccccccchhHHHHHHhhcccceeecCcccHHHHHHHhhCCCCceEEEEecCcchHHHHHHH
Confidence 4555555555556 478888999999998888875422 12 222222 47889998887666666554
|
| >d1gz6a_ c.2.1.2 (A:) (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: (3R)-hydroxyacyl-CoA dehydrogenase domain of estradiol 17 beta-Dehydrogenase 4 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.47 E-value=3.2 Score=32.95 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.9
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCch
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTD 25 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~ 25 (286)
||.++|+.|+++|++|.+.||+.+
T Consensus 19 IG~aiA~~la~~Ga~Vvi~d~~~~ 42 (302)
T d1gz6a_ 19 LGRAYALAFAERGALVVVNDLGGD 42 (302)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCBC
T ss_pred HHHHHHHHHHHcCCEEEEEeCCch
Confidence 799999999999999999988754
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=80.22 E-value=1 Score=30.12 Aligned_cols=64 Identities=14% Similarity=-0.022 Sum_probs=38.2
Q ss_pred ccHHHHHHHHhCCCcEEEEcCCchH-HHHHHHc-CCcccCC--HHHHhhcCcEEEEecCChhHHHHHh
Q psy764 2 ISTLKLFFLQFQGHDVIVYDKNTDA-SQTLAKE-GANMALS--LSTLASGAEFIISMLPASQDVLDAY 65 (286)
Q Consensus 2 ~G~~lA~~L~~~G~~V~~~dr~~~~-~~~l~~~-g~~~~~s--~~e~~~~adivi~~v~~~~~~~~v~ 65 (286)
+|..-++.|++.|.+|++++..... ...+.+. +++.... -.+.+.++++|+.|..++..-+.+.
T Consensus 23 va~~ka~~ll~~ga~v~v~~~~~~~~~~~~~~~~~i~~~~~~~~~~dl~~~~lv~~at~d~~~n~~i~ 90 (113)
T d1pjqa1 23 VAERKARLLLEAGARLTVNALTFIPQFTVWANEGMLTLVEGPFDETLLDSCWLAIAATDDDTVNQRVS 90 (113)
T ss_dssp HHHHHHHHHHHTTBEEEEEESSCCHHHHHHHTTTSCEEEESSCCGGGGTTCSEEEECCSCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCeEEEEeccCChHHHHHHhcCCceeeccCCCHHHhCCCcEEeecCCCHHHHHHHH
Confidence 5677889999999999999766433 3333333 3322211 1234567788888777653333433
|