Psyllid ID: psy7658

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE
Secondary Structure (PSIPRED)
ccccccHHHHHHHcccccccccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHccHHHHHccccccccccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHcccccccccccEEEEEHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHcHHHHHHccccEEEccccccccEEEEEEccc
Coil and Loop (DISEMBL)
MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVIsgesgsgkteCTKLVMQYLAAVNkspsnlitEQILEAspllesfgnaktvrndnssrfGKFLQVHFKE
Flexible Loop (DISEMBL)
MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFgnaktvrndnssrfgkflqvhfke
Low Complexity Region (SEG)
MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE
Disordered region (IsUnstruct)
***MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLL***************************
Disordered Region (DISOPRED)
MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK*****I*EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK*
Disordered Region (DISEMBL)
MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE
Disordered Region (DISPRO)
MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q9UKN7	3530	Unconventional myosin-XV	yes	N/A	0.964	0.031	0.567	2e-31
Q17LW0	2163	Myosin-VIIa OS=Aedes aegy	N/A	N/A	0.947	0.049	0.572	5e-31
Q9V3Z6	2167	Myosin-VIIa OS=Drosophila	no	N/A	0.947	0.049	0.563	3e-30
Q9QZZ4	3511	Unconventional myosin-XV	no	N/A	0.964	0.031	0.567	4e-30
Q29P71	2168	Myosin-VIIa OS=Drosophila	no	N/A	0.947	0.049	0.563	4e-30
Q622K8	2099	Unconventional myosin hea	N/A	N/A	0.964	0.052	0.544	7e-30
P91443	2098	Unconventional myosin hea	yes	N/A	0.964	0.052	0.544	7e-30
Q9I8D1	1276	Unconventional myosin-VI	no	N/A	0.956	0.085	0.531	1e-28
Q99MZ6	2113	Unconventional myosin-VII	no	N/A	0.973	0.052	0.513	2e-28
Q28970	566	Unconventional myosin-VII	yes	N/A	0.964	0.194	0.491	5e-28

>sp|Q9UKN7|MYO15_HUMAN Unconventional myosin-XV OS=Homo sapiens GN=MYO15A PE=1 SV=2

 Score =  134 bits (336), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 63/111 (56%), Positives = 86/111 (77%), Gaps = 1/111 (0%)

Query: 1    MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSA-LATSGNQVVVISGESGSGKTECTK 59
            M+ +YG + V++Y G+ LG   PHLFA+ + A++  L    NQ ++ISGESGSGKTE TK
Sbjct: 1267 MFGIYGPEQVQQYNGRALGENPPHLFAVANLAFAKMLDAKQNQCIIISGESGSGKTEATK 1326

Query: 60   LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 110
            L+++YLAA+N+    +   +ILEA+PLLESFGNAKTVRNDNSSRFGKF+++
Sbjct: 1327 LILRYLAAMNQKREVMQQIKILEATPLLESFGNAKTVRNDNSSRFGKFVEI 1377

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Required for the arrangement of stereocilia in mature hair bundles.
Homo sapiens (taxid: 9606)

>sp|Q17LW0|MYO7A_AEDAE Myosin-VIIa OS=Aedes aegypti GN=ck PE=3 SV=1

 Score =  132 bits (333), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 63/110 (57%), Positives = 86/110 (78%), Gaps = 2/110 (1%)

Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y  D +K Y+ + +G L PH+FAIG  +Y+ +   G +Q +VISGESG+GKTE TKL++
Sbjct: 106 IYTADQIKLYKERKIGELPPHIFAIGDNSYANMRRYGQDQCIVISGESGAGKTESTKLIL 165

Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLAA++   S  I +QILEA+P+LE+FGNAKTVRNDNSSRFGK++ +HF
Sbjct: 166 QYLAAISGKHS-WIEQQILEANPILEAFGNAKTVRNDNSSRFGKYIDIHF 214

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements: can function in cells as a single-molecule cargo transporter. A very slow and high-duty-ratio motor, may be suitable for tension maintenance of actin filaments. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Plays a key role in the formation of cellular projections and other actin-based functions required for embryonic and larval viability. Necessary for auditory transduction: plays a role in Johnston organ (JO) organization by functioning in scolopidial apical attachment and therefore to acoustic stimulus propagation from the antenna a2/a3 joint to transducing elements.

Aedes aegypti (taxid: 7159)

>sp|Q9V3Z6|MYO7A_DROME Myosin-VIIa OS=Drosophila melanogaster GN=ck PE=1 SV=1

 Score =  130 bits (326), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 62/110 (56%), Positives = 85/110 (77%), Gaps = 2/110 (1%)

Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  D +K Y+ + +G L PH+FAIG  AY+ +     +Q +VISGESG+GKTE TKL++
Sbjct: 111 IYTGDQIKLYKERKIGELPPHIFAIGDNAYAHMKRYRQDQCIVISGESGAGKTESTKLIL 170

Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLAA++   S  I +QILEA+P+LE+FGNAKT+RNDNSSRFGK++ +HF
Sbjct: 171 QYLAAISGKHS-WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHF 219

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements: can function in cells as a single-molecule cargo transporter. A very slow and high-duty-ratio motor, may be suitable for tension maintenance of actin filaments. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Plays a key role in the formation of cellular projections and other actin-based functions required for embryonic and larval viability. Necessary for auditory transduction: plays a role in Johnston organ (JO) organization by functioning in scolopidial apical attachment and therefore to acoustic stimulus propagation from the antenna a2/a3 joint to transducing elements.

Drosophila melanogaster (taxid: 7227)

>sp|Q9QZZ4|MYO15_MOUSE Unconventional myosin-XV OS=Mus musculus GN=Myo15a PE=1 SV=2

 Score =  129 bits (325), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 63/111 (56%), Positives = 85/111 (76%), Gaps = 1/111 (0%)

Query: 1    MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSA-LATSGNQVVVISGESGSGKTECTK 59
            M+ +YG + V++Y G+ LG   PHLFAI + A++  L    NQ V+ISGESGSGKTE TK
Sbjct: 1251 MFAIYGPEQVQQYSGRALGENPPHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATK 1310

Query: 60   LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 110
            L+++ LAA+N+    +   +ILEA+PLLE+FGNAKTVRNDNSSRFGKF+++
Sbjct: 1311 LILRCLAAMNQRRDVMQQIKILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 1361

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments (By similarity). Required for the arrangement of stereocilia in mature hair bundles.

Mus musculus (taxid: 10090)

>sp|Q29P71|MYO7A_DROPS Myosin-VIIa OS=Drosophila pseudoobscura pseudoobscura GN=ck PE=3 SV=1

 Score =  129 bits (325), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 62/110 (56%), Positives = 85/110 (77%), Gaps = 2/110 (1%)

Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATS-GNQVVVISGESGSGKTECTKLVM 62
           +Y  D +K Y+ + +G L PH+FAIG  AY+ +     +Q +VISGESG+GKTE TKL++
Sbjct: 111 IYTGDQIKLYKERKIGELPPHIFAIGDNAYAHMKRYLQDQCIVISGESGAGKTESTKLIL 170

Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLAA++   S  I +QILEA+P+LE+FGNAKT+RNDNSSRFGK++ +HF
Sbjct: 171 QYLAAISGKHS-WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHF 219

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements: can function in cells as a single-molecule cargo transporter. A very slow and high-duty-ratio motor, may be suitable for tension maintenance of actin filaments. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. Plays a key role in the formation of cellular projections and other actin-based functions required for embryonic and larval viability. Necessary for auditory transduction: plays a role in Johnston organ (JO) organization by functioning in scolopidial apical attachment and therefore to acoustic stimulus propagation from the antenna a2/a3 joint to transducing elements.

Drosophila pseudoobscura pseudoobscura (taxid: 46245)

>sp|Q622K8|HUM6_CAEBR Unconventional myosin heavy chain 6 OS=Caenorhabditis briggsae GN=hum-6 PE=3 SV=1

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 84/112 (75%), Gaps = 2/112 (1%)

Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y  D ++ Y+ + +G L PH+FAI   AY+ +     NQ V+ISGESG+GKTE TKLV+
Sbjct: 110 IYTADEIRMYKRKRIGELPPHIFAIADNAYTNMRREKKNQSVIISGESGAGKTESTKLVL 169

Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           Q+LA ++   S  I +Q+LEA+P+LE+FGNAKT+RNDNSSRFGK++ VHF E
Sbjct: 170 QFLATISGQHS-WIEQQVLEANPVLEAFGNAKTIRNDNSSRFGKYIDVHFNE 220

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments.

Caenorhabditis briggsae (taxid: 6238)

>sp|P91443|HUM6_CAEEL Unconventional myosin heavy chain 6 OS=Caenorhabditis elegans GN=hum-6 PE=1 SV=1

 Score =  129 bits (323), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 61/112 (54%), Positives = 84/112 (75%), Gaps = 2/112 (1%)

Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y  D ++ Y+ + +G L PH+FAI   AY+ +     NQ V+ISGESG+GKTE TKLV+
Sbjct: 110 IYTADEIRMYKRKRIGELPPHIFAIADNAYTNMRREKKNQSVIISGESGAGKTESTKLVL 169

Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           Q+LA ++   S  I +Q+LEA+P+LE+FGNAKT+RNDNSSRFGK++ VHF E
Sbjct: 170 QFLATISGQHS-WIEQQVLEANPVLEAFGNAKTIRNDNSSRFGKYIDVHFNE 220

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9I8D1|MYO6_CHICK Unconventional myosin-VI OS=Gallus gallus GN=MYO6 PE=1 SV=1

 Score =  124 bits (311), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 59/111 (53%), Positives = 83/111 (74%), Gaps = 2/111 (1%)

Query: 5   YGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQ 63
           Y  D +KKY+G+ LGTL PH+FAI   AY  +     +Q +++SGESG+GKTE TK V++
Sbjct: 107 YSSDAIKKYQGRSLGTLPPHVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFVLR 166

Query: 64  YLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           YL     +  + I ++I+EA+PLLE+FGNAKT+RN+NSSRFGKF+++HF E
Sbjct: 167 YLTESYGTGQD-IDDRIVEANPLLEAFGNAKTIRNNNSSRFGKFVEIHFNE 216

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Myosin 6 is a reverse-direction motor protein that moves towards the minus-end of actin filaments. Has slow rate of actin-activated ADP release due to weak ATP binding. Functions in a variety of intracellular processes such as vesicular membrane trafficking and cell migration. Required for the structural integrity of the Golgi apparatus via the p53-dependent pro-survival pathway. Appears to be involved in a very early step of clathrin-mediated endocytosis in polarized epithelial cells. May act as a regulator of F-actin dynamics. May play a role in transporting DAB2 from the plasma membrane to specific cellular targets.

Gallus gallus (taxid: 9031)

>sp|Q99MZ6|MYO7B_MOUSE Unconventional myosin-VIIb OS=Mus musculus GN=Myo7b PE=1 SV=3

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 58/113 (51%), Positives = 84/113 (74%), Gaps = 2/113 (1%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTK 59
           M  +Y L+ V+ Y  + +G L PH+FAI ++ Y  +  +  +Q  +ISGESG+GKTE TK
Sbjct: 110 MLPLYTLEQVQIYYSRHMGELPPHIFAIANSCYFNMKKNKRDQCCIISGESGAGKTETTK 169

Query: 60  LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           L++Q+LA V+   S  I +Q+LEA+P+LE+FGNAKT+RNDNSSRFGK++ +HF
Sbjct: 170 LILQFLATVSGQHS-WIEQQVLEANPILEAFGNAKTIRNDNSSRFGKYIDIHF 221

Myosins are actin-based motor molecules with ATPase activity. Their highly divergent tails are presumed to bind to membranous compartments, which would be moved relative to actin filaments. May be have a role in the apical membranes of transporting epithelia.

Mus musculus (taxid: 10090)

>sp|Q28970|MYO7A_PIG Unconventional myosin-VIIa (Fragment) OS=Sus scrofa GN=MYO7A PE=2 SV=1

 Score =  122 bits (307), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 83/112 (74%), Gaps = 2/112 (1%)

Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +++Y  + +G + PH+FAI    Y  +   S +Q  +ISGESG+GKTE TKL++
Sbjct: 115 IYSPEHIRQYTNKKIGEMPPHIFAIADNCYFNMKRNSRDQCCIISGESGAGKTESTKLIL 174

Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           Q+LAA++   S  I +Q+LEA+P+LE+FGNAKT+RNDNSSRFGK++ +HF +
Sbjct: 175 QFLAAISGQHS-WIEQQVLEATPILEAFGNAKTIRNDNSSRFGKYIDIHFNK 225

Myosins are actin-based motor molecules with ATPase activity. Unconventional myosins serve in intracellular movements. Their highly divergent tails bind to membranous compartments, which are then moved relative to actin filaments. In the retina, plays an important role in the renewal of the outer photoreceptor disks. Plays an important role in the distribution and migration of retinal pigment epithelial (RPE) melanosomes and phagosomes, and in the regulation of opsin transport in retinal photoreceptors. In the inner ear, plays an important role in differentiation, morphogenesis and organization of cochlear hair cell bundles. Motor protein that is a part of the functional network formed by USH1C, USH1G, CDH23 and MYO7A that mediates mechanotransduction in cochlear hair cells. Required for normal hearing. Involved in hair-cell vesicle trafficking of aminoglycosides, which are known to induce ototoxicity.

Sus scrofa (taxid: 9823)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
328712705	2782	PREDICTED: myosin-XV isoform 2 [Acyrthos	0.991	0.040	0.903	1e-53
328712707	2918	PREDICTED: myosin-XV isoform 1 [Acyrthos	0.991	0.038	0.903	2e-53
242017795	2941	myosin XV, putative [Pediculus humanus c	0.982	0.038	0.858	2e-50
332018715	2920	Myosin-XV [Acromyrmex echinatior]	1.0	0.039	0.762	2e-47
350416998	3668	PREDICTED: LOW QUALITY PROTEIN: myosin-X	1.0	0.031	0.754	1e-46
345482651	3625	PREDICTED: LOW QUALITY PROTEIN: hypothet	1.0	0.031	0.762	1e-46
328779437	3642	PREDICTED: hypothetical protein LOC40844	1.0	0.031	0.754	2e-46
307171858	3189	Myosin-XV [Camponotus floridanus]	1.0	0.035	0.762	2e-46
307208120	4137	Myosin-XV [Harpegnathos saltator]	1.0	0.027	0.762	3e-46
322784026	2964	hypothetical protein SINV_11150 [Solenop	1.0	0.038	0.762	6e-46

>gi|328712705|ref|XP_003244885.1| PREDICTED: myosin-XV isoform 2 [Acyrthosiphon pisum]

 Score =  213 bits (541), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 103/114 (90%), Positives = 107/114 (93%), Gaps = 1/114 (0%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKL 60
           MYDMYGLDMVKKYEGQILGTL PHLFA+GSAAY  L   GNQVVVISGESGSGKTE TKL
Sbjct: 125 MYDMYGLDMVKKYEGQILGTLPPHLFAVGSAAYGMLP-RGNQVVVISGESGSGKTESTKL 183

Query: 61  VMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFL+VHFK+
Sbjct: 184 IMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLEVHFKQ 237

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328712707|ref|XP_001944282.2| PREDICTED: myosin-XV isoform 1 [Acyrthosiphon pisum]

 Score =  213 bits (541), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/114 (90%), Positives = 107/114 (93%), Gaps = 1/114 (0%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKL 60
           MYDMYGLDMVKKYEGQILGTL PHLFA+GSAAY  L   GNQVVVISGESGSGKTE TKL
Sbjct: 261 MYDMYGLDMVKKYEGQILGTLPPHLFAVGSAAYGMLP-RGNQVVVISGESGSGKTESTKL 319

Query: 61  VMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFL+VHFK+
Sbjct: 320 IMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLEVHFKQ 373

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017795|ref|XP_002429372.1| myosin XV, putative [Pediculus humanus corporis] gi|212514281|gb|EEB16634.1| myosin XV, putative [Pediculus humanus corporis]

 Score =  202 bits (514), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/113 (85%), Positives = 107/113 (94%), Gaps = 1/113 (0%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTK 59
           M+D+YGLDMVKKYE QILGTL PHLFAIGS+AY+AL  +G +QVVVISGESG+GKTE TK
Sbjct: 42  MFDIYGLDMVKKYENQILGTLPPHLFAIGSSAYAALNKTGESQVVVISGESGAGKTESTK 101

Query: 60  LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           LVMQYLAAVNKSPSNL+TEQILEASPLLESFGNAKTVRNDNSSRFGK+L+VHF
Sbjct: 102 LVMQYLAAVNKSPSNLVTEQILEASPLLESFGNAKTVRNDNSSRFGKYLEVHF 154

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018715|gb|EGI59287.1| Myosin-XV [Acromyrmex echinatior]

 Score =  192 bits (488), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 90/118 (76%), Positives = 106/118 (89%), Gaps = 4/118 (3%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA----TSGNQVVVISGESGSGKTE 56
           M+D+YGLD VK YEG+ILGTL PHLFA+GS+AYS +     +S NQVVVISGESGSGKTE
Sbjct: 66  MFDIYGLDQVKLYEGRILGTLPPHLFAVGSSAYSQVTAANNSSANQVVVISGESGSGKTE 125

Query: 57  CTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
            TKLVMQYLAAVN++P+NL+TEQILEA+PLLESFGNAKT RNDNSSRFGK+L+VHF++
Sbjct: 126 STKLVMQYLAAVNRAPNNLVTEQILEATPLLESFGNAKTPRNDNSSRFGKYLEVHFRD 183

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416998|ref|XP_003491207.1| PREDICTED: LOW QUALITY PROTEIN: myosin-XV-like [Bombus impatiens]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 105/118 (88%), Gaps = 4/118 (3%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT----SGNQVVVISGESGSGKTE 56
           M+D+YGLD VK YEG+ILGTL PHLFA+GS+AYS +      S NQVVVISGESGSGKTE
Sbjct: 702 MFDIYGLDQVKLYEGRILGTLPPHLFAVGSSAYSQVTAANNASANQVVVISGESGSGKTE 761

Query: 57  CTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
            TKLVMQYLAAVN++P+NL+TEQILEA+PLLESFGNAKT RNDNSSRFGK+L+V+F++
Sbjct: 762 STKLVMQYLAAVNRAPNNLVTEQILEATPLLESFGNAKTPRNDNSSRFGKYLEVYFRD 819

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482651|ref|XP_001608000.2| PREDICTED: LOW QUALITY PROTEIN: hypothetical protein LOC100124138 [Nasonia vitripennis]

 Score =  189 bits (481), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 90/118 (76%), Positives = 105/118 (88%), Gaps = 4/118 (3%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT----SGNQVVVISGESGSGKTE 56
           M+D+YGLD VK YEG+ILGTL PHLFA+GS+AYS ++     S NQVVVISGESGSGKTE
Sbjct: 647 MFDIYGLDQVKLYEGRILGTLPPHLFAVGSSAYSQVSAANNASANQVVVISGESGSGKTE 706

Query: 57  CTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
            TKLVMQYLAAVN++PSNL+TEQILEA+PLLESFGNAKT RNDNSSRFGK+L+V F++
Sbjct: 707 STKLVMQYLAAVNRAPSNLVTEQILEAAPLLESFGNAKTPRNDNSSRFGKYLEVFFRD 764

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779437|ref|XP_391992.4| PREDICTED: hypothetical protein LOC408444 [Apis mellifera]

 Score =  189 bits (480), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 105/118 (88%), Gaps = 4/118 (3%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT----SGNQVVVISGESGSGKTE 56
           M+D+YGLD VK YEG+ILGTL PHLFA+GS+AYS +      S NQVVVISGESGSGKTE
Sbjct: 681 MFDIYGLDQVKLYEGRILGTLPPHLFAVGSSAYSQVTAANNASANQVVVISGESGSGKTE 740

Query: 57  CTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
            TKLVMQYLAAVN++P+NL+TEQILEA+PLLESFGNAKT RNDNSSRFGK+L+V+F++
Sbjct: 741 STKLVMQYLAAVNRAPNNLVTEQILEATPLLESFGNAKTPRNDNSSRFGKYLEVYFRD 798

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171858|gb|EFN63513.1| Myosin-XV [Camponotus floridanus]

 Score =  189 bits (479), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 90/118 (76%), Positives = 106/118 (89%), Gaps = 4/118 (3%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA----TSGNQVVVISGESGSGKTE 56
           M+D+YGLD VK YEG+ILGTL PHLFA+GS+AYS +     +S NQVVVISGESGSGKTE
Sbjct: 670 MFDIYGLDQVKLYEGRILGTLPPHLFAVGSSAYSQVTAANNSSANQVVVISGESGSGKTE 729

Query: 57  CTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
            TKLVMQYLAAVN++P+NL+TEQILEA+PLLESFGNAKT RNDNSSRFGK+L+VHF++
Sbjct: 730 STKLVMQYLAAVNRAPNNLVTEQILEATPLLESFGNAKTPRNDNSSRFGKYLEVHFRD 787

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307208120|gb|EFN85624.1| Myosin-XV [Harpegnathos saltator]

 Score =  188 bits (478), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 90/118 (76%), Positives = 106/118 (89%), Gaps = 4/118 (3%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA----TSGNQVVVISGESGSGKTE 56
           M+D+YGLD VK YEG+ILGTL PHLFA+GS+AYS +     +S NQVVVISGESGSGKTE
Sbjct: 676 MFDIYGLDQVKLYEGRILGTLPPHLFAVGSSAYSQVTAANNSSANQVVVISGESGSGKTE 735

Query: 57  CTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
            TKLVMQYLAAVN++P+NL+TEQILEA+PLLESFGNAKT RNDNSSRFGK+L+VHF++
Sbjct: 736 STKLVMQYLAAVNRAPNNLVTEQILEATPLLESFGNAKTPRNDNSSRFGKYLEVHFRD 793

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322784026|gb|EFZ11166.1| hypothetical protein SINV_11150 [Solenopsis invicta]

 Score =  187 bits (476), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 90/118 (76%), Positives = 106/118 (89%), Gaps = 4/118 (3%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA----TSGNQVVVISGESGSGKTE 56
           M+D+YGLD VK YEG+ILGTL PHLFA+GS+AYS +     +S NQVVVISGESGSGKTE
Sbjct: 631 MFDIYGLDQVKLYEGRILGTLPPHLFAVGSSAYSQVTAANNSSANQVVVISGESGSGKTE 690

Query: 57  CTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
            TKLVMQYLAAVN++P+NL+TEQILEA+PLLESFGNAKT RNDNSSRFGK+L+VHF++
Sbjct: 691 STKLVMQYLAAVNRAPNNLVTEQILEATPLLESFGNAKTPRNDNSSRFGKYLEVHFRD 748

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
FB|FBgn0263705	3145	Myo10A "Myosin 10A" [Drosophil	0.956	0.034	0.701	3.1e-33
ZFIN|ZDB-GENE-080425-2	4115	myo15aa "myosin XVAa" [Danio r	0.982	0.027	0.591	1.1e-29
ZFIN|ZDB-GENE-090312-149	2375	myo15ab "myosin XVAb" [Danio r	0.982	0.047	0.582	1.9e-29
UNIPROTKB|Q9UKN7	3530	MYO15A "Unconventional myosin-	0.964	0.031	0.567	2.6e-28
UNIPROTKB|E1BT10	2081	E1BT10 "Uncharacterized protei	0.982	0.053	0.565	3.9e-28
UNIPROTKB|Q17LW0	2163	ck "Myosin-VIIa" [Aedes aegypt	0.947	0.049	0.572	1.8e-27
UNIPROTKB|F1MG13	3498	MYO15A "Uncharacterized protei	0.964	0.031	0.567	4.6e-27
MGI|MGI:1261811	3511	Myo15 "myosin XV" [Mus musculu	0.964	0.031	0.567	9.6e-27
FB|FBgn0000317	2167	ck "crinkled" [Drosophila mela	0.947	0.049	0.563	1.3e-26
UNIPROTKB|Q29P71	2168	ck "Myosin-VIIa" [Drosophila p	0.947	0.049	0.563	1.6e-26

FB|FBgn0263705 Myo10A "Myosin 10A" [Drosophila melanogaster (taxid:7227)]

 Score = 380 (138.8 bits), Expect = 3.1e-33, P = 3.1e-33
 Identities = 80/114 (70%), Positives = 96/114 (84%)

Query:     3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVM 62
             D YGL++ K+Y G+ LG+L PHLFAIG+AA++AL +   QVVVISGESGSGKTE TKLVM
Sbjct:   203 DAYGLEVAKQYAGRPLGSLPPHLFAIGAAAHAALPSP--QVVVISGESGSGKTESTKLVM 260

Query:    63 QYLAAV---NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK 113
             QYLAAV     S S +ITEQILEA+PLLE+FGNA+T RNDNSSRFGK+L+V+FK
Sbjct:   261 QYLAAVVPGGGSASAVITEQILEAAPLLEAFGNARTARNDNSSRFGKYLEVYFK 314

GO:0016461 "unconventional myosin complex" evidence=ISS;NAS

GO:0016459 "myosin complex" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0030175 "filopodium" evidence=IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0046847 "filopodium assembly" evidence=IMP

GO:0007391 "dorsal closure" evidence=IMP

GO:0006886 "intracellular protein transport" evidence=IMP

ZFIN|ZDB-GENE-080425-2 myo15aa "myosin XVAa" [Danio rerio (taxid:7955)]

 Score = 348 (127.6 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 68/115 (59%), Positives = 93/115 (80%)

Query:     1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTK 59
             M+++YG DMV +++G  LG   PHLFAI +A+Y+ +  +  NQ ++ISGESGSGKTE TK
Sbjct:  1877 MFNIYGTDMVLQHKGHALGENPPHLFAIANASYTKMMDAKENQCIIISGESGSGKTETTK 1936

Query:    60 LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
             LV++YLAA++   +  IT+QILEA+PLLESFGNAKTVRNDNSSRFGK++++  +E
Sbjct:  1937 LVLRYLAAIHHKQN--ITQQILEATPLLESFGNAKTVRNDNSSRFGKYMEIFMEE 1989

GO:0016459 "myosin complex" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

ZFIN|ZDB-GENE-090312-149 myo15ab "myosin XVAb" [Danio rerio (taxid:7955)]

 Score = 343 (125.8 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 67/115 (58%), Positives = 89/115 (77%)

Query:     1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTK 59
             ++++YG DMV +YEG  +    PHLFAI + AY+ +     NQ ++ISGESGSGKTE TK
Sbjct:    64 LFNIYGTDMVLQYEGHAMADNPPHLFAIANVAYTTMMDIKQNQCIIISGESGSGKTEATK 123

Query:    60 LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
             LV++YL A++   +  IT+QILEA+PLLESFGNAKTVRNDNSSRFGKF+++  +E
Sbjct:   124 LVLRYLTAIHHKRN--ITQQILEATPLLESFGNAKTVRNDNSSRFGKFVEIFLEE 176

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

UNIPROTKB|Q9UKN7 MYO15A "Unconventional myosin-XV" [Homo sapiens (taxid:9606)]

 Score = 325 (119.5 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
 Identities = 63/111 (56%), Positives = 86/111 (77%)

Query:     1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSA-LATSGNQVVVISGESGSGKTECTK 59
             M+ +YG + V++Y G+ LG   PHLFA+ + A++  L    NQ ++ISGESGSGKTE TK
Sbjct:  1267 MFGIYGPEQVQQYNGRALGENPPHLFAVANLAFAKMLDAKQNQCIIISGESGSGKTEATK 1326

Query:    60 LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 110
             L+++YLAA+N+    +   +ILEA+PLLESFGNAKTVRNDNSSRFGKF+++
Sbjct:  1327 LILRYLAAMNQKREVMQQIKILEATPLLESFGNAKTVRNDNSSRFGKFVEI 1377

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

UNIPROTKB|E1BT10 E1BT10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 330 (121.2 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 69/122 (56%), Positives = 92/122 (75%)

Query:     1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTK 59
             +Y++YG++ V +YEG+ LG   PHLFAI + AYS +  +  NQ +VISGESGSGKTE TK
Sbjct:    64 LYNIYGMEQVLQYEGRALGENPPHLFAIANVAYSKMMDAKHNQCIVISGESGSGKTEATK 123

Query:    60 LVMQ-------YLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
             L+++       YLAAV++  S    +QILEA+PLLESFGNAKTVRNDNSSRFGKF+++  
Sbjct:   124 LILRATKLILRYLAAVSQKRST--AQQILEATPLLESFGNAKTVRNDNSSRFGKFVEIFL 181

Query:   113 KE 114
             ++
Sbjct:   182 ED 183

GO:0003774 "motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0042472 "inner ear morphogenesis" evidence=IEA

UNIPROTKB|Q17LW0 ck "Myosin-VIIa" [Aedes aegypti (taxid:7159)]

 Score = 324 (119.1 bits), Expect = 1.8e-27, P = 1.8e-27
 Identities = 63/110 (57%), Positives = 86/110 (78%)

Query:     4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
             +Y  D +K Y+ + +G L PH+FAIG  +Y+ +   G +Q +VISGESG+GKTE TKL++
Sbjct:   106 IYTADQIKLYKERKIGELPPHIFAIGDNSYANMRRYGQDQCIVISGESGAGKTESTKLIL 165

Query:    63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
             QYLAA++   S  I +QILEA+P+LE+FGNAKTVRNDNSSRFGK++ +HF
Sbjct:   166 QYLAAISGKHS-WIEQQILEANPILEAFGNAKTVRNDNSSRFGKYIDIHF 214

GO:0005524 "ATP binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0008407 "chaeta morphogenesis" evidence=ISS

GO:0030048 "actin filament-based movement" evidence=ISS

GO:0030898 "actin-dependent ATPase activity" evidence=ISS

GO:0032027 "myosin light chain binding" evidence=ISS

GO:0035317 "imaginal disc-derived wing hair organization" evidence=ISS

GO:0048800 "antennal morphogenesis" evidence=ISS

UNIPROTKB|F1MG13 MYO15A "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 317 (116.6 bits), Expect = 4.6e-27, Sum P(2) = 4.6e-27
 Identities = 63/111 (56%), Positives = 84/111 (75%)

Query:     1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSA-LATSGNQVVVISGESGSGKTECTK 59
             M+ +YG + V++Y G+ L    PHLFAI + A++  L    NQ ++ISGESGSGKTE TK
Sbjct:  1230 MFGIYGPEQVQQYSGRALAENPPHLFAIANLAFAKMLDAKQNQCIIISGESGSGKTEATK 1289

Query:    60 LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 110
             L+++YLAA+++        QILEA+PLLESFGNAKTVRNDNSSRFGKF+++
Sbjct:  1290 LILRYLAAMSQKRGVTRQVQILEATPLLESFGNAKTVRNDNSSRFGKFVEI 1340

GO:0042472 "inner ear morphogenesis" evidence=IEA

GO:0032420 "stereocilium" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IEA

GO:0016459 "myosin complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

MGI|MGI:1261811 Myo15 "myosin XV" [Mus musculus (taxid:10090)]

 Score = 313 (115.2 bits), Expect = 9.6e-27, Sum P(2) = 9.6e-27
 Identities = 63/111 (56%), Positives = 85/111 (76%)

Query:     1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSA-LATSGNQVVVISGESGSGKTECTK 59
             M+ +YG + V++Y G+ LG   PHLFAI + A++  L    NQ V+ISGESGSGKTE TK
Sbjct:  1251 MFAIYGPEQVQQYSGRALGENPPHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATK 1310

Query:    60 LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 110
             L+++ LAA+N+    +   +ILEA+PLLE+FGNAKTVRNDNSSRFGKF+++
Sbjct:  1311 LILRCLAAMNQRRDVMQQIKILEATPLLEAFGNAKTVRNDNSSRFGKFVEI 1361

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0003779 "actin binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016459 "myosin complex" evidence=IEA

GO:0032420 "stereocilium" evidence=IDA

GO:0032421 "stereocilium bundle" evidence=IDA

GO:0042472 "inner ear morphogenesis" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

FB|FBgn0000317 ck "crinkled" [Drosophila melanogaster (taxid:7227)]

 Score = 316 (116.3 bits), Expect = 1.3e-26, P = 1.3e-26
 Identities = 62/110 (56%), Positives = 85/110 (77%)

Query:     4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
             +Y  D +K Y+ + +G L PH+FAIG  AY+ +     +Q +VISGESG+GKTE TKL++
Sbjct:   111 IYTGDQIKLYKERKIGELPPHIFAIGDNAYAHMKRYRQDQCIVISGESGAGKTESTKLIL 170

Query:    63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
             QYLAA++   S  I +QILEA+P+LE+FGNAKT+RNDNSSRFGK++ +HF
Sbjct:   171 QYLAAISGKHS-WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHF 219

GO:0016461 "unconventional myosin complex" evidence=ISS

GO:0003779 "actin binding" evidence=ISS

GO:0003774 "motor activity" evidence=ISS

GO:0042623 "ATPase activity, coupled" evidence=ISS

GO:0016459 "myosin complex" evidence=ISS

GO:0035317 "imaginal disc-derived wing hair organization" evidence=IGI

GO:0048800 "antennal morphogenesis" evidence=IMP

GO:0008407 "chaeta morphogenesis" evidence=IMP

GO:0008586 "imaginal disc-derived wing vein morphogenesis" evidence=IGI

GO:0007605 "sensory perception of sound" evidence=IMP

GO:0030898 "actin-dependent ATPase activity" evidence=IDA

GO:0005524 "ATP binding" evidence=IDA

GO:0030048 "actin filament-based movement" evidence=IDA

GO:0032027 "myosin light chain binding" evidence=IPI

GO:0031477 "myosin VII complex" evidence=IPI

GO:0045179 "apical cortex" evidence=IDA

GO:0005902 "microvillus" evidence=IDA

GO:0007469 "antennal development" evidence=IMP

GO:0007423 "sensory organ development" evidence=IMP

GO:0007015 "actin filament organization" evidence=IMP

GO:0035293 "chitin-based larval cuticle pattern formation" evidence=IGI

UNIPROTKB|Q29P71 ck "Myosin-VIIa" [Drosophila pseudoobscura pseudoobscura (taxid:46245)]

 Score = 315 (115.9 bits), Expect = 1.6e-26, P = 1.6e-26
 Identities = 62/110 (56%), Positives = 85/110 (77%)

Query:     4 MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATS-GNQVVVISGESGSGKTECTKLVM 62
             +Y  D +K Y+ + +G L PH+FAIG  AY+ +     +Q +VISGESG+GKTE TKL++
Sbjct:   111 IYTGDQIKLYKERKIGELPPHIFAIGDNAYAHMKRYLQDQCIVISGESGAGKTESTKLIL 170

Query:    63 QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
             QYLAA++   S  I +QILEA+P+LE+FGNAKT+RNDNSSRFGK++ +HF
Sbjct:   171 QYLAAISGKHS-WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHF 219

GO:0005524 "ATP binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0007605 "sensory perception of sound" evidence=ISS

GO:0008407 "chaeta morphogenesis" evidence=ISS

GO:0030048 "actin filament-based movement" evidence=ISS

GO:0030898 "actin-dependent ATPase activity" evidence=ISS

GO:0032027 "myosin light chain binding" evidence=ISS

GO:0035317 "imaginal disc-derived wing hair organization" evidence=ISS

GO:0048800 "antennal morphogenesis" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9U1M8	MYOI_DICDI	No assigned EC number	0.5090	0.9473	0.0458	yes	N/A
P91443	HUM6_CAEEL	No assigned EC number	0.5446	0.9649	0.0524	yes	N/A
Q9UKN7	MYO15_HUMAN	No assigned EC number	0.5675	0.9649	0.0311	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	114
cd01387	677	cd01387, MYSc_type_XV, Myosin motor domain, type X	3e-51
smart00242	677	smart00242, MYSc, Myosin	6e-51
cd00124	679	cd00124, MYSc, Myosin motor domain	9e-48
COG5022	1463	COG5022, COG5022, Myosin heavy chain [Cytoskeleton	4e-44
cd01384	674	cd01384, MYSc_type_XI, Myosin motor domain, plant-	7e-44
cd01378	674	cd01378, MYSc_type_I, Myosin motor domain, type I	1e-42
pfam00063	679	pfam00063, Myosin_head, Myosin head (motor domain)	4e-42
cd01381	671	cd01381, MYSc_type_VII, Myosin motor domain, type	4e-42
cd01377	693	cd01377, MYSc_type_II, Myosin motor domain, type I	3e-40
cd01380	691	cd01380, MYSc_type_V, Myosin motor domain, type V	4e-40
cd01382	717	cd01382, MYSc_type_VI, Myosin motor domain, type V	3e-39
cd01383	677	cd01383, MYSc_type_VIII, Myosin motor domain, plan	2e-33
cd01385	692	cd01385, MYSc_type_IX, Myosin motor domain, type I	2e-30
cd01379	653	cd01379, MYSc_type_III, Myosin motor domain, type	7e-30
PTZ00014	821	PTZ00014, PTZ00014, myosin-A; Provisional	1e-28
cd01386	767	cd01386, MYSc_type_XVIII, Myosin motor domain, typ	6e-14
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	1e-08
TIGR01967	1283	TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H	4e-04
PRK11131	1294	PRK11131, PRK11131, ATP-dependent RNA helicase Hrp	0.002

>gnl|CDD|238683 cd01387, MYSc_type_XV, Myosin motor domain, type XV myosins

 Score =  170 bits (433), Expect = 3e-51
 Identities = 68/114 (59%), Positives = 92/114 (80%), Gaps = 1/114 (0%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTK 59
           M+ +YG + V++Y G+ LG   PHLFAI + A++ +  +  NQ V+ISGESGSGKTE TK
Sbjct: 46  MFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATK 105

Query: 60  LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK 113
           L+++YLAA+N+  S +ITEQILEA+PLLE+FGNAKTVRNDNSSRFGKF+++  +
Sbjct: 106 LILRYLAAMNQGGSAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE 159

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|214580 smart00242, MYSc, Myosin

 Score =  170 bits (432), Expect = 6e-51
 Identities = 60/113 (53%), Positives = 84/113 (74%), Gaps = 3/113 (2%)

Query: 5   YGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVMQ 63
           Y  +++KKY G+  G L PH+FAI   AY  +     NQ ++ISGESG+GKTE TK +MQ
Sbjct: 55  YTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQ 114

Query: 64  YLAAVNKSPS--NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           YLA+V+ S +    + +QILE++P+LE+FGNAKT+RN+NSSRFGKF+++HF  
Sbjct: 115 YLASVSGSNTEVGSVEDQILESNPILEAFGNAKTLRNNNSSRFGKFIEIHFDA 167

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin. Length = 677

>gnl|CDD|238071 cd00124, MYSc, Myosin motor domain

 Score =  161 bits (409), Expect = 9e-48
 Identities = 59/109 (54%), Positives = 80/109 (73%), Gaps = 1/109 (0%)

Query: 5   YGLDMVKKYEGQILGTLSPHLFAIGSAAYSAL-ATSGNQVVVISGESGSGKTECTKLVMQ 63
           YG + ++KY G+    L PH+FAI   AY  +     NQ ++ISGESG+GKTE TKL+M+
Sbjct: 49  YGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMK 108

Query: 64  YLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           YLA++  S    I E+IL A+P+LE+FGNAKTVRN+NSSRFGKF+++ F
Sbjct: 109 YLASLAGSNDTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQF 157

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 679

>gnl|CDD|227355 COG5022, COG5022, Myosin heavy chain [Cytoskeleton]

 Score =  152 bits (385), Expect = 4e-44
 Identities = 59/116 (50%), Positives = 81/116 (69%), Gaps = 4/116 (3%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y  D+++ Y G+    L PH+FAI   AY  L +   NQ ++ISGESG+GKTE  K +
Sbjct: 113 GIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKRI 172

Query: 62  MQYLAAVNKSPSNLIT---EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           MQYLA+V  S +  I+   +QIL  +P+LE+FGNAKTVRNDNSSRFGK++++ F E
Sbjct: 173 MQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDE 228

Length = 1463

>gnl|CDD|238680 cd01384, MYSc_type_XI, Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

 Score =  150 bits (381), Expect = 7e-44
 Identities = 58/115 (50%), Positives = 87/115 (75%), Gaps = 4/115 (3%)

Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y + M+++Y+G  LG LSPH+FAI  AAY A+   G +Q +++SGESG+GKTE TK++M
Sbjct: 50  LYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETTKMLM 109

Query: 63  QYLAAVNKSPSNL---ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YLA +          + +Q+LE++P+LE+FGNAKTVRN+NSSRFGKF+++ F +
Sbjct: 110 RYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDD 164

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|238674 cd01378, MYSc_type_I, Myosin motor domain, type I myosins

 Score =  147 bits (373), Expect = 1e-42
 Identities = 51/113 (45%), Positives = 79/113 (69%), Gaps = 3/113 (2%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y  + ++ Y+G+    L PH++A+   AY ++ +   NQ V+ISGESG+GKTE  K +
Sbjct: 47  PIYTDETIELYKGKSRYELPPHIYALADNAYRSMKSENENQCVIISGESGAGKTEAAKKI 106

Query: 62  MQYLAAV--NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           MQY+AAV         + + IL+++PLLE+FGNAKT+RN+NSSRFGK++++ F
Sbjct: 107 MQYIAAVSGGGQKVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQF 159

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 674

>gnl|CDD|215687 pfam00063, Myosin_head, Myosin head (motor domain)

 Score =  145 bits (369), Expect = 4e-42
 Identities = 57/114 (50%), Positives = 80/114 (70%), Gaps = 4/114 (3%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLV 61
            +Y  + + +Y G+  G L PH+FA+   AY   L    NQ +VISGESG+GKTE TK +
Sbjct: 46  PIYTEEPIGEYRGKRRGELPPHIFALADRAYRHMLRDKENQCIVISGESGAGKTENTKKL 105

Query: 62  MQYLAAV---NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           MQYLA+V     S    + +QIL+++P+LE+FGNAKT+RN+NSSRFGKF+++ F
Sbjct: 106 MQYLASVSGSTPSAVGPLEDQILQSNPILEAFGNAKTLRNNNSSRFGKFIEIQF 159

Length = 679

>gnl|CDD|238677 cd01381, MYSc_type_VII, Myosin motor domain, type VII myosins

 Score =  145 bits (368), Expect = 4e-42
 Identities = 61/112 (54%), Positives = 85/112 (75%), Gaps = 2/112 (1%)

Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y  D +K Y+ + +G L PH+FAI   AY+ +     NQ ++ISGESG+GKTE TKL++
Sbjct: 48  IYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCIIISGESGAGKTESTKLIL 107

Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           QYLAA++   S  I +QILEA+P+LE+FGNAKT+RNDNSSRFGK++ +HF +
Sbjct: 108 QYLAAISGKHS-WIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNK 158

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 671

>gnl|CDD|238673 cd01377, MYSc_type_II, Myosin motor domain, type II myosins

 Score =  140 bits (355), Expect = 3e-40
 Identities = 57/118 (48%), Positives = 81/118 (68%), Gaps = 10/118 (8%)

Query: 5   YGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVMQ 63
           Y  ++V+ Y G+    + PH+FAI   AY ++     NQ ++I+GESG+GKTE TK V+Q
Sbjct: 54  YTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQ 113

Query: 64  YLAAV---------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           YLA+V         +      + +QIL+A+P+LE+FGNAKTVRNDNSSRFGKF+++HF
Sbjct: 114 YLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHF 171

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 693

>gnl|CDD|238676 cd01380, MYSc_type_V, Myosin motor domain, type V myosins

 Score =  140 bits (355), Expect = 4e-40
 Identities = 53/118 (44%), Positives = 79/118 (66%), Gaps = 6/118 (5%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLV 61
            +YG ++++ Y GQ  G L PH+FAI   AY  +     NQ +++SGESG+GKT   K +
Sbjct: 47  PIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYI 106

Query: 62  MQYLAAVNKSPSNL-----ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           M+Y A+V  S S       + E++L ++P++E+FGNAKT RNDNSSRFGK++Q+ F +
Sbjct: 107 MRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDK 164

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 691

>gnl|CDD|238678 cd01382, MYSc_type_VI, Myosin motor domain, type VI myosins

 Score =  137 bits (348), Expect = 3e-39
 Identities = 60/113 (53%), Positives = 83/113 (73%), Gaps = 2/113 (1%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y  D +KKY+G+ LGTL PH+FAI   AY  +     +Q +++SGESG+GKTE TK V
Sbjct: 52  KLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFV 111

Query: 62  MQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           ++YL   +      I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 112 LRYLTE-SYGSGQDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 163

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 717

>gnl|CDD|238679 cd01383, MYSc_type_VIII, Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

 Score =  121 bits (305), Expect = 2e-33
 Identities = 54/112 (48%), Positives = 77/112 (68%), Gaps = 5/112 (4%)

Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +YG D ++ Y  +     SPH++AI   AY+ +     NQ ++ISGESG+GKTE  K+ M
Sbjct: 56  LYGNDYIEAYRKKSND--SPHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAM 113

Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           QYLA++     + I  +IL+ +P+LE+FGNAKT RNDNSSRFGK +++HF E
Sbjct: 114 QYLASLGGG--SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSE 163

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 677

>gnl|CDD|238681 cd01385, MYSc_type_IX, Myosin motor domain, type IX myosins

 Score =  112 bits (282), Expect = 2e-30
 Identities = 60/115 (52%), Positives = 78/115 (67%), Gaps = 4/115 (3%)

Query: 4   MYGLDMVKKYEGQ-ILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLV 61
           +Y    V+ YE Q  LG L PH+FAI   AY + L    NQ +VISGESGSGKTE T  +
Sbjct: 55  IYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFL 114

Query: 62  MQYLAAVN-KSPSNLITEQ-ILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           + +L A++ K  +    EQ IL A P+LE+FGNAKT  N+NSSRFGKF+QV+++E
Sbjct: 115 IHHLTALSQKGYAGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRE 169

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 692

>gnl|CDD|238675 cd01379, MYSc_type_III, Myosin motor domain, type III myosins

 Score =  111 bits (279), Expect = 7e-30
 Identities = 52/110 (47%), Positives = 75/110 (68%), Gaps = 1/110 (0%)

Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y     + Y GQ   +  PH+FAI  AAY +L T + +Q +VISGESGSGKTE   L++
Sbjct: 48  LYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLV 107

Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           Q L  + K+ +  + E+IL+ + L+E+FGNA+T  NDNSSRFGK+L++ F
Sbjct: 108 QQLTVLGKANNRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMKF 157

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 653

>gnl|CDD|240229 PTZ00014, PTZ00014, myosin-A; Provisional

 Score =  107 bits (270), Expect = 1e-28
 Identities = 44/92 (47%), Positives = 63/92 (68%), Gaps = 2/92 (2%)

Query: 21  LSPHLFAIGSAAYSAL-ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNL-ITE 78
           L PH+F     A   L     +Q +++SGESG+GKTE TK +M+Y A+      +L I  
Sbjct: 162 LPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGNMDLKIQN 221

Query: 79  QILEASPLLESFGNAKTVRNDNSSRFGKFLQV 110
            I+ A+P+LE+FGNAKT+RN+NSSRFG+F+Q+
Sbjct: 222 AIMAANPVLEAFGNAKTIRNNNSSRFGRFMQL 253

Length = 821

>gnl|CDD|238682 cd01386, MYSc_type_XVIII, Myosin motor domain, type XVIII myosins

 Score = 66.0 bits (161), Expect = 6e-14
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 21  LSPHLFAIGSAAYSA-LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLIT-E 78
           + PH++++   AY A L T  +Q ++  G SG+GKT   K  ++YLA    S    ++ E
Sbjct: 65  MPPHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVE 124

Query: 79  QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           ++     +LE+FGN  T  N N++RF + L + F
Sbjct: 125 KVRALFTILEAFGNVSTALNGNATRFTQILSLDF 158

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the filament (power stroke). Release of ADP completes the cycle. Length = 767

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 18/90 (20%), Positives = 33/90 (36%), Gaps = 6/90 (6%)

Query: 25  LFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEAS 84
           +F        +     N  +   G++GSGKT  T    +  A +           +++  
Sbjct: 8   VFRDVGPLLQSALDGYNVCIFAYGQTGSGKT-YTMEGKREGAGIIPR----TVTDVIDLM 62

Query: 85  PLLESFG-NAKTVRNDNSSRFGKFLQVHFK 113
               +    A T  N++SSR     ++HF 
Sbjct: 63  DKGNANRTTAATAMNEHSSRSHSVFRIHFG 92

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA

 Score = 38.2 bits (89), Expect = 4e-04
 Identities = 13/19 (68%), Positives = 17/19 (89%)

Query: 37 ATSGNQVVVISGESGSGKT 55
          A + NQVV+I+GE+GSGKT
Sbjct: 78 AIAENQVVIIAGETGSGKT 96

This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283

>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 11/19 (57%), Positives = 16/19 (84%)

Query: 37  ATSGNQVVVISGESGSGKT 55
           A   +QVV+++GE+GSGKT
Sbjct: 85  AIRDHQVVIVAGETGSGKT 103

Length = 1294

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
PTZ00014	821	myosin-A; Provisional	100.0
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	100.0
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	100.0
COG5022	1463	Myosin heavy chain [Cytoskeleton]	100.0
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	100.0
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	100.0
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	100.0
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	100.0
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	100.0
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	100.0
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	100.0
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	100.0
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	100.0
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	100.0
KOG0161|consensus	1930		100.0
KOG0164|consensus	1001		100.0
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	100.0
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	100.0
KOG0163|consensus	1259		100.0
KOG0162|consensus	1106		99.97
KOG0160|consensus	862		99.92
KOG4229|consensus	1062		99.89
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	98.79
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	98.71
COG3842	352	PotA ABC-type spermidine/putrescine transport syst	98.7
COG1120	258	FepC ABC-type cobalamin/Fe3+-siderophores transpor	98.66
COG1124	252	DppF ABC-type dipeptide/oligopeptide/nickel transp	98.62
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	98.61
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	98.59
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	98.58
COG4608	268	AppF ABC-type oligopeptide transport system, ATPas	98.58
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	98.57
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	98.57
COG1121	254	ZnuC ABC-type Mn/Zn transport systems, ATPase comp	98.56
PRK15177	213	Vi polysaccharide export ATP-binding protein VexC;	98.55
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	98.55
cd03259	213	ABC_Carb_Solutes_like ABC Carbohydrate and Solute	98.55
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	98.55
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	98.54
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	98.53
cd03262	213	ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-	98.52
cd03235	213	ABC_Metallic_Cations ABC component of the metal-ty	98.52
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	98.52
cd03293	220	ABC_NrtD_SsuB_transporters NrtD and SsuB are the A	98.52
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	98.52
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	98.52
cd03219	236	ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans	98.52
COG4555	245	NatA ABC-type Na+ transport system, ATPase compone	98.52
TIGR02315	243	ABC_phnC phosphonate ABC transporter, ATP-binding	98.52
cd03257	228	ABC_NikE_OppD_transporters The ABC transporter sub	98.52
cd03269	210	ABC_putative_ATPase This subfamily is involved in	98.51
COG4619	223	ABC-type uncharacterized transport system, ATPase	98.51
cd03258	233	ABC_MetN_methionine_transporter MetN (also known a	98.51
cd03218	232	ABC_YhbG The ABC transporters belonging to the Yhb	98.51
cd03224	222	ABC_TM1139_LivF_branched LivF (TM1139) is part of	98.51
cd03260	227	ABC_PstB_phosphate_transporter Phosphate uptake is	98.51
TIGR02211	221	LolD_lipo_ex lipoprotein releasing system, ATP-bin	98.5
cd03256	241	ABC_PhnC_transporter ABC-type phosphate/phosphonat	98.5
COG1118	345	CysA ABC-type sulfate/molybdate transport systems,	98.5
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	98.5
PRK10584	228	putative ABC transporter ATP-binding protein YbbA;	98.5
cd03263	220	ABC_subfamily_A The ABCA subfamily mediates the tr	98.5
PRK11248	255	tauB taurine transporter ATP-binding subunit; Prov	98.49
cd03301	213	ABC_MalK_N The N-terminal ATPase domain of the mal	98.49
cd03296	239	ABC_CysA_sulfate_importer Part of the ABC transpor	98.49
TIGR01188	302	drrA daunorubicin resistance ABC transporter ATP-b	98.49
COG4525	259	TauB ABC-type taurine transport system, ATPase com	98.49
TIGR03410	230	urea_trans_UrtE urea ABC transporter, ATP-binding	98.49
cd03223	166	ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass	98.49
PRK11629	233	lolD lipoprotein transporter ATP-binding subunit;	98.48
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	98.48
TIGR03864	236	PQQ_ABC_ATP ABC transporter, ATP-binding subunit,	98.48
PRK10247	225	putative ABC transporter ATP-binding protein YbbL;	98.48
PRK13541	195	cytochrome c biogenesis protein CcmA; Provisional	98.48
TIGR01184	230	ntrCD nitrate transport ATP-binding subunits C and	98.48
cd03298	211	ABC_ThiQ_thiamine_transporter ABC-type thiamine tr	98.48
cd03266	218	ABC_NatA_sodium_exporter NatA is the ATPase compon	98.48
PRK13538	204	cytochrome c biogenesis protein CcmA; Provisional	98.48
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	98.47
PRK10908	222	cell division protein FtsE; Provisional	98.47
cd03216	163	ABC_Carb_Monos_I This family represents the domain	98.47
TIGR02324	224	CP_lyasePhnL phosphonate C-P lyase system protein	98.47
PRK11247	257	ssuB aliphatic sulfonates transport ATP-binding su	98.47
PF00005	137	ABC_tran: ABC transporter This structure is on hol	98.47
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	98.46
PRK13540	200	cytochrome c biogenesis protein CcmA; Provisional	98.46
PRK13539	207	cytochrome c biogenesis protein CcmA; Provisional	98.46
cd03268	208	ABC_BcrA_bacitracin_resist The BcrA subfamily repr	98.46
cd03246	173	ABCC_Protease_Secretion This family represents the	98.46
cd03295	242	ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin	98.46
COG1131	293	CcmA ABC-type multidrug transport system, ATPase c	98.45
cd03228	171	ABCC_MRP_Like The MRP (Mutidrug Resistance Protein	98.45
PRK14250	241	phosphate ABC transporter ATP-binding protein; Pro	98.45
PRK10895	241	lipopolysaccharide ABC transporter ATP-binding pro	98.45
cd03254	229	ABCC_Glucan_exporter_like Glucan exporter ATP-bind	98.45
TIGR01288	303	nodI ATP-binding ABC transporter family nodulation	98.45
cd03231	201	ABC_CcmA_heme_exporter CcmA, the ATP-binding compo	98.45
PRK09493	240	glnQ glutamine ABC transporter ATP-binding protein	98.44
cd03247	178	ABCC_cytochrome_bd The CYD subfamily implicated in	98.44
PRK13645	289	cbiO cobalt transporter ATP-binding subunit; Provi	98.44
COG1127	263	Ttg2A ABC-type transport system involved in resist	98.44
cd03230	173	ABC_DR_subfamily_A This family of ATP-binding prot	98.44
TIGR01189	198	ccmA heme ABC exporter, ATP-binding protein CcmA.	98.44
cd03215	182	ABC_Carb_Monos_II This family represents domain II	98.44
PRK13537	306	nodulation ABC transporter NodI; Provisional	98.44
PRK11124	242	artP arginine transporter ATP-binding subunit; Pro	98.44
PRK13638	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.43
cd03267	236	ABC_NatA_like Similar in sequence to NatA, this is	98.43
cd03249	238	ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6)	98.43
cd03250	204	ABCC_MRP_domain1 Domain 1 of the ABC subfamily C.	98.43
PRK15112	267	antimicrobial peptide ABC system ATP-binding prote	98.43
COG1117	253	PstB ABC-type phosphate transport system, ATPase c	98.43
cd03294	269	ABC_Pro_Gly_Bertaine This family comprises the gly	98.43
TIGR02323	253	CP_lyasePhnK phosphonate C-P lyase system protein	98.43
TIGR03005	252	ectoine_ehuA ectoine/hydroxyectoine ABC transporte	98.43
PRK11701	258	phnK phosphonate C-P lyase system protein PhnK; Pr	98.43
TIGR02769	265	nickel_nikE nickel import ATP-binding protein NikE	98.43
PRK10771	232	thiQ thiamine transporter ATP-binding subunit; Pro	98.43
cd03214	180	ABC_Iron-Siderophores_B12_Hemin ABC transporters,	98.43
PRK15056	272	manganese/iron transporter ATP-binding protein; Pr	98.43
PRK13649	280	cbiO cobalt transporter ATP-binding subunit; Provi	98.42
PRK13548	258	hmuV hemin importer ATP-binding subunit; Provision	98.42
cd03245	220	ABCC_bacteriocin_exporters ABC-type bacteriocin ex	98.42
cd03252	237	ABCC_Hemolysin The ABC-transporter hemolysin B is	98.42
TIGR03411	242	urea_trans_UrtD urea ABC transporter, ATP-binding	98.42
PRK13543	214	cytochrome c biogenesis protein CcmA; Provisional	98.42
COG2884	223	FtsE Predicted ATPase involved in cell division [C	98.42
cd03251	234	ABCC_MsbA MsbA is an essential ABC transporter, cl	98.42
TIGR01277	213	thiQ thiamine ABC transporter, ATP-binding protein	98.42
PRK13646	286	cbiO cobalt transporter ATP-binding subunit; Provi	98.42
PRK11264	250	putative amino-acid ABC transporter ATP-binding pr	98.42
cd03369	207	ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty	98.42
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	98.41
PRK09544	251	znuC high-affinity zinc transporter ATPase; Review	98.41
PRK11831	269	putative ABC transporter ATP-binding protein YrbF;	98.41
COG0411	250	LivG ABC-type branched-chain amino acid transport	98.41
PRK11300	255	livG leucine/isoleucine/valine transporter ATP-bin	98.41
PRK13648	269	cbiO cobalt transporter ATP-binding subunit; Provi	98.41
cd03290	218	ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec	98.41
TIGR03740	223	galliderm_ABC gallidermin-class lantibiotic protec	98.41
PRK13632	271	cbiO cobalt transporter ATP-binding subunit; Provi	98.41
cd03248	226	ABCC_TAP TAP, the Transporter Associated with Anti	98.41
COG3638	258	ABC-type phosphate/phosphonate transport system, A	98.41
PRK10575	265	iron-hydroxamate transporter ATP-binding subunit;	98.4
cd03244	221	ABCC_MRP_domain2 Domain 2 of the ABC subfamily C.	98.4
PRK13637	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.4
PRK13536	340	nodulation factor exporter subunit NodI; Provision	98.4
PRK13639	275	cbiO cobalt transporter ATP-binding subunit; Provi	98.4
PRK10851	353	sulfate/thiosulfate transporter subunit; Provision	98.4
COG1134	249	TagH ABC-type polysaccharide/polyol phosphate tran	98.4
TIGR02770	230	nickel_nikD nickel import ATP-binding protein NikD	98.4
PRK11650	356	ugpC glycerol-3-phosphate transporter ATP-binding	98.4
TIGR00972	247	3a0107s01c2 phosphate ABC transporter, ATP-binding	98.4
PRK13641	287	cbiO cobalt transporter ATP-binding subunit; Provi	98.39
cd03253	236	ABCC_ATM1_transporter ATM1 is an ABC transporter t	98.39
PRK11614	237	livF leucine/isoleucine/valine transporter ATP-bin	98.39
PRK13644	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.39
PRK11308	327	dppF dipeptide transporter ATP-binding subunit; Pr	98.39
PRK13650	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.39
PRK11153	343	metN DL-methionine transporter ATP-binding subunit	98.39
cd03220	224	ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo	98.39
PRK11432	351	fbpC ferric transporter ATP-binding subunit; Provi	98.38
PRK13647	274	cbiO cobalt transporter ATP-binding subunit; Provi	98.38
TIGR03265	353	PhnT2 putative 2-aminoethylphosphonate ABC transpo	98.38
PRK13635	279	cbiO cobalt transporter ATP-binding subunit; Provi	98.38
PRK13652	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.38
PRK13651	305	cobalt transporter ATP-binding subunit; Provisiona	98.38
COG1123	539	ATPase components of various ABC-type transport sy	98.38
cd03237	246	ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o	98.38
PRK15079	331	oligopeptide ABC transporter ATP-binding protein O	98.37
TIGR03522	301	GldA_ABC_ATP gliding motility-associated ABC trans	98.37
PRK10619	257	histidine/lysine/arginine/ornithine transporter su	98.37
PRK11000	369	maltose/maltodextrin transporter ATP-binding prote	98.37
TIGR01978	243	sufC FeS assembly ATPase SufC. SufC is part of the	98.37
PRK13546	264	teichoic acids export protein ATP-binding subunit;	98.37
PRK11231	255	fecE iron-dicitrate transporter ATP-binding subuni	98.37
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	98.37
COG4133	209	CcmA ABC-type transport system involved in cytochr	98.37
PRK10253	265	iron-enterobactin transporter ATP-binding protein;	98.37
cd03234	226	ABCG_White The White subfamily represents ABC tran	98.36
PRK11144	352	modC molybdate transporter ATP-binding protein; Pr	98.36
TIGR00968	237	3a0106s01 sulfate ABC transporter, ATP-binding pro	98.36
cd03297	214	ABC_ModC_molybdenum_transporter ModC is an ABC-typ	98.36
TIGR03873	256	F420-0_ABC_ATP proposed F420-0 ABC transporter, AT	98.36
PRK13643	288	cbiO cobalt transporter ATP-binding subunit; Provi	98.36
TIGR03771	223	anch_rpt_ABC anchored repeat-type ABC transporter,	98.36
PRK13631	320	cbiO cobalt transporter ATP-binding subunit; Provi	98.36
cd03236	255	ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o	98.35
PRK09452	375	potA putrescine/spermidine ABC transporter ATPase	98.35
TIGR02314	343	ABC_MetN D-methionine ABC transporter, ATP-binding	98.35
cd03233	202	ABC_PDR_domain1 The pleiotropic drug resistance (P	98.35
COG4559	259	ABC-type hemin transport system, ATPase component	98.35
PRK10419	268	nikE nickel transporter ATP-binding protein NikE;	98.35
TIGR02142	354	modC_ABC molybdenum ABC transporter, ATP-binding p	98.35
PRK13634	290	cbiO cobalt transporter ATP-binding subunit; Provi	98.34
PRK13636	283	cbiO cobalt transporter ATP-binding subunit; Provi	98.33
COG0410	237	LivF ABC-type branched-chain amino acid transport	98.33
cd03213	194	ABCG_EPDR ABCG transporters are involved in eye pi	98.33
TIGR02868	529	CydC thiol reductant ABC exporter, CydC subunit. T	98.33
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	98.33
PRK10418	254	nikD nickel transporter ATP-binding protein NikD;	98.33
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	98.33
PRK10938	490	putative molybdenum transport ATP-binding protein	98.32
cd03291	282	ABCC_CFTR1 The CFTR subfamily domain 1. The cystic	98.32
PRK13633	280	cobalt transporter ATP-binding subunit; Provisiona	98.32
cd03288	257	ABCC_SUR2 The SUR domain 2. The sulfonylurea recep	98.32
PRK14242	253	phosphate transporter ATP-binding protein; Provisi	98.31
PRK11607	377	potG putrescine transporter ATP-binding subunit; P	98.31
PRK13547	272	hmuV hemin importer ATP-binding subunit; Provision	98.31
PRK09536	402	btuD corrinoid ABC transporter ATPase; Reviewed	98.31
TIGR02982	220	heterocyst_DevA ABC exporter ATP-binding subunit,	98.31
PRK13642	277	cbiO cobalt transporter ATP-binding subunit; Provi	98.3
PRK14267	253	phosphate ABC transporter ATP-binding protein; Pro	98.3
PRK13640	282	cbiO cobalt transporter ATP-binding subunit; Provi	98.3
cd03299	235	ABC_ModC_like Archeal protein closely related to M	98.3
PRK14235	267	phosphate transporter ATP-binding protein; Provisi	98.3
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	98.29
COG2274	709	SunT ABC-type bacteriocin/lantibiotic exporters, c	98.29
cd03300	232	ABC_PotA_N PotA is an ABC-type transporter and the	98.29
PRK14238	271	phosphate transporter ATP-binding protein; Provisi	98.29
PRK10744	260	pstB phosphate transporter ATP-binding protein; Pr	98.29
PRK14241	258	phosphate transporter ATP-binding protein; Provisi	98.28
PRK14248	268	phosphate ABC transporter ATP-binding protein; Pro	98.28
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.28
PRK11176	582	lipid transporter ATP-binding/permease protein; Pr	98.28
TIGR03258	362	PhnT 2-aminoethylphosphonate ABC transport system,	98.27
PRK14259	269	phosphate ABC transporter ATP-binding protein; Pro	98.27
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.27
PRK14262	250	phosphate ABC transporter ATP-binding protein; Pro	98.27
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.27
CHL00131	252	ycf16 sulfate ABC transporter protein; Validated	98.26
PRK14247	250	phosphate ABC transporter ATP-binding protein; Pro	98.26
PRK09700	510	D-allose transporter ATP-binding protein; Provisio	98.26
PRK14251	251	phosphate ABC transporter ATP-binding protein; Pro	98.26
PRK09473	330	oppD oligopeptide transporter ATP-binding componen	98.26
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.26
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.26
PRK14273	254	phosphate ABC transporter ATP-binding protein; Pro	98.26
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.25
PRK14246	257	phosphate ABC transporter ATP-binding protein; Pro	98.25
PRK11022	326	dppD dipeptide transporter ATP-binding subunit; Pr	98.25
PRK14237	267	phosphate transporter ATP-binding protein; Provisi	98.25
PRK15093	330	antimicrobial peptide ABC transporter ATP-binding	98.25
cd03217	200	ABC_FeS_Assembly ABC-type transport system involve	98.25
PRK14270	251	phosphate ABC transporter ATP-binding protein; Pro	98.24
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.24
cd03232	192	ABC_PDR_domain2 The pleiotropic drug resistance-li	98.24
PRK09580	248	sufC cysteine desulfurase ATPase component; Review	98.23
PRK14268	258	phosphate ABC transporter ATP-binding protein; Pro	98.23
COG4107	258	PhnK ABC-type phosphonate transport system, ATPase	98.23
PRK13409	590	putative ATPase RIL; Provisional	98.23
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	98.23
TIGR03797	686	NHPM_micro_ABC2 NHPM bacteriocin system ABC transp	98.23
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.22
cd00267	157	ABC_ATPase ABC (ATP-binding cassette) transporter	98.22
PRK09984	262	phosphonate/organophosphate ester transporter subu	98.22
PRK10261	623	glutathione transporter ATP-binding protein; Provi	98.22
PRK14269	246	phosphate ABC transporter ATP-binding protein; Pro	98.22
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.21
PRK14240	250	phosphate transporter ATP-binding protein; Provisi	98.21
PRK14253	249	phosphate ABC transporter ATP-binding protein; Pro	98.21
COG0444	316	DppD ABC-type dipeptide/oligopeptide/nickel transp	98.21
PRK10636	638	putative ABC transporter ATP-binding protein; Prov	98.21
PRK14274	259	phosphate ABC transporter ATP-binding protein; Pro	98.21
PRK14249	251	phosphate ABC transporter ATP-binding protein; Pro	98.21
PRK14263	261	phosphate ABC transporter ATP-binding protein; Pro	98.21
PRK14244	251	phosphate ABC transporter ATP-binding protein; Pro	98.21
COG4167	267	SapF ABC-type antimicrobial peptide transport syst	98.2
PRK11147	635	ABC transporter ATPase component; Reviewed	98.2
PRK10790	592	putative multidrug transporter membrane\ATP-bindin	98.2
PRK14254	285	phosphate ABC transporter ATP-binding protein; Pro	98.2
TIGR02204	576	MsbA_rel ABC transporter, permease/ATP-binding pro	98.2
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	98.2
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.2
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.2
PRK14272	252	phosphate ABC transporter ATP-binding protein; Pro	98.2
PRK11288	501	araG L-arabinose transporter ATP-binding protein;	98.19
COG4152	300	ABC-type uncharacterized transport system, ATPase	98.19
TIGR03796	710	NHPM_micro_ABC1 NHPM bacteriocin system ABC transp	98.18
TIGR03269	520	met_CoM_red_A2 methyl coenzyme M reductase system,	98.18
TIGR01193	708	bacteriocin_ABC ABC-type bacteriocin transporter.	98.18
PRK14236	272	phosphate transporter ATP-binding protein; Provisi	98.18
PRK14243	264	phosphate transporter ATP-binding protein; Provisi	98.18
PRK03695	248	vitamin B12-transporter ATPase; Provisional	98.18
PRK10762	501	D-ribose transporter ATP binding protein; Provisio	98.17
TIGR02857	529	CydD thiol reductant ABC exporter, CydD subunit. U	98.17
PRK15064	530	ABC transporter ATP-binding protein; Provisional	98.17
PRK14256	252	phosphate ABC transporter ATP-binding protein; Pro	98.17
PRK15439	510	autoinducer 2 ABC transporter ATP-binding protein	98.17
TIGR00958	711	3a01208 Conjugate Transporter-2 (CT2) Family prote	98.17
PRK14271	276	phosphate ABC transporter ATP-binding protein; Pro	98.17
PRK14252	265	phosphate ABC transporter ATP-binding protein; Pro	98.16
TIGR02203	571	MsbA_lipidA lipid A export permease/ATP-binding pr	98.16
COG1122	235	CbiO ABC-type cobalt transport system, ATPase comp	98.16
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.16
PRK11147	635	ABC transporter ATPase component; Reviewed	98.16
PRK14275	286	phosphate ABC transporter ATP-binding protein; Pro	98.16
COG4586	325	ABC-type uncharacterized transport system, ATPase	98.16
PRK11819	556	putative ABC transporter ATP-binding protein; Revi	98.15
PRK14260	259	phosphate ABC transporter ATP-binding protein; Pro	98.15
PRK13657	588	cyclic beta-1,2-glucan ABC transporter; Provisiona	98.15
PRK10522	547	multidrug transporter membrane component/ATP-bindi	98.15
PRK10789	569	putative multidrug transporter membrane\ATP-bindin	98.14
PRK10982	491	galactose/methyl galaxtoside transporter ATP-bindi	98.14
TIGR03719	552	ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa	98.14
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	98.14
PRK14239	252	phosphate transporter ATP-binding protein; Provisi	98.14
TIGR03375	694	type_I_sec_LssB type I secretion system ATPase, Ls	98.14
PRK14264	305	phosphate ABC transporter ATP-binding protein; Pro	98.14
PRK11174	588	cysteine/glutathione ABC transporter membrane/ATP-	98.14
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.14
PRK14265	274	phosphate ABC transporter ATP-binding protein; Pro	98.13
PRK14255	252	phosphate ABC transporter ATP-binding protein; Pro	98.13
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	98.13
PRK11160	574	cysteine/glutathione ABC transporter membrane/ATP-	98.12
PRK14258	261	phosphate ABC transporter ATP-binding protein; Pro	98.12
PRK14245	250	phosphate ABC transporter ATP-binding protein; Pro	98.12
cd03289	275	ABCC_CFTR2 The CFTR subfamily domain 2. The cystic	98.12
PRK13549	506	xylose transporter ATP-binding subunit; Provisiona	98.12
PLN03073	718	ABC transporter F family; Provisional	98.12
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	98.11
TIGR01842	544	type_I_sec_PrtD type I secretion system ABC transp	98.11
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.1
PRK14261	253	phosphate ABC transporter ATP-binding protein; Pro	98.1
COG1129	500	MglA ABC-type sugar transport system, ATPase compo	98.1
TIGR02633	500	xylG D-xylose ABC transporter, ATP-binding protein	98.1
PRK13409	590	putative ATPase RIL; Provisional	98.09
TIGR00235	207	udk uridine kinase. Model contains a number of lon	98.08
PRK14266	250	phosphate ABC transporter ATP-binding protein; Pro	98.08
TIGR01194	555	cyc_pep_trnsptr cyclic peptide transporter. This m	98.08
COG4778	235	PhnL ABC-type phosphonate transport system, ATPase	98.08
COG1132	567	MdlB ABC-type multidrug transport system, ATPase a	98.07
PRK13545	549	tagH teichoic acids export protein ATP-binding sub	98.07
PRK10938	490	putative molybdenum transport ATP-binding protein	98.07
COG3845	501	ABC-type uncharacterized transport systems, ATPase	98.07
COG1119	257	ModF ABC-type molybdenum transport system, ATPase	98.07
COG4181	228	Predicted ABC-type transport system involved in ly	98.07
TIGR01192	585	chvA glucan exporter ATP-binding protein. This mod	98.07
COG0488	530	Uup ATPase components of ABC transporters with dup	98.05
COG1135	339	AbcC ABC-type metal ion transport system, ATPase c	98.04
PRK15134	529	microcin C ABC transporter ATP-binding protein Yej	98.04
COG4987	573	CydC ABC-type transport system involved in cytochr	98.04
TIGR00954	659	3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA	98.03
TIGR01846	694	type_I_sec_HlyB type I secretion system ABC transp	98.02
COG4615	546	PvdE ABC-type siderophore export system, fused ATP	98.0
COG4136	213	ABC-type uncharacterized transport system, ATPase	98.0
KOG0058|consensus	716		98.0
COG4604	252	CeuD ABC-type enterochelin transport system, ATPas	97.99
COG4988	559	CydD ABC-type transport system involved in cytochr	97.99
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.99
COG4618	580	ArpD ABC-type protease/lipase transport system, AT	97.97
COG0396	251	sufC Cysteine desulfurase activator ATPase [Posttr	97.97
TIGR03238	504	dnd_assoc_3 dnd system-associated protein 3. cereu	97.96
cd03270	226	ABC_UvrA_I The excision repair protein UvrA domain	97.96
COG1123	539	ATPase components of various ABC-type transport sy	97.94
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.93
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.93
KOG0055|consensus	1228		97.91
PRK00300	205	gmk guanylate kinase; Provisional	97.9
PRK14257	329	phosphate ABC transporter ATP-binding protein; Pro	97.9
cd03243	202	ABC_MutS_homologs The MutS protein initiates DNA m	97.9
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.89
PRK09825	176	idnK D-gluconate kinase; Provisional	97.88
COG1137	243	YhbG ABC-type (unclassified) transport system, ATP	97.87
COG4178	604	ABC-type uncharacterized transport system, permeas	97.87
COG0488	530	Uup ATPase components of ABC transporters with dup	97.86
COG4172	534	ABC-type uncharacterized transport system, duplica	97.86
COG4161	242	ArtP ABC-type arginine transport system, ATPase co	97.85
KOG0057|consensus	591		97.85
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	97.85
cd03283	199	ABC_MutS-like MutS-like homolog in eukaryotes. The	97.85
cd03278	197	ABC_SMC_barmotin Barmotin is a tight junction-asso	97.83
PLN03073	718	ABC transporter F family; Provisional	97.82
PLN03232	1495	ABC transporter C family member; Provisional	97.82
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.81
COG1101	263	PhnK ABC-type uncharacterized transport system, AT	97.81
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.81
PLN03130	1622	ABC transporter C family member; Provisional	97.81
PRK10535	648	macrolide transporter ATP-binding /permease protei	97.8
KOG0056|consensus	790		97.8
PLN03211	659	ABC transporter G-25; Provisional	97.79
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.79
KOG0055|consensus	1228		97.79
PTZ00243	1560	ABC transporter; Provisional	97.78
TIGR01257	2272	rim_protein retinal-specific rim ABC transporter.	97.78
PRK05480	209	uridine/cytidine kinase; Provisional	97.77
PTZ00265	1466	multidrug resistance protein (mdr1); Provisional	97.77
KOG0060|consensus	659		97.77
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.75
PLN03232	1495	ABC transporter C family member; Provisional	97.74
KOG0927|consensus	614		97.74
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	97.73
PLN03130	1622	ABC transporter C family member; Provisional	97.72
TIGR02788	308	VirB11 P-type DNA transfer ATPase VirB11. The VirB	97.72
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	97.71
cd03272	243	ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein	97.71
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.7
PF00485	194	PRK: Phosphoribulokinase / Uridine kinase family;	97.7
TIGR00957	1522	MRP_assoc_pro multi drug resistance-associated pro	97.69
cd03273	251	ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein	97.67
PTZ00243	1560	ABC transporter; Provisional	97.65
smart00382	148	AAA ATPases associated with a variety of cellular	97.63
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.58
PRK07261	171	topology modulation protein; Provisional	97.58
TIGR01271	1490	CFTR_protein cystic fibrosis transmembrane conduct	97.57
TIGR01187	325	potA spermidine/putrescine ABC transporter ATP-bin	97.56
COG4598	256	HisP ABC-type histidine transport system, ATPase c	97.56
PRK08118	167	topology modulation protein; Reviewed	97.56
KOG0064|consensus	728		97.55
cd03279	213	ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex	97.54
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	97.54
TIGR00955	617	3a01204 The Eye Pigment Precursor Transporter (EPP	97.54
PTZ00301	210	uridine kinase; Provisional	97.53
TIGR00554	290	panK_bact pantothenate kinase, bacterial type. Sho	97.53
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	97.53
cd03280	200	ABC_MutS2 MutS2 homologs in bacteria and eukaryote	97.53
PRK08233	182	hypothetical protein; Provisional	97.52
cd03274	212	ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein	97.52
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.52
PLN03140	1470	ABC transporter G family member; Provisional	97.52
PRK00889	175	adenylylsulfate kinase; Provisional	97.52
TIGR00150	133	HI0065_YjeE ATPase, YjeE family. Members of this f	97.5
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	97.5
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.49
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.49
cd02026	273	PRK Phosphoribulokinase (PRK) is an enzyme involve	97.47
PRK13851	344	type IV secretion system protein VirB11; Provision	97.47
PF00004	132	AAA: ATPase family associated with various cellula	97.47
PRK10416	318	signal recognition particle-docking protein FtsY;	97.46
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	97.46
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.46
cd00227	175	CPT Chloramphenicol (Cm) phosphotransferase (CPT).	97.46
PRK05541	176	adenylylsulfate kinase; Provisional	97.45
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.45
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	97.43
PLN02165	334	adenylate isopentenyltransferase	97.42
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	97.4
PRK14738	206	gmk guanylate kinase; Provisional	97.39
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	97.38
TIGR00956	1394	3a01205 Pleiotropic Drug Resistance (PDR) Family p	97.38
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.36
TIGR01313	163	therm_gnt_kin carbohydrate kinase, thermoresistant	97.36
PRK06696	223	uridine kinase; Validated	97.35
PRK03846	198	adenylylsulfate kinase; Provisional	97.34
PRK14737	186	gmk guanylate kinase; Provisional	97.34
PF13401	131	AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S	97.34
PRK06762	166	hypothetical protein; Provisional	97.33
PLN02796	347	D-glycerate 3-kinase	97.33
PRK06547	172	hypothetical protein; Provisional	97.33
PRK14527	191	adenylate kinase; Provisional	97.32
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	97.31
cd03275	247	ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein	97.27
PRK06217	183	hypothetical protein; Validated	97.27
PRK05057	172	aroK shikimate kinase I; Reviewed	97.27
PLN03140	1470	ABC transporter G family member; Provisional	97.27
PRK00131	175	aroK shikimate kinase; Reviewed	97.26
TIGR02858	270	spore_III_AA stage III sporulation protein AA. Mem	97.25
COG4172	534	ABC-type uncharacterized transport system, duplica	97.24
COG4148	352	ModC ABC-type molybdate transport system, ATPase c	97.24
cd03287	222	ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS	97.23
cd02028	179	UMPK_like Uridine monophosphate kinase_like (UMPK_	97.23
COG0572	218	Udk Uridine kinase [Nucleotide transport and metab	97.23
COG1245	591	Predicted ATPase, RNase L inhibitor (RLI) homolog	97.22
cd03282	204	ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS	97.22
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	97.22
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	97.21
PF03215	519	Rad17: Rad17 cell cycle checkpoint protein	97.2
PF00625	183	Guanylate_kin: Guanylate kinase; InterPro: IPR0081	97.2
cd03271	261	ABC_UvrA_II The excision repair protein UvrA domai	97.19
PRK14530	215	adenylate kinase; Provisional	97.19
smart00534	185	MUTSac ATPase domain of DNA mismatch repair MUTS f	97.19
cd03281	213	ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS	97.18
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	97.17
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	97.17
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	97.17
COG4138	248	BtuD ABC-type cobalamin transport system, ATPase c	97.17
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	97.16
cd01120	165	RecA-like_NTPases RecA-like NTPases. This family i	97.16
KOG0059|consensus	885		97.16
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	97.16
cd02024	187	NRK1 Nicotinamide riboside kinase (NRK) is an enzy	97.16
TIGR00455	184	apsK adenylylsulfate kinase (apsK). Important resi	97.16
TIGR00101	199	ureG urease accessory protein UreG. This model rep	97.16
cd02020	147	CMPK Cytidine monophosphate kinase (CMPK) catalyze	97.16
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	97.14
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	97.14
COG4674	249	Uncharacterized ABC-type transport system, ATPase	97.14
cd03240	204	ABC_Rad50 The catalytic domains of Rad50 are simil	97.14
PRK03839	180	putative kinase; Provisional	97.13
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.13
KOG0054|consensus	1381		97.13
PF13476	202	AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V	97.13
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	97.12
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.12
PF02367	123	UPF0079: Uncharacterised P-loop hydrolase UPF0079;	97.11
KOG0061|consensus	613		97.11
cd02027	149	APSK Adenosine 5'-phosphosulfate kinase (APSK) cat	97.1
PF07728	139	AAA_5: AAA domain (dynein-related subfamily); Inte	97.08
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	97.08
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	97.08

>PTZ00014 myosin-A; Provisional

Probab=100.00  E-value=3e-36  Score=237.12  Aligned_cols=114  Identities=40%  Similarity=0.665  Sum_probs=103.8

Q ss_pred             CCCCCCHHHHHHhhcC-CCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-chhHH
Q psy7658           1 MYDMYGLDMVKKYEGQ-ILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP-SNLIT   77 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~-~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~-~~~~~   77 (114)
                      +||+|+.+++..|++. ...++|||+|++++.||++|.. ..+|+|+|+||||||||+..|.+++++....+.. ...++
T Consensus       141 ~l~~y~~~~~~~Y~~~~~~~~lpPHifavA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~~~~~ie  220 (821)
T PTZ00014        141 DLGNTTNDWIRRYRDAKDSDKLPPHVFTTARRALENLHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGNMDLKIQ  220 (821)
T ss_pred             CCCCCcHHHHHHHhCCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhccCCCcccHH
Confidence            5799999999999986 4678999999999999999874 6799999999999999999999999998765433 34689


Q ss_pred             HHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          78 EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        78 ~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      ++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       221 ~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~  257 (821)
T PTZ00014        221 NAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQLGE  257 (821)
T ss_pred             HHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEEEcC
Confidence            9999999999999999999999999999999999973

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=100.00  E-value=3.9e-36  Score=233.91  Aligned_cols=114  Identities=46%  Similarity=0.844  Sum_probs=106.0

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-----ch
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP-----SN   74 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~-----~~   74 (114)
                      +||+|+++++..|+++...++|||+|++++.||+.|. ...+|+|+|+||||||||+..|.++.++...++..     ..
T Consensus        45 ~l~~Y~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~  124 (691)
T cd01380          45 RLPIYGEEIIQAYSGQRKGELDPHIFAIAEEAYKQMTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSET  124 (691)
T ss_pred             CCCcCCHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCccccccc
Confidence            4799999999999999999999999999999999987 46799999999999999999999999999887644     34


Q ss_pred             hHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          75 LITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        75 ~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      .++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       125 ~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~  164 (691)
T cd01380         125 QVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQILFDK  164 (691)
T ss_pred             CHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEEEEECC
Confidence            6889999999999999999999999999999999999973

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=100.00  E-value=6.7e-36  Score=232.68  Aligned_cols=114  Identities=51%  Similarity=0.846  Sum_probs=105.2

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-------
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP-------   72 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~-------   72 (114)
                      ++|+|+++++..|+++...++|||+|++++.||+.|.. ..+|+|+|+||||||||+..|.+++++...++..       
T Consensus        50 ~l~ly~~~~~~~Y~~~~~~~~~PHiyaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~  129 (693)
T cd01377          50 RLPIYTEEVVEMYRGKKREEMPPHIFAIADNAYRSMLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSG  129 (693)
T ss_pred             cCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccc
Confidence            47899999999999999999999999999999999875 6799999999999999999999999998876542       


Q ss_pred             --chhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          73 --SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        73 --~~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                        ...++++|.+++|||||||||||.+|+||||||||++|+|++
T Consensus       130 ~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~l~f~~  173 (693)
T cd01377         130 KGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFGKFIRIHFGN  173 (693)
T ss_pred             cccccHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECC
Confidence              235888999999999999999999999999999999999974

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>COG5022 Myosin heavy chain [Cytoskeleton]

Probab=100.00  E-value=8.1e-36  Score=238.88  Aligned_cols=113  Identities=52%  Similarity=0.855  Sum_probs=105.8

Q ss_pred             CCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc---hhHH
Q psy7658           2 YDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS---NLIT   77 (114)
Q Consensus         2 l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~---~~~~   77 (114)
                      ||+|..+++..|.++.+.+++||+|++|+.||++|.. .++|+|+|+||||+|||+.++.|+++++...+...   ..++
T Consensus       112 L~iYt~d~i~~Y~~K~r~el~PHvfAIAe~aY~~lls~~eNQtIiISGESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE  191 (1463)
T COG5022         112 LGIYTDDIIQSYSGKNRLELEPHVFAIAEEAYRNLLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSSTVEISSIE  191 (1463)
T ss_pred             CCCccHHHHHHhccCccccCCchHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCcchHHHHH
Confidence            7999999999999999999999999999999999985 66999999999999999999999999998765433   4688


Q ss_pred             HHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          78 EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        78 ~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      ++|.+.||||||||||||.+||||||||||+++.|++
T Consensus       192 ~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~Fd~  228 (1463)
T COG5022         192 KQILATNPILEAFGNAKTVRNDNSSRFGKYIKIEFDE  228 (1463)
T ss_pred             HHHHhcchHHHHhccccccccCCcccccceEEEEECC
Confidence            9999999999999999999999999999999999984

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=100.00  E-value=1.2e-35  Score=230.50  Aligned_cols=113  Identities=53%  Similarity=0.930  Sum_probs=105.3

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQ   79 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~   79 (114)
                      +||+|+.+++..|+++.+.++|||+|++++.||+.|.. ..+|+|+|+||||||||+..|.++.++...++.. ..++++
T Consensus        45 ~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~-~~i~~~  123 (671)
T cd01381          45 ILPIYTADEIKLYKNKSIGELPPHIFAISDNAYTNMQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH-SWIEQQ  123 (671)
T ss_pred             cCCCCCHHHHHHHhcCCccccCCCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC-CcHHHH
Confidence            57999999999999999999999999999999999875 6799999999999999999999999999887653 357889


Q ss_pred             HhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          80 ILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        80 i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +.+++|||||||||||.+|+||||||||++|+|++
T Consensus       124 il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~F~~  158 (671)
T cd01381         124 ILEANPILEAFGNAKTIRNDNSSRFGKYIDIHFNK  158 (671)
T ss_pred             HHHHHHHHHHhhccccCCCCCccccceeEEEEECC
Confidence            99999999999999999999999999999999973

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=100.00  E-value=2.3e-35  Score=231.18  Aligned_cols=114  Identities=29%  Similarity=0.530  Sum_probs=104.3

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc-hhHHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS-NLITE   78 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~-~~~~~   78 (114)
                      +||+|+++++..|+++...++|||||++++.||++|.. ..+|+|+|+||||||||+..|.+++++...++... ....+
T Consensus        45 ~l~iY~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~e  124 (767)
T cd01386          45 PLALYSEKVPSMFRGCKAEDMPPHIYSLAQTAYRALLETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDGRVSVE  124 (767)
T ss_pred             CCCCCCHHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCcccHHH
Confidence            57999999999999999999999999999999999875 67999999999999999999999999998776543 23457


Q ss_pred             HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      ++.+++|||||||||||.+|+||||||||++|+|++
T Consensus       125 ~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~F~~  160 (767)
T cd01386         125 KVRALFTILEAFGNVSTALNGNATRFTQILSLDFDQ  160 (767)
T ss_pred             HHHhhchHHHHhhccCcCCCCCcCcceeEEEEEECC
Confidence            899999999999999999999999999999999973

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=100.00  E-value=2.8e-35  Score=229.12  Aligned_cols=114  Identities=49%  Similarity=0.802  Sum_probs=103.8

Q ss_pred             CCCCCCHHHHHHhhcCC-CCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC--chhH
Q psy7658           1 MYDMYGLDMVKKYEGQI-LGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP--SNLI   76 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~-~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~--~~~~   76 (114)
                      +||+|+++++..|++.. ..++|||+|++++.||+.|.. ..+|+|+|+||||||||+..|.+++++...++..  ...+
T Consensus        52 ~l~~y~~~~~~~Y~~~~~~~~lpPHiy~iA~~Ay~~m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~~~~~i  131 (692)
T cd01385          52 FLPIYNPKYVRLYENQQRLGKLPPHIFAIADVAYYNMLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGYAGSGV  131 (692)
T ss_pred             CCCCCCHHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCccCCcH
Confidence            47999999999999887 788999999999999999874 6799999999999999999999999998775432  3468


Q ss_pred             HHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          77 TEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        77 ~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      ++++.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       132 ~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~F~~  169 (692)
T cd01385         132 EQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVNYRE  169 (692)
T ss_pred             HHHHHHHHHHHHHhhccccCCCCCccccceeEEEEECC
Confidence            88999999999999999999999999999999999973

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=100.00  E-value=2.8e-35  Score=228.68  Aligned_cols=113  Identities=60%  Similarity=0.977  Sum_probs=105.5

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQ   79 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~   79 (114)
                      +||+|+++++..|++....++|||+|++++.||+.|.. ..+|+|+|+|+||||||+..|.++.++...++.....+.++
T Consensus        46 ~l~ly~~~~~~~Y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~  125 (677)
T cd01387          46 MFPIYGPEQVQQYAGRALGENPPHLFAIANLAFAKMLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGGSAVITEQ  125 (677)
T ss_pred             CCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCCcchHHHH
Confidence            47999999999999999999999999999999999874 67999999999999999999999999998765555668899


Q ss_pred             HhhhchHHHhhCCcccCCCCCCCCceeeEEEEec
Q psy7658          80 ILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK  113 (114)
Q Consensus        80 i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~  113 (114)
                      +.+++|||||||||||.+|+||||||||++|+|+
T Consensus       126 il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~f~  159 (677)
T cd01387         126 ILEATPLLEAFGNAKTVRNDNSSRFGKFVEIFLE  159 (677)
T ss_pred             HHHHHHHHHHHhCcCCCCCCCccccceEEEEEec
Confidence            9999999999999999999999999999999995

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=100.00  E-value=5.6e-35  Score=226.14  Aligned_cols=114  Identities=45%  Similarity=0.723  Sum_probs=105.5

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQ   79 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~   79 (114)
                      +||+|+++++..|+++.+.+.|||+|++++.||+.|. ...+|+|+|+||||||||+.+|.+++++...++.....++++
T Consensus        45 ~l~ly~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~~~~i~~~  124 (653)
T cd01379          45 QLGLYTTQHSRLYTGQKRSSNPPHIFAIADAAYQSLVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKANNRTLQEK  124 (653)
T ss_pred             CCCCCCHHHHHhhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCCCccHHHH
Confidence            4789999999999999999999999999999999987 467999999999999999999999999987655445568899


Q ss_pred             HhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          80 ILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        80 i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +.+++|||||||||||.+|+||||||||++|+|++
T Consensus       125 il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~f~~  159 (653)
T cd01379         125 ILQVNSLVEAFGNARTGINDNSSRFGKYLEMKFTR  159 (653)
T ss_pred             HHHHHHHHHHhhccCcCCCCCcccceeEEEEEECC
Confidence            99999999999999999999999999999999974

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=100.00  E-value=6.1e-35  Score=226.77  Aligned_cols=114  Identities=45%  Similarity=0.787  Sum_probs=105.7

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc--hhHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS--NLIT   77 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~--~~~~   77 (114)
                      +||+|+++++..|+++.+.++|||+|++++.||+.|.. ..+|+|+|+|+||||||+..|.++.++...++...  ..++
T Consensus        45 ~l~ly~~~~~~~Y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~i~  124 (674)
T cd01378          45 QLPIYTDETIELYKGKSRYELPPHIYALADNAYRSMKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQKVERVK  124 (674)
T ss_pred             CCCCCCHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCCccccHH
Confidence            57999999999999999999999999999999999885 67999999999999999999999999998876543  3588


Q ss_pred             HHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          78 EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        78 ~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +++.+++|||||||||||.+|+||||||||++|+|++
T Consensus       125 ~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~  161 (674)
T cd01378         125 DVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQFDF  161 (674)
T ss_pred             HHHHHHHHHHHHhhccccCCCCCcchhheeEEEEECC
Confidence            8999999999999999999999999999999999973

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=100.00  E-value=6.9e-35  Score=226.26  Aligned_cols=114  Identities=50%  Similarity=0.895  Sum_probs=105.0

Q ss_pred             CCC-CCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC---chh
Q psy7658           1 MYD-MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP---SNL   75 (114)
Q Consensus         1 ~l~-iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~---~~~   75 (114)
                      +|| +|+.+++..|+++...++|||+|++++.||++|.. ..+|+|+|+|+||||||+..|.++.++...++..   ...
T Consensus        46 ~l~~iy~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~  125 (674)
T cd01384          46 RLPHLYDVHMMEQYKGAALGELSPHVFAIADAAYRAMINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRT  125 (674)
T ss_pred             cCCcCCCHHHHHHhcCCCcCCCCCCHHHHHHHHHHHHHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCccccc
Confidence            467 99999999999999999999999999999999885 6699999999999999999999999998876543   235


Q ss_pred             HHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          76 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        76 ~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +++++.+++|||||||||||.+|+||||||||++|+|++
T Consensus       126 i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~f~~  164 (674)
T cd01384         126 VEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQFDD  164 (674)
T ss_pred             HHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEEECC
Confidence            889999999999999999999999999999999999973

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=100.00  E-value=1.2e-34  Score=226.31  Aligned_cols=113  Identities=54%  Similarity=0.887  Sum_probs=104.2

Q ss_pred             CCC-CCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHH
Q psy7658           1 MYD-MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITE   78 (114)
Q Consensus         1 ~l~-iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~   78 (114)
                      ++| +|+.+++..|+++...++|||+|++++.||+.|.. ..+|+|+|+|+||||||+..+.++.++....+.. ..+++
T Consensus        49 ~l~~lY~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~-~~i~~  127 (717)
T cd01382          49 DIPKLYSSDTIKKYQGKSLGTLPPHVFAIADKAYRDMKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG-QDIDD  127 (717)
T ss_pred             cccccCCHHHHHHhhCCCcCcCCCcHHHHHHHHHHHHHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC-ccHHH
Confidence            355 99999999999999999999999999999999874 6799999999999999999999999998776543 45789


Q ss_pred             HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      ++.+++|||||||||||.+|+||||||||++|+|++
T Consensus       128 ~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~f~~  163 (717)
T cd01382         128 RIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE  163 (717)
T ss_pred             HHHHHHHHHHHhhccccCCCCCcccceeEEEEEECC
Confidence            999999999999999999999999999999999974

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>cd00124 MYSc Myosin motor domain

Probab=100.00  E-value=2.2e-34  Score=224.27  Aligned_cols=114  Identities=53%  Similarity=0.853  Sum_probs=107.2

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQ   79 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~   79 (114)
                      ++|+|+++++..|+++...++|||+|++++.||+.|.. ..+|+|+|+|+||||||+..+.++.++...++.....+.++
T Consensus        45 ~l~~y~~~~~~~y~~~~~~~~pPHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~i~~~  124 (679)
T cd00124          45 DLPNYGPETIRKYRGKSRSELPPHVFAIADRAYRNMLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSNDTGIEEK  124 (679)
T ss_pred             CCCCCCHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCCcchHHHH
Confidence            47899999999999999999999999999999999885 67999999999999999999999999998877666678999


Q ss_pred             HhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          80 ILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        80 i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       125 i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~f~~  159 (679)
T cd00124         125 ILAANPILEAFGNAKTVRNNNSSRFGKFIELQFDE  159 (679)
T ss_pred             HHHHhHHHHHhcccccCCCCCcccceeEEEEEECC
Confidence            99999999999999999999999999999999973

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>smart00242 MYSc Myosin

Probab=100.00  E-value=2.8e-34  Score=223.47  Aligned_cols=114  Identities=54%  Similarity=0.888  Sum_probs=106.0

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC--chhHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP--SNLIT   77 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~--~~~~~   77 (114)
                      ++|+|+++++..|+++...++|||+|++++.||+.|.. ..+|+|+|+|+||||||+..+.++.++...++..  ...++
T Consensus        51 ~l~~y~~~~~~~y~~~~~~~~~PHifavA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~~~~~i~  130 (677)
T smart00242       51 QLPIYTDEVIKKYRGKSRGELPPHVFAIADNAYRNMLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNTSVGSVE  130 (677)
T ss_pred             cCCCCCHHHHHHccCCCCCCCCCCHHHHHHHHHHHHHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCCccccHH
Confidence            47899999999999999999999999999999999885 6699999999999999999999999999887654  45688


Q ss_pred             HHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          78 EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        78 ~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +++.+++|||||||||+|.+|+||||||||++|+|++
T Consensus       131 ~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~f~~  167 (677)
T smart00242      131 DQILESNPILEAFGNAKTVRNNNSSRFGKFIEIHFDA  167 (677)
T ss_pred             HHHHHHHHHHHHhhccccCCCCCccchheeEEEEECC
Confidence            9999999999999999999999999999999999973

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>KOG0161|consensus

Probab=100.00  E-value=2.3e-34  Score=237.48  Aligned_cols=114  Identities=50%  Similarity=0.841  Sum_probs=106.3

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC----c--
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP----S--   73 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~----~--   73 (114)
                      |||||+..++.+|+|+++.++|||||++++.||++|. ..++|+|.|+|+||+|||++++.++.|+...++..    .  
T Consensus       127 ~lpiYt~~v~~~ykgkrr~e~pPHIfavad~AYr~mL~~renQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~  206 (1930)
T KOG0161|consen  127 RLPIYTESVVRMYKGKKREEMPPHIFAVADEAYRNMLQDRENQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIE  206 (1930)
T ss_pred             CCCCCCHHHHHHhcccccccCCchHHHHHHHHHHHHHhcCCCceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCC
Confidence            7999999999999999999999999999999999987 57899999999999999999999999998876532    1  


Q ss_pred             hhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          74 NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        74 ~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      ..+.++|.+++|+||+||||+|.+|+||||||+||+++|+.
T Consensus       207 ~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfirI~F~~  247 (1930)
T KOG0161|consen  207 GTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFIRIHFDA  247 (1930)
T ss_pred             CChHHHHHHhCchHHHhcChhhhcCCCCcccceeEEEecCC
Confidence            46889999999999999999999999999999999999973

>KOG0164|consensus

Probab=100.00  E-value=6.5e-34  Score=216.61  Aligned_cols=113  Identities=47%  Similarity=0.829  Sum_probs=104.9

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc----hh
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS----NL   75 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~----~~   75 (114)
                      +|+||.++++..|+|...-+.|||+|+++|.||++|.. ..++||+|+||||+|||+..++|+++++...+...    ..
T Consensus        53 ql~IYg~~ti~kYkgre~yE~~PHlfAiad~aYrslk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eier  132 (1001)
T KOG0164|consen   53 QLNIYGPETIEKYKGREFYERPPHLFAIADAAYRSLKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIER  132 (1001)
T ss_pred             hcCccCHHHHHHhCCeeecccCchHHHhHHHHHHHHHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHH
Confidence            48999999999999999999999999999999999985 66999999999999999999999999988754332    35


Q ss_pred             HHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEec
Q psy7658          76 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK  113 (114)
Q Consensus        76 ~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~  113 (114)
                      +++++.+.|+||||||||||.+||||||||||+.++||
T Consensus       133 VKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDInFD  170 (1001)
T KOG0164|consen  133 VKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDINFD  170 (1001)
T ss_pred             HHHHHHhcchHHHHhcccccccCCchhhhhcceeeecc
Confidence            78899999999999999999999999999999999997

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=100.00  E-value=1.4e-33  Score=219.08  Aligned_cols=110  Identities=49%  Similarity=0.806  Sum_probs=100.5

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQ   79 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~   79 (114)
                      +||+|+.+++..|++...  .|||+|++++.||+.|.. ..+|+|+|+|+||||||+..|.++.++...++..  .++++
T Consensus        53 ~l~ly~~~~~~~y~~~~~--~~PHifaiA~~Ay~~m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~~--~i~~~  128 (677)
T cd01383          53 EVPLYGNDYIEAYRKKSN--DSPHVYAIADTAYNEMMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGGS--GIEYE  128 (677)
T ss_pred             CCCCCCHHHHHHhhCCCC--CCCCHHHHHHHHHHHHHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCCC--cHHHH
Confidence            478999999999997643  699999999999999985 6799999999999999999999999999876543  57889


Q ss_pred             HhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          80 ILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        80 i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       129 il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~f~~  163 (677)
T cd01383         129 ILQTNPILEAFGNAKTSRNDNSSRFGKLIEIHFSE  163 (677)
T ss_pred             HHHHHHHHHHhhccccCCCCCcCccceeEEEEECC
Confidence            99999999999999999999999999999999973

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=100.00  E-value=1e-33  Score=221.03  Aligned_cols=114  Identities=50%  Similarity=0.852  Sum_probs=103.0

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc----hh
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS----NL   75 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~----~~   75 (114)
                      +||+|+.+++..|+++...++|||||++++.||+.|. ..++|+|+|+|+||||||+..+++++++...+....    ..
T Consensus        44 ~l~~y~~~~~~~y~~~~~~~~~PHif~~a~~A~~~m~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~  123 (689)
T PF00063_consen   44 PLPLYSDEVMEKYRGKRRQDLPPHIFAVAQRAYRQMLRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSS  123 (689)
T ss_dssp             --STSSHHHHHHHTTS-GGGS-SSHHHHHHHHHHHHHHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTH
T ss_pred             hhhhhhhhhhhhhhhhccccccCccchhhhcccccccccccccceeeccccccccccchHHHHHHHhhhccccccccccc
Confidence            4789999999999999999999999999999999987 467999999999999999999999999998866544    46


Q ss_pred             HHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          76 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        76 ~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +.+++.++++||||||||+|.+|+||||||||++|+|++
T Consensus       124 i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l~f~~  162 (689)
T PF00063_consen  124 IEKKILAANPILEAFGNAKTPRNDNSSRFGKFIELQFDD  162 (689)
T ss_dssp             HHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEEEEET
T ss_pred             ccceEEeccchhhhhcccccccCCcccccceEEEEEecc
Confidence            889999999999999999999999999999999999974

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>KOG0163|consensus

Probab=100.00  E-value=3.7e-33  Score=213.69  Aligned_cols=111  Identities=50%  Similarity=0.877  Sum_probs=104.5

Q ss_pred             CCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHHHh
Q psy7658           3 DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQIL   81 (114)
Q Consensus         3 ~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~i~   81 (114)
                      .+|+++.++.|+|+..+++|||||+++|.+|+.|.+ +..|.|+++|+||+|||+..+.++++++..-|+ ...++.++.
T Consensus       105 ~lYs~etIK~Y~GkSLGq~~PHvFAIADKa~RdMr~~k~SQSIIVSGESGAGKTEstK~vLrYLces~gs-ag~Iq~ril  183 (1259)
T KOG0163|consen  105 GLYSPETIKEYRGKSLGQLPPHVFAIADKAYRDMRVYKLSQSIIVSGESGAGKTESTKAVLRYLCESWGS-AGPIQTRIL  183 (1259)
T ss_pred             cccCHHHHHHhcCCcccCCCCceeeechHHHHHHHHHhhcccEEEecCCCCCcchhHHHHHHHHHhccCC-CCcHHHHHh
Confidence            479999999999999999999999999999999985 669999999999999999999999999987766 456889999


Q ss_pred             hhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          82 EASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        82 ~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      .+||||||||||||.+|+||||||||+++||++
T Consensus       184 eaNPiLEAFGNAKT~RNNNSSRFGKFveiHf~d  216 (1259)
T KOG0163|consen  184 EANPILEAFGNAKTLRNNNSSRFGKFVEIHFDD  216 (1259)
T ss_pred             ccChHHHHhccchhhccCChhhccceEEEEEcC
Confidence            999999999999999999999999999999985

>KOG0162|consensus

Probab=99.97  E-value=3.5e-32  Score=207.68  Aligned_cols=114  Identities=41%  Similarity=0.710  Sum_probs=106.6

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc--hhHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS--NLIT   77 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~--~~~~   77 (114)
                      .||+|....+..|.|+.+-+.|||||++++..|++|.. .++||++|+||||+|||..++.|++++...+|...  ..++
T Consensus        63 ~m~~ft~~~~~~YqG~~q~E~pPHiyAladnmY~nM~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~g~kvq~vk  142 (1106)
T KOG0162|consen   63 QMPYFTEKEMELYQGAAQYENPPHIYALADNMYRNMKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGGGEKVQHVK  142 (1106)
T ss_pred             ccccchHHHHHHhhchhhccCCchhhhhHHHHHHHhhhccccceEEEecCCCCCchHHHHHHHHHHHHhccCCcchhhhh
Confidence            47999999999999999999999999999999999985 78999999999999999999999999998876544  3688


Q ss_pred             HHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          78 EQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        78 ~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +.|.+.||+||+||||||.+|+||||||||++++|+.
T Consensus       143 diiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~Fs~  179 (1106)
T KOG0162|consen  143 DIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQFSR  179 (1106)
T ss_pred             hHhhccchHHHHhcchhhhccCCcccccceEEEEecC
Confidence            9999999999999999999999999999999999974

>KOG0160|consensus

Probab=99.92  E-value=6.3e-26  Score=177.70  Aligned_cols=111  Identities=50%  Similarity=0.859  Sum_probs=103.1

Q ss_pred             CC-CCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc-hhHHH
Q psy7658           2 YD-MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS-NLITE   78 (114)
Q Consensus         2 l~-iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~-~~~~~   78 (114)
                      +| +|+.+.+..|. ...+++.||+|++++.+|++|.. ..+|.|+++|+||+|||...+.+++++...++... ..++.
T Consensus        54 ~~~ly~~~~i~~y~-~~~~~l~ph~favA~~ay~~m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~~~~~~vE~  132 (862)
T KOG0160|consen   54 LPHLYGKKMISAYQ-AIQGELSPHLFAVAEEAYRDMTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGSVEGRSIEN  132 (862)
T ss_pred             cchhccHHHHHhhc-ccccccCcchhhHHHHHHHHhhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhccchhhHHHH
Confidence            56 89999999999 88889999999999999999985 55899999999999999999999999999887633 46899


Q ss_pred             HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEec
Q psy7658          79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK  113 (114)
Q Consensus        79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~  113 (114)
                      ++..++||+|+||||+|.+|+||||||||++++|+
T Consensus       133 ~vL~snpi~EafgNakT~rndnsSrFgK~iei~Fd  167 (862)
T KOG0160|consen  133 KVLASNPILEAFGNAKTTRNDNSSRFGKVIEITFD  167 (862)
T ss_pred             HHHhcCCcchhhccchhhhcccHHHhhhHHHHhhh
Confidence            99999999999999999999999999999999997

>KOG4229|consensus

Probab=99.89  E-value=8.3e-24  Score=169.03  Aligned_cols=113  Identities=50%  Similarity=0.791  Sum_probs=104.2

Q ss_pred             CCC-CCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHH
Q psy7658           1 MYD-MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITE   78 (114)
Q Consensus         1 ~l~-iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~   78 (114)
                      ++| +|.+..+..|.+..+++.|||||++++.+|++|.. ..+|||+++|+||+|||+.++++.+++...+.......+.
T Consensus       106 ~~~fiy~~~~~~ly~~~~~ge~~phifa~ad~~y~~m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~~~~~~e~  185 (1062)
T KOG4229|consen  106 PIPFLYLPRFSKLYSGKPLGEDPPHIFAIADLAYQDMLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQGNNSPVEQ  185 (1062)
T ss_pred             cccccccHHhhccccccccCCCCcchhhhhhhHHHhhhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcCCCCchhh
Confidence            467 99999999999999999999999999999999986 8899999999999999999999999999987433345678


Q ss_pred             HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEec
Q psy7658          79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK  113 (114)
Q Consensus        79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~  113 (114)
                      .+..++++||+||||+|+.|+||||||+|+++.|.
T Consensus       186 ~il~a~~llEafgnA~t~~ndnssrfgk~i~~~~~  220 (1062)
T KOG4229|consen  186 LILSANPLLEAFGNAKTPRNDNSSRFGKYIKVNFR  220 (1062)
T ss_pred             hhhcchHHHHHhcccCCcccCchhhhhheEEeccc
Confidence            89999999999999999999999999999999985

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.79  E-value=3.5e-09  Score=73.92  Aligned_cols=36  Identities=25%  Similarity=0.375  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||++++++++..+..|.
T Consensus        24 L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~   59 (248)
T COG1116          24 LSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE   59 (248)
T ss_pred             eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            457899999999999999999999999999998875

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=98.71  E-value=7.8e-09  Score=75.42  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=34.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|+.++++|||||||||++++|+++..+.+|..
T Consensus        24 l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I   60 (338)
T COG3839          24 LDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI   60 (338)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4578899999999999999999999999999998865

>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.70  E-value=8.1e-09  Score=75.72  Aligned_cols=37  Identities=22%  Similarity=0.348  Sum_probs=34.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|+++.++|||||||||++|+|+++..+.+|..
T Consensus        26 l~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I   62 (352)
T COG3842          26 LDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI   62 (352)
T ss_pred             eeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4578899999999999999999999999999998854

>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]

Probab=98.66  E-value=1.3e-08  Score=71.80  Aligned_cols=37  Identities=22%  Similarity=0.290  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|||||||||++|.+.+++.+..|..
T Consensus        23 ~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V   59 (258)
T COG1120          23 FSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV   59 (258)
T ss_pred             EEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEE
Confidence            4577899999999999999999999999999988754

>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.62  E-value=2.2e-08  Score=69.81  Aligned_cols=37  Identities=30%  Similarity=0.362  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|||||||||+++.++++..+..|+.
T Consensus        28 ~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I   64 (252)
T COG1124          28 LEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSI   64 (252)
T ss_pred             EEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Confidence            4478899999999999999999999999999988764

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.61  E-value=2.6e-08  Score=68.53  Aligned_cols=37  Identities=32%  Similarity=0.344  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|||||||||++|++.++..+.+|..
T Consensus        23 l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I   59 (240)
T COG1126          23 LSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI   59 (240)
T ss_pred             eeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceE
Confidence            4478899999999999999999999999999988865

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.59  E-value=3.4e-08  Score=68.52  Aligned_cols=36  Identities=28%  Similarity=0.338  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|+.++|+|||||||||+++++.++..+.+|.
T Consensus        26 l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~   61 (226)
T COG1136          26 LEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE   61 (226)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence            557899999999999999999999999999988775

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=98.58  E-value=3.3e-08  Score=67.69  Aligned_cols=37  Identities=24%  Similarity=0.295  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+||+||||+++++++++.+..|+.
T Consensus        25 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i   61 (218)
T cd03255          25 LSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEV   61 (218)
T ss_pred             EEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeE
Confidence            5578899999999999999999999999998877753

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.58  E-value=5.4e-08  Score=68.80  Aligned_cols=56  Identities=21%  Similarity=0.266  Sum_probs=43.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchh--------HHHHHhhhchHHHhhC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNL--------ITEQILEASPLLESFG   91 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~--------~~~~i~~~~~ileafg   91 (114)
                      |.+.++++++|+|||||||||+.+.++++..+..|...-.        ..++......+|+..|
T Consensus        34 f~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vg   97 (268)
T COG4608          34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEERRERVLELLEKVG   97 (268)
T ss_pred             EEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhHHHHHHHHHHHHhC
Confidence            6688999999999999999999999999999998865311        2233344555667666

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=98.57  E-value=3.6e-08  Score=66.31  Aligned_cols=37  Identities=19%  Similarity=0.288  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|++||||||+++++++.+.+..|..
T Consensus        13 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   49 (190)
T TIGR01166        13 FAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAV   49 (190)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeE
Confidence            5578899999999999999999999999998877743

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.57  E-value=3.9e-08  Score=67.05  Aligned_cols=37  Identities=27%  Similarity=0.415  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+||+||||+++++++++.+..|..
T Consensus        22 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   58 (211)
T cd03225          22 LTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEV   58 (211)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            5578899999999999999999999999998877743

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.56  E-value=3.5e-08  Score=69.44  Aligned_cols=41  Identities=17%  Similarity=0.333  Sum_probs=35.4

Q ss_pred             hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ++++  +.+.++++++|+||||+||||++|.+++++.+..|+.
T Consensus        19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i   61 (254)
T COG1121          19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI   61 (254)
T ss_pred             eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceE
Confidence            5555  4478899999999999999999999999999887754

>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional

Probab=98.55  E-value=5.1e-08  Score=66.95  Aligned_cols=37  Identities=24%  Similarity=0.203  Sum_probs=33.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+|||||||+++++++.+.+.+|..
T Consensus         8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i   44 (213)
T PRK15177          8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDF   44 (213)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCE
Confidence            5578899999999999999999999999998888764

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=98.55  E-value=4.3e-08  Score=66.68  Aligned_cols=37  Identities=22%  Similarity=0.436  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+|||||||+++++++++.+..|..
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   57 (205)
T cd03226          21 LDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSI   57 (205)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            5578899999999999999999999999998877753

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup

Probab=98.55  E-value=4.4e-08  Score=66.94  Aligned_cols=36  Identities=22%  Similarity=0.321  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      |...+|++++|+|+||+||||+++++++++.+.+|+
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~   56 (213)
T cd03259          21 LTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGE   56 (213)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            557889999999999999999999999999887764

This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=98.55  E-value=4.7e-08  Score=66.80  Aligned_cols=36  Identities=28%  Similarity=0.409  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus        23 ~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~   58 (214)
T TIGR02673        23 LHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQ   58 (214)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            557889999999999999999999999998877764

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=98.54  E-value=4.4e-08  Score=67.06  Aligned_cols=37  Identities=22%  Similarity=0.372  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+|||||||+++++++++.+..|+.
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   60 (216)
T TIGR00960        24 FHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKI   60 (216)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            5578899999999999999999999999998877643

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.53  E-value=4.8e-08  Score=67.72  Aligned_cols=36  Identities=28%  Similarity=0.450  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|+|||||||+++++++++.+..|.
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~   56 (235)
T cd03261          21 LDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGE   56 (235)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            557899999999999999999999999999887764

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively

Probab=98.52  E-value=6.1e-08  Score=66.13  Aligned_cols=36  Identities=31%  Similarity=0.372  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|+|||||||+++++++++.+..|.
T Consensus        21 ~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~   56 (213)
T cd03262          21 LTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGT   56 (213)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            557889999999999999999999999999877764

Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM

>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters

Probab=98.52  E-value=5.1e-08  Score=66.60  Aligned_cols=37  Identities=22%  Similarity=0.370  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+||+||||+++++++++.+..|..
T Consensus        20 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i   56 (213)
T cd03235          20 FEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSI   56 (213)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence            5578899999999999999999999999998877753

This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=98.52  E-value=5.6e-08  Score=65.98  Aligned_cols=36  Identities=25%  Similarity=0.285  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++.+.+..|+
T Consensus        19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   54 (206)
T TIGR03608        19 LTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQ   54 (206)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            557789999999999999999999999999887774

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively

Probab=98.52  E-value=5.1e-08  Score=66.98  Aligned_cols=36  Identities=19%  Similarity=0.364  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|+||+||||+++++++.+.+..|+
T Consensus        25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   60 (220)
T cd03293          25 LSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE   60 (220)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            557899999999999999999999999998877764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=98.52  E-value=5.4e-08  Score=66.83  Aligned_cols=36  Identities=19%  Similarity=0.366  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|+||+||||+++++++.+.+.+|.
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~   56 (220)
T cd03265          21 FRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGR   56 (220)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            556789999999999999999999999998877764

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=98.52  E-value=5.1e-08  Score=66.53  Aligned_cols=36  Identities=25%  Similarity=0.412  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|+||+||||+++++++++.+..|.
T Consensus        22 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   57 (214)
T cd03292          22 ISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGT   57 (214)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            557889999999999999999999999998877764

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine

Probab=98.52  E-value=5.2e-08  Score=67.47  Aligned_cols=36  Identities=22%  Similarity=0.387  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|+|||||||+++++++++.+..|.
T Consensus        21 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~   56 (236)
T cd03219          21 FSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS   56 (236)
T ss_pred             EEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCce
Confidence            557889999999999999999999999999877774

MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).

>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]

Probab=98.52  E-value=9.1e-08  Score=65.48  Aligned_cols=43  Identities=19%  Similarity=0.323  Sum_probs=37.3

Q ss_pred             hhhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          31 AAYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        31 ~~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      +|.++  |...+|+++++.||+|+||||++|++..++.+.+|...
T Consensus        16 ~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~   60 (245)
T COG4555          16 QAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT   60 (245)
T ss_pred             hhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEE
Confidence            45555  45788999999999999999999999999999988653

>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein

Probab=98.52  E-value=6e-08  Score=67.43  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+|||||||+++++++++.+.+|..
T Consensus        23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (243)
T TIGR02315        23 LNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI   59 (243)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEE
Confidence            5578899999999999999999999999998877743

Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.

>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE)

Probab=98.52  E-value=6.2e-08  Score=66.67  Aligned_cols=36  Identities=25%  Similarity=0.443  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++.+.+..|.
T Consensus        26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   61 (228)
T cd03257          26 FSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS   61 (228)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            557889999999999999999999999999887774

The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.

>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity

Probab=98.51  E-value=5.8e-08  Score=66.20  Aligned_cols=37  Identities=14%  Similarity=0.340  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++||||||+++++++.+.+..|+.
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (210)
T cd03269          21 FSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEV   57 (210)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            5578999999999999999999999999988777643

In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.51  E-value=8.4e-08  Score=64.13  Aligned_cols=37  Identities=24%  Similarity=0.468  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+..|+.++|+|||||||||++|.++.+..+..|..
T Consensus        24 l~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l   60 (223)
T COG4619          24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL   60 (223)
T ss_pred             eeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceE
Confidence            5578899999999999999999999999999988754

>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport

Probab=98.51  E-value=7.1e-08  Score=66.74  Aligned_cols=37  Identities=22%  Similarity=0.297  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+||+||||+++.+++.+.+..|..
T Consensus        26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   62 (233)
T cd03258          26 LSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSV   62 (233)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            5678899999999999999999999999998887753

Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids

Probab=98.51  E-value=6.8e-08  Score=66.73  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|+|||||||+++++++.+.+.+|.
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   56 (232)
T cd03218          21 LSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGK   56 (232)
T ss_pred             eEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            557789999999999999999999999999887774

The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.

>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids

Probab=98.51  E-value=6.3e-08  Score=66.45  Aligned_cols=37  Identities=30%  Similarity=0.442  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+|||||||+++++++++.+..|..
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   57 (222)
T cd03224          21 LTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI   57 (222)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            5578899999999999999999999999998877643

The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.

>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient

Probab=98.51  E-value=8.3e-08  Score=66.15  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=32.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh-----hhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL-----AAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~-----~~~~g~   71 (114)
                      +...+|++++|+|+|||||||+++++++++     .+..|+
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~   61 (227)
T cd03260          21 LDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE   61 (227)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeE
Confidence            557889999999999999999999999998     776664

The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).

>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein

Probab=98.50  E-value=7e-08  Score=66.22  Aligned_cols=37  Identities=27%  Similarity=0.342  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++.+.+..|..
T Consensus        26 l~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   62 (221)
T TIGR02211        26 LSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEV   62 (221)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            5578999999999999999999999999998877743

This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.

>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system

Probab=98.50  E-value=7.3e-08  Score=66.87  Aligned_cols=36  Identities=22%  Similarity=0.361  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|+|||||||+++++++++.+..|.
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   57 (241)
T cd03256          22 LSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGS   57 (241)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCce
Confidence            557889999999999999999999999999877764

Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]

Probab=98.50  E-value=6.8e-08  Score=69.54  Aligned_cols=37  Identities=19%  Similarity=0.308  Sum_probs=33.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.++.++.+++.|||||||||++++|+++..+..|..
T Consensus        23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I   59 (345)
T COG1118          23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI   59 (345)
T ss_pred             eeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceE
Confidence            4578899999999999999999999999999998865

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=98.50  E-value=7.6e-08  Score=64.58  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+||+||||+++++++++.+..|..
T Consensus        20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i   56 (177)
T cd03222          20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDND   56 (177)
T ss_pred             cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEE
Confidence            4567899999999999999999999999998877754

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional

Probab=98.50  E-value=7.6e-08  Score=66.39  Aligned_cols=36  Identities=22%  Similarity=0.342  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++++.+..|.
T Consensus        31 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~   66 (228)
T PRK10584         31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGE   66 (228)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCee
Confidence            557889999999999999999999999999887774

>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds

Probab=98.50  E-value=7.4e-08  Score=66.05  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+||+||||+++++++.+.+..|..
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (220)
T cd03263          23 LNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA   59 (220)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            5578899999999999999999999999998877743

Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.

>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional

Probab=98.49  E-value=7.5e-08  Score=67.79  Aligned_cols=36  Identities=28%  Similarity=0.468  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|+|||||||+++++++++.+..|.
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   57 (255)
T PRK11248         22 LTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGS   57 (255)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            557889999999999999999999999999877764

>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK

Probab=98.49  E-value=7.3e-08  Score=65.80  Aligned_cols=36  Identities=25%  Similarity=0.403  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++.+++.+.+.+|+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~   56 (213)
T cd03301          21 LDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGR   56 (213)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            557889999999999999999999999998877764

ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.

>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import

Probab=98.49  E-value=7.3e-08  Score=67.00  Aligned_cols=36  Identities=28%  Similarity=0.389  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|+||+||||+++++++++.+..|.
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   58 (239)
T cd03296          23 LDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGT   58 (239)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            557889999999999999999999999998877664

Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit

Probab=98.49  E-value=7e-08  Score=69.48  Aligned_cols=37  Identities=19%  Similarity=0.358  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|+|||||||+++++++++.+.+|..
T Consensus        14 ~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i   50 (302)
T TIGR01188        14 FKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTA   50 (302)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            5578899999999999999999999999998887743

This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.49  E-value=8.9e-08  Score=65.40  Aligned_cols=41  Identities=29%  Similarity=0.454  Sum_probs=35.2

Q ss_pred             hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ++++  +.+..++.+++.|||||||||+++++.++..+..|..
T Consensus        20 ~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i   62 (259)
T COG4525          20 ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSI   62 (259)
T ss_pred             hhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceE
Confidence            4444  4467899999999999999999999999999988754

>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE

Probab=98.49  E-value=7.8e-08  Score=66.41  Aligned_cols=37  Identities=30%  Similarity=0.378  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++||||||+++++++++.+..|+.
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (230)
T TIGR03410        21 LEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSI   57 (230)
T ss_pred             eEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            5578899999999999999999999999998877743

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome

Probab=98.49  E-value=9.5e-08  Score=63.20  Aligned_cols=37  Identities=16%  Similarity=0.216  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++++.+..|..
T Consensus        22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   58 (166)
T cd03223          22 FEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI   58 (166)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            5578899999999999999999999999998877754

The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt

>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional

Probab=98.48  E-value=7.3e-08  Score=66.79  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.++++++|+|+||+||||+++++++++.+..|+
T Consensus        30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~   65 (233)
T PRK11629         30 FSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGD   65 (233)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            557889999999999999999999999998877664

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=98.48  E-value=8.3e-08  Score=64.05  Aligned_cols=37  Identities=24%  Similarity=0.319  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++.+.+..|..
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (178)
T cd03229          21 LNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI   57 (178)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            5578899999999999999999999999988877753

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system

Probab=98.48  E-value=7.7e-08  Score=66.77  Aligned_cols=37  Identities=19%  Similarity=0.313  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++|+||||+++++++...+.+|..
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i   58 (236)
T TIGR03864        22 FTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQI   58 (236)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            4578899999999999999999999999998877743

Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.

>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional

Probab=98.48  E-value=9.7e-08  Score=65.93  Aligned_cols=37  Identities=22%  Similarity=0.410  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++...+..|..
T Consensus        28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   64 (225)
T PRK10247         28 FSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL   64 (225)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence            5578999999999999999999999999988777743

>PRK13541 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.48  E-value=8.7e-08  Score=64.77  Aligned_cols=38  Identities=13%  Similarity=0.304  Sum_probs=33.6

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ++...+|++++|+|++|+||||+++++++.+.+..|..
T Consensus        20 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (195)
T PRK13541         20 SITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNI   57 (195)
T ss_pred             EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            36678899999999999999999999999988877743

>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D

Probab=98.48  E-value=8.8e-08  Score=66.38  Aligned_cols=37  Identities=19%  Similarity=0.322  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+||+||||+++++++++.+.+|..
T Consensus         6 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   42 (230)
T TIGR01184         6 LTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGV   42 (230)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            5577899999999999999999999999998877753

This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.

>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP

Probab=98.48  E-value=8.6e-08  Score=65.40  Aligned_cols=37  Identities=24%  Similarity=0.393  Sum_probs=33.3

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ++...++++++|+|++|+||||+++++++.+.+..|.
T Consensus        18 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~   54 (211)
T cd03298          18 DLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGR   54 (211)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            3667899999999999999999999999999887774

Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake

Probab=98.48  E-value=8.9e-08  Score=65.58  Aligned_cols=37  Identities=19%  Similarity=0.292  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+||+||||+++++++.+.+..|..
T Consensus        26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   62 (218)
T cd03266          26 FTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFA   62 (218)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence            5577899999999999999999999999988877743

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.

>PRK13538 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.48  E-value=9e-08  Score=65.12  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++.+.+.+|..
T Consensus        22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v   58 (204)
T PRK13538         22 FTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEV   58 (204)
T ss_pred             EEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            5578899999999999999999999999998887753

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=98.47  E-value=9.7e-08  Score=67.38  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=34.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+++.++++|+|||||||++|+|-+++.+.+|..
T Consensus        22 l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I   58 (309)
T COG1125          22 LTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI   58 (309)
T ss_pred             EEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceE
Confidence            5578999999999999999999999999999998865

>PRK10908 cell division protein FtsE; Provisional

Probab=98.47  E-value=8.3e-08  Score=66.01  Aligned_cols=37  Identities=19%  Similarity=0.290  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+||+||||+++++++.+.+.+|+.
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   59 (222)
T PRK10908         23 FHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKI   59 (222)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            5578999999999999999999999999998877743

>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.47  E-value=9e-08  Score=63.14  Aligned_cols=37  Identities=22%  Similarity=0.325  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|.|++|+||||+++++++...+..|..
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v   57 (163)
T cd03216          21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI   57 (163)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            5578999999999999999999999999998877743

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL

Probab=98.47  E-value=1e-07  Score=65.56  Aligned_cols=36  Identities=25%  Similarity=0.352  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++++.+..|.
T Consensus        29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~   64 (224)
T TIGR02324        29 LTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGR   64 (224)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence            557889999999999999999999999999887764

Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.

>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional

Probab=98.47  E-value=8.9e-08  Score=67.60  Aligned_cols=37  Identities=24%  Similarity=0.335  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus        33 l~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i   69 (257)
T PRK11247         33 LHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL   69 (257)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            4577899999999999999999999999998877753

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=98.47  E-value=6.2e-08  Score=61.62  Aligned_cols=37  Identities=30%  Similarity=0.371  Sum_probs=32.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++.+.+...+..|..
T Consensus         6 ~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i   42 (137)
T PF00005_consen    6 LEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSI   42 (137)
T ss_dssp             EEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEE
T ss_pred             EEEcCCCEEEEEccCCCccccceeeeccccccccccc
Confidence            4577899999999999999999999999998876643

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=98.46  E-value=1.3e-07  Score=63.89  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+..+++++|+|+||+||||++++|.++..+.+|..
T Consensus        20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i   56 (231)
T COG3840          20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEI   56 (231)
T ss_pred             EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceE
Confidence            3467899999999999999999999999999998754

>PRK13540 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.46  E-value=1.1e-07  Score=64.60  Aligned_cols=36  Identities=22%  Similarity=0.373  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++...+..|.
T Consensus        22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~   57 (200)
T PRK13540         22 FHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGE   57 (200)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCee
Confidence            557899999999999999999999999999887774

>PRK13539 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.46  E-value=1.1e-07  Score=64.92  Aligned_cols=37  Identities=24%  Similarity=0.452  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|++|+||||+++++++...+..|..
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   59 (207)
T PRK13539         23 FTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI   59 (207)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            5578899999999999999999999999988777743

>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance

Probab=98.46  E-value=9.9e-08  Score=64.96  Aligned_cols=36  Identities=19%  Similarity=0.357  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++++++.+.+.+|.
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   56 (208)
T cd03268          21 LHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGE   56 (208)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            556789999999999999999999999998877764

Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.

>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain

Probab=98.46  E-value=1.4e-07  Score=62.65  Aligned_cols=37  Identities=24%  Similarity=0.423  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++.+++...+..|..
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i   59 (173)
T cd03246          23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV   59 (173)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence            5578899999999999999999999999998887754

They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra

>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment

Probab=98.46  E-value=1.1e-07  Score=66.14  Aligned_cols=36  Identities=28%  Similarity=0.478  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|+||+||||+++++.+.+.+..|.
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   57 (242)
T cd03295          22 LEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGE   57 (242)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            557899999999999999999999999998887764

ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]

Probab=98.45  E-value=9.6e-08  Score=68.68  Aligned_cols=37  Identities=19%  Similarity=0.315  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++++|+|||||||+++++++++.+.+|+.
T Consensus        26 ~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i   62 (293)
T COG1131          26 FEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI   62 (293)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            4578899999999999999999999999999887753

>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export

Probab=98.45  E-value=1.3e-07  Score=62.70  Aligned_cols=37  Identities=30%  Similarity=0.412  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++.+++++.+..|..
T Consensus        23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i   59 (171)
T cd03228          23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI   59 (171)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence            5578899999999999999999999999998887744

They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=1.1e-07  Score=66.20  Aligned_cols=37  Identities=27%  Similarity=0.434  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+|||||||+++++++.+.+..|+.
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   60 (241)
T PRK14250         24 VKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSI   60 (241)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            5577899999999999999999999999998877743

>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional

Probab=98.45  E-value=1.2e-07  Score=66.04  Aligned_cols=36  Identities=22%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      |...+|++++|+|+||+||||+++++.+.+.+.+|.
T Consensus        24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~   59 (241)
T PRK10895         24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGN   59 (241)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            557889999999999999999999999999887774

>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein

Probab=98.45  E-value=1.3e-07  Score=65.29  Aligned_cols=37  Identities=24%  Similarity=0.436  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++.+.+..|..
T Consensus        24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   60 (229)
T cd03254          24 FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI   60 (229)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence            4578899999999999999999999999998887754

In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI

Probab=98.45  E-value=1e-07  Score=68.61  Aligned_cols=37  Identities=11%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+.+|..
T Consensus        25 l~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i   61 (303)
T TIGR01288        25 FTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI   61 (303)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            4578899999999999999999999999998777643

This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.

>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter

Probab=98.45  E-value=1.2e-07  Score=64.41  Aligned_cols=37  Identities=16%  Similarity=0.341  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|++|+||||+++++++++.+..|..
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (201)
T cd03231          21 FTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRV   57 (201)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            5578899999999999999999999999998877744

The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.

>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed

Probab=98.44  E-value=1.1e-07  Score=66.10  Aligned_cols=36  Identities=31%  Similarity=0.398  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|+||+||||+++++++++.+.+|.
T Consensus        22 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~   57 (240)
T PRK09493         22 LNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGD   57 (240)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            557889999999999999999999999999877774

>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis

Probab=98.44  E-value=1.4e-07  Score=62.92  Aligned_cols=37  Identities=24%  Similarity=0.317  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++.+++...+..|+.
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i   59 (178)
T cd03247          23 LELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI   59 (178)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEE
Confidence            5578999999999999999999999999998877754

The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.

>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=1.2e-07  Score=67.77  Aligned_cols=36  Identities=25%  Similarity=0.381  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|+|||||||+++++++++.+..|.
T Consensus        32 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   67 (289)
T PRK13645         32 LTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQ   67 (289)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            557889999999999999999999999999887764

>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.44  E-value=1.2e-07  Score=66.15  Aligned_cols=37  Identities=27%  Similarity=0.425  Sum_probs=34.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.++++.+|+|+||+||||++|.|++++.+..|..
T Consensus        29 l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI   65 (263)
T COG1127          29 LDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI   65 (263)
T ss_pred             eeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence            5578999999999999999999999999999998865

>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity

Probab=98.44  E-value=1.2e-07  Score=62.99  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=32.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++.+++.+.+..|..
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i   57 (173)
T cd03230          21 LTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI   57 (173)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            5578899999999999999999999999988777643

In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA

Probab=98.44  E-value=1.4e-07  Score=63.93  Aligned_cols=36  Identities=17%  Similarity=0.348  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++.+++.+.+..|.
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   56 (198)
T TIGR01189        21 FTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGE   56 (198)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccE
Confidence            557889999999999999999999999998877764

This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.

>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos)

Probab=98.44  E-value=1.3e-07  Score=63.37  Aligned_cols=37  Identities=19%  Similarity=0.313  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++.+.+.+..|..
T Consensus        21 ~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   57 (182)
T cd03215          21 FEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEI   57 (182)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4578899999999999999999999999998887753

The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.

>PRK13537 nodulation ABC transporter NodI; Provisional

Probab=98.44  E-value=1.1e-07  Score=68.67  Aligned_cols=36  Identities=17%  Similarity=0.282  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+.+|.
T Consensus        28 l~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~   63 (306)
T PRK13537         28 FHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGS   63 (306)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            557889999999999999999999999999888774

>PRK11124 artP arginine transporter ATP-binding subunit; Provisional

Probab=98.44  E-value=1.2e-07  Score=65.93  Aligned_cols=36  Identities=19%  Similarity=0.315  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++++++...+..|.
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   58 (242)
T PRK11124         23 LDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT   58 (242)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            557889999999999999999999999998877764

>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=1.2e-07  Score=67.27  Aligned_cols=36  Identities=22%  Similarity=0.202  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|+||+||||+++++++.+.+..|.
T Consensus        22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   57 (271)
T PRK13638         22 LDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGA   57 (271)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccE
Confidence            557789999999999999999999999999887774

>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake

Probab=98.43  E-value=1.2e-07  Score=65.89  Aligned_cols=37  Identities=22%  Similarity=0.347  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++.+.+..|..
T Consensus        42 ~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i   78 (236)
T cd03267          42 FTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEV   78 (236)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEE
Confidence            5577899999999999999999999999988877643

NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.

>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1

Probab=98.43  E-value=1.4e-07  Score=65.41  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++||||||+++++++.+.+..|+.
T Consensus        24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i   60 (238)
T cd03249          24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI   60 (238)
T ss_pred             EEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEE
Confidence            5578899999999999999999999999998887753

In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.

>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C

Probab=98.43  E-value=1.5e-07  Score=63.91  Aligned_cols=37  Identities=27%  Similarity=0.377  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|.|++|+||||+++.+++...+..|..
T Consensus        26 ~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i   62 (204)
T cd03250          26 LEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSV   62 (204)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeE
Confidence            5578999999999999999999999999998877744

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional

Probab=98.43  E-value=1.4e-07  Score=66.78  Aligned_cols=37  Identities=24%  Similarity=0.401  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+||+||||+++++++.+.+.+|..
T Consensus        34 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i   70 (267)
T PRK15112         34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEL   70 (267)
T ss_pred             EEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            5578999999999999999999999999998887753

>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.43  E-value=3.1e-07  Score=63.33  Aligned_cols=47  Identities=21%  Similarity=0.273  Sum_probs=39.0

Q ss_pred             Ceeeeehhhhhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658          23 PHLFAIGSAAYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        23 phiy~~~~~~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~   69 (114)
                      -.+|.....+++.  |...++++.+++|||||||||++|.+-++.....
T Consensus        13 l~~yYg~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~   61 (253)
T COG1117          13 LNLYYGDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIP   61 (253)
T ss_pred             eeEEECchhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCc
Confidence            3566667778776  4578899999999999999999999999887665

>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea

Probab=98.43  E-value=1.3e-07  Score=67.01  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++||||||+++++++.+.+..|.
T Consensus        45 ~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~   80 (269)
T cd03294          45 LDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGK   80 (269)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            557789999999999999999999999999887764

This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK

Probab=98.43  E-value=1.4e-07  Score=66.12  Aligned_cols=37  Identities=30%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+||+||||+++++.+++.+..|..
T Consensus        24 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   60 (253)
T TIGR02323        24 FDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTA   60 (253)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            5578899999999999999999999999998877643

Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.

>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein

Probab=98.43  E-value=1.3e-07  Score=66.26  Aligned_cols=36  Identities=22%  Similarity=0.380  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      |...++++++|+|+||+||||+++++++.+.+.+|.
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   56 (252)
T TIGR03005        21 FSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQ   56 (252)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            557899999999999999999999999999887764

Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.

>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional

Probab=98.43  E-value=1.4e-07  Score=66.28  Aligned_cols=37  Identities=32%  Similarity=0.302  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++|+||||+++++++.+.+..|..
T Consensus        27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   63 (258)
T PRK11701         27 FDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEV   63 (258)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            5578999999999999999999999999998877743

>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE

Probab=98.43  E-value=1.4e-07  Score=66.69  Aligned_cols=37  Identities=22%  Similarity=0.360  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++|+||||+++++++++.+.+|..
T Consensus        32 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   68 (265)
T TIGR02769        32 LSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTV   68 (265)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            5578999999999999999999999999998877743

This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.

>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional

Probab=98.43  E-value=1.4e-07  Score=65.30  Aligned_cols=38  Identities=29%  Similarity=0.434  Sum_probs=33.8

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ++...+|++++|+|++|+||||+++++++.+.+.+|..
T Consensus        19 s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   56 (232)
T PRK10771         19 DLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSL   56 (232)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            46678999999999999999999999999998877743

>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea

Probab=98.43  E-value=1.5e-07  Score=62.86  Aligned_cols=37  Identities=24%  Similarity=0.342  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++.+++.+..|..
T Consensus        20 ~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v   56 (180)
T cd03214          20 LSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEI   56 (180)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            5578899999999999999999999999998877743

Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.

>PRK15056 manganese/iron transporter ATP-binding protein; Provisional

Probab=98.43  E-value=1.3e-07  Score=67.14  Aligned_cols=37  Identities=22%  Similarity=0.423  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+||+||||+++++++++.+.+|..
T Consensus        28 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i   64 (272)
T PRK15056         28 FTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKI   64 (272)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            4577899999999999999999999999998877754

>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=1.2e-07  Score=67.38  Aligned_cols=36  Identities=22%  Similarity=0.319  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|+||+||||+++++++.+.+..|.
T Consensus        28 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~   63 (280)
T PRK13649         28 LTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGS   63 (280)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            557889999999999999999999999999887764

>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.42  E-value=1.5e-07  Score=66.36  Aligned_cols=37  Identities=24%  Similarity=0.311  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++|+||||+++++++.+.+..|..
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i   59 (258)
T PRK13548         23 LTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV   59 (258)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            5578899999999999999999999999998877743

>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters

Probab=98.42  E-value=1.7e-07  Score=64.32  Aligned_cols=37  Identities=30%  Similarity=0.371  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++...+..|..
T Consensus        25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   61 (220)
T cd03245          25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSV   61 (220)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeE
Confidence            4578899999999999999999999999988777743

Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.

>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E

Probab=98.42  E-value=1.6e-07  Score=65.13  Aligned_cols=37  Identities=38%  Similarity=0.498  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++++.+..|..
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (237)
T cd03252          23 LRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRV   59 (237)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence            5578899999999999999999999999998877743

coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.

>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD

Probab=98.42  E-value=1.5e-07  Score=65.41  Aligned_cols=36  Identities=25%  Similarity=0.305  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++.+.+.+|.
T Consensus        23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~   58 (242)
T TIGR03411        23 LYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGS   58 (242)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence            557899999999999999999999999998887774

Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.

>PRK13543 cytochrome c biogenesis protein CcmA; Provisional

Probab=98.42  E-value=1.5e-07  Score=64.51  Aligned_cols=37  Identities=16%  Similarity=0.380  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+||+||||+++++.+.+.+..|..
T Consensus        32 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   68 (214)
T PRK13543         32 FHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQI   68 (214)
T ss_pred             EEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeE
Confidence            5578899999999999999999999999998877743

>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]

Probab=98.42  E-value=2.6e-07  Score=62.68  Aligned_cols=48  Identities=21%  Similarity=0.294  Sum_probs=39.5

Q ss_pred             eeeehhhhhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          25 LFAIGSAAYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        25 iy~~~~~~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      -|..+..|++.+  .+.+++.+.++|+||+||||++|++.+...+..|+.
T Consensus        10 ~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i   59 (223)
T COG2884          10 AYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI   59 (223)
T ss_pred             hcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceE
Confidence            344454576664  478899999999999999999999999999888764

>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins

Probab=98.42  E-value=1.7e-07  Score=64.84  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++|+||||+++++++.+.+..|..
T Consensus        23 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   59 (234)
T cd03251          23 LDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI   59 (234)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEE
Confidence            4577899999999999999999999999998877743

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein

Probab=98.42  E-value=1.5e-07  Score=64.33  Aligned_cols=37  Identities=27%  Similarity=0.513  Sum_probs=33.3

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ++...+|++++|.|++|+||||+++++++.+.+..|+
T Consensus        18 s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   54 (213)
T TIGR01277        18 DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGS   54 (213)
T ss_pred             EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            3667899999999999999999999999999887774

This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.

>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.42  E-value=1.5e-07  Score=67.26  Aligned_cols=36  Identities=19%  Similarity=0.281  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~   63 (286)
T PRK13646         28 TEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGT   63 (286)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            557889999999999999999999999999888774

>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional

Probab=98.42  E-value=1.5e-07  Score=65.73  Aligned_cols=36  Identities=31%  Similarity=0.337  Sum_probs=32.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|+||+||||+++++++.+.+..|.
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   59 (250)
T PRK11264         24 LEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT   59 (250)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            457789999999999999999999999998877664

>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1)

Probab=98.42  E-value=1.9e-07  Score=63.55  Aligned_cols=37  Identities=19%  Similarity=0.355  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++++.+..|..
T Consensus        29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   65 (207)
T cd03369          29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKI   65 (207)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeE
Confidence            4578899999999999999999999999998877754

NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=98.41  E-value=1.4e-07  Score=61.10  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|.|++|+||||+++.+.+++.+..|..
T Consensus        21 ~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i   57 (144)
T cd03221          21 LTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV   57 (144)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence            5578899999999999999999999999998777643

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed

Probab=98.41  E-value=1.6e-07  Score=66.05  Aligned_cols=36  Identities=19%  Similarity=0.401  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|+||+||||+++++++.+.+.+|.
T Consensus        25 ~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~   60 (251)
T PRK09544         25 LELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGV   60 (251)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            557889999999999999999999999999887764

>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional

Probab=98.41  E-value=1.5e-07  Score=66.63  Aligned_cols=36  Identities=28%  Similarity=0.378  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++.+.+..|.
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   63 (269)
T PRK11831         28 LTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGE   63 (269)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            557889999999999999999999999999887764

>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.41  E-value=2.1e-08  Score=69.94  Aligned_cols=37  Identities=22%  Similarity=0.375  Sum_probs=34.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++++||+|+||||+++.+.+++.+.+|..
T Consensus        25 l~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v   61 (250)
T COG0411          25 LEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTV   61 (250)
T ss_pred             EEEcCCeEEEEECCCCCCceeeeeeecccccCCCceE
Confidence            5578899999999999999999999999999998865

>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=1.5e-07  Score=65.90  Aligned_cols=36  Identities=19%  Similarity=0.389  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|+||+||||+++++++++.+..|.
T Consensus        26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~   61 (255)
T PRK11300         26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGT   61 (255)
T ss_pred             eEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcce
Confidence            456789999999999999999999999999888774

>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=1.6e-07  Score=66.55  Aligned_cols=36  Identities=25%  Similarity=0.327  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++++++.+.+.+|.
T Consensus        30 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~   65 (269)
T PRK13648         30 FNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE   65 (269)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            457889999999999999999999999999887764

>cd03290 ABCC_SUR1_N The SUR domain 1

Probab=98.41  E-value=1.8e-07  Score=64.11  Aligned_cols=37  Identities=16%  Similarity=0.318  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++.+.+..|..
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   58 (218)
T cd03290          22 IRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKV   58 (218)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE
Confidence            5577899999999999999999999999998777643

The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit

Probab=98.41  E-value=1.6e-07  Score=64.65  Aligned_cols=36  Identities=25%  Similarity=0.383  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++++++.+.+..|.
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   56 (223)
T TIGR03740        21 LTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGE   56 (223)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            557889999999999999999999999998877774

Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.

>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.41  E-value=1.7e-07  Score=66.42  Aligned_cols=36  Identities=25%  Similarity=0.416  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++++.+..|.
T Consensus        30 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   65 (271)
T PRK13632         30 FEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGE   65 (271)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            457889999999999999999999999999887774

>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules

Probab=98.41  E-value=1.9e-07  Score=64.36  Aligned_cols=36  Identities=22%  Similarity=0.395  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++++++.+.+..|.
T Consensus        35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~   70 (226)
T cd03248          35 FTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQ   70 (226)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcE
Confidence            457889999999999999999999999999887774

Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.41  E-value=1.5e-07  Score=65.49  Aligned_cols=48  Identities=21%  Similarity=0.304  Sum_probs=38.1

Q ss_pred             eeeehhhhhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          25 LFAIGSAAYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        25 iy~~~~~~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      .|.....+..+  +.+.++|.++|+|+||+||||++|++.++..+..|..
T Consensus        12 ~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i   61 (258)
T COG3638          12 TYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI   61 (258)
T ss_pred             ecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceE
Confidence            44444445554  4478899999999999999999999999888887753

>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional

Probab=98.40  E-value=1.6e-07  Score=66.41  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |...++++++|+|+||+||||+++++++.+.+..|..
T Consensus        32 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   68 (265)
T PRK10575         32 LTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEI   68 (265)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEE
Confidence            5578899999999999999999999999988777753

>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C

Probab=98.40  E-value=1.9e-07  Score=64.01  Aligned_cols=37  Identities=22%  Similarity=0.282  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++...+..|..
T Consensus        25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i   61 (221)
T cd03244          25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSI   61 (221)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEE
Confidence            5578899999999999999999999999988887754

This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.

>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.40  E-value=1.7e-07  Score=67.12  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus        28 ~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i   64 (287)
T PRK13637         28 IEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKI   64 (287)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEE
Confidence            5578899999999999999999999999998877743

>PRK13536 nodulation factor exporter subunit NodI; Provisional

Probab=98.40  E-value=1.8e-07  Score=68.61  Aligned_cols=36  Identities=11%  Similarity=0.327  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      |.+.+|++++|+|+||+||||+++++++++.+.+|.
T Consensus        62 ~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~   97 (340)
T PRK13536         62 FTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGK   97 (340)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceE
Confidence            446789999999999999999999999999888774

>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.40  E-value=1.7e-07  Score=66.62  Aligned_cols=37  Identities=16%  Similarity=0.233  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+||+||||+++++++++.+..|..
T Consensus        23 l~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i   59 (275)
T PRK13639         23 FKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV   59 (275)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence            5578999999999999999999999999998877743

>PRK10851 sulfate/thiosulfate transporter subunit; Provisional

Probab=98.40  E-value=1.7e-07  Score=69.02  Aligned_cols=37  Identities=27%  Similarity=0.356  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|+|||||||++++|++++.+.+|..
T Consensus        23 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I   59 (353)
T PRK10851         23 LDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI   59 (353)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            5578899999999999999999999999998887753

>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]

Probab=98.40  E-value=2e-07  Score=65.13  Aligned_cols=38  Identities=21%  Similarity=0.272  Sum_probs=34.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      |...+|+.++|+|++||||||++|++.+.+.|..|...
T Consensus        48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~   85 (249)
T COG1134          48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK   85 (249)
T ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEE
Confidence            55789999999999999999999999999999988653

>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD

Probab=98.40  E-value=1.8e-07  Score=64.70  Aligned_cols=37  Identities=27%  Similarity=0.401  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh----hCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA----VNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~----~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++.+.+    ..|..
T Consensus         7 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i   47 (230)
T TIGR02770         7 LSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEI   47 (230)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEE
Confidence            55778999999999999999999999999987    56643

This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.

>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional

Probab=98.40  E-value=1.5e-07  Score=69.36  Aligned_cols=37  Identities=22%  Similarity=0.355  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+|||||||++++|+++..+.+|..
T Consensus        25 l~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I   61 (356)
T PRK11650         25 LDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI   61 (356)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE
Confidence            5578899999999999999999999999998887743

>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein

Probab=98.40  E-value=1.8e-07  Score=65.32  Aligned_cols=33  Identities=30%  Similarity=0.377  Sum_probs=30.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +...+|++++|+|+||+||||+++++++.+.+.
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~   54 (247)
T TIGR00972        22 LDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLV   54 (247)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            557889999999999999999999999999775

This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.

>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=1.7e-07  Score=66.99  Aligned_cols=36  Identities=19%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+||+||||+++++++.+.+.+|.
T Consensus        28 l~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~   63 (287)
T PRK13641         28 FELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGT   63 (287)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence            557899999999999999999999999999888774

>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria

Probab=98.39  E-value=2.1e-07  Score=64.43  Aligned_cols=37  Identities=27%  Similarity=0.455  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++|+||||+++++.+.+.+..|..
T Consensus        22 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v   58 (236)
T cd03253          22 FTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI   58 (236)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE
Confidence            5577899999999999999999999999998887743

Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=1.6e-07  Score=65.12  Aligned_cols=37  Identities=22%  Similarity=0.253  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++|+||||+++++.+.+.+.+|..
T Consensus        26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i   62 (237)
T PRK11614         26 LHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRI   62 (237)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceE
Confidence            5578899999999999999999999999998877743

>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=1.9e-07  Score=66.36  Aligned_cols=37  Identities=22%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+||+||||+++++++++.+..|..
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   59 (274)
T PRK13644         23 LVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV   59 (274)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            4578899999999999999999999999998877743

>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=1.8e-07  Score=68.18  Aligned_cols=37  Identities=19%  Similarity=0.337  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|+|||||||+++++++++.+.+|..
T Consensus        36 l~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i   72 (327)
T PRK11308         36 FTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGEL   72 (327)
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEE
Confidence            5578899999999999999999999999998776643

>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=1.9e-07  Score=66.52  Aligned_cols=37  Identities=24%  Similarity=0.343  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   64 (279)
T PRK13650         28 FHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI   64 (279)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            5578999999999999999999999999998887743

>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional

Probab=98.39  E-value=1.6e-07  Score=68.83  Aligned_cols=37  Identities=16%  Similarity=0.250  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|+|||||||+++++++++.+.+|..
T Consensus        26 l~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I   62 (343)
T PRK11153         26 LHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRV   62 (343)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence            5578999999999999999999999999998877743

>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export

Probab=98.39  E-value=1.7e-07  Score=64.81  Aligned_cols=36  Identities=14%  Similarity=0.292  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++++++.+.+..|.
T Consensus        43 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~   78 (224)
T cd03220          43 FEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGT   78 (224)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            557899999999999999999999999998877664

Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.

>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=2e-07  Score=68.60  Aligned_cols=37  Identities=27%  Similarity=0.344  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+|||||||++++|+++..+..|..
T Consensus        27 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I   63 (351)
T PRK11432         27 LTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI   63 (351)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEE
Confidence            5578899999999999999999999999999887753

>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=2e-07  Score=66.32  Aligned_cols=37  Identities=14%  Similarity=0.143  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+|||||||+++++++++.+.+|..
T Consensus        26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   62 (274)
T PRK13647         26 LSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV   62 (274)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE
Confidence            4578899999999999999999999999998877743

>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein

Probab=98.38  E-value=1.8e-07  Score=68.87  Aligned_cols=37  Identities=22%  Similarity=0.322  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+|||||||++++|+++..+.+|+.
T Consensus        25 ~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I   61 (353)
T TIGR03265        25 LSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTI   61 (353)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEE
Confidence            5567899999999999999999999999998887743

This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.

>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=2.2e-07  Score=66.26  Aligned_cols=37  Identities=27%  Similarity=0.343  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|++|+||||+++++++.+.+.+|..
T Consensus        28 l~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i   64 (279)
T PRK13635         28 FSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI   64 (279)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence            5578899999999999999999999999998887743

>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=2e-07  Score=66.29  Aligned_cols=37  Identities=19%  Similarity=0.281  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+||+||||+++++++.+.+.+|..
T Consensus        25 l~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i   61 (277)
T PRK13652         25 FIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV   61 (277)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            4578899999999999999999999999998887753

>PRK13651 cobalt transporter ATP-binding subunit; Provisional

Probab=98.38  E-value=2.1e-07  Score=67.26  Aligned_cols=37  Identities=22%  Similarity=0.320  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++.+++.+..|..
T Consensus        28 l~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i   64 (305)
T PRK13651         28 VEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTI   64 (305)
T ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence            5578899999999999999999999999998887753

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=98.38  E-value=2e-07  Score=71.59  Aligned_cols=37  Identities=24%  Similarity=0.379  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|+|||||||+.|+++++..+.+|..
T Consensus       312 f~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i  348 (539)
T COG1123         312 FDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSI  348 (539)
T ss_pred             eEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4578999999999999999999999999999977654

>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor

Probab=98.38  E-value=2.7e-07  Score=64.73  Aligned_cols=35  Identities=29%  Similarity=0.333  Sum_probs=31.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ..++++++|+|+||+||||+++++++.+.+..|..
T Consensus        22 i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i   56 (246)
T cd03237          22 ISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDI   56 (246)
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence            45799999999999999999999999998887754

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional

Probab=98.37  E-value=2.1e-07  Score=68.03  Aligned_cols=37  Identities=22%  Similarity=0.376  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|+|||||||++++|++++.+.+|..
T Consensus        42 l~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I   78 (331)
T PRK15079         42 LRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEV   78 (331)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEE
Confidence            5578999999999999999999999999998877743

>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA

Probab=98.37  E-value=1.9e-07  Score=67.23  Aligned_cols=37  Identities=24%  Similarity=0.431  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |...+|++++|+|++|+||||+++++++++.+..|..
T Consensus        23 ~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i   59 (301)
T TIGR03522        23 FEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV   59 (301)
T ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            5578899999999999999999999999998887743

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.

>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional

Probab=98.37  E-value=2.1e-07  Score=65.39  Aligned_cols=36  Identities=28%  Similarity=0.365  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|+||+||||+++++++++.+.+|+
T Consensus        26 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~   61 (257)
T PRK10619         26 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGS   61 (257)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence            557899999999999999999999999999887774

>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional

Probab=98.37  E-value=1.9e-07  Score=69.10  Aligned_cols=36  Identities=22%  Similarity=0.351  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|+|||||||+++++++++.+.+|.
T Consensus        24 l~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~   59 (369)
T PRK11000         24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD   59 (369)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            457789999999999999999999999999887774

>TIGR01978 sufC FeS assembly ATPase SufC

Probab=98.37  E-value=2.3e-07  Score=64.48  Aligned_cols=36  Identities=22%  Similarity=0.341  Sum_probs=30.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~   71 (114)
                      +...+|++++|+|+|||||||+++++++++  .+..|.
T Consensus        21 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~   58 (243)
T TIGR01978        21 LTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGT   58 (243)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcce
Confidence            557889999999999999999999999985  455553

SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.

>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.37  E-value=2.1e-07  Score=65.95  Aligned_cols=36  Identities=22%  Similarity=0.326  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++.+.+..|.
T Consensus        45 ~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~   80 (264)
T PRK13546         45 LKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGK   80 (264)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            557899999999999999999999999998887764

>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional

Probab=98.37  E-value=2.3e-07  Score=65.16  Aligned_cols=37  Identities=19%  Similarity=0.333  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++.+.+..|..
T Consensus        23 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   59 (255)
T PRK11231         23 LSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTV   59 (255)
T ss_pred             eEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEE
Confidence            5578899999999999999999999999988877743

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=98.37  E-value=2e-07  Score=63.54  Aligned_cols=36  Identities=17%  Similarity=0.268  Sum_probs=31.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++ +++|+|+||+||||+++++.+++.+..|+.
T Consensus        21 ~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   56 (211)
T cd03264          21 LTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI   56 (211)
T ss_pred             EEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEE
Confidence            456678 999999999999999999999998877643

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2.8e-07  Score=62.27  Aligned_cols=37  Identities=19%  Similarity=0.346  Sum_probs=33.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +....++.+.|.|++|+||||++|++.+++.+.+|+.
T Consensus        23 f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v   59 (209)
T COG4133          23 FTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEV   59 (209)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeE
Confidence            4467899999999999999999999999999998865

>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional

Probab=98.37  E-value=2.2e-07  Score=65.63  Aligned_cols=37  Identities=14%  Similarity=0.299  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++|+||||+++++++.+.+..|..
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i   64 (265)
T PRK10253         28 VEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHV   64 (265)
T ss_pred             eEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEE
Confidence            5578899999999999999999999999998877743

>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors

Probab=98.36  E-value=2.3e-07  Score=63.99  Aligned_cols=36  Identities=31%  Similarity=0.387  Sum_probs=31.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh---hhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA---AVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~---~~~g~   71 (114)
                      +...++++++|+|+||+||||+++++.+.+.   +.+|.
T Consensus        28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~   66 (226)
T cd03234          28 LHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQ   66 (226)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceE
Confidence            4578899999999999999999999999987   56553

The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in

>PRK11144 modC molybdate transporter ATP-binding protein; Provisional

Probab=98.36  E-value=2.2e-07  Score=68.37  Aligned_cols=37  Identities=22%  Similarity=0.290  Sum_probs=33.0

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ++...++++++|+|+|||||||+++++++++.+..|.
T Consensus        18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~   54 (352)
T PRK11144         18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGR   54 (352)
T ss_pred             EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            3567889999999999999999999999999887764

>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein

Probab=98.36  E-value=2.5e-07  Score=64.32  Aligned_cols=36  Identities=22%  Similarity=0.338  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++.+++.+.+.+|+
T Consensus        21 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~   56 (237)
T TIGR00968        21 LEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGR   56 (237)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            557899999999999999999999999998877664

>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB

Probab=98.36  E-value=2.4e-07  Score=63.37  Aligned_cols=36  Identities=19%  Similarity=0.240  Sum_probs=32.0

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ++...+ ++++|+|++|+||||+++++++++.+..|.
T Consensus        18 sl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~   53 (214)
T cd03297          18 DFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGT   53 (214)
T ss_pred             eEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            366778 999999999999999999999999877764

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein

Probab=98.36  E-value=2.4e-07  Score=65.08  Aligned_cols=36  Identities=19%  Similarity=0.291  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++.+.+..|.
T Consensus        22 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~   57 (256)
T TIGR03873        22 VTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT   57 (256)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCE
Confidence            457889999999999999999999999999887774

This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.

>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=2.5e-07  Score=66.26  Aligned_cols=36  Identities=19%  Similarity=0.293  Sum_probs=32.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|++|+||||+++++.+.+.+.+|.
T Consensus        27 l~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~   62 (288)
T PRK13643         27 LEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGK   62 (288)
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence            557899999999999999999999999999888774

>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit

Probab=98.36  E-value=3.1e-07  Score=63.36  Aligned_cols=36  Identities=14%  Similarity=0.350  Sum_probs=31.6

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ...+|++++|+|++||||||+++++.+...+.+|..
T Consensus         2 ~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i   37 (223)
T TIGR03771         2 SADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTV   37 (223)
T ss_pred             ccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            356799999999999999999999999988877743

This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.

>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.36  E-value=2.7e-07  Score=67.11  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=35.0

Q ss_pred             hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ++++  +.+.+|++++|+|++||||||+++++++++.+.+|..
T Consensus        41 ~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I   83 (320)
T PRK13631         41 ALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTI   83 (320)
T ss_pred             ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence            4554  4468899999999999999999999999998887743

>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor

Probab=98.35  E-value=3.2e-07  Score=64.73  Aligned_cols=41  Identities=22%  Similarity=0.238  Sum_probs=34.8

Q ss_pred             hhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          32 AYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        32 ~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+. ..++++++|+|+||+||||+++++++++.+..|..
T Consensus        16 ~l~~i~~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I   57 (255)
T cd03236          16 KLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKF   57 (255)
T ss_pred             hhhcCCCCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceE
Confidence            334443 56899999999999999999999999999888865

The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed

Probab=98.35  E-value=2.2e-07  Score=68.93  Aligned_cols=37  Identities=22%  Similarity=0.373  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|.|+|||||||++++|++++.+..|..
T Consensus        35 l~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I   71 (375)
T PRK09452         35 LTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI   71 (375)
T ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEE
Confidence            4577899999999999999999999999998877643

>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein

Probab=98.35  E-value=2.4e-07  Score=67.98  Aligned_cols=37  Identities=24%  Similarity=0.278  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+|||||||+++++.+++.+.+|..
T Consensus        26 l~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I   62 (343)
T TIGR02314        26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSV   62 (343)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            5578899999999999999999999999999887753

Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.

>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.35  E-value=2.6e-07  Score=62.93  Aligned_cols=36  Identities=19%  Similarity=0.263  Sum_probs=31.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh---hhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA---AVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~---~~~g~   71 (114)
                      +...++++++|+|++||||||+++++.+++.   +.+|.
T Consensus        28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~   66 (202)
T cd03233          28 GVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGD   66 (202)
T ss_pred             EEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceE
Confidence            4578899999999999999999999999988   55664

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.35  E-value=3.1e-07  Score=63.38  Aligned_cols=37  Identities=24%  Similarity=0.293  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +....|++.+|+||||+||||+++.+.+.+.+.+|..
T Consensus        22 l~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v   58 (259)
T COG4559          22 LDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV   58 (259)
T ss_pred             eeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeE
Confidence            4467899999999999999999999999999888754

>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional

Probab=98.35  E-value=2.8e-07  Score=65.32  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++++++...+.+|.
T Consensus        33 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~   68 (268)
T PRK10419         33 LSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN   68 (268)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            557889999999999999999999999998887774

>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein

Probab=98.35  E-value=2.4e-07  Score=68.13  Aligned_cols=37  Identities=30%  Similarity=0.399  Sum_probs=33.0

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ++...+|++++|+|+|||||||+++++++++.+..|.
T Consensus        17 sl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~   53 (354)
T TIGR02142        17 DFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGE   53 (354)
T ss_pred             EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            3567889999999999999999999999999887764

This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.

>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.34  E-value=2.8e-07  Score=66.03  Aligned_cols=37  Identities=22%  Similarity=0.324  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+||+||||+++++.+.+.+..|..
T Consensus        28 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   64 (290)
T PRK13634         28 VSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTV   64 (290)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence            4578999999999999999999999999998877743

>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.33  E-value=3e-07  Score=65.64  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++++.+..|.
T Consensus        27 ~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~   62 (283)
T PRK13636         27 INIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGR   62 (283)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccE
Confidence            557889999999999999999999999999887774

>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]

Probab=98.33  E-value=2.4e-07  Score=64.20  Aligned_cols=37  Identities=24%  Similarity=0.383  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++++|+||+||||+++.|+++..+.+|+.
T Consensus        24 l~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I   60 (237)
T COG0410          24 LEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI   60 (237)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeE
Confidence            5578899999999999999999999999999887654

>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR)

Probab=98.33  E-value=3e-07  Score=62.20  Aligned_cols=37  Identities=19%  Similarity=0.199  Sum_probs=32.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++.+  .+..|..
T Consensus        30 ~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i   68 (194)
T cd03213          30 GKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEV   68 (194)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEE
Confidence            457889999999999999999999999998  7777643

DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.

>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit

Probab=98.33  E-value=3e-07  Score=70.60  Aligned_cols=37  Identities=30%  Similarity=0.351  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +..++|+.++|+|+|||||||+++.+++++.+..|+.
T Consensus       356 l~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I  392 (529)
T TIGR02868       356 LDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEV  392 (529)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            4468899999999999999999999999999988765

The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=98.33  E-value=2.9e-07  Score=68.83  Aligned_cols=37  Identities=30%  Similarity=0.452  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.++++++|+|+|||||||+++++.+++.+.+|..
T Consensus        49 l~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I   85 (400)
T PRK10070         49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQV   85 (400)
T ss_pred             EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEE
Confidence            5578899999999999999999999999998887743

>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional

Probab=98.33  E-value=3.5e-07  Score=64.22  Aligned_cols=36  Identities=28%  Similarity=0.376  Sum_probs=31.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh----hCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA----VNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~----~~g~   71 (114)
                      +...+|++++|+|+||+||||+++++.+.+.+    ..|.
T Consensus        24 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~   63 (254)
T PRK10418         24 LTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGR   63 (254)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCE
Confidence            55788999999999999999999999999887    5554

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=98.33  E-value=2.7e-07  Score=68.18  Aligned_cols=37  Identities=27%  Similarity=0.438  Sum_probs=33.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|+|||||||+++++.+++.+.+|..
T Consensus        14 ~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I   50 (363)
T TIGR01186        14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQI   50 (363)
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEE
Confidence            5678999999999999999999999999999887743

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.32  E-value=3.7e-07  Score=69.57  Aligned_cols=37  Identities=19%  Similarity=0.291  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+|||||||+++++++.+.+..|..
T Consensus        24 l~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i   60 (490)
T PRK10938         24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGER   60 (490)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceE
Confidence            5578899999999999999999999999998877754

>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1

Probab=98.32  E-value=3.6e-07  Score=65.41  Aligned_cols=36  Identities=28%  Similarity=0.446  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      |...+|++++|+|++|+||||+++++++.+.+..|+
T Consensus        58 ~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~   93 (282)
T cd03291          58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGK   93 (282)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            446889999999999999999999999998887774

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13633 cobalt transporter ATP-binding subunit; Provisional

Probab=98.32  E-value=3.5e-07  Score=65.16  Aligned_cols=37  Identities=27%  Similarity=0.369  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|++|+||||+++++.+.+.+..|..
T Consensus        31 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i   67 (280)
T PRK13633         31 LEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKV   67 (280)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            5578899999999999999999999999998887743

>cd03288 ABCC_SUR2 The SUR domain 2

Probab=98.32  E-value=4.3e-07  Score=63.90  Aligned_cols=37  Identities=22%  Similarity=0.254  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|++|+||||+++++++++.+..|+.
T Consensus        42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i   78 (257)
T cd03288          42 AYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKI   78 (257)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeE
Confidence            4578999999999999999999999999998877753

The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.

>PRK14242 phosphate transporter ATP-binding protein; Provisional

Probab=98.31  E-value=4.5e-07  Score=63.50  Aligned_cols=31  Identities=29%  Similarity=0.377  Sum_probs=28.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +...+|++++|+|+||+||||++++++++..
T Consensus        27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (253)
T PRK14242         27 LEFEQNQVTALIGPSGCGKSTFLRCLNRMND   57 (253)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4578899999999999999999999999864

>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional

Probab=98.31  E-value=3.1e-07  Score=68.20  Aligned_cols=36  Identities=17%  Similarity=0.351  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.++++++|.|+|||||||++++|+++..+..|.
T Consensus        40 l~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~   75 (377)
T PRK11607         40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQ   75 (377)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            457789999999999999999999999999888774

>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional

Probab=98.31  E-value=3.6e-07  Score=65.00  Aligned_cols=33  Identities=24%  Similarity=0.331  Sum_probs=30.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +.+.+|++++|+|+||+||||+++++++.+.+.
T Consensus        22 l~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~   54 (272)
T PRK13547         22 LRIEPGRVTALLGRNGAGKSTLLKALAGDLTGG   54 (272)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCc
Confidence            557889999999999999999999999998775

>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed

Probab=98.31  E-value=3.5e-07  Score=68.45  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|+||+||||+++++.+++.+.+|..
T Consensus        24 ~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I   60 (402)
T PRK09536         24 LSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV   60 (402)
T ss_pred             EEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE
Confidence            5578999999999999999999999999998887743

>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family

Probab=98.31  E-value=4.2e-07  Score=62.49  Aligned_cols=37  Identities=30%  Similarity=0.407  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++|+||||+++.+.+++.+.+|..
T Consensus        26 ~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i   62 (220)
T TIGR02982        26 LEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSL   62 (220)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            4567899999999999999999999999988877743

Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.

>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=4.3e-07  Score=64.62  Aligned_cols=37  Identities=22%  Similarity=0.382  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++|+||||+++++.+++.+.+|..
T Consensus        28 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i   64 (277)
T PRK13642         28 FSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV   64 (277)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence            4578899999999999999999999999998887743

>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.30  E-value=4.4e-07  Score=63.56  Aligned_cols=32  Identities=28%  Similarity=0.389  Sum_probs=29.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|+||+||||+++++++.+.+
T Consensus        25 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~   56 (253)
T PRK14267         25 LKIPQNGVFALMGPSGCGKSTLLRTFNRLLEL   56 (253)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCc
Confidence            55788999999999999999999999999875

>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional

Probab=98.30  E-value=4.6e-07  Score=64.68  Aligned_cols=34  Identities=24%  Similarity=0.382  Sum_probs=31.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~   69 (114)
                      +.+.+|++++|+|++|+||||+++++++++.+..
T Consensus        28 l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~   61 (282)
T PRK13640         28 FSIPRGSWTALIGHNGSGKSTISKLINGLLLPDD   61 (282)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCC
Confidence            5578899999999999999999999999997765

>cd03299 ABC_ModC_like Archeal protein closely related to ModC

Probab=98.30  E-value=4.2e-07  Score=63.13  Aligned_cols=36  Identities=22%  Similarity=0.352  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++++.+.+.+..|.
T Consensus        20 ~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~   55 (235)
T cd03299          20 LEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGK   55 (235)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence            457889999999999999999999999998887774

ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14235 phosphate transporter ATP-binding protein; Provisional

Probab=98.30  E-value=5.3e-07  Score=63.83  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=29.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +.+.+|++++|+|+||+||||+++++.+.+.+
T Consensus        40 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   71 (267)
T PRK14235         40 LDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDT   71 (267)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence            44688999999999999999999999999864

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=98.29  E-value=4e-07  Score=67.76  Aligned_cols=37  Identities=27%  Similarity=0.305  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|+|||||||+++++.+++.+.+|+.
T Consensus        45 f~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I   81 (382)
T TIGR03415        45 LDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSV   81 (382)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence            5578999999999999999999999999998887743

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]

Probab=98.29  E-value=4.4e-07  Score=72.07  Aligned_cols=38  Identities=29%  Similarity=0.347  Sum_probs=34.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      +...+||.++|+|+|||||||++|++.++..+..|...
T Consensus       494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~  531 (709)
T COG2274         494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRIL  531 (709)
T ss_pred             EEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence            44788999999999999999999999999999988753

>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D

Probab=98.29  E-value=5.1e-07  Score=62.56  Aligned_cols=36  Identities=22%  Similarity=0.382  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++.+.+..|.
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~   56 (232)
T cd03300          21 LDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGE   56 (232)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence            456789999999999999999999999999887764

PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK14238 phosphate transporter ATP-binding protein; Provisional

Probab=98.29  E-value=5.9e-07  Score=63.72  Aligned_cols=31  Identities=32%  Similarity=0.463  Sum_probs=28.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +...+|++++|+|+||+||||+++++++.+.
T Consensus        45 l~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~   75 (271)
T PRK14238         45 LDIHENEVTAIIGPSGCGKSTYIKTLNRMVE   75 (271)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4468899999999999999999999999986

>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional

Probab=98.29  E-value=5.3e-07  Score=63.51  Aligned_cols=31  Identities=29%  Similarity=0.392  Sum_probs=28.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +...+|++++|+|+||+||||+++++++.+.
T Consensus        34 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   64 (260)
T PRK10744         34 LDIAKNQVTAFIGPSGCGKSTLLRTFNRMYE   64 (260)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4578899999999999999999999999975

>PRK14241 phosphate transporter ATP-binding protein; Provisional

Probab=98.28  E-value=4.4e-07  Score=63.80  Aligned_cols=32  Identities=22%  Similarity=0.317  Sum_probs=29.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|+|||||||+++++.+.+.+
T Consensus        25 l~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~   56 (258)
T PRK14241         25 LNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEV   56 (258)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence            55788999999999999999999999999863

>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.28  E-value=5.8e-07  Score=63.57  Aligned_cols=31  Identities=19%  Similarity=0.325  Sum_probs=27.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +...+|++++|+|+||+||||++++++++..
T Consensus        42 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   72 (268)
T PRK14248         42 MDIEKHAVTALIGPSGCGKSTFLRSINRMND   72 (268)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            4467899999999999999999999999764

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.28  E-value=4.2e-07  Score=69.51  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |...+|++++|+|+|||||||+++++++++.+..|..
T Consensus        25 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i   61 (501)
T PRK10762         25 LNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI   61 (501)
T ss_pred             EEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            4577899999999999999999999999998877753

>PRK11176 lipid transporter ATP-binding/permease protein; Provisional

Probab=98.28  E-value=5.8e-07  Score=69.68  Aligned_cols=37  Identities=22%  Similarity=0.396  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +..++|+.++|+|+||+||||+++++++++.+..|..
T Consensus       364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I  400 (582)
T PRK11176        364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEI  400 (582)
T ss_pred             EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceE
Confidence            3467899999999999999999999999999988754

>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT

Probab=98.27  E-value=4.9e-07  Score=66.82  Aligned_cols=36  Identities=22%  Similarity=0.446  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC--CC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVN--KS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~--g~   71 (114)
                      +.+.++++++|+|+|||||||++++++++..+.+  |.
T Consensus        26 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~   63 (362)
T TIGR03258        26 LEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGR   63 (362)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEE
Confidence            4567899999999999999999999999998887  64

This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.

>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=6e-07  Score=63.64  Aligned_cols=31  Identities=19%  Similarity=0.287  Sum_probs=28.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      |.+.+|++++|+|+|||||||+++++++++.
T Consensus        34 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   64 (269)
T PRK14259         34 CDIPRGKVTALIGPSGCGKSTVLRSLNRMND   64 (269)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4578899999999999999999999999875

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.27  E-value=5e-07  Score=69.95  Aligned_cols=37  Identities=14%  Similarity=0.172  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++.+.+..|..
T Consensus        28 ~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i   64 (556)
T PRK11819         28 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEA   64 (556)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4578899999999999999999999999998877753

>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.27  E-value=5.7e-07  Score=62.86  Aligned_cols=32  Identities=28%  Similarity=0.344  Sum_probs=29.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|++|+||||+++++++++.+
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~   55 (250)
T PRK14262         24 MKIFKNQITAIIGPSGCGKTTLLRSINRMNDH   55 (250)
T ss_pred             EeecCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence            55788999999999999999999999998763

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.27  E-value=4.9e-07  Score=69.23  Aligned_cols=37  Identities=16%  Similarity=0.232  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus       284 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I  320 (510)
T PRK09700        284 FSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEI  320 (510)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeE
Confidence            3467899999999999999999999999998777654

>CHL00131 ycf16 sulfate ABC transporter protein; Validated

Probab=98.26  E-value=5.1e-07  Score=63.15  Aligned_cols=36  Identities=22%  Similarity=0.393  Sum_probs=30.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHH--hhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQY--LAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~--~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++.  +.+..|.
T Consensus        28 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~   65 (252)
T CHL00131         28 LSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGD   65 (252)
T ss_pred             eEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCce
Confidence            55788999999999999999999999997  3455553

>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.26  E-value=6.4e-07  Score=62.61  Aligned_cols=32  Identities=25%  Similarity=0.452  Sum_probs=29.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...++++++|+|++||||||+++++.+.+.+
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~   55 (250)
T PRK14247         24 LEIPDNTITALMGPSGSGKSTLLRVFNRLIEL   55 (250)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            55788999999999999999999999999864

>PRK09700 D-allose transporter ATP-binding protein; Provisional

Probab=98.26  E-value=4.6e-07  Score=69.38  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+|||||||+++++++++.+..|..
T Consensus        26 ~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i   62 (510)
T PRK09700         26 LTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTI   62 (510)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEE
Confidence            4578899999999999999999999999998877643

>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.26  E-value=6.4e-07  Score=62.64  Aligned_cols=31  Identities=19%  Similarity=0.315  Sum_probs=28.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +...+|++++|+|++|+||||+++++++.+.
T Consensus        25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (251)
T PRK14251         25 LDFEEKELTALIGPSGCGKSTFLRCLNRMND   55 (251)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence            5578899999999999999999999999985

>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional

Probab=98.26  E-value=5.5e-07  Score=65.74  Aligned_cols=33  Identities=36%  Similarity=0.478  Sum_probs=30.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      |.+.+|++++|+|+|||||||+++++++++.+.
T Consensus        37 l~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~   69 (330)
T PRK09473         37 FSLRAGETLGIVGESGSGKSQTAFALMGLLAAN   69 (330)
T ss_pred             EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCC
Confidence            557889999999999999999999999999764

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.26  E-value=5.5e-07  Score=69.28  Aligned_cols=36  Identities=19%  Similarity=0.272  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus        22 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~   57 (530)
T PRK15064         22 VKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGN   57 (530)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            557889999999999999999999999999877664

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.26  E-value=5e-07  Score=71.07  Aligned_cols=36  Identities=25%  Similarity=0.299  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      |.+.+|++++|+|+|||||||+++++++.+.+..|.
T Consensus        22 ~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~   57 (638)
T PRK10636         22 ATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGS   57 (638)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            557889999999999999999999999998887764

>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.26  E-value=6.4e-07  Score=62.80  Aligned_cols=32  Identities=19%  Similarity=0.301  Sum_probs=29.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|+||+||||+++++++.+.+
T Consensus        28 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   59 (254)
T PRK14273         28 IKILKNSITALIGPSGCGKSTFLRTLNRMNDL   59 (254)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhccccC
Confidence            45788999999999999999999999999875

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.25  E-value=5.5e-07  Score=70.62  Aligned_cols=36  Identities=28%  Similarity=0.410  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      |.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus        37 ~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~   72 (623)
T PRK10261         37 FSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGL   72 (623)
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeE
Confidence            457889999999999999999999999999877664

>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.25  E-value=6.9e-07  Score=62.96  Aligned_cols=35  Identities=26%  Similarity=0.419  Sum_probs=31.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      +...++++++|+|++|+||||+++++.+...+..|
T Consensus        31 ~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G   65 (257)
T PRK14246         31 IKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS   65 (257)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence            45678999999999999999999999999887764

>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional

Probab=98.25  E-value=5.8e-07  Score=65.50  Aligned_cols=32  Identities=34%  Similarity=0.464  Sum_probs=29.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      |.+.+|++++|+|+|||||||+++.+++++.+
T Consensus        28 l~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~   59 (326)
T PRK11022         28 YSVKQGEVVGIVGESGSGKSVSSLAIMGLIDY   59 (326)
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCCCC
Confidence            55789999999999999999999999999863

>PRK14237 phosphate transporter ATP-binding protein; Provisional

Probab=98.25  E-value=7.2e-07  Score=63.14  Aligned_cols=31  Identities=23%  Similarity=0.364  Sum_probs=28.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      |...+|++++|+|++||||||+++++.+.+.
T Consensus        41 l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   71 (267)
T PRK14237         41 MQFEKNKITALIGPSGSGKSTYLRSLNRMND   71 (267)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence            4467899999999999999999999999985

>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional

Probab=98.25  E-value=6.8e-07  Score=65.20  Aligned_cols=31  Identities=26%  Similarity=0.368  Sum_probs=28.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      |.+.+|++++|+|+|||||||+++++++++.
T Consensus        28 l~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~   58 (330)
T PRK15093         28 MTLTEGEIRGLVGESGSGKSLIAKAICGVTK   58 (330)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence            5578999999999999999999999999986

>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component

Probab=98.25  E-value=6.6e-07  Score=60.78  Aligned_cols=36  Identities=25%  Similarity=0.353  Sum_probs=30.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++.+++..  .+..|+
T Consensus        21 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~   58 (200)
T cd03217          21 LTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE   58 (200)
T ss_pred             eEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccE
Confidence            557889999999999999999999999984  455553

Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.

>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.24  E-value=8.2e-07  Score=62.15  Aligned_cols=32  Identities=22%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|++|+||||+++++++...+
T Consensus        25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~   56 (251)
T PRK14270         25 LPIYENKITALIGPSGCGKSTFLRCLNRMNDL   56 (251)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhccCc
Confidence            45678999999999999999999999998764

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.24  E-value=5.7e-07  Score=68.98  Aligned_cols=37  Identities=16%  Similarity=0.313  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++.+++.+..|..
T Consensus        32 l~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i   68 (510)
T PRK15439         32 FTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL   68 (510)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            4467899999999999999999999999998877653

>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters

Probab=98.24  E-value=6.6e-07  Score=60.42  Aligned_cols=36  Identities=19%  Similarity=0.252  Sum_probs=30.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh--hhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA--AVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~--~~~g~   71 (114)
                      +...++++++|+|++|+||||+++++++...  +..|.
T Consensus        28 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~   65 (192)
T cd03232          28 GYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE   65 (192)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceE
Confidence            5578899999999999999999999998753  44553

PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed

Probab=98.23  E-value=5.8e-07  Score=62.68  Aligned_cols=36  Identities=22%  Similarity=0.280  Sum_probs=30.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~   71 (114)
                      +.+.++++++|+|++|+||||+++++++..  .+..|+
T Consensus        22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~   59 (248)
T PRK09580         22 LEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT   59 (248)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceE
Confidence            557889999999999999999999999985  455553

>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.23  E-value=7.2e-07  Score=62.76  Aligned_cols=32  Identities=22%  Similarity=0.337  Sum_probs=28.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|++|+||||+++++.+++.+
T Consensus        33 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~   64 (258)
T PRK14268         33 MQIPKNSVTALIGPSGCGKSTFIRCLNRMNDL   64 (258)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCc
Confidence            45788999999999999999999999998764

>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.23  E-value=8.3e-07  Score=59.87  Aligned_cols=38  Identities=32%  Similarity=0.325  Sum_probs=34.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      |...++++++|+|||||||||+++.+...+.+..|...
T Consensus        27 F~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~   64 (258)
T COG4107          27 FDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVT   64 (258)
T ss_pred             eeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEE
Confidence            55678999999999999999999999999999988653

>PRK13409 putative ATPase RIL; Provisional

Probab=98.23  E-value=8e-07  Score=69.41  Aligned_cols=52  Identities=21%  Similarity=0.241  Sum_probs=40.0

Q ss_pred             CCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          22 SPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        22 ~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      .-|.|.-...++..+. ..+|++++|+|+||+||||+++++++.+.+..|...
T Consensus        79 ~~~~yg~~~~~L~~l~~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~  131 (590)
T PRK13409         79 PVHRYGVNGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE  131 (590)
T ss_pred             ceEEecCCceeEecCCcCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCcccc
Confidence            4566643222444443 578999999999999999999999999998888754

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=98.23  E-value=1.1e-06  Score=58.95  Aligned_cols=27  Identities=33%  Similarity=0.454  Sum_probs=24.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      +...++++++|.|+|||||||+++.++
T Consensus        16 l~i~~G~~~~l~G~nG~GKSTLl~~il   42 (176)
T cd03238          16 VSIPLNVLVVVTGVSGSGKSTLVNEGL   42 (176)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence            557889999999999999999999875

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein

Probab=98.23  E-value=7.2e-07  Score=70.52  Aligned_cols=37  Identities=30%  Similarity=0.432  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +..++|+.++|+|+|||||||+++.+++++.+..|..
T Consensus       474 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I  510 (686)
T TIGR03797       474 LQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV  510 (686)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            4468899999999999999999999999999988854

Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.22  E-value=6.1e-07  Score=68.41  Aligned_cols=37  Identities=22%  Similarity=0.293  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus        19 ~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i   55 (491)
T PRK10982         19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSI   55 (491)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEE
Confidence            5578899999999999999999999999998877653

>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=98.22  E-value=8.1e-07  Score=57.99  Aligned_cols=36  Identities=22%  Similarity=0.422  Sum_probs=31.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++.+.+.+.+..|.
T Consensus        20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~   55 (157)
T cd00267          20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGE   55 (157)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccE
Confidence            456789999999999999999999999998776663

The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional

Probab=98.22  E-value=7.8e-07  Score=62.69  Aligned_cols=33  Identities=24%  Similarity=0.366  Sum_probs=29.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      |...+|++++|+|++|+||||+++++++.+.+.
T Consensus        25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~   57 (262)
T PRK09984         25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGD   57 (262)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhccCCCC
Confidence            456789999999999999999999999998764

>PRK10261 glutathione transporter ATP-binding protein; Provisional

Probab=98.22  E-value=7.2e-07  Score=69.98  Aligned_cols=37  Identities=19%  Similarity=0.334  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus       345 ~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I  381 (623)
T PRK10261        345 FDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEI  381 (623)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEE
Confidence            3467899999999999999999999999998777654

>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.22  E-value=8.9e-07  Score=61.86  Aligned_cols=31  Identities=19%  Similarity=0.350  Sum_probs=28.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      |...++++++|+|++|+||||+++++++++.
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   53 (246)
T PRK14269         23 MQIEQNKITALIGASGCGKSTFLRCFNRMND   53 (246)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence            5578899999999999999999999999874

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.21  E-value=7.4e-07  Score=68.42  Aligned_cols=37  Identities=27%  Similarity=0.413  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus       305 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i  341 (520)
T TIGR03269       305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEV  341 (520)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            4467899999999999999999999999998776643

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>PRK14240 phosphate transporter ATP-binding protein; Provisional

Probab=98.21  E-value=8.5e-07  Score=61.99  Aligned_cols=31  Identities=29%  Similarity=0.395  Sum_probs=28.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +...++++++|+|+||+||||+++++++...
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~   54 (250)
T PRK14240         24 LDIEENQVTALIGPSGCGKSTFLRTLNRMND   54 (250)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            5578899999999999999999999999765

>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=1.2e-06  Score=61.21  Aligned_cols=32  Identities=25%  Similarity=0.346  Sum_probs=29.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|++|+||||+++++.+...+
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   55 (249)
T PRK14253         24 LPIPARQVTALIGPSGCGKSTLLRCLNRMNDL   55 (249)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhhccc
Confidence            45788999999999999999999999998875

>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]

Probab=98.21  E-value=1e-06  Score=63.62  Aligned_cols=32  Identities=34%  Similarity=0.505  Sum_probs=29.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      |.+.++++++|+||||||||++.+.+++++..
T Consensus        26 ~~i~~GE~lgiVGESGsGKS~~~~aim~llp~   57 (316)
T COG0444          26 FELKKGEILGIVGESGSGKSVLAKAIMGLLPK   57 (316)
T ss_pred             EEEcCCcEEEEEcCCCCCHHHHHHHHHhccCC
Confidence            55789999999999999999999999999973

>PRK10636 putative ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=8.4e-07  Score=69.82  Aligned_cols=37  Identities=27%  Similarity=0.323  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++.+.+..|..
T Consensus       333 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i  369 (638)
T PRK10636        333 LNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEI  369 (638)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeE
Confidence            3467899999999999999999999999998877753

>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=1.3e-06  Score=61.50  Aligned_cols=31  Identities=32%  Similarity=0.457  Sum_probs=28.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      |.+.+|++++|+|++|+||||+++++++.+.
T Consensus        33 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~   63 (259)
T PRK14274         33 LSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ   63 (259)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4577899999999999999999999999886

>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=9.5e-07  Score=61.84  Aligned_cols=33  Identities=24%  Similarity=0.339  Sum_probs=30.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +.+.+|++++|+|++|+||||+++.+++.+.+.
T Consensus        25 ~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~   57 (251)
T PRK14249         25 MDFPERQITAIIGPSGCGKSTLLRALNRMNDIV   57 (251)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCcc
Confidence            457789999999999999999999999998765

>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=9.4e-07  Score=62.43  Aligned_cols=32  Identities=19%  Similarity=0.279  Sum_probs=29.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|++|+||||+++++.+++.+
T Consensus        29 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p   60 (261)
T PRK14263         29 VPIRKNEITGFIGPSGCGKSTVLRSLNRMNDL   60 (261)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHccccc
Confidence            45788999999999999999999999999865

>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.21  E-value=1.1e-06  Score=61.52  Aligned_cols=31  Identities=23%  Similarity=0.281  Sum_probs=28.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.+.+|++++|+|++||||||+++++.+...
T Consensus        26 ~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~   56 (251)
T PRK14244         26 LDIYKREVTAFIGPSGCGKSTFLRCFNRMND   56 (251)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            4577899999999999999999999999875

>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=98.20  E-value=9.9e-07  Score=59.91  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |...++|.++++|++||||||+.+++.+.+.+.+|..
T Consensus        34 FtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~i   70 (267)
T COG4167          34 FTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEI   70 (267)
T ss_pred             EEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceE
Confidence            4567899999999999999999999999999998865

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.20  E-value=7.1e-07  Score=70.13  Aligned_cols=36  Identities=22%  Similarity=0.331  Sum_probs=32.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      |.+.+|++++|+|+|||||||+++++++.+.+..|.
T Consensus        24 ~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~   59 (635)
T PRK11147         24 LHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGR   59 (635)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeE
Confidence            557889999999999999999999999998877664

>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.20  E-value=9.3e-07  Score=68.76  Aligned_cols=37  Identities=27%  Similarity=0.467  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +..++|+.++|+|+|||||||+++.+++++.+..|..
T Consensus       362 l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I  398 (592)
T PRK10790        362 LSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEI  398 (592)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceE
Confidence            3467899999999999999999999999999988754

>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=9.6e-07  Score=63.17  Aligned_cols=31  Identities=26%  Similarity=0.393  Sum_probs=28.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.+.++++++|+|++|+||||+++++++++.
T Consensus        60 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~   90 (285)
T PRK14254         60 MDIPENQVTAMIGPSGCGKSTFLRCINRMND   90 (285)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence            4467899999999999999999999999986

>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein

Probab=98.20  E-value=1.1e-06  Score=68.00  Aligned_cols=37  Identities=22%  Similarity=0.415  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +..++|+.++|+|+||+||||+++.+++++.+..|..
T Consensus       361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I  397 (576)
T TIGR02204       361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRI  397 (576)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence            4468999999999999999999999999999887754

This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=98.20  E-value=8.5e-07  Score=59.76  Aligned_cols=84  Identities=19%  Similarity=0.180  Sum_probs=58.5

Q ss_pred             eeeehhhhhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHHHHhhhchHHHhhC-CcccCCCCCCCC
Q psy7658          25 LFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFG-NAKTVRNDNSSR  103 (114)
Q Consensus        25 iy~~~~~~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~~i~~~~~ileafg-~a~t~~n~nssr  103 (114)
                      +|.....++..+....+.+|+..|++|+|||..+.   +-. ...|-... ..+.+.......+++. ++.|..|++|||
T Consensus         8 vf~~~~~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~---G~~-~~~Giip~-~~~~~~~ll~~g~~~R~~~~t~~N~~SSR   82 (186)
T cd01363           8 VFRDVGPLLQSALDGYNVCIFAYGQTGSGKTYTME---GKR-EGAGIIPR-TVTDVIDLMDKGNANRTTAATAMNEHSSR   82 (186)
T ss_pred             HHHHHHHHHHHHhCCcceeEEEECCCCCcceEecC---CCC-CCCCcchH-HHHHHHHHHhhccccccccccCCCCccCc
Confidence            77666666666665668999999999999997643   111 11222222 2223555556666777 899999999999


Q ss_pred             ceeeEEEEec
Q psy7658         104 FGKFLQVHFK  113 (114)
Q Consensus       104 ~~~~~~l~f~  113 (114)
                      ...+++|++.
T Consensus        83 sH~i~~i~v~   92 (186)
T cd01363          83 SHSVFRIHFG   92 (186)
T ss_pred             ccEEEEEEEE
Confidence            9999999874

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.20  E-value=9.4e-07  Score=68.38  Aligned_cols=36  Identities=17%  Similarity=0.201  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++.+.+..|.
T Consensus        26 ~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~   61 (552)
T TIGR03719        26 LSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGE   61 (552)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence            457889999999999999999999999999887775

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.20  E-value=7.7e-07  Score=68.06  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++.+++++.+..|..
T Consensus       274 l~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i  310 (501)
T PRK11288        274 FSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQV  310 (501)
T ss_pred             EEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceE
Confidence            3467899999999999999999999999998776643

>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.20  E-value=1.1e-06  Score=61.53  Aligned_cols=32  Identities=25%  Similarity=0.324  Sum_probs=29.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|++|+||||+++++.+.+.+
T Consensus        25 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~   56 (252)
T PRK14272         25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDL   56 (252)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhccCCC
Confidence            45788999999999999999999999999864

>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional

Probab=98.19  E-value=8.9e-07  Score=67.71  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+||+||||+++++++++.+..|..
T Consensus        25 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I   61 (501)
T PRK11288         25 FDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSI   61 (501)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEE
Confidence            5578899999999999999999999999988877753

>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.19  E-value=7e-07  Score=62.80  Aligned_cols=37  Identities=16%  Similarity=0.360  Sum_probs=33.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.++++.+++|++|+||||.+|+|++++.+..|..
T Consensus        23 f~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I   59 (300)
T COG4152          23 FEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEI   59 (300)
T ss_pred             eeecCCeEEEeecCCCCCccchHHHHhccCCccCceE
Confidence            5578899999999999999999999999999987754

>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein

Probab=98.18  E-value=1e-06  Score=69.93  Aligned_cols=37  Identities=32%  Similarity=0.358  Sum_probs=33.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++++++++.+..|..
T Consensus       500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I  536 (710)
T TIGR03796       500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEI  536 (710)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            4468899999999999999999999999999988854

This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.

>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2

Probab=98.18  E-value=1.1e-06  Score=67.46  Aligned_cols=36  Identities=19%  Similarity=0.267  Sum_probs=31.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~   71 (114)
                      +...++++++|+|+|||||||+++++++++  .+..|.
T Consensus        21 ~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~   58 (520)
T TIGR03269        21 FTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR   58 (520)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceE
Confidence            457889999999999999999999999997  465554

The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.

>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter

Probab=98.18  E-value=1.1e-06  Score=69.77  Aligned_cols=37  Identities=32%  Similarity=0.416  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus       495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I  531 (708)
T TIGR01193       495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI  531 (708)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence            3467899999999999999999999999999988764

This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.

>PRK14236 phosphate transporter ATP-binding protein; Provisional

Probab=98.18  E-value=1.2e-06  Score=62.14  Aligned_cols=32  Identities=22%  Similarity=0.295  Sum_probs=29.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      |...+|++++|+|++|+||||+++++++++.+
T Consensus        46 ~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~   77 (272)
T PRK14236         46 MRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDL   77 (272)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence            45788999999999999999999999999763

>PRK14243 phosphate transporter ATP-binding protein; Provisional

Probab=98.18  E-value=1.6e-06  Score=61.30  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=28.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.+.++++++|+|++|+||||++++++++..
T Consensus        31 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   61 (264)
T PRK14243         31 LDIPKNQITAFIGPSGCGKSTILRCFNRLND   61 (264)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            5578899999999999999999999999875

>PRK03695 vitamin B12-transporter ATPase; Provisional

Probab=98.18  E-value=8.7e-07  Score=62.08  Aligned_cols=34  Identities=15%  Similarity=0.304  Sum_probs=29.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      +...++++++|+|++|+||||+++++++.... .|
T Consensus        17 l~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G   50 (248)
T PRK03695         17 AEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SG   50 (248)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-Ce
Confidence            55788999999999999999999999998753 44

>PRK10762 D-ribose transporter ATP binding protein; Provisional

Probab=98.17  E-value=9.3e-07  Score=67.61  Aligned_cols=37  Identities=22%  Similarity=0.322  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus       273 l~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I  309 (501)
T PRK10762        273 FTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYV  309 (501)
T ss_pred             EEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEE
Confidence            3467899999999999999999999999988776643

>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit

Probab=98.17  E-value=1.1e-06  Score=67.52  Aligned_cols=37  Identities=22%  Similarity=0.415  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +..++|+.++|+|+|||||||+++.+++++.+..|..
T Consensus       343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I  379 (529)
T TIGR02857       343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSI  379 (529)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            3467899999999999999999999999999887754

Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD

>PRK15064 ABC transporter ATP-binding protein; Provisional

Probab=98.17  E-value=1.1e-06  Score=67.73  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+||+||||+++++++.+.+..|..
T Consensus       340 ~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i  376 (530)
T PRK15064        340 LLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV  376 (530)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            4467899999999999999999999999988776643

>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.17  E-value=1.5e-06  Score=60.85  Aligned_cols=31  Identities=26%  Similarity=0.379  Sum_probs=28.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +...+|++++|+|++||||||+++++++.+.
T Consensus        25 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   55 (252)
T PRK14256         25 MDFPENSVTAIIGPSGCGKSTVLRSINRMHD   55 (252)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence            5578899999999999999999999999875

>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional

Probab=98.17  E-value=9.4e-07  Score=67.79  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=32.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|+|||||||+++++++++.+..|..
T Consensus       284 l~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i  320 (510)
T PRK15439        284 LEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRI  320 (510)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEE
Confidence            3467899999999999999999999999988776644

>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein

Probab=98.17  E-value=1.3e-06  Score=69.43  Aligned_cols=37  Identities=24%  Similarity=0.381  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +..++|+.++|+|+||+||||+++.+.+++.+..|..
T Consensus       502 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I  538 (711)
T TIGR00958       502 FTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQV  538 (711)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEE
Confidence            4478999999999999999999999999999988754

>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.17  E-value=1.2e-06  Score=62.34  Aligned_cols=32  Identities=22%  Similarity=0.324  Sum_probs=29.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      |...++++++|+|++|+||||+++++++++.+
T Consensus        42 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p   73 (276)
T PRK14271         42 MGFPARAVTSLMGPTGSGKTTFLRTLNRMNDK   73 (276)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhccCCc
Confidence            45678999999999999999999999999875

>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.16  E-value=1.4e-06  Score=61.58  Aligned_cols=32  Identities=22%  Similarity=0.316  Sum_probs=28.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...++++++|+|++|+||||+++++++...+
T Consensus        37 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~   68 (265)
T PRK14252         37 MMVHEKQVTALIGPSGCGKSTFLRCFNRMHDL   68 (265)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcccCC
Confidence            44678999999999999999999999998764

>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA

Probab=98.16  E-value=1.4e-06  Score=67.26  Aligned_cols=37  Identities=24%  Similarity=0.398  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +..++|+.++|+|+||+||||+++.+++++.+..|..
T Consensus       353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I  389 (571)
T TIGR02203       353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQI  389 (571)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeE
Confidence            3467899999999999999999999999999988754

This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.

>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.16  E-value=1.3e-06  Score=61.02  Aligned_cols=37  Identities=27%  Similarity=0.370  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+++.++|.|++||||||+++++.+++.+..|..
T Consensus        25 ~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v   61 (235)
T COG1122          25 LEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV   61 (235)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEE
Confidence            4578899999999999999999999999999988764

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.16  E-value=1e-06  Score=67.47  Aligned_cols=36  Identities=22%  Similarity=0.409  Sum_probs=31.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh--hCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA--VNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~--~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+  ..|.
T Consensus        26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~   63 (506)
T PRK13549         26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGE   63 (506)
T ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE
Confidence            45788999999999999999999999999875  4554

>PRK11147 ABC transporter ATPase component; Reviewed

Probab=98.16  E-value=1.1e-06  Score=69.04  Aligned_cols=37  Identities=24%  Similarity=0.307  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+..|++++|+|+|||||||+++++++.+.+..|..
T Consensus       340 l~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i  376 (635)
T PRK11147        340 AQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI  376 (635)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence            3467899999999999999999999999988777643

>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.16  E-value=1.4e-06  Score=62.39  Aligned_cols=31  Identities=23%  Similarity=0.276  Sum_probs=27.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.+.+|++++|+|++|+||||+++++.++..
T Consensus        60 l~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~   90 (286)
T PRK14275         60 ADILSKYVTAIIGPSGCGKSTFLRAINRMND   90 (286)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4467899999999999999999999999754

>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.16  E-value=1.1e-06  Score=62.58  Aligned_cols=38  Identities=18%  Similarity=0.323  Sum_probs=34.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      +.+..|++++++|++|+||||++|++.+.+.+.+|...
T Consensus        45 f~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~   82 (325)
T COG4586          45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR   82 (325)
T ss_pred             eecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence            45778999999999999999999999999999988653

>PRK11819 putative ABC transporter ATP-binding protein; Reviewed

Probab=98.15  E-value=1.1e-06  Score=68.08  Aligned_cols=37  Identities=19%  Similarity=0.240  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++.+.+..|..
T Consensus       345 l~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i  381 (556)
T PRK11819        345 FSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI  381 (556)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            3467899999999999999999999999988777643

>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.15  E-value=1.8e-06  Score=60.75  Aligned_cols=32  Identities=28%  Similarity=0.353  Sum_probs=29.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|++|+||||+++++++++.+
T Consensus        28 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~   59 (259)
T PRK14260         28 MDIYRNKVTAIIGPSGCGKSTFIKTLNRISEL   59 (259)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence            45788999999999999999999999998764

>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional

Probab=98.15  E-value=1.3e-06  Score=67.90  Aligned_cols=37  Identities=22%  Similarity=0.349  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+||+||||+++.+++++.+..|..
T Consensus       356 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I  392 (588)
T PRK13657        356 FEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRI  392 (588)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence            3467899999999999999999999999999987753

>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional

Probab=98.15  E-value=1.2e-06  Score=67.63  Aligned_cols=37  Identities=19%  Similarity=0.312  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus       344 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i  380 (547)
T PRK10522        344 LTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEI  380 (547)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            3467899999999999999999999999998887754

>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional

Probab=98.14  E-value=1.5e-06  Score=67.52  Aligned_cols=37  Identities=22%  Similarity=0.325  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus       336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i  372 (569)
T PRK10789        336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDI  372 (569)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEE
Confidence            3467899999999999999999999999999888754

>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional

Probab=98.14  E-value=1.1e-06  Score=67.06  Aligned_cols=37  Identities=11%  Similarity=0.179  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|++||||||+++.+.++..+.+|..
T Consensus       269 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i  305 (491)
T PRK10982        269 FDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTI  305 (491)
T ss_pred             EEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEE
Confidence            4467899999999999999999999999998776643

>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family

Probab=98.14  E-value=1.1e-06  Score=68.04  Aligned_cols=37  Identities=14%  Similarity=0.214  Sum_probs=32.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+..|++++|+|+|||||||+++++++.+.+..|..
T Consensus       343 l~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i  379 (552)
T TIGR03719       343 FKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTI  379 (552)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEE
Confidence            3467899999999999999999999999988776643

Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=98.14  E-value=2e-06  Score=53.26  Aligned_cols=27  Identities=37%  Similarity=0.539  Sum_probs=23.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      +...+++.++|.|+|||||||+++++.
T Consensus        10 l~i~~ge~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          10 VDVYGKVGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEcCCEEEEEEcCCCCCHHHHHHHhh
Confidence            446778999999999999999999876

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14239 phosphate transporter ATP-binding protein; Provisional

Probab=98.14  E-value=1.7e-06  Score=60.54  Aligned_cols=30  Identities=27%  Similarity=0.368  Sum_probs=27.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +...+|++++|+|++|+||||+++++.+..
T Consensus        26 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~   55 (252)
T PRK14239         26 LDFYPNEITALIGPSGSGKSTLLRSINRMN   55 (252)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhccc
Confidence            456789999999999999999999999874

>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family

Probab=98.14  E-value=1.4e-06  Score=68.97  Aligned_cols=37  Identities=30%  Similarity=0.378  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++++++++.+..|..
T Consensus       486 l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I  522 (694)
T TIGR03375       486 LTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV  522 (694)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            3467899999999999999999999999999988754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.

>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.14  E-value=1.5e-06  Score=62.70  Aligned_cols=31  Identities=19%  Similarity=0.323  Sum_probs=28.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.+.+|++++|+|++|+||||+++++++++.
T Consensus        66 ~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~   96 (305)
T PRK14264         66 MDIPEKSVTALIGPSGCGKSTFLRCLNRMND   96 (305)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4467899999999999999999999999875

>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.14  E-value=1.4e-06  Score=67.69  Aligned_cols=36  Identities=25%  Similarity=0.418  Sum_probs=31.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +..++|+.++|+|+|||||||+++.+++++ +..|..
T Consensus       371 l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I  406 (588)
T PRK11174        371 FTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSL  406 (588)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEE
Confidence            446789999999999999999999999999 776653

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.14  E-value=1.3e-06  Score=67.20  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=29.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +.+..|++++|+|+|||||||+++++++++.+
T Consensus        30 l~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~   61 (529)
T PRK15134         30 LQIEAGETLALVGESGSGKSVTALSILRLLPS   61 (529)
T ss_pred             EEEeCCCEEEEECCCCCcHHHHHHHHhcCCCC
Confidence            45678999999999999999999999999975

>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.13  E-value=1.9e-06  Score=61.31  Aligned_cols=31  Identities=19%  Similarity=0.348  Sum_probs=28.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.+.++++++|+|++|+||||+++++++++.
T Consensus        41 ~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~   71 (274)
T PRK14265         41 LKIPAKKIIAFIGPSGCGKSTLLRCFNRMND   71 (274)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4467899999999999999999999999875

>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.13  E-value=1.9e-06  Score=60.30  Aligned_cols=31  Identities=23%  Similarity=0.372  Sum_probs=27.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +...+|++++|+|++|+||||+++++.+...
T Consensus        26 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~   56 (252)
T PRK14255         26 LDFNQNEITALIGPSGCGKSTYLRTLNRMND   56 (252)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            4567899999999999999999999999764

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=98.13  E-value=2.9e-06  Score=61.68  Aligned_cols=39  Identities=26%  Similarity=0.391  Sum_probs=35.3

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      ++.+.+|++.+|+|-|||||||++|++-++..+.+|+..
T Consensus        48 sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~il   86 (386)
T COG4175          48 SLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEIL   86 (386)
T ss_pred             eeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEE
Confidence            366889999999999999999999999999999988653

>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed

Probab=98.12  E-value=1.6e-06  Score=67.34  Aligned_cols=37  Identities=19%  Similarity=0.299  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+||+||||+++.+++++.+..|..
T Consensus       361 ~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I  397 (574)
T PRK11160        361 LQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI  397 (574)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            3467899999999999999999999999999988854

>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.12  E-value=1.9e-06  Score=60.76  Aligned_cols=33  Identities=24%  Similarity=0.284  Sum_probs=30.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      |...++++++|+|++|+||||++++++++..+.
T Consensus        28 ~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~   60 (261)
T PRK14258         28 MEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE   60 (261)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcccCCC
Confidence            557899999999999999999999999998763

>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.12  E-value=2.3e-06  Score=59.82  Aligned_cols=29  Identities=28%  Similarity=0.446  Sum_probs=26.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      +...++++++|+|+||+||||++++++++
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl   52 (250)
T PRK14245         24 MEIEEKSVVAFIGPSGCGKSTFLRLFNRM   52 (250)
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence            55788999999999999999999999986

>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2

Probab=98.12  E-value=2.3e-06  Score=61.09  Aligned_cols=35  Identities=26%  Similarity=0.363  Sum_probs=31.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.++++++|+|++|+||||+++++.+++. ..|.
T Consensus        25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~   59 (275)
T cd03289          25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD   59 (275)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE
Confidence            5578999999999999999999999999987 5553

The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.

>PRK13549 xylose transporter ATP-binding subunit; Provisional

Probab=98.12  E-value=1.5e-06  Score=66.63  Aligned_cols=36  Identities=17%  Similarity=0.300  Sum_probs=31.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh-hCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA-VNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~-~~g~   71 (114)
                      |.+.+|++++|+|+|||||||+++.+++++.+ .+|.
T Consensus       283 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~  319 (506)
T PRK13549        283 FSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGE  319 (506)
T ss_pred             eEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcE
Confidence            44688999999999999999999999999873 5654

>PLN03073 ABC transporter F family; Provisional

Probab=98.12  E-value=1.6e-06  Score=69.18  Aligned_cols=37  Identities=19%  Similarity=0.285  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+..+++++|+|+|||||||+++++++.+.+..|..
T Consensus       530 l~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I  566 (718)
T PLN03073        530 FGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV  566 (718)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceE
Confidence            3467899999999999999999999999998877653

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=98.11  E-value=3.6e-06  Score=56.61  Aligned_cols=36  Identities=28%  Similarity=0.491  Sum_probs=30.1

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      .+....++.++|+|++||||||+++.+++++.+..+
T Consensus        19 ~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~   54 (186)
T cd01130          19 WLAVEARKNILISGGTGSGKTTLLNALLAFIPPDER   54 (186)
T ss_pred             HHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCC
Confidence            344677899999999999999999999999875443

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family

Probab=98.11  E-value=1.9e-06  Score=66.55  Aligned_cols=37  Identities=24%  Similarity=0.400  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus       339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  375 (544)
T TIGR01842       339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSV  375 (544)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            3467899999999999999999999999999887753

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.10  E-value=1.5e-06  Score=66.34  Aligned_cols=36  Identities=14%  Similarity=0.326  Sum_probs=31.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh-hCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA-VNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~-~~g~   71 (114)
                      +.+.++++++|+|+|||||||+++++++++.+ ..|.
T Consensus       281 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~  317 (500)
T TIGR02633       281 FSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN  317 (500)
T ss_pred             eEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeE
Confidence            44688999999999999999999999999874 4554

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.10  E-value=2.2e-06  Score=60.06  Aligned_cols=31  Identities=23%  Similarity=0.355  Sum_probs=28.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +...+|++++|+|++|+||||+++++.++..
T Consensus        27 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   57 (253)
T PRK14261         27 ISIPKNRVTALIGPSGCGKSTLLRCFNRMND   57 (253)
T ss_pred             EEECCCcEEEEECCCCCCHHHHHHHHhcccc
Confidence            4578899999999999999999999999764

>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]

Probab=98.10  E-value=1.8e-06  Score=65.91  Aligned_cols=37  Identities=22%  Similarity=0.311  Sum_probs=33.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.++++.+++|+||+||||++|++.+.+.+..|..
T Consensus        29 l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I   65 (500)
T COG1129          29 LTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI   65 (500)
T ss_pred             eEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceE
Confidence            5578999999999999999999999999999998854

>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein

Probab=98.10  E-value=1.5e-06  Score=66.35  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=31.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh--hCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA--VNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~--~~g~   71 (114)
                      +...+|++++|+|+|||||||+++++++++.+  ..|.
T Consensus        22 l~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~   59 (500)
T TIGR02633        22 LEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGE   59 (500)
T ss_pred             EEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE
Confidence            55788999999999999999999999998875  3453

Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).

>PRK13409 putative ATPase RIL; Provisional

Probab=98.09  E-value=2e-06  Score=67.22  Aligned_cols=35  Identities=29%  Similarity=0.327  Sum_probs=31.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ..+|++++|+|+||+||||+++++++.+.+..|..
T Consensus       362 i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I  396 (590)
T PRK13409        362 IYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEV  396 (590)
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            47899999999999999999999999998877754

>TIGR00235 udk uridine kinase

Probab=98.08  E-value=3.7e-06  Score=57.38  Aligned_cols=30  Identities=30%  Similarity=0.472  Sum_probs=26.5

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+.+.+++|+|++||||||+++.+.+.+..
T Consensus         3 ~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~   32 (207)
T TIGR00235         3 KPKGIIIGIGGGSGSGKTTVARKIYEQLGK   32 (207)
T ss_pred             CCCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            356899999999999999999999988763

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional

Probab=98.08  E-value=3.4e-06  Score=58.97  Aligned_cols=31  Identities=26%  Similarity=0.374  Sum_probs=28.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +...++++++|.|++|+||||++++++++..
T Consensus        24 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~   54 (250)
T PRK14266         24 LDIPKNSVTALIGPSGCGKSTFIRTLNRMND   54 (250)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence            5577899999999999999999999999864

>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter

Probab=98.08  E-value=2.1e-06  Score=66.55  Aligned_cols=37  Identities=27%  Similarity=0.386  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+||+||||+++.+++++.+..|..
T Consensus       363 ~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i  399 (555)
T TIGR01194       363 LRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEI  399 (555)
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            4467899999999999999999999999999988754

This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.

>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.08  E-value=3e-06  Score=56.95  Aligned_cols=37  Identities=24%  Similarity=0.341  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+..|+|+++-|+||+||||+++.+.+-..++.|+.
T Consensus        32 lsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I   68 (235)
T COG4778          32 LSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQI   68 (235)
T ss_pred             EEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceE
Confidence            5678899999999999999999999999888888764

>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]

Probab=98.07  E-value=2.6e-06  Score=66.03  Aligned_cols=41  Identities=24%  Similarity=0.366  Sum_probs=35.2

Q ss_pred             hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      .+++  +..++|+.++|+|+|||||||+++.+.+++.+..|..
T Consensus       344 vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I  386 (567)
T COG1132         344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEI  386 (567)
T ss_pred             cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeE
Confidence            4444  4468899999999999999999999999999987754

>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional

Probab=98.07  E-value=2.2e-06  Score=66.10  Aligned_cols=36  Identities=22%  Similarity=0.337  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|++++|+|++|+||||+++++++.+.+..|.
T Consensus        45 fsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGe   80 (549)
T PRK13545         45 FEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGT   80 (549)
T ss_pred             EEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceE
Confidence            457889999999999999999999999999887764

>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional

Probab=98.07  E-value=2.4e-06  Score=65.15  Aligned_cols=32  Identities=19%  Similarity=0.226  Sum_probs=28.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|+|||||||+++++++...+
T Consensus       281 l~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~  312 (490)
T PRK10938        281 WQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQ  312 (490)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCc
Confidence            34678999999999999999999999997653

>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]

Probab=98.07  E-value=2.5e-06  Score=64.66  Aligned_cols=37  Identities=19%  Similarity=0.353  Sum_probs=34.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++.+|+||||+||||+++++.+++.+.+|..
T Consensus        25 l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI   61 (501)
T COG3845          25 LSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEI   61 (501)
T ss_pred             eeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceE
Confidence            5578999999999999999999999999999998864

>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]

Probab=98.07  E-value=3.2e-06  Score=59.26  Aligned_cols=35  Identities=20%  Similarity=0.225  Sum_probs=30.8

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      .+.+++.++|.|+|||||||+++++.+...+.+|.
T Consensus        53 ~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~   87 (257)
T COG1119          53 QVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGD   87 (257)
T ss_pred             eecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCc
Confidence            36789999999999999999999999999886543

>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.07  E-value=2.5e-06  Score=57.34  Aligned_cols=37  Identities=24%  Similarity=0.290  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+++.++|+|+|||||||++-.+.++-.+.+|..
T Consensus        31 L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV   67 (228)
T COG4181          31 LVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEV   67 (228)
T ss_pred             EEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceE
Confidence            5578899999999999999999999999988887765

>TIGR01192 chvA glucan exporter ATP-binding protein

Probab=98.07  E-value=2.4e-06  Score=66.62  Aligned_cols=37  Identities=24%  Similarity=0.348  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+||+||||+++.+++++.+..|+.
T Consensus       356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i  392 (585)
T TIGR01192       356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQI  392 (585)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEE
Confidence            3467899999999999999999999999999888754

This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=98.05  E-value=2.7e-06  Score=65.72  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=33.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++++++|+|+||+||||+++++.+.+.+..|..
T Consensus        24 l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i   60 (530)
T COG0488          24 LTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEV   60 (530)
T ss_pred             ceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeE
Confidence            5578899999999999999999999999998888764

>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=98.04  E-value=3.2e-06  Score=61.08  Aligned_cols=37  Identities=24%  Similarity=0.292  Sum_probs=34.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+..|++++|+|.||+||||++|++-++..+.+|+.
T Consensus        27 L~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v   63 (339)
T COG1135          27 LEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSV   63 (339)
T ss_pred             EEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceE
Confidence            5678999999999999999999999999999988865

>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional

Probab=98.04  E-value=2.9e-06  Score=65.31  Aligned_cols=35  Identities=20%  Similarity=0.352  Sum_probs=30.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++. ..|+
T Consensus       307 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~  341 (529)
T PRK15134        307 FTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGE  341 (529)
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcE
Confidence            4467899999999999999999999999985 5554

>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=98.04  E-value=3.9e-06  Score=64.33  Aligned_cols=37  Identities=30%  Similarity=0.326  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+||.++|+|+|||||||+++.+.+.+.+..|+.
T Consensus       359 l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i  395 (573)
T COG4987         359 LTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSI  395 (573)
T ss_pred             eeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCee
Confidence            3467899999999999999999999999999988765

>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei

Probab=98.03  E-value=3.2e-06  Score=66.79  Aligned_cols=36  Identities=14%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+|+.++|+|++||||||+++++++++.+..|.
T Consensus       473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~  508 (659)
T TIGR00954       473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGR  508 (659)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCe
Confidence            346789999999999999999999999998877664

>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family

Probab=98.02  E-value=3.6e-06  Score=66.74  Aligned_cols=37  Identities=30%  Similarity=0.391  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++++++++.+..|..
T Consensus       478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I  514 (694)
T TIGR01846       478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV  514 (694)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence            3467899999999999999999999999999888754

Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.

>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]

Probab=98.00  E-value=4.3e-06  Score=62.51  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=33.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +..++|+.+.++|.+||||||+++.+.++..+.+|..
T Consensus       344 l~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I  380 (546)
T COG4615         344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI  380 (546)
T ss_pred             eEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCce
Confidence            4478899999999999999999999999999998864

>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=98.00  E-value=5.9e-06  Score=54.58  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=30.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +.+.+++++-++|||||||||++..+.+++...
T Consensus        23 ~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~   55 (213)
T COG4136          23 FTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQ   55 (213)
T ss_pred             EEecCCcEEEEECCCCccHHHHHHHHHhhcccC
Confidence            457789999999999999999999999999775

>KOG0058|consensus

Probab=98.00  E-value=5.1e-06  Score=65.44  Aligned_cols=42  Identities=21%  Similarity=0.389  Sum_probs=36.3

Q ss_pred             hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      .+++  +.+++|++++++||||+||||++.++.++..+.+|...
T Consensus       483 Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Il  526 (716)
T KOG0058|consen  483 VLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRIL  526 (716)
T ss_pred             hhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEE
Confidence            4444  34789999999999999999999999999999998763

>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.99  E-value=6.7e-06  Score=56.39  Aligned_cols=37  Identities=19%  Similarity=0.285  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...++.+..++||+|+||||++.++.+++..++|..
T Consensus        22 l~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i   58 (252)
T COG4604          22 LDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI   58 (252)
T ss_pred             eeecCCceeEEECCCCccHHHHHHHHHHhccccCceE
Confidence            4467899999999999999999999999999998865

>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]

Probab=97.99  E-value=4.5e-06  Score=64.34  Aligned_cols=37  Identities=27%  Similarity=0.485  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |..++++.++|+|+|||||||+++.+++++.+..|+.
T Consensus       342 ~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I  378 (559)
T COG4988         342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI  378 (559)
T ss_pred             eEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence            4468899999999999999999999999999887764

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.99  E-value=5.3e-06  Score=70.54  Aligned_cols=37  Identities=22%  Similarity=0.346  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+|||||||+++++.+++.+..|..
T Consensus       406 l~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I  442 (1466)
T PTZ00265        406 FTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDI  442 (1466)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeE
Confidence            3468899999999999999999999999999988754

>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]

Probab=97.97  E-value=5.5e-06  Score=63.30  Aligned_cols=38  Identities=26%  Similarity=0.373  Sum_probs=34.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      |....|+.++|+|||||||||+.|.+.+.+.+.+|...
T Consensus       357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VR  394 (580)
T COG4618         357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR  394 (580)
T ss_pred             eEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEE
Confidence            55778999999999999999999999999999988764

>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]

Probab=97.97  E-value=5.4e-06  Score=57.69  Aligned_cols=38  Identities=24%  Similarity=0.265  Sum_probs=31.4

Q ss_pred             hhhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          31 AAYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        31 ~~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +.++.  +.+..+++.+|.||+||||||+...++++-...
T Consensus        18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~   57 (251)
T COG0396          18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYE   57 (251)
T ss_pred             hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCce
Confidence            34444  457899999999999999999999999987443

>TIGR03238 dnd_assoc_3 dnd system-associated protein 3

Probab=97.96  E-value=4.2e-06  Score=63.75  Aligned_cols=32  Identities=19%  Similarity=0.271  Sum_probs=26.5

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      .+.+|++++|+|+|||||||+++  .+...+..|
T Consensus        28 ~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sG   59 (504)
T TIGR03238        28 ELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEG   59 (504)
T ss_pred             eecCCCEEEEECCCCCCHHHHHh--cCCCCCCCC
Confidence            36789999999999999999999  555555555

cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.

>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.96  E-value=9.7e-06  Score=56.17  Aligned_cols=28  Identities=36%  Similarity=0.533  Sum_probs=23.3

Q ss_pred             hhhhh--chhcCCcEEEEEcCCCCchHHHH
Q psy7658          31 AAYSA--LATSGNQVVVISGESGSGKTECT   58 (114)
Q Consensus        31 ~~~~~--l~~~~~~~i~l~G~sGsGKst~~   58 (114)
                      .+.+.  +.+.++++++|+|+|||||||++
T Consensus         9 ~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~   38 (226)
T cd03270           9 HNLKNVDVDIPRNKLVVITGVSGSGKSSLA   38 (226)
T ss_pred             hccccceeecCCCcEEEEEcCCCCCHHHHH
Confidence            34444  55789999999999999999996

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]

Probab=97.94  E-value=5.9e-06  Score=63.63  Aligned_cols=33  Identities=30%  Similarity=0.421  Sum_probs=30.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      |.+.+||+++|+|||||||||+++.+++++...
T Consensus        30 f~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~   62 (539)
T COG1123          30 FEVEPGEILGIVGESGSGKSTLALALMGLLPEG   62 (539)
T ss_pred             EEecCCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence            567899999999999999999999999999876

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.93  E-value=1.2e-05  Score=49.93  Aligned_cols=23  Identities=43%  Similarity=0.678  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +|+|.|++||||||+++.+...+
T Consensus         1 vI~I~G~~gsGKST~a~~La~~~   23 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAERL   23 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999875

...

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.93  E-value=8.6e-06  Score=54.70  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ++.++|+|++||||||+++.+.+.+.
T Consensus         2 g~~i~l~G~sGsGKsTl~~~l~~~~~   27 (186)
T PRK10078          2 GKLIWLMGPSGSGKDSLLAALRQREQ   27 (186)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhccCC
Confidence            57899999999999999999988764

>KOG0055|consensus

Probab=97.91  E-value=8.6e-06  Score=67.47  Aligned_cols=37  Identities=27%  Similarity=0.450  Sum_probs=34.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+..|+.++|+|+|||||||+++++.+++.+..|..
T Consensus       374 l~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V  410 (1228)
T KOG0055|consen  374 LKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEV  410 (1228)
T ss_pred             EEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceE
Confidence            4578899999999999999999999999999998865

>PRK00300 gmk guanylate kinase; Provisional

Probab=97.90  E-value=1.3e-05  Score=54.26  Aligned_cols=28  Identities=29%  Similarity=0.470  Sum_probs=25.4

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+++.++|+|++||||||+++.+++.+.
T Consensus         3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~   30 (205)
T PRK00300          3 RRGLLIVLSGPSGAGKSTLVKALLERDP   30 (205)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            3589999999999999999999999874

>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional

Probab=97.90  E-value=8.7e-06  Score=59.49  Aligned_cols=31  Identities=29%  Similarity=0.356  Sum_probs=28.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.+.+|+.++|+|++||||||+++.+++...
T Consensus       103 ~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~  133 (329)
T PRK14257        103 LDIKRNKVTAFIGPSGCGKSTFLRNLNQLND  133 (329)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence            3467899999999999999999999999875

>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch

Probab=97.90  E-value=7.4e-06  Score=55.71  Aligned_cols=29  Identities=14%  Similarity=0.283  Sum_probs=24.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      +....+++++|+|++|+||||+++.+...
T Consensus        24 ~~l~~~~~~~l~G~Ng~GKStll~~i~~~   52 (202)
T cd03243          24 INLGSGRLLLITGPNMGGKSTYLRSIGLA   52 (202)
T ss_pred             EEEcCCeEEEEECCCCCccHHHHHHHHHH
Confidence            44556799999999999999999999843

Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.89  E-value=1.4e-05  Score=53.04  Aligned_cols=26  Identities=27%  Similarity=0.437  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +++++|+|++||||||+++.++..+.
T Consensus         1 ~~~~~i~G~sGsGKttl~~~l~~~~~   26 (179)
T TIGR02322         1 GRLIYVVGPSGAGKDTLLDYARARLA   26 (179)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHcC
Confidence            46899999999999999999888764

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>PRK09825 idnK D-gluconate kinase; Provisional

Probab=97.88  E-value=1.5e-05  Score=53.33  Aligned_cols=28  Identities=25%  Similarity=0.391  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .++++++.|++||||||+++.+.+.+..
T Consensus         2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~   29 (176)
T PRK09825          2 AGESYILMGVSGSGKSLIGSKIAALFSA   29 (176)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence            4789999999999999999999998754

>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]

Probab=97.87  E-value=6e-07  Score=61.45  Aligned_cols=37  Identities=19%  Similarity=0.324  Sum_probs=33.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+..++++++.||+|+||||.+-++.++..+++|..
T Consensus        25 l~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i   61 (243)
T COG1137          25 LEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKI   61 (243)
T ss_pred             EEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceE
Confidence            6678899999999999999999999999999998864

>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]

Probab=97.87  E-value=1.1e-05  Score=62.86  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|+.+.|.||||||||+++|.+.++++...|..
T Consensus       414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I  450 (604)
T COG4178         414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRI  450 (604)
T ss_pred             eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCce
Confidence            3367899999999999999999999999999888764

>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]

Probab=97.86  E-value=1.2e-05  Score=62.20  Aligned_cols=36  Identities=22%  Similarity=0.350  Sum_probs=31.4

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      .+..++.|+|+|++|+||||+++++++.+.+..|..
T Consensus       344 ~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v  379 (530)
T COG0488         344 RIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV  379 (530)
T ss_pred             EecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceE
Confidence            367899999999999999999999999888776643

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=97.86  E-value=1.5e-05  Score=59.72  Aligned_cols=33  Identities=27%  Similarity=0.413  Sum_probs=30.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +..+++|.++|+|||||||||+.+.+++++...
T Consensus       308 l~L~~gqTlGlVGESGSGKsTlG~allrL~~s~  340 (534)
T COG4172         308 LTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ  340 (534)
T ss_pred             eEecCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence            456789999999999999999999999999876

>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.85  E-value=1.9e-05  Score=52.79  Aligned_cols=45  Identities=18%  Similarity=0.200  Sum_probs=34.6

Q ss_pred             eehhhhhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          27 AIGSAAYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        27 ~~~~~~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ..+.+++.+  +...+++.+++.||||+|||++++.+--+..+.+|.
T Consensus        12 yg~~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~   58 (242)
T COG4161          12 YGAHQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGT   58 (242)
T ss_pred             cccchheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCe
Confidence            344455554  446789999999999999999999877777776664

>KOG0057|consensus

Probab=97.85  E-value=1.6e-05  Score=61.21  Aligned_cols=36  Identities=25%  Similarity=0.477  Sum_probs=32.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+..|+.++|+|.+||||||++|.+++++. .+|+.
T Consensus       373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I  408 (591)
T KOG0057|consen  373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSI  408 (591)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcE
Confidence            5577899999999999999999999999999 66654

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=97.85  E-value=2.3e-05  Score=54.28  Aligned_cols=33  Identities=21%  Similarity=0.358  Sum_probs=28.9

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ....+++|.|++||||||+++.+.+.+....|.
T Consensus        31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~   63 (229)
T PRK09270         31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGEL   63 (229)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCC
Confidence            346799999999999999999999999887664

>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes

Probab=97.85  E-value=1.9e-05  Score=53.88  Aligned_cols=30  Identities=17%  Similarity=0.279  Sum_probs=25.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +....+++++|+||||+||||+++.+.+..
T Consensus        20 i~l~~g~~~~ltGpNg~GKSTllr~i~~~~   49 (199)
T cd03283          20 IDMEKKNGILITGSNMSGKSTFLRTIGVNV   49 (199)
T ss_pred             EEEcCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            445557999999999999999999988755

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid

>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function

Probab=97.83  E-value=1.9e-05  Score=53.66  Aligned_cols=31  Identities=23%  Similarity=0.307  Sum_probs=25.9

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ...++ +++|+|+||+||||+++.+.+++...
T Consensus        19 ~~~~g-~~~i~G~nGsGKStll~al~~l~~~~   49 (197)
T cd03278          19 PFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQ   49 (197)
T ss_pred             ecCCC-cEEEECCCCCCHHHHHHHHHHHhccc
Confidence            34556 99999999999999999998887543

Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w

>PLN03073 ABC transporter F family; Provisional

Probab=97.82  E-value=1.2e-05  Score=64.20  Aligned_cols=29  Identities=17%  Similarity=0.241  Sum_probs=26.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      |.+..|++++|+|+|||||||+++++.+.
T Consensus       198 l~i~~Ge~~gLvG~NGsGKSTLLr~l~g~  226 (718)
T PLN03073        198 VTLAFGRHYGLVGRNGTGKTTFLRYMAMH  226 (718)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHcCC
Confidence            44678999999999999999999999875

>PLN03232 ABC transporter C family member; Provisional

Probab=97.82  E-value=1.2e-05  Score=68.63  Aligned_cols=41  Identities=17%  Similarity=0.251  Sum_probs=35.3

Q ss_pred             hhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          32 AYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        32 ~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +++++  .+.+|+.++|+|+|||||||+++.+++++.+..|+.
T Consensus      1251 vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1293 (1495)
T PLN03232       1251 VLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293 (1495)
T ss_pred             ccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE
Confidence            44443  467899999999999999999999999999988865

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.81  E-value=1.7e-05  Score=52.59  Aligned_cols=26  Identities=35%  Similarity=0.498  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +++++|+|++||||||+++.+++.+.
T Consensus         1 g~ii~l~G~~GsGKsTl~~~L~~~~~   26 (180)
T TIGR03263         1 GLLIVISGPSGVGKSTLVKALLEEDP   26 (180)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHccCc
Confidence            57899999999999999999998753

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]

Probab=97.81  E-value=1.3e-05  Score=55.54  Aligned_cols=38  Identities=18%  Similarity=0.274  Sum_probs=34.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      +.+.+++.+.|+|.+|+||||+++.+.+.+.+.+|...
T Consensus        27 L~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~   64 (263)
T COG1101          27 LEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQIL   64 (263)
T ss_pred             eeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEE
Confidence            44678999999999999999999999999999998753

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.81  E-value=1.2e-05  Score=70.34  Aligned_cols=37  Identities=16%  Similarity=0.239  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|++||||||+++++++.+.+.+|..
T Consensus      1960 f~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I 1996 (2272)
T TIGR01257      1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDA 1996 (2272)
T ss_pred             EEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Confidence            3467899999999999999999999999998887754

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PLN03130 ABC transporter C family member; Provisional

Probab=97.81  E-value=1.2e-05  Score=69.04  Aligned_cols=37  Identities=19%  Similarity=0.276  Sum_probs=33.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+++||.++|+|++||||||+++.+.+++.+..|..
T Consensus      1260 ~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I 1296 (1622)
T PLN03130       1260 FEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296 (1622)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence            3468899999999999999999999999999988764

>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional

Probab=97.80  E-value=1.3e-05  Score=63.39  Aligned_cols=36  Identities=25%  Similarity=0.328  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...++++++|+|++|+||||+++++++.+.+..|.
T Consensus        29 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~   64 (648)
T PRK10535         29 LDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGT   64 (648)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence            557899999999999999999999999999887764

>KOG0056|consensus

Probab=97.80  E-value=2.1e-05  Score=60.39  Aligned_cols=38  Identities=21%  Similarity=0.449  Sum_probs=34.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      +.+.+|+.++++||||+||||++|++.+++...+|...
T Consensus       559 F~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~  596 (790)
T KOG0056|consen  559 FTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSIT  596 (790)
T ss_pred             EEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEE
Confidence            34678999999999999999999999999999888764

>PLN03211 ABC transporter G-25; Provisional

Probab=97.79  E-value=9.8e-06  Score=64.16  Aligned_cols=36  Identities=19%  Similarity=0.349  Sum_probs=30.5

Q ss_pred             hhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          32 AYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        32 ~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .++++  ...+|++++|+|+||+||||+++++++.+.+
T Consensus        83 iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~  120 (659)
T PLN03211         83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQG  120 (659)
T ss_pred             eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            44443  3678999999999999999999999998765

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.79  E-value=4.3e-05  Score=42.79  Aligned_cols=27  Identities=30%  Similarity=0.480  Sum_probs=23.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|+|++|+||||++..+.-.+..
T Consensus        23 g~~tli~G~nGsGKSTllDAi~~~L~~   49 (62)
T PF13555_consen   23 GDVTLITGPNGSGKSTLLDAIQTVLYG   49 (62)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHcC
Confidence            458999999999999999988776654

>KOG0055|consensus

Probab=97.79  E-value=2.1e-05  Score=65.27  Aligned_cols=41  Identities=24%  Similarity=0.376  Sum_probs=35.8

Q ss_pred             hhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          32 AYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        32 ~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      .++++  .+..||.++|+|||||||||.+.++-++..+..|..
T Consensus      1005 Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V 1047 (1228)
T KOG0055|consen 1005 VLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047 (1228)
T ss_pred             hhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence            45554  467899999999999999999999999999998865

>PTZ00243 ABC transporter; Provisional

Probab=97.78  E-value=1.3e-05  Score=68.55  Aligned_cols=37  Identities=22%  Similarity=0.276  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+||.++|+|++||||||+++.+++++.+..|..
T Consensus      1331 f~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I 1367 (1560)
T PTZ00243       1331 FRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEI 1367 (1560)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            3467899999999999999999999999999888764

>TIGR01257 rim_protein retinal-specific rim ABC transporter

Probab=97.78  E-value=1.2e-05  Score=70.25  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|++||||||+++++.+++.+.+|..
T Consensus       951 l~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I  987 (2272)
T TIGR01257       951 ITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTV  987 (2272)
T ss_pred             EEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEE
Confidence            3467899999999999999999999999998887753

This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=97.77  E-value=3.1e-05  Score=52.77  Aligned_cols=26  Identities=35%  Similarity=0.493  Sum_probs=24.0

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +..+|+|+|++||||||+++.+.+.+
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~l   30 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEEL   30 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999999987

>PTZ00265 multidrug resistance protein (mdr1); Provisional

Probab=97.77  E-value=2e-05  Score=67.13  Aligned_cols=37  Identities=27%  Similarity=0.545  Sum_probs=32.1

Q ss_pred             hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ++++  |.+.+|+.++|+|+|||||||+++++++++.+.
T Consensus      1183 vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~ 1221 (1466)
T PTZ00265       1183 IYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLK 1221 (1466)
T ss_pred             cccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCc
Confidence            4444  447889999999999999999999999999974

>KOG0060|consensus

Probab=97.77  E-value=2e-05  Score=61.08  Aligned_cols=36  Identities=25%  Similarity=0.385  Sum_probs=32.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +++.+++.+.|+|+||||||+++|.+.++|...+|+
T Consensus       456 ~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~  491 (659)
T KOG0060|consen  456 LEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGK  491 (659)
T ss_pred             eEecCCCeEEEECCCCCchhHHHHHHhcccccCCCe
Confidence            457789999999999999999999999999876654

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.75  E-value=1.8e-05  Score=67.59  Aligned_cols=41  Identities=20%  Similarity=0.268  Sum_probs=35.4

Q ss_pred             hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ++++  +.+++||.++|+|++||||||+++.+.+++.+..|..
T Consensus      1301 vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I 1343 (1522)
T TIGR00957      1301 VLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEI 1343 (1522)
T ss_pred             cccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeE
Confidence            4444  3468999999999999999999999999999888765

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>PLN03232 ABC transporter C family member; Provisional

Probab=97.74  E-value=2.1e-05  Score=67.16  Aligned_cols=36  Identities=28%  Similarity=0.382  Sum_probs=32.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +..++|+.++|+|++||||||+++.+++.+.+..|.
T Consensus       638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~  673 (1495)
T PLN03232        638 LEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETS  673 (1495)
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCC
Confidence            446889999999999999999999999999987763

>KOG0927|consensus

Probab=97.74  E-value=1.3e-05  Score=61.67  Aligned_cols=57  Identities=23%  Similarity=0.366  Sum_probs=43.3

Q ss_pred             CCCCCCCeeeeehhhh---------hhhch--hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          17 ILGTLSPHLFAIGSAA---------YSALA--TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        17 ~~~~~~phiy~~~~~~---------~~~l~--~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      .++.+||.+-.+.+..         |..+.  +..+..+.++||+|+||||+++++++.+.+..|...
T Consensus       381 ~vg~~p~pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs  448 (614)
T KOG0927|consen  381 EVGKIPPPVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVS  448 (614)
T ss_pred             cccCCCCCeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccc
Confidence            4666776666555433         33433  556899999999999999999999999999887654

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=97.73  E-value=3e-05  Score=52.41  Aligned_cols=23  Identities=39%  Similarity=0.661  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +++|+|++||||||+++.+.+.+
T Consensus         1 iigi~G~~GsGKSTl~~~l~~~l   23 (198)
T cd02023           1 IIGIAGGSGSGKTTVAEEIIEQL   23 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999987

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>PLN03130 ABC transporter C family member; Provisional

Probab=97.72  E-value=2.7e-05  Score=66.88  Aligned_cols=36  Identities=28%  Similarity=0.373  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC-CC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVN-KS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~-g~   71 (114)
                      +..++|+.++|+|++||||||+++.+++.+.+.. |.
T Consensus       638 l~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~  674 (1622)
T PLN03130        638 LDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS  674 (1622)
T ss_pred             EEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCce
Confidence            4468899999999999999999999999999887 54

>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11

Probab=97.72  E-value=3.5e-05  Score=55.82  Aligned_cols=36  Identities=31%  Similarity=0.429  Sum_probs=30.1

Q ss_pred             hhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658          34 SALATSGNQVVVISGESGSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        34 ~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~   69 (114)
                      ..+....+..++++|++||||||+++.+++++....
T Consensus       137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~  172 (308)
T TIGR02788       137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDE  172 (308)
T ss_pred             HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccc
Confidence            334466789999999999999999999999886543

The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=97.71  E-value=3e-05  Score=53.63  Aligned_cols=25  Identities=20%  Similarity=0.457  Sum_probs=22.6

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +++|.|++||||||+++.+.+.+..
T Consensus         1 IigI~G~sGSGKTTla~~L~~~l~~   25 (220)
T cd02025           1 IIGIAGSVAVGKSTTARVLQALLSR   25 (220)
T ss_pred             CEEeeCCCCCCHHHHHHHHHHHHhh
Confidence            4789999999999999999998864

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.71  E-value=3.2e-05  Score=53.70  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+++++|+||||+||||++++|...+.
T Consensus        22 ~~~~~~i~GpNGsGKStll~ai~~~l~   48 (243)
T cd03272          22 SPKHNVVVGRNGSGKSNFFAAIRFVLS   48 (243)
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHc
Confidence            368999999999999999999986543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.70  E-value=2.4e-05  Score=66.83  Aligned_cols=37  Identities=22%  Similarity=0.379  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|++||||||+++.+++.+.+..|..
T Consensus       447 l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i  483 (1490)
T TIGR01271       447 FKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI  483 (1490)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4467899999999999999999999999998887753

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2

Probab=97.70  E-value=4.5e-05  Score=51.54  Aligned_cols=26  Identities=42%  Similarity=0.537  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +|+|.|++||||||+++.+...+...
T Consensus         1 IIgI~G~sgSGKTTla~~L~~~L~~~   26 (194)
T PF00485_consen    1 IIGIAGPSGSGKTTLAKRLAQILNKR   26 (194)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHTTC
T ss_pred             CEEEECCCCCCHHHHHHHHHHHhCcc
Confidence            58999999999999999999988754

7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....

>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP)

Probab=97.69  E-value=2.4e-05  Score=66.90  Aligned_cols=37  Identities=16%  Similarity=0.329  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|++||||||+++.+++.+.+..|..
T Consensus       659 l~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i  695 (1522)
T TIGR00957       659 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV  695 (1522)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEE
Confidence            4467899999999999999999999999998877653

This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.

>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.67  E-value=5.3e-05  Score=53.15  Aligned_cols=29  Identities=28%  Similarity=0.349  Sum_probs=25.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ...+.+|+||||||||++++.+...+...
T Consensus        24 ~~~~~~IvG~NGsGKStll~Ai~~ll~~~   52 (251)
T cd03273          24 DPQFNAITGLNGSGKSNILDAICFVLGIT   52 (251)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhccc
Confidence            46789999999999999999999998654

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>PTZ00243 ABC transporter; Provisional

Probab=97.65  E-value=2.9e-05  Score=66.51  Aligned_cols=36  Identities=17%  Similarity=0.353  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|+.++|+|++||||||+++.+++.+.+..|.
T Consensus       681 l~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~  716 (1560)
T PTZ00243        681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGR  716 (1560)
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence            446789999999999999999999999999887665

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=97.63  E-value=6.5e-05  Score=46.43  Aligned_cols=28  Identities=32%  Similarity=0.529  Sum_probs=24.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ++.++|.|++|+|||++++.++..+...
T Consensus         2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~   29 (148)
T smart00382        2 GEVILIVGPPGSGKTTLARALARELGPP   29 (148)
T ss_pred             CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence            5789999999999999999998887664

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.58  E-value=8.1e-05  Score=50.29  Aligned_cols=26  Identities=31%  Similarity=0.464  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|..++|+||||+||||+++.++...
T Consensus         3 ~G~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           3 KGLLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhhc
Confidence            57889999999999999999888765

>PRK07261 topology modulation protein; Provisional

Probab=97.58  E-value=8.3e-05  Score=49.45  Aligned_cols=24  Identities=33%  Similarity=0.409  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +.|+|+|++|+||||+++.+...+
T Consensus         1 ~ri~i~G~~GsGKSTla~~l~~~~   24 (171)
T PRK07261          1 MKIAIIGYSGSGKSTLARKLSQHY   24 (171)
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHHh
Confidence            358999999999999999988765

>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR)

Probab=97.57  E-value=5.7e-05  Score=64.56  Aligned_cols=35  Identities=26%  Similarity=0.454  Sum_probs=30.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|+.++|+|++||||||+++.+++++. ..|.
T Consensus      1240 ~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~ 1274 (1490)
T TIGR01271      1240 FSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGE 1274 (1490)
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcE
Confidence            3468899999999999999999999999986 5554

The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.

>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit

Probab=97.56  E-value=2.4e-05  Score=57.06  Aligned_cols=26  Identities=31%  Similarity=0.429  Sum_probs=23.5

Q ss_pred             EEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          46 ISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        46 l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      |+|+|||||||+++++++++.+.+|.
T Consensus         1 l~G~nGsGKSTLl~~iaGl~~p~~G~   26 (325)
T TIGR01187         1 LLGPSGCGKTTLLRLLAGFEQPDSGS   26 (325)
T ss_pred             CcCCCCCCHHHHHHHHHCCCCCCceE
Confidence            57999999999999999999887774

This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).

>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.56  E-value=8.2e-05  Score=50.60  Aligned_cols=37  Identities=27%  Similarity=0.321  Sum_probs=31.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +....+.+|.|+|.|||||||++++|--+..+..|..
T Consensus        27 L~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I   63 (256)
T COG4598          27 LQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI   63 (256)
T ss_pred             eecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceE
Confidence            4456799999999999999999999988877777654

>PRK08118 topology modulation protein; Reviewed

Probab=97.56  E-value=9.4e-05  Score=49.07  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.|+|+|++||||||+++.+...+.
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~l~   26 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEKLN   26 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3589999999999999999988753

>KOG0064|consensus

Probab=97.55  E-value=6.2e-05  Score=58.20  Aligned_cols=36  Identities=17%  Similarity=0.277  Sum_probs=32.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +++.+|-.+.|+||+|||||++.|++.++|+...|.
T Consensus       503 f~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~  538 (728)
T KOG0064|consen  503 FQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGL  538 (728)
T ss_pred             EEecCCceEEEECCCCccHHHHHHHHhccCcccCCe
Confidence            456789999999999999999999999999887663

>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends

Probab=97.54  E-value=7.9e-05  Score=51.07  Aligned_cols=26  Identities=27%  Similarity=0.475  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+++++|+|++|+||||+++.+...+
T Consensus        27 ~~~~~~i~G~NGsGKSTll~~i~~~l   52 (213)
T cd03279          27 NNGLFLICGPTGAGKSTILDAITYAL   52 (213)
T ss_pred             ccCEEEEECCCCCCHHHHHHHheeeE
Confidence            37899999999999999999987533

They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=97.54  E-value=0.00011  Score=49.92  Aligned_cols=26  Identities=27%  Similarity=0.622  Sum_probs=23.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .++|+|++||||||+++.+++++...
T Consensus         3 lilI~GptGSGKTTll~~ll~~~~~~   28 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDYINKN   28 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            68899999999999999998888643

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein

Probab=97.54  E-value=5e-05  Score=59.71  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=28.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+|++++|+|++||||||+++.+.+...+
T Consensus        46 ~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~   77 (617)
T TIGR00955        46 GVAKPGELLAVMGSSGAGKTTLMNALAFRSPK   77 (617)
T ss_pred             EEEeCCeEEEEECCCCCCHHHHHHHHhCCCCC
Confidence            34688999999999999999999999998754

>PTZ00301 uridine kinase; Provisional

Probab=97.53  E-value=0.0001  Score=50.80  Aligned_cols=24  Identities=42%  Similarity=0.581  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      -+|+|.|+|||||||+++.+...+
T Consensus         4 ~iIgIaG~SgSGKTTla~~l~~~l   27 (210)
T PTZ00301          4 TVIGISGASGSGKSSLSTNIVSEL   27 (210)
T ss_pred             EEEEEECCCcCCHHHHHHHHHHHH
Confidence            468999999999999998887655

>TIGR00554 panK_bact pantothenate kinase, bacterial type

Probab=97.53  E-value=0.0001  Score=53.06  Aligned_cols=28  Identities=18%  Similarity=0.363  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...+|+|.|++||||||+++.+.+.+..
T Consensus        61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~   88 (290)
T TIGR00554        61 IPYIISIAGSVAVGKSTTARILQALLSR   88 (290)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4578999999999999999999888863

Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=97.53  E-value=0.00012  Score=54.11  Aligned_cols=31  Identities=29%  Similarity=0.502  Sum_probs=26.8

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..++..++|+|++||||||+++.+++++...
T Consensus       131 ~~~~glilI~GpTGSGKTTtL~aLl~~i~~~  161 (358)
T TIGR02524       131 APQEGIVFITGATGSGKSTLLAAIIRELAEA  161 (358)
T ss_pred             hccCCEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            3467899999999999999999999988543

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes

Probab=97.53  E-value=0.00012  Score=49.62  Aligned_cols=27  Identities=33%  Similarity=0.458  Sum_probs=22.7

Q ss_pred             chhcCC-cEEEEEcCCCCchHHHHHHHH
Q psy7658          36 LATSGN-QVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        36 l~~~~~-~~i~l~G~sGsGKst~~~~i~   62 (114)
                      +....+ ++++|+|+||+||||+++.+.
T Consensus        22 ~~i~~~~~~~~ltG~Ng~GKStll~~i~   49 (200)
T cd03280          22 IQLGENKRVLVITGPNAGGKTVTLKTLG   49 (200)
T ss_pred             EEECCCceEEEEECCCCCChHHHHHHHH
Confidence            445555 579999999999999999987

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a

>PRK08233 hypothetical protein; Provisional

Probab=97.52  E-value=0.00011  Score=48.54  Aligned_cols=26  Identities=31%  Similarity=0.478  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+|+|.|++||||||+++.+...+.
T Consensus         3 ~~iI~I~G~~GsGKtTla~~L~~~l~   28 (182)
T PRK08233          3 TKIITIAAVSGGGKTTLTERLTHKLK   28 (182)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhhCC
Confidence            46789999999999999999998874

>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.52  E-value=8.8e-05  Score=51.00  Aligned_cols=23  Identities=26%  Similarity=0.420  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ++++|+||||+||||+++++...
T Consensus        26 ~i~~ivGpNGaGKSTll~~i~~~   48 (212)
T cd03274          26 SFSAIVGPNGSGKSNVIDSMLFV   48 (212)
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999998743

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.52  E-value=4.6e-05  Score=64.74  Aligned_cols=29  Identities=21%  Similarity=0.393  Sum_probs=27.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+|++++|+|+||+||||+++.+++...
T Consensus       786 i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~  814 (1394)
T TIGR00956       786 VKPGTLTALMGASGAGKTTLLNVLAERVT  814 (1394)
T ss_pred             EECCEEEEEECCCCCCHHHHHHHHhCCCC
Confidence            67899999999999999999999999876

>PLN03140 ABC transporter G family member; Provisional

Probab=97.52  E-value=4.6e-05  Score=65.01  Aligned_cols=32  Identities=19%  Similarity=0.208  Sum_probs=29.0

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..++|++++|+|++||||||+++++++.+.+.
T Consensus       187 ~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~  218 (1470)
T PLN03140        187 IIKPSRMTLLLGPPSSGKTTLLLALAGKLDPS  218 (1470)
T ss_pred             EEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCC
Confidence            36789999999999999999999999998664

>PRK00889 adenylylsulfate kinase; Provisional

Probab=97.52  E-value=0.00015  Score=47.98  Aligned_cols=29  Identities=28%  Similarity=0.374  Sum_probs=25.7

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .++++++++|.+|+||||+++.+...+..
T Consensus         2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~   30 (175)
T PRK00889          2 QRGVTVWFTGLSGAGKTTIARALAEKLRE   30 (175)
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            35789999999999999999999998853

>TIGR00150 HI0065_YjeE ATPase, YjeE family

Probab=97.50  E-value=0.00015  Score=46.59  Aligned_cols=30  Identities=30%  Similarity=0.397  Sum_probs=26.4

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...+.++++.|+.|+||||+++.+++.+..
T Consensus        19 l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~   48 (133)
T TIGR00150        19 LDFGTVVLLKGDLGAGKTTLVQGLLQGLGI   48 (133)
T ss_pred             CCCCCEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence            356889999999999999999999998754

Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=97.50  E-value=0.00013  Score=48.39  Aligned_cols=28  Identities=21%  Similarity=0.323  Sum_probs=23.9

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      -.+++++++|+||+||||+++.+.....
T Consensus        33 l~~k~~vl~G~SGvGKSSLiN~L~~~~~   60 (161)
T PF03193_consen   33 LKGKTSVLLGQSGVGKSSLINALLPEAK   60 (161)
T ss_dssp             HTTSEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3469999999999999999998888643

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.49  E-value=0.00013  Score=46.36  Aligned_cols=23  Identities=30%  Similarity=0.613  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +|+++|++||||||+++.+...+
T Consensus         1 lii~~G~pgsGKSt~a~~l~~~~   23 (143)
T PF13671_consen    1 LIILCGPPGSGKSTLAKRLAKRL   23 (143)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHS
T ss_pred             CEEEECCCCCCHHHHHHHHHHHC
Confidence            47899999999999999888655

...

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.49  E-value=0.00014  Score=41.30  Aligned_cols=23  Identities=39%  Similarity=0.676  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++++|++|+||||+++.+...+
T Consensus         1 ~i~i~G~~gsGKst~~~~l~~~l   23 (69)
T cd02019           1 IIAITGGSGSGKSTVAKKLAEQL   23 (69)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            37899999999999999998886

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes

Probab=97.47  E-value=9.9e-05  Score=52.71  Aligned_cols=26  Identities=19%  Similarity=0.475  Sum_probs=22.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +++|.|++||||||+++.+.+.+...
T Consensus         1 iigI~G~sGsGKSTl~~~L~~ll~~~   26 (273)
T cd02026           1 IIGVAGDSGCGKSTFLRRLTSLFGSD   26 (273)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhhCCC
Confidence            47899999999999999999887644

This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=97.47  E-value=0.00012  Score=53.93  Aligned_cols=32  Identities=25%  Similarity=0.484  Sum_probs=27.9

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .+..+..++|+|++||||||+++.+++++...
T Consensus       158 ~v~~~~nilI~G~tGSGKTTll~aLl~~i~~~  189 (344)
T PRK13851        158 CVVGRLTMLLCGPTGSGKTTMSKTLISAIPPQ  189 (344)
T ss_pred             HHHcCCeEEEECCCCccHHHHHHHHHcccCCC
Confidence            35678899999999999999999999987653

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.47  E-value=0.00015  Score=45.18  Aligned_cols=23  Identities=35%  Similarity=0.739  Sum_probs=21.2

Q ss_pred             EEEEcCCCCchHHHHHHHHHHhh
Q psy7658          44 VVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ++|.|++|+|||++++.+++.+.
T Consensus         1 ill~G~~G~GKT~l~~~la~~l~   23 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQYLG   23 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHHTT
T ss_pred             CEEECcCCCCeeHHHHHHHhhcc
Confidence            57999999999999999999975

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=97.46  E-value=0.00015  Score=52.82  Aligned_cols=32  Identities=25%  Similarity=0.307  Sum_probs=27.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      .+++++++|++|+||||++..++..+...+++
T Consensus       113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~  144 (318)
T PRK10416        113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKK  144 (318)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCe
Confidence            57899999999999999999999998765443

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=97.46  E-value=0.00017  Score=48.28  Aligned_cols=27  Identities=33%  Similarity=0.391  Sum_probs=23.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      -.+++|+|++||||||+++.++..+..
T Consensus         6 ~~ii~ivG~sgsGKTTLi~~li~~l~~   32 (173)
T PRK10751          6 IPLLAIAAWSGTGKTTLLKKLIPALCA   32 (173)
T ss_pred             ceEEEEECCCCChHHHHHHHHHHHHhh
Confidence            347899999999999999999998865

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.46  E-value=0.00011  Score=47.12  Aligned_cols=23  Identities=35%  Similarity=0.582  Sum_probs=20.9

Q ss_pred             EEEEcCCCCchHHHHHHHHHHhh
Q psy7658          44 VVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ++|+|++|+||||+++.+++.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~~~   24 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEEFD   24 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhcCC
Confidence            78999999999999999998864

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT)

Probab=97.46  E-value=0.00017  Score=47.90  Aligned_cols=25  Identities=20%  Similarity=0.545  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +.+|+++|++||||||+.+.+...+
T Consensus         2 ~~~i~l~G~~gsGKst~a~~l~~~~   26 (175)
T cd00227           2 GRIIILNGGSSAGKSSIARALQSVL   26 (175)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhh
Confidence            5789999999999999999888765

Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.

>PRK05541 adenylylsulfate kinase; Provisional

Probab=97.45  E-value=0.00018  Score=47.64  Aligned_cols=28  Identities=36%  Similarity=0.494  Sum_probs=24.9

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+..|+++|++||||||+++.+...+.
T Consensus         5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~   32 (176)
T PRK05541          5 PNGYVIWITGLAGSGKTTIAKALYERLK   32 (176)
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999999988875

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.45  E-value=0.00016  Score=44.88  Aligned_cols=22  Identities=45%  Similarity=0.549  Sum_probs=20.2

Q ss_pred             EEEEcCCCCchHHHHHHHHHHh
Q psy7658          44 VVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      |+|.|.+|+||||+++.+...+
T Consensus         1 I~i~G~~GsGKtTia~~L~~~~   22 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAERL   22 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHHH
Confidence            6899999999999999988885

...

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=97.43  E-value=0.00026  Score=44.12  Aligned_cols=27  Identities=22%  Similarity=0.381  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+..+.|.|++|+|||++++.+...+.
T Consensus        18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~   44 (151)
T cd00009          18 PPKNLLLYGPPGTGKTTLARAIANELF   44 (151)
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence            467899999999999999999998874

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>PLN02165 adenylate isopentenyltransferase

Probab=97.42  E-value=0.00022  Score=52.28  Aligned_cols=29  Identities=31%  Similarity=0.466  Sum_probs=25.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      -..+.+++|+|++|||||+++..+++.+.
T Consensus        40 ~~~g~iivIiGPTGSGKStLA~~LA~~l~   68 (334)
T PLN02165         40 NCKDKVVVIMGATGSGKSRLSVDLATRFP   68 (334)
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHHHHcC
Confidence            35578999999999999999999888864

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=97.40  E-value=0.0002  Score=52.67  Aligned_cols=32  Identities=25%  Similarity=0.556  Sum_probs=26.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +....+..++|+|++||||||+++.+++.+..
T Consensus       117 ~~~~~~g~ili~G~tGSGKTT~l~al~~~i~~  148 (343)
T TIGR01420       117 LAERPRGLILVTGPTGSGKSTTLASMIDYINK  148 (343)
T ss_pred             HHhhcCcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence            33455789999999999999999999987753

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.39  E-value=0.00018  Score=49.18  Aligned_cols=26  Identities=35%  Similarity=0.410  Sum_probs=22.7

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ..+..++|+|++||||||+++.+...
T Consensus        11 ~~~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         11 AKPLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence            45788999999999999999988754

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=97.38  E-value=0.00021  Score=47.50  Aligned_cols=24  Identities=25%  Similarity=0.486  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++++.|++||||||+++.+...+
T Consensus         4 ~ii~i~G~~GsGKsTl~~~l~~~~   27 (188)
T TIGR01360         4 KIIFIVGGPGSGKGTQCEKIVEKY   27 (188)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999888443

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein

Probab=97.38  E-value=8.5e-05  Score=63.20  Aligned_cols=29  Identities=21%  Similarity=0.294  Sum_probs=26.8

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...+|++++|+|+|||||||+++.+.+..
T Consensus        83 ~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~  111 (1394)
T TIGR00956        83 LIKPGELTVVLGRPGSGCSTLLKTIASNT  111 (1394)
T ss_pred             EEECCEEEEEECCCCCCHHHHHHHHhCCC
Confidence            36789999999999999999999999986

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.36  E-value=0.00027  Score=54.21  Aligned_cols=31  Identities=23%  Similarity=0.253  Sum_probs=27.1

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      .+++++++|++|+||||++..++..+....|
T Consensus       255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G  285 (484)
T PRK06995        255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHG  285 (484)
T ss_pred             CCcEEEEECCCCccHHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999998865544

>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family

Probab=97.36  E-value=0.00016  Score=47.30  Aligned_cols=23  Identities=30%  Similarity=0.495  Sum_probs=20.1

Q ss_pred             EEEEcCCCCchHHHHHHHHHHhh
Q psy7658          44 VVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ++++|++||||||+++.+.+.+.
T Consensus         1 i~l~G~~GsGKSTla~~l~~~l~   23 (163)
T TIGR01313         1 FVLMGVAGSGKSTIASALAHRLG   23 (163)
T ss_pred             CEEECCCCCCHHHHHHHHHHhcC
Confidence            46899999999999999888763

This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.

>PRK06696 uridine kinase; Validated

Probab=97.35  E-value=0.00023  Score=49.16  Aligned_cols=28  Identities=25%  Similarity=0.268  Sum_probs=24.5

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ..-+|+|.|.+||||||+++.+...+..
T Consensus        21 ~~~iI~I~G~sgsGKSTlA~~L~~~l~~   48 (223)
T PRK06696         21 RPLRVAIDGITASGKTTFADELAEEIKK   48 (223)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3568999999999999999999988853

>PRK03846 adenylylsulfate kinase; Provisional

Probab=97.34  E-value=0.00027  Score=47.89  Aligned_cols=29  Identities=28%  Similarity=0.341  Sum_probs=25.6

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ..+.+++++|.+|+||||+++.+.+.+..
T Consensus        22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~   50 (198)
T PRK03846         22 HKGVVLWFTGLSGSGKSTVAGALEEALHE   50 (198)
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            45789999999999999999999987743

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.34  E-value=0.00024  Score=48.01  Aligned_cols=26  Identities=19%  Similarity=0.390  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+.+++|+||+|+||+|+.+.++...
T Consensus         3 ~~~~ivl~GpsG~GK~tl~~~l~~~~   28 (186)
T PRK14737          3 SPKLFIISSVAGGGKSTIIQALLEEH   28 (186)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence            46789999999999999999988765

>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B

Probab=97.34  E-value=0.00025  Score=44.36  Aligned_cols=28  Identities=43%  Similarity=0.602  Sum_probs=20.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+.+++|.|++|+|||++++.+...+..
T Consensus         3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~   30 (131)
T PF13401_consen    3 SQRILVISGPPGSGKTTLIKRLARQLNA   30 (131)
T ss_dssp             ----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred             CCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence            4678999999999999999998887754

>PRK06762 hypothetical protein; Provisional

Probab=97.33  E-value=0.00028  Score=46.27  Aligned_cols=24  Identities=42%  Similarity=0.671  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+++++|++||||||+++.+...+
T Consensus         3 ~li~i~G~~GsGKST~A~~L~~~l   26 (166)
T PRK06762          3 TLIIIRGNSGSGKTTIAKQLQERL   26 (166)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            578999999999999999988776

>PLN02796 D-glycerate 3-kinase

Probab=97.33  E-value=0.00023  Score=52.40  Aligned_cols=26  Identities=31%  Similarity=0.364  Sum_probs=23.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +++|+|++||||||+++.+.+.+...
T Consensus       102 iIGI~G~sGSGKSTLa~~L~~lL~~~  127 (347)
T PLN02796        102 VIGISAPQGCGKTTLVFALVYLFNAT  127 (347)
T ss_pred             EEEEECCCCCcHHHHHHHHHHHhccc
Confidence            48999999999999999999998654

>PRK06547 hypothetical protein; Provisional

Probab=97.33  E-value=0.00035  Score=46.67  Aligned_cols=30  Identities=37%  Similarity=0.454  Sum_probs=24.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +.......|+|.|++||||||+++.+...+
T Consensus        10 ~~~~~~~~i~i~G~~GsGKTt~a~~l~~~~   39 (172)
T PRK06547         10 LCGGGMITVLIDGRSGSGKTTLAGALAART   39 (172)
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            334456778899999999999999988764

>PRK14527 adenylate kinase; Provisional

Probab=97.32  E-value=0.00031  Score=47.29  Aligned_cols=28  Identities=32%  Similarity=0.472  Sum_probs=23.5

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+.++++++.|++||||||+++.+...+
T Consensus         3 ~~~~~~i~i~G~pGsGKsT~a~~La~~~   30 (191)
T PRK14527          3 QTKNKVVIFLGPPGAGKGTQAERLAQEL   30 (191)
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3457899999999999999999887444

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=97.31  E-value=0.00033  Score=49.81  Aligned_cols=30  Identities=23%  Similarity=0.429  Sum_probs=25.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ......++|+|++|+||||+++.++..+..
T Consensus        77 ~~~~GlilisG~tGSGKTT~l~all~~i~~  106 (264)
T cd01129          77 EKPHGIILVTGPTGSGKTTTLYSALSELNT  106 (264)
T ss_pred             hcCCCEEEEECCCCCcHHHHHHHHHhhhCC
Confidence            345668999999999999999988887753

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains

Probab=97.27  E-value=0.00033  Score=49.10  Aligned_cols=28  Identities=25%  Similarity=0.382  Sum_probs=24.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..+.+|+|+||+|||+++..|...+...
T Consensus        22 ~~~~~i~G~NGsGKStll~ai~~~l~~~   49 (247)
T cd03275          22 DRFTCIIGPNGSGKSNLMDAISFVLGEK   49 (247)
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence            3589999999999999999999888543

Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for

>PRK06217 hypothetical protein; Validated

Probab=97.27  E-value=0.00031  Score=46.98  Aligned_cols=25  Identities=32%  Similarity=0.412  Sum_probs=21.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..|+|+|.+||||||+.+.+...+.
T Consensus         2 ~~I~i~G~~GsGKSTla~~L~~~l~   26 (183)
T PRK06217          2 MRIHITGASGSGTTTLGAALAERLD   26 (183)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            3589999999999999999888763

>PRK05057 aroK shikimate kinase I; Reviewed

Probab=97.27  E-value=0.00036  Score=46.42  Aligned_cols=25  Identities=24%  Similarity=0.450  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+.|+|+|++|+||||+.+.+...+
T Consensus         4 ~~~I~liG~~GaGKStl~~~La~~l   28 (172)
T PRK05057          4 KRNIFLVGPMGAGKSTIGRQLAQQL   28 (172)
T ss_pred             CCEEEEECCCCcCHHHHHHHHHHHc
Confidence            4679999999999999999998765

>PLN03140 ABC transporter G family member; Provisional

Probab=97.27  E-value=0.00017  Score=61.64  Aligned_cols=29  Identities=21%  Similarity=0.255  Sum_probs=26.7

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+|++++|+|+|||||||+++.+++...
T Consensus       903 i~~Gel~aL~G~sGaGKTTLL~~LaG~~~  931 (1470)
T PLN03140        903 FRPGVLTALMGVSGAGKTTLMDVLAGRKT  931 (1470)
T ss_pred             EECCeEEEEECCCCCCHHHHHHHHcCCCC
Confidence            57899999999999999999999999864

>PRK00131 aroK shikimate kinase; Reviewed

Probab=97.26  E-value=0.00039  Score=45.45  Aligned_cols=26  Identities=27%  Similarity=0.436  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ++..|+++|++||||||+.+.+...+
T Consensus         3 ~~~~i~l~G~~GsGKstla~~La~~l   28 (175)
T PRK00131          3 KGPNIVLIGFMGAGKSTIGRLLAKRL   28 (175)
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999988876

>TIGR02858 spore_III_AA stage III sporulation protein AA

Probab=97.25  E-value=0.00023  Score=50.82  Aligned_cols=30  Identities=17%  Similarity=0.108  Sum_probs=27.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+++.|++|+||||+++.+++.+.+..|.
T Consensus       112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~  141 (270)
T TIGR02858       112 LNTLIISPPQCGKTTLLRDLARILSTGISQ  141 (270)
T ss_pred             eEEEEEcCCCCCHHHHHHHHhCccCCCCce
Confidence            688999999999999999999999887664

Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.

>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]

Probab=97.24  E-value=0.00026  Score=53.37  Aligned_cols=33  Identities=24%  Similarity=0.431  Sum_probs=30.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      |.+..|+.++++||||||||..+..++++++..
T Consensus        31 f~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~   63 (534)
T COG4172          31 FDIEAGETLALVGESGSGKSVTALSILGLLPSP   63 (534)
T ss_pred             eeecCCCEEEEEecCCCCccHHHHHHHHhcCCC
Confidence            557889999999999999999999999999763

>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.24  E-value=0.00025  Score=51.08  Aligned_cols=35  Identities=20%  Similarity=0.260  Sum_probs=30.5

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      .....+.++-|+||+|||+++++|.++..++.|..
T Consensus        21 ~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I   55 (352)
T COG4148          21 LPARGITALFGPSGSGKTSLINMIAGLTRPDEGRI   55 (352)
T ss_pred             CCCCceEEEecCCCCChhhHHHHHhccCCccccEE
Confidence            44457899999999999999999999999987754

>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes

Probab=97.23  E-value=0.00012  Score=50.80  Aligned_cols=33  Identities=21%  Similarity=0.273  Sum_probs=27.1

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHH-HhhhhCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQ-YLAAVNK   70 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~-~~~~~~g   70 (114)
                      ...+++++|+|++|+||||+++.+.. .+.+..|
T Consensus        28 ~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G   61 (222)
T cd03287          28 AEGGYCQIITGPNMGGKSSYIRQVALITIMAQIG   61 (222)
T ss_pred             ecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCC
Confidence            45689999999999999999999888 4444444

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2

Probab=97.23  E-value=0.00033  Score=46.91  Aligned_cols=24  Identities=50%  Similarity=0.578  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +|+|.|.+||||||+++.+...+.
T Consensus         1 ii~i~G~sgsGKttla~~l~~~l~   24 (179)
T cd02028           1 VVGIAGPSGSGKTTFAKKLSNQLR   24 (179)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999998875

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).

>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]

Probab=97.23  E-value=0.00037  Score=48.24  Aligned_cols=25  Identities=40%  Similarity=0.547  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      -+|+|.|.|||||||+++.+...+.
T Consensus         9 iiIgIaG~SgSGKTTva~~l~~~~~   33 (218)
T COG0572           9 IIIGIAGGSGSGKTTVAKELSEQLG   33 (218)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            4788999999999999999998886

>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]

Probab=97.22  E-value=0.00026  Score=53.99  Aligned_cols=53  Identities=21%  Similarity=0.206  Sum_probs=40.0

Q ss_pred             CCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          21 LSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        21 ~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      .+-|.|....=.+..+- .++|++++|+|++|-||||.++++.+.+.+.-|...
T Consensus        79 e~vHRYg~NgFkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~  132 (591)
T COG1245          79 EVVHRYGVNGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYE  132 (591)
T ss_pred             cceeeccCCceEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCC
Confidence            34677765432333343 467999999999999999999999999988766543

>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes

Probab=97.22  E-value=0.00039  Score=47.60  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=24.2

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....++.++|+|++|+||||+++.+.+..
T Consensus        25 ~~~~~~~~~l~G~n~~GKstll~~i~~~~   53 (204)
T cd03282          25 TRGSSRFHIITGPNMSGKSTYLKQIALLA   53 (204)
T ss_pred             eeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            34567999999999999999999876543

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=97.22  E-value=0.00035  Score=51.28  Aligned_cols=30  Identities=27%  Similarity=0.457  Sum_probs=26.4

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +.....++|+|++||||||+++.++.++..
T Consensus       157 v~~~~nili~G~tgSGKTTll~aL~~~ip~  186 (332)
T PRK13900        157 VISKKNIIISGGTSTGKTTFTNAALREIPA  186 (332)
T ss_pred             HHcCCcEEEECCCCCCHHHHHHHHHhhCCC
Confidence            456788999999999999999999988864

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.21  E-value=0.00043  Score=52.30  Aligned_cols=27  Identities=26%  Similarity=0.308  Sum_probs=23.9

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..+++++++|++|+||||++..+++..
T Consensus       189 ~~g~vi~lvGpnG~GKTTtlakLA~~~  215 (420)
T PRK14721        189 EQGGVYALIGPTGVGKTTTTAKLAARA  215 (420)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            357899999999999999999888764

>PF03215 Rad17: Rad17 cell cycle checkpoint protein

Probab=97.20  E-value=0.00023  Score=55.10  Aligned_cols=58  Identities=26%  Similarity=0.417  Sum_probs=39.7

Q ss_pred             HHHhhcCCCCCCCCeeeeehh--hhhhhch--hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          10 VKKYEGQILGTLSPHLFAIGS--AAYSALA--TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        10 ~~~y~~~~~~~~~phiy~~~~--~~~~~l~--~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +++|+.....++.-|--.+.+  .++..+.  ....++++|+||+||||||+++.++..+..
T Consensus        10 ~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~   71 (519)
T PF03215_consen   10 VEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGF   71 (519)
T ss_pred             chhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCC
Confidence            566777776666655544432  2333322  233678999999999999999999988754

>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2

Probab=97.20  E-value=0.00055  Score=45.75  Aligned_cols=26  Identities=35%  Similarity=0.556  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +..++|+||+|+||+++.+.++..+.
T Consensus         2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~   27 (183)
T PF00625_consen    2 RRPIVLVGPSGSGKSTLAKRLIQEFP   27 (183)
T ss_dssp             SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence            46899999999999999999888654

7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....

>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=97.19  E-value=0.00037  Score=49.51  Aligned_cols=25  Identities=24%  Similarity=0.340  Sum_probs=22.1

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      ...++.++|+|.|||||||+++.++
T Consensus        18 ip~g~~~~vtGvSGsGKStL~~~~l   42 (261)
T cd03271          18 IPLGVLTCVTGVSGSGKSSLINDTL   42 (261)
T ss_pred             ccCCcEEEEECCCCCchHHHHHHHH
Confidence            5679999999999999999998653

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.

>PRK14530 adenylate kinase; Provisional

Probab=97.19  E-value=0.0005  Score=47.13  Aligned_cols=27  Identities=15%  Similarity=0.326  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +..|+|+|++||||||+++.++..+..
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~~~~   29 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEEFGV   29 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346899999999999999999877643

>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family

Probab=97.19  E-value=0.00018  Score=48.38  Aligned_cols=20  Identities=35%  Similarity=0.496  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~   62 (114)
                      +++|+|++|+||||+++.+.
T Consensus         1 ~~~ltG~N~~GKst~l~~i~   20 (185)
T smart00534        1 VVIITGPNMGGKSTYLRQVG   20 (185)
T ss_pred             CEEEECCCCCcHHHHHHHHH
Confidence            36899999999999999887

>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes

Probab=97.18  E-value=0.00017  Score=49.63  Aligned_cols=22  Identities=36%  Similarity=0.511  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      ..++|+|++|+||||+++.+..
T Consensus        30 ~~~~itGpNg~GKStlLk~i~~   51 (213)
T cd03281          30 SIMVITGPNSSGKSVYLKQVAL   51 (213)
T ss_pred             eEEEEECCCCCChHHHHHHHHH
Confidence            7899999999999999999873

The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=97.17  E-value=0.00047  Score=42.35  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=19.8

Q ss_pred             EEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          44 VVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      |+|+|..|+|||++++.+++....
T Consensus         2 I~V~G~~g~GKTsLi~~l~~~~~~   25 (119)
T PF08477_consen    2 IVVLGDSGVGKTSLIRRLCGGEFP   25 (119)
T ss_dssp             EEEECSTTSSHHHHHHHHHHSS--
T ss_pred             EEEECcCCCCHHHHHHHHhcCCCc
Confidence            789999999999999988876544

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=97.17  E-value=0.0006  Score=50.80  Aligned_cols=31  Identities=23%  Similarity=0.248  Sum_probs=26.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ...+.+++++||+|+||||++..++..+...
T Consensus       134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~  164 (374)
T PRK14722        134 MERGGVFALMGPTGVGKTTTTAKLAARCVMR  164 (374)
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            3458899999999999999999998876543

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=97.17  E-value=0.00047  Score=48.70  Aligned_cols=30  Identities=30%  Similarity=0.502  Sum_probs=27.0

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..+..++++|++||||||+++.++..+...
T Consensus       125 ~~~~~ili~G~tGSGKTT~l~all~~i~~~  154 (270)
T PF00437_consen  125 RGRGNILISGPTGSGKTTLLNALLEEIPPE  154 (270)
T ss_dssp             HTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred             ccceEEEEECCCccccchHHHHHhhhcccc
Confidence            457899999999999999999999988766

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]

Probab=97.17  E-value=0.00036  Score=47.35  Aligned_cols=32  Identities=13%  Similarity=0.279  Sum_probs=27.7

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ++..++++=++||+||||||++-.+.+++...
T Consensus        21 qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~s   52 (248)
T COG4138          21 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGS   52 (248)
T ss_pred             ccccceEEEEECCCCccHHHHHHHHhCCCCCC
Confidence            46679999999999999999999999987543

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=97.16  E-value=0.00051  Score=48.21  Aligned_cols=26  Identities=31%  Similarity=0.579  Sum_probs=23.2

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...++|.|++|+||||+++.+...+.
T Consensus        43 ~~~~~l~G~~G~GKTtl~~~l~~~l~   68 (269)
T TIGR03015        43 EGFILITGEVGAGKTTLIRNLLKRLD   68 (269)
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence            55899999999999999999988765

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>cd01120 RecA-like_NTPases RecA-like NTPases

Probab=97.16  E-value=0.0005  Score=43.99  Aligned_cols=26  Identities=27%  Similarity=0.427  Sum_probs=22.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +++|.|++|+|||+++..++......
T Consensus         1 ~~~i~G~~G~GKT~l~~~i~~~~~~~   26 (165)
T cd01120           1 LILVFGPTGSGKTTLALQLALNIATK   26 (165)
T ss_pred             CeeEeCCCCCCHHHHHHHHHHHHHhc
Confidence            36899999999999999998888653

This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.

>KOG0059|consensus

Probab=97.16  E-value=0.00023  Score=58.17  Aligned_cols=41  Identities=22%  Similarity=0.259  Sum_probs=35.3

Q ss_pred             hhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          32 AYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        32 ~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+  .+.+++|.++.|++|+||||.++++.+...+.+|..
T Consensus       580 Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a  622 (885)
T KOG0059|consen  580 AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEA  622 (885)
T ss_pred             hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceE
Confidence            55554  478899999999999999999999999999887753

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=97.16  E-value=0.00045  Score=45.51  Aligned_cols=30  Identities=33%  Similarity=0.530  Sum_probs=20.6

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..+..++|.|++|+|||++++.++..+...
T Consensus        22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~   51 (185)
T PF13191_consen   22 GSPRNLLLTGESGSGKTSLLRALLDRLAER   51 (185)
T ss_dssp             -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            447889999999999999999888877665

>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+)

Probab=97.16  E-value=0.0004  Score=47.03  Aligned_cols=23  Identities=48%  Similarity=0.613  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +|+|.|.+||||||+++.+...+
T Consensus         1 ii~i~G~sgsGKTtla~~l~~~~   23 (187)
T cd02024           1 IVGISGVTNSGKTTLAKLLQRIL   23 (187)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHc
Confidence            47899999999999999998876

This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.

>TIGR00455 apsK adenylylsulfate kinase (apsK)

Probab=97.16  E-value=0.00059  Score=45.55  Aligned_cols=29  Identities=28%  Similarity=0.382  Sum_probs=26.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...+.+++++|++|+||||+++.+.+.+.
T Consensus        15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~   43 (184)
T TIGR00455        15 GHRGVVIWLTGLSGSGKSTIANALEKKLE   43 (184)
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            35678999999999999999999999875

Important residue (active site in E.coli) is residue 100 of the seed alignment.

>TIGR00101 ureG urease accessory protein UreG

Probab=97.16  E-value=0.00051  Score=46.82  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .++|+|++|+||||+++.+++.+...
T Consensus         3 ~i~i~G~~GsGKTTll~~l~~~l~~~   28 (199)
T TIGR00101         3 KIGVAGPVGSGKTALIEALTRALRQK   28 (199)
T ss_pred             EEEEECCCCCCHHHHHHHHHHhhCcC
Confidence            57899999999999999999887643

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor

Probab=97.16  E-value=0.00046  Score=43.92  Aligned_cols=23  Identities=39%  Similarity=0.729  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +|+|+|++||||||+++.+...+
T Consensus         1 ~I~i~G~~GsGKst~a~~la~~~   23 (147)
T cd02020           1 IIAIDGPAGSGKSTVAKLLAKKL   23 (147)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999988765

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=97.14  E-value=0.00033  Score=44.84  Aligned_cols=27  Identities=26%  Similarity=0.413  Sum_probs=21.8

Q ss_pred             EEEEcCCCCchHHHHHHHH--HHhhhhCC
Q psy7658          44 VVISGESGSGKTECTKLVM--QYLAAVNK   70 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~--~~~~~~~g   70 (114)
                      ++++|++|+||||+++.+.  +......+
T Consensus         2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~   30 (170)
T cd01876           2 IAFAGRSNVGKSSLINALTNRKKLARTSK   30 (170)
T ss_pred             EEEEcCCCCCHHHHHHHHhcCCceeeecC
Confidence            6899999999999999998  55544433

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=97.14  E-value=0.00059  Score=49.36  Aligned_cols=30  Identities=23%  Similarity=0.429  Sum_probs=25.9

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ......++|+|++||||||+++.+++++..
T Consensus       129 v~~~~~ilI~G~tGSGKTTll~al~~~i~~  158 (299)
T TIGR02782       129 VLARKNILVVGGTGSGKTTLANALLAEIAK  158 (299)
T ss_pred             HHcCCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence            345678999999999999999999998764

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]

Probab=97.14  E-value=7.5e-05  Score=51.25  Aligned_cols=36  Identities=17%  Similarity=0.260  Sum_probs=31.2

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      .+..++.-+|+||+|+||||++..|.+.-.+..|+.
T Consensus        27 ~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v   62 (249)
T COG4674          27 SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEV   62 (249)
T ss_pred             EecCCeEEEEECCCCCCceeeeeeecccCCCCcceE
Confidence            367899999999999999999999999888776643

>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains

Probab=97.14  E-value=0.00041  Score=47.39  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=19.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~   62 (114)
                      .+++|+|+||+||||+++.+.
T Consensus        23 g~~~i~G~NGsGKTTLl~ai~   43 (204)
T cd03240          23 PLTLIVGQNGAGKTTIIEALK   43 (204)
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            399999999999999999885

The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.

>PRK03839 putative kinase; Provisional

Probab=97.13  E-value=0.00058  Score=45.39  Aligned_cols=23  Identities=39%  Similarity=0.723  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|+|++||||||+.+.+...+
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~~   24 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEKL   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999998876

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.13  E-value=0.00053  Score=46.08  Aligned_cols=23  Identities=30%  Similarity=0.507  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++|+|++||||||.++.+...+
T Consensus         2 riiilG~pGaGK~T~A~~La~~~   24 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKKL   24 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998875

>KOG0054|consensus

Probab=97.13  E-value=0.00044  Score=58.58  Aligned_cols=37  Identities=16%  Similarity=0.242  Sum_probs=33.1

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      .++++|.|+|+|.+||||||++..+.++..+..|+..
T Consensus      1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ 1198 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEIL 1198 (1381)
T ss_pred             EEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEE
Confidence            3678999999999999999999999999998877653

>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A

Probab=97.13  E-value=0.00061  Score=45.30  Aligned_cols=28  Identities=29%  Similarity=0.367  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...+.+|.|++|+||||++..+.-.+..
T Consensus        18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~   45 (202)
T PF13476_consen   18 SPGLNVIYGPNGSGKSTILEAIRYALGG   45 (202)
T ss_dssp             -SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence            4578999999999999999988777644

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=97.12  E-value=0.0004  Score=45.13  Aligned_cols=26  Identities=27%  Similarity=0.330  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ..+.++|++||||||+++.+.+....
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~~~   27 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEEIR   27 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCCCC
Confidence            35789999999999999988875543

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.12  E-value=0.00077  Score=43.56  Aligned_cols=26  Identities=31%  Similarity=0.388  Sum_probs=23.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ++.|+|++++||||+++.++..+...
T Consensus         2 vv~VvG~~~sGKTTl~~~Li~~l~~~   27 (140)
T PF03205_consen    2 VVQVVGPKNSGKTTLIRKLINELKRR   27 (140)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhHc
Confidence            58899999999999999999988643

>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop

Probab=97.11  E-value=0.00075  Score=42.79  Aligned_cols=31  Identities=26%  Similarity=0.406  Sum_probs=25.4

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .+.+.+|++.|+-|+||||+.|.+++.+...
T Consensus        12 l~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~   42 (123)
T PF02367_consen   12 LKPGDVILLSGDLGAGKTTFVRGLARALGID   42 (123)
T ss_dssp             HSS-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence            4678999999999999999999999888443

They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.

>KOG0061|consensus

Probab=97.11  E-value=0.00041  Score=54.69  Aligned_cols=30  Identities=30%  Similarity=0.402  Sum_probs=27.5

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+++++.+|+|++||||||+++++++....
T Consensus        53 ~~~Gel~AimG~SGsGKtTLL~~Lagr~~~   82 (613)
T KOG0061|consen   53 AKPGELLAIMGPSGSGKTTLLNALAGRLNG   82 (613)
T ss_pred             EecCeEEEEECCCCCCHHHHHHHHhccccC
Confidence            467999999999999999999999998864

>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS)

Probab=97.10  E-value=0.00056  Score=44.46  Aligned_cols=24  Identities=33%  Similarity=0.505  Sum_probs=21.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +++++|.+|+||||+++.+.+.+.
T Consensus         1 ~i~i~G~~GsGKSTla~~L~~~l~   24 (149)
T cd02027           1 VIWLTGLSGSGKSTIARALEEKLF   24 (149)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999999875

The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.

>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []

Probab=97.08  E-value=0.00065  Score=43.17  Aligned_cols=22  Identities=32%  Similarity=0.572  Sum_probs=20.5

Q ss_pred             EEEEcCCCCchHHHHHHHHHHh
Q psy7658          44 VVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ++|.|++|+|||++++.++..+
T Consensus         2 vlL~G~~G~GKt~l~~~la~~~   23 (139)
T PF07728_consen    2 VLLVGPPGTGKTTLARELAALL   23 (139)
T ss_dssp             EEEEESSSSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999999887

The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=97.08  E-value=0.00053  Score=42.24  Aligned_cols=21  Identities=24%  Similarity=0.308  Sum_probs=19.2

Q ss_pred             EEEEcCCCCchHHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~   64 (114)
                      |++.|.+|+||||+++.+++.
T Consensus         2 V~iiG~~~~GKSTlin~l~~~   22 (116)
T PF01926_consen    2 VAIIGRPNVGKSTLINALTGK   22 (116)
T ss_dssp             EEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEECCCCCCHHHHHHHHhcc
Confidence            789999999999999999863

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>cd01854 YjeQ_engC YjeQ/EngC

Probab=97.08  E-value=0.00058  Score=49.04  Aligned_cols=31  Identities=23%  Similarity=0.361  Sum_probs=26.4

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      .++.++++|++|+||||+++.+++......|
T Consensus       160 ~~k~~~~~G~sg~GKSTlin~l~~~~~~~~g  190 (287)
T cd01854         160 KGKTSVLVGQSGVGKSTLINALLPDLDLATG  190 (287)
T ss_pred             ccceEEEECCCCCCHHHHHHHHhchhhcccc
Confidence            3689999999999999999999988765544

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	114
3l9i_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant		7e-28
2bkh_A	814	Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Struc		7e-28
2bki_A	858	Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal St		7e-28
4e7s_A	798	Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke Stat		7e-28
2v26_A	784	Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) L		7e-28
2vas_A	788	Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigo		8e-28
4anj_A	1052	Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke St		8e-28
4e7z_A	798	Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal F		8e-28
2x51_A	789	M6 Delta Insert1 Length = 789		8e-28
4dbp_A	814	Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal		1e-27
4dbr_A	786	Myosin Vi D179y (md) Pre-powerstroke State Length =		1e-27
4dbq_A	788	Myosin Vi D179y (md-insert2-cam, Delta-insert1) Pos		1e-27
1oe9_A	795	Crystal Structure Of Myosin V Motor With Essential		8e-27
2dfs_A	1080	3-D Structure Of Myosin-V Inhibited State Length =		9e-27
1w9k_A	770	Dictyostelium Discoideum Myosin Ii Motor Domain S45		1e-26
2jhr_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-26
2y9e_X	758	Structural Basis For The Allosteric Interference Of		1e-26
2y0r_X	758	Structural Basis For The Allosteric Interference Of		1e-26
1mmn_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		1e-26
1jwy_A	776	Crystal Structure Of The Dynamin A Gtpase Domain Co		1e-26
1fmv_A	761	Crystal Structure Of The Apo Motor Domain Of Dictyo		1e-26
1w9l_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		1e-26
3mnq_A	788	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-26
1mma_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		1e-26
1mmd_A	762	Truncated Head Of Myosin From Dictyostelium Discoid		1e-26
2aka_A	776	Structure Of The Nucleotide-Free Myosin Ii Motor Do		1e-26
1mmg_A	762	X-Ray Structures Of The Mgadp, Mgatpgammas, And Mga		1e-26
1d0x_A	761	Dictyostelium Myosin S1dc (Motor Domain Fragment) C		1e-26
2xel_A	776	Molecular Mechanism Of Pentachloropseudilin Mediate		1e-26
1w9j_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		1e-26
1lvk_A	762	X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N		1e-26
1yv3_A	762	The Structural Basis Of Blebbistatin Inhibition And		1e-26
1w9i_A	770	Myosin Ii Dictyostelium Discoideum Motor Domain S45		1e-26
2x9h_A	695	Crystal Structure Of Myosin-2 Motor Domain In Compl		1e-26
2xo8_A	776	Crystal Structure Of Myosin-2 In Complex With Tribr		1e-26
3mkd_A	692	Crystal Structure Of Myosin-2 Dictyostelium Discoid		1e-26
3myh_X	762	Insights Into The Importance Of Hydrogen Bonding In		3e-26
1w8j_A	766	Crystal Structure Of Myosin V Motor Domain - Nucleo		3e-26
1g8x_A	1010	Structure Of A Genetically Engineered Molecular Mot		5e-26
1lkx_A	697	Motor Domain Of Myoe, A Class-I Myosin Length = 697		1e-25
4a7f_C	697	Structure Of The Actin-Tropomyosin-Myosin Complex (		1e-25
2os8_A	840	Rigor-Like Structures Of Muscle Myosins Reveal Key		3e-25
4db1_A	783	Cardiac Human Myosin S1dc, Beta Isoform Complexed W		1e-24
2w4g_M	840	Isometrically Contracting Insect Asynchronous Fligh		1e-23
2ec6_A	838	Placopecten Striated Muscle Myosin Ii Length = 838		1e-23
2ycu_A	995	Crystal Structure Of Human Non Muscle Myosin 2c In		1e-23
1b7t_A	835	Myosin Digested By Papain Length = 835		1e-23
1dfk_A	830	Nucleotide-Free Scallop Myosin S1-Near Rigor State		1e-23
1qvi_A	840	Crystal Structure Of Scallop Myosin S1 In The Pre-P		1e-23
1kk7_A	837	Scallop Myosin In The Near Rigor Conformation Lengt		1e-23
1dfl_A	831	Scallop Myosin S1 Complexed With Mgadp:vanadate-Tra		1e-23
1br1_A	820	Smooth Muscle Myosin Motor Domain-Essential Light C		2e-23
1br2_A	791	Smooth Muscle Myosin Motor Domain Complexed With Mg		2e-23
3i5g_A	839	Crystal Structure Of Rigor-Like Squid Myosin S1 Len		4e-23
3dtp_B	973	Tarantula Heavy Meromyosin Obtained By Flexible Doc		6e-23
3dtp_A	971	Tarantula Heavy Meromyosin Obtained By Flexible Doc		6e-23
3j04_A	909	Em Structure Of The Heavy Meromyosin Subfragment Of		7e-23
1i84_S	1184	Cryo-Em Structure Of The Heavy Meromyosin Subfragme		1e-22
2mys_A	843	Myosin Subfragment-1, Alpha Carbon Coordinates Only		2e-21
1m8q_A	840	Molecular Models Of Averaged Rigor Crossbridges Fro		2e-21

>pdb|3L9I|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) L310g Mutant Crystal Structure Length = 814

Iteration: 1
 Score =  118 bits (296), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 105 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 164
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 165 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215

>pdb|2BKH|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2) Crystal Structure Length = 814

Iteration: 1
 Score =  118 bits (296), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 105 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 164
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 165 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215

>pdb|2BKI|A Chain A, Myosin Vi Nucleotide-Free (Mdinsert2-Iq) Crystal Structure Length = 858

Iteration: 1
 Score =  118 bits (296), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 106 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 166 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 216

>pdb|4E7S|A Chain A, Myosin Vi D23r I24r R569e (Md) Pre-Powerstroke State Length = 798

Iteration: 1
 Score =  118 bits (296), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 115 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 174
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 175 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 225

>pdb|2V26|A Chain A, Myosin Vi (Md) Pre-Powerstroke State (Mg.Adp.Vo4) Length = 784

Iteration: 1
 Score =  118 bits (296), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 102 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 162 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 212

>pdb|2VAS|A Chain A, Myosin Vi (Md-Insert2-Cam, Delta-Insert1) Post-Rigor State Length = 788

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 105 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 164
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 165 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215

>pdb|4ANJ|A Chain A, Myosin Vi (Mdinsert2-Gfp Fusion) Pre-Powerstroke State (Mg.Adp.Alf4) Length = 1052

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 106 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 166 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 216

>pdb|4E7Z|A Chain A, Myosin Vi (Md) Pre-Powerstroke State, P21 Crystal Form Length = 798

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 115 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 174
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 175 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 225

>pdb|2X51|A Chain A, M6 Delta Insert1 Length = 789

Iteration: 1
 Score =  118 bits (296), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 106 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 165
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 166 RYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 216

>pdb|4DBP|A Chain A, Myosin Vi Nucleotide-free (mdinsert2) D179y Crystal Structure Length = 814

Iteration: 1
 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 105 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 164
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 165 RYLTESYGTGQD-IYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215

>pdb|4DBR|A Chain A, Myosin Vi D179y (md) Pre-powerstroke State Length = 786

Iteration: 1
 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 103 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 162
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 163 RYLTESYGTGQD-IYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 213

>pdb|4DBQ|A Chain A, Myosin Vi D179y (md-insert2-cam, Delta-insert1) Post-rigor State Length = 788

Iteration: 1
 Score =  117 bits (294), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 56/112 (50%), Positives = 83/112 (74%), Gaps = 2/112 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVM 62
           +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK V+
Sbjct: 105 IYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 164
Query: 63  QYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF E
Sbjct: 165 RYLTESYGTGQD-IYDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE 215

>pdb|1OE9|A Chain A, Crystal Structure Of Myosin V Motor With Essential Light Chain - Nucleotide-Free Length = 795

Iteration: 1
 Score =  115 bits (287), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 52/113 (46%), Positives = 78/113 (69%), Gaps = 2/113 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +YG D++  Y GQ +G + PH+FA+   AY  +A    NQ +++SGESG+GKT   K  M
Sbjct: 118 IYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177
Query: 63  QYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +Y A V+ S S   + E++L ++P++ES GNAKT RNDNSSRFGK++++ F +
Sbjct: 178 RYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDK 230

>pdb|2DFS|A Chain A, 3-D Structure Of Myosin-V Inhibited State Length = 1080

Iteration: 1
 Score =  115 bits (287), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 52/113 (46%), Positives = 78/113 (69%), Gaps = 2/113 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +YG D++  Y GQ +G + PH+FA+   AY  +A    NQ +++SGESG+GKT   K  M
Sbjct: 118 IYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177
Query: 63  QYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +Y A V+ S S   + E++L ++P++ES GNAKT RNDNSSRFGK++++ F +
Sbjct: 178 RYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDK 230

>pdb|1W9K|A Chain A, Dictyostelium Discoideum Myosin Ii Motor Domain S456e With Bound Mgadp-Befx Length = 770

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|2JHR|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentabromopseudilin Length = 788

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 145 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 204
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 205 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258

>pdb|2Y9E|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246

>pdb|2Y0R|X Chain X, Structural Basis For The Allosteric Interference Of Myosin Function By Mutants G680a And G680v Of Dictyostelium Myosin-2 Length = 758

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246

>pdb|1MMN|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|1JWY|A Chain A, Crystal Structure Of The Dynamin A Gtpase Domain Complexed With Gdp, Determined As Myosin Fusion Length = 776

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 145 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 204
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 205 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258

>pdb|1FMV|A Chain A, Crystal Structure Of The Apo Motor Domain Of Dictyostellium Myosin Ii Length = 761

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|1W9L|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456e Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|3MNQ|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp- Metavanadate And Resveratrol Length = 788

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 145 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 204
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 205 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258

>pdb|1MMA|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|1MMD|A Chain A, Truncated Head Of Myosin From Dictyostelium Discoideum Complexed With Mgadp-Bef3 Length = 762

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|2AKA|A Chain A, Structure Of The Nucleotide-Free Myosin Ii Motor Domain From Dictyostelium Discoideum Fused To The Gtpase Domain Of Dynamin 1 From Rattus Norvegicus Length = 776

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 145 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 204
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 205 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 258

>pdb|1MMG|A Chain A, X-Ray Structures Of The Mgadp, Mgatpgammas, And Mgamppnp Complexes Of The Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|1D0X|A Chain A, Dictyostelium Myosin S1dc (Motor Domain Fragment) Complexed With M-Nitrophenyl Aminoethyldiphosphate Beryllium Trifluoride. Length = 761

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|2XEL|A Chain A, Molecular Mechanism Of Pentachloropseudilin Mediated Inhibition Of Myosin Motor Activity Length = 776

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246

>pdb|1W9J|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Alf4 Length = 770

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|1LVK|A Chain A, X-Ray Crystal Structure Of The Mg (Dot) 2'(3')-O-(N- Methylanthraniloyl) Nucleotide Bound To Dictyostelium Discoideum Myosin Motor Domain Length = 762

Iteration: 1
 Score =  114 bits (286), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|1YV3|A Chain A, The Structural Basis Of Blebbistatin Inhibition And Specificity For Myosin Ii Length = 762

Iteration: 1
 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|1W9I|A Chain A, Myosin Ii Dictyostelium Discoideum Motor Domain S456y Bound With Mgadp-Befx Length = 770

Iteration: 1
 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>pdb|2X9H|A Chain A, Crystal Structure Of Myosin-2 Motor Domain In Complex With Adp-Metavanadate And Pentachlorocarbazole Length = 695

Iteration: 1
 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246

>pdb|2XO8|A Chain A, Crystal Structure Of Myosin-2 In Complex With Tribromodichloropseudilin Length = 776

Iteration: 1
 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246

>pdb|3MKD|A Chain A, Crystal Structure Of Myosin-2 Dictyostelium Discoideum Motor Domain S456y Mutant In Complex With Adp-Orthovanadate Length = 692

Iteration: 1
 Score =  114 bits (285), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/114 (50%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 133 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 192
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 246

>pdb|3MYH|X Chain X, Insights Into The Importance Of Hydrogen Bonding In The Gamma- Phosphate Binding Pocket Of Myosin: Structural And Functional Studies Of Ser236 Length = 762

Iteration: 1
 Score =  113 bits (283), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 83/114 (72%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+N+SRFGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNASRFGKFIEIQF 247

>pdb|1W8J|A Chain A, Crystal Structure Of Myosin V Motor Domain - Nucleotide-Free Length = 766

Iteration: 1
 Score =  113 bits (282), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 52/111 (46%), Positives = 77/111 (69%), Gaps = 2/111 (1%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATS-GNQVVVISGESGSGKTECTKLVM 62
           +YG D++  Y GQ +G + PH+FA+   AY  +A    NQ +++SGESG+GKT   K  M
Sbjct: 118 IYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177
Query: 63  QYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           +Y A V+ S S   + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 178 RYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 228

>pdb|1G8X|A Chain A, Structure Of A Genetically Engineered Molecular Motor Length = 1010

Iteration: 1
 Score =  112 bits (280), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 56/114 (49%), Positives = 82/114 (71%), Gaps = 5/114 (4%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y  +MV  ++G+    ++PH+FAI   AY S L    NQ ++I+GESG+GKTE TK V+
Sbjct: 134 IYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193
Query: 63  QYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSS FGKF+++ F
Sbjct: 194 QYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQF 247

>pdb|1LKX|A Chain A, Motor Domain Of Myoe, A Class-I Myosin Length = 697

Iteration: 1
 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 84/114 (73%), Gaps = 4/114 (3%)
Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
           ++Y    +K Y G+    + PH++A+ + AY ++  S  NQ V+ISGESG+GKTE +K +
Sbjct: 55  NIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKI 114
Query: 62  MQYLAAV--NKSPS-NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           MQ+L  V  N+SP+   I++ +L+++PLLE+FGNAKT+RNDNSSRFGK++++ F
Sbjct: 115 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 168

>pdb|4A7F|C Chain C, Structure Of The Actin-Tropomyosin-Myosin Complex (Rigor Atm 3) Length = 697

Iteration: 1
 Score =  110 bits (276), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 54/114 (47%), Positives = 84/114 (73%), Gaps = 4/114 (3%)
Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
           ++Y    +K Y G+    + PH++A+ + AY ++  S  NQ V+ISGESG+GKTE +K +
Sbjct: 55  NIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKI 114
Query: 62  MQYLAAV--NKSPS-NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           MQ+L  V  N+SP+   I++ +L+++PLLE+FGNAKT+RNDNSSRFGK++++ F
Sbjct: 115 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 168

>pdb|2OS8|A Chain A, Rigor-Like Structures Of Muscle Myosins Reveal Key Mechanical Elements In The Transduction Pathways Of This Allosteric Motor Length = 840

Iteration: 1
 Score =  110 bits (274), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/123 (47%), Positives = 79/123 (64%), Gaps = 15/123 (12%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y   ++ KY G+    + PHLF++   AY  + T   NQ  +I+GESG+GKTE TK V+
Sbjct: 131 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTESTKKVI 190
Query: 63  QYLAAV-------------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQ 109
            Y A V             N   SNL  +QI+EA+P+LE+FGNAKTVRN+NSSRFGKF++
Sbjct: 191 MYFARVAANLYKQKEEPVPNLRASNL-EDQIIEANPVLEAFGNAKTVRNNNSSRFGKFIR 249
Query: 110 VHF 112
           +HF
Sbjct: 250 IHF 252

>pdb|4DB1|A Chain A, Cardiac Human Myosin S1dc, Beta Isoform Complexed With Mn-Amppnp Length = 783

Iteration: 1
 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 79/120 (65%), Gaps = 11/120 (9%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y  ++V  Y G+      PH+F+I   AY  + T   NQ ++I+GESG+GKT  TK V+
Sbjct: 133 VYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVI 192
Query: 63  QYLAAV---------NKSPSN-LITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QY A +         ++SP    + +QI++A+P LE+FGNAKTVRNDNSSRFGKF+++HF
Sbjct: 193 QYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHF 252

>pdb|2EC6|A Chain A, Placopecten Striated Muscle Myosin Ii Length = 838

Iteration: 1
 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/123 (44%), Positives = 79/123 (64%), Gaps = 14/123 (11%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y   ++ KY G+    + PHLF++   AY  + T   NQ  +I+GESG+GKTE TK V+
Sbjct: 131 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190
Query: 63  QYLA----AVNKSPSNL---------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQ 109
            YLA    AV K  S           + +QI++A+P+LE++GNAKT RN+NSSRFGKF++
Sbjct: 191 MYLAKVACAVKKKTSEEEEADQKKGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIR 250
Query: 110 VHF 112
           +HF
Sbjct: 251 IHF 253

>pdb|2YCU|A Chain A, Crystal Structure Of Human Non Muscle Myosin 2c In Pre-power Stroke State Length = 995

Iteration: 1
 Score =  104 bits (260), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 54/118 (45%), Positives = 79/118 (66%), Gaps = 9/118 (7%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y   +V+ Y G+    + PH++A+   AY S L    +Q ++ +GESG+GKTE TK V+
Sbjct: 108 IYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVI 167
Query: 63  QYLAAVNKSPSNL--------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           QYLA V  SP           +  Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF++++F
Sbjct: 168 QYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 225

>pdb|1B7T|A Chain A, Myosin Digested By Papain Length = 835

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 12/121 (9%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y   ++ KY G+    + PHLF++   AY  + T   NQ  +I+GESG+GKTE TK V+
Sbjct: 131 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190
Query: 63  QYLA----AVNKSPSNL-------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
            YLA    AV K            + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++H
Sbjct: 191 MYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 250
Query: 112 F 112
           F
Sbjct: 251 F 251

>pdb|1DFK|A Chain A, Nucleotide-Free Scallop Myosin S1-Near Rigor State Length = 830

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 12/121 (9%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y   ++ KY G+    + PHLF++   AY  + T   NQ  +I+GESG+GKTE TK V+
Sbjct: 126 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 185
Query: 63  QYLA----AVNKSPSNL-------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
            YLA    AV K            + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++H
Sbjct: 186 MYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 245
Query: 112 F 112
           F
Sbjct: 246 F 246

>pdb|1QVI|A Chain A, Crystal Structure Of Scallop Myosin S1 In The Pre-Power Stroke State To 2.6 Angstrom Resolution: Flexibility And Function In The Head Length = 840

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 12/121 (9%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y   ++ KY G+    + PHLF++   AY  + T   NQ  +I+GESG+GKTE TK V+
Sbjct: 131 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190
Query: 63  QYLA----AVNKSPSNL-------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
            YLA    AV K            + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++H
Sbjct: 191 MYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 250
Query: 112 F 112
           F
Sbjct: 251 F 251

>pdb|1KK7|A Chain A, Scallop Myosin In The Near Rigor Conformation Length = 837

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 12/121 (9%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y   ++ KY G+    + PHLF++   AY  + T   NQ  +I+GESG+GKTE TK V+
Sbjct: 131 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190
Query: 63  QYLA----AVNKSPSNL-------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
            YLA    AV K            + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++H
Sbjct: 191 MYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 250
Query: 112 F 112
           F
Sbjct: 251 F 251

>pdb|1DFL|A Chain A, Scallop Myosin S1 Complexed With Mgadp:vanadate-Transition State Length = 831

Iteration: 1
 Score =  104 bits (259), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/121 (44%), Positives = 78/121 (64%), Gaps = 12/121 (9%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y   ++ KY G+    + PHLF++   AY  + T   NQ  +I+GESG+GKTE TK V+
Sbjct: 127 IYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 186
Query: 63  QYLA----AVNKSPSNL-------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
            YLA    AV K            + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++H
Sbjct: 187 MYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIH 246
Query: 112 F 112
           F
Sbjct: 247 F 247

>pdb|1BR1|A Chain A, Smooth Muscle Myosin Motor Domain-Essential Light Chain Complex With Mgadp.Alf4 Bound At The Active Site Length = 820

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y   ++  Y+G+    + PH++AI   AY S L    +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63  QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
           QYLA V  S            PS     + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
           ++++F
Sbjct: 251 IRINF 255

>pdb|1BR2|A Chain A, Smooth Muscle Myosin Motor Domain Complexed With Mgadp.Alf4 Length = 791

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y   ++  Y+G+    + PH++AI   AY S L    +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63  QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
           QYLA V  S            PS     + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
           ++++F
Sbjct: 251 IRINF 255

>pdb|3I5G|A Chain A, Crystal Structure Of Rigor-Like Squid Myosin S1 Length = 839

Iteration: 1
 Score =  102 bits (255), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 77/126 (61%), Gaps = 17/126 (13%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYS-ALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y   +V KY G+    + PHLF+I   AY   L    NQ ++I+GESG+GKTE TK V+
Sbjct: 131 IYTQGLVDKYRGKRRAEMPPHLFSIADNAYQYMLQDRENQSMLITGESGAGKTENTKKVI 190
Query: 63  QYLAAVNKSPSNL----------------ITEQILEASPLLESFGNAKTVRNDNSSRFGK 106
           QY A V  S +                  + +QI++ +P+LE++GNAKT RN+NSSRFGK
Sbjct: 191 QYFALVAASLAGKKDKKEEEKKKDEKKGTLEDQIVQCNPVLEAYGNAKTTRNNNSSRFGK 250
Query: 107 FLQVHF 112
           F+++HF
Sbjct: 251 FIRIHF 256

>pdb|3DTP|B Chain B, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 973

Iteration: 1
 Score =  102 bits (254), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y   ++  Y+G+    + PH++AI   AY S L    +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63  QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
           QYLA V  S            PS     + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
           ++++F
Sbjct: 251 IRINF 255

>pdb|3DTP|A Chain A, Tarantula Heavy Meromyosin Obtained By Flexible Docking To Tarantula Muscle Thick Filament Cryo-Em 3d-Map Length = 971

Iteration: 1
 Score =  102 bits (254), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y   ++  Y+G+    + PH++AI   AY S L    +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63  QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
           QYLA V  S            PS     + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
           ++++F
Sbjct: 251 IRINF 255

>pdb|3J04|A Chain A, Em Structure Of The Heavy Meromyosin Subfragment Of Chick Smooth Muscle Myosin With Regulatory Light Chain In Phosphorylated State Length = 909

Iteration: 1
 Score =  102 bits (253), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y   ++  Y+G+    + PH++AI   AY S L    +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63  QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
           QYLA V  S            PS     + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
           ++++F
Sbjct: 251 IRINF 255

>pdb|1I84|S Chain S, Cryo-Em Structure Of The Heavy Meromyosin Subfragment Of Chicken Gizzard Smooth Muscle Myosin With Regulatory Light Chain In The Dephosphorylated State. Only C Alphas Provided For Regulatory Light Chain. Only Backbone Atoms Provided For S2 Fragment. Length = 1184

Iteration: 1
 Score =  100 bits (250), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 55/125 (44%), Positives = 81/125 (64%), Gaps = 16/125 (12%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAY-SALATSGNQVVVISGESGSGKTECTKLVM 62
           +Y   ++  Y+G+    + PH++AI   AY S L    +Q ++ +GESG+GKTE TK V+
Sbjct: 131 IYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVI 190
Query: 63  QYLAAVNKS------------PS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKF 107
           QYLA V  S            PS     + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF
Sbjct: 191 QYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKF 250
Query: 108 LQVHF 112
           ++++F
Sbjct: 251 IRINF 255

>pdb|2MYS|A Chain A, Myosin Subfragment-1, Alpha Carbon Coordinates Only For The Two Light Chains Length = 843

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 12/121 (9%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y   +V  Y G+      PH+F+I   AY  + T   NQ ++I+GESG+GKT  T  V+
Sbjct: 134 VYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVI 193
Query: 63  QYLAAVNKSPSN-----------LITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
           QY A +  S               + +QI+ A+PLLE+FGNA TVRNDNSSRFG F+++H
Sbjct: 194 QYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIH 253
Query: 112 F 112
           F
Sbjct: 254 F 254

>pdb|1M8Q|A Chain A, Molecular Models Of Averaged Rigor Crossbridges From Tomograms Of Insect Flight Muscle Length = 840

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/121 (42%), Positives = 72/121 (59%), Gaps = 12/121 (9%)
Query: 4   MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLVM 62
           +Y   +V  Y G+      PH+F+I   AY  + T   NQ ++I+GESG+GKT  T  V+
Sbjct: 131 VYNPXVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTXRVI 190
Query: 63  QYLAAVNKSPSN-----------LITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
           QY A +  S               + +QI+ A+PLLE+FGNA TVRNDNSSRFG F+++H
Sbjct: 191 QYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAXTVRNDNSSRFGXFIRIH 250
Query: 112 F 112
           F
Sbjct: 251 F 251

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	4e-57
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	1e-56
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	5e-56
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	6e-56
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	2e-55
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	3e-55
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	8e-55
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	4e-54
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	2e-50
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-46
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	6e-05

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A Length = 795

 Score =  187 bits (477), Expect = 4e-57
 Identities = 52/112 (46%), Positives = 77/112 (68%), Gaps = 2/112 (1%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +YG D++  Y GQ +G + PH+FA+   AY  +A    NQ +++SGESG+GKT   K  
Sbjct: 117 PIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYA 176

Query: 62  MQYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           M+Y A V+ S S   + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 228

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A* Length = 784

 Score =  185 bits (472), Expect = 1e-56
 Identities = 55/113 (48%), Positives = 83/113 (73%), Gaps = 2/113 (1%)

Query: 1   MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTK 59
           +  +Y  + +K Y+G+ LGT+ PH+FAI   A+  +     +Q +++SGESG+GKTE TK
Sbjct: 99  IPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTK 158

Query: 60  LVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
            V++YL     +  + I ++I+EA+PLLE+FGNAKTVRN+NSSRFGKF+++HF
Sbjct: 159 FVLRYLTESYGTGQD-IDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHF 210

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A* Length = 995

 Score =  185 bits (471), Expect = 5e-56
 Identities = 52/119 (43%), Positives = 79/119 (66%), Gaps = 9/119 (7%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y   +V+ Y G+    + PH++A+   AY ++     +Q ++ +GESG+GKTE TK V
Sbjct: 107 PIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKV 166

Query: 62  MQYLAAVNKSPSNL--------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           +QYLA V  SP           +  Q+L+A+P+LE+FGNAKTV+NDNSSRFGKF++++F
Sbjct: 167 IQYLAHVASSPKGRKEPGVPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINF 225

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9 Length = 697

 Score =  183 bits (466), Expect = 6e-56
 Identities = 52/114 (45%), Positives = 82/114 (71%), Gaps = 4/114 (3%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
           ++Y    +K Y G+    + PH++A+ + AY ++  S  NQ V+ISGESG+GKTE +K +
Sbjct: 55  NIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKI 114

Query: 62  MQYLAAVNKSPS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           MQ+L  V+ + S     I++ +L+++PLLE+FGNAKT+RNDNSSRFGK++++ F
Sbjct: 115 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 168

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score =  183 bits (466), Expect = 2e-55
 Identities = 54/115 (46%), Positives = 82/115 (71%), Gaps = 5/115 (4%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y  +MV  ++G+    ++PH+FAI   AY ++     NQ ++I+GESG+GKTE TK V
Sbjct: 133 PIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKV 192

Query: 62  MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           +QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSS FGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQF 247

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ... Length = 770

 Score =  182 bits (463), Expect = 3e-55
 Identities = 55/115 (47%), Positives = 83/115 (72%), Gaps = 5/115 (4%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y  +MV  ++G+    ++PH+FAI   AY ++     NQ ++I+GESG+GKTE TK V
Sbjct: 133 PIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKV 192

Query: 62  MQYLAAV----NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           +QYLA+V      + S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F
Sbjct: 193 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQF 247

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ... Length = 837

 Score =  181 bits (461), Expect = 8e-55
 Identities = 52/122 (42%), Positives = 77/122 (63%), Gaps = 12/122 (9%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y   ++ KY G+    + PHLF++   AY  + T   NQ  +I+GESG+GKTE TK V
Sbjct: 130 PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKV 189

Query: 62  MQYLAAV-----------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 110
           + YLA V           +      + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++
Sbjct: 190 IMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRI 249

Query: 111 HF 112
           HF
Sbjct: 250 HF 251

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A* Length = 783

 Score =  179 bits (455), Expect = 4e-54
 Identities = 53/121 (43%), Positives = 75/121 (61%), Gaps = 11/121 (9%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y  ++V  Y G+      PH+F+I   AY  + T   NQ ++I+GESG+GKT  TK V
Sbjct: 132 PVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRV 191

Query: 62  MQYLAAV----------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVH 111
           +QY A +                 + +QI++A+P LE+FGNAKTVRNDNSSRFGKF+++H
Sbjct: 192 IQYFAVIAAIGDRSKKDQSPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIH 251

Query: 112 F 112
           F
Sbjct: 252 F 252

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score =  169 bits (431), Expect = 2e-50
 Identities = 52/112 (46%), Positives = 77/112 (68%), Gaps = 2/112 (1%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +YG D++  Y GQ +G + PH+FA+   AY  +A    NQ +++SGESG+GKT   K  
Sbjct: 117 PIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYA 176

Query: 62  MQYLAAVNKSPSNL-ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           M+Y A V+ S S   + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 177 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 228

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score =  158 bits (402), Expect = 1e-46
 Identities = 50/126 (39%), Positives = 78/126 (61%), Gaps = 16/126 (12%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y   ++  Y+G+    + PH++AI   AY ++     +Q ++ +GESG+GKTE TK V
Sbjct: 130 PIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKV 189

Query: 62  MQYLAAV---------------NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGK 106
           +QYLA V                      + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGK
Sbjct: 190 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGK 249

Query: 107 FLQVHF 112
           F++++F
Sbjct: 250 FIRINF 255

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235

 Score = 39.2 bits (92), Expect = 6e-05
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 3/25 (12%)

Query: 41 NQVVVISGESGSGKTECTKLVMQYL 65
          N VV+I G +G GKT  T++  Q++
Sbjct: 76 NSVVIIRGATGCGKT--TQVP-QFI 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	100.0
4db1_A	783	Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb	100.0
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	100.0
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	100.0
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	100.0
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	100.0
4anj_A	1052	Unconventional myosin-VI, green fluorescent prote;	100.0
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	100.0
2ycu_A	995	Non muscle myosin 2C, alpha-actinin; motor protein	100.0
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	100.0
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	100.0
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	98.65
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	98.64
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	98.6
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	98.6
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	98.58
1g6h_A	257	High-affinity branched-chain amino acid transport	98.58
1b0u_A	262	Histidine permease; ABC transporter, transport pro	98.57
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	98.57
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	98.56
1ji0_A	240	ABC transporter; ATP binding protein, structural g	98.56
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	98.55
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	98.55
1sgw_A	214	Putative ABC transporter; structural genomics, P p	98.54
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	98.54
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	98.54
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	98.54
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	98.53
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	98.53
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	98.52
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	98.51
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	98.5
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	98.49
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	98.49
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	98.48
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	98.48
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	98.48
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	98.47
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	98.47
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	98.46
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	98.46
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	98.46
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	98.45
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	98.44
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	98.43
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	98.43
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	98.42
2eyu_A	261	Twitching motility protein PILT; pilus retraction	98.41
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	98.41
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	98.4
2ghi_A	260	Transport protein; multidrug resistance protein, M	98.39
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	98.38
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	98.37
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	98.37
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	98.33
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	98.32
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.31
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	98.3
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	98.28
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	98.27
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.27
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	98.26
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	98.26
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	98.25
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	98.25
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	98.24
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.23
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	98.23
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	98.22
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	98.22
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	98.22
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	98.21
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	98.21
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.21
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	98.21
2og2_A	359	Putative signal recognition particle receptor; nuc	98.21
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	98.21
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	98.19
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	98.19
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	98.19
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	98.18
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	98.17
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	98.16
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	98.15
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	98.14
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	98.14
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	98.14
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	98.13
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	98.13
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.12
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	98.12
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	98.12
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	98.11
2ewv_A	372	Twitching motility protein PILT; pilus retraction	98.11
4a74_A	231	DNA repair and recombination protein RADA; hydrola	98.1
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	98.1
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	98.09
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	98.08
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	98.08
1p9r_A	418	General secretion pathway protein E; bacterial typ	98.08
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	98.07
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.05
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	98.02
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	98.01
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	98.01
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	97.99
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	97.99
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	97.97
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	97.95
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	97.95
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	97.95
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	97.93
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.93
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.91
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	97.9
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	97.9
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.9
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	97.89
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	97.88
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.87
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.87
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	97.85
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.82
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	97.81
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	97.81
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	97.8
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	97.8
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	97.8
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.79
3kta_A	182	Chromosome segregation protein SMC; structural mai	97.78
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.76
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.74
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.74
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.74
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.73
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	97.7
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.68
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.68
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	97.67
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	97.65
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	97.65
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	97.64
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	97.64
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	97.64
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	97.63
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	97.63
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.61
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	97.6
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	97.59
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	97.59
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	97.58
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	97.58
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.55
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	97.55
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	97.54
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	97.54
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.53
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	97.51
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	97.5
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	97.48
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	97.48
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.48
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	97.47
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	97.47
2cvh_A	220	DNA repair and recombination protein RADB; filamen	97.45
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	97.45
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	97.42
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	97.41
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	97.41
4aby_A	415	DNA repair protein RECN; hydrolase, double strand	97.41
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	97.4
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	97.4
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	97.39
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	97.39
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	97.39
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	97.38
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	97.37
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	97.37
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.35
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	97.34
1ewq_A	765	DNA mismatch repair protein MUTS; multiple domains	97.33
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	97.33
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	97.32
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	97.32
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	97.31
1wb9_A	800	DNA mismatch repair protein MUTS; DNA-binding, ATP	97.31
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	97.29
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	97.28
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	97.28
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.28
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	97.28
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	97.28
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	97.27
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	97.27
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	97.27
1via_A	175	Shikimate kinase; structural genomics, transferase	97.27
3thx_B	918	DNA mismatch repair protein MSH3; ABC family ATPas	97.27
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	97.26
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	97.24
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	97.23
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	97.23
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	97.22
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	97.22
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	97.2
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	97.2
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	97.2
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	97.18
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	97.18
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	97.17
1w1w_A	430	Structural maintenance of chromosome 1; cohesin, c	97.17
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.17
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	97.17
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	97.16
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	97.16
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	97.15
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	97.15
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	97.15
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	97.15
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	97.15
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	97.14
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	97.13
2vli_A	183	Antibiotic resistance protein; transferase, tunica	97.13
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	97.12
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	97.12
3thx_A	934	DNA mismatch repair protein MSH2; ABC family ATPas	97.11
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	97.11
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	97.1
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	97.1
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	97.09
2o8b_B	1022	DNA mismatch repair protein MSH6; DNA damage respo	97.09
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	97.08
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	97.08
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	97.06
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	97.05
2o5v_A	359	DNA replication and repair protein RECF; ABC ATPas	97.05
3bos_A	242	Putative DNA replication factor; P-loop containing	97.04
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	97.04
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	97.04
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	97.02
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	97.01
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	97.01
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	97.01
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	97.0
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	97.0
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	96.98
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	96.96
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	96.96
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	96.95
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	96.91
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	96.9
1e69_A	322	Chromosome segregation SMC protein; structural mai	96.9
2wji_A	165	Ferrous iron transport protein B homolog; membrane	96.89
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	96.88
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	96.88
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.87
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.87
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.87
2vf7_A	842	UVRA2, excinuclease ABC, subunit A.; DNA-binding p	96.87
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.87
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.86
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	96.85
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.85
2ygr_A	993	Uvrabc system protein A; hydrolase, nucleotide exc	96.84
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	96.82
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.81
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	96.8
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	96.8
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	96.79
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	96.79
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	96.79
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.77
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.77
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	96.77
2gks_A	546	Bifunctional SAT/APS kinase; transferase, sulfuryl	96.75
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	96.75
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	96.74
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.74
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	96.73
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	96.72
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.7
2r6f_A	972	Excinuclease ABC subunit A; UVRA, nucleotide excis	96.69
4edh_A	213	DTMP kinase, thymidylate kinase; structural genomi	96.68
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	96.66
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	96.66
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.64
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.64
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	96.64
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	96.64
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	96.63
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	96.62
3lv8_A	236	DTMP kinase, thymidylate kinase; structural genomi	96.6
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.6
2dhr_A	499	FTSH; AAA+ protein, hexameric Zn metalloprotease,	96.6
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	96.59
3ld9_A	223	DTMP kinase, thymidylate kinase; ssgcid, NIH, niai	96.59
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	96.59
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	96.59
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	96.58
3v9p_A	227	DTMP kinase, thymidylate kinase; ssgcid, STRU geno	96.58
4tmk_A	213	Protein (thymidylate kinase); ATP:DTMP phosphotran	96.57
3qkt_A	339	DNA double-strand break repair RAD50 ATPase; RECA-	96.56
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	96.54
4ag6_A	392	VIRB4 ATPase, type IV secretory pathway VIRB4 comp	96.54
2ocp_A	241	DGK, deoxyguanosine kinase; protein-nucleotide com	96.53
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	96.53
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	96.53
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	96.52
3pih_A	916	Uvrabc system protein A; hydrolase, ABC ATPase, DN	96.52
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.52
2ged_A	193	SR-beta, signal recognition particle receptor beta	96.51
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	96.5
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	96.48
3tmk_A	216	Thymidylate kinase; phosphotransferase; HET: T5A;	96.47
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.47
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	96.47
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	96.47
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	96.46
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	96.45
1m8p_A	573	Sulfate adenylyltransferase; rossmann fold, phosph	96.45
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	96.45
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	96.45
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	96.45
2zr9_A	349	Protein RECA, recombinase A; recombination, RECA m	96.45
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	96.44
3ice_A	422	Transcription termination factor RHO; transcriptio	96.44
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	96.44
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	96.43
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	96.43
2ce7_A	476	Cell division protein FTSH; metalloprotease; HET:	96.42
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	96.42
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	96.41
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	96.41
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.4
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	96.39
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.39
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	96.39
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	96.39
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	96.37
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	96.36
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	96.36
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	96.35
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	96.35
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	96.34
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	96.33
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	96.32
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	96.32
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.3
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	96.3
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.3
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	96.29
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.29
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	96.28
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	96.28
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	96.28
2r6a_A	454	DNAB helicase, replicative helicase; replication,	96.28
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	96.28
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	96.27
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	96.27
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	96.27
3pvs_A	447	Replication-associated recombination protein A; ma	96.27
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	96.26
2qgz_A	308	Helicase loader, putative primosome component; str	96.25
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	96.25
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	96.25
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	96.24
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	96.24
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	96.23
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	96.22
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	96.22
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.22
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	96.22
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	96.21
1nrj_B	218	SR-beta, signal recognition particle receptor beta	96.2
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	96.2
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	96.2
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	96.19
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	96.19
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	96.18
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	96.18
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	96.17
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	96.17
3auy_A	371	DNA double-strand break repair RAD50 ATPase; DNA r	96.17
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	96.16
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	96.16
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	96.16
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	96.16
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	96.15
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	96.14
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	96.13
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	96.13
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	96.12
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	96.12
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	96.12
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	96.12
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	96.11
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	96.11
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	96.11
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	96.1
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.08
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	96.07
4hlc_A	205	DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri	96.07
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	96.07
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	96.06
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	96.05
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	96.04
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	96.04
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.02
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	96.02
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	96.02
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	96.01
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	96.01
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	96.01
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	96.01
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	96.0
3upu_A	459	ATP-dependent DNA helicase DDA; RECA-like domain,	96.0
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	96.0
3co5_A	143	Putative two-component system transcriptional RES	96.0
2hf9_A	226	Probable hydrogenase nickel incorporation protein	96.0
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	95.99
3hu3_A	489	Transitional endoplasmic reticulum ATPase; VCP, tr	95.99
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	95.98
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	95.97
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	95.96
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	95.96
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	95.95
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	95.93
1g8f_A	511	Sulfate adenylyltransferase; alpha-beta protein, b	95.91
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.91
1v5w_A	343	DMC1, meiotic recombination protein DMC1/LIM15 hom	95.9
2fh5_B	214	SR-beta, signal recognition particle receptor beta	95.9
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	95.9
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	95.9
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	95.9
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	95.9
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	95.88
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	95.88
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	95.88
2orw_A	184	Thymidine kinase; TMTK, TP4A, transferase; HET: 4T	95.87
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.87
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	95.85
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	95.84
1x6v_B	630	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.83
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.83
2axn_A	520	6-phosphofructo-2-kinase/fructose-2,6- biphosphata	95.81
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	95.8
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	95.79
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	95.79
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	95.79
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	95.79
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	95.78
3fdi_A	201	Uncharacterized protein; cytidylate kinase like pr	95.77
3llu_A	196	RAS-related GTP-binding protein C; structural geno	95.77
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.76
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.76
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	95.75
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.74
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	95.74
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	95.74
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	95.73
2z43_A	324	DNA repair and recombination protein RADA; archaea	95.71
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	95.7
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	95.7
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	95.69
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.69
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	95.69
1ypw_A	806	Transitional endoplasmic reticulum ATPase; AAA, P9	95.68
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	95.68
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	95.67
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	95.66
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	95.66
4ad8_A	517	DNA repair protein RECN; DNA binding protein, ATPa	95.66
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	95.65
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	95.65
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	95.62
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	95.62
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	95.62
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	95.61
2r44_A	331	Uncharacterized protein; putative ATPase, structur	95.6
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	95.6
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	95.6
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	95.6
3u61_B	324	DNA polymerase accessory protein 44; AAA+, ATP hyd	95.59
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	95.59
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.58
3hjn_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	95.57
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	95.57
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	95.56
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	95.53
1r6b_X	758	CLPA protein; AAA+, N-terminal domain, CLPS, cryst	95.51
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.51
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	95.51
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	95.5
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	95.5
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.49
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	95.49
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	95.49
2fna_A	357	Conserved hypothetical protein; structural genomic	95.48
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	95.48
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	95.48
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	95.46

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=100.00  E-value=1.5e-37  Score=240.70  Aligned_cols=114  Identities=45%  Similarity=0.803  Sum_probs=105.8

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc---hhH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS---NLI   76 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~---~~~   76 (114)
                      +||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++...   ..+
T Consensus        53 ~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~i  132 (697)
T 1lkx_A           53 NLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERI  132 (697)
T ss_dssp             CCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             CCCCCCHHHHHHHhCCCCCCCCchHHHHHHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHhhcCCCCCccccH
Confidence            5899999999999999999999999999999999987 477999999999999999999999999999877222   357


Q ss_pred             HHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          77 TEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        77 ~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       133 ~~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~  170 (697)
T 1lkx_A          133 SKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNA  170 (697)
T ss_dssp             HHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEECT
T ss_pred             HHHHHhcchHHHHhcCcccCCCCCcchhheeEEEEECC
Confidence            88999999999999999999999999999999999973

>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*

Probab=100.00  E-value=9.8e-38  Score=243.89  Aligned_cols=114  Identities=46%  Similarity=0.763  Sum_probs=105.3

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-------
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP-------   72 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~-------   72 (114)
                      +||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..|.+++++...++..       
T Consensus       130 ~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im~yla~v~~~~~~~~~~~  209 (783)
T 4db1_A          130 WLPVYTPEVVAAYRGKKRSEAPPHIFSISDNAYQYMLTDRENQSILITGESGAGKTVNTKRVIQYFAVIAAIGDRSKKDQ  209 (783)
T ss_dssp             CCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHSBCCCC-----
T ss_pred             cCCCCCHHHHHHhcCCCcCCCCchhhHHHHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHHHhhhhhccCCCcccccc
Confidence            5899999999999999999999999999999999987 47799999999999999999999999998875432       


Q ss_pred             ---chhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          73 ---SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        73 ---~~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                         ...++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       210 ~~~~~~ve~~il~snpiLEAFGNAkT~rNdNSSRFGK~i~i~F~~  254 (783)
T 4db1_A          210 SPGKGTLEDQIIQANPALEAFGNAKTVRNDNSSRFGKFIRIHFGA  254 (783)
T ss_dssp             --CCSCHHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECT
T ss_pred             ccccccHHHHHHHhHHHHHhccCcccCCCCCCCccceeEEEEECC
Confidence               135889999999999999999999999999999999999973

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=100.00  E-value=1.2e-37  Score=243.94  Aligned_cols=114  Identities=46%  Similarity=0.841  Sum_probs=106.7

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc-hhHHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS-NLITE   78 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~-~~~~~   78 (114)
                      +||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++... ..+++
T Consensus       115 ~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~ie~  194 (795)
T 1w7j_A          115 QLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEE  194 (795)
T ss_dssp             CCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCSSSSCHHH
T ss_pred             ccCcCCHHHHHHHcCCCccCCCccHhHHHHHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHhhcCCCCccchHH
Confidence            5899999999999999999999999999999999987 477999999999999999999999999998876543 47899


Q ss_pred             HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       195 ~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~  230 (795)
T 1w7j_A          195 KVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDK  230 (795)
T ss_dssp             HHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECT
T ss_pred             HHHHHHHHHHHhcCccCCCCCCccccceEEEEEECC
Confidence            999999999999999999999999999999999973

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=100.00  E-value=1.2e-37  Score=242.85  Aligned_cols=114  Identities=47%  Similarity=0.810  Sum_probs=105.6

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc----hh
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS----NL   75 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~----~~   75 (114)
                      +||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++...    ..
T Consensus       131 ~l~iY~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~  210 (770)
T 1w9i_A          131 RIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGV  210 (770)
T ss_dssp             CCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC------CH
T ss_pred             cccCCCHHHHHHhcCCCcCCCCccHHHHHHHHHHHHHhhcCCcEEEEecCCCCcchHHHHHHHHHHHHhccccCCcccCc
Confidence            5899999999999999999999999999999999987 477999999999999999999999999998765432    46


Q ss_pred             HHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          76 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        76 ~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      ++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       211 ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~  249 (770)
T 1w9i_A          211 LEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNS  249 (770)
T ss_dssp             HHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECT
T ss_pred             HHHHHHHHHHHHHHhCCCcCCCCCCcCCcceEEEEEECC
Confidence            889999999999999999999999999999999999973

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=100.00  E-value=1.4e-37  Score=244.57  Aligned_cols=114  Identities=45%  Similarity=0.764  Sum_probs=105.7

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc------
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS------   73 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~------   73 (114)
                      +||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++...      
T Consensus       128 ~l~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~~~~~~  207 (837)
T 1kk8_A          128 RLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEA  207 (837)
T ss_dssp             CCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC----
T ss_pred             CCCCCCHHHHHHhcCCCcCCCCCcHHHHHHHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHHHHHHHhcccCCcccccc
Confidence            5899999999999999999999999999999999987 477999999999999999999999999998765431      


Q ss_pred             -----hhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          74 -----NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        74 -----~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                           ..++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       208 ~~~~~~~ie~~il~snpiLEAFGNAkT~rNdNSSRFGKfi~i~F~~  253 (837)
T 1kk8_A          208 SDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGP  253 (837)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECT
T ss_pred             cccccccHHHHHHHHHHHHHHhcCccCCCCCCCCCceeEEEEEECC
Confidence                 45789999999999999999999999999999999999973

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=100.00  E-value=2.7e-37  Score=241.83  Aligned_cols=113  Identities=50%  Similarity=0.859  Sum_probs=101.5

Q ss_pred             CC-CCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHH
Q psy7658           1 MY-DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITE   78 (114)
Q Consensus         1 ~l-~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~   78 (114)
                      +| |+|+++++..|+++.+.++|||||++++.||++|.. .++|+|+|+||||||||+..+.+++++....|.. ..+++
T Consensus        98 ~l~~iY~~~~~~~Y~g~~~~~~pPHifaiA~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~~yla~~~~~~-~~ie~  176 (784)
T 2v26_A           98 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTG-QDIDD  176 (784)
T ss_dssp             CCTTTTSHHHHHHHTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC-------C
T ss_pred             CcCCCCCHHHHHHHhCCCcccCCchHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHHHHHHhhcCCC-CcHHH
Confidence            47 699999999999999999999999999999999874 7799999999999999999999999999876543 36788


Q ss_pred             HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       177 ~il~snpiLEAFGNAKT~rNdNSSRFGKfi~i~F~~  212 (784)
T 2v26_A          177 RIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE  212 (784)
T ss_dssp             HHHHTHHHHHHHHEECCSSCTTEECSEEEEEEEECT
T ss_pred             HHHHHHHHHHHhCCCcCCCCCCcchhheEEEEEEec
Confidence            999999999999999999999999999999999973

>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}

Probab=100.00  E-value=3.5e-37  Score=246.26  Aligned_cols=113  Identities=50%  Similarity=0.851  Sum_probs=103.9

Q ss_pred             CCC-CCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCchhHHH
Q psy7658           1 MYD-MYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSNLITE   78 (114)
Q Consensus         1 ~l~-iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~~~~~   78 (114)
                      +|| ||+++++..|+++.+.++|||||++++.||++|. ...+|+|+|+||||||||+..+.+++++...++.. ..+++
T Consensus       102 ~lp~iY~~~~~~~Y~g~~~~~lpPHIfaiA~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~yLa~~~~~~-~~ie~  180 (1052)
T 4anj_A          102 DIPKIYSSETIKSYQGKSLGTMPPHVFAIADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLRYLTESYGTG-QDIDD  180 (1052)
T ss_dssp             CCTTTTSHHHHHHHTTCCBTTBCSCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCC----CTT
T ss_pred             CccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHHHHHHhcCCC-ccHHH
Confidence            476 9999999999999999999999999999999987 47799999999999999999999999999876654 34788


Q ss_pred             HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       181 ~Il~snpiLEAFGNAKT~rNdNSSRFGK~iel~F~~  216 (1052)
T 4anj_A          181 RIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIHFNE  216 (1052)
T ss_dssp             HHHHTHHHHHHHHEECCSSCTTEESSEEEEEEEECT
T ss_pred             HHHHHHHHHHhccCCCCCCCCCcCCceeEEEEEECC
Confidence            999999999999999999999999999999999973

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=100.00  E-value=7.4e-37  Score=244.32  Aligned_cols=114  Identities=46%  Similarity=0.800  Sum_probs=106.2

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc----hh
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS----NL   75 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~----~~   75 (114)
                      +||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++...    ..
T Consensus       131 ~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~  210 (1010)
T 1g8x_A          131 RIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGV  210 (1010)
T ss_dssp             CCSCCSHHHHHHHTTCCTTTSCCCHHHHHHHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHHHHHHHHHCCCCTTTSSH
T ss_pred             cccCCCHHHHHHhcCCCccCCCccHHHHHHHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHHHHHHHhcccCCCcccch
Confidence            5899999999999999999999999999999999987 477999999999999999999999999998765432    47


Q ss_pred             HHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          76 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        76 ~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      ++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       211 ie~~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~  249 (1010)
T 1g8x_A          211 LEQQILQANPILEAFGNAKTTRNNNSSEFGKFIEIQFNN  249 (1010)
T ss_dssp             HHHHHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECT
T ss_pred             HHHHHHHHHHHHHHhCCCcCCCCCCccccceEEEEEECC
Confidence            889999999999999999999999999999999999973

>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*

Probab=100.00  E-value=4.5e-37  Score=245.52  Aligned_cols=114  Identities=46%  Similarity=0.782  Sum_probs=105.1

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc------
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS------   73 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~------   73 (114)
                      +||+|+++++..|+++.+.++|||||++++.||++|. ..++|+|+|+||||||||+..+.+++++...++...      
T Consensus       105 ~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~~~~  184 (995)
T 2ycu_A          105 QLPIYTEAIVEMYRGKKRHEVPPHVYAVTEGAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAHVASSPKGRKEPG  184 (995)
T ss_dssp             CCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHHHHHHHHSCCSSSCSSSC
T ss_pred             ccCCCCHHHHHHhcCCccCCCCchHHHHhHHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHHHHHHHhcccCCcccccc
Confidence            5899999999999999999999999999999999987 477999999999999999999999999998865432      


Q ss_pred             --hhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          74 --NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        74 --~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                        ..++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       185 ~~~~ie~~il~~npiLEAFGNAkT~rN~NSSRFGK~i~i~F~~  227 (995)
T 2ycu_A          185 VPGELERQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDV  227 (995)
T ss_dssp             CCC-CCSTTTSHHHHHHHHHEECCSSCTTEESSEEEEEEEECT
T ss_pred             ccccHHHHHHHHHHHHHHhcCccCCCCCCCCccceEEEEEECC
Confidence              45788999999999999999999999999999999999973

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=100.00  E-value=8.2e-37  Score=245.47  Aligned_cols=114  Identities=46%  Similarity=0.841  Sum_probs=106.5

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc-hhHHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS-NLITE   78 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~-~~~~~   78 (114)
                      +||+|+++++..|++..+.++|||||++++.||++|. ...+|+|+|+|+||||||+..+.+++++...++... ..+++
T Consensus       115 ~l~iy~~~~~~~Y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~~yla~~~~~~~~~~ie~  194 (1080)
T 2dfs_A          115 QLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEE  194 (1080)
T ss_dssp             CCSCSSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHTTTCCTTTCTHH
T ss_pred             ccccCCHHHHHHhcCCCCCCCCCcHHHHHHHHHHHHHhcCCCcEEEEcCCCCCCccchHHHHHHHHHhhccCCCccchHH
Confidence            5899999999999999999999999999999999987 477999999999999999999999999998876543 46889


Q ss_pred             HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      +|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       195 ~il~snpiLEAFGNAkT~rN~NSSRFGK~i~i~F~~  230 (1080)
T 2dfs_A          195 KVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDK  230 (1080)
T ss_dssp             HHHHHHHHHHHHHEEEETTEEEEECSEEEEEEEECT
T ss_pred             HHHHHHHHHHHhcCCcCCCCCCccccceeEEEEECC
Confidence            999999999999999999999999999999999973

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=100.00  E-value=1.3e-36  Score=246.55  Aligned_cols=113  Identities=45%  Similarity=0.789  Sum_probs=105.6

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-------
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP-------   72 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~-------   72 (114)
                      +||+|+++++..|+++.+.++|||||++++.||++|. ...+|+|+|+|+||||||+..+.+++++...++..       
T Consensus       128 ~l~~y~~~~~~~y~~~~~~~~~PHi~aia~~ay~~m~~~~~~Q~i~isGeSGaGKTe~~k~~~~yla~~~~~~~~~~~~~  207 (1184)
T 1i84_S          128 QLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTS  207 (1184)
T ss_dssp             CCSCCSHHHHHHHSSCCSSSSCCCHHHHHHHHHHHHHHHTCCEEEECCCSTTSSTTHHHHHHHHHHHHHSSCCSCC----
T ss_pred             CCCCCCHHHHHHhcCcccccCCccHhhhHHHHHHHHHhcCCCcEEEEecCCCCCccHHHHHHHHHHHHHhcCCCcccccc
Confidence            5899999999999999999999999999999999987 47799999999999999999999999999886542       


Q ss_pred             --------chhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEec
Q psy7658          73 --------SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFK  113 (114)
Q Consensus        73 --------~~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~  113 (114)
                              ...++++|.+++|||||||||||.+|+||||||||++|+|+
T Consensus       208 ~~~~~~~~~~~~~~~il~~npileaFGnAkT~rN~NSSRfgk~~~i~f~  256 (1184)
T 1i84_S          208 ITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFD  256 (1184)
T ss_dssp             --CTTCCCCCSHHHHHHHHHHHHTTTTEEEETTEEEEECSCEEEEEEEC
T ss_pred             cccccccccchHHHHHHHHHHHHHHhcCCcCCCCccccccceeEEEEEC
Confidence                    24678999999999999999999999999999999999997

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=98.65  E-value=2.4e-08  Score=64.79  Aligned_cols=36  Identities=28%  Similarity=0.369  Sum_probs=31.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|++||||||+++.+++.+ +..|..
T Consensus        28 l~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V   63 (158)
T 1htw_A           28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNV   63 (158)
T ss_dssp             HCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCC
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeE
Confidence            445789999999999999999999999999 766654

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=98.64  E-value=6.3e-09  Score=71.44  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|||||||||+++++++++.+..|..
T Consensus        26 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I   62 (235)
T 3tif_A           26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV   62 (235)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEE
Confidence            5578899999999999999999999999998887654

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=98.60  E-value=1.3e-08  Score=71.11  Aligned_cols=37  Identities=27%  Similarity=0.477  Sum_probs=33.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|||||||||+++++++++.+..|..
T Consensus        32 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I   68 (266)
T 4g1u_C           32 LHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGEC   68 (266)
T ss_dssp             EEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEE
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEE
Confidence            4578899999999999999999999999998887754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=98.60  E-value=9.4e-09  Score=70.07  Aligned_cols=37  Identities=27%  Similarity=0.282  Sum_probs=32.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+|||||||+++++++++.+..|..
T Consensus        25 l~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i   61 (224)
T 2pcj_A           25 LSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV   61 (224)
T ss_dssp             EEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            4578899999999999999999999999998876643

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=98.58  E-value=1.6e-08  Score=69.66  Aligned_cols=37  Identities=19%  Similarity=0.394  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus        23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i   59 (243)
T 1mv5_A           23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI   59 (243)
T ss_dssp             EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            5578899999999999999999999999998887754

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=98.58  E-value=1.3e-08  Score=70.72  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+|||||||+++++++++.+.+|..
T Consensus        28 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i   64 (257)
T 1g6h_A           28 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV   64 (257)
T ss_dssp             CEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            4578899999999999999999999999998876643

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=98.57  E-value=1.3e-08  Score=70.96  Aligned_cols=37  Identities=24%  Similarity=0.312  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus        27 l~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i   63 (262)
T 1b0u_A           27 LQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI   63 (262)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            4578899999999999999999999999998876643

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=98.57  E-value=1.3e-08  Score=71.57  Aligned_cols=37  Identities=19%  Similarity=0.208  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|||||||||+++++++++.+..|..
T Consensus        29 l~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I   65 (275)
T 3gfo_A           29 MNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI   65 (275)
T ss_dssp             EEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEE
Confidence            4578899999999999999999999999998876643

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=98.56  E-value=1.5e-08  Score=70.76  Aligned_cols=37  Identities=24%  Similarity=0.249  Sum_probs=32.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|+|||||||+++++++++.+..|..
T Consensus        45 l~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I   81 (263)
T 2olj_A           45 VHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI   81 (263)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Confidence            4467899999999999999999999999998776643

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.56  E-value=1.5e-08  Score=69.71  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus        27 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i   63 (240)
T 1ji0_A           27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI   63 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence            4578899999999999999999999999998876643

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=98.55  E-value=1.5e-08  Score=70.00  Aligned_cols=37  Identities=35%  Similarity=0.512  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus        30 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I   66 (247)
T 2ff7_A           30 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV   66 (247)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEE
Confidence            5578999999999999999999999999998876643

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=98.55  E-value=1.5e-08  Score=69.59  Aligned_cols=36  Identities=17%  Similarity=0.354  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus        26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   61 (237)
T 2cbz_A           26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH   61 (237)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEE
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence            557889999999999999999999999999877664

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=98.54  E-value=1.5e-08  Score=68.86  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+|||||||+++++++++.+..|..
T Consensus        30 l~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I   66 (214)
T 1sgw_A           30 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI   66 (214)
T ss_dssp             EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEE
Confidence            4578899999999999999999999999998776643

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=98.54  E-value=2.1e-08  Score=72.90  Aligned_cols=37  Identities=22%  Similarity=0.318  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.++++++|+|||||||||+++++++++.+.+|..
T Consensus        25 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I   61 (359)
T 3fvq_A           25 LSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI   61 (359)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEE
Confidence            4578899999999999999999999999998876643

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=98.54  E-value=1.8e-08  Score=70.05  Aligned_cols=37  Identities=14%  Similarity=0.308  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+.+|..
T Consensus        36 l~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I   72 (256)
T 1vpl_A           36 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV   72 (256)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            4578899999999999999999999999998776643

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=98.54  E-value=1.8e-08  Score=68.89  Aligned_cols=36  Identities=22%  Similarity=0.420  Sum_probs=32.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus        29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~   64 (229)
T 2pze_A           29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK   64 (229)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccE
Confidence            557889999999999999999999999999877654

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=98.53  E-value=2e-08  Score=70.68  Aligned_cols=36  Identities=19%  Similarity=0.310  Sum_probs=32.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus        42 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~   77 (279)
T 2ihy_A           42 WQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGT   77 (279)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeE
Confidence            446789999999999999999999999999887654

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=98.53  E-value=2.1e-08  Score=70.21  Aligned_cols=37  Identities=19%  Similarity=0.320  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|+|||||||+++++++++.+..|..
T Consensus        40 l~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I   76 (271)
T 2ixe_A           40 FTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKV   76 (271)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence            4578899999999999999999999999998877654

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=98.52  E-value=2.8e-08  Score=72.78  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|||||||||+++++++++.+..|..
T Consensus        24 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I   60 (381)
T 3rlf_A           24 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL   60 (381)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEE
Confidence            4578899999999999999999999999998877643

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=98.51  E-value=2.4e-08  Score=69.72  Aligned_cols=37  Identities=19%  Similarity=0.427  Sum_probs=33.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|..
T Consensus        28 l~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I   64 (266)
T 2yz2_A           28 LVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDV   64 (266)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEE
Confidence            5578899999999999999999999999998876654

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=98.50  E-value=2.6e-08  Score=69.10  Aligned_cols=36  Identities=14%  Similarity=0.370  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus        26 l~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~   61 (253)
T 2nq2_C           26 FDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK   61 (253)
T ss_dssp             EEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEE
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence            457889999999999999999999999999877664

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=98.49  E-value=3.5e-08  Score=71.71  Aligned_cols=37  Identities=19%  Similarity=0.284  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|||||||||+++++++++.+.+|..
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   60 (359)
T 2yyz_A           24 FEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEI   60 (359)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEE
Confidence            4578899999999999999999999999998876643

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=98.49  E-value=3.5e-08  Score=71.63  Aligned_cols=36  Identities=25%  Similarity=0.342  Sum_probs=32.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.++++++|+|||||||||+++++++++.+..|.
T Consensus        36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~   71 (355)
T 1z47_A           36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGD   71 (355)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence            457889999999999999999999999999877664

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=98.48  E-value=3.9e-08  Score=67.75  Aligned_cols=35  Identities=17%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+ ++++|+|+|||||||+++++++++.+..|.
T Consensus        20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~   54 (240)
T 2onk_A           20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGE   54 (240)
T ss_dssp             EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence            45778 999999999999999999999999877654

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=98.48  E-value=4.1e-08  Score=71.56  Aligned_cols=37  Identities=24%  Similarity=0.278  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|||||||||+++++.+++.+.+|..
T Consensus        49 l~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I   85 (366)
T 3tui_C           49 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV   85 (366)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEE
Confidence            4478899999999999999999999999998876643

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=98.48  E-value=4.1e-08  Score=71.43  Aligned_cols=36  Identities=19%  Similarity=0.283  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.++++++|+|||||||||+++++++++.+..|.
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~   59 (362)
T 2it1_A           24 LKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK   59 (362)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceE
Confidence            457889999999999999999999999999887664

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=98.47  E-value=4.2e-08  Score=71.61  Aligned_cols=36  Identities=19%  Similarity=0.372  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.++++++|+|||||||||+++++++++.+.+|.
T Consensus        24 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~   59 (372)
T 1g29_1           24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ   59 (372)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccE
Confidence            457889999999999999999999999999877664

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=98.47  E-value=4.4e-08  Score=71.53  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=32.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|||||||||+++++++++.+.+|..
T Consensus        32 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   68 (372)
T 1v43_A           32 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI   68 (372)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEE
Confidence            4477899999999999999999999999998876643

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=98.46  E-value=3.8e-08  Score=68.18  Aligned_cols=36  Identities=14%  Similarity=0.187  Sum_probs=32.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|++++|+|+|||||||+++++++++.+. |..
T Consensus        21 l~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i   56 (249)
T 2qi9_C           21 GEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSI   56 (249)
T ss_dssp             EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEE
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEE
Confidence            457889999999999999999999999999877 654

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=98.46  E-value=4.1e-08  Score=67.89  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=30.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHH--hhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQY--LAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~--~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||++++++++  +.+.+|.
T Consensus        24 l~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~   61 (250)
T 2d2e_A           24 LVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGE   61 (250)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceE
Confidence            55789999999999999999999999998  5555553

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=98.46  E-value=3.4e-08  Score=71.52  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.++++++|+|||||||||+++++++++.+..|..
T Consensus        21 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I   57 (348)
T 3d31_A           21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI   57 (348)
T ss_dssp             EEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEE
Confidence            5578899999999999999999999999998876643

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=98.45  E-value=1.4e-07  Score=63.66  Aligned_cols=49  Identities=27%  Similarity=0.223  Sum_probs=37.1

Q ss_pred             CCCeeeeehhhhhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          21 LSPHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        21 ~~phiy~~~~~~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      +.|..|.- ..++.+  +.++++++|+|+|||||||++++++++ .+.+|...
T Consensus         5 i~pk~~g~-~~~l~~--i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~   53 (208)
T 3b85_A            5 IRPKTLGQ-KHYVDA--IDTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS   53 (208)
T ss_dssp             CCCCSHHH-HHHHHH--HHHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS
T ss_pred             cccCCHhH-HHHHHh--ccCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee
Confidence            34555532 124344  367999999999999999999999999 88888763

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=98.44  E-value=4.4e-08  Score=69.30  Aligned_cols=36  Identities=22%  Similarity=0.420  Sum_probs=32.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus        59 l~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~   94 (290)
T 2bbs_A           59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGK   94 (290)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEE
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcE
Confidence            446789999999999999999999999999877664

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=98.43  E-value=3.3e-08  Score=71.71  Aligned_cols=36  Identities=19%  Similarity=0.279  Sum_probs=32.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.++++++|+|||||||||+++++++++.+..|.
T Consensus        26 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~   61 (353)
T 1oxx_K           26 INIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE   61 (353)
T ss_dssp             EEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEE
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence            457889999999999999999999999999887664

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=98.43  E-value=1.7e-07  Score=62.68  Aligned_cols=31  Identities=26%  Similarity=0.404  Sum_probs=25.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+.++++++|+|||||||||+++++++++.
T Consensus        15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~   45 (207)
T 1znw_A           15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP   45 (207)
T ss_dssp             ----CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            3567899999999999999999999999984

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=98.42  E-value=3.7e-08  Score=70.21  Aligned_cols=37  Identities=19%  Similarity=0.390  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.++++++|+|+|||||||+++++++++.+..|..
T Consensus        75 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I  111 (306)
T 3nh6_A           75 FTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI  111 (306)
T ss_dssp             EEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEE
Confidence            4467899999999999999999999999998877654

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=98.41  E-value=3e-07  Score=64.00  Aligned_cols=41  Identities=17%  Similarity=0.347  Sum_probs=34.4

Q ss_pred             hhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh-CCCC
Q psy7658          32 AYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAV-NKSP   72 (114)
Q Consensus        32 ~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~-~g~~   72 (114)
                      +++.+...++++++|+|+|||||||+++.+++++.+. .|..
T Consensus        16 vl~~i~i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I   57 (261)
T 2eyu_A           16 KVLELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHI   57 (261)
T ss_dssp             HHHHGGGCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEE
T ss_pred             HHHHHhhCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEE
Confidence            4455557789999999999999999999999999876 6643

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=98.41  E-value=1.6e-07  Score=63.42  Aligned_cols=30  Identities=27%  Similarity=0.296  Sum_probs=25.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +.+.++++++|+|||||||||+++++++++
T Consensus        18 l~i~~G~~~~lvGpsGsGKSTLl~~L~g~~   47 (218)
T 1z6g_A           18 GSMNNIYPLVICGPSGVGKGTLIKKLLNEF   47 (218)
T ss_dssp             ----CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred             eecCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence            456789999999999999999999999987

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=98.40  E-value=7.3e-08  Score=67.29  Aligned_cols=36  Identities=22%  Similarity=0.278  Sum_probs=30.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh--hhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL--AAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~--~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++  .+..|.
T Consensus        41 l~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~   78 (267)
T 2zu0_C           41 LDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGT   78 (267)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeE
Confidence            446789999999999999999999999984  344443

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=98.39  E-value=7.3e-08  Score=67.04  Aligned_cols=35  Identities=23%  Similarity=0.458  Sum_probs=30.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++++++++.+ .|.
T Consensus        41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~   75 (260)
T 2ghi_A           41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGD   75 (260)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEE
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeE
Confidence            55788999999999999999999999999864 453

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=98.38  E-value=2.3e-07  Score=60.40  Aligned_cols=36  Identities=28%  Similarity=0.414  Sum_probs=29.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHH------------HHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTK------------LVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~------------~i~~~~~~~~g~   71 (114)
                      |...++++++++|+|||||||+++            .+.+++....+.
T Consensus         4 l~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~   51 (171)
T 4gp7_A            4 LTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDEND   51 (171)
T ss_dssp             EEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTC
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccc
Confidence            556789999999999999999999            666666555443

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=98.37  E-value=2.8e-07  Score=60.90  Aligned_cols=29  Identities=31%  Similarity=0.487  Sum_probs=25.5

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..++++++|+|++||||||+++++.+++.
T Consensus         4 m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~   32 (205)
T 3tr0_A            4 MNKANLFIISAPSGAGKTSLVRALVKALA   32 (205)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred             CCCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence            35689999999999999999999999863

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=98.37  E-value=9.2e-08  Score=66.75  Aligned_cols=35  Identities=29%  Similarity=0.405  Sum_probs=31.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +... +++++|+|+|||||||+++++++++ +..|..
T Consensus        26 l~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I   60 (263)
T 2pjz_A           26 LEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNI   60 (263)
T ss_dssp             EEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEE
T ss_pred             EEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEE
Confidence            5578 9999999999999999999999999 876654

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=98.33  E-value=3.7e-07  Score=59.46  Aligned_cols=37  Identities=14%  Similarity=0.199  Sum_probs=31.1

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ++....++.++|.|++|+||||+++.+++.+.+..|.
T Consensus        32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~   68 (180)
T 3ec2_A           32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI   68 (180)
T ss_dssp             SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred             hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence            3445568999999999999999999999999866553

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=98.32  E-value=1.5e-07  Score=69.05  Aligned_cols=35  Identities=26%  Similarity=0.360  Sum_probs=30.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      |.+.++++++|+|||||||||+++++++++. ..|.
T Consensus        42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~   76 (390)
T 3gd7_A           42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGE   76 (390)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEE
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeE
Confidence            4478899999999999999999999999987 5553

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.31  E-value=1.7e-07  Score=71.31  Aligned_cols=49  Identities=20%  Similarity=0.388  Sum_probs=38.0

Q ss_pred             CCeeeeehhhhhhh--ch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          22 SPHLFAIGSAAYSA--LA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        22 ~phiy~~~~~~~~~--l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +-|-|...  .|+-  +. ..+|++++|+|||||||||+++++++.+.+..|..
T Consensus         5 ~~~~~~~~--~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i   56 (538)
T 3ozx_A            5 VIHRYKVN--GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDP   56 (538)
T ss_dssp             EEEESSTT--SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCT
T ss_pred             CceecCCC--ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCcc
Confidence            34666433  3332  43 46799999999999999999999999998888765

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=98.30  E-value=6.1e-07  Score=63.70  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=31.6

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ...++++++++|++||||||+++.+++++.+.+|+.
T Consensus        96 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V  131 (302)
T 3b9q_A           96 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV  131 (302)
T ss_dssp             CSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeE
Confidence            345789999999999999999999999998877654

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=98.28  E-value=5.9e-07  Score=63.99  Aligned_cols=30  Identities=13%  Similarity=0.320  Sum_probs=27.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +.+.++++++|+|++||||||+++++++++
T Consensus       121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~  150 (305)
T 2v9p_A          121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL  150 (305)
T ss_dssp             HTCTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred             EEecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence            346789999999999999999999999998

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=98.27  E-value=6.5e-07  Score=59.79  Aligned_cols=30  Identities=37%  Similarity=0.562  Sum_probs=27.4

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .++++++|+|+|||||||+++.+.+++.+.
T Consensus        20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~   49 (208)
T 3c8u_A           20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQ   49 (208)
T ss_dssp             CSCEEEEEECCTTSCTHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence            568999999999999999999999999753

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=98.27  E-value=3.5e-07  Score=69.97  Aligned_cols=37  Identities=24%  Similarity=0.407  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus       364 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i  400 (582)
T 3b5x_A          364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSI  400 (582)
T ss_pred             EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence            3467899999999999999999999999999888754

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=98.26  E-value=5e-07  Score=67.58  Aligned_cols=36  Identities=28%  Similarity=0.381  Sum_probs=32.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC-C
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK-S   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g-~   71 (114)
                      +....|++++|+|++||||||++|+++++..+..| .
T Consensus       133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~  169 (460)
T 2npi_A          133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQ  169 (460)
T ss_dssp             HHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCC
T ss_pred             eEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCce
Confidence            44678999999999999999999999999988887 6

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=98.26  E-value=7.5e-07  Score=59.24  Aligned_cols=29  Identities=28%  Similarity=0.363  Sum_probs=25.1

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..++++++|+|++||||||+++.+.+++.
T Consensus         3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~   31 (211)
T 3asz_A            3 APKPFVIGIAGGTASGKTTLAQALARTLG   31 (211)
T ss_dssp             --CCEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred             CCCcEEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35678999999999999999999999865

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=98.25  E-value=8.8e-07  Score=63.14  Aligned_cols=33  Identities=15%  Similarity=0.287  Sum_probs=29.5

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      ..++++++|+|+|||||||+++.+.+++.+..|
T Consensus        87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G  119 (312)
T 3aez_A           87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDH  119 (312)
T ss_dssp             SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTT
T ss_pred             CCCCEEEEEECCCCchHHHHHHHHHhhccccCC
Confidence            466899999999999999999999999987654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=98.24  E-value=7.7e-07  Score=60.44  Aligned_cols=30  Identities=17%  Similarity=0.338  Sum_probs=26.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ..++++++|+|||||||||+++.+++.+.+
T Consensus        13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p   42 (219)
T 1s96_A           13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPL   42 (219)
T ss_dssp             --CCCEEEEECCTTSCHHHHHHHHHHHSCT
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHhccCCC
Confidence            457899999999999999999999999864

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.23  E-value=5.4e-07  Score=68.50  Aligned_cols=35  Identities=26%  Similarity=0.302  Sum_probs=31.9

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+|++++|+|+|||||||+++++.+.+.+..|..
T Consensus        44 i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~   78 (538)
T 1yqt_A           44 VKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGD   78 (538)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc
Confidence            57899999999999999999999999998887763

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=98.23  E-value=4.3e-07  Score=61.50  Aligned_cols=30  Identities=27%  Similarity=0.395  Sum_probs=21.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHH-HHh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVM-QYL   65 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~-~~~   65 (114)
                      |...++++++|+|++||||||+++.+. +++
T Consensus        22 l~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~   52 (231)
T 3lnc_A           22 MLKSVGVILVLSSPSGCGKTTVANKLLEKQK   52 (231)
T ss_dssp             CCEECCCEEEEECSCC----CHHHHHHC---
T ss_pred             cccCCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence            556789999999999999999999999 886

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=98.22  E-value=4.7e-07  Score=69.83  Aligned_cols=35  Identities=20%  Similarity=0.190  Sum_probs=32.4

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ..+|++++|+|||||||||+++++.+++.+..|..
T Consensus       100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i  134 (608)
T 3j16_B          100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRF  134 (608)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence            46799999999999999999999999999988875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=98.22  E-value=5.6e-07  Score=68.43  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=31.5

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+|++++|+|+|||||||+++++++++.+..|..
T Consensus       309 i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i  343 (538)
T 1yqt_A          309 IKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI  343 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            36799999999999999999999999998877754

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=98.22  E-value=4.4e-07  Score=69.03  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=32.1

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.++++++|+|+|||||||+++++++++.+..|..
T Consensus       291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i  325 (538)
T 3ozx_A          291 AKEGEIIGILGPNGIGKTTFARILVGEITADEGSV  325 (538)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCE
T ss_pred             ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEE
Confidence            46899999999999999999999999999888765

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=98.21  E-value=8.1e-07  Score=59.09  Aligned_cols=27  Identities=41%  Similarity=0.560  Sum_probs=23.5

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .++.++|+|||||||||+++.+++++.
T Consensus         3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~   29 (198)
T 1lvg_A            3 GPRPVVLSGPSGAGKSTLLKKLFQEHS   29 (198)
T ss_dssp             --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence            468899999999999999999999875

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=98.21  E-value=8.8e-07  Score=58.47  Aligned_cols=32  Identities=25%  Similarity=0.423  Sum_probs=26.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      |.+.++++++|+|++||||||+++.+.+.+.+
T Consensus         1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~   32 (207)
T 2j41_A            1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPST   32 (207)
T ss_dssp             ---CCCCEEEEECSTTSCHHHHHHHHHHCTTC
T ss_pred             CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCC
Confidence            34567899999999999999999999998733

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.21  E-value=5.8e-07  Score=69.28  Aligned_cols=35  Identities=23%  Similarity=0.289  Sum_probs=31.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+|++++|+|+|||||||+++++++++.+..|..
T Consensus       379 v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I  413 (607)
T 3bk7_A          379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV  413 (607)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence            36799999999999999999999999998877754

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=98.21  E-value=5.9e-07  Score=65.13  Aligned_cols=37  Identities=35%  Similarity=0.450  Sum_probs=32.2

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ++.+.+++.++|+|++||||||+++.+++++.+..|.
T Consensus       169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~  205 (361)
T 2gza_A          169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRL  205 (361)
T ss_dssp             HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCE
T ss_pred             HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceE
Confidence            3446789999999999999999999999999876653

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=98.21  E-value=1.1e-06  Score=63.86  Aligned_cols=36  Identities=22%  Similarity=0.262  Sum_probs=31.5

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ...++++++++|++|+||||+++.+++++.+.+|+.
T Consensus       153 ~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V  188 (359)
T 2og2_A          153 GFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKV  188 (359)
T ss_dssp             CSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             ecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEE
Confidence            345789999999999999999999999998877654

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=98.21  E-value=1e-06  Score=60.25  Aligned_cols=30  Identities=23%  Similarity=0.415  Sum_probs=25.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      |...++.+++|+|++||||||+++.+.+.+
T Consensus        20 l~i~~g~iigI~G~~GsGKSTl~k~L~~~l   49 (245)
T 2jeo_A           20 FQSMRPFLIGVSGGTASGKSTVCEKIMELL   49 (245)
T ss_dssp             ---CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence            456789999999999999999999999875

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=98.19  E-value=1.2e-06  Score=57.31  Aligned_cols=27  Identities=15%  Similarity=0.308  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .++.++|+|||||||||+++.+++.+.
T Consensus         4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~   30 (180)
T 1kgd_A            4 MRKTLVLLGAHGVGRRHIKNTLITKHP   30 (180)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence            478999999999999999999999875

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=98.19  E-value=4e-07  Score=69.64  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus       364 ~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i  400 (582)
T 3b60_A          364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI  400 (582)
T ss_dssp             EEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE
Confidence            4467899999999999999999999999998877643

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=98.19  E-value=1.1e-06  Score=66.18  Aligned_cols=36  Identities=19%  Similarity=0.173  Sum_probs=31.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+ ++++|+|+|||||||+++++++++.+..|..
T Consensus        25 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I   60 (483)
T 3euj_A           25 FDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLL   60 (483)
T ss_dssp             EECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTC
T ss_pred             EEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEE
Confidence            44667 9999999999999999999999998887764

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=98.18  E-value=1.3e-06  Score=58.08  Aligned_cols=29  Identities=24%  Similarity=0.339  Sum_probs=26.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      +++++|+|++|+||||+++++++++. ..|
T Consensus         1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G   29 (189)
T 2i3b_A            1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG   29 (189)
T ss_dssp             CCCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred             CCEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence            57899999999999999999999997 665

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=98.17  E-value=1.8e-06  Score=61.30  Aligned_cols=33  Identities=27%  Similarity=0.426  Sum_probs=29.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ++++++|+|++||||||+++.+++++.+.+|..
T Consensus       101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V  133 (304)
T 1rj9_A          101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKV  133 (304)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEE
Confidence            578999999999999999999999998876643

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=98.15  E-value=1.6e-06  Score=65.39  Aligned_cols=35  Identities=23%  Similarity=0.288  Sum_probs=31.1

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ...+++++|+|++||||||+++.+++++...+|..
T Consensus       290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V  324 (503)
T 2yhs_A          290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSV  324 (503)
T ss_dssp             SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeE
Confidence            45689999999999999999999999998876654

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=98.14  E-value=1.3e-06  Score=57.08  Aligned_cols=27  Identities=26%  Similarity=0.569  Sum_probs=24.9

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ..++++++|+|++||||||+++.+.+.
T Consensus         6 i~~g~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A            6 DLGGNILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             CCTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHhc
Confidence            567899999999999999999999886

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=98.14  E-value=2.5e-06  Score=56.55  Aligned_cols=31  Identities=32%  Similarity=0.361  Sum_probs=27.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +....+++++|+|++||||||+++.+.+.+.
T Consensus        20 ~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~   50 (200)
T 3uie_A           20 LLDQKGCVIWVTGLSGSGKSTLACALNQMLY   50 (200)
T ss_dssp             HHTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             hcCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4456789999999999999999999999886

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=98.14  E-value=6.6e-07  Score=64.21  Aligned_cols=36  Identities=25%  Similarity=0.436  Sum_probs=31.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +...+++.++|+|++||||||+++.+++++.+..|.
T Consensus       166 ~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~  201 (330)
T 2pt7_A          166 DGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERI  201 (330)
T ss_dssp             HHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCE
T ss_pred             hhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcE
Confidence            346779999999999999999999999999876654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.13  E-value=5e-07  Score=69.34  Aligned_cols=37  Identities=27%  Similarity=0.402  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus       376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i  412 (598)
T 3qf4_B          376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI  412 (598)
T ss_dssp             EECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEE
Confidence            3467899999999999999999999999998887654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=98.13  E-value=2.5e-06  Score=61.84  Aligned_cols=38  Identities=21%  Similarity=0.504  Sum_probs=31.8

Q ss_pred             hhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658          32 AYSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        32 ~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~   69 (114)
                      .++.+...++..++|+|++||||||+++.+++++.+..
T Consensus       114 ~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~  151 (356)
T 3jvv_A          114 VFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK  151 (356)
T ss_dssp             HHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC
Confidence            34455556778999999999999999999999998763

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.12  E-value=2.2e-06  Score=61.51  Aligned_cols=34  Identities=26%  Similarity=0.299  Sum_probs=30.7

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      .++++++++|++|+||||+++.+++++.+.+|..
T Consensus       127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V  160 (328)
T 3e70_C          127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSV  160 (328)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEE
Confidence            4689999999999999999999999998887754

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=98.12  E-value=1e-06  Score=67.94  Aligned_cols=35  Identities=29%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+|++++|+|+|||||||+++++.+++.+..|..
T Consensus       114 i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~  148 (607)
T 3bk7_A          114 VKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCED  148 (607)
T ss_dssp             CCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTT
T ss_pred             CCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCcc
Confidence            56899999999999999999999999998887763

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=98.12  E-value=2.8e-07  Score=70.43  Aligned_cols=37  Identities=22%  Similarity=0.374  Sum_probs=32.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|||||||||+++.+++++.+..|+.
T Consensus       362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i  398 (578)
T 4a82_A          362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI  398 (578)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEE
Confidence            4468899999999999999999999999998887654

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=98.11  E-value=2.3e-06  Score=56.71  Aligned_cols=29  Identities=34%  Similarity=0.344  Sum_probs=24.3

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....+++++|+|++||||||+++.+.+.+
T Consensus        25 ~~~~g~~i~l~G~~GsGKSTl~~~L~~~~   53 (200)
T 4eun_A           25 TGEPTRHVVVMGVSGSGKTTIAHGVADET   53 (200)
T ss_dssp             ---CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cCCCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            34568999999999999999999998876

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=98.11  E-value=2.7e-06  Score=61.90  Aligned_cols=38  Identities=18%  Similarity=0.410  Sum_probs=31.9

Q ss_pred             hhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh-CCC
Q psy7658          34 SALATSGNQVVVISGESGSGKTECTKLVMQYLAAV-NKS   71 (114)
Q Consensus        34 ~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~-~g~   71 (114)
                      +.+...+++.++|+|++||||||+++.+++++.+. .|.
T Consensus       129 ~~l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~  167 (372)
T 2ewv_A          129 LELCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYH  167 (372)
T ss_dssp             HHHTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCE
T ss_pred             HHHhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcE
Confidence            33445678999999999999999999999999876 553

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=98.10  E-value=1.8e-06  Score=57.72  Aligned_cols=30  Identities=23%  Similarity=0.323  Sum_probs=26.9

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ..++++++|+|+|||||||+++.+++....
T Consensus        22 i~~G~~~~l~G~nGsGKSTll~~l~g~~~~   51 (231)
T 4a74_A           22 IETQAITEVFGEFGSGKTQLAHTLAVMVQL   51 (231)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence            567999999999999999999999986654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=98.10  E-value=2.7e-06  Score=60.28  Aligned_cols=34  Identities=15%  Similarity=0.297  Sum_probs=29.2

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh--hhCCCC
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA--AVNKSP   72 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~--~~~g~~   72 (114)
                      ..+++++|+|++||||||+++.+.+++.  +..|..
T Consensus        78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i  113 (308)
T 1sq5_A           78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRV  113 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCE
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeE
Confidence            5689999999999999999999999887  555543

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=98.08  E-value=2.7e-06  Score=55.94  Aligned_cols=24  Identities=38%  Similarity=0.654  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .++|+|++||||||+++.+++++.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~l~   25 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVERLG   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            588999999999999999999884

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=98.08  E-value=2.1e-06  Score=59.99  Aligned_cols=29  Identities=21%  Similarity=0.369  Sum_probs=22.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      .++|+|+||+||||+++.+++...+..|.
T Consensus         4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~   32 (270)
T 3sop_A            4 NIMVVGQSGLGKSTLVNTLFKSQVSRKAS   32 (270)
T ss_dssp             EEEEEESSSSSHHHHHHHHHHHHC-----
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence            47899999999999999999999887664

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=98.08  E-value=3.1e-06  Score=62.59  Aligned_cols=39  Identities=21%  Similarity=0.419  Sum_probs=31.6

Q ss_pred             hhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          33 YSALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        33 ~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ++.+...++++++|+|++||||||+++.+++++.+..|.
T Consensus       159 L~~l~~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~  197 (418)
T 1p9r_A          159 FRRLIKRPHGIILVTGPTGSGKSTTLYAGLQELNSSERN  197 (418)
T ss_dssp             HHHHHTSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred             HHHHHHhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCE
Confidence            333333568899999999999999999999999776554

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=98.07  E-value=5.9e-07  Score=68.86  Aligned_cols=37  Identities=22%  Similarity=0.390  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++.+++++.+..|..
T Consensus       364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i  400 (587)
T 3qf4_A          364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRV  400 (587)
T ss_dssp             EEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEE
Confidence            3467899999999999999999999999998877654

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.05  E-value=4.9e-06  Score=59.80  Aligned_cols=36  Identities=25%  Similarity=0.262  Sum_probs=31.4

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ....+++++|+|++|+||||+++.+++++.+.+|..
T Consensus        51 ~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v   86 (337)
T 2qm8_A           51 QTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKV   86 (337)
T ss_dssp             GCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCE
T ss_pred             ccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEE
Confidence            357799999999999999999999999988766643

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=98.02  E-value=3.7e-06  Score=56.18  Aligned_cols=29  Identities=28%  Similarity=0.410  Sum_probs=25.8

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ..+++++|+||+|+||||+++.+++.+..
T Consensus         6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~   34 (208)
T 3tau_A            6 ERGLLIVLSGPSGVGKGTVREAVFKDPET   34 (208)
T ss_dssp             CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred             CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence            45789999999999999999999998754

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=98.01  E-value=4.5e-06  Score=55.94  Aligned_cols=32  Identities=22%  Similarity=0.404  Sum_probs=26.4

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +|....++.++|+||||+||||+++.+++...
T Consensus        13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~   44 (197)
T 3ney_A           13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP   44 (197)
T ss_dssp             ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence            35556789999999999999999999998875

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=98.01  E-value=3.2e-06  Score=61.04  Aligned_cols=32  Identities=19%  Similarity=0.248  Sum_probs=29.0

Q ss_pred             hcC--CcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658          38 TSG--NQVVVISGESGSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        38 ~~~--~~~i~l~G~sGsGKst~~~~i~~~~~~~~   69 (114)
                      +.+  ++.++|+|++||||||+++.+++++.+..
T Consensus       165 v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~  198 (365)
T 1lw7_A          165 ARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS  198 (365)
T ss_dssp             TGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred             HHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence            456  89999999999999999999999998766

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=97.99  E-value=3.1e-06  Score=65.26  Aligned_cols=31  Identities=32%  Similarity=0.510  Sum_probs=28.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +++++|+|+|||||||+++++.+++.+..|.
T Consensus       378 GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~  408 (608)
T 3j16_B          378 SEILVMMGENGTGKTTLIKLLAGALKPDEGQ  408 (608)
T ss_dssp             TCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred             ceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence            4889999999999999999999999888774

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=97.99  E-value=2.6e-06  Score=62.95  Aligned_cols=30  Identities=23%  Similarity=0.324  Sum_probs=27.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +++|+|+||+||||+++.++++..+..|..
T Consensus        71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI  100 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRGIGNEEEGAA  100 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTCCTTSTTSC
T ss_pred             EEEEECCCCCcHHHHHHHHhCCCCccCceE
Confidence            999999999999999999999988877654

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=97.97  E-value=3.4e-06  Score=63.81  Aligned_cols=34  Identities=26%  Similarity=0.417  Sum_probs=29.8

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      .+..++.++|+|++||||||+++.+++++.+..|
T Consensus       256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g  289 (511)
T 2oap_1          256 AIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAK  289 (511)
T ss_dssp             HHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC
T ss_pred             HHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC
Confidence            3567899999999999999999999999976644

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=97.95  E-value=3.8e-06  Score=60.72  Aligned_cols=46  Identities=24%  Similarity=0.201  Sum_probs=35.8

Q ss_pred             eeeehhhhhhh-chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          25 LFAIGSAAYSA-LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        25 iy~~~~~~~~~-l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      .|.....+... +.+.+||+++|.|++|+||||+++.++++..+..|
T Consensus        54 ~~~tg~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g  100 (347)
T 2obl_A           54 PFILGVRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGASADII  100 (347)
T ss_dssp             EECCSCHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred             ecCCCCEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE
Confidence            34434445555 34678999999999999999999999999876644

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=97.95  E-value=8.9e-06  Score=53.97  Aligned_cols=34  Identities=38%  Similarity=0.360  Sum_probs=28.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ...+.+++|+|++||||||+++.+.+.+...++.
T Consensus        19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~   52 (201)
T 1rz3_A           19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGIS   52 (201)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCe
Confidence            3457899999999999999999999988665443

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=97.95  E-value=4.1e-06  Score=62.30  Aligned_cols=41  Identities=24%  Similarity=0.214  Sum_probs=33.7

Q ss_pred             hhhhhh-chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          30 SAAYSA-LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        30 ~~~~~~-l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      ..+... +.+.+||+++|.|+|||||||+++.++++..+..|
T Consensus       145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G  186 (438)
T 2dpy_A          145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI  186 (438)
T ss_dssp             CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred             ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence            345544 34678999999999999999999999999877654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=97.93  E-value=8.1e-06  Score=54.00  Aligned_cols=30  Identities=23%  Similarity=0.347  Sum_probs=24.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      |...++++|+|+|++||||||+++.+.+.+
T Consensus        20 ~~~~~~~~i~l~G~~GsGKsTl~~~La~~l   49 (199)
T 3vaa_A           20 FQSNAMVRIFLTGYMGAGKTTLGKAFARKL   49 (199)
T ss_dssp             ----CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence            345678899999999999999999998765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.93  E-value=1.4e-06  Score=70.32  Aligned_cols=37  Identities=16%  Similarity=0.253  Sum_probs=32.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+..|++++|+|+|||||||+++++.+++.+..|..
T Consensus       694 l~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I  730 (986)
T 2iw3_A          694 FQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV  730 (986)
T ss_dssp             EEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEE
Confidence            4467899999999999999999999999998877654

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.91  E-value=7.7e-06  Score=52.53  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +..++|+|++||||||+++.+.+.+.
T Consensus         4 ~~~i~l~G~~GsGKSTl~~~La~~l~   29 (173)
T 1kag_A            4 KRNIFLVGPMGAGKSTIGRQLAQQLN   29 (173)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhC
Confidence            56899999999999999999998764

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=97.90  E-value=1e-05  Score=52.22  Aligned_cols=27  Identities=33%  Similarity=0.497  Sum_probs=23.8

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++++++|+|++||||||+++.+.+.+
T Consensus         6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~   32 (175)
T 1knq_A            6 HDHHIYVLMGVSGSGKSAVASEVAHQL   32 (175)
T ss_dssp             TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHhh
Confidence            347899999999999999999998764

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=97.90  E-value=1.2e-05  Score=56.25  Aligned_cols=35  Identities=20%  Similarity=0.349  Sum_probs=31.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      +...++++++|+|++|+||||+++.+++.+.+..|
T Consensus        30 ~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G   64 (296)
T 1cr0_A           30 LGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG   64 (296)
T ss_dssp             CSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred             cCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence            34678999999999999999999999999987755

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.90  E-value=6.9e-06  Score=53.67  Aligned_cols=24  Identities=25%  Similarity=0.484  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      +++++|+|++||||||+++.+.+.
T Consensus         2 g~ii~l~G~~GaGKSTl~~~L~~~   25 (189)
T 2bdt_A            2 KKLYIITGPAGVGKSTTCKRLAAQ   25 (189)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHhcc
Confidence            468999999999999999999873

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=97.89  E-value=9.5e-06  Score=61.95  Aligned_cols=34  Identities=21%  Similarity=0.303  Sum_probs=29.9

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      ....+++++|+|++||||||+++.+.+.+.+..|
T Consensus       365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G  398 (552)
T 3cr8_A          365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGG  398 (552)
T ss_dssp             GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred             ccccceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence            3567899999999999999999999999876554

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=97.88  E-value=1.4e-05  Score=53.15  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=29.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ..++++++|.|++|+||||+++.+++......+.
T Consensus        20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~   53 (235)
T 2w0m_A           20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDP   53 (235)
T ss_dssp             EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCC
T ss_pred             CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCe
Confidence            4578999999999999999999999887765543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.87  E-value=3e-06  Score=70.20  Aligned_cols=37  Identities=19%  Similarity=0.395  Sum_probs=33.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+++||.++|+|+|||||||+++.+.+++.+..|..
T Consensus      1100 l~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I 1136 (1321)
T 4f4c_A         1100 FSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEI 1136 (1321)
T ss_dssp             EEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEE
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEE
Confidence            4478999999999999999999999999999988754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.87  E-value=4.9e-06  Score=58.80  Aligned_cols=35  Identities=17%  Similarity=0.153  Sum_probs=28.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ...+++++++|+||+||||+++.+++...+..|..
T Consensus       166 ~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i  200 (301)
T 1u0l_A          166 YLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEV  200 (301)
T ss_dssp             HHSSSEEEEECSTTSSHHHHHHHHSTTCCCC----
T ss_pred             HhcCCeEEEECCCCCcHHHHHHHhcccccccccce
Confidence            45689999999999999999999999987776643

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=97.85  E-value=5e-06  Score=54.45  Aligned_cols=27  Identities=33%  Similarity=0.380  Sum_probs=25.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +.++|+|+|||||||+++.+++++.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~   29 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPILRER   29 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            578999999999999999999999876

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.82  E-value=3.7e-06  Score=69.50  Aligned_cols=37  Identities=24%  Similarity=0.424  Sum_probs=32.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|+|||||||+++++.+++.+..|..
T Consensus       411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i  447 (1284)
T 3g5u_A          411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV  447 (1284)
T ss_dssp             EEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence            3468899999999999999999999999998877653

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=97.81  E-value=4.9e-06  Score=56.76  Aligned_cols=24  Identities=33%  Similarity=0.356  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      ..++++|+|++||||||+++.+..
T Consensus        26 ~~~~i~l~G~~GsGKSTl~k~La~   49 (246)
T 2bbw_A           26 KLLRAVILGPPGSGKGTVCQRIAQ   49 (246)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            468999999999999999999993

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=97.81  E-value=1.5e-05  Score=50.81  Aligned_cols=36  Identities=19%  Similarity=0.230  Sum_probs=29.0

Q ss_pred             hhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          32 AYSALATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        32 ~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ++..+..-+++.++|.|++|+|||++++.+++.+..
T Consensus        27 ~~~~l~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~   62 (149)
T 2kjq_A           27 LVYVLRHKHGQFIYVWGEEGAGKSHLLQAWVAQALE   62 (149)
T ss_dssp             HHHHCCCCCCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred             HHHHHHhcCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            444443227899999999999999999999998865

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=97.80  E-value=5.2e-06  Score=68.63  Aligned_cols=37  Identities=24%  Similarity=0.444  Sum_probs=32.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|+|||||||+++.+.+++.+..|+.
T Consensus      1054 l~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I 1090 (1284)
T 3g5u_A         1054 LEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSV 1090 (1284)
T ss_dssp             EEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEE
Confidence            4478899999999999999999999999998876643

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.80  E-value=9.3e-06  Score=60.25  Aligned_cols=30  Identities=20%  Similarity=0.284  Sum_probs=26.2

Q ss_pred             chhcCCcE--EEEEcCCCCchHHHHHHHHHHh
Q psy7658          36 LATSGNQV--VVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        36 l~~~~~~~--i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +.+..|++  ++|+|+||+||||+++.+++..
T Consensus        35 l~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~   66 (427)
T 2qag_B           35 KSVSQGFCFNILCVGETGLGKSTLMDTLFNTK   66 (427)
T ss_dssp             HSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC
T ss_pred             eEecCCCeeEEEEECCCCCCHHHHHHHHhCcc
Confidence            44678999  9999999999999999999874

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=97.80  E-value=5.9e-06  Score=56.85  Aligned_cols=25  Identities=28%  Similarity=0.449  Sum_probs=22.7

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      ..+.+|+|+|++||||||+++.+..
T Consensus        25 ~~g~~I~I~G~~GsGKSTl~k~La~   49 (252)
T 4e22_A           25 AIAPVITVDGPSGAGKGTLCKALAE   49 (252)
T ss_dssp             TTSCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999993

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.79  E-value=1.4e-05  Score=56.55  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=29.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS   73 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~   73 (114)
                      ...+++++++|+||+||||+++.++ .+.+..|...
T Consensus       162 ~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~  196 (302)
T 2yv5_A          162 YLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVS  196 (302)
T ss_dssp             HTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC-
T ss_pred             hccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccc
Confidence            4568999999999999999999999 7776666543

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=97.78  E-value=2e-05  Score=51.04  Aligned_cols=28  Identities=25%  Similarity=0.450  Sum_probs=24.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~~~   69 (114)
                      .+.+|+|+|||||||+++.|...+....
T Consensus        27 g~~~i~G~NGsGKStll~ai~~~l~~~~   54 (182)
T 3kta_A           27 GFTAIVGANGSGKSNIGDAILFVLGGLS   54 (182)
T ss_dssp             SEEEEEECTTSSHHHHHHHHHHHTTCCC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence            3899999999999999999998876543

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.76  E-value=6.2e-06  Score=68.35  Aligned_cols=37  Identities=27%  Similarity=0.498  Sum_probs=33.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +...+|+.++|+|++||||||+++.+++++.+..|..
T Consensus       439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I  475 (1321)
T 4f4c_A          439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKI  475 (1321)
T ss_dssp             EEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEE
T ss_pred             EeecCCcEEEEEecCCCcHHHHHHHhccccccccCcc
Confidence            4468899999999999999999999999999887754

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.74  E-value=1.4e-05  Score=58.06  Aligned_cols=33  Identities=15%  Similarity=0.354  Sum_probs=28.3

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh-hhCCC
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA-AVNKS   71 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~-~~~g~   71 (114)
                      ..+++++|+|+||+||||+++.+++... +..|.
T Consensus       213 ~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~  246 (358)
T 2rcn_A          213 LTGRISIFAGQSGVGKSSLLNALLGLQNEILTND  246 (358)
T ss_dssp             HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-
T ss_pred             cCCCEEEEECCCCccHHHHHHHHhccccccccCC
Confidence            4689999999999999999999999887 65553

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.74  E-value=5.3e-06  Score=59.10  Aligned_cols=34  Identities=21%  Similarity=0.306  Sum_probs=24.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ..++++++|+|+||+||||+++.+++...+..|.
T Consensus       170 ~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~  203 (307)
T 1t9h_A          170 HFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNE  203 (307)
T ss_dssp             GGTTSEEEEEESHHHHHHHHHHHHCC--------
T ss_pred             hcCCCEEEEECCCCCCHHHHHHHhcccccccccc
Confidence            4578999999999999999999999888766554

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.74  E-value=2.1e-05  Score=52.13  Aligned_cols=28  Identities=29%  Similarity=0.373  Sum_probs=24.9

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+..++|+|++||||||+++.+...+.
T Consensus        10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~   37 (204)
T 2qor_A           10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP   37 (204)
T ss_dssp             CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence            4578999999999999999999988773

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.73  E-value=2.7e-05  Score=58.83  Aligned_cols=40  Identities=18%  Similarity=0.195  Sum_probs=31.2

Q ss_pred             hhhhh--c-hhcCCcEEEEEcCCCCchHHHHHH--HHHHhhhhCC
Q psy7658          31 AAYSA--L-ATSGNQVVVISGESGSGKTECTKL--VMQYLAAVNK   70 (114)
Q Consensus        31 ~~~~~--l-~~~~~~~i~l~G~sGsGKst~~~~--i~~~~~~~~g   70 (114)
                      .++..  + ...++++++|+|+|||||||+++.  +.+...+..|
T Consensus        26 ~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g   70 (525)
T 1tf7_A           26 EGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP   70 (525)
T ss_dssp             TTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC
T ss_pred             hhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC
Confidence            45544  3 357899999999999999999999  5677775544

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=97.70  E-value=3.1e-05  Score=51.76  Aligned_cols=25  Identities=36%  Similarity=0.527  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++|+|++||||||+++.+.+.+
T Consensus         5 ~~~i~i~G~~GsGKSTl~~~L~~~~   29 (227)
T 1cke_A            5 APVITIDGPSGAGKGTLCKAMAEAL   29 (227)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999998866

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.68  E-value=2.2e-05  Score=63.41  Aligned_cols=28  Identities=21%  Similarity=0.329  Sum_probs=25.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      |.+.+|++++|+|+|||||||+++++.+
T Consensus       456 l~I~~Ge~v~LiGpNGsGKSTLLk~Lag  483 (986)
T 2iw3_A          456 LRLKRARRYGICGPNGCGKSTLMRAIAN  483 (986)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence            4467899999999999999999999984

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.68  E-value=1.8e-05  Score=61.46  Aligned_cols=27  Identities=30%  Similarity=0.498  Sum_probs=23.0

Q ss_pred             hhhh--chhcCCcEEEEEcCCCCchHHHH
Q psy7658          32 AYSA--LATSGNQVVVISGESGSGKTECT   58 (114)
Q Consensus        32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~   58 (114)
                      ++.+  |.+.++++++|+|||||||||++
T Consensus        33 ~L~~vsl~i~~Ge~~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           33 NLKNIDVEIPRGKLVVLTGLSGSGKSSLA   61 (670)
T ss_dssp             TCCSEEEEEETTSEEEEECSTTSSHHHHH
T ss_pred             ceeccEEEECCCCEEEEECCCCCCHHHHh
Confidence            4554  44789999999999999999997

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=97.67  E-value=1.6e-05  Score=53.83  Aligned_cols=27  Identities=33%  Similarity=0.452  Sum_probs=24.4

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ..++++++|.|++||||||+++.+.++
T Consensus        17 ~~~g~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           17 GTQPFTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhc
Confidence            356899999999999999999998887

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=97.65  E-value=2.7e-05  Score=51.53  Aligned_cols=28  Identities=36%  Similarity=0.375  Sum_probs=24.8

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...+.+++|+|++||||||+++.+.+.+
T Consensus        18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~   45 (207)
T 2qt1_A           18 GSKTFIIGISGVTNSGKTTLAKNLQKHL   45 (207)
T ss_dssp             SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence            3457899999999999999999999875

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=97.65  E-value=4.3e-05  Score=53.87  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=26.4

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..+.+|+|+|++||||||+++.+.+++...
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~   58 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK   58 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence            347889999999999999999999998753

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=97.64  E-value=3.2e-06  Score=57.77  Aligned_cols=31  Identities=23%  Similarity=0.244  Sum_probs=27.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ++++|+|||||||||++++|.+++.+..|..
T Consensus        28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i   58 (227)
T 1qhl_A           28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLL   58 (227)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhcccccCCCeE
Confidence            6788999999999999999999998877654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=97.64  E-value=4.3e-05  Score=49.46  Aligned_cols=28  Identities=32%  Similarity=0.487  Sum_probs=24.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .++.++|+|++||||||+++.+...+..
T Consensus         4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~   31 (179)
T 2pez_A            4 RGCTVWLTGLSGAGKTTVSMALEEYLVC   31 (179)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4788999999999999999999987743

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=97.64  E-value=2.8e-05  Score=53.74  Aligned_cols=35  Identities=23%  Similarity=0.305  Sum_probs=27.9

Q ss_pred             hhhhhc--hhcC---CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          31 AAYSAL--ATSG---NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        31 ~~~~~l--~~~~---~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++..+  .+.+   ++.++|+|++||||||+++.+.+.+
T Consensus        33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l   72 (250)
T 3nwj_A           33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL   72 (250)
T ss_dssp             HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence            344443  3556   8999999999999999999998844

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=97.63  E-value=4.4e-05  Score=49.11  Aligned_cols=25  Identities=20%  Similarity=0.501  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +.+|+|+|++||||||+.+.+...+
T Consensus         3 ~~~i~l~G~~GsGKST~a~~La~~l   27 (178)
T 1qhx_A            3 TRMIILNGGSSAGKSGIVRCLQSVL   27 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999988754

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=97.63  E-value=3.9e-05  Score=54.96  Aligned_cols=25  Identities=20%  Similarity=0.464  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +++|+|++||||||+++.+.+++..
T Consensus        94 iigI~GpsGSGKSTl~~~L~~ll~~  118 (321)
T 3tqc_A           94 IIGIAGSVAVGKSTTSRVLKALLSR  118 (321)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhcc
Confidence            8999999999999999999998864

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.61  E-value=6e-05  Score=53.56  Aligned_cols=34  Identities=24%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      ..+++++++|++|+||||++..+++.+...++..
T Consensus       102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV  135 (306)
T 1vma_A          102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSV  135 (306)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred             CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEE
Confidence            4578999999999999999999999998765543

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=97.60  E-value=5.4e-05  Score=48.22  Aligned_cols=24  Identities=13%  Similarity=0.224  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .|+|+|++||||||+++.+...+.
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~l~   26 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKELK   26 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            689999999999999999887753

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=97.59  E-value=1.2e-05  Score=53.02  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=27.8

Q ss_pred             hhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          32 AYSALATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        32 ~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+..+....+..++|+|++|+||||+++.+++..
T Consensus        17 ~l~~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~   50 (210)
T 1pui_A           17 DIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQK   50 (210)
T ss_dssp             SGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred             CHhHCCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            4444667788999999999999999999887765

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=97.59  E-value=4.3e-05  Score=55.81  Aligned_cols=28  Identities=18%  Similarity=0.255  Sum_probs=25.7

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...+++++|.|++|+||||+++.+.+.+
T Consensus       166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~  193 (377)
T 1svm_A          166 IPKKRYWLFKGPIDSGKTTLAAALLELC  193 (377)
T ss_dssp             CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence            5678999999999999999999999875

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=97.58  E-value=2e-05  Score=61.16  Aligned_cols=27  Identities=30%  Similarity=0.433  Sum_probs=23.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      |.+.++++++|+|+|||||||+++.++
T Consensus       343 l~I~~Ge~vaIiGpnGsGKSTLl~~i~  369 (670)
T 3ux8_A          343 VKIPLGTFVAVTGVSGSGKSTLVNEVL  369 (670)
T ss_dssp             EEEETTSEEEEECSTTSSHHHHHTTTH
T ss_pred             eEecCCCEEEEEeeCCCCHHHHHHHHH
Confidence            446789999999999999999997654

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=97.58  E-value=3.3e-05  Score=54.93  Aligned_cols=24  Identities=25%  Similarity=0.419  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ++++|+|++||||||+++.+++..
T Consensus         5 ~v~~i~G~~GaGKTTll~~l~~~~   28 (318)
T 1nij_A            5 AVTLLTGFLGAGKTTLLRHILNEQ   28 (318)
T ss_dssp             EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred             cEEEEEecCCCCHHHHHHHHHhhc
Confidence            578999999999999999999875

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.55  E-value=8.3e-05  Score=52.51  Aligned_cols=31  Identities=19%  Similarity=0.281  Sum_probs=27.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      .+++++++|++|+||||++..+++.+....|
T Consensus       104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G  134 (296)
T 2px0_A          104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKH  134 (296)
T ss_dssp             CSSEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999987555

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=97.55  E-value=5.5e-05  Score=49.87  Aligned_cols=25  Identities=28%  Similarity=0.425  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..+|+|+|++||||||+++.+.+.+
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~l   42 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEAC   42 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999998775

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=97.54  E-value=0.0001  Score=47.96  Aligned_cols=30  Identities=30%  Similarity=0.359  Sum_probs=26.0

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..+..|++.|.+||||||+++.+...+...
T Consensus        11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~   40 (186)
T 2yvu_A           11 EKGIVVWLTGLPGSGKTTIATRLADLLQKE   40 (186)
T ss_dssp             SCCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCcEEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence            457889999999999999999999887643

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=97.54  E-value=9e-05  Score=51.63  Aligned_cols=26  Identities=31%  Similarity=0.351  Sum_probs=22.7

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .-++|.||+|+||||+++.+++.+..
T Consensus        45 ~GvlL~Gp~GtGKTtLakala~~~~~   70 (274)
T 2x8a_A           45 AGVLLAGPPGCGKTLLAKAVANESGL   70 (274)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHcCC
Confidence            33999999999999999999998653

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.53  E-value=6e-05  Score=49.95  Aligned_cols=24  Identities=38%  Similarity=0.540  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..|+|+||||+||+|+++.++...
T Consensus         2 RpIVi~GPSG~GK~Tl~~~L~~~~   25 (186)
T 1ex7_A            2 RPIVISGPSGTGKSTLLKKLFAEY   25 (186)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHhC
Confidence            348999999999999999988764

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=97.51  E-value=8.8e-05  Score=49.34  Aligned_cols=30  Identities=20%  Similarity=0.231  Sum_probs=26.7

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ....+.+++|.|++||||||+++.+.+.+.
T Consensus        21 ~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~   50 (211)
T 1m7g_A           21 RNQRGLTIWLTGLSASGKSTLAVELEHQLV   50 (211)
T ss_dssp             HTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             cCCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            356688999999999999999999998876

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=97.50  E-value=9.5e-05  Score=48.22  Aligned_cols=29  Identities=21%  Similarity=0.455  Sum_probs=24.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      |....+..|+|+|++||||||+++.+...
T Consensus         5 ~~~~~~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A            5 MEQPKGINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             -CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence            33445678999999999999999998887

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=97.48  E-value=8.6e-05  Score=49.84  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=24.7

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ...+++++|.|++|+||||+++.++..
T Consensus        21 i~~G~~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           21 IETGSITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcCCeEEEEECCCCCcHHHHHHHHHHH
Confidence            467999999999999999999999884

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=97.48  E-value=0.0001  Score=47.69  Aligned_cols=26  Identities=42%  Similarity=0.696  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +..|+|.|++||||||+++.+...+.
T Consensus         3 ~~~I~i~G~~GsGKsT~~~~L~~~l~   28 (192)
T 1kht_A            3 NKVVVVTGVPGVGSTTSSQLAMDNLR   28 (192)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            46899999999999999999887654

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.48  E-value=0.00012  Score=52.23  Aligned_cols=34  Identities=21%  Similarity=0.377  Sum_probs=29.4

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      ..++++++++|++|+||||++..++..+...+++
T Consensus       102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~k  135 (320)
T 1zu4_A          102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYK  135 (320)
T ss_dssp             TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence            4567899999999999999999999999876554

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=97.47  E-value=8.5e-05  Score=48.09  Aligned_cols=26  Identities=31%  Similarity=0.377  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+..|+++|++||||||+++.+...+
T Consensus         3 ~g~~I~l~G~~GsGKST~~~~La~~l   28 (186)
T 3cm0_A            3 VGQAVIFLGPPGAGKGTQASRLAQEL   28 (186)
T ss_dssp             CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            35789999999999999999988654

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=97.47  E-value=0.00013  Score=49.70  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..++|.||+|+||||+++.+.+.+.
T Consensus        50 ~g~ll~G~~G~GKTtl~~~i~~~~~   74 (254)
T 1ixz_A           50 KGVLLVGPPGVGKTHLARAVAGEAR   74 (254)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            3489999999999999999998764

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=97.45  E-value=0.00011  Score=48.56  Aligned_cols=26  Identities=19%  Similarity=0.093  Sum_probs=23.9

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      ...+++++|.|++|+||||+++.++.
T Consensus        17 i~~G~~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           17 FAPGVLTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             BCTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999999999887

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=97.45  E-value=8e-05  Score=49.15  Aligned_cols=21  Identities=38%  Similarity=0.591  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      +++|+|++||||||+++.+.+
T Consensus         4 ~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            4 IVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=97.42  E-value=0.0001  Score=48.50  Aligned_cols=21  Identities=19%  Similarity=0.488  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+|+|++||||||+++.+.+
T Consensus         3 ~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            3 RIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHH
Confidence            689999999999999999987

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=97.41  E-value=0.00013  Score=50.64  Aligned_cols=29  Identities=17%  Similarity=0.213  Sum_probs=25.9

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...+++++|.|++|+||||+++.++..+.
T Consensus        27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~~   55 (279)
T 1nlf_A           27 MVAGTVGALVSPGGAGKSMLALQLAAQIA   55 (279)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            45789999999999999999999988665

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=97.41  E-value=0.00013  Score=47.29  Aligned_cols=26  Identities=19%  Similarity=0.429  Sum_probs=22.6

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+..|+|+|++||||||+++.+...+
T Consensus         4 ~~~~I~l~G~~GsGKST~~~~L~~~l   29 (193)
T 2rhm_A            4 TPALIIVTGHPATGKTTLSQALATGL   29 (193)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence            35689999999999999999988765

>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}

Probab=97.41  E-value=3.2e-05  Score=56.33  Aligned_cols=28  Identities=25%  Similarity=0.432  Sum_probs=24.8

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..++ +++|+|+||+||||+++.|..++.
T Consensus        58 ~~~G-~~~lvG~NGaGKStLl~aI~~l~~   85 (415)
T 4aby_A           58 LGGG-FCAFTGETGAGKSIIVDALGLLLG   85 (415)
T ss_dssp             CCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred             cCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence            4567 999999999999999999987775

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=97.40  E-value=9e-05  Score=52.82  Aligned_cols=24  Identities=29%  Similarity=0.523  Sum_probs=22.9

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +.+++.||+|+||||+++.+++.+
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~l   75 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASEL   75 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHHh
Confidence            789999999999999999999988

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=97.40  E-value=0.00014  Score=46.45  Aligned_cols=24  Identities=33%  Similarity=0.346  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      |.|+|.|..||||||..+.+...+
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~l   31 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLAL   31 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            889999999999999999988764

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=97.39  E-value=0.00017  Score=47.26  Aligned_cols=27  Identities=30%  Similarity=0.364  Sum_probs=23.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..++|+|++|+||||+++.+++.+...
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~   33 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIPALCAR   33 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHhcccc
Confidence            578999999999999999999887643

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=97.39  E-value=0.00015  Score=46.89  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...|+++|++||||||+.+.+...+
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~l   29 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKLT   29 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHh
Confidence            4679999999999999999988765

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=97.39  E-value=0.00015  Score=46.82  Aligned_cols=27  Identities=22%  Similarity=0.219  Sum_probs=23.1

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .....|+|+|++|+||||+++.+...+
T Consensus         9 ~~~~~i~i~G~~GsGKst~~~~l~~~~   35 (180)
T 3iij_A            9 MLLPNILLTGTPGVGKTTLGKELASKS   35 (180)
T ss_dssp             CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence            345789999999999999999988665

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=97.38  E-value=0.00019  Score=49.64  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .-++|.||+|+||||+++.+.+.+.
T Consensus        74 ~gvll~Gp~GtGKTtl~~~i~~~~~   98 (278)
T 1iy2_A           74 KGVLLVGPPGVGKTHLARAVAGEAR   98 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEECCCcChHHHHHHHHHHHcC
Confidence            3489999999999999999998764

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=97.37  E-value=4.6e-05  Score=58.70  Aligned_cols=29  Identities=14%  Similarity=0.207  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhh-hCCC
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAA-VNKS   71 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~-~~g~   71 (114)
                      .++|+|++||||||+++.+++++.+ ..|.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~   76 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALSGVALPRGSGI   76 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHHSCC-------
T ss_pred             eEEEECCCCChHHHHHHHHhCCCCCCCCCe
Confidence            3899999999999999999999866 4553

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=97.37  E-value=0.00016  Score=47.25  Aligned_cols=24  Identities=25%  Similarity=0.417  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .|+|.|++||||||+++.+...+.
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~l~   25 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKKLG   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred             EEEEECCCccCHHHHHHHHHHhcC
Confidence            589999999999999999998653

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.35  E-value=0.00013  Score=46.21  Aligned_cols=20  Identities=50%  Similarity=0.880  Sum_probs=18.3

Q ss_pred             cEEEEEcCCCCchHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLV   61 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i   61 (114)
                      .+|+|+|++||||||+++.+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999988

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=97.34  E-value=0.00019  Score=47.27  Aligned_cols=28  Identities=18%  Similarity=0.405  Sum_probs=24.3

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+..|+|+|.+||||||+++.+...+.
T Consensus         7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~   34 (215)
T 1nn5_A            7 RRGALIVLEGVDRAGKSTQSRKLVEALC   34 (215)
T ss_dssp             CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4567899999999999999999987654

>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*

Probab=97.33  E-value=0.00019  Score=56.74  Aligned_cols=30  Identities=20%  Similarity=0.251  Sum_probs=26.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh-hhCC
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA-AVNK   70 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~-~~~g   70 (114)
                      +++++|+||||+||||+++.+++... +..|
T Consensus       576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G  606 (765)
T 1ewq_A          576 HELVLITGPNMAGKSTFLRQTALIALLAQVG  606 (765)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHHHHHHHTTT
T ss_pred             CcEEEEECCCCCChHHHHHHHHhhhhhcccC
Confidence            89999999999999999999998764 3444

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=97.33  E-value=0.00017  Score=51.99  Aligned_cols=28  Identities=25%  Similarity=0.362  Sum_probs=26.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++++.|.|++|+||||+++.++...
T Consensus       128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~  155 (349)
T 1pzn_A          128 IETQAITEVFGEFGSGKTQLAHTLAVMV  155 (349)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            5689999999999999999999999987

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=97.32  E-value=0.00021  Score=46.40  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+..|+|.|++||||||.++.+...+
T Consensus         8 ~~~~I~l~G~~GsGKsT~~~~La~~l   33 (196)
T 2c95_A            8 KTNIIFVVGGPGSGKGTQCEKIVQKY   33 (196)
T ss_dssp             TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999988755

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=97.32  E-value=0.00022  Score=46.96  Aligned_cols=27  Identities=33%  Similarity=0.594  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+..|+|+|.+||||||+++.+...+.
T Consensus         9 ~~~~I~l~G~~GsGKST~~~~L~~~l~   35 (212)
T 2wwf_A            9 KGKFIVFEGLDRSGKSTQSKLLVEYLK   35 (212)
T ss_dssp             CSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             cCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            467899999999999999999987653

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=97.31  E-value=0.00018  Score=46.45  Aligned_cols=24  Identities=25%  Similarity=0.439  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .|+|.|++||||||+++.+...+.
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~l~   26 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEILD   26 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHH
Confidence            689999999999999999988765

>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*

Probab=97.31  E-value=0.00017  Score=57.31  Aligned_cols=27  Identities=15%  Similarity=0.299  Sum_probs=24.5

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++++++|+||||+||||++|.+++..
T Consensus       605 ~~g~i~~ItGpNGsGKSTlLr~iagl~  631 (800)
T 1wb9_A          605 PQRRMLIITGPNMGGKSTYMRQTALIA  631 (800)
T ss_dssp             SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence            468999999999999999999998864

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=97.29  E-value=0.00022  Score=46.03  Aligned_cols=25  Identities=28%  Similarity=0.407  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...|+|+|++||||||.++.+...+
T Consensus         6 ~~~I~l~G~~GsGKsT~~~~L~~~l   30 (194)
T 1qf9_A            6 PNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999887754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=97.28  E-value=0.0002  Score=50.23  Aligned_cols=26  Identities=23%  Similarity=0.441  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+..++|+|++||||||+++.+...+
T Consensus        32 ~~~livl~G~sGsGKSTla~~L~~~~   57 (287)
T 1gvn_B           32 SPTAFLLGGQPGSGKTSLRSAIFEET   57 (287)
T ss_dssp             SCEEEEEECCTTSCTHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999987755

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=97.28  E-value=0.00019  Score=49.32  Aligned_cols=23  Identities=30%  Similarity=0.343  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++|+|++||||||+.+.++..+
T Consensus         3 li~I~G~~GSGKSTla~~La~~~   25 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQET   25 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhcC
Confidence            68899999999999999988765

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.28  E-value=0.00028  Score=49.70  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=28.5

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      .+++++++|++|+||||++..+++.+...++.
T Consensus        97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~  128 (295)
T 1ls1_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR  128 (295)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence            67899999999999999999999999876554

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=97.28  E-value=0.00023  Score=46.73  Aligned_cols=27  Identities=22%  Similarity=0.484  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +..|+|.|++||||||+++.+...+..
T Consensus         4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~   30 (213)
T 2plr_A            4 GVLIAFEGIDGSGKSSQATLLKDWIEL   30 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            568999999999999999999887643

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=97.28  E-value=0.0002  Score=45.84  Aligned_cols=22  Identities=23%  Similarity=0.501  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .+|++.|++||||||+++.+..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            4789999999999999999887

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=97.27  E-value=0.00019  Score=46.81  Aligned_cols=24  Identities=29%  Similarity=0.349  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .++|+|++|+||||+++.+.+...
T Consensus        31 kv~lvG~~g~GKSTLl~~l~~~~~   54 (191)
T 1oix_A           31 KVVLIGDSGVGKSNLLSRFTRNEF   54 (191)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHSCC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCCC
Confidence            588999999999999999988654

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=97.27  E-value=9.3e-05  Score=48.88  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=22.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .|+|.|++||||||+++.+...+..
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~l~~   26 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence            6899999999999999999988753

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=97.27  E-value=0.00021  Score=46.75  Aligned_cols=26  Identities=27%  Similarity=0.373  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+..|+|.|+.||||||.++.+...+
T Consensus         3 ~~~~I~l~G~~GsGKsT~~~~L~~~l   28 (204)
T 2v54_A            3 RGALIVFEGLDKSGKTTQCMNIMESI   28 (204)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred             CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence            35789999999999999999998876

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=97.27  E-value=0.0002  Score=46.09  Aligned_cols=23  Identities=30%  Similarity=0.424  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|+|++||||||+++.+...+
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~l   28 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKDL   28 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHc
Confidence            58899999999999999988765

>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*

Probab=97.27  E-value=0.00014  Score=58.50  Aligned_cols=27  Identities=26%  Similarity=0.410  Sum_probs=23.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ..++++++|+||||+||||+++.+...
T Consensus       670 ~~~g~i~~ItGPNGaGKSTlLr~i~~i  696 (918)
T 3thx_B          670 EDSERVMIITGPNMGGKSSYIKQVALI  696 (918)
T ss_dssp             TTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCchHHHHHHHHHH
Confidence            456899999999999999999987654

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=97.26  E-value=0.0003  Score=50.62  Aligned_cols=30  Identities=23%  Similarity=0.300  Sum_probs=26.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      ...++|+|++|+||||+++.+++.+....+
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~  103 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGH  103 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHHHhhhcCC
Confidence            678999999999999999999998765443

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=97.24  E-value=0.0003  Score=47.93  Aligned_cols=26  Identities=27%  Similarity=0.339  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...++|.||+|+|||++++.+.+.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~~~   70 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGEAK   70 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence            45689999999999999999988764

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=97.23  E-value=0.00028  Score=45.96  Aligned_cols=26  Identities=23%  Similarity=0.385  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+..|+|+|++||||||+++.+...+
T Consensus        11 ~~~~I~l~G~~GsGKsT~a~~L~~~l   36 (199)
T 2bwj_A           11 KCKIIFIIGGPGSGKGTQCEKLVEKY   36 (199)
T ss_dssp             HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence            45789999999999999999988765

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=97.23  E-value=0.00024  Score=46.44  Aligned_cols=23  Identities=30%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++++|++|+||||+++.+.+..
T Consensus         7 kv~lvG~~g~GKSTLl~~l~~~~   29 (199)
T 2f9l_A            7 KVVLIGDSGVGKSNLLSRFTRNE   29 (199)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHhcCC
Confidence            47899999999999999998864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=97.22  E-value=0.00028  Score=45.62  Aligned_cols=25  Identities=24%  Similarity=0.357  Sum_probs=21.5

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +..|+|.|++||||||+++.+...+
T Consensus         3 ~~~I~l~G~~GsGKsT~a~~L~~~~   27 (196)
T 1tev_A            3 PLVVFVLGGPGAGKGTQCARIVEKY   27 (196)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4579999999999999999887654

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=97.22  E-value=0.00033  Score=49.14  Aligned_cols=28  Identities=25%  Similarity=0.304  Sum_probs=24.5

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...+..++|.||+|+|||++++.+...+
T Consensus        46 ~~~~~~vLL~Gp~GtGKT~la~ala~~~   73 (301)
T 3cf0_A           46 MTPSKGVLFYGPPGCGKTLLAKAIANEC   73 (301)
T ss_dssp             CCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence            3557889999999999999999998865

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=97.20  E-value=0.00045  Score=43.99  Aligned_cols=29  Identities=28%  Similarity=0.329  Sum_probs=24.7

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .....++|.|++|+|||++++.++..+..
T Consensus        41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~   69 (195)
T 1jbk_A           41 RTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            34678999999999999999999887743

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=97.20  E-value=0.00032  Score=52.98  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=28.1

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..++++++|.|++|+||||+++.+++...+.
T Consensus       278 i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~  308 (525)
T 1tf7_A          278 FFKDSIILATGATGTGKTLLVSRFVENACAN  308 (525)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence            5679999999999999999999999988764

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=97.18  E-value=0.00021  Score=48.96  Aligned_cols=28  Identities=21%  Similarity=0.440  Sum_probs=24.1

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+..++++|++||||||+++.+...+.
T Consensus        30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~   57 (253)
T 2p5t_B           30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ   57 (253)
T ss_dssp             SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence            3467899999999999999999988764

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=97.18  E-value=0.0004  Score=49.34  Aligned_cols=30  Identities=17%  Similarity=0.337  Sum_probs=25.0

Q ss_pred             hcCCcE--EEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQV--VVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~--i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...++.  +++.||+|+||||+++.+++.+..
T Consensus        41 i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~   72 (340)
T 1sxj_C           41 VDEGKLPHLLFYGPPGTGKTSTIVALAREIYG   72 (340)
T ss_dssp             HHTTCCCCEEEECSSSSSHHHHHHHHHHHHHT
T ss_pred             HhcCCCceEEEECCCCCCHHHHHHHHHHHHcC
Confidence            345555  999999999999999999998753

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=97.17  E-value=0.00034  Score=47.45  Aligned_cols=29  Identities=28%  Similarity=0.389  Sum_probs=26.1

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ..+..|+|.|++||||||.++.+...+..
T Consensus        24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~   52 (229)
T 4eaq_A           24 AMSAFITFEGPEGSGKTTVINEVYHRLVK   52 (229)
T ss_dssp             CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence            36889999999999999999999998864

>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12

Probab=97.17  E-value=0.00031  Score=51.69  Aligned_cols=32  Identities=22%  Similarity=0.289  Sum_probs=26.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~   69 (114)
                      ...+++++|+|+||+||||++..+...+...+
T Consensus        23 ~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~   54 (430)
T 1w1w_A           23 FGESNFTSIIGPNGSGKSNMMDAISFVLGVRS   54 (430)
T ss_dssp             CTTCSEEEEECSTTSSHHHHHHHHHHHTTC--
T ss_pred             ecCCCEEEEECCCCCCHHHHHHHHHhhhcccc
Confidence            34578999999999999999999998886543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.17  E-value=0.00016  Score=51.09  Aligned_cols=28  Identities=25%  Similarity=0.345  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH-hhhhCC
Q psy7658          43 VVVISGESGSGKTECTKLVMQY-LAAVNK   70 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~-~~~~~g   70 (114)
                      .++|+|++|+||||+++.+.+. +.+..|
T Consensus        20 ~I~lvG~nG~GKSTLl~~L~g~~~~~~~g   48 (301)
T 2qnr_A           20 TLMVVGESGLGKSTLINSLFLTDLYPERV   48 (301)
T ss_dssp             EEEEEEETTSSHHHHHHHHHC--------
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence            3589999999999999998876 544443

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=97.17  E-value=0.00045  Score=46.30  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=24.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...+++++|.|++|+||||++..++.....
T Consensus        20 l~~G~~~~i~G~~GsGKTtl~~~~~~~~~~   49 (247)
T 2dr3_A           20 IPERNVVLLSGGPGTGKTIFSQQFLWNGLK   49 (247)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            467899999999999999997766555443

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=97.16  E-value=0.00042  Score=45.24  Aligned_cols=27  Identities=22%  Similarity=0.115  Sum_probs=23.6

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .+++|+|++|+||||++..++..+...
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~   31 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVAAAVRE   31 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhhHhc
Confidence            478999999999999999999887643

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=97.16  E-value=0.00033  Score=45.72  Aligned_cols=24  Identities=29%  Similarity=0.555  Sum_probs=21.2

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ..+|+|+|++||||||+++.+...
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHC
Confidence            467999999999999999988764

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=97.15  E-value=0.0004  Score=46.31  Aligned_cols=26  Identities=19%  Similarity=0.287  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+..|+|.|+.||||||.++.+...+
T Consensus         3 ~~~~I~l~G~~GsGKsT~a~~La~~l   28 (220)
T 1aky_A            3 ESIRMVLIGPPGAGKGTQAPNLQERF   28 (220)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            35679999999999999999988765

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=97.15  E-value=0.00035  Score=46.27  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|+|++||||||+++.+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999887654

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=97.15  E-value=0.00041  Score=46.85  Aligned_cols=27  Identities=22%  Similarity=0.409  Sum_probs=23.7

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..+.+|+|+|++||||||+++.+.+.+
T Consensus        14 ~~~~~i~i~G~~gsGKst~~~~l~~~l   40 (236)
T 1q3t_A           14 MKTIQIAIDGPASSGKSTVAKIIAKDF   40 (236)
T ss_dssp             CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            457899999999999999999988754

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=97.15  E-value=0.00032  Score=45.31  Aligned_cols=24  Identities=29%  Similarity=0.422  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+|+|+|++||||||+.+.+...+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKAL   26 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHc
Confidence            468999999999999999888754

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=97.15  E-value=0.00044  Score=45.42  Aligned_cols=27  Identities=22%  Similarity=0.332  Sum_probs=23.2

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..+..|+|+|+.||||||+++.+...+
T Consensus        18 ~~~~~I~l~G~~GsGKST~a~~La~~l   44 (201)
T 2cdn_A           18 GSHMRVLLLGPPGAGKGTQAVKLAEKL   44 (201)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            345689999999999999999988765

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=97.14  E-value=0.00054  Score=49.05  Aligned_cols=33  Identities=15%  Similarity=0.190  Sum_probs=28.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      ...+.+++++|++|+||||+++.+++.+...++
T Consensus        53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~   85 (341)
T 2p67_A           53 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGL   85 (341)
T ss_dssp             CSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTC
T ss_pred             cCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence            456889999999999999999999988865443

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=97.13  E-value=0.00035  Score=44.56  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=21.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..|+|.|++||||||+++.+...+
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~l   26 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARAL   26 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHh
Confidence            468999999999999999988764

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=97.13  E-value=0.00027  Score=45.47  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=18.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +..|+|.|.+||||||.++.+...+
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~l   29 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHERL   29 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHHS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHhc
Confidence            4689999999999999999987654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=97.12  E-value=0.0004  Score=45.49  Aligned_cols=23  Identities=39%  Similarity=0.564  Sum_probs=21.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +|+|.|++||||||+++.+...+
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~l   26 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAAL   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHhc
Confidence            78999999999999999998865

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=97.12  E-value=0.00041  Score=44.86  Aligned_cols=23  Identities=39%  Similarity=0.667  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|.|..||||||.++.+...+
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~l   24 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEYL   24 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            58999999999999999998866

>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*

Probab=97.11  E-value=0.00034  Score=56.45  Aligned_cols=24  Identities=17%  Similarity=0.293  Sum_probs=21.9

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLV   61 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i   61 (114)
                      ...+++++|+||||+||||+++.+
T Consensus       659 ~~~g~i~~ItGpNGsGKSTlLr~i  682 (934)
T 3thx_A          659 KDKQMFHIITGPNMGGKSTYIRQT  682 (934)
T ss_dssp             TTTBCEEEEECCTTSSHHHHHHHH
T ss_pred             cCCCeEEEEECCCCCCHHHHHHHH
Confidence            456899999999999999999988

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=97.11  E-value=0.0004  Score=47.54  Aligned_cols=25  Identities=28%  Similarity=0.545  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..+++|.|++||||||+++.+...+
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~l   33 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARAL   33 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHh
Confidence            3579999999999999999998765

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=97.10  E-value=0.00041  Score=46.13  Aligned_cols=23  Identities=26%  Similarity=0.494  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      +.+|+|+|++||||||+++.+..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999999876

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=97.10  E-value=0.00041  Score=46.29  Aligned_cols=26  Identities=31%  Similarity=0.348  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...|+|.|++||||||.++.+...+.
T Consensus         5 ~~~I~l~G~~GsGKsT~~~~La~~l~   30 (222)
T 1zak_A            5 PLKVMISGAPASGKGTQCELIKTKYQ   30 (222)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            45799999999999999999887653

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=97.09  E-value=0.00041  Score=46.01  Aligned_cols=23  Identities=22%  Similarity=0.359  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|+|++||||||+++.+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEKY   24 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            48899999999999999887654

>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*

Probab=97.09  E-value=0.00037  Score=56.69  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +++++|+||||+||||++|.+ +++..
T Consensus       789 g~i~~ItGpNgsGKSTlLr~i-Gl~~~  814 (1022)
T 2o8b_B          789 AYCVLVTGPNMGGKSTLMRQA-GLLAV  814 (1022)
T ss_dssp             CCEEEEECCTTSSHHHHHHHH-HHHHH
T ss_pred             CcEEEEECCCCCChHHHHHHH-HHHHH
Confidence            699999999999999999999 77754

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=97.08  E-value=0.00048  Score=43.75  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|.|.+||||||.++.+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~l   24 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRSL   24 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHHh
Confidence            58999999999999999988754

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=97.08  E-value=0.00044  Score=46.36  Aligned_cols=26  Identities=27%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....|+|.|++||||||+++.+...+
T Consensus         6 ~~~~I~l~G~~GsGKsT~a~~La~~l   31 (227)
T 1zd8_A            6 RLLRAVIMGAPGSGKGTVSSRITTHF   31 (227)
T ss_dssp             -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred             cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34689999999999999999888654

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=97.06  E-value=0.00038  Score=50.37  Aligned_cols=28  Identities=21%  Similarity=0.355  Sum_probs=22.9

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...+ ..+|+|+|||||||++..|...+.
T Consensus        21 ~~~g-~~~i~G~NGaGKTTll~ai~~al~   48 (365)
T 3qf7_A           21 FQSG-ITVVEGPNGAGKSSLFEAISFALF   48 (365)
T ss_dssp             CCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             cCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence            3444 788999999999999998886653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=97.05  E-value=0.00054  Score=44.94  Aligned_cols=26  Identities=19%  Similarity=0.327  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....|+|+|++||||||.++.+...+
T Consensus        14 ~~~~I~l~G~~GsGKsT~~~~L~~~~   39 (203)
T 1ukz_A           14 QVSVIFVLGGPGAGKGTQCEKLVKDY   39 (203)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence            34679999999999999999887654

>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}

Probab=97.05  E-value=0.0004  Score=50.37  Aligned_cols=28  Identities=32%  Similarity=0.357  Sum_probs=23.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..++ +.+|+|+||+||||++..+.....
T Consensus        24 ~~~g-~~~i~G~nG~GKttll~ai~~~~~   51 (359)
T 2o5v_A           24 FPEG-VTGIYGENGAGKTNLLEAAYLALT   51 (359)
T ss_dssp             CCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             EcCC-eEEEECCCCCChhHHHHHHHHhcc
Confidence            3455 999999999999999999987653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=97.04  E-value=0.00063  Score=45.15  Aligned_cols=28  Identities=21%  Similarity=0.241  Sum_probs=24.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+..++|.|++|+|||++++.+...+..
T Consensus        51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~   78 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLIHAACARANE   78 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5789999999999999999999887654

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=97.04  E-value=0.00054  Score=43.62  Aligned_cols=29  Identities=17%  Similarity=0.267  Sum_probs=24.7

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .....++|.|++|+|||++++.+...+..
T Consensus        41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~   69 (187)
T 2p65_A           41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ   69 (187)
T ss_dssp             SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred             CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence            44678899999999999999999887744

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=97.02  E-value=0.00083  Score=43.98  Aligned_cols=27  Identities=26%  Similarity=0.257  Sum_probs=24.0

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..++|.|++|+|||++++.+...+...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~~~~~   81 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANELAKR   81 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            789999999999999999999877643

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=97.01  E-value=0.0007  Score=46.60  Aligned_cols=28  Identities=25%  Similarity=0.303  Sum_probs=24.2

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .....++|.|++|+|||++++.+...+.
T Consensus        49 ~~~~~~ll~G~~GtGKT~la~~la~~~~   76 (285)
T 3h4m_A           49 EPPKGILLYGPPGTGKTLLAKAVATETN   76 (285)
T ss_dssp             CCCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred             CCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            4567899999999999999999987763

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=97.01  E-value=0.00061  Score=46.43  Aligned_cols=26  Identities=19%  Similarity=0.194  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....|+|+|++||||||.++.+...+
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~~~   53 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKKSH   53 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            46789999999999999999988654

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=97.01  E-value=0.00064  Score=43.15  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....+|+|++|+|||+++..+.-.+
T Consensus        23 ~g~~~I~G~NGsGKStil~Ai~~~l   47 (149)
T 1f2t_A           23 EGINLIIGQNGSGKSSLLDAILVGL   47 (149)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHH
Confidence            4588999999999999999887554

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=97.00  E-value=0.00046  Score=44.21  Aligned_cols=25  Identities=24%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ++..++++|++|+||||+++.+.+.
T Consensus         3 ~~~ki~ivG~~g~GKStLl~~l~~~   27 (172)
T 2gj8_A            3 HGMKVVIAGRPNAGKSSLLNALAGR   27 (172)
T ss_dssp             -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            4567999999999999999998875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=97.00  E-value=0.00056  Score=46.70  Aligned_cols=26  Identities=27%  Similarity=0.434  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+|+|+|++||||||+++.+...+.
T Consensus        22 ~~iI~I~G~~GSGKST~a~~L~~~lg   47 (252)
T 1uj2_A           22 PFLIGVSGGTASGKSSVCAKIVQLLG   47 (252)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            35799999999999999999888553

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=96.98  E-value=0.0006  Score=51.78  Aligned_cols=29  Identities=24%  Similarity=0.425  Sum_probs=25.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .+..+++.||+|+||||+++.+.+.+...
T Consensus       107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~  135 (543)
T 3m6a_A          107 KGPILCLAGPPGVGKTSLAKSIAKSLGRK  135 (543)
T ss_dssp             CSCEEEEESSSSSSHHHHHHHHHHHHTCE
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence            57899999999999999999999988543

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.96  E-value=0.00027  Score=52.25  Aligned_cols=24  Identities=25%  Similarity=0.317  Sum_probs=21.6

Q ss_pred             EEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          44 VVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ++|+|++|+||||+++.+++...+
T Consensus        34 I~lvG~sGaGKSTLln~L~g~~~~   57 (418)
T 2qag_C           34 LMVVGESGLGKSTLINSLFLTDLY   57 (418)
T ss_dssp             EEEECCTTSSHHHHHHHHTTCCCC
T ss_pred             EEEECCCCCcHHHHHHHHhCCCCC
Confidence            699999999999999999987653

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.96  E-value=0.0005  Score=48.72  Aligned_cols=27  Identities=15%  Similarity=0.309  Sum_probs=22.5

Q ss_pred             EEEEcCCCCchHHHHHHHHH-HhhhhCC
Q psy7658          44 VVISGESGSGKTECTKLVMQ-YLAAVNK   70 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~-~~~~~~g   70 (114)
                      +++.||+|+||||+++.+++ ++.+..|
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g   66 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLESIFGPGVY   66 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHHHHSCTTCC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence            89999999999999999999 4444433

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=96.95  E-value=0.00039  Score=48.87  Aligned_cols=26  Identities=19%  Similarity=0.456  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+|+|+|++||||||+++.+...+.
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~lg   30 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQIFR   30 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHHh
Confidence            45799999999999999999887654

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=96.91  E-value=0.0008  Score=44.56  Aligned_cols=25  Identities=20%  Similarity=0.478  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..+|+|+|.+||||||..+.+...+
T Consensus        12 ~~iIgltG~~GSGKSTva~~L~~~l   36 (192)
T 2grj_A           12 HMVIGVTGKIGTGKSTVCEILKNKY   36 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHhc
Confidence            4679999999999999999988763

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=96.90  E-value=0.00083  Score=48.79  Aligned_cols=30  Identities=27%  Similarity=0.430  Sum_probs=24.6

Q ss_pred             hcCCcE--EEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQV--VVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~--i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...++.  ++|+|++|+||||+.+.+.+.+..
T Consensus        19 i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~~   50 (359)
T 2ga8_A           19 IEDNYRVCVILVGSPGSGKSTIAEELCQIINE   50 (359)
T ss_dssp             TTTCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             hccCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            345556  999999999999999998887643

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.90  E-value=0.00051  Score=48.71  Aligned_cols=26  Identities=31%  Similarity=0.445  Sum_probs=22.2

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++ +.+|+|+||+|||+++..+...+
T Consensus        23 ~~g-~~~i~G~NGsGKS~ll~ai~~ll   48 (322)
T 1e69_A           23 SDR-VTAIVGPNGSGKSNIIDAIKWVF   48 (322)
T ss_dssp             CSS-EEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CCC-cEEEECCCCCcHHHHHHHHHHHh
Confidence            344 99999999999999999988654

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=96.89  E-value=0.00063  Score=43.10  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=20.0

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.++++|++|+||||+++.+.+.
T Consensus         4 ~~v~lvG~~gvGKStL~~~l~~~   26 (165)
T 2wji_A            4 YEIALIGNPNVGKSTIFNALTGE   26 (165)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHCC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            35889999999999999988764

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=96.88  E-value=0.00068  Score=49.83  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=22.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      ...++++.|.|++|+||||+++.++
T Consensus       175 I~~Gei~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          175 VETGSITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             cCCCcEEEEEcCCCCChHHHHHHHH
Confidence            4579999999999999999999654

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=96.88  E-value=0.00088  Score=46.04  Aligned_cols=26  Identities=23%  Similarity=0.480  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...|+++|.+||||||+++.+...+.
T Consensus         4 ~~lIvl~G~pGSGKSTla~~La~~L~   29 (260)
T 3a4m_A            4 IMLIILTGLPGVGKSTFSKNLAKILS   29 (260)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence            45799999999999999999988643

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.87  E-value=0.00086  Score=44.97  Aligned_cols=23  Identities=35%  Similarity=0.442  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|.|++||||||.++.+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~l   24 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDKY   24 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            58899999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.87  E-value=0.00085  Score=44.53  Aligned_cols=23  Identities=17%  Similarity=0.393  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|.|++||||||.++.+...+
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~~   24 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEKY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999988754

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.87  E-value=0.00097  Score=45.11  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=24.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .....+|+|.|++||||+|.++.+...+
T Consensus        26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~   53 (217)
T 3umf_A           26 LAKAKVIFVLGGPGSGKGTQCEKLVQKF   53 (217)
T ss_dssp             TTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999988765

>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*

Probab=96.87  E-value=0.00026  Score=56.50  Aligned_cols=30  Identities=27%  Similarity=0.331  Sum_probs=25.6

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHH-HHHHhh
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKL-VMQYLA   66 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~-i~~~~~   66 (114)
                      .+..|++++|+|+|||||||+++. +.+.+.
T Consensus       519 ~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~  549 (842)
T 2vf7_A          519 RFPLGVMTSVTGVSGSGKSTLVSQALVDALA  549 (842)
T ss_dssp             EEESSSEEEEECCTTSSHHHHCCCCCHHHHH
T ss_pred             EEcCCCEEEEEcCCCcCHHHHHHHHHHHHHH
Confidence            367899999999999999999996 666653

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.87  E-value=0.00095  Score=44.49  Aligned_cols=25  Identities=20%  Similarity=0.413  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +..|+|.|+.||||||.++.+...+
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~~l   29 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKKEY   29 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHh
Confidence            4578999999999999999988765

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.86  E-value=0.0011  Score=44.98  Aligned_cols=27  Identities=26%  Similarity=0.240  Sum_probs=23.2

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .....++|.||+|+|||++++.+...+
T Consensus        37 ~~~~~vll~G~~GtGKT~la~~la~~~   63 (262)
T 2qz4_A           37 KVPKGALLLGPPGCGKTLLAKAVATEA   63 (262)
T ss_dssp             CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence            345678999999999999999998865

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=96.85  E-value=0.0006  Score=52.34  Aligned_cols=31  Identities=23%  Similarity=0.413  Sum_probs=27.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ...++.++|.||+|+||||+++.+.+.+...
T Consensus        57 i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~   87 (604)
T 3k1j_A           57 ANQKRHVLLIGEPGTGKSMLGQAMAELLPTE   87 (604)
T ss_dssp             HHTTCCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred             ccCCCEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence            5678999999999999999999999988644

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.85  E-value=0.001  Score=46.05  Aligned_cols=27  Identities=22%  Similarity=0.293  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ....++|.||+|+|||++++.+...+.
T Consensus        53 ~~~~vll~Gp~GtGKT~la~~la~~~~   79 (297)
T 3b9p_A           53 PAKGLLLFGPPGNGKTLLARAVATECS   79 (297)
T ss_dssp             CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred             CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999988763

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=96.82  E-value=0.00094  Score=46.40  Aligned_cols=27  Identities=30%  Similarity=0.329  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...+++.||+|+|||++++.+...+..
T Consensus        47 ~~~~ll~G~~GtGKt~la~~la~~~~~   73 (311)
T 4fcw_A           47 IGSFLFLGPTGVGKTELAKTLAATLFD   73 (311)
T ss_dssp             SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred             ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence            357999999999999999999998743

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.81  E-value=0.00096  Score=48.95  Aligned_cols=27  Identities=19%  Similarity=0.215  Sum_probs=24.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ...+..++|+|++|+||||+++.+.+.
T Consensus        17 v~~g~~vgiVG~pnaGKSTL~n~Ltg~   43 (392)
T 1ni3_A           17 PGNNLKTGIVGMPNVGKSTFFRAITKS   43 (392)
T ss_dssp             SSSCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            456889999999999999999999983

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=96.80  E-value=0.00055  Score=44.15  Aligned_cols=22  Identities=36%  Similarity=0.569  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++|+|++|+||||+++.+.+.
T Consensus         4 kv~ivG~~gvGKStLl~~l~~~   25 (184)
T 2zej_A            4 KLMIVGNTGSGKTTLLQQLMKT   25 (184)
T ss_dssp             EEEEESCTTSSHHHHHHHHTCC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999988763

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=96.80  E-value=0.0013  Score=47.74  Aligned_cols=33  Identities=21%  Similarity=0.228  Sum_probs=27.9

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      ...++++.|.|++|+||||++..++.......+
T Consensus        58 i~~G~i~~I~GppGsGKSTLal~la~~~~~~gg   90 (356)
T 3hr8_A           58 YPRGRIVEIFGQESSGKTTLALHAIAEAQKMGG   90 (356)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence            356899999999999999999999888765544

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=96.79  E-value=0.0012  Score=48.89  Aligned_cols=32  Identities=22%  Similarity=0.349  Sum_probs=28.0

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      .+++++++|++|+||||++..++.++...++.
T Consensus        97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~  128 (425)
T 2ffh_A           97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRR  128 (425)
T ss_dssp             SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence            57889999999999999999999999876544

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=96.79  E-value=0.0012  Score=46.55  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=27.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +++++++|++|+||||++..++..+...++.
T Consensus        98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~  128 (297)
T 1j8m_F           98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFK  128 (297)
T ss_dssp             SEEEEEECSSCSSTTHHHHHHHHHHHHTTCC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence            7899999999999999999999998765443

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=96.79  E-value=0.001  Score=47.96  Aligned_cols=25  Identities=36%  Similarity=0.452  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+|+|+|++||||||+++.+...+.
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~l~   32 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKKFN   32 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCcCcHHHHHHHHHHHcC
Confidence            4799999999999999999888764

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.77  E-value=0.0014  Score=44.17  Aligned_cols=26  Identities=19%  Similarity=0.277  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....|+|.|+.||||||.++.+...+
T Consensus        15 ~~~~I~l~G~~GsGKsT~a~~La~~l   40 (233)
T 1ak2_A           15 KGVRAVLLGPPGAGKGTQAPKLAKNF   40 (233)
T ss_dssp             CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999988765

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.77  E-value=0.0012  Score=44.23  Aligned_cols=23  Identities=26%  Similarity=0.393  Sum_probs=20.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +|++.|++||||+|.++.+...+
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~~   24 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKEK   24 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            57899999999999999988776

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=96.77  E-value=0.00095  Score=42.77  Aligned_cols=23  Identities=13%  Similarity=0.189  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.++++|++|+||||+++.+.+.
T Consensus         8 ~~i~lvG~~gvGKStL~~~l~~~   30 (188)
T 2wjg_A            8 YEIALIGNPNVGKSTIFNALTGE   30 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35889999999999999988863

>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}

Probab=96.75  E-value=0.0016  Score=49.60  Aligned_cols=48  Identities=17%  Similarity=0.290  Sum_probs=32.2

Q ss_pred             CCCCCeeee---ehhhhhhhc--hhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          19 GTLSPHLFA---IGSAAYSAL--ATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        19 ~~~~phiy~---~~~~~~~~l--~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +..+|+-|.   ++......+  ..+.+..|+++|.+||||||+++.+...+.
T Consensus       345 g~~~p~~~~r~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~  397 (546)
T 2gks_A          345 GRKLPEWFTRPEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQ  397 (546)
T ss_dssp             TCCCCTTTSCHHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCCCCccccchhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhh
Confidence            344566665   332222223  123467899999999999999999888664

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.75  E-value=0.0011  Score=46.94  Aligned_cols=29  Identities=31%  Similarity=0.439  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .+..++|.|++|+|||++++.+.+.+...
T Consensus        44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~   72 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKK   72 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            46789999999999999999999877554

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=96.74  E-value=0.0013  Score=43.70  Aligned_cols=27  Identities=26%  Similarity=0.364  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ..+.+|+|++|+||||++..|.-.+..
T Consensus        23 ~~~~~I~G~NgsGKStil~ai~~~l~g   49 (203)
T 3qks_A           23 EGINLIIGQNGSGKSSLLDAILVGLYW   49 (203)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred             CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            468899999999999999988766553

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.74  E-value=0.0014  Score=42.98  Aligned_cols=26  Identities=31%  Similarity=0.496  Sum_probs=22.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ..++|.|++|+|||++++.+...+..
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~~~~   71 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKGLNC   71 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHhcC
Confidence            48999999999999999999887643

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=96.73  E-value=0.0012  Score=49.02  Aligned_cols=32  Identities=19%  Similarity=0.258  Sum_probs=27.2

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      .+.+++++|++|+||||++..++.++...+++
T Consensus        96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~k  127 (433)
T 3kl4_A           96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYK  127 (433)
T ss_dssp             SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCe
Confidence            36789999999999999999999988765443

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=96.72  E-value=0.0012  Score=46.46  Aligned_cols=28  Identities=21%  Similarity=0.210  Sum_probs=24.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ...++|.||+|+|||++++.+...+...
T Consensus        37 ~~~lll~G~~GtGKT~la~~i~~~~~~~   64 (324)
T 1l8q_A           37 YNPIFIYGSVGTGKTHLLQAAGNEAKKR   64 (324)
T ss_dssp             CSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence            4689999999999999999999887544

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.70  E-value=0.0013  Score=45.92  Aligned_cols=23  Identities=30%  Similarity=0.420  Sum_probs=20.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      ..+|+|+|++||||||+++.+..
T Consensus        75 ~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           75 LYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHH
Confidence            45799999999999999998874

>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A

Probab=96.69  E-value=0.00037  Score=56.34  Aligned_cols=26  Identities=31%  Similarity=0.427  Sum_probs=23.3

Q ss_pred             hhcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          37 ATSGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        37 ~~~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      .+..|++++|+|+|||||||+++.++
T Consensus       646 ~I~~Geiv~I~G~nGSGKSTLl~~ll  671 (972)
T 2r6f_A          646 KIPLGTFVAVTGVSGSGKSTLVNEVL  671 (972)
T ss_dssp             EEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred             EEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence            36789999999999999999999854

>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*

Probab=96.68  E-value=0.0018  Score=43.48  Aligned_cols=28  Identities=21%  Similarity=0.386  Sum_probs=24.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+..|++.|+.||||||.++.+...+..
T Consensus         5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~   32 (213)
T 4edh_A            5 TGLFVTLEGPEGAGKSTNRDYLAERLRE   32 (213)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999888753

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=96.66  E-value=0.00044  Score=51.11  Aligned_cols=30  Identities=17%  Similarity=0.049  Sum_probs=26.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +..+.++.++|+|++|+||||+++.+.+..
T Consensus       152 lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~  181 (416)
T 1udx_A          152 LELMLIADVGLVGYPNAGKSSLLAAMTRAH  181 (416)
T ss_dssp             EEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred             eEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence            456778899999999999999999988763

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=96.66  E-value=0.0011  Score=47.70  Aligned_cols=27  Identities=19%  Similarity=0.402  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+..|+|+||+|+|||++...++..+.
T Consensus        39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~   65 (339)
T 3a8t_A           39 KEKLLVLMGATGTGKSRLSIDLAAHFP   65 (339)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHCC
Confidence            346899999999999999999988774

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.64  E-value=0.0013  Score=48.41  Aligned_cols=27  Identities=26%  Similarity=0.316  Sum_probs=23.1

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....+|+++|++||||||+++.+...+
T Consensus       256 ~~~~lIil~G~pGSGKSTla~~L~~~~  282 (416)
T 3zvl_A          256 PNPEVVVAVGFPGAGKSTFIQEHLVSA  282 (416)
T ss_dssp             SSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence            346889999999999999999887654

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.64  E-value=0.0017  Score=40.67  Aligned_cols=27  Identities=19%  Similarity=0.373  Sum_probs=23.2

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..+..+.|.||+|+|||++++.+....
T Consensus        22 ~~~~~vll~G~~GtGKt~lA~~i~~~~   48 (145)
T 3n70_A           22 ETDIAVWLYGAPGTGRMTGARYLHQFG   48 (145)
T ss_dssp             TCCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHHhC
Confidence            346779999999999999999988764

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=96.64  E-value=0.0014  Score=45.53  Aligned_cols=23  Identities=22%  Similarity=0.449  Sum_probs=20.6

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ..|+|+|++||||||+++.+...
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~~   25 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIAK   25 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            47899999999999999998874

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=96.64  E-value=0.0018  Score=46.07  Aligned_cols=28  Identities=21%  Similarity=0.410  Sum_probs=24.3

Q ss_pred             CCc--EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQ--VVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~--~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+.  .++|.|++|+|||++++.+.+.+..
T Consensus        41 ~~~~~~~li~G~~G~GKTtl~~~l~~~~~~   70 (389)
T 1fnn_A           41 GHHYPRATLLGRPGTGKTVTLRKLWELYKD   70 (389)
T ss_dssp             TSSCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHhh
Confidence            346  8999999999999999999988754

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=96.63  E-value=0.0016  Score=43.96  Aligned_cols=26  Identities=38%  Similarity=0.507  Sum_probs=21.2

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ..++.++++|++|||||+.+..++-.
T Consensus        74 ~~g~~~~i~g~TGsGKTt~~~~~~~~   99 (235)
T 3llm_A           74 SQNSVVIIRGATGCGKTTQVPQFILD   99 (235)
T ss_dssp             HHCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             hcCCEEEEEeCCCCCcHHhHHHHHhc
Confidence            45789999999999999987765443

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=96.62  E-value=0.0015  Score=46.76  Aligned_cols=25  Identities=20%  Similarity=0.392  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..++|+|++|+||||+.+.+...+.
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~l~   30 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADALP   30 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHcC
Confidence            4789999999999999999988763

>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*

Probab=96.60  E-value=0.0023  Score=43.73  Aligned_cols=30  Identities=27%  Similarity=0.482  Sum_probs=25.6

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..+..|++.|++||||||.++.+...+...
T Consensus        25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~   54 (236)
T 3lv8_A           25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQN   54 (236)
T ss_dssp             -CCCEEEEEESTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            347899999999999999999998887643

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.60  E-value=0.0014  Score=44.16  Aligned_cols=25  Identities=20%  Similarity=0.417  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      -.|+|+|++|+||||+++.+++...
T Consensus        30 ~~i~lvG~~g~GKStlin~l~g~~~   54 (239)
T 3lxx_A           30 LRIVLVGKTGAGKSATGNSILGRKV   54 (239)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHTSCC
T ss_pred             eEEEEECCCCCCHHHHHHHHcCCCc
Confidence            4589999999999999999887544

>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}

Probab=96.60  E-value=0.0021  Score=48.48  Aligned_cols=25  Identities=28%  Similarity=0.372  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .-++|.||+|+|||++++.+.+.+.
T Consensus        65 ~GvLL~GppGtGKTtLaraIa~~~~   89 (499)
T 2dhr_A           65 KGVLLVGPPGVGKTHLARAVAGEAR   89 (499)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHHhC
Confidence            4489999999999999999998763

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=96.59  E-value=0.0016  Score=40.60  Aligned_cols=22  Identities=18%  Similarity=0.268  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|++|+||||+++.+.+-
T Consensus         7 ~i~v~G~~~~GKssl~~~l~~~   28 (168)
T 1z2a_A            7 KMVVVGNGAVGKSSMIQRYCKG   28 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999988764

>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}

Probab=96.59  E-value=0.0021  Score=43.59  Aligned_cols=32  Identities=31%  Similarity=0.558  Sum_probs=26.0

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +....+..|++.|..||||||.++.+...+..
T Consensus        16 ~~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~   47 (223)
T 3ld9_A           16 TQGPGSMFITFEGIDGSGKTTQSHLLAEYLSE   47 (223)
T ss_dssp             ---CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            34456889999999999999999999888765

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=96.59  E-value=0.00083  Score=45.87  Aligned_cols=26  Identities=31%  Similarity=0.341  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...++|.||+|+|||++++.+...+.
T Consensus        44 ~~~vll~G~~GtGKT~la~~la~~~~   69 (268)
T 2r62_A           44 PKGVLLVGPPGTGKTLLAKAVAGEAH   69 (268)
T ss_dssp             CSCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhC
Confidence            45588999999999999999988653

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=96.59  E-value=0.0016  Score=46.61  Aligned_cols=26  Identities=27%  Similarity=0.487  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...++|+||+|+|||++...++..+.
T Consensus         3 ~~~i~i~GptgsGKt~la~~La~~~~   28 (322)
T 3exa_A            3 EKLVAIVGPTAVGKTKTSVMLAKRLN   28 (322)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHTTT
T ss_pred             CcEEEEECCCcCCHHHHHHHHHHhCc
Confidence            35789999999999999999887664

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=96.58  E-value=0.0021  Score=44.64  Aligned_cols=28  Identities=21%  Similarity=0.305  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+..++|.||+|+|||++++.+...+..
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~l~~   93 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGLLHR   93 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            3557999999999999999998887754

>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}

Probab=96.58  E-value=0.0017  Score=44.16  Aligned_cols=30  Identities=20%  Similarity=0.324  Sum_probs=23.0

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..+..|++.|+.||||||.++.+...+...
T Consensus        23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~   52 (227)
T 3v9p_A           23 ARGKFITFEGIDGAGKTTHLQWFCDRLQER   52 (227)
T ss_dssp             CCCCEEEEECCC---CHHHHHHHHHHHHHH
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            357899999999999999999998887543

>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*

Probab=96.57  E-value=0.0026  Score=42.80  Aligned_cols=28  Identities=32%  Similarity=0.586  Sum_probs=24.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +..|++.|+.||||||.++.+...+...
T Consensus         3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~   30 (213)
T 4tmk_A            3 SKYIVIEGLEGAGKTTARNVVVETLEQL   30 (213)
T ss_dssp             CCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            6789999999999999999999888654

>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B

Probab=96.56  E-value=0.002  Score=46.00  Aligned_cols=26  Identities=27%  Similarity=0.438  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...+.+|+||||+|||+++..|.-.+
T Consensus        22 ~~~~~~i~G~NGsGKS~lleAi~~~l   47 (339)
T 3qkt_A           22 KEGINLIIGQNGSGKSSLLDAILVGL   47 (339)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHh
Confidence            35688999999999999999875433

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=96.54  E-value=0.0019  Score=46.14  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...++|+||+|+|||++...++..+.
T Consensus        10 ~~~i~i~GptgsGKt~la~~La~~~~   35 (316)
T 3foz_A           10 PKAIFLMGPTASGKTALAIELRKILP   35 (316)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred             CcEEEEECCCccCHHHHHHHHHHhCC
Confidence            46789999999999999999988764

>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A

Probab=96.54  E-value=0.0026  Score=46.05  Aligned_cols=30  Identities=20%  Similarity=0.199  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~~   69 (114)
                      .+..++|+|++|+|||++++.++..+...+
T Consensus        34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~   63 (392)
T 4ag6_A           34 TNSNWTILAKPGAGKSFTAKMLLLREYMQG   63 (392)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHHTTT
T ss_pred             ccCceEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence            567789999999999999999888775443

>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1

Probab=96.53  E-value=0.002  Score=43.52  Aligned_cols=26  Identities=23%  Similarity=0.354  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +..|++.|..||||||+++.+...+.
T Consensus         2 ~~~i~~~G~~g~GKtt~~~~l~~~l~   27 (241)
T 2ocp_A            2 PRRLSIEGNIAVGKSTFVKLLTKTYP   27 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence            46799999999999999999998873

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=96.53  E-value=0.002  Score=42.63  Aligned_cols=24  Identities=25%  Similarity=0.378  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+++|+|++||||||+++.+...+
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~~   27 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASEL   27 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHhc
Confidence            578999999999999999888764

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=96.53  E-value=0.0019  Score=40.07  Aligned_cols=22  Identities=27%  Similarity=0.385  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|+.|+|||++++.+.+.
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (161)
T 2dyk_A            3 KVVIVGRPNVGKSSLFNRLLKK   24 (161)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=96.52  E-value=0.0019  Score=40.03  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|..|+||||+++.+.+.
T Consensus         5 ~i~v~G~~~~GKssl~~~l~~~   26 (166)
T 2ce2_X            5 KLVVVGAGGVGKSALTIQLIQN   26 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4889999999999999987754

>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}

Probab=96.52  E-value=0.0018  Score=52.16  Aligned_cols=24  Identities=29%  Similarity=0.397  Sum_probs=20.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHH
Q psy7658          36 LATSGNQVVVISGESGSGKTECTK   59 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~   59 (114)
                      +.+..+++++|+|+|||||||++.
T Consensus       605 l~I~~Geiv~I~G~SGSGKSTLl~  628 (916)
T 3pih_A          605 VEIPLGVFVCVTGVSGSGKSSLVM  628 (916)
T ss_dssp             EEEESSSEEEEECSTTSSHHHHHH
T ss_pred             eEEcCCcEEEEEccCCCChhhhHH
Confidence            336789999999999999999973

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.52  E-value=0.0029  Score=41.12  Aligned_cols=24  Identities=29%  Similarity=0.447  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..++|.|+.|+|||++++.+...+
T Consensus        39 ~~~ll~G~~G~GKT~l~~~l~~~~   62 (226)
T 2chg_A           39 PHLLFSGPPGTGKTATAIALARDL   62 (226)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHH
Confidence            359999999999999999988765

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.0021  Score=41.34  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.++++|++|+|||++++.+.+.
T Consensus        49 ~~i~vvG~~g~GKSsll~~l~~~   71 (193)
T 2ged_A           49 PSIIIAGPQNSGKTSLLTLLTTD   71 (193)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            46899999999999999988764

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=96.50  E-value=0.002  Score=39.99  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|++|+|||++++.+.+
T Consensus         5 ~i~v~G~~~~GKSsli~~l~~   25 (167)
T 1kao_A            5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            488999999999999987765

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=96.48  E-value=0.0021  Score=39.93  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|..|+|||++++.+.+-
T Consensus         6 ~i~v~G~~~~GKssl~~~l~~~   27 (168)
T 1u8z_A            6 KVIMVGSGGVGKSALTLQFMYD   27 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999987753

>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*

Probab=96.47  E-value=0.0028  Score=42.80  Aligned_cols=28  Identities=21%  Similarity=0.413  Sum_probs=25.2

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+..|++.|+.|+||||.++.+...+..
T Consensus         4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~   31 (216)
T 3tmk_A            4 RGKLILIEGLDRTGKTTQCNILYKKLQP   31 (216)
T ss_dssp             CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence            4789999999999999999999998864

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.47  E-value=0.0028  Score=46.99  Aligned_cols=29  Identities=28%  Similarity=0.311  Sum_probs=24.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .....-+++.||+|+|||.+++.+++.+.
T Consensus       203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~  231 (428)
T 4b4t_K          203 IDPPRGVLLYGPPGTGKTMLVKAVANSTK  231 (428)
T ss_dssp             CCCCCEEEEESCTTTTHHHHHHHHHHHHT
T ss_pred             CCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence            34566799999999999999999998763

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=96.47  E-value=0.0022  Score=40.10  Aligned_cols=23  Identities=22%  Similarity=0.312  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++++|+.|+|||++++.+.+-.
T Consensus         8 ~i~v~G~~~~GKSsli~~l~~~~   30 (170)
T 1z0j_A            8 KVCLLGDTGVGKSSIMWRFVEDS   30 (170)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHSC
T ss_pred             EEEEECcCCCCHHHHHHHHHcCC
Confidence            48899999999999999877643

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.47  E-value=0.0022  Score=40.00  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|+.|+|||++++.+.+-
T Consensus         5 ~i~v~G~~~~GKssli~~l~~~   26 (170)
T 1ek0_A            5 KLVLLGEAAVGKSSIVLRFVSN   26 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999887754

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=96.46  E-value=0.0027  Score=44.35  Aligned_cols=26  Identities=27%  Similarity=0.336  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....+++.||+|+|||++++.++..+
T Consensus        35 ~p~~lLl~GppGtGKT~la~aiA~~l   60 (293)
T 3t15_A           35 VPLILGIWGGKGQGKSFQCELVFRKM   60 (293)
T ss_dssp             CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            34678889999999999999999876

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=96.45  E-value=0.0022  Score=40.53  Aligned_cols=23  Identities=35%  Similarity=0.427  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.++++|++|+|||++++.+.+.
T Consensus         9 ~~i~v~G~~~~GKSsli~~l~~~   31 (182)
T 1ky3_A            9 LKVIILGDSGVGKTSLMHRYVND   31 (182)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999887763

>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*

Probab=96.45  E-value=0.0028  Score=48.54  Aligned_cols=28  Identities=18%  Similarity=0.253  Sum_probs=24.1

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+.+|.|+|.+||||||+++.+...+..
T Consensus       395 ~~~~I~l~GlsGSGKSTiA~~La~~L~~  422 (573)
T 1m8p_A          395 QGFTIFLTGYMNSGKDAIARALQVTLNQ  422 (573)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             cceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence            4568999999999999999999887653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=96.45  E-value=0.0022  Score=40.11  Aligned_cols=21  Identities=24%  Similarity=0.419  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|++|+|||++++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (170)
T 1g16_A            5 KILLIGDSGVGKSCLLVRFVE   25 (170)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            478999999999999998775

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=96.45  E-value=0.0025  Score=45.28  Aligned_cols=26  Identities=35%  Similarity=0.526  Sum_probs=23.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +..++|.||+|+|||++++.+...+.
T Consensus        70 ~~~vLl~GppGtGKT~la~~la~~l~   95 (368)
T 3uk6_A           70 GRAVLIAGQPGTGKTAIAMGMAQALG   95 (368)
T ss_dssp             TCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHhc
Confidence            46899999999999999999998875

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=96.45  E-value=0.0025  Score=44.01  Aligned_cols=26  Identities=23%  Similarity=0.429  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....+++.||+|+|||++++.+...+
T Consensus        49 ~~~~vll~G~~GtGKT~la~~la~~l   74 (310)
T 1ofh_A           49 TPKNILMIGPTGVGKTEIARRLAKLA   74 (310)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHh
Confidence            35679999999999999999998876

>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...

Probab=96.45  E-value=0.0033  Score=45.25  Aligned_cols=30  Identities=27%  Similarity=0.300  Sum_probs=25.1

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..++++.|.|++|+||||++..++......
T Consensus        59 ~~G~iv~I~G~pGsGKTtLal~la~~~~~~   88 (349)
T 2zr9_A           59 PRGRVIEIYGPESSGKTTVALHAVANAQAA   88 (349)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             cCCeEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            468999999999999999988877665543

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=96.44  E-value=0.0021  Score=43.23  Aligned_cols=27  Identities=33%  Similarity=0.341  Sum_probs=22.3

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..+..++|+|++|+|||+++..++...
T Consensus        32 ~~g~~ilI~GpsGsGKStLA~~La~~g   58 (205)
T 2qmh_A           32 IYGLGVLITGDSGVGKSETALELVQRG   58 (205)
T ss_dssp             ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred             ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence            357889999999999999988776643

>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A

Probab=96.44  E-value=0.0028  Score=46.82  Aligned_cols=30  Identities=23%  Similarity=0.158  Sum_probs=27.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ..+||.++|.|++|+|||++++.+.+....
T Consensus       171 i~rGQr~~IvG~sG~GKTtLl~~Iar~i~~  200 (422)
T 3ice_A          171 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAY  200 (422)
T ss_dssp             CBTTCEEEEECCSSSSHHHHHHHHHHHHHH
T ss_pred             ecCCcEEEEecCCCCChhHHHHHHHHHHhh
Confidence            567999999999999999999999887754

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=96.44  E-value=0.0023  Score=40.05  Aligned_cols=22  Identities=32%  Similarity=0.280  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|++|+|||++++.+.+-
T Consensus         8 ~i~v~G~~~~GKssli~~l~~~   29 (170)
T 1z08_A            8 KVVLLGEGCVGKTSLVLRYCEN   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4789999999999999887754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=96.43  E-value=0.0024  Score=39.81  Aligned_cols=21  Identities=33%  Similarity=0.488  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|.+|+|||++++.+.+
T Consensus         5 ki~v~G~~~~GKssli~~l~~   25 (167)
T 1c1y_A            5 KLVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999998775

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=96.43  E-value=0.0023  Score=40.38  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|++|+|||++++.+.+
T Consensus         9 ~i~v~G~~~~GKSsli~~l~~   29 (177)
T 1wms_A            9 KVILLGDGGVGKSSLMNRYVT   29 (177)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999998765

>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*

Probab=96.42  E-value=0.0034  Score=47.13  Aligned_cols=25  Identities=24%  Similarity=0.355  Sum_probs=22.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++|.||+|+|||++++.+.+..
T Consensus        49 p~gvLL~GppGtGKT~Laraia~~~   73 (476)
T 2ce7_A           49 PKGILLVGPPGTGKTLLARAVAGEA   73 (476)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHc
Confidence            4569999999999999999998865

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=96.42  E-value=0.0023  Score=40.41  Aligned_cols=22  Identities=32%  Similarity=0.446  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|..|+|||++++.+.+-
T Consensus        11 ~i~v~G~~~~GKssli~~l~~~   32 (181)
T 2fn4_A           11 KLVVVGGGGVGKSALTIQFIQS   32 (181)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999987764

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=96.41  E-value=0.0021  Score=40.17  Aligned_cols=21  Identities=24%  Similarity=0.371  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|..|+|||++++.+.+
T Consensus         5 ~i~v~G~~~~GKssli~~l~~   25 (172)
T 2erx_A            5 RVAVFGAGGVGKSSLVLRFVK   25 (172)
T ss_dssp             EEEEECCTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999998775

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=96.41  E-value=0.002  Score=45.25  Aligned_cols=25  Identities=16%  Similarity=0.231  Sum_probs=21.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++|+|++|+||||+++.+++.-
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~   32 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQK   32 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            3579999999999999999998764

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.0033  Score=46.72  Aligned_cols=29  Identities=28%  Similarity=0.351  Sum_probs=24.9

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .....-+++.||+|+|||.+++.++..+.
T Consensus       212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~  240 (437)
T 4b4t_L          212 IKPPKGVLLYGPPGTGKTLLAKAVAATIG  240 (437)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence            44567899999999999999999998763

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.39  E-value=0.0029  Score=40.95  Aligned_cols=31  Identities=23%  Similarity=0.329  Sum_probs=21.0

Q ss_pred             hhchhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          34 SALATSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        34 ~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      +.|.....-.|+++|..|+|||++++.+.+-
T Consensus        21 ~~~~~~~~~ki~v~G~~~vGKSsli~~l~~~   51 (196)
T 2atv_A           21 QSMAKSAEVKLAIFGRAGVGKSALVVRFLTK   51 (196)
T ss_dssp             ------CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred             hccCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence            3444444556899999999999999887753

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.39  E-value=0.0034  Score=46.65  Aligned_cols=29  Identities=17%  Similarity=0.232  Sum_probs=24.7

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .....-+.+.||+|+|||.+++.+++.+.
T Consensus       212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~  240 (434)
T 4b4t_M          212 IRAPKGALMYGPPGTGKTLLARACAAQTN  240 (434)
T ss_dssp             CCCCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCeeEEECcCCCCHHHHHHHHHHHhC
Confidence            34567799999999999999999998763

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=96.39  E-value=0.0023  Score=45.35  Aligned_cols=29  Identities=31%  Similarity=0.510  Sum_probs=24.8

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .....++|.||+|+|||++++.+...+..
T Consensus        42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~   70 (387)
T 2v1u_A           42 EKPSNALLYGLTGTGKTAVARLVLRRLEA   70 (387)
T ss_dssp             CCCCCEEECBCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34678999999999999999999887743

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=96.39  E-value=0.0022  Score=41.16  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.|+++|..|+||||+++.+.+-
T Consensus        22 ~ki~vvG~~~~GKSsli~~l~~~   44 (190)
T 3con_A           22 YKLVVVGAGGVGKSALTIQLIQN   44 (190)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHHcC
Confidence            35889999999999999988754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=96.37  E-value=0.0021  Score=40.47  Aligned_cols=22  Identities=36%  Similarity=0.498  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|++|+|||++++.+.+.
T Consensus         6 ki~i~G~~~vGKSsl~~~l~~~   27 (175)
T 2nzj_A            6 RVVLLGDPGVGKTSLASLFAGK   27 (175)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCccHHHHHHHHhcC
Confidence            4889999999999999987653

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=96.36  E-value=0.0028  Score=39.53  Aligned_cols=21  Identities=29%  Similarity=0.398  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|..|+|||++++.+.+
T Consensus         8 ~i~v~G~~~~GKssli~~l~~   28 (170)
T 1r2q_A            8 KLVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999988775

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=96.36  E-value=0.0028  Score=46.75  Aligned_cols=25  Identities=32%  Similarity=0.571  Sum_probs=21.9

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+|+|+||+|+|||+++..++..+.
T Consensus         3 ~~i~i~GptgsGKttla~~La~~~~   27 (409)
T 3eph_A            3 KVIVIAGTTGVGKSQLSIQLAQKFN   27 (409)
T ss_dssp             EEEEEEECSSSSHHHHHHHHHHHHT
T ss_pred             cEEEEECcchhhHHHHHHHHHHHCC
Confidence            4789999999999999999887764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=96.35  E-value=0.0021  Score=41.13  Aligned_cols=23  Identities=22%  Similarity=0.289  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.++++|.+|+||||+++.+++.
T Consensus        24 ~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 3pqc_A           24 GEVAFVGRSNVGKSSLLNALFNR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            46899999999999999988765

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=96.35  E-value=0.0029  Score=45.31  Aligned_cols=26  Identities=31%  Similarity=0.549  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....+++.||+|+|||++++.+...+
T Consensus        50 ~~~~vll~GppGtGKT~la~~ia~~~   75 (363)
T 3hws_A           50 GKSNILLIGPTGSGKTLLAETLARLL   75 (363)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence            35679999999999999999998865

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=96.34  E-value=0.0032  Score=41.52  Aligned_cols=26  Identities=27%  Similarity=0.414  Sum_probs=21.7

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .-.+..+++.|+||+||||++..++.
T Consensus        13 ~v~G~gvli~G~SGaGKStlal~L~~   38 (181)
T 3tqf_A           13 VIDKMGVLITGEANIGKSELSLALID   38 (181)
T ss_dssp             EETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred             EECCEEEEEEcCCCCCHHHHHHHHHH
Confidence            34578899999999999999876665

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=96.33  E-value=0.0029  Score=40.36  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+++|..|+|||++++.+.+
T Consensus        13 ki~v~G~~~~GKSsli~~l~~   33 (195)
T 3bc1_A           13 KFLALGDSGVGKTSVLYQYTD   33 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            588999999999999998775

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=96.32  E-value=0.0029  Score=40.74  Aligned_cols=22  Identities=41%  Similarity=0.486  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+++|.+|+|||++++.+.+-
T Consensus        27 ki~v~G~~~~GKSsLi~~l~~~   48 (193)
T 2oil_A           27 KVVLIGESGVGKTNLLSRFTRN   48 (193)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4889999999999999987763

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=96.32  E-value=0.0029  Score=40.26  Aligned_cols=22  Identities=32%  Similarity=0.493  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|++|+||||+++.+.+-
T Consensus         6 ki~v~G~~~~GKSsli~~l~~~   27 (189)
T 4dsu_A            6 KLVVVGADGVGKSALTIQLIQN   27 (189)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999988753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.30  E-value=0.0034  Score=43.01  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....++|.||+|+|||++++.+...+
T Consensus        63 ~~~~vLl~G~~GtGKT~la~~ia~~~   88 (272)
T 1d2n_A           63 PLVSVLLEGPPHSGKTALAAKIAEES   88 (272)
T ss_dssp             SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence            45679999999999999999988864

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=96.30  E-value=0.0029  Score=46.76  Aligned_cols=28  Identities=25%  Similarity=0.331  Sum_probs=24.5

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ...++|.|++|+|||++++.+...+...
T Consensus       130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~  157 (440)
T 2z4s_A          130 YNPLFIYGGVGLGKTHLLQSIGNYVVQN  157 (440)
T ss_dssp             SCCEEEECSSSSSHHHHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            4679999999999999999999887544

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.30  E-value=0.0039  Score=44.20  Aligned_cols=25  Identities=24%  Similarity=0.303  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++|.||+|+|||++++.++..+
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~~   69 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATEA   69 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCccHHHHHHHHHHHc
Confidence            4679999999999999999999876

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=96.29  E-value=0.0038  Score=40.13  Aligned_cols=25  Identities=20%  Similarity=0.391  Sum_probs=21.1

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ..-.++++|.+|+||||+++.+++-
T Consensus        22 ~~~~i~v~G~~~~GKSsli~~l~~~   46 (195)
T 1svi_A           22 GLPEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCC
Confidence            3466899999999999999988753

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.0037  Score=46.05  Aligned_cols=29  Identities=24%  Similarity=0.335  Sum_probs=24.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .....-+.+.||+|+|||.+++.+++.+.
T Consensus       179 i~~prGvLL~GPPGTGKTllAkAiA~e~~  207 (405)
T 4b4t_J          179 IAQPKGVILYGPPGTGKTLLARAVAHHTD  207 (405)
T ss_dssp             CCCCCCEEEESCSSSSHHHHHHHHHHHHT
T ss_pred             CCCCCceEEeCCCCCCHHHHHHHHHHhhC
Confidence            34456799999999999999999998764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=96.28  E-value=0.0033  Score=39.18  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=18.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|.+|+|||++++.+.+-
T Consensus         2 ki~~~G~~~~GKssl~~~l~~~   23 (164)
T 1r8s_A            2 RILMVGLDAAGKTTILYKLKLG   23 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            3789999999999999987653

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=96.28  E-value=0.0031  Score=39.74  Aligned_cols=21  Identities=33%  Similarity=0.370  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|+.|+|||++++.+++
T Consensus        16 ~i~v~G~~~~GKssli~~l~~   36 (179)
T 2y8e_A           16 KLVFLGEQSVGKTSLITRFMY   36 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            488999999999999998774

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=96.28  E-value=0.0032  Score=39.39  Aligned_cols=22  Identities=27%  Similarity=0.314  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.++++|.+|+|||++++.+.+
T Consensus         8 ~~i~v~G~~~~GKssl~~~l~~   29 (171)
T 1upt_A            8 MRILILGLDGAGKTTILYRLQV   29 (171)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4588999999999999998764

>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A

Probab=96.28  E-value=0.0052  Score=45.53  Aligned_cols=33  Identities=15%  Similarity=0.272  Sum_probs=28.4

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      ..+++.++|.|++|+|||+++..++.......|
T Consensus       200 l~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g  232 (454)
T 2r6a_A          200 FQRSDLIIVAARPSVGKTAFALNIAQNVATKTN  232 (454)
T ss_dssp             BCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSS
T ss_pred             CCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCC
Confidence            467999999999999999999998888776544

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=96.28  E-value=0.0025  Score=39.89  Aligned_cols=21  Identities=33%  Similarity=0.423  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|.+|+|||++++.+.+
T Consensus         4 ki~ivG~~~~GKSsli~~l~~   24 (169)
T 3q85_A            4 KVMLVGESGVGKSTLAGTFGG   24 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999998763

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=96.27  E-value=0.0026  Score=43.77  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .++++|++|+||||+++.+.+...
T Consensus         5 ~i~lvG~~g~GKTTL~n~l~g~~~   28 (271)
T 3k53_A            5 TVALVGNPNVGKTTIFNALTGLRQ   28 (271)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCc
Confidence            588999999999999999887643

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=96.27  E-value=0.0033  Score=39.60  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|..|+|||++++.+.+-
T Consensus        17 ~i~v~G~~~~GKSsli~~l~~~   38 (179)
T 1z0f_A           17 KYIIIGDMGVGKSCLLHQFTEK   38 (179)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4889999999999999987754

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=96.27  E-value=0.0033  Score=39.90  Aligned_cols=23  Identities=30%  Similarity=0.419  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.|+++|+.|+|||++++.+.+-
T Consensus        19 ~ki~v~G~~~~GKSsli~~l~~~   41 (187)
T 2a9k_A           19 HKVIMVGSGGVGKSALTLQFMYD   41 (187)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhhC
Confidence            35889999999999999987753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=96.27  E-value=0.0052  Score=45.65  Aligned_cols=27  Identities=26%  Similarity=0.530  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      -..++|.||+|+|||++++.+...+..
T Consensus        50 ~~~vLL~GppGtGKTtlAr~ia~~~~~   76 (447)
T 3pvs_A           50 LHSMILWGPPGTGKTTLAEVIARYANA   76 (447)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence            356999999999999999999988743

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=96.26  E-value=0.004  Score=39.86  Aligned_cols=23  Identities=26%  Similarity=0.270  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.|+++|+.|+|||++++.+++-
T Consensus         8 ~ki~v~G~~~~GKSsli~~l~~~   30 (208)
T 3clv_A            8 YKTVLLGESSVGKSSIVLRLTKD   30 (208)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            35889999999999999988765

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=96.25  E-value=0.0044  Score=43.71  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=23.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +..+.|.|++|+|||++++.+...+.
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~~~  177 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHELS  177 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHH
Confidence            57899999999999999999988776

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.25  E-value=0.0034  Score=39.68  Aligned_cols=22  Identities=32%  Similarity=0.311  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|.+|+|||++++.+.+-
T Consensus        12 ~i~v~G~~~~GKssli~~l~~~   33 (180)
T 2g6b_A           12 KVMLVGDSGVGKTCLLVRFKDG   33 (180)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4889999999999999987654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=96.25  E-value=0.0032  Score=40.99  Aligned_cols=30  Identities=23%  Similarity=0.203  Sum_probs=21.2

Q ss_pred             hchhcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          35 ALATSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        35 ~l~~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|.....-.|+++|..|+|||++++.+.+-
T Consensus        18 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~   47 (201)
T 3oes_A           18 GMPLVRYRKVVILGYRCVGKTSLAHQFVEG   47 (201)
T ss_dssp             -----CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred             CCCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence            344444456899999999999999988764

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=96.24  E-value=0.0044  Score=43.73  Aligned_cols=25  Identities=24%  Similarity=0.352  Sum_probs=22.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++|.||+|+|||++++.+...+
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~~   75 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATEA   75 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHH
Confidence            4679999999999999999998765

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=96.24  E-value=0.0034  Score=40.49  Aligned_cols=22  Identities=27%  Similarity=0.270  Sum_probs=18.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.++++|.+|+|||++++.+++
T Consensus        21 ~ki~ivG~~~vGKSsL~~~~~~   42 (184)
T 3ihw_A           21 LKVGIVGNLSSGKSALVHRYLT   42 (184)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4588999999999999987665

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=96.23  E-value=0.0035  Score=39.68  Aligned_cols=22  Identities=23%  Similarity=0.400  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|..|+|||++++.+.+-
T Consensus        14 ki~v~G~~~~GKSsli~~l~~~   35 (181)
T 2efe_B           14 KLVLLGDVGAGKSSLVLRFVKD   35 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4889999999999999887753

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=96.22  E-value=0.0034  Score=39.96  Aligned_cols=22  Identities=18%  Similarity=0.379  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|+.|+|||++++.+.+-
T Consensus        12 ki~v~G~~~~GKSsli~~l~~~   33 (186)
T 2bme_A           12 KFLVIGNAGTGKSCLLHQFIEK   33 (186)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            4889999999999999987653

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=96.22  E-value=0.0026  Score=40.61  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|.+|+|||++++.+.+-
T Consensus         3 ki~v~G~~~~GKSsli~~l~~~   24 (190)
T 2cxx_A            3 TIIFAGRSNVGKSTLIYRLTGK   24 (190)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCc
Confidence            3789999999999999987764

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.22  E-value=0.0041  Score=39.25  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .-.++++|.+|+|||++++.+.+
T Consensus         8 ~~~i~v~G~~~~GKssl~~~l~~   30 (178)
T 2lkc_A            8 PPVVTIMGHVDHGKTTLLDAIRH   30 (178)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhC
Confidence            45688999999999999998765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=96.22  E-value=0.0049  Score=40.63  Aligned_cols=27  Identities=37%  Similarity=0.457  Sum_probs=22.8

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..-..++++|.+|+||||++..++..+
T Consensus        28 ~~~~~i~i~G~~g~GKTTl~~~l~~~~   54 (221)
T 2wsm_A           28 SGTVAVNIMGAIGSGKTLLIERTIERI   54 (221)
T ss_dssp             HTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence            345678999999999999999888764

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=96.21  E-value=0.0034  Score=39.64  Aligned_cols=22  Identities=36%  Similarity=0.451  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|.+|+|||++++.+.+-
T Consensus         8 ki~v~G~~~~GKssl~~~l~~~   29 (178)
T 2hxs_A            8 KIVVLGDGASGKTSLTTCFAQE   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHGG
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            4889999999999999987753

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=96.20  E-value=0.0036  Score=41.15  Aligned_cols=25  Identities=28%  Similarity=0.399  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .-.++++|++|+|||++++.+.+..
T Consensus        12 ~~~i~~~G~~g~GKTsl~~~l~~~~   36 (218)
T 1nrj_B           12 QPSIIIAGPQNSGKTSLLTLLTTDS   36 (218)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhcCC
Confidence            3468899999999999999887654

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.20  E-value=0.0036  Score=44.02  Aligned_cols=25  Identities=24%  Similarity=0.332  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+++.||+|+|||++++.+.+.+.
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~l~   83 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKELY   83 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3489999999999999999998864

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=96.20  E-value=0.0037  Score=40.48  Aligned_cols=22  Identities=32%  Similarity=0.419  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+++|..|+||||+++.+.+-
T Consensus        16 ki~v~G~~~~GKSsli~~l~~~   37 (206)
T 2bov_A           16 KVIMVGSGGVGKSALTLQFMYD   37 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            5889999999999999887753

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=96.19  E-value=0.0036  Score=40.54  Aligned_cols=23  Identities=17%  Similarity=0.302  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .-.++++|++|+|||++++.+.+
T Consensus        23 ~~ki~~vG~~~vGKSsli~~l~~   45 (190)
T 1m2o_B           23 HGKLLFLGLDNAGKTTLLHMLKN   45 (190)
T ss_dssp             -CEEEEEESTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhc
Confidence            34689999999999999998775

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=96.19  E-value=0.0048  Score=44.26  Aligned_cols=26  Identities=23%  Similarity=0.296  Sum_probs=23.1

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....++|.||+|+|||++++.+...+
T Consensus       116 ~~~~vLl~GppGtGKT~la~aia~~~  141 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIGKCIASQS  141 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            46789999999999999999998865

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=96.18  E-value=0.004  Score=44.69  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...+++.||+|+|||++++.+...+
T Consensus        72 ~~~ill~Gp~GtGKT~la~~la~~l   96 (376)
T 1um8_A           72 KSNILLIGPTGSGKTLMAQTLAKHL   96 (376)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCCEEEECCCCCCHHHHHHHHHHHh
Confidence            5679999999999999999998876

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=96.17  E-value=0.0039  Score=40.02  Aligned_cols=22  Identities=23%  Similarity=0.285  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+++|+.|+|||++++.+.+-
T Consensus        18 ki~v~G~~~~GKSsli~~l~~~   39 (196)
T 3tkl_A           18 KLLLIGDSGVGKSCLLLRFADD   39 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            4889999999999999988763

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=96.17  E-value=0.0033  Score=39.22  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|.+|+|||++++.+.+
T Consensus         4 ki~~vG~~~~GKSsli~~l~~   24 (166)
T 3q72_A            4 KVLLLGAPGVGKSALARIFGG   24 (166)
T ss_dssp             EEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999987754

>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*

Probab=96.17  E-value=0.0036  Score=45.15  Aligned_cols=24  Identities=38%  Similarity=0.533  Sum_probs=21.0

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .....+|+|+||+|||+++..|.-
T Consensus        24 ~~gl~vi~G~NGaGKT~ileAI~~   47 (371)
T 3auy_A           24 EKGIVAIIGENGSGKSSIFEAVFF   47 (371)
T ss_dssp             CSEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHH
Confidence            457889999999999999998765

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=96.16  E-value=0.004  Score=39.60  Aligned_cols=22  Identities=32%  Similarity=0.483  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|..|+|||++++.+.+-
T Consensus        20 ki~v~G~~~~GKSsl~~~l~~~   41 (183)
T 3kkq_A           20 KLVVVGDGGVGKSALTIQFFQK   41 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHhC
Confidence            4789999999999999987753

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=96.16  E-value=0.0022  Score=40.49  Aligned_cols=21  Identities=29%  Similarity=0.412  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+++|.+|+|||++++.+.+
T Consensus        11 ~i~v~G~~~~GKssl~~~l~~   31 (181)
T 3tw8_B           11 KLLIIGDSGVGKSSLLLRFAD   31 (181)
T ss_dssp             EEEEECCTTSCHHHHHHHHCS
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            478999999999999987764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=96.16  E-value=0.004  Score=39.84  Aligned_cols=25  Identities=28%  Similarity=0.250  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      -.++++|.+|+|||++++.+.+...
T Consensus        15 ~ki~vvG~~~~GKssL~~~l~~~~~   39 (198)
T 3t1o_A           15 FKIVYYGPGLSGKTTNLKWIYSKVP   39 (198)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHTSC
T ss_pred             cEEEEECCCCCCHHHHHHHHHhhcc
Confidence            3588999999999999987766543

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=96.16  E-value=0.0049  Score=43.87  Aligned_cols=27  Identities=22%  Similarity=0.343  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...++|.|++|+|||++++.+...+..
T Consensus        45 ~~~vll~G~~G~GKT~la~~l~~~~~~   71 (384)
T 2qby_B           45 KFSNLFLGLTGTGKTFVSKYIFNEIEE   71 (384)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred             CCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence            568999999999999999999887643

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=96.15  E-value=0.004  Score=40.40  Aligned_cols=22  Identities=36%  Similarity=0.493  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|..|+||||+++.+.+.
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (207)
T 1vg8_A           10 KVIILGDSGVGKTSLMNQYVNK   31 (207)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHcC
Confidence            5889999999999999988764

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=96.14  E-value=0.004  Score=39.88  Aligned_cols=22  Identities=27%  Similarity=0.418  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|++|+|||++++.+.+-
T Consensus         9 ki~v~G~~~vGKSsli~~l~~~   30 (184)
T 1m7b_A            9 KIVVVGDSQCGKTALLHVFAKD   30 (184)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999987763

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=96.13  E-value=0.0039  Score=40.24  Aligned_cols=23  Identities=26%  Similarity=0.352  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.|+++|..|+|||++++.+.+-
T Consensus        24 ~ki~vvG~~~~GKSsli~~l~~~   46 (192)
T 2fg5_A           24 LKVCLLGDTGVGKSSIVCRFVQD   46 (192)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35889999999999999987753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=96.13  E-value=0.0042  Score=39.87  Aligned_cols=22  Identities=23%  Similarity=0.202  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|..|+|||++++.+.+.
T Consensus        24 ki~vvG~~~~GKSsli~~l~~~   45 (189)
T 2gf9_A           24 KLLLIGNSSVGKTSFLFRYADD   45 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            5889999999999999987754

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=96.12  E-value=0.0017  Score=44.47  Aligned_cols=27  Identities=19%  Similarity=0.331  Sum_probs=23.3

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..+..|+|.|..||||||.++.+...+
T Consensus        22 ~~~~~I~ieG~~GsGKST~~~~L~~~l   48 (263)
T 1p5z_B           22 TRIKKISIEGNIAAGKSTFVNILKQLC   48 (263)
T ss_dssp             -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence            346789999999999999999888776

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.12  E-value=0.0049  Score=46.19  Aligned_cols=29  Identities=24%  Similarity=0.450  Sum_probs=25.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .....-+++.||+|+|||.+++.+++.+.
T Consensus       240 i~pprGILLyGPPGTGKTlLAkAiA~e~~  268 (467)
T 4b4t_H          240 IDPPKGILLYGPPGTGKTLCARAVANRTD  268 (467)
T ss_dssp             CCCCSEEEECSCTTSSHHHHHHHHHHHHT
T ss_pred             CCCCCceEeeCCCCCcHHHHHHHHHhccC
Confidence            45677899999999999999999998653

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=96.12  E-value=0.0043  Score=39.33  Aligned_cols=21  Identities=24%  Similarity=0.218  Sum_probs=18.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|.+|+|||++++.+.+
T Consensus         7 ~i~~~G~~~~GKssl~~~l~~   27 (186)
T 1mh1_A            7 KCVVVGDGAVGKTCLLISYTT   27 (186)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999987764

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=96.12  E-value=0.0043  Score=39.86  Aligned_cols=22  Identities=27%  Similarity=0.291  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.|+++|.+|+|||++++.+.+
T Consensus        21 ~ki~v~G~~~~GKSsli~~l~~   42 (189)
T 1z06_A           21 FKIIVIGDSNVGKTCLTYRFCA   42 (189)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHc
Confidence            3588999999999999998765

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.11  E-value=0.0041  Score=40.03  Aligned_cols=22  Identities=27%  Similarity=0.379  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.|+++|.+|+||||+++.+.+
T Consensus         9 ~ki~vvG~~~~GKSsli~~l~~   30 (199)
T 2gf0_A            9 YRVVVFGAGGVGKSSLVLRFVK   30 (199)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHHc
Confidence            4588999999999999998876

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=96.11  E-value=0.0032  Score=46.39  Aligned_cols=23  Identities=22%  Similarity=0.297  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++|+|++|+||||+++.+++..
T Consensus       182 kvaivG~~gvGKSTLln~l~g~~  204 (439)
T 1mky_A          182 KVAIVGRPNVGKSTLFNAILNKE  204 (439)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTST
T ss_pred             eEEEECCCCCCHHHHHHHHhCCc
Confidence            68999999999999999998764

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=96.11  E-value=0.0038  Score=42.58  Aligned_cols=27  Identities=26%  Similarity=0.311  Sum_probs=23.4

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+..+.|.|++|+|||++++.+.....
T Consensus        28 ~~~~vll~G~~GtGKt~la~~i~~~~~   54 (265)
T 2bjv_A           28 LDKPVLIIGERGTGKELIASRLHYLSS   54 (265)
T ss_dssp             SCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred             CCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence            467799999999999999999987654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=96.10  E-value=0.0044  Score=39.90  Aligned_cols=21  Identities=24%  Similarity=0.336  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|..|+|||++++.+.+
T Consensus        23 ki~v~G~~~~GKSsli~~l~~   43 (191)
T 2a5j_A           23 KYIIIGDTGVGKSCLLLQFTD   43 (191)
T ss_dssp             EEEEESSTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            488999999999999988775

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.08  E-value=0.0039  Score=42.40  Aligned_cols=25  Identities=16%  Similarity=0.478  Sum_probs=21.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .-.|+|+|.+|+||||+++.+++.-
T Consensus        22 ~~~I~lvG~~g~GKStl~n~l~~~~   46 (260)
T 2xtp_A           22 ELRIILVGKTGTGKSAAGNSILRKQ   46 (260)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCC
Confidence            3468999999999999999887643

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=96.07  E-value=0.0046  Score=43.54  Aligned_cols=25  Identities=24%  Similarity=0.410  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++|.||+|+|||++++.+...+
T Consensus        55 ~~~vll~G~~GtGKT~la~~ia~~~   79 (338)
T 3pfi_A           55 LDHILFSGPAGLGKTTLANIISYEM   79 (338)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHHh
Confidence            3578999999999999999998765

>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*

Probab=96.07  E-value=0.0056  Score=40.81  Aligned_cols=26  Identities=31%  Similarity=0.469  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +..|++-|.-||||||.++.+...+.
T Consensus         2 ~kFI~~EG~dGsGKsTq~~~L~~~L~   27 (205)
T 4hlc_A            2 SAFITFEGPEGSGKTTVINEVYHRLV   27 (205)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence            46799999999999999999998884

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=96.07  E-value=0.0045  Score=39.26  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.++++|.+|+|||++++.+..
T Consensus         7 ~ki~~~G~~~~GKSsli~~l~~   28 (181)
T 3t5g_A            7 RKIAILGYRSVGKSSLTIQFVE   28 (181)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            3588999999999999988774

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=96.06  E-value=0.0046  Score=39.84  Aligned_cols=23  Identities=26%  Similarity=0.192  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+++|..|+|||++++.+.+-.
T Consensus        25 ki~v~G~~~~GKSsli~~l~~~~   47 (191)
T 3dz8_A           25 KLLIIGNSSVGKTSFLFRYADDT   47 (191)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEECCCCcCHHHHHHHHhcCC
Confidence            48899999999999999887643

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=96.05  E-value=0.0053  Score=44.07  Aligned_cols=26  Identities=23%  Similarity=0.335  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...++|.||+|+|||++++.++..+.
T Consensus        84 ~~~iLL~GppGtGKT~la~ala~~~~  109 (355)
T 2qp9_X           84 TSGILLYGPPGTGKSYLAKAVATEAN  109 (355)
T ss_dssp             CCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCcHHHHHHHHHHHhC
Confidence            45689999999999999999988763

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=96.04  E-value=0.0059  Score=39.54  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=20.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      ....-.++++|+.|+|||++++.+.
T Consensus        26 ~~~~~ki~v~G~~~vGKSsLi~~l~   50 (192)
T 2b6h_A           26 GKKQMRILMVGLDAAGKTTILYKLK   50 (192)
T ss_dssp             TTSCEEEEEEESTTSSHHHHHHHHC
T ss_pred             cCCccEEEEECCCCCCHHHHHHHHH
Confidence            3445669999999999999998765

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=96.04  E-value=0.0049  Score=40.01  Aligned_cols=23  Identities=17%  Similarity=0.361  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .-.|+++|+.|+|||++++.+.+
T Consensus        28 ~~ki~v~G~~~~GKSsli~~l~~   50 (199)
T 2p5s_A           28 AYKIVLAGDAAVGKSSFLMRLCK   50 (199)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHh
Confidence            45689999999999999998765

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.02  E-value=0.0071  Score=44.96  Aligned_cols=29  Identities=28%  Similarity=0.344  Sum_probs=24.8

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .....-+.+.||+|+|||.+++.+++.+.
T Consensus       213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~  241 (437)
T 4b4t_I          213 IKPPKGVILYGAPGTGKTLLAKAVANQTS  241 (437)
T ss_dssp             CCCCSEEEEESSTTTTHHHHHHHHHHHHT
T ss_pred             CCCCCCCceECCCCchHHHHHHHHHHHhC
Confidence            44567799999999999999999998764

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=96.02  E-value=0.0051  Score=39.38  Aligned_cols=23  Identities=30%  Similarity=0.346  Sum_probs=19.7

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.|+++|+.|+|||++++.+.+-
T Consensus        16 ~~i~v~G~~~~GKssli~~l~~~   38 (195)
T 1x3s_A           16 LKILIIGESGVGKSSLLLRFTDD   38 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHHcC
Confidence            35889999999999999988754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=96.02  E-value=0.0051  Score=39.55  Aligned_cols=23  Identities=22%  Similarity=0.226  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.|+++|..|+|||++++.+.+-
T Consensus        23 ~ki~v~G~~~~GKSsli~~l~~~   45 (188)
T 1zd9_A           23 MELTLVGLQYSGKTTFVNVIASG   45 (188)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             cEEEEECCCCCCHHHHHHHHHcC
Confidence            45889999999999999988753

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=96.01  E-value=0.0051  Score=39.96  Aligned_cols=21  Identities=33%  Similarity=0.542  Sum_probs=18.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|.+|+|||++++.+.+
T Consensus         8 kv~lvG~~~vGKSsL~~~~~~   28 (192)
T 2cjw_A            8 RVVLIGEQGVGKSTLANIFAG   28 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999998775

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=96.01  E-value=0.0044  Score=40.18  Aligned_cols=22  Identities=27%  Similarity=0.240  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|..|+|||++++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (203)
T 1zbd_A           10 KILIIGNSSVGKTSFLFRYADD   31 (203)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999887653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=96.01  E-value=0.0049  Score=40.11  Aligned_cols=22  Identities=23%  Similarity=0.247  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+++|.+|+|||++++.+.+-
T Consensus        10 ki~v~G~~~~GKSsli~~l~~~   31 (206)
T 2bcg_Y           10 KLLLIGNSGVGKSCLLLRFSDD   31 (206)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            4789999999999999887653

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=96.01  E-value=0.0049  Score=40.49  Aligned_cols=22  Identities=32%  Similarity=0.403  Sum_probs=19.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|.+|+|||++++.+.+-
T Consensus        28 ki~lvG~~~vGKSsLi~~l~~~   49 (201)
T 2ew1_A           28 KIVLIGNAGVGKTCLVRRFTQG   49 (201)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHS
T ss_pred             EEEEECcCCCCHHHHHHHHHhC
Confidence            5889999999999999987653

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=96.00  E-value=0.005  Score=43.92  Aligned_cols=30  Identities=27%  Similarity=0.269  Sum_probs=26.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...+..+.|.|++|+|||++++.++..+..
T Consensus        42 ~~~~~~lli~GpPGTGKT~~v~~v~~~L~~   71 (318)
T 3te6_A           42 SSQNKLFYITNADDSTKFQLVNDVMDELIT   71 (318)
T ss_dssp             TTCCCEEEEECCCSHHHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence            456788999999999999999999998854

>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}

Probab=96.00  E-value=0.0065  Score=45.00  Aligned_cols=29  Identities=31%  Similarity=0.559  Sum_probs=24.9

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      ..++|.|+.|+|||+++..++..+.....
T Consensus        46 ~~~li~G~aGTGKT~ll~~~~~~l~~~~~   74 (459)
T 3upu_A           46 HHVTINGPAGTGATTLTKFIIEALISTGE   74 (459)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred             CEEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence            49999999999999999999888865543

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=96.00  E-value=0.0039  Score=45.16  Aligned_cols=24  Identities=25%  Similarity=0.224  Sum_probs=20.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .++|+|++|+||||+++.+.+...
T Consensus       181 ~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          181 SIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             EEEEECBTTSSHHHHHHHHHCC--
T ss_pred             EEEEECCCCCCHHHHHHHHHCCCc
Confidence            388999999999999999887543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=96.00  E-value=0.0023  Score=39.97  Aligned_cols=27  Identities=19%  Similarity=0.231  Sum_probs=22.0

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..+..+.|.||+|+|||++++.+....
T Consensus        25 ~~~~~vll~G~~GtGKt~lA~~i~~~~   51 (143)
T 3co5_A           25 KRTSPVFLTGEAGSPFETVARYFHKNG   51 (143)
T ss_dssp             TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred             CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence            346679999999999999998776543

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=96.00  E-value=0.006  Score=40.31  Aligned_cols=26  Identities=31%  Similarity=0.357  Sum_probs=22.1

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....++++|.+|+||||++..++...
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~   62 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNL   62 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence            35678899999999999999888764

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=95.99  E-value=0.007  Score=38.26  Aligned_cols=23  Identities=22%  Similarity=0.076  Sum_probs=19.5

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .-.++++|..|+|||++++.+.+
T Consensus         8 ~~ki~v~G~~~~GKssl~~~~~~   30 (182)
T 3bwd_D            8 FIKCVTVGDGAVGKTCLLISYTS   30 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhc
Confidence            34588999999999999987765

>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*

Probab=95.99  E-value=0.007  Score=45.49  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=23.1

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .....++|.||+|+|||++++.+...+
T Consensus       236 ~~~~~vLL~GppGtGKT~lAraia~~~  262 (489)
T 3hu3_A          236 KPPRGILLYGPPGTGKTLIARAVANET  262 (489)
T ss_dssp             CCCCEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCCCcEEEECcCCCCHHHHHHHHHHHh
Confidence            345679999999999999999987764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=95.98  E-value=0.0054  Score=39.52  Aligned_cols=23  Identities=22%  Similarity=0.203  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.++++|.+|+|||++++.+.+-
T Consensus        24 ~ki~~vG~~~~GKSsl~~~l~~~   46 (194)
T 3reg_A           24 LKIVVVGDGAVGKTCLLLAFSKG   46 (194)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEECcCCCCHHHHHHHHhcC
Confidence            35889999999999999987764

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=95.97  E-value=0.0045  Score=44.38  Aligned_cols=21  Identities=19%  Similarity=0.430  Sum_probs=20.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+|+|.+|+||||+++.+.+
T Consensus        36 ~I~vvG~~~sGKSSLln~l~g   56 (360)
T 3t34_A           36 AIAVVGGQSSGKSSVLESIVG   56 (360)
T ss_dssp             EEEEECBTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            788999999999999999998

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=95.96  E-value=0.0055  Score=39.46  Aligned_cols=23  Identities=26%  Similarity=0.348  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.|+++|..|+|||++++.+.+-
T Consensus        22 ~ki~vvG~~~vGKTsLi~~l~~~   44 (187)
T 3c5c_A           22 VNLAILGRRGAGKSALTVKFLTK   44 (187)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHS
T ss_pred             EEEEEECCCCCcHHHHHHHHHhC
Confidence            35889999999999999877653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=95.96  E-value=0.0046  Score=39.63  Aligned_cols=24  Identities=21%  Similarity=0.257  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-.++++|++|+|||++++.+.+.
T Consensus        16 ~~ki~ivG~~~vGKSsL~~~l~~~   39 (181)
T 1fzq_A           16 EVRILLLGLDNAGKTTLLKQLASE   39 (181)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcC
Confidence            446889999999999999887653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.95  E-value=0.0056  Score=39.86  Aligned_cols=23  Identities=22%  Similarity=0.328  Sum_probs=19.6

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.|+++|++|+|||++++.+.+-
T Consensus        21 ~~i~v~G~~~~GKSsli~~l~~~   43 (213)
T 3cph_A           21 MKILLIGDSGVGKSCLLVRFVED   43 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhC
Confidence            45889999999999999987753

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=95.93  E-value=0.0054  Score=42.82  Aligned_cols=24  Identities=13%  Similarity=0.217  Sum_probs=21.7

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      +..++|.|+.|+|||++++.+...
T Consensus        31 ~~~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           31 YPLTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCcCCHHHHHHHHHHH
Confidence            589999999999999999988765

>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*

Probab=95.91  E-value=0.0057  Score=46.32  Aligned_cols=29  Identities=3%  Similarity=0.082  Sum_probs=25.6

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +.+..|+++|.+||||||+.+.+...+..
T Consensus       393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~  421 (511)
T 1g8f_A          393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ  421 (511)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred             ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence            34678999999999999999999998875

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.91  E-value=0.0041  Score=43.34  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.5

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....++|.||+|+|||++++.+...+
T Consensus        37 ~~~~vll~G~~GtGKT~la~~i~~~~   62 (324)
T 1hqc_A           37 PLEHLLLFGPPGLGKTTLAHVIAHEL   62 (324)
T ss_dssp             CCCCCEEECCTTCCCHHHHHHHHHHH
T ss_pred             CCCcEEEECCCCCCHHHHHHHHHHHh
Confidence            34679999999999999999988765

>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A

Probab=95.90  E-value=0.0062  Score=43.57  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=23.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ...++++.|.|++|+|||+++..++..
T Consensus       119 l~~G~i~~I~G~~GsGKTtla~~la~~  145 (343)
T 1v5w_A          119 IESMAITEAFGEFRTGKTQLSHTLCVT  145 (343)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            346899999999999999999887765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=95.90  E-value=0.006  Score=39.91  Aligned_cols=24  Identities=25%  Similarity=0.227  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-.++++|.+|+|||++++.+.+-
T Consensus         7 ~~ki~vvG~~~~GKTsli~~l~~~   30 (214)
T 2fh5_B            7 QRAVLFVGLCDSGKTLLFVRLLTG   30 (214)
T ss_dssp             -CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            346889999999999999987753

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=95.90  E-value=0.0057  Score=39.98  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.5

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.|+++|..|+|||++++.+.+
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~   47 (207)
T 2fv8_A           26 KKLVVVGDGACGKTCLLIVFSK   47 (207)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHhc
Confidence            4689999999999999988775

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=95.90  E-value=0.0058  Score=40.21  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.++++|.+|+|||++++.+.+-
T Consensus        29 ~ki~vvG~~~vGKSsLi~~l~~~   51 (205)
T 1gwn_A           29 CKIVVVGDSQCGKTALLHVFAKD   51 (205)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHS
T ss_pred             eEEEEECCCCCCHHHHHHHHhcC
Confidence            35889999999999999988764

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=95.90  E-value=0.0064  Score=43.38  Aligned_cols=24  Identities=33%  Similarity=0.480  Sum_probs=21.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .+..++++|+||+||||++..+++
T Consensus       143 ~g~~vl~~G~sG~GKSt~a~~l~~  166 (314)
T 1ko7_A          143 YGVGVLITGDSGIGKSETALELIK  166 (314)
T ss_dssp             TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHh
Confidence            478899999999999999887776

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=95.90  E-value=0.0051  Score=39.40  Aligned_cols=25  Identities=24%  Similarity=0.246  Sum_probs=20.8

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      ...-.++++|..|+|||++++.+.+
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~   38 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSM   38 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhc
Confidence            3445689999999999999998774

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=95.88  E-value=0.0043  Score=39.62  Aligned_cols=25  Identities=20%  Similarity=0.151  Sum_probs=20.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ..-.++++|++|+|||++++.+.+-
T Consensus        17 ~~~~i~v~G~~~~GKssl~~~l~~~   41 (186)
T 1ksh_A           17 RELRLLMLGLDNAGKTTILKKFNGE   41 (186)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhcC
Confidence            3456889999999999999887653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=95.88  E-value=0.0043  Score=39.26  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|.+|+|||++++.+.+
T Consensus         9 ki~~vG~~~vGKTsli~~l~~   29 (178)
T 2iwr_A            9 RLGVLGDARSGKSSLIHRFLT   29 (178)
T ss_dssp             EEEEECCGGGCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999988775

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=95.88  E-value=0.0047  Score=40.22  Aligned_cols=22  Identities=18%  Similarity=0.360  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.|+++|..|+|||++++.+.+
T Consensus        26 ~ki~v~G~~~~GKSsLi~~l~~   47 (200)
T 2o52_A           26 FKFLVIGSAGTGKSCLLHQFIE   47 (200)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHC
T ss_pred             eEEEEECcCCCCHHHHHHHHHh
Confidence            3588999999999999998764

>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*

Probab=95.87  E-value=0.0088  Score=39.08  Aligned_cols=24  Identities=38%  Similarity=0.457  Sum_probs=19.3

Q ss_pred             CcEEEEEcCCCCchHHHH-HHHHHH
Q psy7658          41 NQVVVISGESGSGKTECT-KLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~-~~i~~~   64 (114)
                      +.+++++|+.|+||||++ +.+..+
T Consensus         3 g~i~vi~G~~gsGKTT~ll~~~~~~   27 (184)
T 2orw_A            3 GKLTVITGPMYSGKTTELLSFVEIY   27 (184)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHH
Confidence            678999999999999997 444443

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.87  E-value=0.0084  Score=44.67  Aligned_cols=28  Identities=25%  Similarity=0.468  Sum_probs=24.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..+++++|++|+||||++..++.++...
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~  127 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKR  127 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence            5789999999999999999999887654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=95.85  E-value=0.0045  Score=40.37  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=18.9

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.++++|++|+|||++++.+.+
T Consensus        26 ~ki~lvG~~~vGKSsLi~~l~~   47 (198)
T 1f6b_A           26 GKLVFLGLDNAGKTTLLHMLKD   47 (198)
T ss_dssp             EEEEEEEETTSSHHHHHHHHSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhc
Confidence            4588999999999999987754

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=95.84  E-value=0.0047  Score=39.44  Aligned_cols=22  Identities=27%  Similarity=0.283  Sum_probs=19.4

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.++++|..|+|||++++.+.+
T Consensus        22 ~~i~v~G~~~~GKSsli~~l~~   43 (181)
T 2h17_A           22 HKVIIVGLDNAGKTTILYQFSM   43 (181)
T ss_dssp             EEEEEEEETTSSHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHhc
Confidence            4588999999999999998775

>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*

Probab=95.83  E-value=0.0073  Score=46.86  Aligned_cols=26  Identities=35%  Similarity=0.516  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+..|+|+|.+||||||+++.+...+
T Consensus        51 ~g~lIvLtGlsGSGKSTlAr~La~~L   76 (630)
T 1x6v_B           51 RGCTVWLTGLSGAGKTTVSMALEEYL   76 (630)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence            46689999999999999999998876

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.83  E-value=0.0056  Score=41.33  Aligned_cols=26  Identities=15%  Similarity=0.406  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...+++.||.|+|||+++..++.++.
T Consensus        58 kn~ili~GPPGtGKTt~a~ala~~l~   83 (212)
T 1tue_A           58 KNCLVFCGPANTGKSYFGMSFIHFIQ   83 (212)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999988873

>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*

Probab=95.81  E-value=0.0077  Score=45.57  Aligned_cols=26  Identities=35%  Similarity=0.526  Sum_probs=22.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...+|+++|.+|+||||+.+.+...+
T Consensus        34 ~~~lIvlvGlpGSGKSTia~~La~~L   59 (520)
T 2axn_A           34 SPTVIVMVGLPARGKTYISKKLTRYL   59 (520)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence            34689999999999999999998776

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=95.80  E-value=0.0057  Score=42.46  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|.+|+||||+++.+.+.
T Consensus         5 kI~lvG~~nvGKSTL~n~L~g~   26 (272)
T 3b1v_A            5 EIALIGNPNSGKTSLFNLITGH   26 (272)
T ss_dssp             EEEEECCTTSSHHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            5889999999999999998864

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=95.79  E-value=0.0072  Score=38.30  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=20.2

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      ...-.++++|++|+||||+++.+.
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~   39 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQ   39 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHh
Confidence            345678999999999999998765

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=95.79  E-value=0.011  Score=39.40  Aligned_cols=26  Identities=23%  Similarity=0.432  Sum_probs=22.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      ...++.+.|.|++|+|||+++..++-
T Consensus        27 l~~G~l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           27 FPEGTTVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             EETTCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence            45789999999999999999876543

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.79  E-value=0.0085  Score=45.05  Aligned_cols=25  Identities=36%  Similarity=0.494  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++|.||+|+|||++++.++..+
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~l  101 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQEL  101 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHc
Confidence            3689999999999999999998876

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=95.79  E-value=0.0048  Score=41.07  Aligned_cols=24  Identities=21%  Similarity=0.486  Sum_probs=20.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-.|+++|.+|+|||++++.+++-
T Consensus        29 ~~kI~vvG~~~vGKSsLin~l~~~   52 (228)
T 2qu8_A           29 KKTIILSGAPNVGKSSFMNIVSRA   52 (228)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHTTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            356899999999999999987654

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=95.78  E-value=0.0039  Score=43.02  Aligned_cols=21  Identities=29%  Similarity=0.509  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+|+|++|+||||+++.+.+
T Consensus        10 ~I~vvG~~g~GKSTLin~L~~   30 (274)
T 3t5d_A           10 TLMVVGESGLGKSTLINSLFL   30 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHSS
T ss_pred             EEEEECCCCCCHHHHHHHHhC
Confidence            488999999999999987653

>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}

Probab=95.77  E-value=0.0084  Score=39.72  Aligned_cols=26  Identities=23%  Similarity=0.290  Sum_probs=22.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+|.|.|+.||||||..+.+...+.
T Consensus         6 ~~iI~i~g~~GsGk~ti~~~la~~lg   31 (201)
T 3fdi_A            6 QIIIAIGREFGSGGHLVAKKLAEHYN   31 (201)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            35799999999999999999988763

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=95.77  E-value=0.0071  Score=39.19  Aligned_cols=24  Identities=25%  Similarity=0.407  Sum_probs=19.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-.++++|.+|+|||++++.+.+.
T Consensus        20 ~~ki~~vG~~~vGKTsLi~~l~~~   43 (196)
T 3llu_A           20 KPRILLMGLRRSGKSSIQKVVFHK   43 (196)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhc
Confidence            456899999999999999866653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.76  E-value=0.0072  Score=38.85  Aligned_cols=22  Identities=23%  Similarity=0.185  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|..|+|||++++.+.+-
T Consensus        20 ki~v~G~~~~GKssli~~l~~~   41 (194)
T 2atx_A           20 KCVVVGDGAVGKTCLLMSYAND   41 (194)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5889999999999999987754

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.76  E-value=0.0072  Score=39.29  Aligned_cols=22  Identities=27%  Similarity=0.376  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.++++|..|+|||++++.+.+
T Consensus        26 ~ki~vvG~~~~GKSsli~~l~~   47 (201)
T 2gco_A           26 KKLVIVGDGACGKTCLLIVFSK   47 (201)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHh
Confidence            3588999999999999988775

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=95.75  E-value=0.0092  Score=42.25  Aligned_cols=27  Identities=30%  Similarity=0.492  Sum_probs=23.3

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...+++.|+.|+|||++++.+...+..
T Consensus        38 ~~~~ll~G~~G~GKT~la~~la~~l~~   64 (373)
T 1jr3_A           38 HHAYLFSGTRGVGKTSIARLLAKGLNC   64 (373)
T ss_dssp             CSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence            456899999999999999999887754

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.74  E-value=0.0043  Score=43.68  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...++|.||+|+|||++++.+...+.
T Consensus        45 ~~~vLl~G~~GtGKT~la~~la~~~~   70 (350)
T 1g8p_A           45 IGGVLVFGDRGTGKSTAVRALAALLP   70 (350)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CceEEEECCCCccHHHHHHHHHHhCc
Confidence            44599999999999999999998775

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=95.74  E-value=0.006  Score=40.02  Aligned_cols=21  Identities=29%  Similarity=0.336  Sum_probs=18.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+++|..|+|||++++.+.+
T Consensus        27 ki~vvG~~~~GKSsLi~~l~~   47 (217)
T 2f7s_A           27 KLLALGDSGVGKTTFLYRYTD   47 (217)
T ss_dssp             EEEEESCTTSSHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhc
Confidence            488999999999999988764

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=95.74  E-value=0.0044  Score=39.89  Aligned_cols=24  Identities=33%  Similarity=0.325  Sum_probs=19.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-.|+++|..|+|||++++.+.+-
T Consensus        17 ~~ki~v~G~~~~GKSsl~~~l~~~   40 (199)
T 4bas_A           17 KLQVVMCGLDNSGKTTIINQVKPA   40 (199)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHSCC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcC
Confidence            346889999999999999877653

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=95.73  E-value=0.0062  Score=39.40  Aligned_cols=24  Identities=21%  Similarity=0.220  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-.|+++|..|+|||++++.+.+-
T Consensus        20 ~~ki~~~G~~~~GKssl~~~l~~~   43 (201)
T 2q3h_A           20 GVKCVLVGDGAVGKTSLVVSYTTN   43 (201)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC
Confidence            345889999999999999887643

>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*

Probab=95.71  E-value=0.0079  Score=42.57  Aligned_cols=28  Identities=25%  Similarity=0.278  Sum_probs=24.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++++.|.|++|+|||+++..++...
T Consensus       104 l~~G~i~~i~G~~GsGKT~la~~la~~~  131 (324)
T 2z43_A          104 IETRTMTEFFGEFGSGKTQLCHQLSVNV  131 (324)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCCcEEEEECCCCCCHhHHHHHHHHHH
Confidence            3568999999999999999998877654

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=95.70  E-value=0.0096  Score=44.02  Aligned_cols=26  Identities=23%  Similarity=0.271  Sum_probs=23.2

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....++|.||+|+|||++++.+...+
T Consensus       166 ~~~~vLL~GppGtGKT~lA~aia~~~  191 (444)
T 2zan_A          166 PWRGILLFGPPGTGKSYLAKAVATEA  191 (444)
T ss_dssp             CCSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHHc
Confidence            34679999999999999999999876

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=95.70  E-value=0.0056  Score=39.87  Aligned_cols=21  Identities=33%  Similarity=0.398  Sum_probs=18.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~   62 (114)
                      -.++++|.+|+|||++++.+.
T Consensus        24 ~ki~vvG~~~vGKSsLi~~l~   44 (195)
T 3cbq_A           24 FKVMLVGESGVGKSTLAGTFG   44 (195)
T ss_dssp             EEEEEECSTTSSHHHHHHHTC
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            358899999999999998774

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=95.69  E-value=0.0072  Score=41.50  Aligned_cols=23  Identities=17%  Similarity=0.206  Sum_probs=20.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++++|.+|+||||+++.+.+..
T Consensus         3 kI~lvG~~n~GKSTL~n~L~g~~   25 (256)
T 3iby_A            3 HALLIGNPNCGKTTLFNALTNAN   25 (256)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC
Confidence            57899999999999999887753

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.69  E-value=0.01  Score=42.87  Aligned_cols=25  Identities=28%  Similarity=0.329  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++|.|++|+|||++++.++..+
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~~  172 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAES  172 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHHT
T ss_pred             CceEEEECCCCCCHHHHHHHHHHhh
Confidence            5789999999999999999998765

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=95.69  E-value=0.0061  Score=40.15  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.|+++|.+|+|||++++.+.+
T Consensus        35 ~ki~vvG~~~vGKSsli~~l~~   56 (214)
T 2j1l_A           35 VKVVLVGDGGCGKTSLLMVFAD   56 (214)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHC
T ss_pred             EEEEEECcCCCCHHHHHHHHHc
Confidence            3588999999999999998765

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=95.68  E-value=0.0043  Score=44.76  Aligned_cols=22  Identities=27%  Similarity=0.457  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++|+|++|+||||+++.+.+.
T Consensus        39 ~I~vvG~~g~GKSTLln~L~~~   60 (361)
T 2qag_A           39 TLMVVGESGLGKSTLINSLFLT   60 (361)
T ss_dssp             CEEECCCTTSCHHHHHHHHTTC
T ss_pred             EEEEEcCCCCCHHHHHHHHhCC
Confidence            4789999999999999987654

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=95.67  E-value=0.012  Score=41.60  Aligned_cols=29  Identities=17%  Similarity=0.216  Sum_probs=24.7

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+++.++|.|++|+|||+++..++....
T Consensus        65 l~~G~l~li~G~pG~GKTtl~l~ia~~~a   93 (315)
T 3bh0_A           65 YKRRNFVLIAARPSMGKTAFALKQAKNMS   93 (315)
T ss_dssp             BCTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            46799999999999999999887776554

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=95.66  E-value=0.0075  Score=38.94  Aligned_cols=21  Identities=33%  Similarity=0.465  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+++|..|+|||++++.+.+
T Consensus        28 ki~vvG~~~~GKSsLi~~l~~   48 (192)
T 2il1_A           28 QVIIIGSRGVGKTSLMERFTD   48 (192)
T ss_dssp             EEEEECSTTSSHHHHHHHHCC
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            488999999999999987764

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=95.66  E-value=0.0077  Score=42.38  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.++|+|.+|+||||+++.+++.
T Consensus         8 g~V~ivG~~nvGKSTLln~l~g~   30 (301)
T 1wf3_A            8 GFVAIVGKPNVGKSTLLNNLLGV   30 (301)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            35899999999999999988864

>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}

Probab=95.66  E-value=0.0028  Score=47.69  Aligned_cols=25  Identities=24%  Similarity=0.389  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+.+|+|+||+|||+++..+...+.
T Consensus        61 g~n~i~G~NGaGKS~lleAl~~llg   85 (517)
T 4ad8_A           61 GFCAFTGETGAGKSIIVDALGLLLG   85 (517)
T ss_dssp             SEEEEEESHHHHHHHHTHHHHHHTC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4999999999999999998876643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=95.65  E-value=0.0076  Score=41.40  Aligned_cols=23  Identities=17%  Similarity=0.442  Sum_probs=20.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.++++|++|+||||+++.+++-
T Consensus        40 ~~I~vvG~~g~GKSSLin~l~~~   62 (270)
T 1h65_A           40 LTILVMGKGGVGKSSTVNSIIGE   62 (270)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS
T ss_pred             eEEEEECCCCCCHHHHHHHHhCC
Confidence            46889999999999999988764

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=95.65  E-value=0.0083  Score=39.10  Aligned_cols=21  Identities=24%  Similarity=0.357  Sum_probs=18.6

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+++|..|+|||++++.+.+
T Consensus        31 ki~vvG~~~vGKSsli~~l~~   51 (201)
T 2hup_A           31 KLVLVGDASVGKTCVVQRFKT   51 (201)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHhh
Confidence            488999999999999988765

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=95.62  E-value=0.0087  Score=39.10  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .-.|+++|.+|+|||++++.+..
T Consensus        30 ~~ki~vvG~~~~GKSsLi~~l~~   52 (204)
T 4gzl_A           30 AIKCVVVGDGAVGKTCLLISYTT   52 (204)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHHh
Confidence            45689999999999999987764

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=95.62  E-value=0.01  Score=44.15  Aligned_cols=27  Identities=30%  Similarity=0.454  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ....|+++|.+|+||||+.+.+...+.
T Consensus        38 ~~~~IvlvGlpGsGKSTia~~La~~l~   64 (469)
T 1bif_A           38 CPTLIVMVGLPARGKTYISKKLTRYLN   64 (469)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            346799999999999999999887653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=95.62  E-value=0.005  Score=40.49  Aligned_cols=24  Identities=17%  Similarity=0.393  Sum_probs=20.7

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-.|+++|.+|+||||+++.+++.
T Consensus        29 ~~~i~v~G~~~~GKSslin~l~~~   52 (223)
T 4dhe_A           29 QPEIAFAGRSNAGKSTAINVLCNQ   52 (223)
T ss_dssp             SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC
Confidence            456899999999999999987764

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=95.61  E-value=0.0039  Score=40.07  Aligned_cols=25  Identities=24%  Similarity=0.146  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .-.|+++|..|+|||++++.+.+..
T Consensus        21 ~~ki~v~G~~~~GKSsli~~l~~~~   45 (190)
T 2h57_A           21 EVHVLCLGLDNSGKTTIINKLKPSN   45 (190)
T ss_dssp             CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred             ccEEEEECCCCCCHHHHHHHHhcCC
Confidence            3458899999999999998876543

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=95.60  E-value=0.0067  Score=42.66  Aligned_cols=26  Identities=15%  Similarity=0.262  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+..+++.|++|+|||++++.+...+
T Consensus        45 ~~~~vll~G~pGtGKT~la~~la~~~   70 (331)
T 2r44_A           45 TGGHILLEGVPGLAKTLSVNTLAKTM   70 (331)
T ss_dssp             HTCCEEEESCCCHHHHHHHHHHHHHT
T ss_pred             cCCeEEEECCCCCcHHHHHHHHHHHh
Confidence            35689999999999999999998865

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=95.60  E-value=0.011  Score=43.70  Aligned_cols=27  Identities=30%  Similarity=0.510  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+..+++.||+|+|||++++.+...+.
T Consensus        62 ~~~~iLl~GppGtGKT~la~ala~~l~   88 (456)
T 2c9o_A           62 AGRAVLLAGPPGTGKTALALAIAQELG   88 (456)
T ss_dssp             TTCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred             CCCeEEEECCCcCCHHHHHHHHHHHhC
Confidence            346799999999999999999998874

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=95.60  E-value=0.0092  Score=39.48  Aligned_cols=22  Identities=27%  Similarity=0.453  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+++|..|+|||++++.+.+-
T Consensus        15 ki~v~G~~~vGKSsli~~l~~~   36 (223)
T 3cpj_B           15 KIVLIGDSGVGKSNLLSRFTKN   36 (223)
T ss_dssp             EEEEESCTTSSHHHHHHHHHHC
T ss_pred             EEEEECcCCCCHHHHHHHHhcC
Confidence            4889999999999999887753

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=95.60  E-value=0.0043  Score=39.44  Aligned_cols=21  Identities=29%  Similarity=0.365  Sum_probs=9.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|..|+|||++++.+.+
T Consensus        10 ki~v~G~~~~GKssl~~~l~~   30 (183)
T 2fu5_C           10 KLLLIGDSGVGKTCVLFRFSE   30 (183)
T ss_dssp             EEEEECCCCC-----------
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999987764

>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*

Probab=95.59  E-value=0.015  Score=40.73  Aligned_cols=26  Identities=23%  Similarity=0.399  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...+++.||+|+|||++++.+...+.
T Consensus        48 ~~~~L~~G~~G~GKT~la~~la~~l~   73 (324)
T 3u61_B           48 PHIILHSPSPGTGKTTVAKALCHDVN   73 (324)
T ss_dssp             CSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence            45778889999999999999988763

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=95.59  E-value=0.013  Score=41.96  Aligned_cols=27  Identities=26%  Similarity=0.310  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...+++|+|..|+||||++..++..+.
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~  104 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGMHLI  104 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence            355799999999999999999887764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.58  E-value=0.0086  Score=42.14  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -.++++|.+|+||||+++.+++.
T Consensus        11 g~v~ivG~~nvGKSTLin~l~g~   33 (308)
T 3iev_A           11 GYVAIVGKPNVGKSTLLNNLLGT   33 (308)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC
Confidence            46889999999999999988764

>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}

Probab=95.57  E-value=0.014  Score=38.53  Aligned_cols=26  Identities=35%  Similarity=0.571  Sum_probs=22.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .|++-|.-||||||.++.+...+...
T Consensus         2 fI~~EG~DGsGKsTq~~~L~~~L~~~   27 (197)
T 3hjn_A            2 FITFEGIDGSGKSTQIQLLAQYLEKR   27 (197)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            47899999999999999999988653

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=95.57  E-value=0.0097  Score=39.27  Aligned_cols=24  Identities=21%  Similarity=0.332  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-.|+++|..|+|||++++.+.+-
T Consensus        27 ~~ki~vvG~~~vGKSsL~~~l~~~   50 (214)
T 3q3j_B           27 RCKLVLVGDVQCGKTAMLQVLAKD   50 (214)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcC
Confidence            345889999999999999987653

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=95.56  E-value=0.013  Score=43.58  Aligned_cols=28  Identities=29%  Similarity=0.353  Sum_probs=23.9

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .....++|.||+|+|||++++.+...+.
T Consensus       199 ~~~~~~LL~G~pG~GKT~la~~la~~l~  226 (468)
T 3pxg_A          199 RTKNNPVLIGEPGVGKTAIAEGLAQQII  226 (468)
T ss_dssp             SSSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred             cCCCCeEEECCCCCCHHHHHHHHHHHHH
Confidence            3456789999999999999999998873

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=95.53  E-value=0.0088  Score=40.92  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=20.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-.|+++|.+|+||||+++.+++.
T Consensus        36 ~~~I~lvG~~g~GKSSLin~l~~~   59 (262)
T 3def_A           36 SMTVLVLGKGGVGKSSTVNSLIGE   59 (262)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTS
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            345899999999999999988864

>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*

Probab=95.51  E-value=0.02  Score=44.76  Aligned_cols=29  Identities=24%  Similarity=0.298  Sum_probs=24.9

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ......++|+|++|+|||++++.+...+.
T Consensus       204 ~~~~~~vlL~G~~GtGKT~la~~la~~l~  232 (758)
T 1r6b_X          204 RRRKNNPLLVGESGVGKTAIAEGLAWRIV  232 (758)
T ss_dssp             SSSSCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEcCCCCCHHHHHHHHHHHHH
Confidence            34577899999999999999999988763

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.51  E-value=0.013  Score=40.05  Aligned_cols=24  Identities=17%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..++|.|+.||||||.++.+...+
T Consensus         9 ~~~~~~G~pGsGKsT~a~~L~~~~   32 (230)
T 3gmt_A            9 MRLILLGAPGAGKGTQANFIKEKF   32 (230)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred             cceeeECCCCCCHHHHHHHHHHHh
Confidence            468899999999999999887755

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=95.51  E-value=0.01  Score=38.73  Aligned_cols=22  Identities=23%  Similarity=0.144  Sum_probs=19.0

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.++++|..|+|||++++.+.+
T Consensus        10 ~ki~i~G~~~~GKTsli~~l~~   31 (212)
T 2j0v_A           10 IKCVTVGDGAVGKTCMLICYTS   31 (212)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            3588999999999999987765

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=95.50  E-value=0.012  Score=41.41  Aligned_cols=28  Identities=29%  Similarity=0.483  Sum_probs=23.8

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+..++|.||+|+|||++++.+.....
T Consensus        23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~   50 (304)
T 1ojl_A           23 PSDATVLIHGDSGTGKELVARALHACSA   50 (304)
T ss_dssp             STTSCEEEESCTTSCHHHHHHHHHHHSS
T ss_pred             CCCCcEEEECCCCchHHHHHHHHHHhCc
Confidence            3467799999999999999999988653

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=95.50  E-value=0.0093  Score=46.39  Aligned_cols=30  Identities=30%  Similarity=0.368  Sum_probs=25.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...+..++|+|++|+||||+++.+++....
T Consensus         6 ~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~   35 (665)
T 2dy1_A            6 GAMIRTVALVGHAGSGKTTLTEALLYKTGA   35 (665)
T ss_dssp             CCCEEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred             cCCCcEEEEECCCCChHHHHHHHHHHhcCC
Confidence            455788999999999999999999876543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.49  E-value=0.0089  Score=41.62  Aligned_cols=24  Identities=21%  Similarity=0.318  Sum_probs=20.9

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      -.|+|+|..|+||||+++.+++.-
T Consensus        25 ~~I~vvG~~~~GKSTlln~l~g~~   48 (315)
T 1jwy_B           25 PQIVVVGSQSSGKSSVLENIVGRD   48 (315)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred             CeEEEEcCCCCCHHHHHHHHHCCC
Confidence            458899999999999999998753

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=95.49  E-value=0.0093  Score=41.23  Aligned_cols=23  Identities=22%  Similarity=0.221  Sum_probs=20.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++++|.+|+||||+++.+.+..
T Consensus         5 ~I~lvG~~n~GKSTLin~l~g~~   27 (274)
T 3i8s_A            5 TIGLIGNPNSGKTTLFNQLTGSR   27 (274)
T ss_dssp             EEEEEECTTSSHHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58899999999999999987754

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=95.49  E-value=0.01  Score=43.12  Aligned_cols=23  Identities=22%  Similarity=0.167  Sum_probs=20.6

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++|+|.+|+||||+++.+.+.-
T Consensus         3 ~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            3 AVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             SEEEECCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            37899999999999999998874

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=95.48  E-value=0.012  Score=41.04  Aligned_cols=24  Identities=21%  Similarity=0.374  Sum_probs=21.5

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..++|.|+.|+|||++++.+....
T Consensus        31 ~~v~i~G~~G~GKT~L~~~~~~~~   54 (357)
T 2fna_A           31 PITLVLGLRRTGKSSIIKIGINEL   54 (357)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhc
Confidence            689999999999999999887754

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=95.48  E-value=0.0086  Score=44.00  Aligned_cols=27  Identities=15%  Similarity=0.149  Sum_probs=22.8

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ...+..++|+|.+|+||||+++.+.+.
T Consensus        19 i~~~~kvgIVG~pnvGKSTL~n~Ltg~   45 (396)
T 2ohf_A           19 FGTSLKIGIVGLPNVGKSTFFNVLTNS   45 (396)
T ss_dssp             SSSCCCEEEECCSSSSHHHHHHHHHC-
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHCC
Confidence            345678999999999999999998875

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=95.48  E-value=0.0099  Score=40.80  Aligned_cols=22  Identities=23%  Similarity=0.241  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|.+|+||||+++.+.+.
T Consensus         7 kI~lvG~~nvGKTsL~n~l~g~   28 (258)
T 3a1s_A            7 KVALAGCPNVGKTSLFNALTGT   28 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHCC
Confidence            4889999999999999988764

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=95.46  E-value=0.0094  Score=44.15  Aligned_cols=28  Identities=29%  Similarity=0.534  Sum_probs=24.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..+++++|++|+||||++..++..+...
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~  126 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKR  126 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            3589999999999999999999887643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	114
d1w7ja2	730	c.37.1.9 (A:63-792) Myosin S1, motor domain {Chick	3e-41
d1d0xa2	712	c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain	4e-41
d1kk8a2	789	c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain	1e-40
d2mysa2	794	c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain	3e-40
d1br2a2	710	c.37.1.9 (A:80-789) Myosin S1, motor domain {Chick	1e-39
d1lkxa_	684	c.37.1.9 (A:) Myosin S1, motor domain {Dictyosteli	3e-39
d2bmfa2	305	c.37.1.14 (A:178-482) Dengue virus helicase {Dengu	2e-04
d1rz3a_	198	c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci	0.001
d1khta_	190	c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco	0.002
d1ny5a2	247	c.37.1.20 (A:138-384) Transcriptional activator si	0.002
d1a1va1	136	c.37.1.14 (A:190-325) HCV helicase domain {Human h	0.004

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} Length = 730

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

 Score =  141 bits (357), Expect = 3e-41
 Identities = 50/112 (44%), Positives = 75/112 (66%), Gaps = 2/112 (1%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +YG D++  Y GQ +G + PH+FA+   AY  +A    NQ +++SGESG+GKT   K  
Sbjct: 55  PIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYA 114

Query: 62  MQYLAAV-NKSPSNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           M+Y A V   +    + E++L ++P++ES GNAKT RNDNSSRFGK++++ F
Sbjct: 115 MRYFATVSGSASEANVEEKVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGF 166

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} Length = 712

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

 Score =  141 bits (356), Expect = 4e-41
 Identities = 55/117 (47%), Positives = 82/117 (70%), Gaps = 5/117 (4%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y  +MV  ++G+    ++PH+FAI   AY ++     NQ ++I+GESG+GKTE TK V
Sbjct: 86  PIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKV 145

Query: 62  MQYLAAVNKSP----SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE 114
           +QYLA+V        S ++ +QIL+A+P+LE+FGNAKT RN+NSSRFGKF+++ F  
Sbjct: 146 IQYLASVAGRNQANGSGVLEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNN 202

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} Length = 789

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

 Score =  140 bits (353), Expect = 1e-40
 Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 12/124 (9%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y   ++ KY G+    + PHLF++   AY  + T   NQ  +I+GESG+GKTE TK V
Sbjct: 82  PIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKV 141

Query: 62  MQYLAAVNKSPSNL-----------ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 110
           + YLA V  +               + +QI++A+P+LE++GNAKT RN+NSSRFGKF+++
Sbjct: 142 IMYLAKVACAVKKKDEEASDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRI 201

Query: 111 HFKE 114
           HF  
Sbjct: 202 HFGP 205

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 794

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score =  139 bits (350), Expect = 3e-40
 Identities = 55/124 (44%), Positives = 75/124 (60%), Gaps = 12/124 (9%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y   +V  Y G+      PH+F+I   AY  + T   NQ ++I+GESG+GKT  TK V
Sbjct: 84  PVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRV 143

Query: 62  MQYLAAVNKSP-----------SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQV 110
           +QY A +  S               + +QI+ A+PLLE+FGNAKTVRNDNSSRFGKF+++
Sbjct: 144 IQYFATIAASGEKKKEEQSGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRI 203

Query: 111 HFKE 114
           HF  
Sbjct: 204 HFGA 207

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} Length = 710

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

 Score =  137 bits (345), Expect = 1e-39
 Identities = 51/128 (39%), Positives = 79/128 (61%), Gaps = 16/128 (12%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
            +Y   ++  Y+G+    + PH++AI   AY ++     +Q ++ +GESG+GKTE TK V
Sbjct: 52  PIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKV 111

Query: 62  MQYLAAVNKSP---------------SNLITEQILEASPLLESFGNAKTVRNDNSSRFGK 106
           +QYLA V  S                   + +Q+L+A+P+LE+FGNAKTV+NDNSSRFGK
Sbjct: 112 IQYLAVVASSHKGKKDTSITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGK 171

Query: 107 FLQVHFKE 114
           F++++F  
Sbjct: 172 FIRINFDV 179

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} Length = 684

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

 Score =  136 bits (343), Expect = 3e-39
 Identities = 52/114 (45%), Positives = 82/114 (71%), Gaps = 4/114 (3%)

Query: 3   DMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALATSG-NQVVVISGESGSGKTECTKLV 61
           ++Y    +K Y G+    + PH++A+ + AY ++  S  NQ V+ISGESG+GKTE +K +
Sbjct: 47  NIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKI 106

Query: 62  MQYLAAVNKSPS---NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHF 112
           MQ+L  V+ + S     I++ +L+++PLLE+FGNAKT+RNDNSSRFGK++++ F
Sbjct: 107 MQFLTFVSSNQSPNGERISKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQF 160

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

 Score = 36.8 bits (84), Expect = 2e-04
 Identities = 8/49 (16%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 41 NQVVVISGESGSGKTECTKLVMQYLAAVNK------SPSNLITEQILEA 83
           ++ ++    G+GKT+     +   A          +P+ ++  ++ EA
Sbjct: 9  KRLTIMDLHPGAGKTKRYLPAIVREAIKRGLRTLILAPTRVVAAEMEEA 57

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 34.7 bits (78), Expect = 0.001
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 35 ALATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72
          A+ T+G  V+ I G S SGKT     + Q L     S 
Sbjct: 16 AIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISV 53

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

 Score = 33.8 bits (76), Expect = 0.002
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 41 NQVVVISGESGSGKTECTKLVMQYLAAVNKSP 72
          N+VVV++G  G G T  ++L M  L     + 
Sbjct: 1  NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 247

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 33.7 bits (77), Expect = 0.002
 Identities = 19/69 (27%), Positives = 26/69 (37%), Gaps = 1/69 (1%)

Query: 44  VVISGESGSGKTECTKLVMQYLAAVNKSPSNLITEQILEASPLLESFGNAKTVRND-NSS 102
           V+I+GESG GK    +L+ +      +    L    I       E FG  K       SS
Sbjct: 26  VLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS 85

Query: 103 RFGKFLQVH 111
           + G F    
Sbjct: 86  KEGFFELAD 94

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

 Score = 32.5 bits (73), Expect = 0.004
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 8/47 (17%)

Query: 41 NQVVVISGESGSGKTECTKLVMQYLA-----AVNKSPSNLITEQILE 82
           QV  +   +GSGK+     V    A      +  +PS   T     
Sbjct: 8  FQVAHLHAPTGSGKST---KVPAAYAAQGYKVLVLNPSVAATLGFGA 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	100.0
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	100.0
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	100.0
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	100.0
d2awna2	232	Maltose transport protein MalK, N-terminal domain	98.69
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	98.67
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	98.67
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	98.66
d1g2912	240	Maltose transport protein MalK, N-terminal domain	98.64
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	98.64
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	98.62
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	98.62
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	98.6
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.59
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	98.59
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	98.59
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	98.58
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	98.57
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	98.56
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	98.55
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	98.54
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	98.43
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	98.38
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	98.35
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	98.28
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	97.97
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.96
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.87
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	97.87
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	97.87
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.87
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.85
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.84
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.83
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.79
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.79
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.76
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.76
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	97.75
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.75
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.75
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.72
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.63
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.62
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	97.6
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	97.56
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	97.53
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.48
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.48
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	97.48
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.47
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.46
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.44
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	97.44
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.42
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.41
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	97.41
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	97.39
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.38
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.36
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.36
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.34
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.33
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.32
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	97.32
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	97.3
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.3
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	97.29
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	97.29
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	97.28
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	97.28
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	97.27
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.25
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	97.16
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	97.15
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.14
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	97.14
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	97.13
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.09
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	97.08
d1okkd2	207	GTPase domain of the signal recognition particle r	97.08
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	97.06
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.05
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	97.04
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	97.04
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	97.02
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	97.02
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	97.0
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.98
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.97
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.94
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.94
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	96.92
d1vmaa2	213	GTPase domain of the signal recognition particle r	96.91
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	96.91
d2qy9a2	211	GTPase domain of the signal recognition particle r	96.89
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.88
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	96.88
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.86
d1ls1a2	207	GTPase domain of the signal sequence recognition p	96.85
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	96.85
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	96.84
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	96.84
d1j8yf2	211	GTPase domain of the signal sequence recognition p	96.84
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	96.83
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	96.83
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	96.82
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.82
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.82
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.8
d1nrjb_	209	Signal recognition particle receptor beta-subunit	96.78
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.75
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	96.75
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	96.73
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	96.71
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	96.71
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	96.7
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	96.68
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	96.67
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	96.66
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	96.66
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	96.64
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	96.63
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	96.63
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	96.62
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	96.61
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.6
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	96.59
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.56
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	96.56
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	96.54
d2fh5b1	207	Signal recognition particle receptor beta-subunit	96.52
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	96.47
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	96.47
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	96.42
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	96.42
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.4
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	96.38
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	96.38
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	96.38
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	96.38
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	96.38
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	96.37
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	96.36
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	96.35
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	96.33
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.33
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.33
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	96.3
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	96.3
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	96.29
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	96.26
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	96.25
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	96.25
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	96.25
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	96.24
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	96.23
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	96.22
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	96.22
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	96.21
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	96.21
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	96.19
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	96.19
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.19
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	96.16
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	96.16
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	96.14
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	96.13
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	96.13
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	96.11
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	96.1
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	96.1
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	96.07
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	96.05
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	96.05
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	96.05
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.05
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	96.04
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	96.03
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	96.03
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	96.01
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	96.01
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	96.01
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	96.0
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	95.97
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	95.96
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	95.95
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	95.95
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	95.93
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	95.92
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	95.9
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	95.89
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	95.88
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	95.84
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	95.83
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	95.8
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.79
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	95.78
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	95.74
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.74
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	95.72
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	95.68
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	95.61
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	95.58
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	95.58
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.57
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	95.56
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	95.54
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.5
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	95.45
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.43
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	95.43
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	95.31
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	95.29
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	95.28
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	95.12
d1yksa1	140	YFV helicase domain {Yellow fever virus [TaxId: 11	95.03
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	94.97
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	94.93
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	94.7
d1xpua3	289	Transcription termination factor Rho, ATPase domai	94.62
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	94.55
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	94.47
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	94.47
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.4
d1tuea_	205	Replication protein E1 helicase domain {Human papi	94.35
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	94.2
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	94.13
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	94.04
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	93.95
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	93.73
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	93.58
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	93.48
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	93.48
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	93.46
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.45
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	93.28
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	93.25
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	93.24
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	93.13
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	93.13
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	93.07
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	93.03
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.96
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	92.96
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	92.82
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	92.78
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	92.75
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	92.74
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	92.68
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	92.36
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	92.34
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.29
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	92.27
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	91.67
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	91.63
d2bmfa2	305	Dengue virus helicase {Dengue virus type 2 [TaxId:	91.52
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	90.91
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	90.65
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	90.47
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	90.31
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	90.27
d2olra1	313	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.88
d1j3ba1	318	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.85
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	89.34
d1ii2a1	323	Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo	89.24
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	89.07
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	88.69
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.43
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	87.98
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	87.56
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	86.56
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	86.2
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	85.94
d1hyqa_	232	Cell division regulator MinD {Archaeon Archaeoglob	85.85
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	85.25
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	84.46
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	83.21
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	82.63
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	82.47
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	81.52
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	81.43
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	81.18
d1j6ua3	207	UDP-N-acetylmuramate-alanine ligase MurC {Thermoto	81.11
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	80.26

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=100.00  E-value=9.4e-36  Score=229.89  Aligned_cols=114  Identities=48%  Similarity=0.818  Sum_probs=105.0

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC----chh
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP----SNL   75 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~----~~~   75 (114)
                      +||+|+.+++..|+++...++|||||++++.||+.|.. ..+|+|+|+|+||||||+.++.+++++...++..    ...
T Consensus        84 ~l~iy~~~~~~~y~~~~~~~~~PHifaiA~~Ay~~m~~~~~nQsIiisGeSGaGKTe~~k~il~yL~~~s~~~~~~~~~~  163 (712)
T d1d0xa2          84 RIPIYTQEMVDIFKGRRRNEVAPHIFAISDVAYRSMLDDRQNQSLLITGESGAGKTENTKKVIQYLASVAGRNQANGSGV  163 (712)
T ss_dssp             CCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHSCC-----CH
T ss_pred             CCCCCCHHHHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCceEEEeCCCCCCHHHHHHHHHHHHHHHhCCCcccccch
Confidence            57999999999999999999999999999999999874 6799999999999999999999999998876533    235


Q ss_pred             HHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          76 ITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        76 ~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      ++++|.+++|||||||||||.+|+||||||||++|+|++
T Consensus       164 i~~~i~~~n~iLEAFGNAkT~~N~NSSRFGk~~~l~f~~  202 (712)
T d1d0xa2         164 LEQQILQANPILEAFGNAKTTRNNNSSRFGKFIEIQFNN  202 (712)
T ss_dssp             HHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECT
T ss_pred             HHHHHHhhhhHHHHhcCcCcCCCCCccceeEEEEEEEcC
Confidence            889999999999999999999999999999999999974

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=100.00  E-value=2.6e-35  Score=229.49  Aligned_cols=114  Identities=46%  Similarity=0.771  Sum_probs=104.3

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc------
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS------   73 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~------   73 (114)
                      ++|+|+.+++..|+++...++|||+|++++.||+.|.. ..+|+|+|+|+||||||+.++.+++++...++...      
T Consensus        80 ~l~iy~~~~~~~y~~~~~~~~~PHiyavA~~Ay~~m~~~~~nQ~IiisGESGaGKTe~~K~il~yL~~~~~~~~~~~~~~  159 (789)
T d1kk8a2          80 RLPIYTDSVIAKYRGKRKTEIPPHLFSVADNAYQNMVTDRENQSCLITGESGAGKTENTKKVIMYLAKVACAVKKKDEEA  159 (789)
T ss_dssp             CCSTTSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHHHHHHHHSCCCCCC----
T ss_pred             CCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhcccccccccc
Confidence            47999999999999999999999999999999999874 67999999999999999999999999987654321      


Q ss_pred             -----hhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          74 -----NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        74 -----~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                           ..++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       160 ~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGk~~~l~f~~  205 (789)
T d1kk8a2         160 SDKKEGSLEDQIIQANPVLEAYGNAKTTRNNNSSRFGKFIRIHFGP  205 (789)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHEECCSSCTTEESSEEEEEEEECT
T ss_pred             cccccccHHHHHHHHhHHHHhccccCCCCCCccCCcceeEEEEECC
Confidence                 24788999999999999999999999999999999999973

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=3.3e-35  Score=229.03  Aligned_cols=114  Identities=47%  Similarity=0.776  Sum_probs=104.4

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-------
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP-------   72 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~-------   72 (114)
                      +||+|+++++..|+++...++|||||++++.||+.|. ...+|+|+|+|+||||||+.++.+++++...++..       
T Consensus        82 ~l~ly~~~~~~~y~~~~~~~~pPHifaiA~~Ay~~m~~~~~~QsIiisGeSGaGKTe~~K~il~yL~~~~~~~~~~~~~~  161 (794)
T d2mysa2          82 WLPVYNPKVVLAYRGKKRQEAPPHIFSISDNAYQFMLTDRENQSILITGESGAGKTVNTKRVIQYFATIAASGEKKKEEQ  161 (794)
T ss_dssp             CCGGGCTTHHHHTTTCCTTSSCSCHHHHHHHHHHHHHHHTCCEEEEEEECTTSCHHHHHHHHHHHHHHHTCCCC------
T ss_pred             CCCCCCHHHHHHHcCCCCCCCCCcHHHHHHHHHHHHHHcCCCcEEEEEcCCCCCHHHHHHHHHHHHHHHcCCCCCccccc
Confidence            4799999999999999999999999999999999987 46799999999999999999999999998765432       


Q ss_pred             ----chhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          73 ----SNLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        73 ----~~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                          ...++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       162 ~~~~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~f~~  207 (794)
T d2mysa2         162 SGKMQGTLEDQIISANPLLEAFGNAKTVRNDNSSRFGKFIRIHFGA  207 (794)
T ss_dssp             -----CCHHHHHHHHHHHHHHHHEECCSSCSSEECSEEEEEEEECS
T ss_pred             cccccCcHHHHHHHhhhHHHHhcCCcccccCChhhhheeeeeEECC
Confidence                235889999999999999999999999999999999999973

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=100.00  E-value=1.6e-34  Score=222.38  Aligned_cols=114  Identities=45%  Similarity=0.797  Sum_probs=105.1

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhch-hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCch---hH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALA-TSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPSN---LI   76 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~-~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~~---~~   76 (114)
                      ++|+|+++++..|+++...++|||+|++++.||++|. ...+|+|+++|+||||||+.++.+++++...++....   .+
T Consensus        45 ~l~~y~~~~~~~y~~~~~~~~~PHif~iA~~Ay~~l~~~~~~QsIiisGeSGsGKTe~~k~il~yL~~~s~~~~~~~~~i  124 (684)
T d1lkxa_          45 NLNIYKESDIKAYNGRYKYEMPPHMYALANDAYRSMRQSQENQCVIISGESGAGKTEASKKIMQFLTFVSSNQSPNGERI  124 (684)
T ss_dssp             CCSCCSHHHHHHHSSCCGGGSCCCHHHHHHHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             CCCCCCHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHcCCCeEEEEEcCCCCCHHHHHHHHHHHHHHHcCCCCCccchH
Confidence            4799999999999999999999999999999999987 4679999999999999999999999999887654432   47


Q ss_pred             HHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          77 TEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        77 ~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      ++++.+++|||||||||||.+|+||||||||++|+|++
T Consensus       125 ~~~i~~~n~iLeaFGNAkT~~N~NSSRfgk~~~l~f~~  162 (684)
T d1lkxa_         125 SKMLLDSNPLLEAFGNAKTLRNDNSSRFGKYMEMQFNA  162 (684)
T ss_dssp             HHHHHHHHHHHHHHHBBCCSSCSSCBCSEEEEEEEECT
T ss_pred             HHHHHhhhhhhhhcccccccCCCCcCceeeEEEEEecC
Confidence            88999999999999999999999999999999999974

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=100.00  E-value=1e-34  Score=224.28  Aligned_cols=114  Identities=45%  Similarity=0.782  Sum_probs=103.2

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCCc------
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSPS------   73 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~~------   73 (114)
                      +||+|+.+++..|+++...++|||+|++++.||+.|.. ..+|+|+|+|+||||||+.+|.+++++...++...      
T Consensus        50 ~l~~y~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~m~~~~~~Q~IiisGeSGaGKTe~~k~il~yL~~~~~~~~~~~~~~  129 (710)
T d1br2a2          50 QLPIYSEKIIDMYKGKKRHEMPPHIYAIADTAYRSMLQDREDQSILCTGESGAGKTENTKKVIQYLAVVASSHKGKKDTS  129 (710)
T ss_dssp             CCTTCCHHHHHHTTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHHC---------
T ss_pred             CCCCCCHHHHHHHcCCCCCCCCChHHHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHHHhccCCCccccc
Confidence            47999999999999999999999999999999999884 67999999999999999999999999986543221      


Q ss_pred             ---------hhHHHHHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          74 ---------NLITEQILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        74 ---------~~~~~~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                               ..++++|.+++|||||||||||.+|+||||||||++|+|+.
T Consensus       130 ~~~~~~~~~~~i~~~i~~~n~iLeaFGnakT~~N~NSSRfgk~~~l~f~~  179 (710)
T d1br2a2         130 ITQGPSFSYGELEKQLLQANPILEAFGNAKTVKNDNSSRFGKFIRINFDV  179 (710)
T ss_dssp             ---------CHHHHHHTTHHHHHHHHHEECCSSCTTEESSEEEEEEEECT
T ss_pred             cccccccccchHHHHHHHHHHHHHHhCCCccCCCCCCCCcceeeeeEEcC
Confidence                     24789999999999999999999999999999999999973

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=100.00  E-value=2.8e-34  Score=222.37  Aligned_cols=114  Identities=45%  Similarity=0.834  Sum_probs=106.0

Q ss_pred             CCCCCCHHHHHHhhcCCCCCCCCeeeeehhhhhhhchh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC-chhHHH
Q psy7658           1 MYDMYGLDMVKKYEGQILGTLSPHLFAIGSAAYSALAT-SGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP-SNLITE   78 (114)
Q Consensus         1 ~l~iY~~~~~~~y~~~~~~~~~phiy~~~~~~~~~l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~-~~~~~~   78 (114)
                      ++|+|+.+++..|+++...++|||+|++++.||+.|.. ..+|+|+|+|+||||||+..+.+++++...++.. ...+++
T Consensus        53 ~~~~y~~~~~~~y~~~~~~~~~PHif~vA~~Ay~~l~~~~~~Q~IiisGeSGsGKTe~~k~il~~l~~~s~~~~~~~~~~  132 (730)
T d1w7ja2          53 QLPIYGEDIINAYSGQNMGDMDPHIFAVAEEAYKQMARDERNQSIIVSGESGAGKTVSAKYAMRYFATVSGSASEANVEE  132 (730)
T ss_dssp             CCSCCSHHHHHHHTTCCGGGSCCCHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHHHHHHHTCCSSSSCHHH
T ss_pred             CCCCCCHHHHHHHcCCCcCCCCCcHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCCccccHHH
Confidence            47999999999999999999999999999999999874 6799999999999999999999999998887654 346899


Q ss_pred             HHhhhchHHHhhCCcccCCCCCCCCceeeEEEEecC
Q psy7658          79 QILEASPLLESFGNAKTVRNDNSSRFGKFLQVHFKE  114 (114)
Q Consensus        79 ~i~~~~~ileafg~a~t~~n~nssr~~~~~~l~f~~  114 (114)
                      ++.+++|||||||||||..|+||||||||++|+|++
T Consensus       133 ~i~~~n~ileaFGnAkT~~N~NSSRfgk~~~l~f~~  168 (730)
T d1w7ja2         133 KVLASNPIMESIGNAKTTRNDNSSRFGKYIEIGFDK  168 (730)
T ss_dssp             HHHHHHHHHHHHHEECCSSCTTEECSEEEEEEEECT
T ss_pred             HHHHHHHHHHHhcccccCCCCCcccceeeeeeeecC
Confidence            999999999999999999999999999999999974

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.69  E-value=2.3e-09  Score=72.08  Aligned_cols=37  Identities=22%  Similarity=0.329  Sum_probs=33.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|||||||||+++++.+++.+.+|..
T Consensus        21 l~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I   57 (232)
T d2awna2          21 LDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL   57 (232)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEE
Confidence            5578999999999999999999999999998887754

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.67  E-value=2.7e-09  Score=72.04  Aligned_cols=37  Identities=22%  Similarity=0.354  Sum_probs=33.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.++++++|+|||||||||+++++.+++.+.+|..
T Consensus        27 l~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I   63 (239)
T d1v43a3          27 LTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRI   63 (239)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             EEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEE
Confidence            5578999999999999999999999999999887754

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=98.67  E-value=1.5e-09  Score=71.45  Aligned_cols=37  Identities=27%  Similarity=0.398  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.+|++++|+|||||||||+++++++++.+..|+.
T Consensus        22 ~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I   58 (200)
T d1sgwa_          22 MTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI   58 (200)
T ss_dssp             EEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEE
Confidence            5578999999999999999999999999999887754

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.66  E-value=2e-09  Score=72.31  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|||||||||+++++.++..+.+|+.
T Consensus        26 l~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I   62 (230)
T d1l2ta_          26 LNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEV   62 (230)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCcchhhHhccCCCCCCccee
Confidence            5578999999999999999999999999999887754

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=98.64  E-value=3.8e-09  Score=71.35  Aligned_cols=37  Identities=19%  Similarity=0.338  Sum_probs=33.3

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.++++++|+|||||||||+++++.+++.+.+|..
T Consensus        24 l~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I   60 (240)
T d1g2912          24 LEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI   60 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             eEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEE
Confidence            5578999999999999999999999999998887654

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=98.64  E-value=2.3e-09  Score=71.99  Aligned_cols=37  Identities=24%  Similarity=0.340  Sum_probs=33.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.++++++|+|||||||||+++++.+++.+.+|+.
T Consensus        21 ~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I   57 (229)
T d3d31a2          21 LKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI   57 (229)
T ss_dssp             EEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEE
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEE
Confidence            5578999999999999999999999999999888754

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=98.62  E-value=5e-09  Score=70.79  Aligned_cols=37  Identities=19%  Similarity=0.394  Sum_probs=33.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+++.++|+|+|||||||+++++++++.+..|..
T Consensus        23 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I   59 (242)
T d1mv5a_          23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI   59 (242)
T ss_dssp             EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEE
Confidence            5578999999999999999999999999999988764

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=98.62  E-value=3.1e-09  Score=71.77  Aligned_cols=37  Identities=24%  Similarity=0.278  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|||||||||+++++.++..+.+|..
T Consensus        26 l~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I   62 (240)
T d3dhwc1          26 LHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSV   62 (240)
T ss_dssp             EEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCce
Confidence            5578999999999999999999999999999887754

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=98.60  E-value=3.7e-09  Score=71.40  Aligned_cols=37  Identities=24%  Similarity=0.351  Sum_probs=33.7

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|||||||||+++++.+++.+.+|+.
T Consensus        27 ~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I   63 (240)
T d1ji0a_          27 LKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI   63 (240)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEE
Confidence            5578999999999999999999999999999887754

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.59  E-value=4.4e-09  Score=71.07  Aligned_cols=37  Identities=35%  Similarity=0.512  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|+.++|+|+|||||||+++++++++.+..|..
T Consensus        24 l~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I   60 (241)
T d2pmka1          24 LSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV   60 (241)
T ss_dssp             EEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEE
Confidence            5678999999999999999999999999999887754

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.59  E-value=4.9e-09  Score=71.28  Aligned_cols=37  Identities=24%  Similarity=0.416  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+++.++|+|+|||||||+++++++++.+..|..
T Consensus        36 l~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I   72 (253)
T d3b60a1          36 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI   72 (253)
T ss_dssp             EEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEE
Confidence            5578999999999999999999999999999887654

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=5.5e-09  Score=70.95  Aligned_cols=37  Identities=19%  Similarity=0.334  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|+.++|+|+|||||||+++++++++.+..|..
T Consensus        35 l~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I   71 (251)
T d1jj7a_          35 FTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL   71 (251)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEE
Confidence            5578999999999999999999999999999887754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=98.58  E-value=5.1e-09  Score=70.62  Aligned_cols=37  Identities=14%  Similarity=0.308  Sum_probs=33.5

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+||+||||||+++++++++.+..|+.
T Consensus        23 ~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i   59 (238)
T d1vpla_          23 FEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV   59 (238)
T ss_dssp             EEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             eEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEE
Confidence            5578999999999999999999999999999887754

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.57  E-value=3.4e-09  Score=71.65  Aligned_cols=37  Identities=19%  Similarity=0.251  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|||||||||+++++.++..+.+|+.
T Consensus        26 l~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I   62 (242)
T d1oxxk2          26 INIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL   62 (242)
T ss_dssp             EEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEE
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceE
Confidence            5578899999999999999999999999998887753

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.56  E-value=8.4e-09  Score=71.07  Aligned_cols=36  Identities=31%  Similarity=0.448  Sum_probs=32.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      |.+.+|++++|+|+|||||||+++++++++.+..|.
T Consensus        57 l~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~   92 (281)
T d1r0wa_          57 LNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGI   92 (281)
T ss_dssp             EEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEE
T ss_pred             EEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcE
Confidence            447899999999999999999999999999888664

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.55  E-value=6.6e-09  Score=70.63  Aligned_cols=37  Identities=24%  Similarity=0.428  Sum_probs=33.6

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+|++++|+|||||||||+++++.+++.+.+|+.
T Consensus        25 ~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I   61 (254)
T d1g6ha_          25 ISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV   61 (254)
T ss_dssp             CEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEE
Confidence            5578999999999999999999999999999887754

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.54  E-value=8.2e-09  Score=70.33  Aligned_cols=41  Identities=22%  Similarity=0.288  Sum_probs=34.9

Q ss_pred             hhhh--chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          32 AYSA--LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        32 ~~~~--l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +.+.  |.+.+|++++|+|+|||||||+++++.+++.+.+|..
T Consensus        17 al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I   59 (258)
T d1b0ua_          17 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI   59 (258)
T ss_dssp             EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEE
T ss_pred             EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCE
Confidence            4444  5578999999999999999999999999998876653

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.43  E-value=1.2e-08  Score=69.32  Aligned_cols=37  Identities=22%  Similarity=0.374  Sum_probs=33.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      |.+.+++.++|+|+|||||||+++++++++.+..|..
T Consensus        39 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I   75 (255)
T d2hyda1          39 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQI   75 (255)
T ss_dssp             EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEE
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcccccc
Confidence            4578999999999999999999999999999887754

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.38  E-value=4.6e-08  Score=65.89  Aligned_cols=32  Identities=19%  Similarity=0.305  Sum_probs=28.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhhCCCC
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAVNKSP   72 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~~   72 (114)
                      +++++|+|||||||||+++++.+++.+..|+.
T Consensus        24 ~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I   55 (240)
T d2onka1          24 RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEV   55 (240)
T ss_dssp             SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEE
T ss_pred             CEEEEEECCCCChHHHHHHHHHcCCCCCceEE
Confidence            47999999999999999999999999887754

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=5.4e-08  Score=65.13  Aligned_cols=35  Identities=14%  Similarity=0.205  Sum_probs=29.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCCC
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAVNKS   71 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g~   71 (114)
                      +.+.+|++++|+|+|||||||+++.+.++. +..|+
T Consensus        20 l~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~   54 (231)
T d1l7vc_          20 GEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGS   54 (231)
T ss_dssp             EEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSE
T ss_pred             EEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceE
Confidence            567899999999999999999999999965 34443

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=98.28  E-value=2.1e-07  Score=58.53  Aligned_cols=28  Identities=32%  Similarity=0.504  Sum_probs=24.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      .++|+||+|+||||+++.+++.+.+..|
T Consensus         2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g   29 (178)
T d1ye8a1           2 KIIITGEPGVGKTTLVKKIVERLGKRAI   29 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred             EEEEECCCCcHHHHHHHHHHhcCCCCcc
Confidence            3789999999999999999999987643

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.97  E-value=3e-06  Score=52.63  Aligned_cols=29  Identities=17%  Similarity=0.262  Sum_probs=25.6

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+|.+|.|+|.+||||||+++.+...+..
T Consensus         4 ~~g~~I~l~G~~GsGKTTia~~La~~L~~   32 (183)
T d1m8pa3           4 TQGFTIFLTGYMNSGKDAIARALQVTLNQ   32 (183)
T ss_dssp             TCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            45788999999999999999999988754

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.96  E-value=3.4e-06  Score=52.18  Aligned_cols=26  Identities=31%  Similarity=0.381  Sum_probs=23.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +++|+|++||||||+++.++..+...
T Consensus         4 vi~itG~~GSGKTTL~~~L~~~l~~~   29 (170)
T d1np6a_           4 LLAFAAWSGTGKTTLLKKLIPALCAR   29 (170)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence            68999999999999999999887654

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.87  E-value=5.3e-06  Score=52.64  Aligned_cols=26  Identities=31%  Similarity=0.519  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      |++++|+||+|+||+|+++.+...+.
T Consensus         2 G~iivl~GpsG~GK~tl~~~L~~~~~   27 (182)
T d1znwa1           2 GRVVVLSGPSAVGKSTVVRCLRERIP   27 (182)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence            67899999999999999999887654

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=5.9e-06  Score=51.20  Aligned_cols=27  Identities=33%  Similarity=0.490  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...+++|+|++||||||+++.+...+.
T Consensus         5 ~~~iivl~G~~GsGKsT~a~~La~~l~   31 (171)
T d1knqa_           5 DHHIYVLMGVSGSGKSAVASEVAHQLH   31 (171)
T ss_dssp             TSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence            467899999999999999999988763

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=97.87  E-value=5.8e-06  Score=51.20  Aligned_cols=26  Identities=19%  Similarity=0.485  Sum_probs=23.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .++|+|.|++||||||+++.+...+.
T Consensus         3 ~kiI~l~G~~GsGKsTva~~L~~~l~   28 (178)
T d1qhxa_           3 TRMIILNGGSSAGKSGIVRCLQSVLP   28 (178)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence            57899999999999999999998864

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.87  E-value=5.3e-06  Score=50.56  Aligned_cols=25  Identities=24%  Similarity=0.436  Sum_probs=22.0

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..|+|+|++|+||||+++.+...+.
T Consensus         3 k~I~l~G~~GsGKSTvak~La~~L~   27 (169)
T d1kaga_           3 RNIFLVGPMGAGKSTIGRQLAQQLN   27 (169)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhC
Confidence            4688999999999999999988763

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.85  E-value=7.2e-06  Score=50.89  Aligned_cols=28  Identities=25%  Similarity=0.375  Sum_probs=24.7

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~~~   69 (114)
                      +.|.|+|++|+||||+++.++..+...+
T Consensus         2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~   29 (189)
T d2i3ba1           2 RHVFLTGPPGVGKTTLIHKASEVLKSSG   29 (189)
T ss_dssp             CCEEEESCCSSCHHHHHHHHHHHHHHTT
T ss_pred             cEEEEECCCCCcHHHHHHHHHHHHHHCC
Confidence            4689999999999999999999987654

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.84  E-value=6.2e-06  Score=52.59  Aligned_cols=28  Identities=29%  Similarity=0.378  Sum_probs=24.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .....+|+|+|++||||||.++.++..+
T Consensus         3 ~~kp~iI~i~G~pGSGKsT~a~~La~~~   30 (194)
T d1qf9a_           3 KSKPNVVFVLGGPGSGKGTQCANIVRDF   30 (194)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3456789999999999999999998865

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.83  E-value=1e-05  Score=50.42  Aligned_cols=28  Identities=39%  Similarity=0.620  Sum_probs=24.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +.+|+|.|++||||||+++.+...+...
T Consensus         1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~   28 (190)
T d1khta_           1 NKVVVVTGVPGVGSTTSSQLAMDNLRKE   28 (190)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            4689999999999999999998887544

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.79  E-value=6.8e-06  Score=51.06  Aligned_cols=26  Identities=23%  Similarity=0.300  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...|+|+|++|+||||+++.+...+.
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~~~   32 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAVFN   32 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            36799999999999999999988763

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.79  E-value=5.4e-06  Score=51.48  Aligned_cols=26  Identities=27%  Similarity=0.588  Sum_probs=23.0

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .+++|+|.|++||||||+++.+...+
T Consensus         3 ~g~iI~l~G~~GsGKSTia~~La~~l   28 (176)
T d1zp6a1           3 GGNILLLSGHPGSGKSTIAEALANLP   28 (176)
T ss_dssp             TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999999887654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.76  E-value=1.1e-05  Score=50.93  Aligned_cols=28  Identities=36%  Similarity=0.310  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .-+|+|.|++||||||+++.+...+...
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~~~l~~~   49 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLSQTLREQ   49 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhccc
Confidence            4467899999999999999998877643

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.76  E-value=9.4e-06  Score=50.12  Aligned_cols=23  Identities=26%  Similarity=0.387  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|+|++||||||+++.+...+
T Consensus         6 ~I~i~G~pGsGKTTia~~La~~l   28 (173)
T d1rkba_           6 NILLTGTPGVGKTTLGKELASKS   28 (173)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998765

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=5.2e-06  Score=52.44  Aligned_cols=28  Identities=32%  Similarity=0.487  Sum_probs=24.4

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .|.+|.|+|++||||||+++.+...+..
T Consensus        18 ~g~vI~L~G~pGSGKTTiAk~La~~l~~   45 (195)
T d1x6va3          18 RGCTVWLTGLSGAGKTTVSMALEEYLVC   45 (195)
T ss_dssp             CCEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            4678999999999999999999887743

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.75  E-value=9.4e-06  Score=49.44  Aligned_cols=24  Identities=21%  Similarity=0.389  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ++|+++|++||||||+++.+....
T Consensus         3 klIii~G~pGsGKTTla~~L~~~~   26 (152)
T d1ly1a_           3 KIILTIGCPGSGKSTWAREFIAKN   26 (152)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred             EEEEEECCCCCCHHHHHHHHHHhC
Confidence            578999999999999999776543

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.75  E-value=1.3e-05  Score=49.86  Aligned_cols=28  Identities=21%  Similarity=0.115  Sum_probs=24.6

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~~~   69 (114)
                      ++++|+|.+||||||++..++..+...+
T Consensus         2 kii~I~G~~gSGKTTli~~l~~~L~~~g   29 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVAAAVREG   29 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred             cEEEEEeCCCCCHHHHHHHHHHHHHhCC
Confidence            4688999999999999999999887654

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.72  E-value=1.1e-05  Score=49.58  Aligned_cols=25  Identities=28%  Similarity=0.503  Sum_probs=22.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..|+|+|++||||||+++.+...+.
T Consensus         3 klI~i~G~~GsGKTTva~~L~~~~~   27 (176)
T d2bdta1           3 KLYIITGPAGVGKSTTCKRLAAQLD   27 (176)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHcC
Confidence            5789999999999999999988763

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.63  E-value=2.3e-05  Score=48.48  Aligned_cols=27  Identities=26%  Similarity=0.495  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+-.|+|+|++||||||+++.+...+.
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~~l~   30 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAAELD   30 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence            356799999999999999999988763

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=2.2e-05  Score=51.09  Aligned_cols=26  Identities=19%  Similarity=0.395  Sum_probs=22.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|.+++|+||||+||+|+.+.++...
T Consensus         1 ~G~livi~GPSG~GK~tl~~~L~~~~   26 (205)
T d1s96a_           1 QGTLYIVSAPSGAGKSSLIQALLKTQ   26 (205)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHhhC
Confidence            36789999999999999999887764

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=2.2e-05  Score=50.65  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=21.6

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +|+|.|++||||||+++.+...+.
T Consensus         4 iIgI~G~~gSGKSTla~~L~~~l~   27 (213)
T d1uj2a_           4 LIGVSGGTASGKSSVCAKIVQLLG   27 (213)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhc
Confidence            688999999999999999888764

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.56  E-value=5.5e-05  Score=49.24  Aligned_cols=55  Identities=24%  Similarity=0.280  Sum_probs=36.5

Q ss_pred             HHHhhcCCCCCCCCeeeeehhhhhhh-chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          10 VKKYEGQILGTLSPHLFAIGSAAYSA-LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        10 ~~~y~~~~~~~~~phiy~~~~~~~~~-l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+|+.....++.-|-- +. +.++. +....-..+++.||+|+|||++++.++..+.
T Consensus        15 ~~ky~P~~~~diig~~~-~~-~~l~~~i~~~~~~~lll~Gp~G~GKTtla~~iak~l~   70 (231)
T d1iqpa2          15 VEKYRPQRLDDIVGQEH-IV-KRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELF   70 (231)
T ss_dssp             HHHTCCCSTTTCCSCHH-HH-HHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHccCcHH-HH-HHHHHHHHcCCCCeEEEECCCCCcHHHHHHHHHHHHH
Confidence            57788777777653321 11 12222 2333445689999999999999999988653

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=97.53  E-value=3.2e-05  Score=48.31  Aligned_cols=25  Identities=20%  Similarity=0.388  Sum_probs=21.6

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.|+++|++||||||..+.++..+.
T Consensus         3 ~~Iil~G~~GsGKSTia~~LA~~Lg   27 (170)
T d1e6ca_           3 EPIFMVGARGCGMTTVGRELARALG   27 (170)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHHHT
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHhC
Confidence            5578999999999999999987763

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.48  E-value=4.1e-05  Score=48.48  Aligned_cols=26  Identities=31%  Similarity=0.348  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...|+|.|++||||||.++.+...+.
T Consensus         3 Pm~I~i~GppGsGKsT~a~~La~~~~   28 (189)
T d1zaka1           3 PLKVMISGAPASGKGTQCELIKTKYQ   28 (189)
T ss_dssp             SCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHC
Confidence            35688999999999999999888773

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.48  E-value=3.9e-05  Score=48.80  Aligned_cols=25  Identities=20%  Similarity=0.353  Sum_probs=22.7

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      -.+|+|+|++||||||.++.+...+
T Consensus         8 ~~iI~i~GppGSGKsT~a~~La~~~   32 (196)
T d1ukza_           8 VSVIFVLGGPGAGKGTQCEKLVKDY   32 (196)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHh
Confidence            4689999999999999999998876

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=97.48  E-value=4e-05  Score=47.65  Aligned_cols=22  Identities=32%  Similarity=0.477  Sum_probs=20.5

Q ss_pred             EEEEcCCCCchHHHHHHHHHHh
Q psy7658          44 VVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      |+|+|++||||||+.+.+...+
T Consensus         3 I~liG~~GsGKsTi~k~La~~l   24 (161)
T d1viaa_           3 IVFIGFMGSGKSTLARALAKDL   24 (161)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            7889999999999999998887

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.47  E-value=3.7e-05  Score=48.88  Aligned_cols=24  Identities=38%  Similarity=0.523  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      -|+|+||+|+||+|+++.++..+.
T Consensus         3 pIvl~GpsG~GK~tl~~~L~~~~~   26 (186)
T d1gkya_           3 PIVISGPSGTGKSTLLKKLFAEYP   26 (186)
T ss_dssp             CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred             eEEEECCCCCCHHHHHHHHHHhCC
Confidence            488999999999999999887653

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.46  E-value=4.1e-05  Score=48.89  Aligned_cols=23  Identities=43%  Similarity=0.579  Sum_probs=20.5

Q ss_pred             EEEEcCCCCchHHHHHHHHHHhh
Q psy7658          44 VVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      |+|+||+|+||+|+++.++..+.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~~~   25 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQEHS   25 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHHhCC
Confidence            78999999999999999887654

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=5.1e-05  Score=48.14  Aligned_cols=24  Identities=17%  Similarity=0.386  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..++|+||||+||+|+++.+++..
T Consensus         4 k~ivl~Gpsg~GK~tl~~~L~~~~   27 (178)
T d1kgda_           4 KTLVLLGAHGVGRRHIKNTLITKH   27 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred             CcEEEECCCCCCHHHHHHHHHHhC
Confidence            579999999999999999888654

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=97.44  E-value=4.8e-05  Score=47.38  Aligned_cols=26  Identities=23%  Similarity=0.420  Sum_probs=22.5

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+++|.|++|+||||.++.+...+..
T Consensus         2 kiivi~G~~GsGKTT~~~~La~~L~~   27 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVKEILDN   27 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHHHHHT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            36789999999999999999888753

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=5.2e-05  Score=47.07  Aligned_cols=22  Identities=32%  Similarity=0.489  Sum_probs=19.8

Q ss_pred             EEEEcCCCCchHHHHHHHHHHh
Q psy7658          44 VVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      |+++|++||||||+.+.+...+
T Consensus         4 IvliG~~G~GKSTig~~La~~l   25 (165)
T d2iyva1           4 AVLVGLPGSGKSTIGRRLAKAL   25 (165)
T ss_dssp             EEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHh
Confidence            6677999999999999998876

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.41  E-value=6e-05  Score=47.08  Aligned_cols=23  Identities=22%  Similarity=0.356  Sum_probs=20.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|.|++||||||.++.++..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAAY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998776

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.41  E-value=6.1e-05  Score=47.89  Aligned_cols=27  Identities=22%  Similarity=0.432  Sum_probs=24.0

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +...+|+|.|++||||||.++.++..+
T Consensus         6 ~~~~iI~l~G~pGSGKsT~a~~La~~~   32 (194)
T d3adka_           6 KKSKIIFVVGGPGSGKGTQCEKIVQKY   32 (194)
T ss_dssp             HTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            456889999999999999999988865

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.39  E-value=0.00014  Score=47.08  Aligned_cols=54  Identities=19%  Similarity=0.267  Sum_probs=35.0

Q ss_pred             HHHhhcCCCCCCCCeeeeehhhhhhhc-hhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          10 VKKYEGQILGTLSPHLFAIGSAAYSAL-ATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        10 ~~~y~~~~~~~~~phiy~~~~~~~~~l-~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +.+|+.....++.=|--  .-+.++.+ ....-..+++.||+|+||||+++.++..+
T Consensus         3 ~~ky~P~~~~diig~~~--~~~~l~~~i~~~~~~~lll~Gp~G~GKTtl~~~i~~~l   57 (237)
T d1sxjd2           3 VEKYRPKNLDEVTAQDH--AVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL   57 (237)
T ss_dssp             HHHTCCSSTTTCCSCCT--THHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred             chhhCCCCHHHccCcHH--HHHHHHHHHHcCCCCeEEEECCCCCChHHHHHHHHHHH
Confidence            46788777777642211  11233332 22223448899999999999999998875

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.38  E-value=6.7e-05  Score=47.65  Aligned_cols=26  Identities=31%  Similarity=0.479  Sum_probs=23.0

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+|+++|.+|+||||+++.+...+..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~~l~~   28 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTRYLNF   28 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            56899999999999999999987754

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=7.2e-05  Score=47.33  Aligned_cols=24  Identities=25%  Similarity=0.385  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      -+|+|.|++||||||.++.++..+
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~~~   25 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVEKY   25 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHHh
Confidence            368899999999999999998865

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.36  E-value=7.1e-05  Score=48.58  Aligned_cols=24  Identities=46%  Similarity=0.632  Sum_probs=21.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +++|+|+.||||||+++.+++++.
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~~~~   25 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGRYLE   25 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHHh
Confidence            688999999999999999987764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.34  E-value=6.5e-05  Score=47.34  Aligned_cols=25  Identities=28%  Similarity=0.383  Sum_probs=21.3

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      ...++|+++|++||||||+++.++.
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHH
Confidence            4568999999999999999986654

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.33  E-value=8.4e-05  Score=46.61  Aligned_cols=23  Identities=26%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|.|++||||||.++.+...+
T Consensus         2 ~I~i~G~pGsGKsT~a~~La~~~   24 (181)
T d2cdna1           2 RVLLLGPPGAGKGTQAVKLAEKL   24 (181)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998876

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.32  E-value=8.9e-05  Score=46.59  Aligned_cols=23  Identities=22%  Similarity=0.393  Sum_probs=21.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|.|++||||||.++.++..+
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~~   24 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEKY   24 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHH
Confidence            47899999999999999998877

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.32  E-value=3.7e-05  Score=48.82  Aligned_cols=29  Identities=31%  Similarity=0.393  Sum_probs=24.4

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+..-+|+|.|..||||||+++.+...+.
T Consensus         6 ~~kp~~I~ieG~~GsGKTTl~~~L~~~l~   34 (197)
T d2vp4a1           6 GTQPFTVLIEGNIGSGKTTYLNHFEKYKN   34 (197)
T ss_dssp             TCCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence            34556899999999999999999887763

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.30  E-value=9.3e-05  Score=47.61  Aligned_cols=24  Identities=25%  Similarity=0.520  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .|+|.||+||||||.++.+...+.
T Consensus         5 ~IaIdGp~GsGKgT~ak~La~~lg   28 (223)
T d1q3ta_           5 QIAIDGPASSGKSTVAKIIAKDFG   28 (223)
T ss_dssp             EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred             EEEEECCCCCCHHHHHHHHHHHhC
Confidence            577889999999999999998774

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.30  E-value=0.00011  Score=46.37  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=21.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +-.|+|+|++||||||.++.+...+
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~~   27 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKNF   27 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHHh
Confidence            4467789999999999999998766

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.29  E-value=0.00012  Score=47.97  Aligned_cols=43  Identities=16%  Similarity=0.160  Sum_probs=32.7

Q ss_pred             CeeeeehhhhhhhchhcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          23 PHLFAIGSAAYSALATSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        23 phiy~~~~~~~~~l~~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      |.-|...+.....+....+++++|.|+.|+|||++++.++..+
T Consensus        11 ~~~f~GR~~el~~l~~~~~~~i~i~G~~G~GKTsLl~~~~~~~   53 (283)
T d2fnaa2          11 RKDFFDREKEIEKLKGLRAPITLVLGLRRTGKSSIIKIGINEL   53 (283)
T ss_dssp             GGGSCCCHHHHHHHHHTCSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred             hhhCCChHHHHHHHHhccCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence            4445555556666666667899999999999999999877654

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=97.29  E-value=9.5e-05  Score=48.67  Aligned_cols=26  Identities=23%  Similarity=0.433  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...+++.||+|+|||++++.+++.+.
T Consensus        32 P~~ilL~GpPGtGKT~la~~la~~~~   57 (273)
T d1gvnb_          32 PTAFLLGGQPGSGKTSLRSAIFEETQ   57 (273)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHhh
Confidence            45688999999999999999988764

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=9.9e-05  Score=47.23  Aligned_cols=25  Identities=36%  Similarity=0.529  Sum_probs=22.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      -+|+|.||+||||+|.++.+...+.
T Consensus         4 piI~I~GppGSGKgT~ak~La~~~g   28 (225)
T d1ckea_           4 PVITIDGPSGAGKGTLCKAMAEALQ   28 (225)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHhC
Confidence            3788999999999999999988774

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.28  E-value=0.00012  Score=47.52  Aligned_cols=55  Identities=24%  Similarity=0.288  Sum_probs=33.5

Q ss_pred             HHHhhcCCCCCCCCeeeeehhhhhhh-chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          10 VKKYEGQILGTLSPHLFAIGSAAYSA-LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        10 ~~~y~~~~~~~~~phiy~~~~~~~~~-l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.+||.....++.-|- .+. +.++. +....-..+++.||+|+||||+++.++..+.
T Consensus         6 ~eKyrP~~~~d~ig~~-~~~-~~L~~~~~~~~~~~~ll~Gp~G~GKTt~a~~la~~l~   61 (224)
T d1sxjb2           6 VEKYRPQVLSDIVGNK-ETI-DRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL   61 (224)
T ss_dssp             HHHTCCSSGGGCCSCT-HHH-HHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HhHhCCCCHHHhcCCH-HHH-HHHHHHHHcCCCCeEEEECCCCCCchhhHHHHHHHHh
Confidence            4567776666544221 011 11222 2222233488999999999999999887764

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=97.27  E-value=9.9e-05  Score=47.94  Aligned_cols=31  Identities=23%  Similarity=0.266  Sum_probs=26.4

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +....+.+|.++|.+||||||+++.+...+.
T Consensus        19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~   49 (208)
T d1m7ga_          19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV   49 (208)
T ss_dssp             HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             HhCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            4556788999999999999999999886653

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.25  E-value=0.00011  Score=45.90  Aligned_cols=23  Identities=17%  Similarity=0.393  Sum_probs=20.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|.|++||||||.++.+...+
T Consensus         2 ~I~i~G~pGSGKsT~~~~La~~~   24 (179)
T d1e4va1           2 RIILLGAPVAGKGTQAQFIMEKY   24 (179)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            47899999999999999998765

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=97.16  E-value=7.3e-05  Score=51.80  Aligned_cols=30  Identities=30%  Similarity=0.548  Sum_probs=25.5

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..+..++|+|++||||||+++.++.++.+.
T Consensus       164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~  193 (323)
T d1g6oa_         164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKE  193 (323)
T ss_dssp             HHTCCEEEEESTTSSHHHHHHHHGGGSCTT
T ss_pred             HhCCCEEEEeeccccchHHHHHHhhhcccc
Confidence            445669999999999999999999988653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=97.15  E-value=0.00015  Score=47.27  Aligned_cols=28  Identities=25%  Similarity=0.392  Sum_probs=23.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ...+++.||+|+|||++++.++..+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~~~~~   62 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASELQTN   62 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhccCCC
Confidence            3468899999999999999999887644

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.14  E-value=0.0002  Score=44.87  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=21.0

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      -.|+|.|+.||||||.++.+...+
T Consensus         3 mrIvl~G~pGSGKtT~a~~La~~~   26 (180)
T d1akya1           3 IRMVLIGPPGAGKGTQAPNLQERF   26 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHh
Confidence            457899999999999999998765

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=97.14  E-value=0.00015  Score=49.60  Aligned_cols=27  Identities=22%  Similarity=0.410  Sum_probs=23.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +...+++.||+|+|||++++.++..+.
T Consensus        48 ~~~~iLl~GPpG~GKT~lAkalA~~~~   74 (309)
T d1ofha_          48 TPKNILMIGPTGVGKTEIARRLAKLAN   74 (309)
T ss_dssp             CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred             CCceEEEECCCCCCHHHHHHHHhhccc
Confidence            457788999999999999999998763

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.13  E-value=0.00018  Score=47.08  Aligned_cols=27  Identities=33%  Similarity=0.437  Sum_probs=23.5

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...+++.||+|+|||++++.++..+..
T Consensus        52 ~~~lll~GPpG~GKTt~a~~la~~~~~   78 (253)
T d1sxja2          52 FRAAMLYGPPGIGKTTAAHLVAQELGY   78 (253)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHHHHHh
Confidence            357999999999999999999997643

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.09  E-value=0.00019  Score=45.62  Aligned_cols=24  Identities=25%  Similarity=0.374  Sum_probs=21.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      -.|+|+|++||||||.++.++..+
T Consensus         7 mrIiliG~PGSGKtT~a~~La~~~   30 (189)
T d2ak3a1           7 LRAAIMGAPGSGKGTVSSRITKHF   30 (189)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred             eeEEEECCCCCCHHHHHHHHHHHH
Confidence            468899999999999999998865

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=97.08  E-value=0.00024  Score=48.86  Aligned_cols=28  Identities=18%  Similarity=0.374  Sum_probs=24.2

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .-+|+|.|++||||||+++.+...+...
T Consensus        80 P~iIGIaG~sgSGKSTla~~L~~lL~~~  107 (308)
T d1sq5a_          80 PYIISIAGSVAVGKSTTARVLQALLSRW  107 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHHTTS
T ss_pred             CEEEEEeCCCCCCCcHHHHHHHHHHhhh
Confidence            4589999999999999999998888643

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=97.08  E-value=0.0003  Score=45.78  Aligned_cols=28  Identities=29%  Similarity=0.458  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+.+++++|++|+||||.+-.++.++..
T Consensus         5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~   32 (207)
T d1okkd2           5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN   32 (207)
T ss_dssp             SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999888877754

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=97.06  E-value=0.00018  Score=45.35  Aligned_cols=22  Identities=32%  Similarity=0.557  Sum_probs=19.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -+|+|+|.+||||||.++.+-.
T Consensus         4 ~IIgitG~~gSGKstva~~l~~   25 (191)
T d1uf9a_           4 IIIGITGNIGSGKSTVAALLRS   25 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999987754

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.05  E-value=0.00012  Score=48.33  Aligned_cols=27  Identities=22%  Similarity=0.310  Sum_probs=23.4

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      -.++..+++|+||+||||+++.+.+..
T Consensus        93 l~~kt~~~~G~SGVGKSTLiN~L~~~~  119 (225)
T d1u0la2          93 LKGKISTMAGLSGVGKSSLLNAINPGL  119 (225)
T ss_dssp             HSSSEEEEECSTTSSHHHHHHHHSTTC
T ss_pred             hcCCeEEEECCCCCCHHHHHHhhcchh
Confidence            368999999999999999999887644

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=97.04  E-value=0.00021  Score=43.10  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+++|++|+||||+++.+.+-
T Consensus         2 kivlvG~~~vGKSsLi~~l~~~   23 (160)
T d1r8sa_           2 RILMVGLDAAGKTTILYKLKLG   23 (160)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            3789999999999999987654

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00033  Score=45.28  Aligned_cols=29  Identities=21%  Similarity=0.422  Sum_probs=25.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .|..|+|.|+-||||||.++.+...+...
T Consensus         2 rG~lI~ieG~dGsGKsT~~~~L~~~L~~~   30 (209)
T d1nn5a_           2 RGALIVLEGVDRAGKSTQSRKLVEALCAA   30 (209)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred             CeeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            57789999999999999999999887543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.00029  Score=45.48  Aligned_cols=24  Identities=21%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+.+.||.|+|||++++.++..+.
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~l~   60 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALAREIY   60 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHHhh
Confidence            478999999999999999988753

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.00  E-value=0.00037  Score=44.63  Aligned_cols=29  Identities=31%  Similarity=0.555  Sum_probs=25.0

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +|..|+|-|.-||||||.++.+...+...
T Consensus         1 rgkfIviEG~dGsGKsT~~~~L~~~L~~~   29 (210)
T d4tmka_           1 RSKYIVIEGLEGAGKTTARNVVVETLEQL   29 (210)
T ss_dssp             CCCEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence            36789999999999999999999887543

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.98  E-value=0.0004  Score=45.23  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=23.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...++|.||+|+|||++++.++..+..
T Consensus        43 ~~~lll~GppGtGKT~l~~~l~~~l~~   69 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTLRKLWELYKD   69 (276)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred             CCceEEECCCCCCHHHHHHHHHHHHhc
Confidence            468999999999999999999988754

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.97  E-value=0.00027  Score=46.01  Aligned_cols=27  Identities=22%  Similarity=0.378  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      -..+++.||+|+|||++++.+++.+..
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~~~~   61 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHELGV   61 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence            346889999999999999999987643

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.94  E-value=0.00044  Score=46.23  Aligned_cols=29  Identities=24%  Similarity=0.241  Sum_probs=24.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ......+++.||+|+|||++++.++..+.
T Consensus        42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~   70 (256)
T d1lv7a_          42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK   70 (256)
T ss_dssp             -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred             CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence            34457799999999999999999998774

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.94  E-value=0.00025  Score=43.89  Aligned_cols=23  Identities=22%  Similarity=0.319  Sum_probs=19.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +|+++|++|+||||+++.+++.-
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999887643

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=96.92  E-value=0.00042  Score=49.11  Aligned_cols=32  Identities=25%  Similarity=0.429  Sum_probs=26.8

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +.....-.++++||+||||||++..++..+..
T Consensus       153 l~~~~~GliLvtGpTGSGKSTTl~~~l~~~~~  184 (401)
T d1p9ra_         153 LIKRPHGIILVTGPTGSGKSTTLYAGLQELNS  184 (401)
T ss_dssp             HHTSSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred             HHhhhhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence            33456788999999999999999999988753

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=96.91  E-value=0.0004  Score=45.36  Aligned_cols=29  Identities=21%  Similarity=0.367  Sum_probs=23.6

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ....+++++|++|+||||.+-.++.++..
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~~   37 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKMFVD   37 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34567899999999999998888877643

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.0005  Score=44.85  Aligned_cols=28  Identities=21%  Similarity=0.342  Sum_probs=23.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...+++++|++|+||||.+-.++..+..
T Consensus         8 ~p~vi~lvGptGvGKTTTiAKLA~~~~~   35 (211)
T d2qy9a2           8 APFVILMVGVNGVGKTTTIGKLARQFEQ   35 (211)
T ss_dssp             TTEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            3567889999999999999888877653

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=96.88  E-value=0.00035  Score=42.34  Aligned_cols=22  Identities=27%  Similarity=0.268  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .++++|.+|+||||+++.+.+-
T Consensus         7 kI~ivG~~~vGKSSLi~~~~~~   28 (169)
T d1upta_           7 RILILGLDGAGKTTILYRLQVG   28 (169)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999987653

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=96.88  E-value=0.00021  Score=48.74  Aligned_cols=27  Identities=19%  Similarity=0.394  Sum_probs=20.4

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      -+|+|+|.|||||||+++.+...+...
T Consensus         5 pIIgIaG~SGSGKTTva~~l~~i~~~~   31 (288)
T d1a7ja_           5 PIISVTGSSGAGTSTVKHTFDQIFRRE   31 (288)
T ss_dssp             CEEEEESCC---CCTHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence            489999999999999999988877543

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.86  E-value=0.00043  Score=43.22  Aligned_cols=28  Identities=18%  Similarity=0.190  Sum_probs=23.5

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++++.|.|++|+|||+++..++...
T Consensus        20 i~~G~v~~i~G~~GsGKT~l~l~la~~~   47 (242)
T d1n0wa_          20 IETGSITEMFGEFRTGKTQICHTLAVTC   47 (242)
T ss_dssp             EETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999987766543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=96.85  E-value=0.00058  Score=44.33  Aligned_cols=29  Identities=24%  Similarity=0.352  Sum_probs=23.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +..+++++|++|+||||.+-.++.++...
T Consensus         9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~~~   37 (207)
T d1ls1a2           9 DRNLWFLVGLQGSGKTTTAAKLALYYKGK   37 (207)
T ss_dssp             SSEEEEEECCTTTTHHHHHHHHHHHHHHT
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            34678899999999999998888777643

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.00039  Score=41.76  Aligned_cols=22  Identities=18%  Similarity=0.270  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+++|++|+|||++++.+.+-
T Consensus         2 KI~liG~~nvGKSSLln~l~~~   23 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKND   23 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999987763

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.84  E-value=0.00042  Score=47.18  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=22.5

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .-+|+|.|..||||||++..+...+..
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l~~~L~~   53 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQIYNHLME   53 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHHHHHHHH
Confidence            347889999999999999988776644

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=96.84  E-value=0.00033  Score=44.20  Aligned_cols=22  Identities=18%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+|+|.+|+||||+++.+.+.
T Consensus        25 ~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          25 EIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHhcCC
Confidence            4999999999999999999863

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=96.84  E-value=0.00056  Score=44.56  Aligned_cols=29  Identities=17%  Similarity=0.309  Sum_probs=19.9

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      +...+++++||+|+||||.+-.++..+..
T Consensus        10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~   38 (211)
T d1j8yf2          10 KIPYVIMLVGVQGTGKATTAGKLAYFYKK   38 (211)
T ss_dssp             SSSEEEEEECSCCC----HHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            34677889999999999998888877653

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=96.83  E-value=0.00037  Score=44.68  Aligned_cols=22  Identities=36%  Similarity=0.539  Sum_probs=18.5

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -+|+|+|..||||||.++.+..
T Consensus         3 ~iIgITG~igSGKStv~~~l~~   24 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTD   24 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3688999999999999886643

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.83  E-value=0.00037  Score=50.12  Aligned_cols=24  Identities=25%  Similarity=0.493  Sum_probs=22.2

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ..|+++||+|+|||.+++.+++.+
T Consensus        50 sNILliGPTGvGKTlLAr~LAk~l   73 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAKLA   73 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             ccEEEECCCCCCHHHHHHHHHHHh
Confidence            469999999999999999999977

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.82  E-value=0.00058  Score=43.27  Aligned_cols=25  Identities=24%  Similarity=0.404  Sum_probs=22.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .|+|.|.-||||||+++.+...+..
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~l~~   26 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGAFRA   26 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5889999999999999999987754

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.82  E-value=0.00059  Score=42.59  Aligned_cols=30  Identities=27%  Similarity=0.390  Sum_probs=26.3

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +++.++++.|+-|+||||+.|.+++.+...
T Consensus        31 ~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~   60 (158)
T d1htwa_          31 EKAIMVYLNGDLGAGKTTLTRGMLQGIGHQ   60 (158)
T ss_dssp             SSCEEEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred             CCCeEEEEecCCCccHHHHHHHHHhhcccc
Confidence            567899999999999999999999888554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.82  E-value=0.00069  Score=44.95  Aligned_cols=26  Identities=27%  Similarity=0.296  Sum_probs=22.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....+++.||+|+|||++++.+++.+
T Consensus        41 ~~~giLl~GppGtGKT~la~aia~~~   66 (247)
T d1ixza_          41 IPKGVLLVGPPGVGKTHLARAVAGEA   66 (247)
T ss_dssp             CCSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CCceEEEecCCCCChhHHHHHHHHHc
Confidence            34568999999999999999999765

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.80  E-value=0.00066  Score=45.13  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=24.1

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ......+.+.||+|+|||++++.++....
T Consensus        35 ~~~~~giLL~GppGtGKT~l~~ala~~~~   63 (258)
T d1e32a2          35 VKPPRGILLYGPPGTGKTLIARAVANETG   63 (258)
T ss_dssp             CCCCCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred             CCCCceeEEecCCCCCchHHHHHHHHHhC
Confidence            34456799999999999999999998653

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.78  E-value=0.0005  Score=43.46  Aligned_cols=23  Identities=30%  Similarity=0.453  Sum_probs=20.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ..|+|+|++|+||||+++.+.+.
T Consensus         4 p~V~lvG~~n~GKTSLln~l~~~   26 (209)
T d1nrjb_           4 PSIIIAGPQNSGKTSLLTLLTTD   26 (209)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            46899999999999999988764

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.75  E-value=0.00011  Score=48.71  Aligned_cols=28  Identities=25%  Similarity=0.414  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .++..+++|+||+||||+++.+++....
T Consensus        96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~  123 (231)
T d1t9ha2          96 QDKTTVFAGQSGVGKSSLLNAISPELGL  123 (231)
T ss_dssp             TTSEEEEEESHHHHHHHHHHHHCC----
T ss_pred             ccceEEEECCCCccHHHHHHhhccHhHh
Confidence            5788899999999999999988876533

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.75  E-value=0.00057  Score=45.30  Aligned_cols=26  Identities=23%  Similarity=0.231  Sum_probs=22.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...+++.||+|+|||++++.++..+.
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~~~~   65 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAEESN   65 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             CeEEEEECcCCCCHHHHHHHHhhccc
Confidence            34689999999999999999988753

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=96.73  E-value=0.00052  Score=44.11  Aligned_cols=21  Identities=29%  Similarity=0.563  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      +|+|+|..||||||.++.+..
T Consensus         5 iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           5 IVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            688999999999999987653

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=96.71  E-value=0.00046  Score=41.95  Aligned_cols=22  Identities=27%  Similarity=0.391  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+++|++|+||||+++.+.+.
T Consensus         3 kI~lvG~~nvGKSsLin~l~~~   24 (161)
T d2gj8a1           3 KVVIAGRPNAGKSSLLNALAGR   24 (161)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999988754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=96.71  E-value=0.00045  Score=42.86  Aligned_cols=22  Identities=18%  Similarity=0.302  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+|+|++|+||||+++.+.+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~   23 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGK   23 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999998764

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=96.68  E-value=0.00011  Score=45.78  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=21.3

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+.+|+|++||||||++..|.-.+.
T Consensus        25 ~~tvi~G~NGsGKStil~Ai~~~L~   49 (222)
T d1qhla_          25 LVTTLSGGNGAGKSTTMAAFVTALI   49 (222)
T ss_dssp             HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred             CeEEEECCCCCCHHHHHHHHHHHhc
Confidence            4778999999999999998876654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.67  E-value=0.0006  Score=42.39  Aligned_cols=22  Identities=23%  Similarity=0.348  Sum_probs=19.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+|+|.+|+||||+++.+++.
T Consensus         7 ~I~lvG~~~~GKSSLin~l~~~   28 (178)
T d1wf3a1           7 FVAIVGKPNVGKSTLLNNLLGV   28 (178)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999988764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.00082  Score=44.91  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=23.5

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .....+.+.||+|+|||++++.++..+
T Consensus        39 ~~~~giLL~Gp~GtGKT~l~~ala~~~   65 (265)
T d1r7ra3          39 TPSKGVLFYGPPGCGKTLLAKAIANEC   65 (265)
T ss_dssp             CCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCCCcchhHHHHHHHHh
Confidence            345679999999999999999998875

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0006  Score=42.09  Aligned_cols=22  Identities=18%  Similarity=0.336  Sum_probs=19.6

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+++|.+|+||||+++.+.+.
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4789999999999999999864

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=96.64  E-value=0.00063  Score=47.66  Aligned_cols=25  Identities=28%  Similarity=0.466  Sum_probs=22.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      -..+.++||+|+|||++++.++.++
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~~   92 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKHL   92 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred             CcceeeeCCCCccHHHHHHHHHhhc
Confidence            4558899999999999999998876

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.63  E-value=0.00089  Score=43.25  Aligned_cols=27  Identities=22%  Similarity=0.425  Sum_probs=24.3

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .|..|++-|.-||||||.++.+...+.
T Consensus         2 kGk~I~iEG~DGsGKST~~~~L~~~L~   28 (214)
T d1tmka_           2 RGKLILIEGLDRTGKTTQCNILYKKLQ   28 (214)
T ss_dssp             CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred             CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence            478899999999999999999988874

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.00054  Score=45.87  Aligned_cols=25  Identities=28%  Similarity=0.477  Sum_probs=20.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ....+|+|++|||||+++.++.-.+
T Consensus        24 ~~lnvlvG~NgsGKS~iL~Ai~~~l   48 (308)
T d1e69a_          24 DRVTAIVGPNGSGKSNIIDAIKWVF   48 (308)
T ss_dssp             SSEEEEECCTTTCSTHHHHHHHHTS
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHHh
Confidence            4588999999999999998875433

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.62  E-value=0.00048  Score=42.35  Aligned_cols=24  Identities=21%  Similarity=0.289  Sum_probs=20.0

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      ..-.|+|+|.+|+||||+++.+.+
T Consensus        12 k~~kI~lvG~~~vGKTsLl~~l~~   35 (186)
T d1f6ba_          12 KTGKLVFLGLDNAGKTTLLHMLKD   35 (186)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhC
Confidence            345688999999999999987654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=96.61  E-value=0.00098  Score=46.04  Aligned_cols=29  Identities=17%  Similarity=0.236  Sum_probs=24.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..-+|+|+|++|+||||++..++..+...
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~~~~~~   81 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGMLLIRE   81 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence            46779999999999999999998877543

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.60  E-value=0.00046  Score=45.19  Aligned_cols=23  Identities=26%  Similarity=0.342  Sum_probs=20.1

Q ss_pred             EEEEcCCCCchHHHHHHHHHHhh
Q psy7658          44 VVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.+.||+|+|||++++.++..+.
T Consensus        49 l~l~GppGtGKT~l~~~l~~~l~   71 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKRVS   71 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHHHH
Confidence            55679999999999999998874

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.59  E-value=0.0003  Score=45.47  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=23.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...|+|-|+.||||||+++.+...+.
T Consensus         2 ~k~I~ieG~dGsGKST~~~~L~~~l~   27 (241)
T d1p5zb_           2 IKKISIEGNIAAGKSTFVNILKQLCE   27 (241)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence            35799999999999999999988774

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.56  E-value=0.00066  Score=44.14  Aligned_cols=25  Identities=16%  Similarity=0.349  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...+++.||.|+|||++++.++..+
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~l   57 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLESI   57 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHhh
Confidence            3458899999999999999998875

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.00089  Score=43.38  Aligned_cols=27  Identities=22%  Similarity=0.341  Sum_probs=24.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+.|+|-|.-||||||+++.+...+..
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~l~~   28 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKTYPE   28 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence            468999999999999999999988753

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=96.54  E-value=0.0011  Score=43.23  Aligned_cols=57  Identities=21%  Similarity=0.293  Sum_probs=35.1

Q ss_pred             HHHhhcCCCCCCCCeeeeehhhhhhh-chh-cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          10 VKKYEGQILGTLSPHLFAIGSAAYSA-LAT-SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        10 ~~~y~~~~~~~~~phiy~~~~~~~~~-l~~-~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..+||.....++.=|- .+. +.+.. +.. .-...+++.||+|+|||++++.++..+...
T Consensus         3 ~~KyrP~~~~dlig~~-~~~-~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~   61 (239)
T d1njfa_           3 ARKWRPQTFADVVGQE-HVL-TALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE   61 (239)
T ss_dssp             HHHTCCSSGGGSCSCH-HHH-HHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCT
T ss_pred             hhhhCCCCHHHccChH-HHH-HHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCc
Confidence            4567766655554321 111 12222 221 225668899999999999999998887544

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.001  Score=42.24  Aligned_cols=21  Identities=29%  Similarity=0.287  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+|+|+.|+|||++++.+.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~   22 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLT   22 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            589999999999999998776

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.47  E-value=0.001  Score=41.01  Aligned_cols=20  Identities=30%  Similarity=0.338  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|.+|+|||++++.+.+
T Consensus         8 i~vvG~~~vGKTsLi~~l~~   27 (169)
T d3raba_           8 ILIIGNSSVGKTSFLFRYAD   27 (169)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999997765

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.47  E-value=0.00086  Score=41.70  Aligned_cols=23  Identities=22%  Similarity=0.310  Sum_probs=19.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      =.|+++|.+|+||||+++.+++.
T Consensus         9 ~kV~iiG~~~~GKSTLin~l~~~   31 (186)
T d1mkya2           9 IKVAIVGRPNVGKSTLFNAILNK   31 (186)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            35889999999999999988753

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=96.42  E-value=0.00075  Score=41.23  Aligned_cols=21  Identities=24%  Similarity=0.249  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+++|+.|+|||++++.+.+
T Consensus         4 ki~ivG~~~~GKTsLi~~l~~   24 (165)
T d1ksha_           4 RLLMLGLDNAGKTTILKKFNG   24 (165)
T ss_dssp             EEEEECSTTSSHHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHHHHcC
Confidence            478999999999999987654

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.42  E-value=0.00098  Score=42.68  Aligned_cols=25  Identities=16%  Similarity=0.271  Sum_probs=21.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      ...++++.|.|++|+|||+++..++
T Consensus        31 i~~G~~~li~G~pGsGKT~l~lq~~   55 (251)
T d1szpa2          31 VETGSITELFGEFRTGKSQLCHTLA   55 (251)
T ss_dssp             EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred             CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence            4579999999999999999876543

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=96.40  E-value=0.00095  Score=40.97  Aligned_cols=26  Identities=23%  Similarity=0.219  Sum_probs=21.1

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ...-.|+++|..|+||||+++.+.+.
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~   38 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMN   38 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcC
Confidence            34456899999999999999877653

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.38  E-value=0.0012  Score=40.33  Aligned_cols=20  Identities=20%  Similarity=0.389  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|.+|+|||++++.+..
T Consensus         5 v~liG~~~vGKSsLi~rl~~   24 (164)
T d1z2aa1           5 MVVVGNGAVGKSSMIQRYCK   24 (164)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987664

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=96.38  E-value=0.0023  Score=42.18  Aligned_cols=33  Identities=18%  Similarity=0.325  Sum_probs=26.1

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhhCC
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAVNK   70 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~g   70 (114)
                      ..+++.++|.|++|+|||+++..++..+....|
T Consensus        32 ~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g   64 (277)
T d1cr2a_          32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG   64 (277)
T ss_dssp             BCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSC
T ss_pred             CCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcc
Confidence            467999999999999999998877765544333

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=96.38  E-value=0.00093  Score=44.40  Aligned_cols=25  Identities=16%  Similarity=0.389  Sum_probs=21.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .-.|+|+|.+|+||||+++.+++.-
T Consensus        32 ~l~I~LvG~tg~GKSSliN~ilg~~   56 (257)
T d1h65a_          32 SLTILVMGKGGVGKSSTVNSIIGER   56 (257)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CcEEEEECCCCCcHHHHHHHHhCCC
Confidence            4568999999999999999998753

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.38  E-value=0.0027  Score=42.40  Aligned_cols=26  Identities=19%  Similarity=0.337  Sum_probs=22.2

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +..+++|.|..|.||||+++.+....
T Consensus        43 ~~~~v~I~GmgGiGKTtLA~~v~~~~   68 (277)
T d2a5yb3          43 DSFFLFLHGRAGSGKSVIASQALSKS   68 (277)
T ss_dssp             SSEEEEEECSTTSSHHHHHHHHHHHC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhh
Confidence            35688999999999999999887653

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.0012  Score=40.48  Aligned_cols=20  Identities=35%  Similarity=0.592  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|++|+|||++++.++.
T Consensus         6 i~viG~~~vGKTsli~~l~~   25 (166)
T d1ctqa_           6 LVVVGAGGVGKSALTIQLIQ   25 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999987765

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.37  E-value=0.0013  Score=40.68  Aligned_cols=20  Identities=25%  Similarity=0.381  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|.+|+|||++++.++.
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (173)
T d2a5ja1           6 YIIIGDTGVGKSCLLLQFTD   25 (173)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            77999999999999987664

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.36  E-value=0.0013  Score=42.47  Aligned_cols=27  Identities=26%  Similarity=0.353  Sum_probs=22.4

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ...++++.|.|++|+|||+++-.++-.
T Consensus        33 lp~G~~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          33 IETQAITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EESSEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999998755543

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.35  E-value=0.0014  Score=42.22  Aligned_cols=27  Identities=19%  Similarity=0.174  Sum_probs=23.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ...++++.|.|++|+|||+++..++..
T Consensus        34 ip~G~~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          34 IESMAITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             BCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred             CcCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            567999999999999999998776643

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.33  E-value=0.0013  Score=40.44  Aligned_cols=20  Identities=40%  Similarity=0.592  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|.+|+|||++++.+.+
T Consensus         5 i~~vG~~~vGKSsLi~~~~~   24 (175)
T d1ky3a_           5 VIILGDSGVGKTSLMHRYVN   24 (175)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHc
Confidence            78999999999999987664

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.33  E-value=0.0019  Score=44.41  Aligned_cols=28  Identities=29%  Similarity=0.311  Sum_probs=23.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ..-+|+|+|+.|+||||++..++..+..
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~~~~~   77 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGSLLTA   77 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHHHHhh
Confidence            3567999999999999999998887643

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.33  E-value=0.0016  Score=44.47  Aligned_cols=26  Identities=31%  Similarity=0.415  Sum_probs=22.9

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      -.+++++||+|+|||++++.++..+.
T Consensus        52 ~~~~lf~Gp~GvGKT~lak~la~~l~   77 (315)
T d1r6bx3          52 VGSFLFAGPTGVGKTEVTVQLSKALG   77 (315)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred             ceEEEEECCCcchhHHHHHHHHhhcc
Confidence            34788999999999999999999873

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0014  Score=40.39  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -++++|.+|+|||++++.++.
T Consensus         7 Ki~lvG~~~vGKTsLi~r~~~   27 (171)
T d2erya1           7 RLVVVGGGGVGKSALTIQFIQ   27 (171)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999987664

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=96.30  E-value=0.0015  Score=39.97  Aligned_cols=21  Identities=24%  Similarity=0.327  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+++|++|+|||++++.+..
T Consensus         4 ki~i~G~~~~GKTsLl~~l~~   24 (164)
T d1zd9a1           4 ELTLVGLQYSGKTTFVNVIAS   24 (164)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHc
Confidence            478999999999999987654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.30  E-value=0.0014  Score=40.06  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -++++|.+|+|||++++.++.
T Consensus         5 Ki~lvG~~~vGKTsLi~r~~~   25 (167)
T d1kaoa_           5 KVVVLGSGGVGKSALTVQFVT   25 (167)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987665

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.29  E-value=0.0014  Score=40.78  Aligned_cols=20  Identities=40%  Similarity=0.606  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      |+++|.+|+|||++++.+.+
T Consensus         5 v~vvG~~~vGKSSLi~~l~~   24 (184)
T d1vg8a_           5 VIILGDSGVGKTSLMNQYVN   24 (184)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.0015  Score=39.78  Aligned_cols=20  Identities=35%  Similarity=0.416  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      |+++|..|+|||++++.+..
T Consensus         3 v~vvG~~~vGKTsLi~r~~~   22 (164)
T d1yzqa1           3 LVFLGEQSVGKTSLITRFMY   22 (164)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997764

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.25  E-value=0.00096  Score=41.55  Aligned_cols=20  Identities=25%  Similarity=0.283  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      |+|+|++++||||+++.+.+
T Consensus         4 VaiiG~~nvGKSSLin~L~~   23 (185)
T d1lnza2           4 VGLVGFPSVGKSTLLSVVSS   23 (185)
T ss_dssp             EEEESSTTSSHHHHHHHSEE
T ss_pred             EEEECCCCCCHHHHHHHHhC
Confidence            78999999999999998754

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.25  E-value=0.0016  Score=44.95  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=20.6

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .+...+|+|++|+|||+++..|.-
T Consensus        24 ~~~l~~i~G~NGsGKS~ileAi~~   47 (427)
T d1w1wa_          24 ESNFTSIIGPNGSGKSNMMDAISF   47 (427)
T ss_dssp             TCSEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHH
Confidence            356889999999999999998853

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0014  Score=40.30  Aligned_cols=20  Identities=25%  Similarity=0.423  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      |+++|.+|+|||++++.++.
T Consensus         5 i~viG~~~vGKTsLi~r~~~   24 (171)
T d2erxa1           5 VAVFGAGGVGKSSLVLRFVK   24 (171)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999986654

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0016  Score=39.89  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -|+++|..|+|||++++.+..
T Consensus         6 Kv~liG~~~vGKTsLl~~~~~   26 (167)
T d1xtqa1           6 KIAILGYRSVGKSSLTIQFVE   26 (167)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            488999999999999987654

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.23  E-value=0.0016  Score=40.06  Aligned_cols=20  Identities=35%  Similarity=0.537  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|..|+|||++++.+..
T Consensus         8 i~lvG~~~vGKTsLi~~l~~   27 (171)
T d2ew1a1           8 IVLIGNAGVGKTCLVRRFTQ   27 (171)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=96.22  E-value=0.0016  Score=42.15  Aligned_cols=23  Identities=26%  Similarity=0.523  Sum_probs=19.9

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .+|+|+|..||||||.++.+...
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999988653

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.22  E-value=0.0017  Score=40.17  Aligned_cols=20  Identities=35%  Similarity=0.554  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|..|+|||++++.+.+
T Consensus         7 i~vvG~~~vGKTsLi~~~~~   26 (175)
T d2f9la1           7 VVLIGDSGVGKSNLLSRFTR   26 (175)
T ss_dssp             EEEESSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987665

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0017  Score=39.72  Aligned_cols=20  Identities=25%  Similarity=0.391  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++|+|.+|+|||++++.+++
T Consensus         7 ivlvG~~~vGKTsli~~~~~   26 (166)
T d1z0fa1           7 YIIIGDMGVGKSCLLHQFTE   26 (166)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.21  E-value=0.0016  Score=39.75  Aligned_cols=20  Identities=25%  Similarity=0.468  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|.+|+|||++++.++.
T Consensus         5 i~vvG~~~vGKTSli~~l~~   24 (166)
T d1g16a_           5 ILLIGDSGVGKSCLLVRFVE   24 (166)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987664

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.19  E-value=0.0018  Score=39.46  Aligned_cols=20  Identities=30%  Similarity=0.391  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|..|+|||++++.++.
T Consensus         5 v~liG~~~vGKTsLl~~~~~   24 (165)
T d1z06a1           5 IIVIGDSNVGKTCLTYRFCA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987664

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0018  Score=39.70  Aligned_cols=20  Identities=35%  Similarity=0.360  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|..|+|||++++.+..
T Consensus         6 ivlvG~~~vGKTsLi~r~~~   25 (167)
T d1z08a1           6 VVLLGEGCVGKTSLVLRYCE   25 (167)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987654

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.19  E-value=0.0025  Score=41.18  Aligned_cols=25  Identities=24%  Similarity=0.271  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+.|.|++|+|||.+++.+......
T Consensus        38 ~l~l~G~~G~GKTHLl~A~~~~~~~   62 (213)
T d1l8qa2          38 PIFIYGSVGTGKTHLLQAAGNEAKK   62 (213)
T ss_dssp             SEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHHHHHhcc
Confidence            3789999999999999999887654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=96.16  E-value=0.0018  Score=41.02  Aligned_cols=24  Identities=33%  Similarity=0.530  Sum_probs=20.0

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      -.+..++++|++|+||||++-.++
T Consensus        13 ~~g~gvli~G~sG~GKS~lal~l~   36 (177)
T d1knxa2          13 VFGVGVLLTGRSGIGKSECALDLI   36 (177)
T ss_dssp             ETTEEEEEEESSSSSHHHHHHHHH
T ss_pred             ECCEEEEEEcCCCCCHHHHHHHHH
Confidence            467889999999999999876544

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=96.16  E-value=0.00046  Score=42.59  Aligned_cols=24  Identities=21%  Similarity=0.325  Sum_probs=20.1

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-.|+|+|.+++||||+++.+.+.
T Consensus        16 ~~~I~lvG~~NvGKSSL~n~L~~~   39 (188)
T d1puia_          16 GIEVAFAGRSNAGKSSALNTLTNQ   39 (188)
T ss_dssp             SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC
Confidence            455999999999999999877553

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=96.14  E-value=0.0023  Score=40.44  Aligned_cols=24  Identities=33%  Similarity=0.432  Sum_probs=19.6

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      -.+.-++++|++|+||||++-.++
T Consensus        12 ~~g~gvl~~G~sG~GKStlal~l~   35 (176)
T d1kkma_          12 IYGLGVLITGDSGVGKSETALELV   35 (176)
T ss_dssp             ETTEEEEEECCTTSCHHHHHHHHH
T ss_pred             ECCEEEEEEeCCCCCHHHHHHHHH
Confidence            457889999999999999875444

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.13  E-value=0.0005  Score=41.75  Aligned_cols=22  Identities=23%  Similarity=0.323  Sum_probs=19.7

Q ss_pred             EEEEcCCCCchHHHHHHHHHHh
Q psy7658          44 VVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      |+++|.+++||||+++.+.+.-
T Consensus         3 I~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           3 MVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEECCHHHHTCHHHHHHHHHT
T ss_pred             EEEECCCCCCHHHHHHHHhCCC
Confidence            7899999999999999988753

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.13  E-value=0.002  Score=39.47  Aligned_cols=20  Identities=25%  Similarity=0.468  Sum_probs=17.8

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|..|+|||++++.+..
T Consensus         7 i~lvG~~~vGKTsli~rl~~   26 (167)
T d1z0ja1           7 VCLLGDTGVGKSSIMWRFVE   26 (167)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987664

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=96.11  E-value=0.00076  Score=41.90  Aligned_cols=21  Identities=19%  Similarity=0.241  Sum_probs=18.6

Q ss_pred             EEEEcCCCCchHHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~   64 (114)
                      |+|+|.+++||||+++.+.+.
T Consensus         4 VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           4 VGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             EEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEECCCCCCHHHHHHHHhCC
Confidence            789999999999999987653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0021  Score=39.45  Aligned_cols=20  Identities=30%  Similarity=0.446  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|..|+|||++++.+..
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (170)
T d1r2qa_           9 LVLLGESAVGKSSLVLRFVK   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987664

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.10  E-value=0.0021  Score=40.96  Aligned_cols=28  Identities=29%  Similarity=0.299  Sum_probs=23.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ...++++.|.|++|+|||+++..++-..
T Consensus        31 l~~G~l~~i~G~~G~GKT~~~l~~a~~~   58 (258)
T d2i1qa2          31 LESQSVTEFAGVFGSGKTQIMHQSCVNL   58 (258)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             ccCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence            4568999999999999999988776544

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.07  E-value=0.0022  Score=39.54  Aligned_cols=20  Identities=25%  Similarity=0.517  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      |+++|.+|+|||++++.+..
T Consensus         9 I~vvG~~~vGKSSli~~~~~   28 (174)
T d1wmsa_           9 VILLGDGGVGKSSLMNRYVT   28 (174)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            78999999999999987654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.05  E-value=0.0021  Score=40.42  Aligned_cols=20  Identities=25%  Similarity=0.346  Sum_probs=17.9

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++|+|+.|+|||++++.+..
T Consensus         9 ivvvG~~~vGKTsli~~l~~   28 (194)
T d2bcgy1           9 LLLIGNSGVGKSCLLLRFSD   28 (194)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHhh
Confidence            78999999999999987764

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0023  Score=39.31  Aligned_cols=21  Identities=24%  Similarity=0.381  Sum_probs=18.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -++++|.+|+|||++++.++.
T Consensus         4 Ki~lvG~~~vGKTsli~r~~~   24 (168)
T d2atva1           4 KLAIFGRAGVGKSALVVRFLT   24 (168)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999987664

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=96.05  E-value=0.0039  Score=40.08  Aligned_cols=29  Identities=17%  Similarity=0.328  Sum_probs=24.4

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...+.++.|.|++|+|||+++..++....
T Consensus        23 i~~gsl~li~G~pGsGKT~l~~qia~~~~   51 (242)
T d1tf7a2          23 FFKDSIILATGATGTGKTLLVSRFVENAC   51 (242)
T ss_dssp             EESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999987766644

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.0022  Score=39.61  Aligned_cols=21  Identities=29%  Similarity=0.333  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -++++|.+|+|||++++.+..
T Consensus         4 KivvvG~~~vGKTsLi~~~~~   24 (177)
T d1kmqa_           4 KLVIVGDGACGKTCLLIVNSK   24 (177)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987654

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0022  Score=39.58  Aligned_cols=21  Identities=33%  Similarity=0.498  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -|+++|..|+|||++++.++.
T Consensus         8 Kv~lvG~~~vGKTsLi~r~~~   28 (173)
T d2fn4a1           8 KLVVVGGGGVGKSALTIQFIQ   28 (173)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987654

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.03  E-value=0.0021  Score=39.94  Aligned_cols=20  Identities=30%  Similarity=0.381  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|..|+|||++++.+..
T Consensus         8 i~ivG~~~vGKTsLi~~l~~   27 (186)
T d2f7sa1           8 LLALGDSGVGKTTFLYRYTD   27 (186)
T ss_dssp             EEEESCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHhc
Confidence            78999999999999987653

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=96.03  E-value=0.0029  Score=44.13  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=25.0

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ....++++.||+|+|||++++.++.++.
T Consensus       152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~  179 (362)
T d1svma_         152 PKKRYWLFKGPIDSGKTTLAAALLELCG  179 (362)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred             CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence            3467999999999999999999999885

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.01  E-value=0.0024  Score=39.69  Aligned_cols=21  Identities=24%  Similarity=0.218  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -++++|.+|+|||++++.++.
T Consensus         7 KivviG~~~vGKTsli~~~~~   27 (183)
T d1mh1a_           7 KCVVVGDGAVGKTCLLISYTT   27 (183)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            388999999999999987664

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.01  E-value=0.0024  Score=39.26  Aligned_cols=21  Identities=33%  Similarity=0.539  Sum_probs=18.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|.+|+|||++++.++.
T Consensus         6 Ki~lvG~~~vGKTsll~~~~~   26 (169)
T d1x1ra1           6 KLVVVGDGGVGKSALTIQFFQ   26 (169)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            367899999999999987664

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=96.01  E-value=0.0028  Score=39.77  Aligned_cols=25  Identities=32%  Similarity=0.428  Sum_probs=20.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      .-.++-++++|++|+||||++-.++
T Consensus        12 ~~~g~gvli~G~sg~GKS~la~~l~   36 (169)
T d1ko7a2          12 DVYGVGVLITGDSGIGKSETALELI   36 (169)
T ss_dssp             EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred             EECCEEEEEEeCCCCCHHHHHHHHH
Confidence            4567889999999999999875443

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.00  E-value=0.0021  Score=39.46  Aligned_cols=20  Identities=25%  Similarity=0.501  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|.+|+|||++++.+.+
T Consensus         4 i~lvG~~~vGKTsLi~~~~~   23 (168)
T d2gjsa1           4 VLLLGAPGVGKSALARIFGG   23 (168)
T ss_dssp             EEEECCTTSSHHHHHHHHHT
T ss_pred             EEEECCCCcCHHHHHHHHhC
Confidence            78999999999999987654

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0026  Score=38.93  Aligned_cols=21  Identities=24%  Similarity=0.366  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -++++|..|+|||++++.+..
T Consensus         5 Ki~vvG~~~vGKTsLi~~~~~   25 (170)
T d1ek0a_           5 KLVLLGEAAVGKSSIVLRFVS   25 (170)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987654

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.96  E-value=0.003  Score=41.47  Aligned_cols=25  Identities=16%  Similarity=0.333  Sum_probs=20.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      ....++|+||+.+||||.+|.+.-.
T Consensus        40 ~~~~~iiTGpN~~GKSt~lk~i~l~   64 (234)
T d1wb9a2          40 QRRMLIITGPNMGGKSTYMRQTALI   64 (234)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEEeccCchhhHHHHHHHHHH
Confidence            3578999999999999999975443

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0026  Score=39.13  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      |+++|..|+|||++++.+..
T Consensus         8 I~lvG~~~vGKTsll~~~~~   27 (174)
T d2bmea1           8 FLVIGNAGTGKSCLLHQFIE   27 (174)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            88999999999999987654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=95.95  E-value=0.0022  Score=39.36  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=18.6

Q ss_pred             cEEEEEcCCCCchHHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -.|+++|+.|+|||++++.+.+
T Consensus        17 ~kI~vvG~~~vGKSsLi~~l~~   38 (176)
T d1fzqa_          17 VRILLLGLDNAGKTTLLKQLAS   38 (176)
T ss_dssp             EEEEEEESTTSSHHHHHHHHCC
T ss_pred             EEEEEECCCCCCHHHHHHHHhc
Confidence            4588999999999999987644

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.93  E-value=0.0028  Score=39.18  Aligned_cols=20  Identities=35%  Similarity=0.499  Sum_probs=18.0

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|..|+|||++++.+..
T Consensus        10 i~vvG~~~vGKTsli~~l~~   29 (177)
T d1x3sa1          10 ILIIGESGVGKSSLLLRFTD   29 (177)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999997664

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.92  E-value=0.0027  Score=39.51  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=17.5

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|.+|+|||++++.++.
T Consensus         5 ivliG~~~vGKTsli~r~~~   24 (179)
T d1m7ba_           5 IVVVGDSQCGKTALLHVFAK   24 (179)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999986655

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.0029  Score=38.75  Aligned_cols=20  Identities=35%  Similarity=0.436  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|..|+|||++++.++.
T Consensus         9 i~vvG~~~vGKTsli~~~~~   28 (170)
T d2g6ba1           9 VMLVGDSGVGKTCLLVRFKD   28 (170)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.89  E-value=0.003  Score=38.59  Aligned_cols=20  Identities=35%  Similarity=0.541  Sum_probs=17.6

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|.+|+|||++++.+..
T Consensus         6 ivvvG~~~vGKTsli~r~~~   25 (167)
T d1c1ya_           6 LVVLGSGGVGKSALTVQFVQ   25 (167)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHc
Confidence            78999999999999987654

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.88  E-value=0.0025  Score=41.34  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=19.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      +++|+|--||||||+++.++..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            6789999999999999988764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=95.84  E-value=0.0033  Score=38.61  Aligned_cols=21  Identities=33%  Similarity=0.483  Sum_probs=17.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -++++|..|+|||++++.+..
T Consensus         6 KivlvG~~~vGKTsli~~~~~   26 (168)
T d1u8za_           6 KVIMVGSGGVGKSALTLQFMY   26 (168)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHh
Confidence            378999999999999987654

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=95.83  E-value=0.0037  Score=40.83  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=19.6

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      +++++|+||+.+||||.+|.+.-
T Consensus        35 ~~~~iiTGpN~~GKSt~lk~i~l   57 (224)
T d1ewqa2          35 HELVLITGPNMAGKSTFLRQTAL   57 (224)
T ss_dssp             SCEEEEESCSSSSHHHHHHHHHH
T ss_pred             CcEEEEECCCccccchhhhhhHH
Confidence            46899999999999999996443

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.80  E-value=0.0057  Score=40.98  Aligned_cols=32  Identities=25%  Similarity=0.315  Sum_probs=25.9

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      |..+....++++||+|+|||++..-+++.+..
T Consensus        34 L~r~~k~n~lLVG~~GvGKTalv~~la~ri~~   65 (268)
T d1r6bx2          34 LCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQ   65 (268)
T ss_dssp             HTSSSSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred             HhcCccCCcEEECCCCCcHHHHHHHHHHHHHh
Confidence            33455678999999999999999988876654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.0029  Score=39.41  Aligned_cols=18  Identities=28%  Similarity=0.488  Sum_probs=16.8

Q ss_pred             EEEEcCCCCchHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLV   61 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i   61 (114)
                      ++++|.+|+|||++++.+
T Consensus         5 ivllG~~~vGKTsll~r~   22 (200)
T d1zcba2           5 ILLLGAGESGKSTFLKQM   22 (200)
T ss_dssp             EEEECSTTSSHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHH
Confidence            789999999999999877

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.78  E-value=0.0053  Score=38.83  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      ...+.++.|.|++|+|||+++..++
T Consensus        23 i~~G~~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          23 LPIGRSTLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EETTSEEEEEESTTSSHHHHHHHHH
T ss_pred             CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence            4579999999999999999986544

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0035  Score=39.09  Aligned_cols=20  Identities=25%  Similarity=0.278  Sum_probs=17.4

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|.+|+|||++++.++.
T Consensus        12 i~lvG~~~vGKTsLi~r~~~   31 (185)
T d2atxa1          12 CVVVGDGAVGKTCLLMSYAN   31 (185)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHhh
Confidence            78999999999999886553

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.74  E-value=0.0048  Score=39.45  Aligned_cols=27  Identities=19%  Similarity=0.351  Sum_probs=23.7

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      ...+++.||.|+|||++++.++..+..
T Consensus        24 ~h~lLl~Gp~G~GKtt~a~~~a~~l~~   50 (207)
T d1a5ta2          24 HHALLIQALPGMGDDALIYALSRYLLC   50 (207)
T ss_dssp             CSEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHhccc
Confidence            567899999999999999999988753

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=95.72  E-value=0.0031  Score=39.20  Aligned_cols=21  Identities=29%  Similarity=0.362  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+|+|..++||||+++.+.+
T Consensus         7 nIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           7 NLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEEeCCCCcHHHHHHHHHH
Confidence            489999999999999998875

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.68  E-value=0.0031  Score=38.85  Aligned_cols=20  Identities=35%  Similarity=0.602  Sum_probs=17.7

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|..|+|||++++.+.+
T Consensus         6 v~lvG~~~vGKTsLi~~~~~   25 (172)
T d2g3ya1           6 VVLIGEQGVGKSTLANIFAG   25 (172)
T ss_dssp             EEEECCTTSSHHHHHHHHHC
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999987764

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.61  E-value=0.0042  Score=38.84  Aligned_cols=20  Identities=25%  Similarity=0.257  Sum_probs=17.3

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      ++++|..|+|||++++.+..
T Consensus         6 vvllG~~~vGKTSli~r~~~   25 (191)
T d2ngra_           6 CVVVGDGAVGKTCLLISYTT   25 (191)
T ss_dssp             EEEEESTTSSHHHHHHHHHH
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999876554

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=95.58  E-value=0.0086  Score=38.31  Aligned_cols=30  Identities=27%  Similarity=0.316  Sum_probs=25.2

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+....++++|++|.|||++..-+++.+..
T Consensus        40 r~~k~n~lLvG~pGVGKTalv~~LA~ri~~   69 (195)
T d1jbka_          40 RRTKNNPVLIGEPGVGKTAIVEGLAQRIIN   69 (195)
T ss_dssp             SSSSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred             ccCCCCeEEEecCCcccHHHHHHHHHHHHh
Confidence            455678999999999999999988887754

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=95.58  E-value=0.0025  Score=39.51  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=19.4

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      ...--++++|.+|+||||+++.+.
T Consensus        15 ~k~~KI~lvG~~~vGKTsLi~~l~   38 (182)
T d1moza_          15 NKELRILILGLDGAGKTTILYRLQ   38 (182)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred             CceEEEEEECCCCCCHHHHHHHHh
Confidence            344568899999999999998654

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.57  E-value=0.0023  Score=43.67  Aligned_cols=26  Identities=23%  Similarity=0.437  Sum_probs=22.8

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +.-+++.|+.|+|||++++.+...+.
T Consensus        28 ~h~vLl~G~pG~GKT~lar~~~~iLp   53 (333)
T d1g8pa_          28 IGGVLVFGDRGTGKSTAVRALAALLP   53 (333)
T ss_dssp             GCCEEEECCGGGCTTHHHHHHHHHSC
T ss_pred             CCeEEEECCCCccHHHHHHHHHHhCC
Confidence            34689999999999999999998873

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.56  E-value=0.0034  Score=44.24  Aligned_cols=24  Identities=29%  Similarity=0.426  Sum_probs=21.0

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-.|+|+|.+|+||||+++.+.+.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G~   79 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRGI   79 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCC
Confidence            345999999999999999999874

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.54  E-value=0.0022  Score=39.53  Aligned_cols=20  Identities=30%  Similarity=0.411  Sum_probs=8.4

Q ss_pred             EEEEcCCCCchHHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~   63 (114)
                      |+++|..|+|||++++.+++
T Consensus         9 i~vvG~~~vGKTsLi~~l~~   28 (173)
T d2fu5c1           9 LLLIGDSGVGKTCVLFRFSE   28 (173)
T ss_dssp             EEEECCCCC-----------
T ss_pred             EEEECCCCcCHHHHHHHHHh
Confidence            78999999999999986654

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.50  E-value=0.0047  Score=42.20  Aligned_cols=23  Identities=35%  Similarity=0.478  Sum_probs=21.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ++.++||+|+|||.+++.+...+
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~l   77 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAATL   77 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHHh
Confidence            67899999999999999999886

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=95.45  E-value=0.0029  Score=38.89  Aligned_cols=21  Identities=19%  Similarity=0.227  Sum_probs=18.1

Q ss_pred             cEEEEEcCCCCchHHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~   62 (114)
                      -.++++|.+|+|||++++.+.
T Consensus        13 ~kIvlvG~~~vGKTSli~rl~   33 (173)
T d1e0sa_          13 MRILMLGLDAAGKTTILYKLK   33 (173)
T ss_dssp             EEEEEEEETTSSHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHh
Confidence            458899999999999998764

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.43  E-value=0.0074  Score=38.97  Aligned_cols=26  Identities=19%  Similarity=0.239  Sum_probs=22.2

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      +-+|+|+|..++||||+++.+++...
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~~   30 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSAV   30 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhcc
Confidence            45699999999999999999887643

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.43  E-value=0.0055  Score=38.03  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .++++|..|+|||++++.++.
T Consensus         7 ki~vlG~~~vGKTsLi~~~~~   27 (175)
T d2bmja1           7 RLGVLGDARSGKSSLIHRFLT   27 (175)
T ss_dssp             EEEEECCTTTTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            488999999999999986655

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.31  E-value=0.0024  Score=39.31  Aligned_cols=19  Identities=37%  Similarity=0.667  Sum_probs=16.4

Q ss_pred             EEEEcCCCCchHHHHHHHH
Q psy7658          44 VVISGESGSGKTECTKLVM   62 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~   62 (114)
                      ++++|.+|+|||++++.++
T Consensus         6 i~vvG~~~vGKTsli~~~~   24 (170)
T d1i2ma_           6 LVLVGDGGTGKTTFVKRHL   24 (170)
T ss_dssp             EEEEECTTSSHHHHHHTTC
T ss_pred             EEEECCCCcCHHHHHHHHH
Confidence            7899999999999987543

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.29  E-value=0.0063  Score=37.62  Aligned_cols=22  Identities=23%  Similarity=0.299  Sum_probs=18.2

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      -++++|..|+|||++++.+..-
T Consensus         4 Kiv~lG~~~vGKTsll~r~~~~   25 (200)
T d2bcjq2           4 KLLLLGTGESGKSTFIKQMRII   25 (200)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            3789999999999999876443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=95.28  E-value=0.006  Score=39.23  Aligned_cols=20  Identities=25%  Similarity=0.421  Sum_probs=17.3

Q ss_pred             cEEEEEcCCCCchHHHHHHH
Q psy7658          42 QVVVISGESGSGKTECTKLV   61 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i   61 (114)
                      --++++|.+|+|||++++.+
T Consensus         7 ~KilllG~~~vGKTsll~~~   26 (221)
T d1azta2           7 HRLLLLGAGESGKSTIVKQM   26 (221)
T ss_dssp             EEEEEECSTTSSHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHH
Confidence            35789999999999998865

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=95.12  E-value=0.011  Score=38.69  Aligned_cols=27  Identities=19%  Similarity=0.249  Sum_probs=22.4

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ++++.+|.|++|+|||+++-.++-.+.
T Consensus        28 pg~~~~i~G~~G~GKS~l~l~la~~ia   54 (274)
T d1nlfa_          28 AGTVGALVSPGGAGKSMLALQLAAQIA   54 (274)
T ss_dssp             TTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred             CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence            478999999999999999877665543

>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: YFV helicase domain
species: Yellow fever virus [TaxId: 11089]

Probab=95.03  E-value=0.007  Score=35.14  Aligned_cols=27  Identities=19%  Similarity=0.199  Sum_probs=19.9

Q ss_pred             cCCcEEEEEcCCCCchHHHH-HHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECT-KLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~-~~i~~~~   65 (114)
                      +.++.++|..++|+|||..+ ..++...
T Consensus         5 ~~~~~~il~~~tGsGKT~~~~~~~~~~~   32 (140)
T d1yksa1           5 KKGMTTVLDFHPGAGKTRRFLPQILAEC   32 (140)
T ss_dssp             STTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred             HcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence            45789999999999999655 3334443

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=94.97  E-value=0.0074  Score=35.56  Aligned_cols=20  Identities=30%  Similarity=0.371  Sum_probs=16.9

Q ss_pred             CCcEEEEEcCCCCchHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTK   59 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~   59 (114)
                      +.|..+|.+|+|+|||+.+-
T Consensus         7 ~~~~~ll~apTGsGKT~~~~   26 (136)
T d1a1va1           7 SFQVAHLHAPTGSGKSTKVP   26 (136)
T ss_dssp             SCEEEEEECCTTSCTTTHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHH
Confidence            45888999999999998763

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.93  E-value=0.0098  Score=36.54  Aligned_cols=21  Identities=24%  Similarity=0.335  Sum_probs=17.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      -++++|..|+|||++++.+..
T Consensus         4 KivllG~~~vGKTsl~~r~~~   24 (195)
T d1svsa1           4 KLLLLGAGESGKSTIVKQMKI   24 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhh
Confidence            378999999999999986544

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=94.70  E-value=0.013  Score=40.85  Aligned_cols=27  Identities=15%  Similarity=0.249  Sum_probs=21.4

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+.++|+|.+|+|||++++.++..+.
T Consensus        49 ~~~H~~I~G~tGsGKT~~l~~li~~~~   75 (433)
T d1e9ra_          49 EPRHLLVNGATGTGKSVLLRELAYTGL   75 (433)
T ss_dssp             GGGCEEEEECTTSSHHHHHHHHHHHHH
T ss_pred             ccceEEEEeCCCCcHHHHHHHHHHHHH
Confidence            456689999999999999876655443

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.017  Score=39.04  Aligned_cols=31  Identities=23%  Similarity=0.129  Sum_probs=27.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +-.||.++|.|++|+|||+++..++......
T Consensus        40 igrGQr~~I~g~~g~GKT~l~~~i~~~~~~~   70 (289)
T d1xpua3          40 IGRGQRGLIVAPPKAGKTMLLQNIAQSIAYN   70 (289)
T ss_dssp             CBTTCEEEEEECSSSSHHHHHHHHHHHHHHH
T ss_pred             ccCCCeeeEeCCCCCCHHHHHHHHHHHHhhc
Confidence            5789999999999999999999888866544

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=94.55  E-value=0.024  Score=37.61  Aligned_cols=30  Identities=30%  Similarity=0.263  Sum_probs=24.3

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ..++++.+.||+|+|||+++-.++......
T Consensus        52 ~~g~itei~G~~gsGKTtl~l~~~~~~q~~   81 (263)
T d1u94a1          52 PMGRIVEIYGPESSGKTTLTLQVIAAAQRE   81 (263)
T ss_dssp             ETTSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             cCceEEEEecCCCcHHHHHHHHHHHHHHcC
Confidence            468999999999999999987666655443

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=94.47  E-value=0.023  Score=36.13  Aligned_cols=26  Identities=31%  Similarity=0.170  Sum_probs=21.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .|+++|..++||||++..++......
T Consensus         5 ni~iiGhvd~GKSTL~~~Ll~~~g~~   30 (204)
T d2c78a3           5 NVGTIGHVDHGKTTLTAALTYVAAAE   30 (204)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHHHHHS
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHhhhc
Confidence            38899999999999999988765543

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.47  E-value=0.011  Score=39.39  Aligned_cols=22  Identities=14%  Similarity=0.246  Sum_probs=20.2

Q ss_pred             EEEEcCCCCchHHHHHHHHHHh
Q psy7658          44 VVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      ++++|+..+||||+++.+++.-
T Consensus        29 ivvvG~~SsGKSsliNaLlg~~   50 (299)
T d2akab1          29 IAVVGGQSAGKSSVLENFVGRD   50 (299)
T ss_dssp             EEEEEBTTSCHHHHHHHHHTSC
T ss_pred             EEEEcCCCCCHHHHHHHHhCCC
Confidence            7899999999999999999855

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.40  E-value=0.017  Score=39.62  Aligned_cols=25  Identities=28%  Similarity=0.461  Sum_probs=20.8

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      -++++.||+|+|||.+++.+.+.+.
T Consensus       124 g~~l~~G~pG~GKT~la~ala~~~~  148 (321)
T d1w44a_         124 GMVIVTGKGNSGKTPLVHALGEALG  148 (321)
T ss_dssp             EEEEEECSSSSCHHHHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHHHhc
Confidence            3455689999999999999998764

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=94.35  E-value=0.018  Score=37.01  Aligned_cols=28  Identities=14%  Similarity=0.369  Sum_probs=25.0

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ....++++.||.++|||.++..++.++.
T Consensus        51 PKkn~i~~~GP~~TGKS~f~~sl~~~l~   78 (205)
T d1tuea_          51 PKKNCLVFCGPANTGKSYFGMSFIHFIQ   78 (205)
T ss_dssp             TTCSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred             CCceEEEEECCCCccHHHHHHHHHHHhC
Confidence            4568999999999999999999999874

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=94.20  E-value=0.016  Score=39.91  Aligned_cols=25  Identities=16%  Similarity=0.325  Sum_probs=21.9

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .|.|-|.-|+||||+++.+...+..
T Consensus         8 rI~iEG~iGsGKSTl~~~L~~~l~~   32 (333)
T d1p6xa_           8 RIYLDGVYGIGKSTTGRVMASAASG   32 (333)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred             EEEEECCccCCHHHHHHHHHHHhcc
Confidence            4789999999999999999887653

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=94.13  E-value=0.022  Score=39.47  Aligned_cols=27  Identities=33%  Similarity=0.511  Sum_probs=21.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .+.+.+|.|+.|+|||+++..++..+.
T Consensus       162 ~~~~~vI~G~pGTGKTt~i~~~l~~l~  188 (359)
T d1w36d1         162 TRRISVISGGPGTGKTTTVAKLLAALI  188 (359)
T ss_dssp             TBSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCceehHHHHHHHHH
Confidence            467899999999999999876655543

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=94.04  E-value=0.015  Score=39.95  Aligned_cols=25  Identities=24%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .|+|-|.-|+||||+++.+...+..
T Consensus         7 rI~IEG~iGsGKSTl~~~L~~~l~~   31 (331)
T d1osna_           7 RIYLDGAYGIGKTTAAEEFLHHFAI   31 (331)
T ss_dssp             EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHhh
Confidence            4889999999999999999887653

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=93.95  E-value=0.016  Score=38.72  Aligned_cols=23  Identities=22%  Similarity=0.335  Sum_probs=20.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++++|...+||||+++.+++.-
T Consensus        26 ~ivVvG~~ssGKSSliNaLlG~~   48 (306)
T d1jwyb_          26 QIVVVGSQSSGKSSVLENIVGRD   48 (306)
T ss_dssp             EEEEEECSSSSHHHHHHHHHTSC
T ss_pred             eEEEEeCCCCCHHHHHHHHhCCC
Confidence            47899999999999999999854

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=93.73  E-value=0.045  Score=35.65  Aligned_cols=33  Identities=24%  Similarity=0.447  Sum_probs=27.1

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      |......+++++|.-|+||||+.-.+...+...
T Consensus        15 ~~~~~~~iii~sGKGGVGKTT~a~nLA~~lA~~   47 (279)
T d1ihua2          15 IARNEHGLIMLMGKGGVGKTTMAAAIAVRLADM   47 (279)
T ss_dssp             HHTTSCEEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             hhcCCCEEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            445668899999999999999988887777654

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=93.58  E-value=0.032  Score=36.53  Aligned_cols=28  Identities=32%  Similarity=0.501  Sum_probs=22.9

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..+.-+.|.||.|+||+.+++.+.....
T Consensus        21 ~~~~pvlI~Ge~GtGK~~~A~~ih~~s~   48 (247)
T d1ny5a2          21 CAECPVLITGESGVGKEVVARLIHKLSD   48 (247)
T ss_dssp             TCCSCEEEECSTTSSHHHHHHHHHHHST
T ss_pred             CCCCCEEEECCCCcCHHHHHHHHHHhcC
Confidence            3466789999999999999998876543

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=93.48  E-value=0.03  Score=37.26  Aligned_cols=23  Identities=35%  Similarity=0.507  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++|+|..|+||||++..++...
T Consensus         4 Nv~iiGh~~~GKTtL~e~ll~~~   26 (267)
T d2dy1a2           4 TVALVGHAGSGKTTLTEALLYKT   26 (267)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcHHHHHHHHHHHc
Confidence            48899999999999999886543

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=93.48  E-value=0.033  Score=37.21  Aligned_cols=25  Identities=20%  Similarity=0.226  Sum_probs=21.9

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .+--++|+|.+.+||||+++.+.+.
T Consensus         9 ~~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1           9 NNLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHCC
Confidence            4556999999999999999999865

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=93.46  E-value=0.015  Score=39.93  Aligned_cols=24  Identities=38%  Similarity=0.494  Sum_probs=19.0

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      .|.|-|.-|+||||+++.+...+.
T Consensus         6 rI~IEG~iGsGKTTl~~~La~~l~   29 (329)
T d1e2ka_           6 RVYIDGPHGMGKTTTTQLLVALGS   29 (329)
T ss_dssp             EEEECSCTTSSHHHHHHHHTC---
T ss_pred             EEEEECCcCCCHHHHHHHHHHHhC
Confidence            378999999999999998876653

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.45  E-value=0.019  Score=38.39  Aligned_cols=40  Identities=20%  Similarity=0.131  Sum_probs=28.2

Q ss_pred             eeehhhhhhhchhcC--CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          26 FAIGSAAYSALATSG--NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        26 y~~~~~~~~~l~~~~--~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      +.+..++...+..-.  =-+|.|+|+.++|||++++.+.+..
T Consensus        15 l~~~~e~l~~l~~~~~~v~vvsi~G~~~sGKS~llN~l~~~~   56 (277)
T d1f5na2          15 LMANPEALKILSAITQPMVVVAIVGLYRTGKSYLMNKLAGKK   56 (277)
T ss_dssp             EEECHHHHHHHHTCCSBEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             EEECHHHHHHHHcCCCCEEEEEEECCCCCCHHHHHHHHcCCC
Confidence            455566655554322  2367799999999999999887654

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.28  E-value=0.023  Score=38.21  Aligned_cols=22  Identities=14%  Similarity=0.145  Sum_probs=18.7

Q ss_pred             EEEEcCCCCchHHHHHHHHHHh
Q psy7658          44 VVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      |+|+|.+.+||||+++.+.+.-
T Consensus         3 v~lvG~pn~GKStlfn~lt~~~   24 (319)
T d1wxqa1           3 IGVVGKPNVGKSTFFSAATLVD   24 (319)
T ss_dssp             EEEEECTTSSHHHHHHHHHC--
T ss_pred             EeEECCCCCCHHHHHHHHHCCC
Confidence            7899999999999999987653

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=93.25  E-value=0.033  Score=38.99  Aligned_cols=30  Identities=27%  Similarity=0.325  Sum_probs=23.1

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .+....++|+|++|+|||.++.-+++.+..
T Consensus        40 r~~k~n~llvG~~GvGKtaiv~~la~~i~~   69 (387)
T d1qvra2          40 RRTKNNPVLIGEPGVGKTAIVEGLAQRIVK   69 (387)
T ss_dssp             CSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             cCCCCCCeEECCCCCCHHHHHHHHHHHHHh
Confidence            444555789999999999999877766543

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=93.24  E-value=0.025  Score=36.28  Aligned_cols=27  Identities=19%  Similarity=0.266  Sum_probs=20.4

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      -.++.+++++|+|+|||+..-..+-+.
T Consensus        56 l~g~~~~i~apTGsGKT~~~~~~~~~~   82 (237)
T d1gkub1          56 LRKESFAATAPTGVGKTSFGLAMSLFL   82 (237)
T ss_dssp             HTTCCEECCCCBTSCSHHHHHHHHHHH
T ss_pred             HCCCCEEEEecCCChHHHHHHHHHHHH
Confidence            357789999999999998765544433

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=93.13  E-value=0.031  Score=34.87  Aligned_cols=22  Identities=27%  Similarity=0.294  Sum_probs=19.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .|+++|...+||||++..+++.
T Consensus         7 nIaiiGhvd~GKSTL~~~L~g~   28 (195)
T d1kk1a3           7 NIGMVGHVDHGKTTLTKALTGV   28 (195)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEEeccCCcHHHHHHHHHhh
Confidence            3789999999999999988753

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.13  E-value=0.063  Score=31.62  Aligned_cols=30  Identities=3%  Similarity=0.080  Sum_probs=24.4

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +.+=.|.+.|.+|+||+++++.+...+...
T Consensus         4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~   33 (122)
T d1g8fa3           4 KQGFSIVLGNSLTVSREQLSIALLSTFLQF   33 (122)
T ss_dssp             GCCEEEEECTTCCSCHHHHHHHHHHHHTTS
T ss_pred             ccceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            346678999999999999999887666553

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=93.07  E-value=0.034  Score=36.78  Aligned_cols=25  Identities=16%  Similarity=0.021  Sum_probs=20.7

Q ss_pred             cEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          42 QVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        42 ~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      -.++|+|.+.+||||+++.+...-.
T Consensus         3 ~~~GivG~Pn~GKSTlf~~lt~~~~   27 (278)
T d1jala1           3 FKCGIVGLPNVGKSTLFNALTKAGI   27 (278)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred             ceEEEECCCCCCHHHHHHHHHCCCC
Confidence            3589999999999999998886543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=93.03  E-value=0.061  Score=35.70  Aligned_cols=31  Identities=16%  Similarity=0.230  Sum_probs=25.1

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhhC
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~~   69 (114)
                      ..+.++.+.|++|+|||+++-.++.......
T Consensus        55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g   85 (268)
T d1xp8a1          55 PRGRITEIYGPESGGKTTLALAIVAQAQKAG   85 (268)
T ss_dssp             ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred             cCceEEEEecCCccchHHHHHHHHHHHHhCC
Confidence            5689999999999999999977776655433

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.96  E-value=0.085  Score=34.36  Aligned_cols=30  Identities=23%  Similarity=0.244  Sum_probs=24.8

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ....++.++|.-|.||||+.-.++..+...
T Consensus         6 ~~p~~i~~sGKGGVGKTTvaa~lA~~lA~~   35 (296)
T d1ihua1           6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQ   35 (296)
T ss_dssp             SCCSEEEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred             CCCeEEEEECCCcChHHHHHHHHHHHHHHC
Confidence            345788899999999999998888877654

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=92.96  E-value=0.033  Score=37.30  Aligned_cols=23  Identities=26%  Similarity=0.391  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|+|..|+||||++..++...
T Consensus         8 ni~i~gh~~~GKTtL~e~ll~~~   30 (276)
T d2bv3a2           8 NIGIAAHIDAGKTTTTERILYYT   30 (276)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHhc
Confidence            58999999999999998876543

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.82  E-value=0.082  Score=35.33  Aligned_cols=28  Identities=18%  Similarity=0.211  Sum_probs=24.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .-+||.++|.|.+|+|||+++..++...
T Consensus        65 igkGQr~~If~~~g~GKt~l~~~i~~~~   92 (276)
T d2jdid3          65 YAKGGKIGLFGGAGVGKTVLIMELINNV   92 (276)
T ss_dssp             EETTCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCCCCHHHHHHHHHHHH
Confidence            4679999999999999999988776553

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.78  E-value=0.075  Score=35.33  Aligned_cols=29  Identities=24%  Similarity=0.267  Sum_probs=23.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ...+.++.+.|++|+|||+++-.++....
T Consensus        57 ~~~g~i~e~~G~~~~GKT~l~l~~~~~~q   85 (269)
T d1mo6a1          57 LPRGRVIEIYGPESSGKTTVALHAVANAQ   85 (269)
T ss_dssp             BCSSSEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred             cccceeEEEecCCCcHHHHHHHHHHHHHh
Confidence            35699999999999999999866555443

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.75  E-value=0.021  Score=35.80  Aligned_cols=20  Identities=15%  Similarity=0.277  Sum_probs=16.7

Q ss_pred             CCcEEEEEcCCCCchHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTK   59 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~   59 (114)
                      .++.+++++|+|+|||+..-
T Consensus        39 ~~~~~il~apTGsGKT~~a~   58 (202)
T d2p6ra3          39 SGKNLLLAMPTAAGKTLLAE   58 (202)
T ss_dssp             TCSCEEEECSSHHHHHHHHH
T ss_pred             cCCCEEEEcCCCCchhHHHH
Confidence            45678899999999998754

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=92.74  E-value=0.057  Score=35.80  Aligned_cols=28  Identities=14%  Similarity=0.298  Sum_probs=24.5

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ....++.+.|+.++|||+++..+..++.
T Consensus       102 ~k~n~~~l~G~~~tGKS~f~~~i~~~lg  129 (267)
T d1u0ja_         102 GKRNTIWLFGPATTGKTNIAEAIAHTVP  129 (267)
T ss_dssp             TTCCEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred             CccEEEEEEcCCCCCHHHHHHHHHHHhc
Confidence            4477889999999999999999998873

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=92.68  E-value=0.062  Score=33.89  Aligned_cols=25  Identities=32%  Similarity=0.304  Sum_probs=21.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAA   67 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~   67 (114)
                      .|+++|.-++||||++..+++.+..
T Consensus         5 ni~iiGHvd~GKSTL~~~l~~~~~~   29 (196)
T d1d2ea3           5 NVGTIGHVDHGKTTLTAAITKILAE   29 (196)
T ss_dssp             EEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHHHH
Confidence            3889999999999999998876544

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=92.36  E-value=0.079  Score=32.77  Aligned_cols=28  Identities=21%  Similarity=0.277  Sum_probs=23.6

Q ss_pred             cEEEEEcCC-CCchHHHHHHHHHHhhhhC
Q psy7658          42 QVVVISGES-GSGKTECTKLVMQYLAAVN   69 (114)
Q Consensus        42 ~~i~l~G~s-GsGKst~~~~i~~~~~~~~   69 (114)
                      ..+.|+|.. |+||||..-.++..+...+
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~aLa~~G   30 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQAAKAAG   30 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHHHHHHTT
T ss_pred             ceEEEEECCCCccHHHHHHHHHHHHHHCC
Confidence            468899995 9999999998888887654

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=92.34  E-value=0.066  Score=33.77  Aligned_cols=31  Identities=23%  Similarity=0.250  Sum_probs=26.0

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      ......+++.|++|+||++++..+...+...
T Consensus        12 ~~~~~~~l~~G~~g~gk~~~a~~l~~~i~~~   42 (198)
T d2gnoa2          12 KSEGISILINGEDLSYPREVSLELPEYVEKF   42 (198)
T ss_dssp             TCSSEEEEEECSSSSHHHHHHHHHHHHHHTS
T ss_pred             cCCCceEEEECCCCCCHHHHHHHHHHHHhcc
Confidence            4557889999999999999999988877543

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.29  E-value=0.033  Score=36.95  Aligned_cols=26  Identities=27%  Similarity=0.374  Sum_probs=17.8

Q ss_pred             CcEEEEEcCCCCchHHHHH-HHHHHhh
Q psy7658          41 NQVVVISGESGSGKTECTK-LVMQYLA   66 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~-~i~~~~~   66 (114)
                      +..+.|.|..|+||||.+- .+..++.
T Consensus        24 ~g~~lV~g~aGSGKTt~l~~ri~~ll~   50 (318)
T d1pjra1          24 EGPLLIMAGAGSGKTRVLTHRIAYLMA   50 (318)
T ss_dssp             SSCEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred             CCCEEEEecCCccHHHHHHHHHHHHHH
Confidence            3457788999999998663 3444443

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=92.27  E-value=0.076  Score=32.72  Aligned_cols=24  Identities=25%  Similarity=0.315  Sum_probs=17.1

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLA   66 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~   66 (114)
                      ..++++|+|+|||..+-.++....
T Consensus        25 n~lv~~pTGsGKT~i~~~~~~~~~   48 (200)
T d1wp9a1          25 NCLIVLPTGLGKTLIAMMIAEYRL   48 (200)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHHHH
T ss_pred             CeEEEeCCCCcHHHHHHHHHHHHH
Confidence            366889999999986655554433

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=91.67  E-value=0.077  Score=34.62  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=17.6

Q ss_pred             CcEEEEEcCCCCchHHHH-HHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECT-KLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~-~~i~~~~   65 (114)
                      +..++|.|+.|+|||+.+ ..+..++
T Consensus        14 ~~~~lI~g~aGTGKTt~l~~rv~~ll   39 (306)
T d1uaaa1          14 TGPCLVLAGAGSGKTRVITNKIAHLI   39 (306)
T ss_dssp             SSEEEECCCTTSCHHHHHHHHHHHHH
T ss_pred             CCCEEEEeeCCccHHHHHHHHHHHHH
Confidence            345778899999999865 3444444

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=91.63  E-value=0.064  Score=33.67  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++++|.-.+||||++..+++..
T Consensus        10 ni~iiGhVd~GKSTL~~~L~~~~   32 (205)
T d2qn6a3          10 NIGVVGHVDHGKTTLVQAITGIW   32 (205)
T ss_dssp             EEEEECSTTSSHHHHHHHHHSCC
T ss_pred             EEEEEEccCCcHHHHHHHHHhhh
Confidence            48899999999999999887643

>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: Dengue virus helicase
species: Dengue virus type 2 [TaxId: 11060]

Probab=91.52  E-value=0.073  Score=34.79  Aligned_cols=19  Identities=21%  Similarity=0.427  Sum_probs=16.4

Q ss_pred             cCCcEEEEEcCCCCchHHH
Q psy7658          39 SGNQVVVISGESGSGKTEC   57 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~   57 (114)
                      .+++.+++.+++|+|||+.
T Consensus         7 ~~~~~~lv~~~TGsGKT~~   25 (305)
T d2bmfa2           7 RKKRLTIMDLHPGAGKTKR   25 (305)
T ss_dssp             STTCEEEECCCTTSSTTTT
T ss_pred             hcCCcEEEEECCCCCHHHH
Confidence            4678899999999999963

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=90.91  E-value=0.11  Score=33.59  Aligned_cols=26  Identities=35%  Similarity=0.429  Sum_probs=22.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .|+|+|.-|+||||++-.+...+...
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA~~LA~~   28 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLTSGLHAM   28 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHTT
T ss_pred             EEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            57889999999999998888887654

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=90.65  E-value=0.089  Score=33.58  Aligned_cols=21  Identities=14%  Similarity=0.317  Sum_probs=18.3

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+++|..++||||++..++.
T Consensus         5 Ni~viGHVd~GKTTL~~~Ll~   25 (224)
T d1jnya3           5 NLIVIGHVDHGKSTLVGRLLM   25 (224)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEecCCCCHHHHHHHHHH
Confidence            488999999999999987764

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=90.47  E-value=0.11  Score=33.25  Aligned_cols=23  Identities=13%  Similarity=0.193  Sum_probs=19.5

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .++++|...+||||++..++...
T Consensus        11 ~i~viGHVd~GKSTL~~~Ll~~~   33 (222)
T d1zunb3          11 RFLTCGNVDDGKSTLIGRLLHDS   33 (222)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHHT
T ss_pred             eEEEEcCCCCCHHHHHHHHHHHc
Confidence            37899999999999999886544

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.31  E-value=0.12  Score=33.61  Aligned_cols=23  Identities=30%  Similarity=0.341  Sum_probs=19.7

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+++|..++||||++..++...
T Consensus         8 Ni~iiGHvD~GKsTl~~~ll~~~   30 (239)
T d1f60a3           8 NVVVIGHVDSGKSTTTGHLIYKC   30 (239)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHc
Confidence            58899999999999998877543

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=90.27  E-value=0.099  Score=34.38  Aligned_cols=25  Identities=16%  Similarity=0.120  Sum_probs=21.4

Q ss_pred             CcEEEEEcCCCCchHHHHHHHHHHh
Q psy7658          41 NQVVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        41 ~~~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .-.++++|.+++||||+++.+.+.-
T Consensus       112 ~~~v~vvG~PNvGKSsliN~L~~~~  136 (273)
T d1puja_         112 AIRALIIGIPNVGKSTLINRLAKKN  136 (273)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             ceEEEEEecCccchhhhhhhhhccc
Confidence            4458999999999999999988754

>d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Escherichia coli [TaxId: 562]

Probab=89.88  E-value=0.11  Score=35.31  Aligned_cols=21  Identities=38%  Similarity=0.507  Sum_probs=17.7

Q ss_pred             cCCcEEEEEcCCCCchHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTK   59 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~   59 (114)
                      ..+.+.++-|.||+||||+..
T Consensus        12 ~~~~~alfFGLSGTGKTTLs~   32 (313)
T d2olra1          12 EKGDVAVFFGLSGTGKTTLST   32 (313)
T ss_dssp             TTSCEEEEECSTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            456888999999999999763

>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Thermus thermophilus [TaxId: 274]

Probab=89.85  E-value=0.096  Score=35.69  Aligned_cols=20  Identities=40%  Similarity=0.534  Sum_probs=17.2

Q ss_pred             cCCcEEEEEcCCCCchHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECT   58 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~   58 (114)
                      +++.+.++-|.||+||||+.
T Consensus        12 ~~~~valffGLSGTGKTTLs   31 (318)
T d1j3ba1          12 KEGDVAVFFGLSGTGKTTLS   31 (318)
T ss_dssp             TTCCEEEEEECTTSCHHHHT
T ss_pred             CCCCEEEEEccCCCCccccc
Confidence            35688899999999999975

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=89.34  E-value=0.12  Score=34.60  Aligned_cols=27  Identities=22%  Similarity=0.208  Sum_probs=22.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .-+||.++|.|.+|+|||+++..++.-
T Consensus        65 ig~GQr~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          65 IGRGQRELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             CBTTCBCEEEESTTSSHHHHHHHHHHH
T ss_pred             ccCCCEEEeecCCCCChHHHHHHHHHh
Confidence            568999999999999999998755543

>d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=89.24  E-value=0.13  Score=35.12  Aligned_cols=21  Identities=38%  Similarity=0.498  Sum_probs=17.8

Q ss_pred             cCCcEEEEEcCCCCchHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTK   59 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~   59 (114)
                      +++.+.++-|.||+||||+..
T Consensus        12 ~~gd~alfFGLSGTGKTTLs~   32 (323)
T d1ii2a1          12 KQGDVTVFFGLSGTGKTTLSA   32 (323)
T ss_dssp             TTCCEEEEECCTTSSHHHHHC
T ss_pred             CCCCEEEEEccCCCCccccee
Confidence            456788899999999999863

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=89.07  E-value=0.2  Score=32.78  Aligned_cols=26  Identities=31%  Similarity=0.442  Sum_probs=21.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .|+|+|.-|.||||+.-.+...+...
T Consensus         4 ~IaisgKGGVGKTT~a~NLA~~LA~~   29 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLVAALAEM   29 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHC
Confidence            46789999999999988887777644

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=88.69  E-value=0.29  Score=31.71  Aligned_cols=26  Identities=23%  Similarity=0.215  Sum_probs=19.6

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~~   63 (114)
                      ........|.|..|||||...-..+-
T Consensus        73 ~~~~~~~LL~GdvGsGKT~V~~~a~~   98 (233)
T d2eyqa3          73 QPLAMDRLVCGDVGFGKTEVAMRAAF   98 (233)
T ss_dssp             SSSCCEEEEECCCCTTTHHHHHHHHH
T ss_pred             ccCccCeEEEcCCCCCcHHHHHHHHH
Confidence            34456788999999999998754443

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.43  E-value=0.31  Score=30.33  Aligned_cols=28  Identities=29%  Similarity=0.437  Sum_probs=22.4

Q ss_pred             CcEEEEE-cCCCCchHHHHHHHHHHhhhh
Q psy7658          41 NQVVVIS-GESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        41 ~~~i~l~-G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +++|++. +.-|+||||+.-.++..+...
T Consensus         2 ~~vIav~~~kGGvGKTtia~nLA~~la~~   30 (237)
T d1g3qa_           2 GRIISIVSGKGGTGKTTVTANLSVALGDR   30 (237)
T ss_dssp             CEEEEEECSSTTSSHHHHHHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCcHHHHHHHHHHHHHhC
Confidence            4566666 889999999999888888753

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=87.98  E-value=0.12  Score=34.38  Aligned_cols=25  Identities=24%  Similarity=0.318  Sum_probs=21.3

Q ss_pred             hcCCcEEEEEcCCCCchHHHHHHHH
Q psy7658          38 TSGNQVVVISGESGSGKTECTKLVM   62 (114)
Q Consensus        38 ~~~~~~i~l~G~sGsGKst~~~~i~   62 (114)
                      .-++|.++|.|.+|+|||+++..++
T Consensus        64 ig~GQr~~Ifg~~g~GKt~l~~~~~   88 (276)
T d1fx0a3          64 VGRGQRELIIGDRQTGKTAVATDTI   88 (276)
T ss_dssp             CBTTCBCBEEESSSSSHHHHHHHHH
T ss_pred             ccCCceEeeccCCCCChHHHHHHHH
Confidence            4579999999999999999886543

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=87.56  E-value=0.16  Score=33.01  Aligned_cols=21  Identities=19%  Similarity=0.295  Sum_probs=18.4

Q ss_pred             EEEEEcCCCCchHHHHHHHHH
Q psy7658          43 VVVISGESGSGKTECTKLVMQ   63 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~   63 (114)
                      .|+++|..++||||++..++.
T Consensus        26 Ni~iiGHVD~GKSTL~~~Ll~   46 (245)
T d1r5ba3          26 NIVFIGHVDAGKSTLGGNILF   46 (245)
T ss_dssp             EEEEEECGGGTHHHHHHHHHH
T ss_pred             EEEEEeeCCCCHHHHHHHHHH
Confidence            388999999999999987754

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=86.56  E-value=0.14  Score=31.78  Aligned_cols=21  Identities=19%  Similarity=0.480  Sum_probs=16.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKL   60 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~   60 (114)
                      .+.-++++.|+|+|||.....
T Consensus        39 ~g~~vlv~apTGsGKT~~~~~   59 (206)
T d1oywa2          39 SGRDCLVVMPTGGGKSLCYQI   59 (206)
T ss_dssp             TTCCEEEECSCHHHHHHHHHH
T ss_pred             cCCCEEEEcCCCCCCcchhhh
Confidence            355688999999999987643

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=86.20  E-value=0.19  Score=31.28  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=17.1

Q ss_pred             CCcEEEEEcCCCCchHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKL   60 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~   60 (114)
                      .|+-+++..++|+|||...-+
T Consensus        37 ~G~dvii~a~TGSGKTlayll   57 (209)
T d1q0ua_          37 RGESMVGQSQTGTGKTHAYLL   57 (209)
T ss_dssp             HTCCEEEECCSSHHHHHHHHH
T ss_pred             CCCCeEeecccccccceeeee
Confidence            456799999999999986544

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.94  E-value=0.19  Score=34.44  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=19.8

Q ss_pred             EEEEEcCCCCchHHHHHHHHHHh
Q psy7658          43 VVVISGESGSGKTECTKLVMQYL   65 (114)
Q Consensus        43 ~i~l~G~sGsGKst~~~~i~~~~   65 (114)
                      .|+|+|..++||||++..++...
T Consensus        19 NI~iiGhvd~GKTTL~d~Ll~~~   41 (341)
T d1n0ua2          19 NMSVIAHVDHGKSTLTDSLVQRA   41 (341)
T ss_dssp             EEEEECCGGGTHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcHHHHHHHHHHHC
Confidence            39999999999999999887544

>d1hyqa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=85.85  E-value=0.53  Score=29.19  Aligned_cols=25  Identities=40%  Similarity=0.453  Sum_probs=20.7

Q ss_pred             EEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          44 VVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        44 i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      .+.++.-|+||||+.-.++..+...
T Consensus         5 av~s~KGGvGKTtia~nlA~~la~~   29 (232)
T d1hyqa_           5 TVASGKGGTGKTTITANLGVALAQL   29 (232)
T ss_dssp             EEEESSSCSCHHHHHHHHHHHHHHT
T ss_pred             EEECCCCCChHHHHHHHHHHHHHhC
Confidence            4456999999999999999888754

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.25  E-value=0.32  Score=32.07  Aligned_cols=26  Identities=27%  Similarity=0.381  Sum_probs=19.6

Q ss_pred             cCCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          39 SGNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        39 ~~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .......|.|..|||||...-..+..
T Consensus       102 ~~~m~rLL~GdvGSGKT~Va~~a~~~  127 (264)
T d1gm5a3         102 EKPMNRLLQGDVGSGKTVVAQLAILD  127 (264)
T ss_dssp             SSCCCCEEECCSSSSHHHHHHHHHHH
T ss_pred             cCcceeeeeccccccccHHHHHHHHH
Confidence            34456789999999999987655543

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=84.46  E-value=0.51  Score=29.32  Aligned_cols=25  Identities=24%  Similarity=0.199  Sum_probs=17.7

Q ss_pred             CCcEEEEEcCCCCchHHHHHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKLVMQY   64 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~i~~~   64 (114)
                      .+...++..++|+|||..+-.++..
T Consensus        84 ~~~~~ll~~~tG~GKT~~a~~~~~~  108 (206)
T d2fz4a1          84 VDKRGCIVLPTGSGKTHVAMAAINE  108 (206)
T ss_dssp             TTSEEEEEESSSTTHHHHHHHHHHH
T ss_pred             hCCCcEEEeCCCCCceehHHhHHHH
Confidence            3455678899999999875544443

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.21  E-value=0.5  Score=29.48  Aligned_cols=21  Identities=33%  Similarity=0.286  Sum_probs=17.5

Q ss_pred             CCcEEEEEcCCCCchHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKL   60 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~   60 (114)
                      +|+-+++..++|+|||...-+
T Consensus        37 ~g~dvl~~A~TGsGKTla~~l   57 (207)
T d1t6na_          37 LGMDVLCQAKSGMGKTAVFVL   57 (207)
T ss_dssp             TTCCEEEECCTTSCHHHHHHH
T ss_pred             cCCCeEEEecccccccccccc
Confidence            466799999999999987654

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.63  E-value=0.46  Score=31.81  Aligned_cols=19  Identities=32%  Similarity=0.410  Sum_probs=16.9

Q ss_pred             CCcEEEEEcCCCCchHHHH
Q psy7658          40 GNQVVVISGESGSGKTECT   58 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~   58 (114)
                      .+-+++..|.+|+|||..+
T Consensus        75 ~n~~i~aYGqtgSGKTyT~   93 (323)
T d1bg2a_          75 YNGTIFAYGQTSSGKTHTM   93 (323)
T ss_dssp             CCEEEEEECSTTSSHHHHH
T ss_pred             CCcceeeecccCCCCceec
Confidence            4778999999999999976

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.47  E-value=0.4  Score=30.14  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=17.6

Q ss_pred             CCcEEEEEcCCCCchHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKL   60 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~   60 (114)
                      .|+-+++.+++|+|||...-+
T Consensus        46 ~g~dvl~~a~TGsGKT~a~~l   66 (212)
T d1qdea_          46 EGHDVLAQAQSGTGKTGTFSI   66 (212)
T ss_dssp             TTCCEEEECCTTSSHHHHHHH
T ss_pred             cCCCEEeecccccchhhhhHh
Confidence            567799999999999987654

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=81.52  E-value=0.33  Score=33.28  Aligned_cols=19  Identities=37%  Similarity=0.448  Sum_probs=16.3

Q ss_pred             CCcEEEEEcCCCCchHHHH
Q psy7658          40 GNQVVVISGESGSGKTECT   58 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~   58 (114)
                      .+.+++..|.+|+|||..+
T Consensus       124 ~n~ti~aYGqtGSGKT~Tm  142 (368)
T d2ncda_         124 YNICIFAYGQTGSGKTYTM  142 (368)
T ss_dssp             CEEEEEEECSTTSSHHHHH
T ss_pred             cceeEEeeccCCCccceEe
Confidence            4678889999999999765

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=81.43  E-value=0.32  Score=33.28  Aligned_cols=19  Identities=37%  Similarity=0.434  Sum_probs=16.4

Q ss_pred             CCcEEEEEcCCCCchHHHH
Q psy7658          40 GNQVVVISGESGSGKTECT   58 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~   58 (114)
                      .+-+++..|.+|+|||..+
T Consensus        74 ~n~~i~aYGqTGSGKTyTm   92 (364)
T d1sdma_          74 YNVCIFAYGQTGSGKTFTI   92 (364)
T ss_dssp             CEEEEEEECSTTSSHHHHH
T ss_pred             CceeeeccccCCCCccccc
Confidence            3677888999999999985

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=81.18  E-value=0.46  Score=32.06  Aligned_cols=19  Identities=37%  Similarity=0.434  Sum_probs=16.6

Q ss_pred             CCcEEEEEcCCCCchHHHH
Q psy7658          40 GNQVVVISGESGSGKTECT   58 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~   58 (114)
                      .+.+++..|.+|+|||..+
T Consensus        82 ~n~~i~aYGqtgSGKT~T~  100 (342)
T d1f9va_          82 YNVCIFAYGQTGSGKTFTM  100 (342)
T ss_dssp             CCEEEEEECCTTSSHHHHH
T ss_pred             cccceeeeeccCCcccccc
Confidence            4778889999999999876

>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase MurC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribokinase-like
superfamily: MurD-like peptide ligases, catalytic domain
family: MurCDEF
domain: UDP-N-acetylmuramate-alanine ligase MurC
species: Thermotoga maritima [TaxId: 2336]

Probab=81.11  E-value=1.3  Score=27.13  Aligned_cols=31  Identities=26%  Similarity=0.419  Sum_probs=24.2

Q ss_pred             chhcCCcEEEEEcCCCCchHHHHHHHHHHhhhh
Q psy7658          36 LATSGNQVVVISGESGSGKTECTKLVMQYLAAV   68 (114)
Q Consensus        36 l~~~~~~~i~l~G~sGsGKst~~~~i~~~~~~~   68 (114)
                      +.....++++|+|.+  ||||...++...+...
T Consensus         9 l~~~~~~~iAITGTn--GKTTt~~~l~~iL~~~   39 (207)
T d1j6ua3           9 LKREKKEEFAVTGTD--GKTTTTAMVAHVLKHL   39 (207)
T ss_dssp             HHHHCCCEEEEECSS--SHHHHHHHHHHHHHHT
T ss_pred             HhhcCCCEEEEECCC--CHHHHHHHHHHHHHhC
Confidence            345567899999986  7999988888877654

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.26  E-value=0.7  Score=28.60  Aligned_cols=21  Identities=19%  Similarity=0.385  Sum_probs=16.8

Q ss_pred             CCcEEEEEcCCCCchHHHHHH
Q psy7658          40 GNQVVVISGESGSGKTECTKL   60 (114)
Q Consensus        40 ~~~~i~l~G~sGsGKst~~~~   60 (114)
                      .|+-+++.+++|+|||...-.
T Consensus        37 ~g~dvi~~a~tGsGKTlay~l   57 (206)
T d1s2ma1          37 TGRDILARAKNGTGKTAAFVI   57 (206)
T ss_dssp             HTCCEEEECCTTSCHHHHHHH
T ss_pred             cCCCEEEecCCcchhhhhhcc
Confidence            356699999999999976543