Psyllid ID: psy7666

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350
Protein Sequence
MSNVQSLIYFVVTRRTTQVESFDKKKIISSEFTLKIPTLSESTCLYLQPLPEARYLSFKFQDCHCETSIQKRPFPPDLLLLLVIRILCTVLRISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMTK
Secondary Structure (PSIPRED)
cccccEEEEEEEEEcccEEEccccccccccccEEccccccccccccccccHHHHHHHHccccccccccccccccccEEEEccHHHHHHHHHcccccEEEEEccccccEEEEEEEEcccEEEEEcccccccccccHHHHHHHHHHcccccccccccccccccccEEEEEccEEEEccccccccccccccccHHHHHHHHcHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHcccccccccccHHHHHHHcccccEEEEEcccHHHHHHHHHHHcccccEEEEcccEEEEEEccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEEEEccccEEEEcccccEEEccEEEEccccccccEEEcccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEccccccEEEEEEccccEEEEcccccccccccccHHHHHHHHHccccccEEEccccccccccEEEEEcccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHcHHHHHHHHHHHHcccccccHHHccHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccccccccccccccccEEcHHHHHHHHHHHHHHHHccccEEEEccEEEEEEEcccccEEEccccccccc
Coil and Loop (DISEMBL)
MSNVQSLIYFVVTrrttqvesfdkkkiisseftlkiptlsestclylqplpearylsfkfqdchcetsiqkrpfppdLLLLLVIRILCTVLRIstpitllesssrlggwvrsvqspeglifekgprtirpkgrlganTLKLVEdlgladqvipitsshptaqNRLIYVNKKlhklpsnffslfkthspfskplIFSILhdlttktvpksdesIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMskrpdlsgyeeseLYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGvkavdqpihqmtk
Flexible Loop (DISEMBL)
msnvqsliyfvvtrrttqvesfdkkkiisseftlkiptlsesTCLYLQPLPEARYLSFKFQDCHCETSIQKRPFPPDLLLLLVIRILCTVLRISTpitllesssrlggwvrsvqspeglifekgprtirpkgrlGANTLKLVEDLGLADQVIpitsshptaQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLttktvpksdeSIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMmskrpdlsgyeeseLYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFlekgvkavdqpihqmtk
Low Complexity Region (SEG)
MSNVQSLIYFVVTRRTTQVESFDKKKIISSEFTLKIPTLSESTCLYLQPLPEARYLSFKFQDCHCETSIQKRPFPPDlllllvirilctvlriSTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMTK
Disordered region (IsUnstruct)
*****SLIYFVVTRRTTQVESFDKKKIISSEFTLKIPTLSESTCLYLQPLPEARYLSFKFQDCHCETSIQKRPFPPDLLLLLVIRILCTVLRISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKE**************ELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKA**********
Disordered Region (DISOPRED)
****QSLIYFVVTRRTTQVESFDKKKIISSEFTLKIPTLSESTCLYLQPLPEARYLSF*******************LLLLLVIRILCTVLRISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAI****************************VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVK***********
Disordered Region (DISEMBL)
MSNVQSLIYFVVTRRTTQVESFDKKKIISSEFTLKIPTLSESTCLYLQPLPEARYLSFKFQDCHCETSIQKRPFPPDLLLLLVIRILCTVLRISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMTK
Disordered Region (DISPRO)
**NVQSLIYFVVTRRTTQVESFDKKKIISSEFTLKIPTLSESTCLYLQPLPEARYLSFKFQDCHCETSIQKRPFPPDLLLLLVIRILCTVLRISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKR*****************EKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQ*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSNVQSLIYFVVTRRTTQVESFDKKKIISSEFTLKIPTLSESTCLYLQPLPEARYLSFKFQDCHCETSIQKRPFPPDLLLLLVIRILCTVLRISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMTK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	350	2.2.26 [Sep-21-2011]
P50336	477	Protoporphyrinogen oxidas	yes	N/A	0.62	0.454	0.424	7e-48
P51175	477	Protoporphyrinogen oxidas	yes	N/A	0.62	0.454	0.424	1e-47
Q60HD5	477	Protoporphyrinogen oxidas	N/A	N/A	0.62	0.454	0.424	2e-47
Q10062	490	Protoporphyrinogen oxidas	yes	N/A	0.645	0.461	0.322	9e-27
Q94IG7	531	Protoporphyrinogen oxidas	N/A	N/A	0.651	0.429	0.261	1e-15
O24164	504	Protoporphyrinogen oxidas	N/A	N/A	0.597	0.414	0.287	5e-14
P32397	470	Protoporphyrinogen oxidas	yes	N/A	0.574	0.427	0.280	2e-13
Q54DT8	532	Protoporphyrinogen oxidas	yes	N/A	0.597	0.392	0.273	8e-12
P55826	537	Protoporphyrinogen oxidas	no	N/A	0.682	0.445	0.258	1e-11
P56601	471	Protoporphyrinogen oxidas	yes	N/A	0.577	0.428	0.263	2e-11

>sp|P50336|PPOX_HUMAN Protoporphyrinogen oxidase OS=Homo sapiens GN=PPOX PE=1 SV=1

 Score =  191 bits (485), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 7/224 (3%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           + L+ESS RLGGW+RSV+ P G IFE GPR IRP G LGA TL LV +LGL  +V+P+  
Sbjct: 30  VVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRG 89

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
            HP AQNR +YV   LH LP+    L +   PFSKPL ++ L +LT     + DE+++ F
Sbjct: 90  DHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETVHSF 149

Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM-MSK 275
             RR G EVA  A+ S+  G+ AG+++++S+      LF+ EQ H  ++ G +     + 
Sbjct: 150 AQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTP 209

Query: 276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
           +PD      S L R++  E+WS WS+ GGL+ +   L  HL+++
Sbjct: 210 QPD------SALIRQALAERWSQWSLRGGLEMLPQALETHLTSR 247

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
Homo sapiens (taxid: 9606)
EC: 1EC: .EC: 3EC: .EC: 3EC: .EC: 4

>sp|P51175|PPOX_MOUSE Protoporphyrinogen oxidase OS=Mus musculus GN=Ppox PE=2 SV=1

 Score =  190 bits (483), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 136/224 (60%), Gaps = 7/224 (3%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           + L+E S RLGGW+RS++  +G IFE GPR IRP G LGA TL LV +LGL  +V+P+  
Sbjct: 30  VILVEGSKRLGGWIRSIRGSDGAIFELGPRGIRPAGALGARTLLLVSELGLESEVLPVRG 89

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
            HP AQNR +YV   LH LPS    L +   PFSKPL ++ L +L      + DE+++ F
Sbjct: 90  DHPAAQNRFLYVGGTLHPLPSGLRGLLRPSPPFSKPLFWAGLRELLKPRGKEPDETVHSF 149

Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM-MSK 275
             RR G EVA  A+ S+  G+ AG+++++S+      LF+ EQ H  ++ G +     S 
Sbjct: 150 AQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGQSP 209

Query: 276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
           +PD      S L R++R E+WS WS+ GGL+ +   L  HL++K
Sbjct: 210 QPD------SSLIRQARAERWSQWSLRGGLEVLPQALHNHLASK 247

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

>sp|Q60HD5|PPOX_MACFA Protoporphyrinogen oxidase OS=Macaca fascicularis GN=PPOX PE=2 SV=1

 Score =  190 bits (482), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 136/224 (60%), Gaps = 7/224 (3%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           + L+E S RLGGW+RSV+ P G IFE GPR IRP G LGA TL LV +LGL  +V+P+  
Sbjct: 30  VVLVEGSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRG 89

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
            HP AQNR +YV   LH LP+    L +   PFSKPL ++ L +LT     + DE+++ F
Sbjct: 90  DHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETVHSF 149

Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM-MSK 275
             RR G EVA  A+ S+  G+ AG+++++S+      LF+ EQ H  V+ G +     + 
Sbjct: 150 AQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSVLLGLLLGAGRTP 209

Query: 276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
           +PD      S L R++  E+WS WS+ GGL+ +   L  HL+++
Sbjct: 210 QPD------SALIRQALAERWSQWSLRGGLEMLPQALETHLTSR 247

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

>sp|Q10062|PPOX_SCHPO Protoporphyrinogen oxidase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hem14 PE=3 SV=1

 Score =  121 bits (303), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 80/248 (32%), Positives = 141/248 (56%), Gaps = 22/248 (8%)

Query: 97  ITLLESSSRLGGWVRSVQ-----SPEG-LIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ 150
           I L E   RLGGW++SV+     SP G ++FE+GPRT+RP G  G   L L+  LG+ D+
Sbjct: 28  IDLYEKGPRLGGWLQSVKIPCADSPTGTVLFEQGPRTLRPAGVAGLANLDLISKLGIEDK 87

Query: 151 VIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKT-HSPFSKPLIFSILHDLTTKTVPKS 209
           ++ I+S+ P+A+NR IY   +L+++PS+     K+   P  +P+  +++ +   K+   S
Sbjct: 88  LLRISSNSPSAKNRYIYYPDRLNEIPSSILGSIKSIMQPALRPMPLAMMLEPFRKSKRDS 147

Query: 210 -DESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLM-AKLFELEQLHGGVIKG 267
            DES+  F+ RRFG  V D  +S+MI GI AGD   +S++  M   L ++E+ +G +  G
Sbjct: 148 TDESVGSFMRRRFGKNVTDRVMSAMINGIYAGDLNDLSMHSSMFGFLAKIEKKYGNITLG 207

Query: 268 AIKEMMS-----------KRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL 316
            I+ +++           K   L+  + +EL   + ++  S+++ + G++TI  ++ + L
Sbjct: 208 LIRALLAREILSPAEKALKAALLAEPKTAEL--SNSMKSTSMFAFKEGIETITLSIADEL 265

Query: 317 SNKVEVKM 324
                VK+
Sbjct: 266 KKMPNVKI 273

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

>sp|Q94IG7|PPOCM_SPIOL Protoporphyrinogen oxidase, chloroplastic/mitochondrial OS=Spinacia oleracea GN=POX2 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 122/249 (48%), Gaps = 21/249 (8%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           +TL E+ SR GG +++V   +GLI+++G  T+            L +DLG+ +++     
Sbjct: 68  VTLFEADSRAGGKLKTVVK-DGLIWDEGANTMTESDE---EVTSLFDDLGIREKL----- 118

Query: 157 SHPTAQNRLIYVNKKLHKL-PSNFFSLFKTHSPFSKPLIFSIL-------HDLTTKTVPK 208
             P +QN+       L  L PSN  +L K++   +K  +  +L       H+    +   
Sbjct: 119 QLPISQNKRYIARDGLPVLLPSNPVALLKSNILSAKSKLQIMLEPFLWKKHNGAKVSDEN 178

Query: 209 SDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA 268
           + ES+ +F  R FG E  DY +   + G   GD + +S+     +L+ +E   G VI G 
Sbjct: 179 AQESVAEFFERHFGKEFVDYLIDPFVAGTSGGDPQSLSMRHAFPELWNIENRFGSVISGF 238

Query: 269 IKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTC 328
           I+  +S + +  G ++S   ++ R+     +S +GG+QT+V+T+ +      E+K+ +  
Sbjct: 239 IQSKLSSKKEKGGEKQSS-NKKPRVR--GSFSFQGGMQTLVDTICKEFGED-ELKLQSEV 294

Query: 329 TNLEFLEKG 337
            +L +   G
Sbjct: 295 LSLSYSHNG 303

Provides precursor for the mitochondrial and plastidic heme synthesis and the predominant chlorophyll synthesis in plastids.

Spinacia oleracea (taxid: 3562)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

>sp|O24164|PPOM_TOBAC Protoporphyrinogen oxidase, mitochondrial OS=Nicotiana tabacum GN=PPXII PE=1 SV=1

 Score = 79.0 bits (193), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 108/226 (47%), Gaps = 17/226 (7%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           +T+ E+  + GG +RSV S +GLI+++G  T+        +   L++ LGL ++      
Sbjct: 39  VTVFEAEGKAGGKLRSV-SQDGLIWDEGANTMTESE---GDVTFLIDSLGLREK-----Q 89

Query: 157 SHPTAQN-RLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKT-----VPKSD 210
             P +QN R I  N     LPSN   L K++   +   +  +L  +  K      V  S 
Sbjct: 90  QFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSH 149

Query: 211 ESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIK 270
           ES+  F  R FG EV DY +   + G C GD   +S++    +L+ LE+  G VI GAI+
Sbjct: 150 ESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIR 209

Query: 271 EMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL 316
             +S + +           + R  +   +S  GG+QT+ + + + L
Sbjct: 210 SKLSPKNEKKQGPPKTSANKKR--QRGSFSFLGGMQTLTDAICKDL 253

Provides precursor for the mitochondrial and plastidic heme synthesis and the predominant chlorophyll synthesis in plastids.

Nicotiana tabacum (taxid: 4097)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

>sp|P32397|PPOX_BACSU Protoporphyrinogen oxidase OS=Bacillus subtilis (strain 168) GN=hemY PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 117/228 (51%), Gaps = 27/228 (11%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           +TL+E+S R+GG +++V+  +G I E+GP +   + +   +  +LV+DLGL   ++    
Sbjct: 37  LTLVEASPRVGGKIQTVKK-DGYIIERGPDSFLERKK---SAPQLVKDLGLEHLLV---- 88

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTH-SPFSKPLIFSI-------LHDLTTKTVPK 208
           ++ T Q+ ++ VN+ LH +P        T  +PF    +FS+       +  +   +  K
Sbjct: 89  NNATGQSYVL-VNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTK 147

Query: 209 SDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA 268
            D+S+ +F  RR G EV +  +  ++ GI AGD  K+S+     + ++ EQ H  +I G 
Sbjct: 148 DDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILG- 206

Query: 269 IKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL 316
              M   RP  SG ++    ++ + +  S      GLQT+V  + + L
Sbjct: 207 ---MKKTRPQGSG-QQLTAKKQGQFQTLST-----GLQTLVEEIEKQL 245

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. Also oxidizes the pathway intermediate coproporphyrinogen-III.

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

>sp|Q54DT8|PPOX_DICDI Protoporphyrinogen oxidase OS=Dictyostelium discoideum GN=ppox PE=3 SV=1

 Score = 71.6 bits (174), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 66/241 (27%), Positives = 115/241 (47%), Gaps = 32/241 (13%)

Query: 97  ITLLESSSRLGGWV--RSVQS---PEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV 151
           I + E S+++GG +  R +Q     E +I E+GPR++R  GR G NTL+ ++ LG+++ +
Sbjct: 38  INIFEKSNKVGGNIQTRIIQGKNKDEKIIVEEGPRSLRALGR-GLNTLEFIKRLGISNDI 96

Query: 152 IPITSSHPTAQNRLIYVNKKLHKLP-SNFFSLFKTHSPFSKPLIFSILHDLTTKT----- 205
           I    S   +  + + ++ K  ++P ++ F + K    F   ++ SIL +   K      
Sbjct: 97  I---FSSANSNGKFVLLDGKPKEIPMTSLFDIIKF--SFKHSIVSSILKEPFKKVPSQVK 151

Query: 206 --VPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGG 263
              P  DES++DF SRR G  +    +   I GI  GD   +S+     +   LE   G 
Sbjct: 152 EMDPNWDESVHDFFSRRLGKTMTKTFIEPTILGIYGGDYTNLSIKSTFKRAALLEPFGGL 211

Query: 264 VIKGAIKEMMSKRPDL-----------SGYEESELYRRSRIEKWSVWSV-EGGLQTIVNT 311
           ++    K    K+ +L           S  E +EL+ +   +K +V+S  E GL  ++  
Sbjct: 212 ILGSLFKSKKQKQFELDLDKNEKRLLPSKNELTELFDKD-TDKTNVFSFKENGLSRMIQK 270

Query: 312 L 312
           L
Sbjct: 271 L 271

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.

Dictyostelium discoideum (taxid: 44689)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

>sp|P55826|PPOC_ARATH Protoporphyrinogen oxidase, chloroplastic OS=Arabidopsis thaliana GN=PPOX PE=2 SV=1

 Score = 71.2 bits (173), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/263 (25%), Positives = 116/263 (44%), Gaps = 24/263 (9%)

Query: 81  LLVIRILCTVLRISTP-ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTL 139
           L + + L T    + P + + E+  R+GG + + +   G ++E+GP + +P   +    L
Sbjct: 69  LCIAQALATKHPDAAPNLIVTEAKDRVGGNIITREE-NGFLWEEGPNSFQPSDPM----L 123

Query: 140 KLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSN-----FFSLFKTHSPFSKPLI 194
            +V D GL D ++      PTA  R +  N KL  +PS      FF L            
Sbjct: 124 TMVVDSGLKDDLV---LGDPTAP-RFVLWNGKLRPVPSKLTDLPFFDLMSIGGKIRAG-- 177

Query: 195 FSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKL 254
           F  L      + P  +ES+ +FV R  G EV +  +     G+ AGD  K+S+     K+
Sbjct: 178 FGALG--IRPSPPGREESVEEFVRRNLGDEVFERLIEPFCSGVYAGDPSKLSMKAAFGKV 235

Query: 255 FELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGE 314
           ++LEQ  G +I G  K +  ++       +  L    + +  +V S   GL+ +   +  
Sbjct: 236 WKLEQNGGSIIGGTFKAIQERKNAPKAERDPRL---PKPQGQTVGSFRKGLRMLPEAISA 292

Query: 315 HLSNKVEVKMDTTCTNLEFLEKG 337
            L +K  VK+    + +  LE G
Sbjct: 293 RLGSK--VKLSWKLSGITKLESG 313

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.

Arabidopsis thaliana (taxid: 3702)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

>sp|P56601|PPOX_MYXXA Protoporphyrinogen oxidase OS=Myxococcus xanthus GN=hemY PE=1 SV=1

 Score = 70.5 bits (171), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 41/243 (16%)

Query: 94  STPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTI---RPKGRLGANTLKLVEDLGLADQ 150
            T   LLESS+RLGG V    +  G + E+GP +     P  R  A  L L   +  AD 
Sbjct: 32  GTDAVLLESSARLGGAV-GTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIRAAD- 89

Query: 151 VIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHS-PFSKPLIFSILHDLTTKTVPKS 209
                   P A+ R +Y   +L  +P++  +   +   P    L   +  +L ++  P+ 
Sbjct: 90  --------PAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARL--RVAGELFSRRAPEG 139

Query: 210 -DESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA 268
            DES+  F  R  G       + ++  GI AGD +++SV      L ++E+ H  +I GA
Sbjct: 140 VDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGA 199

Query: 269 IKEMMSKR---------PDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
           I+   ++R         P LSG               ++ + +GGLQ +++ L   L + 
Sbjct: 200 IRAQKAQRQAALPAGTAPKLSG---------------ALSTFDGGLQVLIDALAASLGDA 244

Query: 320 VEV 322
             V
Sbjct: 245 AHV 247

Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX. May have an essential extracellular function during development, possibly as a pheromone.

Myxococcus xanthus (taxid: 34)

EC: 1

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
91077384	467	PREDICTED: similar to Protoporphyrinogen	0.66	0.494	0.537	4e-67
157138076	475	Protoporphyrinogen IX oxidase, putative	0.688	0.507	0.506	3e-65
357613208	472	protoporphyrinogen oxidase [Danaus plexi	0.671	0.497	0.508	1e-63
58384867	478	AGAP003704-PA [Anopheles gambiae str. PE	0.64	0.468	0.512	1e-62
312373753	475	hypothetical protein AND_17038 [Anophele	0.685	0.505	0.530	8e-62
170038831	477	protoporphyrinogen oxidase [Culex quinqu	0.688	0.505	0.485	2e-61
195445936	479	GK12118 [Drosophila willistoni] gi|19416	0.702	0.513	0.460	6e-59
307171010	477	Protoporphyrinogen oxidase [Camponotus f	0.685	0.503	0.464	5e-58
289741937	479	protoporphyrinogen oxidase [Glossina mor	0.702	0.513	0.465	6e-58
156543796	474	PREDICTED: protoporphyrinogen oxidase-li	0.677	0.5	0.485	6e-58

>gi|91077384|ref|XP_975249.1| PREDICTED: similar to Protoporphyrinogen IX oxidase, putative [Tribolium castaneum] gi|270001648|gb|EEZ98095.1| hypothetical protein TcasGA2_TC000508 [Tribolium castaneum]

 Score =  261 bits (667), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 128/238 (53%), Positives = 167/238 (70%), Gaps = 7/238 (2%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           +TL+ESSSR GGW++S     G IFE+GPRTIRP+G  GANTL+L+E+L L+DQ++PITS
Sbjct: 28  VTLIESSSRTGGWIKSSVQENGAIFEQGPRTIRPRGDAGANTLQLIEELNLSDQIVPITS 87

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
            HP A+NRLIY N  LH LPS+   LF+   PFSKPLI  +L+DL  +     DESIYDF
Sbjct: 88  GHPAAKNRLIYANGSLHLLPSSLTGLFRKQEPFSKPLILHLLNDLKARRKEVKDESIYDF 147

Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMM--S 274
           + RRFGSEVADY +S +ICGICAG+AK+ISV FLM +LFE EQ HG V KG +  +   S
Sbjct: 148 IGRRFGSEVADYLISPLICGICAGNAKEISVKFLMKQLFEYEQKHGSVSKGLLTSLFAKS 207

Query: 275 KRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNL 331
           KRP +      E   R+R EKW+++S + G +T+   L  ++ SN V +K +T CT +
Sbjct: 208 KRPTVL----CETALRARSEKWNIYSFKNGCETLPIALRNNIVSNGVNIKFNTECTEI 261

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157138076|ref|XP_001657226.1| Protoporphyrinogen IX oxidase, putative [Aedes aegypti] gi|108880710|gb|EAT44935.1| AAEL003762-PA [Aedes aegypti]

 Score =  254 bits (650), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 125/247 (50%), Positives = 172/247 (69%), Gaps = 6/247 (2%)

Query: 93  ISTPITLLESSSRLGGWVRSVQ-SPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV 151
           + +P  + E+S+R+GGW+R+ + + +G +FE GPRTIRPKG   +NTL L+E++GLAD+V
Sbjct: 23  LPSPTVIYEASNRIGGWIRTDRFNEDGFVFEAGPRTIRPKGPAASNTLDLIEEVGLADEV 82

Query: 152 IPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTT--KTVPKS 209
            PI S+H  A+NR+IY   KL+ LPS+   + KT  PF+KPL F+   D+      VP  
Sbjct: 83  YPIYSNHVAARNRMIYAKGKLNMLPSDLSGVLKTVPPFTKPLFFAGFKDIFAGRSKVPLE 142

Query: 210 DESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAI 269
           DES+Y FV RRFG E+ADYAVSSM+CGICAGDAK+ISV FLM  LFE+EQ HGGV+KG +
Sbjct: 143 DESMYSFVERRFGKEIADYAVSSMLCGICAGDAKQISVKFLMKSLFEMEQKHGGVVKGML 202

Query: 270 KEMMSKRPDLSGYEE--SELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDT 326
           KE M+K+    G +E  S L +R++ E WS++S+ GGLQT+ + LG  L  N V ++ D 
Sbjct: 203 KEAMNKKGKKDGAKESISALAKRAKSENWSIYSIHGGLQTLPDRLGTVLHKNGVGIETDV 262

Query: 327 TCTNLEF 333
               + F
Sbjct: 263 KFEEIMF 269

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357613208|gb|EHJ68376.1| protoporphyrinogen oxidase [Danaus plexippus]

 Score =  249 bits (636), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 121/238 (50%), Positives = 170/238 (71%), Gaps = 3/238 (1%)

Query: 99  LLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH 158
           LLE++   GGW++S+++ +  IFE+GPRTIRP+G  G NTL +++DLGL++ +  I   H
Sbjct: 33  LLEATDYCGGWIKSIRTKD-YIFEQGPRTIRPRGPTGLNTLNMLQDLGLSEHISAIKPDH 91

Query: 159 PTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVS 218
           P A+NR+IYVN  LH LPS+   +F+   PFSKPLI++ L+DL        D+SIY+FV 
Sbjct: 92  PAAKNRMIYVNNSLHLLPSSIKGVFQKTEPFSKPLIYAALNDLKNPHKELKDDSIYNFVE 151

Query: 219 RRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPD 278
           RRFG E+ADYAVS MICGICAGDAK+ISV FLM  LFE EQ  GGVIKG +K +  K  +
Sbjct: 152 RRFGKEIADYAVSPMICGICAGDAKEISVKFLMKTLFEYEQNDGGVIKGLMKGLF-KTKN 210

Query: 279 LSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLE 335
            +  + S+L RR++ EKW+V+S++GGLQTI N + ++L  N V + +++    LEF++
Sbjct: 211 ETEIQLSDLARRAQEEKWNVYSIKGGLQTIPNKMSQYLQDNDVNLHLNSQIDELEFVD 268

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|58384867|ref|XP_313497.2| AGAP003704-PA [Anopheles gambiae str. PEST] gi|55241187|gb|EAA08942.3| AGAP003704-PA [Anopheles gambiae str. PEST]

 Score =  246 bits (628), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 120/234 (51%), Positives = 159/234 (67%), Gaps = 10/234 (4%)

Query: 96  PITLLESSSRLGGWVRSVQSPE-GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPI 154
           P+T+ E++ R+GGW+RS +SP+ G +FE GPRTIRPKG   +NTL+L+E+LGL DQV  I
Sbjct: 26  PLTIYEATDRIGGWIRSERSPDHGYVFEAGPRTIRPKGPAASNTLELIEELGLTDQVYSI 85

Query: 155 TSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTT--KTVPKSDES 212
           +S+H  A+NR+IY   KL+ LP++   + KT  PF++PL F+  HDL       P +DES
Sbjct: 86  SSNHTAARNRMIYAKGKLNLLPNSLGGVLKTVPPFTRPLYFAAFHDLLAGRSKTPLTDES 145

Query: 213 IYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM 272
           +Y FV RRFG E+ADYAVSSM+CGICAGDAK+ISV FLM  LFE EQ HGGVI G +KE 
Sbjct: 146 MYSFVERRFGKEIADYAVSSMLCGICAGDAKQISVKFLMKDLFEREQRHGGVIVGLLKEA 205

Query: 273 MSKRPDLS-------GYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
           +  R             + + L  R++ E WS++S+ GGLQT+  TL   L  K
Sbjct: 206 LQNRKKKQPKSVKKPATQMARLADRAKAENWSIYSIRGGLQTLPETLATDLQAK 259

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312373753|gb|EFR21443.1| hypothetical protein AND_17038 [Anopheles darlingi]

 Score =  243 bits (621), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 131/247 (53%), Positives = 171/247 (69%), Gaps = 7/247 (2%)

Query: 94  STPITLLESSSRLGGWVRSVQSP-EGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152
           S P+T+ E+S R+GGW+RS +S  +  IFE GPRTIRPKG   ANTL+L+E LGLAD V 
Sbjct: 24  SLPLTIYEASDRVGGWIRSERSAKDDFIFETGPRTIRPKGTAAANTLELIEHLGLADHVY 83

Query: 153 PITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTT--KTVPKSD 210
            I+SSH  A+NR+IY   KL+ LPS+   L KT  PF+KPL F+  HDL       P  D
Sbjct: 84  SISSSHTAARNRMIYAKGKLNLLPSSLGGLLKTVPPFTKPLYFAAFHDLLAGRSESPLQD 143

Query: 211 ESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIK 270
           ES+Y FV+RRFG E+ADYAVSSM+CGICAG+AK+ISV FLM +LFE EQ HGGVIKG +K
Sbjct: 144 ESMYSFVNRRFGKEIADYAVSSMLCGICAGNAKEISVKFLMKELFEREQQHGGVIKGILK 203

Query: 271 EMM---SKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK-VEVKMDT 326
           E +   +K+   +G    +L +R++ E WS++S+ GGLQT+ +TL   L +K V +   T
Sbjct: 204 EALVNRNKKKPTTGTPLGKLAQRAKSENWSIYSLRGGLQTLPDTLATDLQSKGVSIVTGT 263

Query: 327 TCTNLEF 333
               L+F
Sbjct: 264 KFEELKF 270

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170038831|ref|XP_001847251.1| protoporphyrinogen oxidase [Culex quinquefasciatus] gi|167862442|gb|EDS25825.1| protoporphyrinogen oxidase [Culex quinquefasciatus]

 Score =  242 bits (617), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 120/247 (48%), Positives = 167/247 (67%), Gaps = 6/247 (2%)

Query: 93  ISTPITLLESSSRLGGWVRSVQ-SPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV 151
           + +P  + E+SSR+GGW+R+ +   EG +FE GPRTIRPKG    NTL L+E++GL + V
Sbjct: 23  LPSPPVIYEASSRIGGWIRTERFDGEGYVFEAGPRTIRPKGPAARNTLDLIEEVGLGEHV 82

Query: 152 IPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPK--S 209
            PI S+H  A+NR+IY   +L+ LPS+   + KT  PF+KPL F+ L DL      K   
Sbjct: 83  HPIFSNHVAARNRMIYAKGRLNMLPSDLSGVVKTVPPFTKPLFFAGLKDLFGGKSRKKLD 142

Query: 210 DESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAI 269
           DE++Y FV RRFG E+ADYA+SSM+CGICAGDAK+ISV FLM  LFE+EQ HGGV+KG +
Sbjct: 143 DEAMYSFVERRFGKEIADYAISSMLCGICAGDAKQISVKFLMKSLFEVEQKHGGVVKGML 202

Query: 270 KEMMSKRPDLSGYEE--SELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDT 326
            E + K+   S  +     L +R++ E WS++S++GGLQT+ N L   L   +V+++ D 
Sbjct: 203 MEALGKKDKNSSKQVPLEGLAKRAKSENWSIYSIQGGLQTLPNRLKSVLDEGQVDIRTDV 262

Query: 327 TCTNLEF 333
            C  +EF
Sbjct: 263 KCEEIEF 269

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195445936|ref|XP_002070551.1| GK12118 [Drosophila willistoni] gi|194166636|gb|EDW81537.1| GK12118 [Drosophila willistoni]

 Score =  234 bits (596), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 118/256 (46%), Positives = 166/256 (64%), Gaps = 10/256 (3%)

Query: 92  RISTPITLLESSSRLGGWVRS-VQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ 150
           R   P+T+ E+S R+GGW+RS      G +FE GPRTIRP G  GANT+++VE L L  +
Sbjct: 22  RFGKPLTIYEASPRVGGWIRSETHKDRGFLFESGPRTIRPVGLPGANTMEIVEQLNLPVR 81

Query: 151 VIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKT--VPK 208
            IP   SH  A+NR++Y   ++  LP++   LF T  PFS+PL  + +HDL  K+     
Sbjct: 82  AIP--RSHVAAKNRMLYAKGQVCMLPNSPMGLFGTKPPFSQPLYKAFIHDLLAKSTLAKH 139

Query: 209 SDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA 268
            DESIY F  RRFG E+ADYA+S MICGICAGDA++ISV FLM  LFE EQ +GGV+KG 
Sbjct: 140 GDESIYSFAERRFGKEIADYAISPMICGICAGDAREISVRFLMDGLFEKEQKYGGVLKGL 199

Query: 269 I----KEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVK 323
                KE  S +P +   E++++Y +S+ EKW+++ ++GGL+ +   L ++L  N V V+
Sbjct: 200 FYARYKEKNSTKPGIFAQEQTKMYLQSKQEKWAMYGMDGGLEQLPRALRKYLGENDVNVQ 259

Query: 324 MDTTCTNLEFLEKGVK 339
           +   C NL F + GV+
Sbjct: 260 LSNPCRNLTFSDNGVR 275

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307171010|gb|EFN63073.1| Protoporphyrinogen oxidase [Camponotus floridanus]

 Score =  231 bits (588), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 117/252 (46%), Positives = 160/252 (63%), Gaps = 12/252 (4%)

Query: 94  STPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIP 153
           ++ ITLLE+S+R+GGW+RS +SP G IFE+GPRTIRP G  G NTL LVEDL L +++I 
Sbjct: 24  NSAITLLEASNRVGGWIRSKRSPSGAIFEQGPRTIRPVGLAGKNTLNLVEDLQLNNKLIH 83

Query: 154 ITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESI 213
           I  SHP  QNRLIY ++ LH LP++    FKT S   +PLI  +  DL    + K DESI
Sbjct: 84  IGRSHPATQNRLIYSDEALHLLPTSLKGFFKTLSLLDRPLINCLWTDLAAPKISKEDESI 143

Query: 214 YDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA----I 269
           Y+FV RR G ++AD  VS ++CGICAGDA+KISVNFL+  LFE EQ +G ++KG     +
Sbjct: 144 YNFVQRRLGQDIADNLVSPIVCGICAGDAQKISVNFLLKSLFEAEQKYGSIVKGVLANRL 203

Query: 270 KEMMSKRPDL-------SGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK-VE 321
           K+  SK  D        S      L  R++ E W++W +EGGL+ +   L  ++  + V 
Sbjct: 204 KKFFSKSKDTVKENNIDSANLHLTLANRAQKEYWALWGLEGGLEQLPQALANNVRKRGVR 263

Query: 322 VKMDTTCTNLEF 333
           ++ +  C  L F
Sbjct: 264 IQTEAKCEKLTF 275

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|289741937|gb|ADD19716.1| protoporphyrinogen oxidase [Glossina morsitans morsitans]

 Score =  231 bits (588), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 122/262 (46%), Positives = 168/262 (64%), Gaps = 16/262 (6%)

Query: 92  RISTPITLLESSSRLGGWVRSVQSPE-GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ 150
           R   P  + ESS+RLGGW+R+    + G IFE GPRTIRP+G  GANTL+++EDL L  +
Sbjct: 21  RFGKPAAIFESSNRLGGWIRTENHQDKGFIFELGPRTIRPRGAAGANTLEMIEDLHLPTE 80

Query: 151 VIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDL--TTKTVPK 208
              I S+H  A+NR+IY   +L  LP+N   +F T  PFSKPL  ++ HDL  ++K +  
Sbjct: 81  --SIRSTHIAAKNRMIYAKGELCLLPNNLGGIFATRPPFSKPLYTALFHDLQASSKKIKY 138

Query: 209 SDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA 268
            DESIY FV RRFGSE+ADYA+S MICGICAGDAK+ISV FLM  LFE EQ +GGV+KG 
Sbjct: 139 GDESIYSFVKRRFGSELADYAISPMICGICAGDAKEISVRFLMNDLFETEQQYGGVVKGF 198

Query: 269 IKEMMSKRPDL-SGYEES---------ELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL-S 317
               +  R ++  G+  S          LY+R+  E+WS++ +  GL+T+   L  +L S
Sbjct: 199 FLSKLKGRKEVRDGHINSPGIFVENMPSLYQRAVKERWSMYRLIDGLETLPKALETYLRS 258

Query: 318 NKVEVKMDTTCTNLEFLEKGVK 339
             +E+ + + CT + F + GV+
Sbjct: 259 RNIEINLSSECTKILFGDDGVR 280

Source: Glossina morsitans morsitans

Species: Glossina morsitans

Genus: Glossina

Family: Glossinidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543796|ref|XP_001606425.1| PREDICTED: protoporphyrinogen oxidase-like [Nasonia vitripennis]

 Score =  230 bits (587), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 119/245 (48%), Positives = 155/245 (63%), Gaps = 8/245 (3%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           I L E+S+RLGGW+RSV +P G+IFEKGPRTIR +G  G NTL+L+ DL L+D+V+ +  
Sbjct: 27  IVLYEASNRLGGWIRSVTAPSGVIFEKGPRTIRSEGAAGENTLQLISDLNLSDKVVAVKM 86

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
            HP A+NRLIYVN+KLH LP++   L K   PF + L   I  DL      K DESIY F
Sbjct: 87  FHPAARNRLIYVNEKLHLLPNSLGGLLKIQEPFKRRLASIIWTDLRAPKEIKEDESIYSF 146

Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM---- 272
           V RR G +VADY +S MICGICAGDAK+ISVNFL+   FE EQ HG + KG +  +    
Sbjct: 147 VERRMGKDVADYLISPMICGICAGDAKQISVNFLLKSAFEFEQKHGSMTKGLLLNLLKKK 206

Query: 273 --MSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK--VEVKMDTTC 328
              S   + +   +S L  +S++EKWSVW + GGL+     L   L +K  + +K  T C
Sbjct: 207 SNQSTNKNKASSTKSHLVEKSKLEKWSVWGLRGGLEQFPIALSNSLKSKSNLSLKTKTNC 266

Query: 329 TNLEF 333
             + F
Sbjct: 267 EQITF 271

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	350
FB|FBgn0020018	475	Ppox "Protoporphyrinogen oxida	0.691	0.509	0.468	7e-54
UNIPROTKB|F1S197	477	PPOX "Uncharacterized protein"	0.671	0.492	0.423	1.4e-48
UNIPROTKB|E1BPX0	477	PPOX "Protoporphyrinogen oxida	0.622	0.457	0.439	7.7e-48
UNIPROTKB|J9NSM4	369	PPOX "Uncharacterized protein"	0.62	0.588	0.444	3.3e-47
UNIPROTKB|E2RG94	477	PPOX "Uncharacterized protein"	0.62	0.454	0.446	4.2e-47
MGI|MGI:104968	477	Ppox "protoporphyrinogen oxida	0.628	0.461	0.425	6.2e-46
RGD|1310543	477	Ppox "protoporphyrinogen oxida	0.631	0.463	0.427	1e-45
UNIPROTKB|P50336	477	PPOX "Protoporphyrinogen oxida	0.622	0.457	0.421	1.6e-45
UNIPROTKB|Q60HD5	477	PPOX "Protoporphyrinogen oxida	0.622	0.457	0.421	3.4e-45
ZFIN|ZDB-GENE-051120-90	477	ppox "protoporphyrinogen oxida	0.64	0.469	0.403	5e-44

FB|FBgn0020018 Ppox "Protoporphyrinogen oxidase" [Drosophila melanogaster (taxid:7227)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 119/254 (46%), Positives = 161/254 (63%)

Query:    96 PITLLESSSRLGGWVRSVQSPE-GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPI 154
             P+T+ E+S R+GGWVRS    +   IFE GPRTIRP G  GANTL+LVEDL L  +V PI
Sbjct:    26 PLTIYEASPRVGGWVRSENRKDRNFIFESGPRTIRPVGEPGANTLELVEDLKL--EVTPI 83

Query:   155 TSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTT--KTVPKSDES 212
               SH  A+NR++Y   +L  LP++   LF    PF+KPL  ++L DL T  K     DES
Sbjct:    84 RRSHVAARNRMLYAKGQLCMLPNSPKGLFGVLPPFTKPLYKAVLRDLFTASKKAKLEDES 143

Query:   213 IYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM 272
             IY F  RRFG E+ADYA+S MICGICAGDA++ISV FLM  LFE EQ +GGV+KG +   
Sbjct:   144 IYSFAERRFGKEIADYAISPMICGICAGDAREISVRFLMEGLFEKEQKYGGVLKGTLISR 203

Query:   273 MSK------RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK-VEVKMD 325
               K      +  L    + +LY ++  EKW+++ ++GGL+ +  T+ ++L  + V V++ 
Sbjct:   204 FEKNKTKDTKDGLFAERQPKLYAQAVKEKWAMYGLKGGLENLPKTMRKYLGERNVNVQLS 263

Query:   326 TTCTNLEFLEKGVK 339
               C NL F   GV+
Sbjct:   264 NECRNLTFSSSGVR 277

GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=ISS

GO:0005743 "mitochondrial inner membrane" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

UNIPROTKB|F1S197 PPOX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 507 (183.5 bits), Expect = 1.4e-48, P = 1.4e-48
 Identities = 103/243 (42%), Positives = 147/243 (60%)

Query:    97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
             + LLE S RLGGW+RS++ P+G +FE GPR IRP G LGA TL +V +LGL  +V+P+  
Sbjct:    30 VVLLEGSERLGGWIRSIRGPDGAVFELGPRGIRPAGALGARTLLMVSELGLDSEVLPVRG 89

Query:   157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
              HP ++NR +YV+  LH LPS F  LF    PFSKPL ++ L +LTT      DES++ F
Sbjct:    90 DHPASKNRFLYVDGALHPLPSGFRGLFCRSPPFSKPLFWAGLRELTTPRGKDPDESVHSF 149

Query:   217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM-MSK 275
               RR G EVA  A+ S+  G+ AG+++++S+      LF+ EQ H  V+ G +     S 
Sbjct:   150 AQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSVLLGLLMGAGRSP 209

Query:   276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK-VEVKMDTTCTNLEFL 334
             +PD      S L R++R E+WS WS+ GGL+T+   L  HL+++ V V      + L   
Sbjct:   210 QPD------SALIRQARAERWSQWSLRGGLETLPQALNAHLTSRGVSVLRGQPVSGLSLQ 263

Query:   335 EKG 337
              +G
Sbjct:   264 AEG 266

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|E1BPX0 PPOX "Protoporphyrinogen oxidase" [Bos taurus (taxid:9913)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 98/223 (43%), Positives = 139/223 (62%)

Query:    97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
             + L+E S RLGGW+RSV+ P+G IFE GPR IRP G LGA TL LV +LGL  +V+P+  
Sbjct:    30 VVLVEGSERLGGWIRSVRGPDGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRG 89

Query:   157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
              HP AQNR +YV   LH LPS    L +   PFSKPL ++ L DLTT      DE+++ F
Sbjct:    90 DHPAAQNRFLYVGGALHALPSGIRGLLRPSPPFSKPLFWAGLRDLTTPRGKDPDETVHSF 149

Query:   217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKR 276
               RR G EVA  A+ S+  G+ AG+++++S+      LF+ EQ H  ++ G +     + 
Sbjct:   150 AQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGA-GRG 208

Query:   277 PDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
             P L    +S L R+++ E+WS WS+ GGL+T+   L  HL+++
Sbjct:   209 PQL----DSALIRQAQAERWSQWSLRGGLETLPQALHAHLTSR 247

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|J9NSM4 PPOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 494 (179.0 bits), Expect = 3.3e-47, P = 3.3e-47
 Identities = 101/227 (44%), Positives = 139/227 (61%)

Query:    97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
             + L+E S RLGGW+RSV+ P G +FE GPR IRP G  GA TL LV +LGL  +V+P+  
Sbjct:    30 VVLVEGSERLGGWIRSVRGPGGAVFELGPRGIRPAGAPGARTLLLVSELGLDSEVLPVRG 89

Query:   157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
              HP AQNR +YV   LH LPS    LF+   PFSKPL ++ L +LTT      DE+++ F
Sbjct:    90 DHPAAQNRFLYVGGALHALPSGLRGLFRPSPPFSKPLFWAGLRELTTPRGKDPDETVHSF 149

Query:   217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHG----GVIKGAIKEM 272
               RR G EVA  A+ S+  G+ AG+++++SV      LF+ EQ H     G++ GA    
Sbjct:   150 AQRRLGPEVASLAMDSLCRGVFAGNSRELSVRSCFPSLFQAEQSHRSVLLGLLLGAASSG 209

Query:   273 MSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
              S RPD      S L R++R E+WS WS+ GGL+T+   L  +L+++
Sbjct:   210 HSPRPD------SALIRQARAERWSQWSLRGGLETLPQALNTYLTSR 250

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=IEA

UNIPROTKB|E2RG94 PPOX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 100/224 (44%), Positives = 138/224 (61%)

Query:    97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
             + L+E S RLGGW+RSV+ P G +FE GPR IRP G  GA TL LV +LGL  +V+P+  
Sbjct:    30 VVLVEGSERLGGWIRSVRGPGGAVFELGPRGIRPAGAPGARTLLLVSELGLDSEVLPVRG 89

Query:   157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
              HP AQNR +YV   LH LPS    LF+   PFSKPL ++ L +LTT      DE+++ F
Sbjct:    90 DHPAAQNRFLYVGGALHALPSGLRGLFRPSPPFSKPLFWAGLRELTTPRGKDPDETVHSF 149

Query:   217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM-MSK 275
               RR G EVA  A+ S+  G+ AG+++++SV      LF+ EQ H  V+ G +     S 
Sbjct:   150 AQRRLGPEVASLAMDSLCRGVFAGNSRELSVRSCFPSLFQAEQSHRSVLLGLLLGAGHSP 209

Query:   276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
             RPD      S L R++R E+WS WS+ GGL+T+   L  +L+++
Sbjct:   210 RPD------SALIRQARAERWSQWSLRGGLETLPQALNTYLTSR 247

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=IEA

GO:0006783 "heme biosynthetic process" evidence=IEA

GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:104968 Ppox "protoporphyrinogen oxidase" [Mus musculus (taxid:10090)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 97/228 (42%), Positives = 138/228 (60%)

Query:    94 STP-ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152
             S P + L+E S RLGGW+RS++  +G IFE GPR IRP G LGA TL LV +LGL  +V+
Sbjct:    26 SPPKVILVEGSKRLGGWIRSIRGSDGAIFELGPRGIRPAGALGARTLLLVSELGLESEVL 85

Query:   153 PITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDES 212
             P+   HP AQNR +YV   LH LPS    L +   PFSKPL ++ L +L      + DE+
Sbjct:    86 PVRGDHPAAQNRFLYVGGTLHPLPSGLRGLLRPSPPFSKPLFWAGLRELLKPRGKEPDET 145

Query:   213 IYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM 272
             ++ F  RR G EVA  A+ S+  G+ AG+++++S+      LF+ EQ H  ++ G +   
Sbjct:   146 VHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGA 205

Query:   273 -MSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
               S +PD      S L R++R E+WS WS+ GGL+ +   L  HL++K
Sbjct:   206 GQSPQPD------SSLIRQARAERWSQWSLRGGLEVLPQALHNHLASK 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=ISO

GO:0006783 "heme biosynthetic process" evidence=ISO;IDA

GO:0016020 "membrane" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=IDA

GO:0031305 "integral to mitochondrial inner membrane" evidence=ISO

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0046501 "protoporphyrinogen IX metabolic process" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO;IDA

RGD|1310543 Ppox "protoporphyrinogen oxidase" [Rattus norvegicus (taxid:10116)]

 Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
 Identities = 97/227 (42%), Positives = 138/227 (60%)

Query:    94 STP-ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI 152
             S P + L+E S RLGGW+RSV+  +G IFE GPR IRP G LGA TL LV +LGL  +V+
Sbjct:    26 SPPKVILVEGSKRLGGWIRSVRGSDGAIFELGPRGIRPAGALGARTLLLVSELGLESEVL 85

Query:   153 PITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDES 212
             P+   HP AQNR +YV   LH LPS    L +   PFSKPL ++ L +LT     + DE+
Sbjct:    86 PVRGDHPAAQNRFLYVGGALHPLPSGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDET 145

Query:   213 IYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM 272
             ++ F  RR G EVA  A+ S+  G+ AG+++++S+      LF+ EQ HG ++ G +   
Sbjct:   146 VHSFAQRRLGPEVASLAMDSLCRGVFAGNSQELSIRSCFPSLFQAEQTHGSMLLGLLLGA 205

Query:   273 MSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
               + P       S L R++R E+WS WS+ GGL+ +   L  +L++K
Sbjct:   206 -GQTPQ----PNSSLIRQARAERWSQWSLRGGLEMLPQALHNYLTSK 247

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=ISO;IDA

GO:0006783 "heme biosynthetic process" evidence=ISO;IDA

GO:0031305 "integral to mitochondrial inner membrane" evidence=IDA

GO:0031966 "mitochondrial membrane" evidence=ISO

GO:0042493 "response to drug" evidence=IEP

GO:0046501 "protoporphyrinogen IX metabolic process" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|P50336 PPOX "Protoporphyrinogen oxidase" [Homo sapiens (taxid:9606)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 94/223 (42%), Positives = 136/223 (60%)

Query:    97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
             + L+ESS RLGGW+RSV+ P G IFE GPR IRP G LGA TL LV +LGL  +V+P+  
Sbjct:    30 VVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRG 89

Query:   157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
              HP AQNR +YV   LH LP+    L +   PFSKPL ++ L +LT     + DE+++ F
Sbjct:    90 DHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETVHSF 149

Query:   217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKR 276
               RR G EVA  A+ S+  G+ AG+++++S+      LF+ EQ H  ++ G +     + 
Sbjct:   150 AQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGA-GRT 208

Query:   277 PDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
             P      +S L R++  E+WS WS+ GGL+ +   L  HL+++
Sbjct:   209 PQ----PDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSR 247

GO:0031305 "integral to mitochondrial inner membrane" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=IDA;TAS

GO:0031966 "mitochondrial membrane" evidence=IMP

GO:0006782 "protoporphyrinogen IX biosynthetic process" evidence=IEA

GO:0050660 "flavin adenine dinucleotide binding" evidence=TAS

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0006783 "heme biosynthetic process" evidence=IDA;TAS

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IDA

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=ISS

GO:0005758 "mitochondrial intermembrane space" evidence=TAS

GO:0006778 "porphyrin-containing compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

UNIPROTKB|Q60HD5 PPOX "Protoporphyrinogen oxidase" [Macaca fascicularis (taxid:9541)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 94/223 (42%), Positives = 135/223 (60%)

Query:    97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
             + L+E S RLGGW+RSV+ P G IFE GPR IRP G LGA TL LV +LGL  +V+P+  
Sbjct:    30 VVLVEGSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRG 89

Query:   157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
              HP AQNR +YV   LH LP+    L +   PFSKPL ++ L +LT     + DE+++ F
Sbjct:    90 DHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETVHSF 149

Query:   217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKR 276
               RR G EVA  A+ S+  G+ AG+++++S+      LF+ EQ H  V+ G +     + 
Sbjct:   150 AQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSVLLGLLLGA-GRT 208

Query:   277 PDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
             P      +S L R++  E+WS WS+ GGL+ +   L  HL+++
Sbjct:   209 PQ----PDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSR 247

GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=ISS

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=ISS

GO:0031304 "intrinsic to mitochondrial inner membrane" evidence=ISS

GO:0031966 "mitochondrial membrane" evidence=ISS

GO:0055114 "oxidation-reduction process" evidence=ISS

ZFIN|ZDB-GENE-051120-90 ppox "protoporphyrinogen oxidase" [Danio rerio (taxid:7955)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 92/228 (40%), Positives = 141/228 (61%)

Query:    97 ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
             I LLE S R GGW+ SV+  +G +FE+GPR +RP G +G NTL +V +LGL  +++PITS
Sbjct:    30 IVLLEGSGRCGGWLSSVRRDDGAVFEQGPRGVRPGGAVGRNTLNMVSELGLESELLPITS 89

Query:   157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
              H  +QNR +YV  +LHK+PS    + +T  PFS+P+I S+L +L      + DES++ F
Sbjct:    90 DHLASQNRFLYVKGQLHKMPSGLGGVLRTIPPFSRPIIQSVLKELVISKGTEEDESVHAF 149

Query:   217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKR 276
             VSRR GSE+AD A+  +  G+ AGD++++SV      L+E EQ  G ++ G +       
Sbjct:   150 VSRRLGSELADIAIDCLCRGVFAGDSRQLSVRSCFPPLYEAEQARGSIVLGMLMGS-GAG 208

Query:   277 PDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKM 324
             P +     S L +R+  E W+ WS++ G+QT+   L + L  +  V++
Sbjct:   209 PKVV---PSGLAKRASKESWTQWSLKRGMQTLPEALEDSLRRRNGVEL 253

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004729 "oxygen-dependent protoporphyrinogen oxidase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	350
COG1232	444	COG1232, HemY, Protoporphyrinogen oxidase [Coenzym	5e-34
PRK11883	451	PRK11883, PRK11883, protoporphyrinogen oxidase; Re	1e-29
PLN02576	496	PLN02576, PLN02576, protoporphyrinogen oxidase	3e-27
TIGR00562	462	TIGR00562, proto_IX_ox, protoporphyrinogen oxidase	1e-23
PRK12416	463	PRK12416, PRK12416, protoporphyrinogen oxidase; Pr	3e-10
pfam01593	444	pfam01593, Amino_oxidase, Flavin containing amine	1e-05

>gnl|CDD|224153 COG1232, HemY, Protoporphyrinogen oxidase [Coenzyme metabolism]

 Score =  129 bits (327), Expect = 5e-34
 Identities = 66/250 (26%), Positives = 114/250 (45%), Gaps = 28/250 (11%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           +TL E+  R+GG +R+V   +G +FE+GP     +       L L+++LGL D+++    
Sbjct: 28  VTLFEADDRVGGLLRTV-KIDGFLFERGPHHFLARKEE---ILDLIKELGLEDKLL---- 79

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTK--TVPKSDESIY 214
              +   + IY + KLH +P+            S+  +   L +        PK D S+ 
Sbjct: 80  -WNSTARKYIYYDGKLHPIPTPTILGIPLLLLSSEAGLARALQEFIRPKSWEPKQDISVG 138

Query: 215 DFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMS 274
           +F+ RRFG EV +  +  ++ GI AGDA K+S       L   E+ +G +++GA KE + 
Sbjct: 139 EFIRRRFGEEVVERFIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLP 198

Query: 275 KRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFL 334
           K+                        + GGLQ+++  L E L  + +++  T  T ++  
Sbjct: 199 KQSLKKEK----FG-----------YLRGGLQSLIEALAEKL--EAKIRTGTEVTKIDKK 241

Query: 335 EKGVKAVDQP 344
             G   VD  
Sbjct: 242 GAGKTIVDVG 251

Length = 444

>gnl|CDD|237009 PRK11883, PRK11883, protoporphyrinogen oxidase; Reviewed

 Score =  117 bits (296), Expect = 1e-29
 Identities = 73/263 (27%), Positives = 119/263 (45%), Gaps = 51/263 (19%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGA--NTLKLVEDLGLADQVIPI 154
           ITLLE+S RLGG +++V   +G   E GP     +  L    +   LV++LGL D+++  
Sbjct: 28  ITLLEASDRLGGKIQTV-RKDGFPIELGP-----ESFLARKPSAPALVKELGLEDELV-- 79

Query: 155 TSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFS-KPLIFSILHDLTTK--------- 204
            ++  T Q+  IYVN KLH +P    ++     P S  P +F+ L     K         
Sbjct: 80  ANT--TGQS-YIYVNGKLHPIPPG--TVMGI--PTSIAPFLFAGLVSPIGKLRAAADLRP 132

Query: 205 --TVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMA---KLFELEQ 259
               P  D+S+  F  RRFG EV +  +  ++ GI AGD   +S   L A   +L + E 
Sbjct: 133 PRWKPGQDQSVGAFFRRRFGDEVVENLIEPLLSGIYAGDIDTLS---LRATFPQLAQAED 189

Query: 260 LHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
            +G +++G  K +  ++    G                  +++GGLQ+++  L E L   
Sbjct: 190 KYGSLLRGMRKALPKEKKKTKGV---------------FGTLKGGLQSLIEALEEKLPAG 234

Query: 320 VEVKMDTTCTNLEFLEKGVKAVD 342
             +   T  T ++    G + V 
Sbjct: 235 -TIHKGTPVTKIDKSGDGYEIVL 256

Length = 451

>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase

 Score =  111 bits (280), Expect = 3e-27
 Identities = 68/247 (27%), Positives = 109/247 (44%), Gaps = 22/247 (8%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLAD-QVIPIT 155
           + + E+  R+GG + SV   +G I+E+GP + +P        L    D GL D  V P  
Sbjct: 39  VLVTEARDRVGGNITSVSE-DGFIWEEGPNSFQP----SDPELTSAVDSGLRDDLVFPDP 93

Query: 156 SSHPTAQNRLIYVNKKLHKLPSN-----FFSLFKTHSPFSKPLIFSILHDLTTKTVPKSD 210
            +      R +  N KL  LPSN      F L        +  + +          P  +
Sbjct: 94  QA-----PRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKI-RAGLGAFG--WKRPPPPGRE 145

Query: 211 ESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIK 270
           ES+ +FV R  G EV +  +   + G+ AGD   +S+     KL+ LE+  G +I GAIK
Sbjct: 146 ESVGEFVRRHLGDEVFERLIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIK 205

Query: 271 EMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTN 330
            +   + +          R  + +  +V S  GGLQT+ + L + L  K +VK++    +
Sbjct: 206 AIQEAKKNPKPEPRDP--RLPKPKGQTVGSFRGGLQTLPDALAKRLG-KDKVKLNWKVLS 262

Query: 331 LEFLEKG 337
           L   + G
Sbjct: 263 LSKNDDG 269

Length = 496

>gnl|CDD|213540 TIGR00562, proto_IX_ox, protoporphyrinogen oxidase

 Score =  101 bits (252), Expect = 1e-23
 Identities = 71/265 (26%), Positives = 122/265 (46%), Gaps = 41/265 (15%)

Query: 87  LCTVLRIST-------PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTL 139
           LC    +          +TL+E+S R+GG +++V+  +G + E+GP +   + +   +  
Sbjct: 15  LCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVKE-DGYLIERGPDSFLERKK---SAP 70

Query: 140 KLVEDLGLADQVIPITSSHPTAQNRLIYVNK-KLHKLPSNFFSLFKTHSPFSKPLIFSI- 197
            LV+DLGL      +  S  T Q R + VN+ KL  +P+         +PF K  +FS+ 
Sbjct: 71  DLVKDLGLE----HVLVSDATGQ-RYVLVNRGKLMPVPTKI-------APFVKTGLFSLG 118

Query: 198 -----LHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMA 252
                  D      P  DES+ +FV RRFG EV +  +  ++ GI AGD  K+S+     
Sbjct: 119 GKLRAGMDFIRPASPGKDESVEEFVRRRFGDEVVENLIEPLLSGIYAGDPSKLSLKSTFP 178

Query: 253 KLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTL 312
           K ++ EQ HG +I G     M K    +  + S L   ++ +     ++  GL+T+    
Sbjct: 179 KFYQTEQKHGSLILG-----MKKTR--NLPQGSGLQLTAKKQGQDFQTLATGLETLP--- 228

Query: 313 GEHLSNKVEVKMDTTCTNLEFLEKG 337
            E +  ++++      T +  L   
Sbjct: 229 -EEIEKRLKLTKVYKGTKVTKLSHR 252

This enzyme oxidizes protoporphyrinogen IX to protoporphyrin IX, a precursor of heme and chlorophyll. Bacillus subtilis HemY also has coproporphyrinogen III to coproporphyrin III oxidase activity in a heterologous expression system, although the role for this activity in vivo is unclear. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 462

>gnl|CDD|183516 PRK12416, PRK12416, protoporphyrinogen oxidase; Provisional

 Score = 61.0 bits (148), Expect = 3e-10
 Identities = 61/250 (24%), Positives = 110/250 (44%), Gaps = 35/250 (14%)

Query: 92  RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV 151
            I   + L+E    LGG + SV+  +  I E G  +I  +     + + LV+DL L +++
Sbjct: 28  NIDLNLILVEKEEYLGGKIHSVEEKD-FIMESGADSIVARNE---HVMPLVKDLNLEEEM 83

Query: 152 IPITSSHPTAQNRLIYVNKKLHKLPSNFF--------SLFKTHSPFSKPLIFSILHDLTT 203
           +     +       IY +  LH +PS+          SLF +    +K  I + L D  T
Sbjct: 84  V-----YNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGKIVA-LKDFIT 137

Query: 204 K-TVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHG 262
           K      D S+  F+    G E+ +  ++ ++ G+ +G   ++++   +  L + +  +G
Sbjct: 138 KNKEFTKDTSLALFLESFLGKELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYG 197

Query: 263 GVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEV 322
            +IK              G+EE++   +S   K  V S +GGL TI++ L E L+    V
Sbjct: 198 SIIK--------------GFEENKKQFQSAGNKKFV-SFKGGLSTIIDRLEEVLTE-TVV 241

Query: 323 KMDTTCTNLE 332
           K     T + 
Sbjct: 242 KKGAVTTAVS 251

Length = 463

>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase

 Score = 46.4 bits (110), Expect = 1e-05
 Identities = 41/253 (16%), Positives = 84/253 (33%), Gaps = 35/253 (13%)

Query: 96  PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
            +T+LE+  R+GG +R+V+  +G + E G +          N L L+ +LGL        
Sbjct: 16  DVTVLEARDRVGGRIRTVRF-DGFLIELGAQWFHGA---YPNLLNLLLELGLEL------ 65

Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYD 215
                         +  ++             P    L+          ++ + + S+ +
Sbjct: 66  -GLLLFPFPGDPFVRLKYRGGPYPD--LPGDLPPPLFLLLR--------SLLELELSLEE 114

Query: 216 FVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLH--GGVIKGAIKEMM 273
            + R     VA   ++  +  +          + L A  F    L     ++ GA+  + 
Sbjct: 115 PIRRALLLLVALLLLAPELLELDLLSFS----DLLSAAGFLELFLLLFRSLLAGALGFLP 170

Query: 274 SKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSN-----KVEVKMDTTC 328
               +LS        R   +E   V    GG    +  L + ++         V+++T  
Sbjct: 171 ---LELSARLALLSLRLFDLEDGGVVFPGGGFTLPLGGLPQLIAAALGLLGGRVRLNTRV 227

Query: 329 TNLEFLEKGVKAV 341
            ++     GV   
Sbjct: 228 RSITKSGDGVTVT 240

This family consists of various amine oxidases, including maze polyamine oxidase (PAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. The family also contains phytoene dehydrogenases and related enzymes. In vertebrates MAO plays an important role regulating the intracellular levels of amines via there oxidation; these include various neurotransmitters, neurotoxins and trace amines. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium. PAOs in plants, bacteria and protozoa oxidase spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins. Length = 444

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	350
KOG1276|consensus	491		100.0
COG1232	444	HemY Protoporphyrinogen oxidase [Coenzyme metaboli	99.98
PRK12416	463	protoporphyrinogen oxidase; Provisional	99.97
TIGR00562	462	proto_IX_ox protoporphyrinogen oxidase. This prote	99.97
PLN02576	496	protoporphyrinogen oxidase	99.96
PRK11883	451	protoporphyrinogen oxidase; Reviewed	99.95
PRK07208	479	hypothetical protein; Provisional	99.92
PRK07233	434	hypothetical protein; Provisional	99.91
PLN02612	567	phytoene desaturase	99.88
COG2907	447	Predicted NAD/FAD-binding protein [General functio	99.88
TIGR03467	419	HpnE squalene-associated FAD-dependent desaturase.	99.88
PLN02487	569	zeta-carotene desaturase	99.87
TIGR02731	453	phytoene_desat phytoene desaturase. Plants and cya	99.87
PLN02268	435	probable polyamine oxidase	99.86
TIGR02732	474	zeta_caro_desat carotene 7,8-desaturase. Carotene	99.86
PLN02568	539	polyamine oxidase	99.84
TIGR02734	502	crtI_fam phytoene desaturase. Phytoene is converte	99.77
PLN02328	808	lysine-specific histone demethylase 1 homolog	99.74
PLN02529	738	lysine-specific histone demethylase 1	99.74
TIGR02733	492	desat_CrtD C-3',4' desaturase CrtD. Members of thi	99.74
COG1233	487	Phytoene dehydrogenase and related proteins [Secon	99.7
KOG0685|consensus	498		99.69
PLN03000	881	amine oxidase	99.68
PLN02676	487	polyamine oxidase	99.66
PF01593	450	Amino_oxidase: Flavin containing amine oxidoreduct	99.65
COG1231	450	Monoamine oxidase [Amino acid transport and metabo	99.63
PTZ00363	443	rab-GDP dissociation inhibitor; Provisional	99.63
TIGR02730	493	carot_isom carotene isomerase. Members of this fam	99.61
KOG0029|consensus	501		99.59
COG3349	485	Uncharacterized conserved protein [Function unknow	99.55
PLN02976	1713	amine oxidase	99.5
TIGR00031	377	UDP-GALP_mutase UDP-galactopyranose mutase. The ge	99.5
PRK13977	576	myosin-cross-reactive antigen; Provisional	99.49
PF13450	68	NAD_binding_8: NAD(P)-binding Rossmann-like domain	99.24
COG0562	374	Glf UDP-galactopyranose mutase [Cell envelope biog	99.07
PF00996	438	GDI: GDP dissociation inhibitor; InterPro: IPR0182	98.63
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	98.51
PF06100	500	Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross	98.21
KOG4254|consensus	561		98.11
KOG1439|consensus	440		97.94
COG5044	434	MRS6 RAB proteins geranylgeranyltransferase compon	97.11
COG4716	587	Myosin-crossreactive antigen [Function unknown]	97.01
KOG0399|consensus	2142		96.36
PLN02172	461	flavin-containing monooxygenase FMO GS-OX	96.28
PRK12779	944	putative bifunctional glutamate synthase subunit b	96.1
PLN02852	491	ferredoxin-NADP+ reductase	95.95
KOG1399|consensus	448		95.89
PF07156	368	Prenylcys_lyase: Prenylcysteine lyase; InterPro: I	95.85
COG0493	457	GltD NADPH-dependent glutamate synthase beta chain	95.77
PF00743	531	FMO-like: Flavin-binding monooxygenase-like; Inter	95.66
TIGR03315	1012	Se_ygfK putative selenate reductase, YgfK subunit.	95.0
PTZ00188	506	adrenodoxin reductase; Provisional	95.0
PRK12831	464	putative oxidoreductase; Provisional	94.91
PRK09853	1019	putative selenate reductase subunit YgfK; Provisio	94.38
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	94.31
COG1635	262	THI4 Ribulose 1,5-bisphosphate synthetase, convert	94.27
PRK07364	415	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	94.16
PRK12769	654	putative oxidoreductase Fe-S binding subunit; Revi	94.11
PLN02661	357	Putative thiazole synthesis	94.04
PRK12809	639	putative oxidoreductase Fe-S binding subunit; Revi	94.0
COG2081	408	Predicted flavoproteins [General function predicti	93.99
TIGR01316	449	gltA glutamate synthase (NADPH), homotetrameric. T	93.82
PF01946	230	Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.	93.81
PRK12810	471	gltD glutamate synthase subunit beta; Reviewed	93.69
PRK12814	652	putative NADPH-dependent glutamate synthase small	93.64
PF00070	80	Pyr_redox: Pyridine nucleotide-disulphide oxidored	93.59
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	93.58
COG2072	443	TrkA Predicted flavoprotein involved in K+ transpo	93.38
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	93.15
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	92.94
PRK08132	547	FAD-dependent oxidoreductase; Provisional	92.92
PRK06567	1028	putative bifunctional glutamate synthase subunit b	92.83
PRK11749	457	dihydropyrimidine dehydrogenase subunit A; Provisi	92.82
COG1148	622	HdrA Heterodisulfide reductase, subunit A and rela	92.8
TIGR01318	467	gltD_gamma_fam glutamate synthase small subunit fa	92.79
TIGR03219	414	salicylate_mono salicylate 1-monooxygenase. Member	92.76
PRK08243	392	4-hydroxybenzoate 3-monooxygenase; Validated	92.68
TIGR00292	254	thiazole biosynthesis enzyme. This enzyme is invol	92.43
PRK04176	257	ribulose-1,5-biphosphate synthetase; Provisional	92.36
PRK06184	502	hypothetical protein; Provisional	91.96
PRK08163	396	salicylate hydroxylase; Provisional	91.89
PRK06115	466	dihydrolipoamide dehydrogenase; Reviewed	91.78
TIGR01292	300	TRX_reduct thioredoxin-disulfide reductase. This m	91.77
TIGR01988	385	Ubi-OHases Ubiquinone biosynthesis hydroxylase, Ub	91.7
KOG2415|consensus	621		91.58
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	91.48
PRK05249	461	soluble pyridine nucleotide transhydrogenase; Prov	91.42
TIGR01317	485	GOGAT_sm_gam glutamate synthases, NADH/NADPH, smal	91.38
PF12831	428	FAD_oxidored: FAD dependent oxidoreductase; PDB: 3	91.36
TIGR01813	439	flavo_cyto_c flavocytochrome c. This model describ	91.25
TIGR01424	446	gluta_reduc_2 glutathione-disulfide reductase, pla	91.0
TIGR01350	461	lipoamide_DH dihydrolipoamide dehydrogenase. The m	90.82
PF00890	417	FAD_binding_2: FAD binding domain of the Pfam fami	90.78
COG0644	396	FixC Dehydrogenases (flavoproteins) [Energy produc	90.72
PRK07121	492	hypothetical protein; Validated	90.58
PLN02985	514	squalene monooxygenase	90.56
COG0579	429	Predicted dehydrogenase [General function predicti	90.48
TIGR01372	985	soxA sarcosine oxidase, alpha subunit family, hete	90.3
PRK06481	506	fumarate reductase flavoprotein subunit; Validated	90.13
PRK12770	352	putative glutamate synthase subunit beta; Provisio	90.13
TIGR00275	400	flavoprotein, HI0933 family. The model when search	90.02
PRK06753	373	hypothetical protein; Provisional	89.99
TIGR02360	390	pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase.	89.93
PRK05868	372	hypothetical protein; Validated	89.9
PRK12771	564	putative glutamate synthase (NADPH) small subunit;	89.78
PRK08849	384	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	89.77
COG3380	331	Predicted NAD/FAD-dependent oxidoreductase [Genera	89.75
PRK08013	400	oxidoreductase; Provisional	89.75
PRK07251	438	pyridine nucleotide-disulfide oxidoreductase; Prov	89.6
PRK12834	549	putative FAD-binding dehydrogenase; Reviewed	89.2
PRK13984	604	putative oxidoreductase; Provisional	89.2
PRK12409	410	D-amino acid dehydrogenase small subunit; Provisio	89.15
PRK08850	405	2-octaprenyl-6-methoxyphenol hydroxylase; Validate	88.94
PRK10262	321	thioredoxin reductase; Provisional	88.91
TIGR03143	555	AhpF_homolog putative alkyl hydroperoxide reductas	88.74
PRK08274	466	tricarballylate dehydrogenase; Validated	88.74
PF01266	358	DAO: FAD dependent oxidoreductase; InterPro: IPR00	88.63
PF01494	356	FAD_binding_3: FAD binding domain; InterPro: IPR00	88.63
PRK06416	462	dihydrolipoamide dehydrogenase; Reviewed	88.58
TIGR01421	450	gluta_reduc_1 glutathione-disulfide reductase, ani	88.19
PRK12845	564	3-ketosteroid-delta-1-dehydrogenase; Reviewed	88.09
PRK06834	488	hypothetical protein; Provisional	88.05
PRK07236	386	hypothetical protein; Provisional	87.96
PRK12842	574	putative succinate dehydrogenase; Reviewed	87.94
PRK08244	493	hypothetical protein; Provisional	87.94
PRK06183	538	mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Va	87.81
PRK06467	471	dihydrolipoamide dehydrogenase; Reviewed	87.79
TIGR03197	381	MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouri	87.75
PRK12839	572	hypothetical protein; Provisional	87.67
PRK10157	428	putative oxidoreductase FixC; Provisional	87.51
PRK07818	466	dihydrolipoamide dehydrogenase; Reviewed	87.46
PRK06475	400	salicylate hydroxylase; Provisional	87.39
PRK07588	391	hypothetical protein; Provisional	87.31
PRK07538	413	hypothetical protein; Provisional	87.24
KOG2614|consensus	420		87.24
PRK06116	450	glutathione reductase; Validated	87.16
PRK06847	375	hypothetical protein; Provisional	86.84
PRK05976	472	dihydrolipoamide dehydrogenase; Validated	86.8
PRK06126	545	hypothetical protein; Provisional	86.78
PRK09126	392	hypothetical protein; Provisional	86.72
PRK07045	388	putative monooxygenase; Reviewed	86.38
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	86.29
PRK12835	584	3-ketosteroid-delta-1-dehydrogenase; Reviewed	86.17
PRK08010	441	pyridine nucleotide-disulfide oxidoreductase; Prov	86.08
PRK14727	479	putative mercuric reductase; Provisional	86.06
TIGR02032	295	GG-red-SF geranylgeranyl reductase family. This mo	85.92
COG2081	408	Predicted flavoproteins [General function predicti	85.83
PRK06292	460	dihydrolipoamide dehydrogenase; Validated	85.79
PRK06175	433	L-aspartate oxidase; Provisional	85.62
TIGR01790	388	carotene-cycl lycopene cyclase family protein. Thi	85.53
PRK12837	513	3-ketosteroid-delta-1-dehydrogenase; Provisional	85.36
PRK10015	429	oxidoreductase; Provisional	84.83
PRK07803	626	sdhA succinate dehydrogenase flavoprotein subunit;	84.79
PF13738	203	Pyr_redox_3: Pyridine nucleotide-disulphide oxidor	84.59
PRK12844	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	84.56
PRK06370	463	mercuric reductase; Validated	84.46
PRK00711	416	D-amino acid dehydrogenase small subunit; Validate	84.31
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	84.31
PRK07395	553	L-aspartate oxidase; Provisional	84.21
PF03486	409	HI0933_like: HI0933-like protein; InterPro: IPR004	84.2
PRK06617	374	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	84.16
PRK08641	589	sdhA succinate dehydrogenase flavoprotein subunit;	84.09
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	83.9
PRK07608	388	ubiquinone biosynthesis hydroxylase family protein	83.9
PRK11728	393	hydroxyglutarate oxidase; Provisional	83.84
TIGR02053	463	MerA mercuric reductase. This model represents the	83.75
TIGR02028	398	ChlP geranylgeranyl reductase. This model represen	83.7
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	83.45
PTZ00367	567	squalene epoxidase; Provisional	83.39
PRK07494	388	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	83.37
PRK07588	391	hypothetical protein; Provisional	82.88
TIGR01377	380	soxA_mon sarcosine oxidase, monomeric form. Sarcos	82.73
PRK06912	458	acoL dihydrolipoamide dehydrogenase; Validated	82.69
PRK11259	376	solA N-methyltryptophan oxidase; Provisional	82.6
PRK07843	557	3-ketosteroid-delta-1-dehydrogenase; Reviewed	82.14
PRK13748	561	putative mercuric reductase; Provisional	82.11
TIGR01984	382	UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. T	82.09
TIGR03140	515	AhpF alkyl hydroperoxide reductase, F subunit. Thi	82.06
PLN02927	668	antheraxanthin epoxidase/zeaxanthin epoxidase	81.89
PRK14694	468	putative mercuric reductase; Provisional	81.53
PRK06134	581	putative FAD-binding dehydrogenase; Reviewed	81.4
PRK01747	662	mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans	81.31
PRK08294	634	phenol 2-monooxygenase; Provisional	81.06
PRK08773	392	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	81.0
PRK07236	386	hypothetical protein; Provisional	80.96
PRK07333	403	2-octaprenyl-6-methoxyphenyl hydroxylase; Provisio	80.94
PRK07804	541	L-aspartate oxidase; Provisional	80.88
PLN00093	450	geranylgeranyl diphosphate reductase; Provisional	80.85
PRK05732	395	2-octaprenyl-6-methoxyphenyl hydroxylase; Validate	80.66
TIGR01812	566	sdhA_frdA_Gneg succinate dehydrogenase or fumarate	80.65
COG0665	387	DadA Glycine/D-amino acid oxidases (deaminating) [	80.56
PRK06327	475	dihydrolipoamide dehydrogenase; Validated	80.55
PRK05714	405	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hy	80.49
PRK11728	393	hydroxyglutarate oxidase; Provisional	80.46
PRK06452	566	sdhA succinate dehydrogenase flavoprotein subunit;	80.43
PTZ00052	499	thioredoxin reductase; Provisional	80.34
TIGR03364	365	HpnW_proposed FAD dependent oxidoreductase TIGR033	80.17
TIGR02485	432	CobZ_N-term precorrin 3B synthase CobZ. CobZ is es	80.11

>KOG1276|consensus

Probab=100.00  E-value=4.1e-33  Score=262.43  Aligned_cols=258  Identities=40%  Similarity=0.685  Sum_probs=214.3

Q ss_pred             hhhHhHhhh---cCCCC--EEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666          83 VIRILCTVL---RISTP--ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS  157 (350)
Q Consensus        83 viaGLaaA~---~~G~~--VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~  157 (350)
                      +|+||+||+   +++.+  |+|+||.+|+||+++|.+-.+|+.||.||..+.|..+++.++++++.+||+++++.+++.+
T Consensus        20 GiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r~~ng~ifE~GPrtlrpag~~g~~~l~lv~dLGl~~e~~~i~~~   99 (491)
T KOG1276|consen   20 GISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDRMQNGFIFEEGPRTLRPAGPGGAETLDLVSDLGLEDELQPIDIS   99 (491)
T ss_pred             chhHHHHHHHHHhcCCCceEEEEecCCcccceeeeccCCCceeeccCCCccCcCCcchhHHHHHHHHcCccceeeecCCC
Confidence            359999998   45544  5669999999999999554689999999999998776677899999999999999998888


Q ss_pred             CCCCcceEEEeCCeEEECCCChhhh-cccCCCCCHHHHHHHHHHhhcC--CCCCCCCcHHHHHHHhhChHHHHHHHHHhh
Q psy7666         158 HPTAQNRLIYVNKKLHKLPSNFFSL-FKTHSPFSKPLIFSILHDLTTK--TVPKSDESIYDFVSRRFGSEVADYAVSSMI  234 (350)
Q Consensus       158 ~p~~~~~~i~~~g~~~~~p~~~~~~-~~~~~~l~~~~~~~~l~~~~~~--~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~  234 (350)
                      +|...++++|++|+++.+|+++.+. ..-++++..+.++.++++.+++  .....|+||.+|++|+||+++.+++++|++
T Consensus       100 ~paaknr~l~~~~~L~~vP~sl~~s~~~~l~p~~k~L~~a~l~e~fr~~~~~~~~dESV~sF~~RrfG~eV~d~~isp~i  179 (491)
T KOG1276|consen  100 HPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQPFGKPLLEAFLRELFRKKVSDPSADESVESFARRRFGKEVADRLISPFI  179 (491)
T ss_pred             ChhhhheeeccCcccccCCcccccccccccCcccchhHHHHHhhhccccCCCCCccccHHHHHHHhhhHHHHHHHHHHHh
Confidence            8988899999999999999987763 3333567777888999999876  455679999999999999999999999999


Q ss_pred             hhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHH
Q psy7666         235 CGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGE  314 (350)
Q Consensus       235 ~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~  314 (350)
                      +|+|++|+.++|+++.|+.+|+.|++||+++.|++..+|.....+.  .+......+..+.+.++.++||++++++++.+
T Consensus       180 ~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~--~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~  257 (491)
T KOG1276|consen  180 RGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKK--AETALSAQAKKEKWTMFSLKGGLETLPKALRK  257 (491)
T ss_pred             CccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCC--ccchhhhhhcccccchhhhhhhHhHhHHHHHH
Confidence            9999999999999999999999999999999999987764322211  11111112245677889999999999999999


Q ss_pred             hhc-CCCEEEeCcceeEEEEeCCe-EEEEe
Q psy7666         315 HLS-NKVEVKMDTTCTNLEFLEKG-VKAVD  342 (350)
Q Consensus       315 ~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~  342 (350)
                      .|. ..+.|.++-++..+.....+ |.+++
T Consensus       258 ~L~~~~v~i~~~~~~~~~sk~~~~~~~~tl  287 (491)
T KOG1276|consen  258 SLGEREVSISLGLKLSGNSKSRSGNWSLTL  287 (491)
T ss_pred             HhcccchhhhcccccccccccccCCceeEe
Confidence            998 67889999999999876543 66554

>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]

Probab=99.98  E-value=1.4e-31  Score=260.94  Aligned_cols=241  Identities=29%  Similarity=0.482  Sum_probs=196.1

Q ss_pred             ehhhHhHhhh---cCC--CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCC
Q psy7666          82 LVIRILCTVL---RIS--TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS  156 (350)
Q Consensus        82 ~viaGLaaA~---~~G--~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~  156 (350)
                      ++||||+||+   +++  ++|+|||+.+|+||.++|+. .+|+.||.|+|.|....+   .++++++|||+++.+.+   
T Consensus         8 ~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~G~~~e~G~~~f~~~~~---~~l~li~eLGled~l~~---   80 (444)
T COG1232           8 GGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-IDGFLFERGPHHFLARKE---EILDLIKELGLEDKLLW---   80 (444)
T ss_pred             CcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eCCEEEeechhheecchH---HHHHHHHHhCcHHhhcc---
Confidence            4569999998   567  99999999999999999999 699999999999976644   89999999999998875   


Q ss_pred             CCCCCcceEEEeCCeEEECCCCh-hhhcccCCCCCHHHHHHHHHHhhcC--CCCCCCCcHHHHHHHhhChHHHHHHHHHh
Q psy7666         157 SHPTAQNRLIYVNKKLHKLPSNF-FSLFKTHSPFSKPLIFSILHDLTTK--TVPKSDESIYDFVSRRFGSEVADYAVSSM  233 (350)
Q Consensus       157 ~~p~~~~~~i~~~g~~~~~p~~~-~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl  233 (350)
                        +.....|+|.+|+++++|.+. ..+.....+ +...+.+++.++..+  +...++.|+++|++++||++++++++.|+
T Consensus        81 --~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~sv~~f~r~~fG~ev~~~~~~pl  157 (444)
T COG1232          81 --NSTARKYIYYDGKLHPIPTPTILGIPLLLLS-SEAGLARALQEFIRPKSWEPKQDISVGEFIRRRFGEEVVERFIEPL  157 (444)
T ss_pred             --CCcccceEeeCCcEEECCccceeecCCcccc-chhHHHHHHHhhhcccCCCCCCCcCHHHHHHHHHhHHHHHHHHHHH
Confidence              333456999999999999863 222221111 123455666776654  46678999999999999999999999999


Q ss_pred             hhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHH
Q psy7666         234 ICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLG  313 (350)
Q Consensus       234 ~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa  313 (350)
                      ++++|+++++++|+.+.++.+...+..+++++.|+.+....+.               ......+.+++||+++|+++|+
T Consensus       158 l~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~---------------~~~~~~~~~~~gG~~~l~~al~  222 (444)
T COG1232         158 LEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQ---------------SLKKEKFGYLRGGLQSLIEALA  222 (444)
T ss_pred             hhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCccc---------------ccccccccccCccHHHHHHHHH
Confidence            9999999999999998899999999999999888875421100               0112347889999999999999


Q ss_pred             HhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         314 EHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       314 ~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +.++  .+|+++++|++|.++..++.+.+.+|..+|
T Consensus       223 ~~l~--~~i~~~~~V~~i~~~~~~~~~~~~~g~~~~  256 (444)
T COG1232         223 EKLE--AKIRTGTEVTKIDKKGAGKTIVDVGGEKIT  256 (444)
T ss_pred             HHhh--hceeecceeeEEEEcCCccEEEEcCCceEE
Confidence            9998  569999999999999888888888888765

>PRK12416 protoporphyrinogen oxidase; Provisional

Probab=99.97  E-value=1.5e-29  Score=252.30  Aligned_cols=242  Identities=24%  Similarity=0.353  Sum_probs=187.7

Q ss_pred             ehhhHhHhhh---cC------CCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RI------STPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~------G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      |+||||+||+   ++      |++|+||||++|+|||++|.+ .+|+.+|+|+||+++.++   ++++|+++||+++.+.
T Consensus         9 aGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~g~~~e~G~~~i~~~~~---~~~~l~~~lgl~~~~~   84 (463)
T PRK12416          9 GGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EKDFIMESGADSIVARNE---HVMPLVKDLNLEEEMV   84 (463)
T ss_pred             CCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eCCEEEecCcHHHhcCCH---HHHHHHHHcCCcccee
Confidence            4559999997   33      389999999999999999999 589999999999988776   8999999999987655


Q ss_pred             ccCCCCCCCcceEEEeCCeEEECCCCh--------hhhcccCCCCCHHHHHHHHHHhhcCC-CCCCCCcHHHHHHHhhCh
Q psy7666         153 PITSSHPTAQNRLIYVNKKLHKLPSNF--------FSLFKTHSPFSKPLIFSILHDLTTKT-VPKSDESIYDFVSRRFGS  223 (350)
Q Consensus       153 ~~~~~~p~~~~~~i~~~g~~~~~p~~~--------~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~Sv~~~l~~~~~~  223 (350)
                      .     +.....+++.+|+.+++|.+.        ..++.. ..+++..+.+.+.+.+.+. ...+++|+.+|++++++.
T Consensus        85 ~-----~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~~~  158 (463)
T PRK12416         85 Y-----NETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSS-TLVSTKGKIVALKDFITKNKEFTKDTSLALFLESFLGK  158 (463)
T ss_pred             c-----CCCCceEEEECCeEEECCCCCeecCCCChHHhhcC-CcCCHHHHHHhhhhhccCCCCCCCCCCHHHHHHHhcCH
Confidence            4     222457888888887776541        112221 2344445556666655432 234789999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecC
Q psy7666         224 EVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEG  303 (350)
Q Consensus       224 ~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~G  303 (350)
                      ++.+.++.|++.++|+.+++++|+.++++.+...+..+++++.++.... ....              ......+++++|
T Consensus       159 ~~~~~~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~-~~~~--------------~~~~~~~~~~~g  223 (463)
T PRK12416        159 ELVERQIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENK-KQFQ--------------SAGNKKFVSFKG  223 (463)
T ss_pred             HHHHHHHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhh-hccC--------------CCCCCceEeeCC
Confidence            9999999999999999999999999988988888888888887764211 0000              011234788999


Q ss_pred             cHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         304 GLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       304 G~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ||++|+++|++.|. +++|++|++|++|++++++|.|++.+|++++
T Consensus       224 G~~~l~~~l~~~l~-~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~  268 (463)
T PRK12416        224 GLSTIIDRLEEVLT-ETVVKKGAVTTAVSKQGDRYEISFANHESIQ  268 (463)
T ss_pred             CHHHHHHHHHHhcc-cccEEcCCEEEEEEEcCCEEEEEECCCCEEE
Confidence            99999999999996 3589999999999999999999988887654

>TIGR00562 proto_IX_ox protoporphyrinogen oxidase

Probab=99.97  E-value=2.5e-29  Score=250.28  Aligned_cols=250  Identities=28%  Similarity=0.424  Sum_probs=187.2

Q ss_pred             ehhhHhHhhh---cC----CCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccccc
Q psy7666          82 LVIRILCTVL---RI----STPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPI  154 (350)
Q Consensus        82 ~viaGLaaA~---~~----G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~  154 (350)
                      ++||||+||+   ++    |++|+||||++|+|||++|.+ .+|+.+|.|+|||++.++   +++++++++|+.+.... 
T Consensus        10 aGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~g~~~e~G~~~~~~~~~---~~~~l~~~lgl~~~~~~-   84 (462)
T TIGR00562        10 GGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-EDGYLIERGPDSFLERKK---SAPDLVKDLGLEHVLVS-   84 (462)
T ss_pred             CCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eCCEEEecCccccccCCh---HHHHHHHHcCCCccccc-
Confidence            3459999997   45    999999999999999999999 589999999999998886   79999999999765432 


Q ss_pred             CCCCCCCcceEEEeC-CeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHHHHHHh
Q psy7666         155 TSSHPTAQNRLIYVN-KKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSM  233 (350)
Q Consensus       155 ~~~~p~~~~~~i~~~-g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl  233 (350)
                          +.....+++.+ |+.+++|..+..++.. ..+......+...+.+.+.....++|+.+|+++++++.+.+.++.|+
T Consensus        85 ----~~~~~~~~~~~~g~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~s~~e~l~~~~g~~~~~~~~~p~  159 (462)
T TIGR00562        85 ----DATGQRYVLVNRGKLMPVPTKIAPFVKT-GLFSLGGKLRAGMDFIRPASPGKDESVEEFVRRRFGDEVVENLIEPL  159 (462)
T ss_pred             ----CCCCceEEEECCCceecCCCChHHHhcC-CCCCchhhHHhhhhhccCCCCCCCcCHHHHHHHhcCHHHHHHHHHHH
Confidence                12245677776 8888888766555443 22332233333323333222345699999999999999999999999


Q ss_pred             hhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHH
Q psy7666         234 ICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLG  313 (350)
Q Consensus       234 ~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa  313 (350)
                      +.++|+.+++++|+.++++.++..+..+++++.++....  ..+..   .....|.  ...+..+.++.||+++|+++|+
T Consensus       160 ~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~--~~~~~---~~~~~~~--~~~~~~~~~~~gG~~~l~~~l~  232 (462)
T TIGR00562       160 LSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTR--NLPQG---SGLQLTA--KKQGQDFQTLATGLETLPEEIE  232 (462)
T ss_pred             hcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhc--ccCcc---ccccccc--cccCCceEecchhHHHHHHHHH
Confidence            999999999999999999999887777888776663210  00000   0000010  1112236889999999999999


Q ss_pred             HhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         314 EHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       314 ~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +.|. +++|++|++|++|.+++++|.|++.+|++++
T Consensus       233 ~~l~-~~~i~~~~~V~~I~~~~~~~~v~~~~g~~~~  267 (462)
T TIGR00562       233 KRLK-LTKVYKGTKVTKLSHRGSNYTLELDNGVTVE  267 (462)
T ss_pred             HHhc-cCeEEcCCeEEEEEecCCcEEEEECCCcEEE
Confidence            9995 3689999999999999889999988887654

This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.

>PLN02576 protoporphyrinogen oxidase

Probab=99.96  E-value=5e-28  Score=243.25  Aligned_cols=248  Identities=27%  Similarity=0.408  Sum_probs=185.5

Q ss_pred             ehhhHhHhhh---cC-CCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666          82 LVIRILCTVL---RI-STPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS  157 (350)
Q Consensus        82 ~viaGLaaA~---~~-G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~  157 (350)
                      +++|||+||+   ++ |++|+||||++|+|||++|.+ .+|+.+|.|+|+|++.++   .+.+++++ |+.+.++...  
T Consensus        20 aGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~g~~~d~G~~~~~~~~~---~~~~l~~~-gl~~~~~~~~--   92 (496)
T PLN02576         20 AGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-EDGFIWEEGPNSFQPSDP---ELTSAVDS-GLRDDLVFPD--   92 (496)
T ss_pred             cCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cCCeEEecCCchhccCcH---HHHHHHHc-CChhheecCC--
Confidence            3459999997   56 999999999999999999999 599999999999988776   77888877 9877655421  


Q ss_pred             CCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhc---CCCCCCCCcHHHHHHHhhChHHHHHHHHHhh
Q psy7666         158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTT---KTVPKSDESIYDFVSRRFGSEVADYAVSSMI  234 (350)
Q Consensus       158 ~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~---~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~  234 (350)
                       + ....+++.+|+.+++|.++..++.. ..++..++.+++...+.   .....+++|+++|+++++++.+++.+++|++
T Consensus        93 -~-~~~~~~~~~g~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~sv~~~l~~~~g~~~~~~~~~p~~  169 (496)
T PLN02576         93 -P-QAPRYVVWNGKLRPLPSNPIDLPTF-DLLSAPGKIRAGLGAFGWKRPPPPGREESVGEFVRRHLGDEVFERLIDPFV  169 (496)
T ss_pred             -C-CceEEEEECCEEEEcCCChHHhcCc-CcCChhHHHHHhHHHhhccCCCCCCCCCcHHHHHHHhcCHHHHHHHHHHHh
Confidence             2 2346788899999998876555433 34555555555444332   1223578999999999999999999999999


Q ss_pred             hhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCC-cchhHHHHhhhcccceEEEecCcHHHHHHHHH
Q psy7666         235 CGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSG-YEESELYRRSRIEKWSVWSVEGGLQTIVNTLG  313 (350)
Q Consensus       235 ~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~-~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa  313 (350)
                      .++|+.+++++|+.++++.++..++.+|+++.+++...+.....+.. ..+.. .  ....+...++++|||++|+++|+
T Consensus       170 ~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~gG~~~L~~~la  246 (496)
T PLN02576        170 SGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPR-L--PKPKGQTVGSFRGGLQTLPDALA  246 (496)
T ss_pred             CceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccc-c--ccccCCeeEeccchHHHHHHHHH
Confidence            99999999999999999999999989999888876433110000000 00000 0  00123346889999999999999


Q ss_pred             HhhcCCCEEEeCcceeEEEEeCCe-EEEEeC
Q psy7666         314 EHLSNKVEVKMDTTCTNLEFLEKG-VKAVDQ  343 (350)
Q Consensus       314 ~~L~~g~~I~l~~~V~~I~~~~~g-v~V~~~  343 (350)
                      +.++ .++|++|++|++|++.+++ |.|++.
T Consensus       247 ~~l~-~~~i~l~~~V~~I~~~~~~~~~v~~~  276 (496)
T PLN02576        247 KRLG-KDKVKLNWKVLSLSKNDDGGYSLTYD  276 (496)
T ss_pred             HhhC-cCcEEcCCEEEEEEECCCCcEEEEEe
Confidence            9984 2589999999999998876 666544

>PRK11883 protoporphyrinogen oxidase; Reviewed

Probab=99.95  E-value=1e-26  Score=230.51  Aligned_cols=243  Identities=28%  Similarity=0.431  Sum_probs=178.8

Q ss_pred             ehhhHhHhhh---cCC--CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCC
Q psy7666          82 LVIRILCTVL---RIS--TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS  156 (350)
Q Consensus        82 ~viaGLaaA~---~~G--~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~  156 (350)
                      ++||||+||+   ++|  ++|+||||++|+|||++|.+ .+|+.+|+|+|++++.++   +++++++++|+++.....  
T Consensus         8 aGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~---~~~~l~~~lgl~~~~~~~--   81 (451)
T PRK11883          8 GGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KDGFPIELGPESFLARKP---SAPALVKELGLEDELVAN--   81 (451)
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eCCeEEecChHHhcCCcH---HHHHHHHHcCCccceecC--
Confidence            4459999997   556  99999999999999999999 589999999999987776   799999999997654431  


Q ss_pred             CCCCCcceEEEeCCeEEECCCCh-hhhccc------CCCCCHHHHHHHHHHhhcC-CCCCCCCcHHHHHHHhhChHHHHH
Q psy7666         157 SHPTAQNRLIYVNKKLHKLPSNF-FSLFKT------HSPFSKPLIFSILHDLTTK-TVPKSDESIYDFVSRRFGSEVADY  228 (350)
Q Consensus       157 ~~p~~~~~~i~~~g~~~~~p~~~-~~~~~~------~~~l~~~~~~~~l~~~~~~-~~~~~~~Sv~~~l~~~~~~~~~~~  228 (350)
                         .....+++.+|+.+.+|... .++...      ...+...+..+...+.... ....+++|+.+|+++.++..+.+.
T Consensus        82 ---~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~~~~~~~~  158 (451)
T PRK11883         82 ---TTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLRAAADLRPPRWKPGQDQSVGAFFRRRFGDEVVEN  158 (451)
T ss_pred             ---CCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHHhhCcccCCCCCCCCCcCHHHHHHHhccHHHHHH
Confidence               12345778899988877531 111100      0122222223322222111 123578999999999999999999


Q ss_pred             HHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHH
Q psy7666         229 AVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTI  308 (350)
Q Consensus       229 ~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L  308 (350)
                      ++.|++.++|+.+++++|+..+++.+...+..+++++.++.... ....              ......+++++||+++|
T Consensus       159 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~~~G~~~l  223 (451)
T PRK11883        159 LIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKAL-PKEK--------------KKTKGVFGTLKGGLQSL  223 (451)
T ss_pred             HHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhc-cccC--------------CCCCCceEeeccHHHHH
Confidence            99999999999999999999888877666666676655554321 0000              01123467899999999


Q ss_pred             HHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         309 VNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       309 ~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +++|++.++. .+|++|++|++|+.++++|.|++.+|++++
T Consensus       224 ~~~l~~~l~~-~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~  263 (451)
T PRK11883        224 IEALEEKLPA-GTIHKGTPVTKIDKSGDGYEIVLSNGGEIE  263 (451)
T ss_pred             HHHHHHhCcC-CeEEeCCEEEEEEEcCCeEEEEECCCCEEE
Confidence            9999999961 189999999999999889999998887664

>PRK07208 hypothetical protein; Provisional

Probab=99.92  E-value=4.4e-24  Score=213.78  Aligned_cols=232  Identities=18%  Similarity=0.171  Sum_probs=164.3

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      |++|||+||+   ++|++|+|+|+++++||+++|.. .+|+.+|.|+|++++.++   .+++|++++++...+..     
T Consensus        12 aGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~g~~~d~G~h~~~~~~~---~~~~l~~~l~~~~~~~~-----   82 (479)
T PRK07208         12 AGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YKGNRFDIGGHRFFSKSP---EVMDLWNEILPDDDFLL-----   82 (479)
T ss_pred             cCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cCCceEccCCceeccCCH---HHHHHHHHhcCCCcccc-----
Confidence            4459999998   57999999999999999999999 589999999999988776   99999999987444432     


Q ss_pred             CCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcC--CCCCCCCcHHHHHHHhhChHHHHHHHHHhhhh
Q psy7666         159 PTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTK--TVPKSDESIYDFVSRRFGSEVADYAVSSMICG  236 (350)
Q Consensus       159 p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~  236 (350)
                       .....+++.+|+.+.+|....+.+.   .+....+.+.+.+.+..  ....+++|+.+|+++++|+.+.+.++.|++.+
T Consensus        83 -~~~~~~~~~~g~~~~~p~~~~~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~e~l~~~~g~~~~~~~~~p~~~~  158 (479)
T PRK07208         83 -RPRLSRIYYRGKFFDYPLKAFDALK---NLGLWRTAKCGASYLKARLRPRKEEDSFEDWVINRFGRRLYSTFFKGYTEK  158 (479)
T ss_pred             -ccccceEEECCEEecCCcchhHHHH---hCCHhHHHHHHHHHHHHhcCCCCCCCCHHHHHHHhhCHHHHHHHHHHhhhh
Confidence             1134677889998888865433332   23333334444343321  12246799999999999999999999999999


Q ss_pred             cccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcC-CCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHh
Q psy7666         237 ICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKR-PDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEH  315 (350)
Q Consensus       237 ~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~-~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~  315 (350)
                      +|+.+++++|+.++++.+.     ..++ ...+...+... ..+.......     ......+.+++||+++|+++|++.
T Consensus       159 ~~~~~~~~~s~~~~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~gG~~~l~~~L~~~  227 (479)
T PRK07208        159 VWGVPCDEISADWAAQRIK-----GLSL-GKAIRNALRRSLGLKRRNKEVE-----TSLIEEFRYPKLGPGQLWETAAEK  227 (479)
T ss_pred             hhCCChHHCCChHHhCccc-----CCCH-HHHHHHHhhhcccccccCCCcc-----ccceeEEeCCCCCcchHHHHHHHH
Confidence            9999999999988765431     1122 11221111100 0000000000     000124677899999999999999


Q ss_pred             hc-CCCEEEeCcceeEEEEeCCe
Q psy7666         316 LS-NKVEVKMDTTCTNLEFLEKG  337 (350)
Q Consensus       316 L~-~g~~I~l~~~V~~I~~~~~g  337 (350)
                      +. .|++|++|++|++|..++++
T Consensus       228 l~~~g~~i~~~~~V~~I~~~~~~  250 (479)
T PRK07208        228 LEALGGKVVLNAKVVGLHHDGDG  250 (479)
T ss_pred             HHHcCCEEEeCCEEEEEEEcCCc
Confidence            98 78999999999999998776

>PRK07233 hypothetical protein; Provisional

Probab=99.91  E-value=3.4e-23  Score=204.05  Aligned_cols=227  Identities=20%  Similarity=0.220  Sum_probs=164.3

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      ++||||+||+   ++|++|+|||+++++|||++|++ .+|+.+|.|+|++.+.++   ++.++++++|+.+...+.    
T Consensus         7 aGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~g~~~d~g~~~~~~~~~---~~~~l~~~lg~~~~~~~~----   78 (434)
T PRK07233          7 GGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FGGLPIERFYHHIFKSDE---ALLELLDELGLEDKLRWR----   78 (434)
T ss_pred             CCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCcchhhhhhhhccccH---HHHHHHHHcCCCCceeec----
Confidence            4569999997   67999999999999999999999 489999999999987776   999999999997655442    


Q ss_pred             CCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhh-----cCCCCCCCCcHHHHHHHhhChHHHHHHHHHh
Q psy7666         159 PTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLT-----TKTVPKSDESIYDFVSRRFGSEVADYAVSSM  233 (350)
Q Consensus       159 p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~-----~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl  233 (350)
                       . ....++.+|+.++++.. ..+... ..+...+..+......     ......++.|+.+|+++++++...+.++.|+
T Consensus        79 -~-~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~  154 (434)
T PRK07233         79 -E-TKTGYYVDGKLYPLGTP-LELLRF-PHLSLIDKFRLGLLTLLARRIKDWRALDKVPAEEWLRRWSGEGVYEVFWEPL  154 (434)
T ss_pred             -c-CceEEEECCeEecCCCH-HHHHcC-CCCCHHHHHHhHHHHHhhhhcccccccccccHHHHHHHhcCHHHHHHHHHHH
Confidence             1 22334567776555332 222221 2333323332222211     1112356799999999999999999999999


Q ss_pred             hhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHH
Q psy7666         234 ICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLG  313 (350)
Q Consensus       234 ~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa  313 (350)
                      +.++|+.+++++|+.+++..+...         +.. ..    .               .....+++++||+++|+++|+
T Consensus       155 ~~~~~~~~~~~~s~~~~~~~~~~~---------~~~-~~----~---------------~~~~~~~~~~gG~~~l~~~l~  205 (434)
T PRK07233        155 LESKFGDYADDVSAAWLWSRIKRR---------GNR-RY----S---------------LFGEKLGYLEGGFATLIDALA  205 (434)
T ss_pred             HhcccCCCccccCHHHHHHHHhhh---------hcc-cc----c---------------cCCceEeccCCCHHHHHHHHH
Confidence            999999999999998765544311         000 00    0               001246789999999999999


Q ss_pred             Hhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         314 EHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       314 ~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +.+. .|++|++|++|++|+.+++++.+...+|++++
T Consensus       206 ~~l~~~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~  242 (434)
T PRK07233        206 EAIEARGGEIRLGTPVTSVVIDGGGVTGVEVDGEEED  242 (434)
T ss_pred             HHHHhcCceEEeCCCeeEEEEcCCceEEEEeCCceEE
Confidence            9998 78999999999999998888765555666553

>PLN02612 phytoene desaturase

Probab=99.88  E-value=4.6e-21  Score=195.41  Aligned_cols=231  Identities=15%  Similarity=0.208  Sum_probs=161.8

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV  151 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l  151 (350)
                      ++|+||    +||+||+   ++|++|+|+|+++++||++.|++..+|+++|.|+|++.+.++   +++++++++|+.+.+
T Consensus        94 ~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~~~~G~~~D~G~h~~~g~~~---~~~~ll~elG~~~~~  170 (567)
T PLN02612         94 LKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYP---NVQNLFGELGINDRL  170 (567)
T ss_pred             CCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeEcCCCCEEcCCceEEeCCCc---hHHHHHHHhCCcccc
Confidence            556655    9999997   679999999999999999999874489999999999998887   899999999997654


Q ss_pred             cccCCCCCCCcceEEEe--CCeEE--E----CCCC---hhhhcccCCCCCHHHHHHHHHHhh---c---C-CCCCCCCcH
Q psy7666         152 IPITSSHPTAQNRLIYV--NKKLH--K----LPSN---FFSLFKTHSPFSKPLIFSILHDLT---T---K-TVPKSDESI  213 (350)
Q Consensus       152 ~~~~~~~p~~~~~~i~~--~g~~~--~----~p~~---~~~~~~~~~~l~~~~~~~~l~~~~---~---~-~~~~~~~Sv  213 (350)
                      ....     ....+...  ++...  .    +|..   +..++.....+++.++.++...+.   .   + ....++.|+
T Consensus       171 ~~~~-----~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~~~~~~~~~~~~~~~~~d~~Sv  245 (567)
T PLN02612        171 QWKE-----HSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAIGLLPAIVGGQAYVEAQDGLSV  245 (567)
T ss_pred             eecc-----cceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHHhhhHHhcccchhhhhcCcCcH
Confidence            3311     01112111  22221  2    2322   233443334456656555443321   0   1 123578999


Q ss_pred             HHHHHHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhh
Q psy7666         214 YDFVSRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSR  292 (350)
Q Consensus       214 ~~~l~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~  292 (350)
                      .+|+++. +++.+.+.++.|++.++++.+++++|+..++..+..+           +..                     
T Consensus       246 ~e~l~~~~~~~~~~~~~~~~l~~~~~~~~p~~~S~~~~l~~l~~~-----------l~~---------------------  293 (567)
T PLN02612        246 KEWMRKQGVPDRVNDEVFIAMSKALNFINPDELSMQCILIALNRF-----------LQE---------------------  293 (567)
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHhcCCCHHHhhHHHHHHHHHHH-----------Hhc---------------------
Confidence            9999985 6788888899999999999999999998876654321           100                     


Q ss_pred             cccceEEEecCcH-HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe--EEEEeCCCceec
Q psy7666         293 IEKWSVWSVEGGL-QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG--VKAVDQPIHQMT  349 (350)
Q Consensus       293 ~~~~~~~~~~GG~-~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g--v~V~~~~G~~~~  349 (350)
                      ..+.....+.|+. +.++++|++.|. .|++|++|++|++|+.++++  +.|.+.+|++++
T Consensus       294 ~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~  354 (567)
T PLN02612        294 KHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVE  354 (567)
T ss_pred             cCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEE
Confidence            0012345566665 679999999987 78999999999999987665  347777887764

>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]

Probab=99.88  E-value=1.8e-21  Score=179.66  Aligned_cols=229  Identities=17%  Similarity=0.244  Sum_probs=163.9

Q ss_pred             ceeehh----hHhHhhh--cCCCCEEEEecCCCCCcceEEEec---CCCeEEecCCceecC-CCCCchHHHHHHHHcCCC
Q psy7666          79 LLLLVI----RILCTVL--RISTPITLLESSSRLGGWVRSVQS---PEGLIFEKGPRTIRP-KGRLGANTLKLVEDLGLA  148 (350)
Q Consensus        79 ~~v~vi----aGLaaA~--~~G~~VtVlEa~drvGGRi~T~~~---~~G~~~D~Ga~~~~~-~~~~~~~l~~l~~elGl~  148 (350)
                      ++||||    |||+||+  ..-++||||||.+|+||+.+|+..   .+|+.+|+|.++.+. .||   ++..|++++|+.
T Consensus         9 ~~IAVIGsGisGLSAA~~Ls~rhdVTLfEA~~rlGGha~Tv~~~~d~~g~~vDtGfiVyn~~tYp---nl~~Lf~~iGv~   85 (447)
T COG2907           9 RKIAVIGSGISGLSAAWLLSRRHDVTLFEADRRLGGHANTVAGNTDGGGVFVDTGFIVYNERTYP---NLTRLFKTIGVD   85 (447)
T ss_pred             cceEEEcccchhhhhHHhhhcccceEEEeccccccCccceeeccccCCceeecceeEEecCCCcc---hHHHHHHHcCCC
Confidence            567766    9999998  456999999999999999999952   367899999999976 787   999999999996


Q ss_pred             CcccccCCCCCCCcceEEEeCCeEEECCC--ChhhhcccCCCCCHHHHHHHHHHhhc---------CCCCCCCCcHHHHH
Q psy7666         149 DQVIPITSSHPTAQNRLIYVNKKLHKLPS--NFFSLFKTHSPFSKPLIFSILHDLTT---------KTVPKSDESIYDFV  217 (350)
Q Consensus       149 ~~l~~~~~~~p~~~~~~i~~~g~~~~~p~--~~~~~~~~~~~l~~~~~~~~l~~~~~---------~~~~~~~~Sv~~~l  217 (350)
                      ..--.++       -..-+.+|. ..+..  .+.+++.+...+..+.+++++.+.++         ......++|+.+||
T Consensus        86 t~as~Ms-------f~v~~d~gg-lEy~g~tgl~~L~aqk~n~l~pRf~~mlaeiLrf~r~~~~~~d~~~~~~~tl~~~L  157 (447)
T COG2907          86 TKASFMS-------FSVSLDMGG-LEYSGLTGLAGLLAQKRNLLRPRFPCMLAEILRFYRSDLAPSDNAGQGDTTLAQYL  157 (447)
T ss_pred             Cccccee-------EEEEecCCc-eeeccCCCccchhhccccccchhHHHHHHHHHHHhhhhccchhhhcCCCccHHHHH
Confidence            5322211       011122232 23322  12223322222333445666655421         11346789999999


Q ss_pred             HHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccc
Q psy7666         218 SRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKW  296 (350)
Q Consensus       218 ~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~  296 (350)
                      +++ |+..+.++++.|+..++|+.+..+++..-+.. +..+...+|.+.   +                       ...+
T Consensus       158 ~~~~f~~af~e~~l~P~~aaiwstp~~d~~~~pa~~-~~~f~~nhGll~---l-----------------------~~rp  210 (447)
T COG2907         158 KQRNFGRAFVEDFLQPLVAAIWSTPLADASRYPACN-FLVFTDNHGLLY---L-----------------------PKRP  210 (447)
T ss_pred             HhcCccHHHHHHhHHHHHHHHhcCcHhhhhhhhHHH-HHHHHhccCcee---c-----------------------CCCC
Confidence            985 99999999999999999999999887643322 223333444321   1                       1133


Q ss_pred             eEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCce
Q psy7666         297 SVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQ  347 (350)
Q Consensus       297 ~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~  347 (350)
                      .+.++.||....++.|++.+.  ++|++++||.+|..-.+||.|+..+|+.
T Consensus       211 ~wrtV~ggS~~yvq~laa~~~--~~i~t~~~V~~l~rlPdGv~l~~~~G~s  259 (447)
T COG2907         211 TWRTVAGGSRAYVQRLAADIR--GRIETRTPVCRLRRLPDGVVLVNADGES  259 (447)
T ss_pred             ceeEcccchHHHHHHHhcccc--ceeecCCceeeeeeCCCceEEecCCCCc
Confidence            477889999999999999995  7999999999999999999999999986

>TIGR03467 HpnE squalene-associated FAD-dependent desaturase

Probab=99.88  E-value=2e-21  Score=190.26  Aligned_cols=218  Identities=16%  Similarity=0.201  Sum_probs=148.2

Q ss_pred             cCCCCEEEEecCCCCCcceEEEecCCCe--EEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeC
Q psy7666          92 RISTPITLLESSSRLGGWVRSVQSPEGL--IFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVN  169 (350)
Q Consensus        92 ~~G~~VtVlEa~drvGGRi~T~~~~~G~--~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~  169 (350)
                      ++|++|+||||++|+|||++|++ .+|+  .+|.|+|++++.++   ++.+++++||+......     +.....+...+
T Consensus         8 ~~G~~v~vlEa~~~~GG~~~t~~-~~g~~~~~d~G~~~~~~~~~---~~~~l~~~lgl~~~~~~-----~~~~~~~~~~~   78 (419)
T TIGR03467         8 RAGARVTLFEARPRLGGRARSFE-DGGLGQTIDNGQHVLLGAYT---NLLALLRRIGAEPRLQG-----PRLPLPFYDPG   78 (419)
T ss_pred             hCCCceEEEecCCCCCCceeEee-cCCCCcceecCCEEEEcccH---HHHHHHHHhCCchhhhc-----ccCCcceecCC
Confidence            67999999999999999999999 4754  59999999988776   89999999999765332     11111121112


Q ss_pred             CeEEE-----CCCC--hhhhcccCCCCCHHHHHHHHHHhh---c-CCCCCCCCcHHHHHHHh-hChHHHHHHHHHhhhhc
Q psy7666         170 KKLHK-----LPSN--FFSLFKTHSPFSKPLIFSILHDLT---T-KTVPKSDESIYDFVSRR-FGSEVADYAVSSMICGI  237 (350)
Q Consensus       170 g~~~~-----~p~~--~~~~~~~~~~l~~~~~~~~l~~~~---~-~~~~~~~~Sv~~~l~~~-~~~~~~~~~~~pl~~~~  237 (350)
                      +....     +|..  ....+.....+...++.++...+.   . .....++.|+.+|++++ +++.+.+.+++|++.++
T Consensus        79 ~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~p~~~~~  158 (419)
T TIGR03467        79 GRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTRFRALDDTTVGDWLQAAGQSERLIERLWEPLLLSA  158 (419)
T ss_pred             CCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcCccccCCCCHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            22111     2221  111111224555555555443321   1 11245789999999987 48889999999999999


Q ss_pred             ccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHH-HHHHhh
Q psy7666         238 CAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVN-TLGEHL  316 (350)
Q Consensus       238 ~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~-aLa~~L  316 (350)
                      |+.+++++|+.+++..+..          ++.     ..                ....++++++||+++++. +|++.|
T Consensus       159 ~~~~~~~~s~~~~~~~~~~----------~~~-----~~----------------~~~~~~~~~~gG~~~~~~~~l~~~l  207 (419)
T TIGR03467       159 LNTPPERASAALAAKVLRD----------SFL-----AG----------------RAASDLLLPRVPLSELFPEPARRWL  207 (419)
T ss_pred             cCCCHHHHHHHHHHHHHHH----------HHh-----cC----------------CCcceeeeeCCCHHHHHHHHHHHHH
Confidence            9999999998776543321          111     00                012247889999988765 589888


Q ss_pred             c-CCCEEEeCcceeEEEEeCCeEEEEe-CCCceec
Q psy7666         317 S-NKVEVKMDTTCTNLEFLEKGVKAVD-QPIHQMT  349 (350)
Q Consensus       317 ~-~g~~I~l~~~V~~I~~~~~gv~V~~-~~G~~~~  349 (350)
                      . .|++|++|++|++|+.++++|+++. .+|++++
T Consensus       208 ~~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~  242 (419)
T TIGR03467       208 DSRGGEVRLGTRVRSIEANAGGIRALVLSGGETLP  242 (419)
T ss_pred             HHcCCEEEcCCeeeEEEEcCCcceEEEecCCcccc
Confidence            6 7899999999999999988866543 3565543

The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.

>PLN02487 zeta-carotene desaturase

Probab=99.87  E-value=8.2e-21  Score=192.29  Aligned_cols=216  Identities=13%  Similarity=0.167  Sum_probs=157.9

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV  151 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l  151 (350)
                      ++|+||    +||++|+   ++|++|+|||+++++||+++|+...+|+.+|+|+|++.+.++   +++++++++|+.+++
T Consensus        76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~~~~g~~~e~G~h~~~~~~~---~~~~ll~~LGl~~~~  152 (569)
T PLN02487         76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFVDKNGNHIEMGLHVFFGCYN---NLFRLMKKVGADENL  152 (569)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeeeecCCcEEecceeEecCCcH---HHHHHHHhcCCcccc
Confidence            466665    9999997   579999999999999999999964479999999999998876   999999999998765


Q ss_pred             cccCCCCCCCcceEEEeCCeEEE----CC--CCh---hhhcccCCCCCHHHHHHHHHHhhc---------------CCCC
Q psy7666         152 IPITSSHPTAQNRLIYVNKKLHK----LP--SNF---FSLFKTHSPFSKPLIFSILHDLTT---------------KTVP  207 (350)
Q Consensus       152 ~~~~~~~p~~~~~~i~~~g~~~~----~p--~~~---~~~~~~~~~l~~~~~~~~l~~~~~---------------~~~~  207 (350)
                      ..     +.....+...+|....    +|  ..+   ..+++. ..+.+.++.++....+.               .+..
T Consensus       153 ~~-----~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~-~~Ls~~dklr~~~~l~~~~~~~al~~~~~~~~~~~~  226 (569)
T PLN02487        153 LV-----KDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTT-NQLEPYDKARNALALATSPVVRALVDPDGAMRDIRD  226 (569)
T ss_pred             cc-----cccceeEEecCCEEeeeccCCCCCchhhhHHHHHcC-CCCCHHHHHhhcccccccchhhhccCcccccccccc
Confidence            53     2222234444555422    22  211   133332 45565555554322211               1123


Q ss_pred             CCCCcHHHHHHHhhChH-HHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhH
Q psy7666         208 KSDESIYDFVSRRFGSE-VADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESE  286 (350)
Q Consensus       208 ~~~~Sv~~~l~~~~~~~-~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~  286 (350)
                      .+++|+.+|++++.++. +++++++|++.+.++.+++++|+.+++..+..         .+ .    .            
T Consensus       227 ~d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~~~~d~~SA~~~~~vl~~---------~~-~----~------------  280 (569)
T PLN02487        227 LDDISFSDWFTSHGGTRMSIKRMWDPIAYALGFIDCDNISARCMLTIFSL---------FA-T----K------------  280 (569)
T ss_pred             ccCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH---------Hh-h----c------------
Confidence            56799999999998855 99999999999999999999999886554421         00 0    0            


Q ss_pred             HHHhhhcccceEEEecCcHHH-HHHHHHHhhc-CCCEEEeCcceeEEEEeC
Q psy7666         287 LYRRSRIEKWSVWSVEGGLQT-IVNTLGEHLS-NKVEVKMDTTCTNLEFLE  335 (350)
Q Consensus       287 ~y~~~~~~~~~~~~~~GG~~~-L~~aLa~~L~-~g~~I~l~~~V~~I~~~~  335 (350)
                            .....+.+++||++. |++++++.|. .|++|+++++|++|..++
T Consensus       281 ------~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~  325 (569)
T PLN02487        281 ------TEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDK  325 (569)
T ss_pred             ------CCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEec
Confidence                  012236788999995 9999999999 999999999999999973

>TIGR02731 phytoene_desat phytoene desaturase

Probab=99.87  E-value=2.2e-20  Score=185.87  Aligned_cols=223  Identities=15%  Similarity=0.220  Sum_probs=152.5

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      +++|||+||+   ++|++|+|||+++++|||++|++..+|+.+|.|+|++.+.++   +++++++++|+.+.+...    
T Consensus         7 aG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~lg~~~~~~~~----   79 (453)
T TIGR02731         7 AGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWKDEDGDWYETGLHIFFGAYP---NMLQLLKELNIEDRLQWK----   79 (453)
T ss_pred             CCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeECCCCCEEEcCcceeccCCc---hHHHHHHHcCCccceeec----
Confidence            4569999997   679999999999999999999863479999999999998887   899999999997644321    


Q ss_pred             CCCcceEEEe----CCeEE--ECC---CCh---hhhcccCCCCCHHHHHHHHHHhhc------C-CCCCCCCcHHHHHHH
Q psy7666         159 PTAQNRLIYV----NKKLH--KLP---SNF---FSLFKTHSPFSKPLIFSILHDLTT------K-TVPKSDESIYDFVSR  219 (350)
Q Consensus       159 p~~~~~~i~~----~g~~~--~~p---~~~---~~~~~~~~~l~~~~~~~~l~~~~~------~-~~~~~~~Sv~~~l~~  219 (350)
                      +   ...++.    ++...  .+|   ..+   ..++.....+++.++.++...+..      + ....+++|+.+|+++
T Consensus        80 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~  156 (453)
T TIGR02731        80 S---HSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLLPAIVRGQKYVEEQDKYTVTEWLRK  156 (453)
T ss_pred             C---CceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhHHHHhcCccchhhhccCCHHHHHHH
Confidence            1   111221    22222  122   221   222322234556555554443321      1 123578999999997


Q ss_pred             -hhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceE
Q psy7666         220 -RFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSV  298 (350)
Q Consensus       220 -~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~  298 (350)
                       .+++.+.+.++.|++.++++.+++++|+.++++.+..+.           ...                     .+...
T Consensus       157 ~~~~~~~~~~~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~-----------~~~---------------------~g~~~  204 (453)
T TIGR02731       157 QGVPERVNDEVFIAMSKALNFINPDELSMTVVLTALNRFL-----------QER---------------------HGSKM  204 (453)
T ss_pred             cCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH-----------hcC---------------------CCCee
Confidence             488888989999999999999999999988876554211           000                     01112


Q ss_pred             EEecCc-HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-E-EEEeCCCc
Q psy7666         299 WSVEGG-LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-V-KAVDQPIH  346 (350)
Q Consensus       299 ~~~~GG-~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v-~V~~~~G~  346 (350)
                      ....|| +++++++|++.|. .|++|++|++|++|+..+++ + .|++.+|+
T Consensus       205 ~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~  256 (453)
T TIGR02731       205 AFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGE  256 (453)
T ss_pred             EeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCC
Confidence            233444 5778999999887 78999999999999876554 3 35554443

Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.

>PLN02268 probable polyamine oxidase

Probab=99.86  E-value=2e-21  Score=192.35  Aligned_cols=209  Identities=21%  Similarity=0.250  Sum_probs=137.8

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      |+||||+||+   ++|++|+||||+||+|||++|.+ .+|+.+|+|++|+++... .+++.+|++++|++.  .+..   
T Consensus         8 aGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~g~~~d~G~~~i~~~~~-~~~~~~l~~~lgl~~--~~~~---   80 (435)
T PLN02268          8 GGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SFGFPVDMGASWLHGVCN-ENPLAPLIGRLGLPL--YRTS---   80 (435)
T ss_pred             CCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cCCcccCCCCeeEeccCC-CchHHHHHHHhCCce--Eecc---
Confidence            4569999997   57999999999999999999988 589999999999986421 237999999999953  2211   


Q ss_pred             CCCcceEEEe---------CCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcC-CCCCCCCcHHHHHHHh--------
Q psy7666         159 PTAQNRLIYV---------NKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTK-TVPKSDESIYDFVSRR--------  220 (350)
Q Consensus       159 p~~~~~~i~~---------~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~~~~~Sv~~~l~~~--------  220 (350)
                      .  ...+++.         ++....+|......+       ...+.+++.+.... ....+++|+.+|+++.        
T Consensus        81 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  151 (435)
T PLN02268         81 G--DNSVLYDHDLESYALFDMDGNQVPQELVTKV-------GETFERILEETEKVRDEHEEDMSLLQAISIVLERHPELR  151 (435)
T ss_pred             C--CccccccccccccceecCCCCCCCHHHHHHH-------HHHHHHHHHHHHHHHhccCCCcCHHHHHHHHhhhCcccc
Confidence            0  1122222         222222222111000       01122333332221 1235789999987543        


Q ss_pred             ---hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccce
Q psy7666         221 ---FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWS  297 (350)
Q Consensus       221 ---~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~  297 (350)
                         +++.+.+.++.| +.++|+.+++++|+.....     +    ..    +                        .+ .
T Consensus       152 ~~~~~~~~~~~~~~~-~~~~~~~~~~~ls~~~~~~-----~----~~----~------------------------~g-~  192 (435)
T PLN02268        152 LEGLAHEVLQWYLCR-MEGWFAADADTISLKSWDQ-----E----EL----L------------------------EG-G  192 (435)
T ss_pred             cchHHHHHHHHHHHH-HHHHhCCChHhCchhhcCC-----c----cc----c------------------------CC-C
Confidence               345556666667 4567888999998754200     0    00    0                        01 1


Q ss_pred             EEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         298 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       298 ~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ...+.+|+++|+++|++.+    +|++|++|++|.+.+++|.|++.+|++++
T Consensus       193 ~~~~~~G~~~l~~~l~~~~----~i~~~~~V~~i~~~~~~v~v~~~~g~~~~  240 (435)
T PLN02268        193 HGLMVRGYDPVINTLAKGL----DIRLNHRVTKIVRRYNGVKVTVEDGTTFV  240 (435)
T ss_pred             ceeecCCHHHHHHHHhccC----ceeCCCeeEEEEEcCCcEEEEECCCcEEE
Confidence            2458899999999998754    69999999999999999999999987664

>TIGR02732 zeta_caro_desat carotene 7,8-desaturase

Probab=99.86  E-value=1.6e-20  Score=187.74  Aligned_cols=213  Identities=15%  Similarity=0.157  Sum_probs=154.0

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      ++|+||+||+   ++|++|+|||+++++||+++|+...+|+.+|.|+|++.+.++   +++++++++|+.+.+...    
T Consensus         7 ~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~~~~g~~~d~G~~~~~~~~~---~~~~~~~~lg~~~~~~~~----   79 (474)
T TIGR02732         7 AGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWVDGDGNHIEMGLHVFFGCYA---NLFRLMKKVGAEDNLLLK----   79 (474)
T ss_pred             CCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeeecCCCceEeeceEEecCchH---HHHHHHHHcCCccccccc----
Confidence            4569999997   679999999999999999999853579999999999998876   899999999998765431    


Q ss_pred             CCCcceEEEeCCeEEECC------CC---hhhhcccCCCCCHHHHHHHHHHhhc-C--------------CCCCCCCcHH
Q psy7666         159 PTAQNRLIYVNKKLHKLP------SN---FFSLFKTHSPFSKPLIFSILHDLTT-K--------------TVPKSDESIY  214 (350)
Q Consensus       159 p~~~~~~i~~~g~~~~~p------~~---~~~~~~~~~~l~~~~~~~~l~~~~~-~--------------~~~~~~~Sv~  214 (350)
                       .....+...+++...++      ..   +..+++. ..+++.++++++..... +              +...+++|+.
T Consensus        80 -~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~-~~ls~~dklr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  157 (474)
T TIGR02732        80 -EHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTT-SQLKWVDKLRNALALGTSPIVRGLVDYDGAMKTIRDLDKISFA  157 (474)
T ss_pred             -cceeEEEcCCCcccccccCCCCCCchhhhHHHhcC-CCCCHHHHHHHHHHhhhhHHHhhccccchhhhhhhhhccccHH
Confidence             11122333344433221      11   1233332 46677776665544321 0              1134679999


Q ss_pred             HHHHHhhCh-HHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhc
Q psy7666         215 DFVSRRFGS-EVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRI  293 (350)
Q Consensus       215 ~~l~~~~~~-~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~  293 (350)
                      +|++++.++ ..++++++|++.++++.+++++|+.++++.+..+.         .     .                  .
T Consensus       158 ~~l~~~~~~~~~~~~~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~---------~-----~------------------~  205 (474)
T TIGR02732       158 EWFLSHGGSLGSIKRMWDPIAYALGFIDCENISARCMLTIFMLFA---------A-----K------------------T  205 (474)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH---------h-----C------------------C
Confidence            999998766 47999999999999999999999988766543110         0     0                  0


Q ss_pred             ccceEEEecCcHHH-HHHHHHHhhc-CCCEEEeCcceeEEEEeC
Q psy7666         294 EKWSVWSVEGGLQT-IVNTLGEHLS-NKVEVKMDTTCTNLEFLE  335 (350)
Q Consensus       294 ~~~~~~~~~GG~~~-L~~aLa~~L~-~g~~I~l~~~V~~I~~~~  335 (350)
                      .+.....++||++. +.++|++.|. .|++|+++++|++|+.++
T Consensus       206 ~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~  249 (474)
T TIGR02732       206 EASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEK  249 (474)
T ss_pred             CcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEec
Confidence            02235667888877 6677999998 899999999999999864

Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.

>PLN02568 polyamine oxidase

Probab=99.84  E-value=9.2e-20  Score=184.31  Aligned_cols=239  Identities=15%  Similarity=0.184  Sum_probs=156.8

Q ss_pred             hhhHhHhhh---cCC-----CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccccc
Q psy7666          83 VIRILCTVL---RIS-----TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPI  154 (350)
Q Consensus        83 viaGLaaA~---~~G-----~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~  154 (350)
                      ++|||+||.   +.|     ++|+|||+++|+|||++|.+ .+|+.+|.|++|+++..  +++++++++++|+.....+.
T Consensus        14 G~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~g~~--~~~~~~l~~~~g~~~~~~~~   90 (539)
T PLN02568         14 GMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FGGERIEMGATWIHGIG--GSPVYKIAQEAGSLESDEPW   90 (539)
T ss_pred             CHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eCCeEEecCCceeCCCC--CCHHHHHHHHhCCccccCcc
Confidence            349999997   345     99999999999999999999 48999999999998753  34899999999996532210


Q ss_pred             CC-CCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhh--------------cC--------CCCCCCC
Q psy7666         155 TS-SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLT--------------TK--------TVPKSDE  211 (350)
Q Consensus       155 ~~-~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~--------------~~--------~~~~~~~  211 (350)
                      .. ........++..+|.  .++..+..-+.       ..+..++.+..              ..        .....+.
T Consensus        91 ~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  161 (539)
T PLN02568         91 ECMDGFPDRPKTVAEGGF--EVDPSIVESIS-------TLFRGLMDDAQGKLIEPSEVDEVDFVKLAAKAARVCESGGGG  161 (539)
T ss_pred             eecccccccceEEccCCc--CCCHHHHHHHH-------HHHHHHHHHhhcccccccccccccccccchhccchhccCCCC
Confidence            00 000001122223343  22221110000       00111111110              00        0011345


Q ss_pred             cHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHH-HHHHHhhhcCCCCCCcchhHHHHh
Q psy7666         212 SIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIK-GAIKEMMSKRPDLSGYEESELYRR  290 (350)
Q Consensus       212 Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~-g~~~~~~~~~~~~~~~~~~~~y~~  290 (350)
                      |+++|+++++++ ..+.+..|+..++++.+.+.++...+++.+..+++.+++... +.+ .. .  .       ...|. 
T Consensus       162 Sl~~fl~~~l~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~ls~l-s~-~--~-------~~~~~-  228 (539)
T PLN02568        162 SVGSFLRRGLDA-YWDSVSADEQIKGYGGWSRKLLEEAIFTMHENTQRTYTSADDLSTL-DL-A--A-------ESEYR-  228 (539)
T ss_pred             cHHHHHHHHHHH-HHhhcccchhhccccchhHHHHHHHHHHHHHHhhccccccccHhhc-cc-c--c-------cCcce-
Confidence            999999998876 666778899999999999999888888888777655544321 111 00 0  0       00010 


Q ss_pred             hhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         291 SRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       291 ~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                       .. ....+++.||+++|+++|++.|+ +.+|++|++|++|++++++|+|++.+|++++
T Consensus       229 -~~-~g~~~~i~gG~~~Li~~La~~L~-~~~I~ln~~V~~I~~~~~~v~V~~~dG~~~~  284 (539)
T PLN02568        229 -MF-PGEEITIAKGYLSVIEALASVLP-PGTIQLGRKVTRIEWQDEPVKLHFADGSTMT  284 (539)
T ss_pred             -ec-CCCeEEECCcHHHHHHHHHhhCC-CCEEEeCCeEEEEEEeCCeEEEEEcCCCEEE
Confidence             01 12367899999999999999996 4589999999999999999999999997764

>TIGR02734 crtI_fam phytoene desaturase

Probab=99.77  E-value=2e-17  Score=166.65  Aligned_cols=220  Identities=18%  Similarity=0.269  Sum_probs=143.5

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCC--Cc--cccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLA--DQ--VIPI  154 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~--~~--l~~~  154 (350)
                      ++++||+||.   ++|++|+|||+++++||+++|++ .+|+.||.|++|+....    .+.++++++|++  +.  +.+.
T Consensus         6 aG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~----~~~~l~~~lg~~l~~~l~~~~~   80 (502)
T TIGR02734         6 AGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DDGFRFDTGPTVITMPE----ALEELFALAGRDLADYVELVPL   80 (502)
T ss_pred             cCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cCCeEEecCCeEEcccc----HHHHHHHHcCCChhheEEEEEC
Confidence            5679999986   68999999999999999999999 59999999999996432    688899999853  22  2221


Q ss_pred             CCCCCCCcceEEEeCCeEEECCCChhhh---cccCCCCCHH---HHHHHHHH--------hh-cC---------------
Q psy7666         155 TSSHPTAQNRLIYVNKKLHKLPSNFFSL---FKTHSPFSKP---LIFSILHD--------LT-TK---------------  204 (350)
Q Consensus       155 ~~~~p~~~~~~i~~~g~~~~~p~~~~~~---~~~~~~l~~~---~~~~~l~~--------~~-~~---------------  204 (350)
                      +   |  .....+.+|+.+.++.+...+   +....+-...   .+...+..        .+ .+               
T Consensus        81 ~---~--~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  155 (502)
T TIGR02734        81 D---P--FYRLCWEDGSQLDVDNDQEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGYVPFLSPRDLLRADLPQL  155 (502)
T ss_pred             C---C--ceEEECCCCCEEEecCCHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHhHhhHhh
Confidence            1   2  223344456666776543211   1110111111   11111110        00 00               


Q ss_pred             CCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcch
Q psy7666         205 TVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEE  284 (350)
Q Consensus       205 ~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~  284 (350)
                      .......|+.+|+++.+.++.++.++.. ....++.++++.++...+  +            .+. .             
T Consensus       156 ~~~~~~~s~~~~~~~~~~~~~l~~~l~~-~~~~~g~~p~~~~~~~~l--~------------~~~-~-------------  206 (502)
T TIGR02734       156 LALLAWRSLYSKVARFFSDERLRQAFSF-HALFLGGNPFRTPSIYAL--I------------SAL-E-------------  206 (502)
T ss_pred             hhccCcCCHHHHHHhhcCCHHHHHHhcc-cceeeccCcccchHHHHH--H------------HHH-H-------------
Confidence            0123468899999888877777766652 334566777666532210  0            000 0             


Q ss_pred             hHHHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666         285 SELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT  349 (350)
Q Consensus       285 ~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~  349 (350)
                               ...+.+++.||++.++++|++.+. .|++|+++++|++|..++++ +.|.+.+|++++
T Consensus       207 ---------~~~g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~  264 (502)
T TIGR02734       207 ---------REWGVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLD  264 (502)
T ss_pred             ---------hhceEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEE
Confidence                     012467899999999999999998 89999999999999988776 678888887664

Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.

>PLN02328 lysine-specific histone demethylase 1 homolog

Probab=99.74  E-value=1e-16  Score=166.72  Aligned_cols=244  Identities=16%  Similarity=0.140  Sum_probs=142.5

Q ss_pred             cccccccccccccccccccC-CCCCCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCC----eE
Q psy7666          53 ARYLSFKFQDCHCETSIQKR-PFPPDLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEG----LI  120 (350)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G----~~  120 (350)
                      .|++.||+|.+......... +.....++|+||    +||+||.   +.|++|+|+|+++|+|||++|... .|    +.
T Consensus       212 ~~~g~in~gv~~~~~~~~~~~~~~~~~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~~-~g~~~~~~  290 (808)
T PLN02328        212 LEHGYINFGVAPVIKEAQLRSFEGVEPANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMKM-KGDGVVAA  290 (808)
T ss_pred             hccCceeeeccccccccccCCCCCCCCCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCccccccc-CCCCccee
Confidence            48888999987543221111 111122445544    9999998   679999999999999999999984 44    36


Q ss_pred             EecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEE--CCCChhhhcccCCCCCHHHHHHHH
Q psy7666         121 FEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHK--LPSNFFSLFKTHSPFSKPLIFSIL  198 (350)
Q Consensus       121 ~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~--~p~~~~~~~~~~~~l~~~~~~~~l  198 (350)
                      +|+|++|+++..  ++++..+++++|++.....       ....+++.+|+.+.  ++..+...           +.+++
T Consensus       291 ~d~Gas~i~g~~--~npl~~l~~~lgl~~~~~~-------~~~~~~~~dG~~~~~~~~~~v~~~-----------f~~lL  350 (808)
T PLN02328        291 ADLGGSVLTGIN--GNPLGVLARQLGLPLHKVR-------DICPLYLPDGKAVDAEIDSKIEAS-----------FNKLL  350 (808)
T ss_pred             ccCCceeecCCC--ccHHHHHHHHcCCceEecC-------CCceEEeCCCcCcchhhhhhHHHH-----------HHHHH
Confidence            999999998764  3478999999999653222       12355666676431  12111100           11111


Q ss_pred             HHh------hcCCCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHh
Q psy7666         199 HDL------TTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM  272 (350)
Q Consensus       199 ~~~------~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~  272 (350)
                      ...      ..+.....+.|+++|+++. . ..    .     + +..++++.++..  ..++.++...++.+..+....
T Consensus       351 ~~~~klr~~~~~~~~~~D~SLg~~le~~-~-~~----~-----~-~~~~~~e~~Ll~--w~lanlE~~~gs~ls~LSl~~  416 (808)
T PLN02328        351 DRVCKLRQAMIEEVKSVDVNLGTALEAF-R-HV----Y-----K-VAEDPQERMLLN--WHLANLEYANASLMSNLSMAY  416 (808)
T ss_pred             HHHHHHHHhhhhcccccCcCHHHHHHHH-h-hh----h-----c-cCCCHHHHHHHH--HHHHHHhccchhhHHHHHhhh
Confidence            111      1111123578999999642 1 11    0     0 122333333221  122222323333322221111


Q ss_pred             hhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         273 MSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       273 ~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ....         ..|    ......+.+.||+++|+++|++.|    .|++|++|++|.+.+++|.| +.+|++++
T Consensus       417 w~qd---------~~~----e~~G~~~~v~GG~~~Li~aLa~~L----~I~ln~~V~~I~~~~dgV~V-~~~G~~~~  475 (808)
T PLN02328        417 WDQD---------DPY----EMGGDHCFIPGGNDTFVRELAKDL----PIFYERTVESIRYGVDGVIV-YAGGQEFH  475 (808)
T ss_pred             hhcc---------ccc----cCCCeEEEECCcHHHHHHHHHhhC----CcccCCeeEEEEEcCCeEEE-EeCCeEEE
Confidence            0000         000    112346789999999999999998    39999999999999999988 45676664

>PLN02529 lysine-specific histone demethylase 1

Probab=99.74  E-value=1.9e-16  Score=164.06  Aligned_cols=238  Identities=15%  Similarity=0.100  Sum_probs=135.9

Q ss_pred             ccccccccccccccccccCCCCCCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecC-CC--eEEec
Q psy7666          54 RYLSFKFQDCHCETSIQKRPFPPDLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSP-EG--LIFEK  123 (350)
Q Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~-~G--~~~D~  123 (350)
                      |++.+|++.+....+ . -|.....++|+||    |||+||.   ++|++|+|||+++|+|||++|.... +|  +.+|+
T Consensus       138 ~~~~inc~vnp~~~~-~-~~~~~~~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~~~~~g~~~~~Dl  215 (738)
T PLN02529        138 YNGYINFGVSPSFAS-P-IPEEGTEGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQKMGRKGQFAAVDL  215 (738)
T ss_pred             hCCCcceeecccccC-C-CCcccCCCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeecccCCCCceEEec
Confidence            556667666533222 1 1211223556655    9999997   5799999999999999999999842 13  48999


Q ss_pred             CCceecCCCCCchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHH---
Q psy7666         124 GPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHD---  200 (350)
Q Consensus       124 Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~---  200 (350)
                      ||+|+++..  .+++..+++++|++..  +.+   +  ...++..+|...  +......      + ...+.+++..   
T Consensus       216 Gaswi~g~~--~npl~~la~~lgl~~~--~~~---~--~~~~~~~~G~~v--~~~~~~~------~-~~~~~~~l~~~~~  277 (738)
T PLN02529        216 GGSVITGIH--ANPLGVLARQLSIPLH--KVR---D--NCPLYKPDGALV--DKEIDSN------I-EFIFNKLLDKVTE  277 (738)
T ss_pred             CCeeccccc--cchHHHHHHHhCCCcc--ccC---C--CceEEeCCCcCc--chhhhhh------H-HHHHHHHHHHHHH
Confidence            999998765  3579999999998643  221   1  234455566533  2110000      0 0011122211   


Q ss_pred             hhcC-CCCCCCCcHHHHHHHhh------ChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhh
Q psy7666         201 LTTK-TVPKSDESIYDFVSRRF------GSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMM  273 (350)
Q Consensus       201 ~~~~-~~~~~~~Sv~~~l~~~~------~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~  273 (350)
                      +... ....++.|+++|+.+..      -....+.++...+..+....+..++..++..  |             .... 
T Consensus       278 l~~~~~~~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~a~~~~~s~LSl~~--~-------------~~~~-  341 (738)
T PLN02529        278 LRQIMGGFANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEYANAGCLSDLSAAY--W-------------DQDD-  341 (738)
T ss_pred             HHHhcccCccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhceecCCChHHhhhhH--h-------------hhcc-
Confidence            1110 12356899999997531      1111122333222222222222222111100  0             0000 


Q ss_pred             hcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         274 SKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       274 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                         .          +    ..+...+.+.||+++|+++|++.+    .|++|++|++|++.+++|+|++. +++++
T Consensus       342 ---~----------~----e~~G~~~~i~GG~~~Li~aLA~~L----~IrLnt~V~~I~~~~dGVtV~t~-~~~~~  395 (738)
T PLN02529        342 ---P----------Y----EMGGDHCFLAGGNWRLINALCEGV----PIFYGKTVDTIKYGNDGVEVIAG-SQVFQ  395 (738)
T ss_pred             ---c----------c----ccCCceEEECCcHHHHHHHHHhcC----CEEcCCceeEEEEcCCeEEEEEC-CEEEE
Confidence               0          0    112236779999999999999976    49999999999999999999864 34443

>TIGR02733 desat_CrtD C-3',4' desaturase CrtD

Probab=99.74  E-value=2.4e-16  Score=158.58  Aligned_cols=212  Identities=16%  Similarity=0.161  Sum_probs=124.8

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCc-ccccCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ-VIPITSS  157 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~-l~~~~~~  157 (350)
                      ++++||+||.   ++|++|+|||+++++|||++|++ .+|+.||.|+||+....+ ...+.++++++|+... ....+  
T Consensus         9 aG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~G~~fD~G~~~~~~~~~-~~~~~~~~~~lg~~~~~~~~~d--   84 (492)
T TIGR02733         9 AGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RRGFTFDVGATQVAGLEP-GGIHARIFRELGIPLPEAKILD--   84 (492)
T ss_pred             cCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cCCEEEeecceEEEecCc-CCHHHHHHHHcCCCCcccccCC--
Confidence            3449999986   78999999999999999999999 599999999999854221 1267889999998642 22211  


Q ss_pred             CCCCcceEEEeCC-eEEECCCChhh----hcccCCCCCHHHHHHHHHHh-------h---------------------cC
Q psy7666         158 HPTAQNRLIYVNK-KLHKLPSNFFS----LFKTHSPFSKPLIFSILHDL-------T---------------------TK  204 (350)
Q Consensus       158 ~p~~~~~~i~~~g-~~~~~p~~~~~----~~~~~~~l~~~~~~~~l~~~-------~---------------------~~  204 (350)
                       |  .....+.+| ..+.++.+...    +... .+-. ..++..+...       +                     .+
T Consensus        85 -~--~~~~~~~dg~~~~~~~~d~~~~~~~l~~~-~p~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (492)
T TIGR02733        85 -P--ACAVDLPDGSEPIPLWHDPDRWQKERERQ-FPGS-ERFWQLCSQLHQSNWRFAGRDPVLPPRNYWDLLQLVSALRP  159 (492)
T ss_pred             -C--CcEEEECCCceEeeeecCHHHHHHHHHHH-CCCh-HHHHHHHHHHHHHHHHHhhcCCCCCCCCHHHHHHHHHhcCh
Confidence             2  223444555 33344433211    1110 0000 0111111000       0                     00


Q ss_pred             C----CCCCCCcHHHHHHHh--hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCC
Q psy7666         205 T----VPKSDESIYDFVSRR--FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPD  278 (350)
Q Consensus       205 ~----~~~~~~Sv~~~l~~~--~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~  278 (350)
                      .    ......|+.+|+++.  +.+..++.++...+....+.++++.++...+-               ++ ..      
T Consensus       160 ~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~~~~~~---------------~~-~~------  217 (492)
T TIGR02733       160 DTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQEDADETAALYGAT---------------VL-QM------  217 (492)
T ss_pred             hhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccCChhhhhHHHHHH---------------Hh-hc------
Confidence            0    011246777777664  45555555555433222223344443222100               00 00      


Q ss_pred             CCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666         279 LSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG  337 (350)
Q Consensus       279 ~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g  337 (350)
                                   .....+.++++||+++|+++|++.+. .|++|+++++|++|..++++
T Consensus       218 -------------~~~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~  264 (492)
T TIGR02733       218 -------------AQAPHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGR  264 (492)
T ss_pred             -------------cccCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCe
Confidence                         00012467899999999999999998 78999999999999988764

Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.

>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.70  E-value=5.4e-16  Score=155.65  Aligned_cols=218  Identities=19%  Similarity=0.208  Sum_probs=122.4

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcC-CCCc-ccccCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLG-LADQ-VIPITSS  157 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elG-l~~~-l~~~~~~  157 (350)
                      +++||+||.   ++|++|+|||+++++|||++|.+. +||.||+|++++....     ...++++++ +... +...   
T Consensus        12 G~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e~-~Gf~fd~G~~~~~~~~-----~~~~~~~l~~l~~~~l~~~---   82 (487)
T COG1233          12 GLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFEL-DGFRFDTGPSWYLMPD-----PGPLFRELGNLDADGLDLL---   82 (487)
T ss_pred             ChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEec-cceEeccCcceeecCc-----hHHHHHHhccCcccceeee---
Confidence            349999986   789999999999999999999995 8999999999885433     226777777 5442 2221   


Q ss_pred             CCCCcceEEEeCCeEEECCCChhhhccc---CCCCC---HHHHHHHHHH----h----hcCC-C----------------
Q psy7666         158 HPTAQNRLIYVNKKLHKLPSNFFSLFKT---HSPFS---KPLIFSILHD----L----TTKT-V----------------  206 (350)
Q Consensus       158 ~p~~~~~~i~~~g~~~~~p~~~~~~~~~---~~~l~---~~~~~~~l~~----~----~~~~-~----------------  206 (350)
                      .+.......+.+|....+..++......   ..+..   +..+.+.+.+    .    ..+. .                
T Consensus        83 ~~~~~~~~~~~~g~~~~~~~d~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  162 (487)
T COG1233          83 PPDPAYRVFLPDGDAIDVYTDLEATAELLESLEPGDGEALARYLRLLARLYELLAALLLAPPRSELLLVPDTPERLLRLL  162 (487)
T ss_pred             ccCCceeeecCCCCEEEecCCHHHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHhhcCCCchhhhhhccccHHHHHHHH
Confidence            1222223333445655555443211110   01111   1111111111    0    0000 0                


Q ss_pred             CCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhH
Q psy7666         207 PKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESE  286 (350)
Q Consensus       207 ~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~  286 (350)
                      .....++.++++..|.....+..+.......+ .++.+.+  +++.               ++ ..              
T Consensus       163 ~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~~-~~p~~~~--a~~~---------------~~-~~--------------  209 (487)
T COG1233         163 GFSLTSALDFFRGRFGSELLRALLAYSAVYGG-APPSTPP--ALYL---------------LL-SH--------------  209 (487)
T ss_pred             HHhhhhHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCCchh--HHHH---------------HH-HH--------------
Confidence            01122333333333333333333322111111 2222222  1000               00 00              


Q ss_pred             HHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEEeCCCce
Q psy7666         287 LYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAVDQPIHQ  347 (350)
Q Consensus       287 ~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~~~~G~~  347 (350)
                           .....++++++|||+.|+++|++.++ .|++|+++++|++|..+++ ++.|++.+|..
T Consensus       210 -----~~~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~  267 (487)
T COG1233         210 -----LGLSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGEN  267 (487)
T ss_pred             -----hcccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccce
Confidence                 01234689999999999999999999 9999999999999999876 58888888733

>KOG0685|consensus

Probab=99.69  E-value=4.1e-16  Score=150.02  Aligned_cols=230  Identities=17%  Similarity=0.221  Sum_probs=124.5

Q ss_pred             ehhhHhHhhhc----CCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666          82 LVIRILCTVLR----ISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS  157 (350)
Q Consensus        82 ~viaGLaaA~~----~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~  157 (350)
                      |++|||+||.+    .+.+|+||||+||+||||+|+++.+| .+|+||+|+|+..  +|++++++++.|-..-+...   
T Consensus        29 AG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~~~d~-~ielGAqwihG~~--gNpVY~la~~~g~~~~~~~t---  102 (498)
T KOG0685|consen   29 AGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIPFADG-VIELGAQWIHGEE--GNPVYELAKEYGDLKLLEVT---  102 (498)
T ss_pred             CchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEEcCCC-eEeecceeecCCC--CChHHHHHHHhCccceeccC---
Confidence            34599999973    46999999999999999999997555 8999999999843  56999999999821111110   


Q ss_pred             CCCCc-ceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcC-CCCCCCCcHHHHHHHhhChHHHHHHHHHhhh
Q psy7666         158 HPTAQ-NRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTK-TVPKSDESIYDFVSRRFGSEVADYAVSSMIC  235 (350)
Q Consensus       158 ~p~~~-~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~  235 (350)
                      .+... +.-.-.+|+.  +|..+.+.+.        ++...+...... ....+..|+++|+.+.|.+.+.         
T Consensus       103 g~~~~~~~~~~~~g~~--V~~~~~~~~~--------~~~~~~~~~~r~~~~~~~~~SvG~~ln~~~~~~~~---------  163 (498)
T KOG0685|consen  103 GPAYVDNFHTRSNGEV--VPEELLDELN--------EITVTLSDKLREAEIAHDEGSVGEYLNSEFWDELR---------  163 (498)
T ss_pred             CccccceeEEEecCcc--CcHHHHHHHH--------HHHHhhhhhcccccccCccccHHHHHHHHHHHHhc---------
Confidence            01111 1112223332  2221111100        111111111111 0125778999999864332211         


Q ss_pred             hcccCCcc-ccc-HHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhccc-ceEEEecCcHHHHHHHH
Q psy7666         236 GICAGDAK-KIS-VNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEK-WSVWSVEGGLQTIVNTL  312 (350)
Q Consensus       236 ~~~~~~~~-~lS-~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~-~~~~~~~GG~~~L~~aL  312 (350)
                        ...+++ +-. +...+..+.+.+++..+. ..+..-.+.  +.      .. |.  ..++ ........|+..+++.|
T Consensus       164 --~~e~~~~~k~l~~~~~~~~~k~e~~~~~~-d~l~evs~~--~~------~e-y~--~~~ge~~~~~~~kGy~~iL~~l  229 (498)
T KOG0685|consen  164 --GPENPEIDKTLAEEILNVYFKVECSITGA-DNLSEVSLR--AL------LE-YT--ECPGEELLIWNKKGYKRILKLL  229 (498)
T ss_pred             --cccccchhhHHHHHHHHHHHHHheeeecc-Cchhhhhhh--hc------cc-ee--ecCchhhheechhHHHHHHHHH
Confidence              112221 111 222344444443332110 000000000  00      00 00  0111 12344678999999999


Q ss_pred             HHhhc-C----C--CEEEeCcceeEEEEeCC-eEEEEeCCCceecC
Q psy7666         313 GEHLS-N----K--VEVKMDTTCTNLEFLEK-GVKAVDQPIHQMTK  350 (350)
Q Consensus       313 a~~L~-~----g--~~I~l~~~V~~I~~~~~-gv~V~~~~G~~~~~  350 (350)
                      ++.++ .    |  .+|+++++|.+|.+++. .|.|++.||+++.+
T Consensus       230 ~~~~p~~~i~~~~~~~~~~~~rv~~I~~~~~~~v~l~c~dg~v~~a  275 (498)
T KOG0685|consen  230 MAVIPAQNIELGLWKRIHLNTRVENINWKNTGEVKLRCSDGEVFHA  275 (498)
T ss_pred             hccCCCcchhcCchhhhcccccceeeccCCCCcEEEEEeCCcEEec
Confidence            99887 1    1  34555599999999864 59999999998764

>PLN03000 amine oxidase

Probab=99.68  E-value=1.1e-15  Score=159.41  Aligned_cols=244  Identities=16%  Similarity=0.149  Sum_probs=134.9

Q ss_pred             cccccccccccccccccccCCCCCCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCC---CeEEe
Q psy7666          53 ARYLSFKFQDCHCETSIQKRPFPPDLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPE---GLIFE  122 (350)
Q Consensus        53 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~---G~~~D  122 (350)
                      .||+.||+|..-....  .-|.....++|+||    +||+||.   +.|++|+|+|+++|+|||+.|.+..+   |+.+|
T Consensus       161 ~r~G~in~g~~~~~~~--~~~~~~~~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~~~g~~~~~~~D  238 (881)
T PLN03000        161 VTHGYINFGIAQAIKD--KFPAQSSKSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKKMEANRVGAAAD  238 (881)
T ss_pred             HHcCcccHHHHHHHHh--hccccCCCCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceecccCCCCceEee
Confidence            4889999998743221  11211122445554    9999987   57999999999999999999998422   57899


Q ss_pred             cCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhh
Q psy7666         123 KGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLT  202 (350)
Q Consensus       123 ~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~  202 (350)
                      +|++|+++..  ++++..+++++|++.  +..     .....+++.+|+..  |........    .....+...+..+.
T Consensus       239 lGas~i~g~~--~npl~~L~~qlgl~l--~~~-----~~~~~ly~~~Gk~v--~~~~~~~ve----~~fn~lLd~~~~lr  303 (881)
T PLN03000        239 LGGSVLTGTL--GNPLGIIARQLGSSL--YKV-----RDKCPLYRVDGKPV--DPDVDLKVE----VAFNQLLDKASKLR  303 (881)
T ss_pred             cCCeEEeCCC--ccHHHHHHHHcCCce--eec-----CCCCeEEEeCCcCC--chhhhhhHH----HHHHHHHHHHHHHH
Confidence            9999998765  357888999999964  331     12345667777743  221100000    00001111111110


Q ss_pred             c-CCCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCC
Q psy7666         203 T-KTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSG  281 (350)
Q Consensus       203 ~-~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~  281 (350)
                      . ......+.|+++++.. +.    +++ .    .  ....++.++..  ..+..++...++.+..+.... .+..    
T Consensus       304 ~l~~~~~~D~SLg~aLe~-~~----~~~-g----~--~~t~e~~~Ll~--w~lanLE~~~as~ls~LSl~~-wdqd----  364 (881)
T PLN03000        304 QLMGDVSMDVSLGAALET-FR----QVS-G----N--DVATEEMGLFN--WHLANLEYANAGLVSKLSLAF-WDQD----  364 (881)
T ss_pred             HHhcccCcCCcHHHHHHH-HH----HHH-c----c--cCCHHHHHHHH--HHHHHHhcccccCHHHHHHHH-hhhc----
Confidence            0 0112346788776531 11    100 0    0  00111111110  111112222222222211110 0000    


Q ss_pred             cchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCC
Q psy7666         282 YEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQP  344 (350)
Q Consensus       282 ~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~  344 (350)
                          ..|    ......+.+.||+++|+++|++.|+    |+++++|++|.+.+++|.|++.+
T Consensus       365 ----~~~----e~~G~~~~v~GG~~~LieaLa~~L~----I~Ln~~Vt~I~~~~dgV~V~~~~  415 (881)
T PLN03000        365 ----DPY----DMGGDHCFLPGGNGRLVQALAENVP----ILYEKTVQTIRYGSNGVKVIAGN  415 (881)
T ss_pred             ----ccc----cCCCceEEeCCCHHHHHHHHHhhCC----cccCCcEEEEEECCCeEEEEECC
Confidence                000    0122357799999999999999983    99999999999999999998764

>PLN02676 polyamine oxidase

Probab=99.66  E-value=1.8e-15  Score=151.73  Aligned_cols=219  Identities=15%  Similarity=0.130  Sum_probs=127.9

Q ss_pred             hhhHhHhhh---cCCC-CEEEEecCCCCCcceEEEecCCCeEEecCCceecCC-CCCchHHHHHHHHcCCCCcccccCCC
Q psy7666          83 VIRILCTVL---RIST-PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPK-GRLGANTLKLVEDLGLADQVIPITSS  157 (350)
Q Consensus        83 viaGLaaA~---~~G~-~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~-~~~~~~l~~l~~elGl~~~l~~~~~~  157 (350)
                      +++||+||+   +.|. +|+|||+++|+|||+.+.. .+|+.+|.|++|++.. .+..+.++++++++|+......    
T Consensus        35 G~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~g~~~d~g~~~~~~~~~~~~~~~~~l~~~~g~~~~~~~----  109 (487)
T PLN02676         35 GMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FAGVSVELGANWVEGVGGPESNPIWELANKLKLRTFYSD----  109 (487)
T ss_pred             CHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CCCeEEecCCEEEEcccCcccChHHHHHHhcCCceeecC----
Confidence            349999997   5687 6999999999999999998 4899999999999641 1113589999999999653221    


Q ss_pred             CCCCcceEEE-eCCeEEECCCChh-hhcccCCCCCHHHHHHHHHHhhcC--CCCCCCCcH--HHHHHHhhChHHHHHHHH
Q psy7666         158 HPTAQNRLIY-VNKKLHKLPSNFF-SLFKTHSPFSKPLIFSILHDLTTK--TVPKSDESI--YDFVSRRFGSEVADYAVS  231 (350)
Q Consensus       158 ~p~~~~~~i~-~~g~~~~~p~~~~-~~~~~~~~l~~~~~~~~l~~~~~~--~~~~~~~Sv--~~~l~~~~~~~~~~~~~~  231 (350)
                       .......++ .+|+.+  +.... .+...   +  ..+.++.......  ....++.|+  .+++.+............
T Consensus       110 -~~~~~~~~~~~~g~~~--~~~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~  181 (487)
T PLN02676        110 -FDNLSSNIYKQDGGLY--PKKVVQKSMKV---A--DASDEFGENLSISLSAKKAVDISILTAQRLFGQVPKTPLEMVID  181 (487)
T ss_pred             -ccccceeEECCCCCCC--CHHHHHHHHHH---H--HHHHHHHHHHHHhhcccCCCCccHHHHHHHHhhCCCCHHHHHHH
Confidence             111122333 255432  21110 00000   0  0011111111111  123456777  444544331111111111


Q ss_pred             Hhhh-hcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEe--cCcHHHH
Q psy7666         232 SMIC-GICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSV--EGGLQTI  308 (350)
Q Consensus       232 pl~~-~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~--~GG~~~L  308 (350)
                      -+.. ..++.+++++|+...+.        .     +..    .                  ..+...+.+  .||+++|
T Consensus       182 ~~~~~~~~~~~~~~~S~~~~~~--------~-----~~~----~------------------~~g~~~~~~~~~~G~~~l  226 (487)
T PLN02676        182 YYNYDYEFAEPPRVTSLKNTEP--------N-----PTF----V------------------DFGEDEYFVADPRGYESL  226 (487)
T ss_pred             HHhccceeccCccccchhhcCc--------c-----ccc----c------------------cCCCceEEeecCCCHHHH
Confidence            1111 22566777777644211        0     000    0                  001123334  6899999


Q ss_pred             HHHHHHhhc-C------CCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         309 VNTLGEHLS-N------KVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       309 ~~aLa~~L~-~------g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +++|++.+. .      +++|+||++|++|.+++++|+|++.+|++++
T Consensus       227 ~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV~V~~~~G~~~~  274 (487)
T PLN02676        227 VYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGVTVKTEDGSVYR  274 (487)
T ss_pred             HHHHHhhcccccccccCCCceecCCEeeEEEEcCCcEEEEECCCCEEE
Confidence            999999884 1      3689999999999999999999999998765

>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO)

Probab=99.65  E-value=2.2e-16  Score=153.51  Aligned_cols=63  Identities=32%  Similarity=0.508  Sum_probs=55.2

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCC--CeEEecCCceecCCCCCchHHHHHHHHcCCCCc
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWVRSVQSPE--GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ  150 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~--G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~  150 (350)
                      ||||+||+   ++|++|+||||++|+|||++|++. +  |+.+|+|+++|.+.++   ++..++.++|+..+
T Consensus         1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~~-~~~g~~~e~G~~~~~~~~~---~~~~~~~~l~~~~~   68 (450)
T PF01593_consen    1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFRF-DNPGFTFELGAHRFFGMYP---NLLNLIDELGLELS   68 (450)
T ss_dssp             HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEEE-TTTTEEEESSS-EEETTSH---HHHHHHHHHTHHTT
T ss_pred             ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEecC-CccceeecCCcccccccch---hhHHHHHHhhhccc
Confidence            69999998   689999999999999999999995 6  9999999999988775   79999999998543

The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....

>COG1231 Monoamine oxidase [Amino acid transport and metabolism]

Probab=99.63  E-value=1.8e-15  Score=145.57  Aligned_cols=222  Identities=12%  Similarity=0.082  Sum_probs=123.0

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHP  159 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p  159 (350)
                      ..|||+||+   ++|++|+|||+++|+|||+.|.+. .|-+.|+|.+++.|.++   .++.+++++|++.+.+..+   .
T Consensus        16 GlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r~-~~~~~d~gG~~i~p~~~---~~l~~~k~~gv~~~~fi~~---g   88 (450)
T COG1231          16 GLAGLSAAYELKKAGYQVQILEARDRVGGRSLTARA-GGEYTDLGGQYINPTHD---ALLAYAKEFGVPLEPFIRD---G   88 (450)
T ss_pred             chHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEec-cceeeccCCcccCccch---hhhhhHHhcCCCCCceecc---C
Confidence            349999998   789999999999999999999994 88999999999988765   9999999999976443321   1


Q ss_pred             CCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHH--HhhcC-----CCCCCCCcHHHHHHHhhChHHHHHHHHH
Q psy7666         160 TAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILH--DLTTK-----TVPKSDESIYDFVSRRFGSEVADYAVSS  232 (350)
Q Consensus       160 ~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~--~~~~~-----~~~~~~~Sv~~~l~~~~~~~~~~~~~~p  232 (350)
                      ..-..|++....   .|.-.......+... ...+.....  +...+     ..+.+.+++.+| . .++   .+.+-.+
T Consensus        89 ~~~~~~~~~~~~---~p~~~~~~~~d~~~~-~~~~~~~a~~~~~~~~~~t~~~~e~~~~~~~~W-~-~~~---~~~~~~~  159 (450)
T COG1231          89 DNVIGYVGSSKS---TPKRSLTAAADVRGL-VAELEAKARSAGELDPGLTPEDRELDLESLAAW-K-TSS---LRGLSRD  159 (450)
T ss_pred             cccccccccccc---cchhccchhhhhcch-hhhhhhhhhcccccCcccCcchhhhhhHHHHhh-h-hcc---ccccccC
Confidence            111122221111   121100000000000 000111110  00111     123556777887 1 111   1111111


Q ss_pred             hhhh-ccc-CCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHH
Q psy7666         233 MICG-ICA-GDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVN  310 (350)
Q Consensus       233 l~~~-~~~-~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~  310 (350)
                      +-.. .++ .++.+.++..-+...+    ....+..++.                  +    ......+...|||++|++
T Consensus       160 ~~a~~~~g~~~~~~~~~~~d~~~~~----~~~~~~~~~~------------------~----e~~~~~~~~~GGmd~la~  213 (450)
T COG1231         160 PGARVSPGPIEPGDVSLLHDALPLR----SASVVDRGIG------------------G----EIRTQMLQRLGGMDQLAE  213 (450)
T ss_pred             ccceeccCCCCcccccchhhhhhhh----hhhhcccccc------------------c----cccchhhccCccHHHHHH
Confidence            1111 122 2233332211100000    0000000000                  0    011224445599999999


Q ss_pred             HHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666         311 TLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM  348 (350)
Q Consensus       311 aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~  348 (350)
                      ++++.|.  ..|.++++|++|.+.+++|+|++.+..++
T Consensus       214 Afa~ql~--~~I~~~~~V~rI~q~~~gV~Vt~~~~~~~  249 (450)
T COG1231         214 AFAKQLG--TRILLNEPVRRIDQDGDGVTVTADDVGQY  249 (450)
T ss_pred             HHHHHhh--ceEEecCceeeEEEcCCeEEEEeCCcceE
Confidence            9999996  79999999999999999999999984443

>PTZ00363 rab-GDP dissociation inhibitor; Provisional

Probab=99.63  E-value=4.2e-14  Score=139.71  Aligned_cols=225  Identities=10%  Similarity=0.059  Sum_probs=141.6

Q ss_pred             hHhHhhh---cCCCCEEEEecCCCCCcceEEEec-------------------CCCeEEecCCceecCCCCCchHHHHHH
Q psy7666          85 RILCTVL---RISTPITLLESSSRLGGWVRSVQS-------------------PEGLIFEKGPRTIRPKGRLGANTLKLV  142 (350)
Q Consensus        85 aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~-------------------~~G~~~D~Ga~~~~~~~~~~~~l~~l~  142 (350)
                      +|+++|.   ++|.+|.++|++++.||+.+|...                   ...+.+|++|+.++...    .+.+++
T Consensus        15 ~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~l~~l~~~f~~~~~~~~~~~~~r~~~iDL~Pk~l~~~G----~lv~lL   90 (443)
T PTZ00363         15 KECILSGLLSVNGKKVLHMDRNPYYGGESASLNLTQLYKKFKPGETPPESLGRNRDWNVDLIPKFIMASG----ELVKIL   90 (443)
T ss_pred             HHHHHHhhhhhCCCEEEEecCCCCcCcccccccHHHHHHhhcccCCCchhcccccccccccCCeeeecCC----hHHHHH
Confidence            6666654   789999999999999999999831                   02456888999887665    688898


Q ss_pred             HHcCCCCcccccCCCCCCCcceEEE-eCCeEEECCCChhhhcccCCCCCH---HHHHHHHHHhhc----C---CCC--CC
Q psy7666         143 EDLGLADQVIPITSSHPTAQNRLIY-VNKKLHKLPSNFFSLFKTHSPFSK---PLIFSILHDLTT----K---TVP--KS  209 (350)
Q Consensus       143 ~elGl~~~l~~~~~~~p~~~~~~i~-~~g~~~~~p~~~~~~~~~~~~l~~---~~~~~~l~~~~~----~---~~~--~~  209 (350)
                      .+.|+...+...     .-...+++ .+|+.+.+|.+..+.++. +.+..   ..+.+++.....    +   +..  .+
T Consensus        91 ~~s~v~ryleF~-----~l~g~~v~~~~g~~~~vP~s~~~~~~s-~ll~l~eKr~l~kfl~~v~~~~~~~~~~~~~~~~d  164 (443)
T PTZ00363         91 LHTDVTRYLEFK-----VIDGSYVYQKEGKIHKVPATDMEALSS-PLMGFFEKNRCKNFLQYVSNYDENDPETHKGLNLK  164 (443)
T ss_pred             hhcCccceeeeE-----EeceEEEEecCCeEEECCCCHHHHhhC-CCcchhhHHHHHHHHHHHHhhccCChhhhcccCcc
Confidence            888987644332     11346677 789999999876655554 23332   223333332211    1   111  34


Q ss_pred             CCcHHHHHHHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHH
Q psy7666         210 DESIYDFVSRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELY  288 (350)
Q Consensus       210 ~~Sv~~~l~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y  288 (350)
                      ..|+.+|+++. +.+...+ ++..+++.....+..+.++...+..+..+..+   +  +..    +              
T Consensus       165 ~~T~~d~L~~~~ls~~~~d-~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S---~--~~~----g--------------  220 (443)
T PTZ00363        165 TMTMAQLYKKFGLEDNTID-FVGHAVALYTNDDYLNKPAIETVMRIKLYMDS---L--SRY----G--------------  220 (443)
T ss_pred             cCCHHHHHHHhCCCHHHHH-HHHHHHHhhcccccccCCHHHHHHHHHHHHHH---H--hhc----c--------------
Confidence            68999999764 4444443 33333333222211122333333322211110   0  110    1              


Q ss_pred             HhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe--EEEEeCCCceec
Q psy7666         289 RRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG--VKAVDQPIHQMT  349 (350)
Q Consensus       289 ~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g--v~V~~~~G~~~~  349 (350)
                            ...+.++.||++.|+++|++.+. .|++++|+++|++|..++++  +.|++.+|++++
T Consensus       221 ------~~p~~yp~gG~g~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~  278 (443)
T PTZ00363        221 ------KSPFIYPLYGLGGLPQAFSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAK  278 (443)
T ss_pred             ------CCcceeeCCCHHHHHHHHHHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEE
Confidence                  11256789999999999998887 78999999999999987644  678999998764

>TIGR02730 carot_isom carotene isomerase

Probab=99.61  E-value=5.3e-14  Score=141.63  Aligned_cols=225  Identities=15%  Similarity=0.071  Sum_probs=127.1

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCC--CchHHHHHHHHcCCCCcccccCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGR--LGANTLKLVEDLGLADQVIPITS  156 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~--~~~~l~~l~~elGl~~~l~~~~~  156 (350)
                      ++++||+||.   ++|++|+|||+++.+||++++++ .+|+.||.|+|++.+..+  ..+.+.+++..+|...+..+.  
T Consensus         8 aG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~fd~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--   84 (493)
T TIGR02730         8 SGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-REGYRFDVGASMIFGFGDKGTTNLLTRALAAVGRKLETIPD--   84 (493)
T ss_pred             CcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cCCEEEEecchhheecCCcccccHHHHHHHHcCCcccccCC--
Confidence            4569999986   68999999999999999999999 599999999999853210  012566778777754333321  


Q ss_pred             CCCCCcceEEEeCCeEEECCCChhhhcccC---CCCCHHHHHHHHHH---hhc--------CCC----------------
Q psy7666         157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTH---SPFSKPLIFSILHD---LTT--------KTV----------------  206 (350)
Q Consensus       157 ~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~---~~l~~~~~~~~l~~---~~~--------~~~----------------  206 (350)
                         .....+.+.+|....++.+.......+   .+-....+.+++..   .+.        +..                
T Consensus        85 ---~~~~~~~~~~g~~~~~~~d~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (493)
T TIGR02730        85 ---PVQIHYHLPNGLNVKVHREYDDFIQELVAKFPHEKEGIRRFYDECWQVFNCLNSMELLSLEEPRYLFRVFFKHPLAC  161 (493)
T ss_pred             ---CccEEEECCCCeeEeeecCHHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHHHhhhhccccChHHHHHHHhhchhhh
Confidence               111233344565555555432111110   11111111111111   000        000                


Q ss_pred             ----CCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccC-CcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCC
Q psy7666         207 ----PKSDESIYDFVSRRFGSEVADYAVSSMICGICAG-DAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSG  281 (350)
Q Consensus       207 ----~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~-~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~  281 (350)
                          .....|+.+++++.|.++.++.++...+. .++. ++.+.++...                .+.  + .       
T Consensus       162 ~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~-~~~~~p~~~~p~~~~----------------~~~--~-~-------  214 (493)
T TIGR02730       162 LGLAKYLPQNAGDIARRYIRDPGLLKFIDIECF-CWSVVPADQTPMINA----------------GMV--F-S-------  214 (493)
T ss_pred             hHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHH-hccCCCcccchhhhH----------------HHh--h-c-------
Confidence                00124455555554444444444332111 1121 1122221110                000  0 0       


Q ss_pred             cchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666         282 YEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT  349 (350)
Q Consensus       282 ~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~  349 (350)
                                .....+++++.||++.++++|++.+. .|++|+++++|++|..++++ +.|.+.+|++++
T Consensus       215 ----------~~~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~  274 (493)
T TIGR02730       215 ----------DRHYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIY  274 (493)
T ss_pred             ----------ccccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEE
Confidence                      00123578899999999999999999 89999999999999987664 567777887654

Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.

>KOG0029|consensus

Probab=99.59  E-value=2.2e-14  Score=143.38  Aligned_cols=70  Identities=21%  Similarity=0.245  Sum_probs=60.1

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ  150 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~  150 (350)
                      ++||||    |||+||.   ..|++|+||||+||+|||++|++..++..+|+|++|+++.+.  |++.-+.+++|++..
T Consensus        16 ~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~~~~~~~vd~Gas~~~g~~~--npl~~l~~qlgl~~~   92 (501)
T KOG0029|consen   16 KKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFKSEGGDHVDLGASVLTGVYN--NPLALLSKQLGLELY   92 (501)
T ss_pred             CcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEecCCCCeeecCCceecCcCc--cHHHHHHHHhCcccc
Confidence            456555    9999998   579999999999999999999995455569999999998873  689999999999763

>COG3349 Uncharacterized conserved protein [Function unknown]

Probab=99.55  E-value=2.3e-14  Score=140.26  Aligned_cols=214  Identities=16%  Similarity=0.189  Sum_probs=140.9

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      |++|||+||+   .+|++||||||++++||.+.|++..||.+.|+|-|.|.+.|+   +++.++++++.++.+..-.   
T Consensus         8 aG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~~~dg~~~E~glh~f~~~Y~---n~~~ll~~~~~~~~~~~~~---   81 (485)
T COG3349           8 AGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWRDSDGNHVEHGLHVFFGCYY---NLLTLLKELPIEDRLQLRE---   81 (485)
T ss_pred             ccHHHHHHHHHHHhCCCceEEEeccCccCceeeeeecCCCCeeeeeeEEechhHH---HHHHHhhhCCchheeehHh---
Confidence            4469999998   689999999999999999999998899999999999999987   9999999999876444311   


Q ss_pred             CCCcceEEE---eCCeEEEC-------CCC-hhhhcccCCCCCHHHHHHHHHHhh-------cCCCCCCCCcHHHHHHHh
Q psy7666         159 PTAQNRLIY---VNKKLHKL-------PSN-FFSLFKTHSPFSKPLIFSILHDLT-------TKTVPKSDESIYDFVSRR  220 (350)
Q Consensus       159 p~~~~~~i~---~~g~~~~~-------p~~-~~~~~~~~~~l~~~~~~~~l~~~~-------~~~~~~~~~Sv~~~l~~~  220 (350)
                        ....++-   .+|..-++       |.. +..++.. +.+.++++.+++....       +...+.++.|+.|||++.
T Consensus        82 --~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~g~~~~~~eld~~s~~d~l~~~  158 (485)
T COG3349          82 --HTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRL-PQLPRREKIRFVLRLGDAPIGADRSLRELDKISFADWLKEK  158 (485)
T ss_pred             --hhhhhcccCCCCCcccccccCCCCCcchhhhhhhhc-cccCHHHHhHHhhccccccchhHHHHHHHhcccHHHHHHHh
Confidence              0111111   12222112       111 1122222 3344444444333221       112357899999999984


Q ss_pred             -hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEE
Q psy7666         221 -FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVW  299 (350)
Q Consensus       221 -~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~  299 (350)
                       -........+.|++......+++..|++..+..+..+.          +    .+.                 +..-..
T Consensus       159 g~~~~~~k~~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~----------~----~~~-----------------~~~i~~  207 (485)
T COG3349         159 GAREGAYKAAFAPIALALTFIDPEGCSARFFLTILNLFL----------I----VTL-----------------EASILR  207 (485)
T ss_pred             CCCchhHHHHHHHHHHhhcccCcccCcchhHHHHHHHHH----------H----hcc-----------------Ccchhh
Confidence             44666777888888777778889999866544332211          0    000                 000123


Q ss_pred             EecCcHH-HHHHHHHHhhc-CCCEEEeCcceeEEEEeC
Q psy7666         300 SVEGGLQ-TIVNTLGEHLS-NKVEVKMDTTCTNLEFLE  335 (350)
Q Consensus       300 ~~~GG~~-~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~  335 (350)
                      .+.|+.. .+...+.+.++ .|.+++...+|+.|..+.
T Consensus       208 ~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~  245 (485)
T COG3349         208 NLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDG  245 (485)
T ss_pred             hhcCCCcceeeehhhhhccccCceeeccceeeeeeccc
Confidence            3455533 37778888898 899999999999998875

>PLN02976 amine oxidase

Probab=99.50  E-value=5.2e-13  Score=143.53  Aligned_cols=257  Identities=19%  Similarity=0.231  Sum_probs=137.1

Q ss_pred             ccccccccccccccCCCCCCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecC
Q psy7666          58 FKFQDCHCETSIQKRPFPPDLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRP  130 (350)
Q Consensus        58 ~~~~~~~~~~~~~~~~~~~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~  130 (350)
                      +.++..+|...    +.... ++|+||    +||+||.   +.|++|+|||+++++|||+++.+...|+.+|+|++|+++
T Consensus       678 ~~~~~~~~~~~----~~~~~-~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~~~~g~pvDlGas~i~G  752 (1713)
T PLN02976        678 IEMGGNHCVLC----DSVDR-KKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDRSSLSVPVDLGASIITG  752 (1713)
T ss_pred             HhcCCCCCccC----CcCCC-CcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeeccccCCceeccCcEEEec
Confidence            45555666544    22222 345554    9999986   579999999999999999999874368999999999986


Q ss_pred             CCC------CchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHh---
Q psy7666         131 KGR------LGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDL---  201 (350)
Q Consensus       131 ~~~------~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~---  201 (350)
                      ...      ..+++..+++++|+......     .. ...|...+|+  .+|......+.       ..+.+++...   
T Consensus       753 ~~~nv~~~r~~np~~~la~qlGl~l~~~~-----~~-~~~yd~~~G~--~V~~e~~~~v~-------~~fn~lld~~~~~  817 (1713)
T PLN02976        753 VEADVATERRPDPSSLICAQLGLELTVLN-----SD-CPLYDVVTGE--KVPADLDEALE-------AEYNSLLDDMVLL  817 (1713)
T ss_pred             ccccccccccccHHHHHHHhcCCcccccc-----CC-CceeEccCCc--CCCHHHHHHHH-------HHHHHHHHHHHHH
Confidence            421      01245568899999653222     11 1122223444  23332211100       0111222211   


Q ss_pred             hcC-CCCCCCCcHHHHHHHhhChHH----------------HHHHHHHhhhhcccCCcccccHHHHHHHHHHH------H
Q psy7666         202 TTK-TVPKSDESIYDFVSRRFGSEV----------------ADYAVSSMICGICAGDAKKISVNFLMAKLFEL------E  258 (350)
Q Consensus       202 ~~~-~~~~~~~Sv~~~l~~~~~~~~----------------~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~------~  258 (350)
                      ... .....+.|+++||...+....                .+.+.......+.+...+..+....+......      .
T Consensus       818 ~~~~g~~a~d~SLgd~Le~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~v~G~~~er~s~~~~Ls~~er~lL~w~~~  897 (1713)
T PLN02976        818 VAQKGEHAMKMSLEDGLEYALKRRRMPRPGVDIDETELGNAADDLYDSASTGVDGGHCEKESKEDVLSPLERRVMNWHFA  897 (1713)
T ss_pred             HhhcccCccCCCHHHHHHHHHhhhhccccccccchhhcccchhhhhhhhhhcccccchhhhhHHHhhCHHHHHHHHHHHH
Confidence            111 122457899999986442110                00111111122333444444433322111100      0


Q ss_pred             Hh-c--cchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEe-
Q psy7666         259 QL-H--GGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFL-  334 (350)
Q Consensus       259 ~~-~--gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~-  334 (350)
                      .. +  +.-+.-+....+.         +...|.  .. ....+.+.|||++|+++|++.|    .|+||++|++|.+. 
T Consensus       898 ~lE~~~aa~L~eVSl~~~~---------qd~~y~--~f-gG~~~rIkGGYqqLIeALAe~L----~IrLNtpVtrId~s~  961 (1713)
T PLN02976        898 HLEYGCAALLKEVSLPYWN---------QDDVYG--GF-GGAHCMIKGGYSNVVESLAEGL----DIHLNHVVTDVSYGS  961 (1713)
T ss_pred             hhcccccCCHHHhhhhhhh---------cccccc--cC-CCceEEeCCCHHHHHHHHHhhC----CeecCCeEEEEEecC
Confidence            00 0  0000000000000         000010  01 2246779999999999999987    39999999999994 


Q ss_pred             ---------CCeEEEEeCCCceecC
Q psy7666         335 ---------EKGVKAVDQPIHQMTK  350 (350)
Q Consensus       335 ---------~~gv~V~~~~G~~~~~  350 (350)
                               +++|.|++.+|+++++
T Consensus       962 ~d~~~~~s~~dGVtVtTsDGetftA  986 (1713)
T PLN02976        962 KDAGASGSSRKKVKVSTSNGSEFLG  986 (1713)
T ss_pred             CcccccccCCCcEEEEECCCCEEEe
Confidence                     3579999999987753

>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase

Probab=99.50  E-value=5.6e-13  Score=128.99  Aligned_cols=215  Identities=13%  Similarity=0.116  Sum_probs=140.2

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEE-ecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIF-EKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS  157 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~-D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~  157 (350)
                      |++|||++|+   +.|.+|+|+|+++++||++.+.. .+|..+ +.|+|+++...+   .+++++.++- +  +..    
T Consensus         9 aG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~g~~~~~~G~h~f~t~~~---~v~~~~~~~~-~--~~~----   77 (377)
T TIGR00031         9 AGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DETILFHQYGPHIFHTNNQ---YVWDYISPFF-E--LNN----   77 (377)
T ss_pred             CCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CCCceEEeecceeEecCcH---HHHHHHHhhc-c--ccc----
Confidence            4559999987   46999999999999999999987 466554 899999987665   7888888762 1  111    


Q ss_pred             CCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHH---HHhhChHHHHHHHHHhh
Q psy7666         158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFV---SRRFGSEVADYAVSSMI  234 (350)
Q Consensus       158 ~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l---~~~~~~~~~~~~~~pl~  234 (350)
                        ......++.+|+.+++|-.+-.+...............+..........+..++.+|.   .+.||+.+.+.++.|+.
T Consensus        78 --~~~~~~~~~~g~~~~~P~~~~~i~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~e~~d~~~~~~G~~lye~ff~~Yt  155 (377)
T TIGR00031        78 --YQHRVLALYNNLDLTLPFNFNQFRKLLGVKDAQELQNFFNAQFKYGDHVPLEELQEIADPDIQLLYQFLYQKVYKPYT  155 (377)
T ss_pred             --eeEEEEEEECCeEEccCCCHHHHHHhcccchHHHHHHHHHHHhhcccCCCCCCHHHHHHHHHHHHHHHHHHHhccccC
Confidence              1123567889999999876432322111111111222222211110111224566665   88899999999999999


Q ss_pred             hhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHH
Q psy7666         235 CGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGE  314 (350)
Q Consensus       235 ~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~  314 (350)
                      ..+|+.+++++++.++- .+.        + .  + .           .+.. |    ....-+..|++|+.+++++|++
T Consensus       156 ~K~Wg~~p~el~~~~~~-RvP--------~-~--~-~-----------~d~~-y----f~d~~q~~P~~Gyt~~~~~ml~  206 (377)
T TIGR00031       156 VKQWGLPAEEIDPFVIG-RVP--------V-V--L-S-----------EDSS-Y----FPDRYQGLPKGGYTKLFEKMLD  206 (377)
T ss_pred             ceeeCCChHHCCHHHeE-ecc--------e-E--e-c-----------CCCC-c----ccccccccccccHHHHHHHHHh
Confidence            99999999999987752 110        0 0  0 0           0000 0    1111257799999999999998


Q ss_pred             hhcCCCEEEeCcceeEEEEeCCeEEE
Q psy7666         315 HLSNKVEVKMDTTCTNLEFLEKGVKA  340 (350)
Q Consensus       315 ~L~~g~~I~l~~~V~~I~~~~~gv~V  340 (350)
                      +-  +.+|+||+.+..+..++++|.+
T Consensus       207 ~~--~i~v~l~~~~~~~~~~~~~~~~  230 (377)
T TIGR00031       207 HP--LIDVKLNCHINLLKDKDSQLHF  230 (377)
T ss_pred             cC--CCEEEeCCccceeeccccceee
Confidence            74  4789999988888765554544

The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.

>PRK13977 myosin-cross-reactive antigen; Provisional

Probab=99.49  E-value=1.3e-12  Score=131.25  Aligned_cols=210  Identities=19%  Similarity=0.186  Sum_probs=125.3

Q ss_pred             ceeeh----hhHhHhhh---c----CCCCEEEEecCCCCCcceEEEec-CCCeEEecCCceecCCCCCchHHHHHHHHcC
Q psy7666          79 LLLLV----IRILCTVL---R----ISTPITLLESSSRLGGWVRSVQS-PEGLIFEKGPRTIRPKGRLGANTLKLVEDLG  146 (350)
Q Consensus        79 ~~v~v----iaGLaaA~---~----~G~~VtVlEa~drvGGRi~T~~~-~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elG  146 (350)
                      ++++|    |||||||+   +    .|++|+|||+.+++||++.++.. .+|+.+|.|++. ...++   +++++++++.
T Consensus        23 ~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~~~~~Gy~~~~G~~~-~~~y~---~l~~ll~~ip   98 (576)
T PRK13977         23 KKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAGNPEKGYVARGGREM-ENHFE---CLWDLFRSIP   98 (576)
T ss_pred             CeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcccccCCEEEECCCCc-cchHH---HHHHHHHhcc
Confidence            55554    49999996   3    37899999999999999998542 479999999875 55555   8999998874


Q ss_pred             CCC--------cccccCCCCCCCc-ceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHH
Q psy7666         147 LAD--------QVIPITSSHPTAQ-NRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFV  217 (350)
Q Consensus       147 l~~--------~l~~~~~~~p~~~-~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l  217 (350)
                      -.+        +....+..+|... .+++..+|.....+.         -.+.......++..++.+....++.++.||+
T Consensus        99 sle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~~~---------~~L~~k~r~~Ll~l~l~~e~~Ld~~tI~d~f  169 (576)
T PRK13977         99 SLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDTDK---------FGLSKKDRKELLKLLLTPEEKLDDKTIEDWF  169 (576)
T ss_pred             ccCCCCcccccceeeeecCCcccceeeEEcCCCCEEECcC---------CCCCHHHHHHHHHHhccCHHHhCCcCHHHHH
Confidence            211        1111111111110 122222232211110         1233334445555555544568899999999


Q ss_pred             HHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccce
Q psy7666         218 SRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWS  297 (350)
Q Consensus       218 ~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~  297 (350)
                      .++|-...+..++.+++    +-. +..||.-....+..+......+            +                ...+
T Consensus       170 ~~~Ff~t~Fw~~w~t~F----aF~-~whSA~E~rry~~rf~~~~~~l------------~----------------~~s~  216 (576)
T PRK13977        170 SPEFFETNFWYYWRTMF----AFE-KWHSALEMRRYMHRFIHHIGGL------------P----------------DLSG  216 (576)
T ss_pred             hhcCchhHHHHHHHHHH----CCc-hhhHHHHHHHHHHHHHHhhccC------------C----------------cccc
Confidence            99876655556666654    333 5566655433333221110000            0                0001


Q ss_pred             E-EEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEe
Q psy7666         298 V-WSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFL  334 (350)
Q Consensus       298 ~-~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~  334 (350)
                      + +..-.=+++|+..|.+.|. .|++|++|++|++|..+
T Consensus       217 l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~  255 (576)
T PRK13977        217 LKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFD  255 (576)
T ss_pred             ccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEc
Confidence            1 1111225889999999999 99999999999999985

>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G

Probab=99.24  E-value=1.1e-11  Score=90.64  Aligned_cols=62  Identities=27%  Similarity=0.426  Sum_probs=52.4

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDL  145 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~el  145 (350)
                      +.+|||+||+   ++|++|+|||+++++||++.+... +|+.+|.|++++.+..+ ..++.+++++|
T Consensus         4 aG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~d~g~~~~~~~~~-~~~~~~l~~~L   68 (68)
T PF13450_consen    4 AGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFRI-PGYRFDLGAHYFFPPDD-YPNLFRLLREL   68 (68)
T ss_dssp             -SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEEE-TTEEEETSS-SEEETTS-CHHHHHHHHTT
T ss_pred             eCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEEE-CCEEEeeccEEEeCCCC-chHHHHHHcCC
Confidence            6789999998   679999999999999999999995 89999999999976321 34899999875

...

>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]

Probab=99.07  E-value=1.5e-09  Score=100.37  Aligned_cols=211  Identities=14%  Similarity=0.202  Sum_probs=136.5

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecC-CCeEEec-CCceecCCCCCchHHHHHHHHcCCCCcccccCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSP-EGLIFEK-GPRTIRPKGRLGANTLKLVEDLGLADQVIPITS  156 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~-~G~~~D~-Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~  156 (350)
                      |+++|+..|.   ++|++|.|+|+++.+||.+.+.... .|..|-. |||+||..+.   .+++++..+-   ++-+   
T Consensus         9 aGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~---~Vwdyv~~F~---e~~~---   79 (374)
T COG0562           9 AGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNK---RVWDYVNQFT---EFNP---   79 (374)
T ss_pred             CchhHHHHHHHHHHcCCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCch---HHHHHHhhhh---hhhh---
Confidence            5567777766   5799999999999999999998842 5766654 9999998876   9999998762   1111   


Q ss_pred             CCCCCcceEEEeCCeEEECCCChhhhcccCC-CCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHHHHHHhhh
Q psy7666         157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHS-PFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMIC  235 (350)
Q Consensus       157 ~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~-~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~  235 (350)
                         -....+-+.+|..+++|.++-.+-.... ..+......++.+.-......+..++.+=.-+.+|+.+.+.++.++..
T Consensus        80 ---Y~hrVla~~ng~~~~lP~nl~ti~ql~G~~~~p~~a~~~i~~~~~~~~~~~~q~~ee~ais~vg~~LY~~f~kgYT~  156 (374)
T COG0562          80 ---YQHRVLALVNGQLYPLPFNLNTINQLFGKNFTPDEARKFIEEQAAEIDIAEPQNLEEQAISLVGRDLYEAFFKGYTE  156 (374)
T ss_pred             ---hccceeEEECCeeeeccccHHHHHHHhCccCCHHHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhccccH
Confidence               1122355679999999987543322211 222222222222211111223455666666667889999999999999


Q ss_pred             hcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHh
Q psy7666         236 GICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEH  315 (350)
Q Consensus       236 ~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~  315 (350)
                      ..||.+++++.+..+ ..+.        +....     +++      +-.+.|         ..-|++|+-++++.|+++
T Consensus       157 KQWG~~p~eLpasvi-~RvP--------Vr~~~-----dn~------YF~d~y---------QGlP~~GYT~~~~kMl~h  207 (374)
T COG0562         157 KQWGLDPKELPASVI-KRLP--------VRLNF-----DNR------YFSDTY---------QGLPKDGYTAMFEKMLDH  207 (374)
T ss_pred             HHhCCChHHCCHHHh-cccc--------eEEcc-----cCc------ccCccc---------ccCccccHHHHHHHHhcC
Confidence            999999999987543 1110        00000     000      001111         345899999999999986


Q ss_pred             hcCCCEEEeCcceeEEEEeC
Q psy7666         316 LSNKVEVKMDTTCTNLEFLE  335 (350)
Q Consensus       316 L~~g~~I~l~~~V~~I~~~~  335 (350)
                      =  +.+|+||+.-..|....
T Consensus       208 p--~I~V~Lntd~~~~~~~~  225 (374)
T COG0562         208 P--NIDVRLNTDFFDVKDQL  225 (374)
T ss_pred             C--CceEEecCcHHHHhhhh
Confidence            3  47899999888776653

>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function

Probab=98.63  E-value=7e-06  Score=80.94  Aligned_cols=221  Identities=14%  Similarity=0.160  Sum_probs=127.4

Q ss_pred             hHhhh-cCCCCEEEEecCCCCCcceEEEec--------------------CCCeEEecCCceecCCCCCchHHHHHHHHc
Q psy7666          87 LCTVL-RISTPITLLESSSRLGGWVRSVQS--------------------PEGLIFEKGPRTIRPKGRLGANTLKLVEDL  145 (350)
Q Consensus        87 LaaA~-~~G~~VtVlEa~drvGGRi~T~~~--------------------~~G~~~D~Ga~~~~~~~~~~~~l~~l~~el  145 (350)
                      ||+|+ +.|.+|..+++++..||...|...                    ...|.+|+-|..++...    .+.+++-+-
T Consensus        19 la~als~~GkkVLhiD~n~yYGg~~asl~l~~l~~~~~~~~~~~~~~~~~sR~ynIDL~PKll~a~g----~LV~lLi~S   94 (438)
T PF00996_consen   19 LAAALSRSGKKVLHIDRNDYYGGEWASLNLDQLYEWFRPKQWTPPESLGRSRDYNIDLIPKLLYARG----PLVKLLISS   94 (438)
T ss_dssp             HHHHHHHTT--EEEE-SSSSSCGGG-EE-HHHHHHHHCCTCCHHHHHHHTGGGC-EESS--BEETTS----HHHHHHHHC
T ss_pred             HHHHHHhcCCEEEecCCCCCcCCchhcccHHHHHHHhhccccccccccccccceeEecchHhhhccC----HHHHHHHhC
Confidence            34555 789999999999999999999873                    12478999999998775    788999888


Q ss_pred             CCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHH---HHHHHHHhh---c--C--CC--CCCCCcH
Q psy7666         146 GLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPL---IFSILHDLT---T--K--TV--PKSDESI  213 (350)
Q Consensus       146 Gl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~---~~~~l~~~~---~--~--~~--~~~~~Sv  213 (350)
                      |+...+.+.     .-...|+|.+|+++.+|.+-.++++. +.++.-+   +.+++....   .  +  +.  .....++
T Consensus        95 ~V~rYLEFk-----~V~~~~v~~~~~l~kVP~sr~dvf~s-~~lsl~eKR~lmkFl~~v~~~~~~~~~~~~~~~~~~~~~  168 (438)
T PF00996_consen   95 GVTRYLEFK-----AVDGSYVYKNGKLHKVPCSREDVFKS-KLLSLFEKRRLMKFLKFVANYEEDDPSTHKGLDPEKKTF  168 (438)
T ss_dssp             TGGGGSEEE-----EESEEEEEETTEEEE--SSHHHHHC--TTS-HHHHHHHHHHHHHHHHGCTTBGGGSTTG-TTTSBH
T ss_pred             CcccceEEE-----EcceeEEEeCCEEeeCCCCHHHhhcC-CCccHHHHHHHHHHHHHHhhcccCCcchhhccccccccH
Confidence            886544332     11357889999999999987666665 3444323   333333221   1  1  11  2346899


Q ss_pred             HHHHHHh-hChHHHHHHHHHhhhhcccCCcc-cccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhh
Q psy7666         214 YDFVSRR-FGSEVADYAVSSMICGICAGDAK-KISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRS  291 (350)
Q Consensus       214 ~~~l~~~-~~~~~~~~~~~pl~~~~~~~~~~-~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~  291 (350)
                      .+++.+. +.+...+.+...+.  ++..+.. +.++...++.+..+..+.|.                            
T Consensus       169 ~e~~~~f~L~~~~~~~i~haia--L~~~~~~~~~p~~~~l~ri~~yl~Slgr----------------------------  218 (438)
T PF00996_consen  169 QELLKKFGLSENLIDFIGHAIA--LSLDDSYLTEPAREGLERIKLYLSSLGR----------------------------  218 (438)
T ss_dssp             HHHHHHTTS-HHHHHHHHHHTS---SSSSGGGGSBSHHHHHHHHHHHHHHCC----------------------------
T ss_pred             HHHHHhcCCCHHHHHHHHHhhh--hccCcccccccHHHHHHHHHHHHHHHhc----------------------------
Confidence            9999642 44555544433322  2222221 22444555555443221110                            


Q ss_pred             hcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe--EEEEeCCCceec
Q psy7666         292 RIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG--VKAVDQPIHQMT  349 (350)
Q Consensus       292 ~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g--v~V~~~~G~~~~  349 (350)
                       .....+.++..|.+.|++++++.-. -|+...||++|.+|..++++  +.|.. +|++++
T Consensus       219 -yG~sPfLyP~YG~GELpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s-~ge~v~  277 (438)
T PF00996_consen  219 -YGKSPFLYPLYGLGELPQAFCRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKS-EGEVVK  277 (438)
T ss_dssp             -CSSSSEEEETT-TTHHHHHHHHHHHHTT-EEESS--EEEEEEETTTEEEEEEE-TTEEEE
T ss_pred             -cCCCCEEEEccCCccHHHHHHHHhhhcCcEEEeCCccceeeeecCCeEEEEec-CCEEEE
Confidence             1112478899999999999998877 78999999999999996554  33544 776654

This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=98.51  E-value=1.1e-07  Score=86.40  Aligned_cols=61  Identities=23%  Similarity=0.376  Sum_probs=53.6

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLG  146 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elG  146 (350)
                      ++|+||+||+   .+|++|||||++.-+|||+.|.+. +|.++|.|++.|.+..+   .++++++.+.
T Consensus         9 aGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRRl-~~g~~DhGAqYfk~~~~---~F~~~Ve~~~   72 (331)
T COG3380           9 AGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRRL-DGGRFDHGAQYFKPRDE---LFLRAVEALR   72 (331)
T ss_pred             cchHHHHHHHHHHhcCcEEEEEEcCCCcccchheecc-CCccccccceeecCCch---HHHHHHHHHH
Confidence            5679999998   589999999999999999999994 78889999999998876   7887777664

>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis []

Probab=98.21  E-value=1.8e-05  Score=78.11  Aligned_cols=208  Identities=19%  Similarity=0.189  Sum_probs=112.8

Q ss_pred             ehhhHhHhhh---c----CCCCEEEEecCCCCCcceEEEec-CCCeEEecCCceecCCCCCchHHHHHHHHcCCC-----
Q psy7666          82 LVIRILCTVL---R----ISTPITLLESSSRLGGWVRSVQS-PEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLA-----  148 (350)
Q Consensus        82 ~viaGLaaA~---~----~G~~VtVlEa~drvGGRi~T~~~-~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~-----  148 (350)
                      .+||+||||.   +    .|.+++|||+.+..||-+.+.-. ..||.+=-|-. +...+.   .+++|++.+=-.     
T Consensus        10 sGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g~~~~GYv~RgGR~-~~~~~e---clwdLls~IPSle~p~~   85 (500)
T PF06100_consen   10 SGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAGDPENGYVIRGGRM-MEFHYE---CLWDLLSSIPSLEDPGK   85 (500)
T ss_pred             CCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCCCCCCCeeecCCcc-ccchhH---HHHHHHHhCCCCCCCCC
Confidence            5689999986   2    48999999999999999988653 35765544433 334443   777777765310     


Q ss_pred             ---CcccccCCCCCCCc-ceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhh-Ch
Q psy7666         149 ---DQVIPITSSHPTAQ-NRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRF-GS  223 (350)
Q Consensus       149 ---~~l~~~~~~~p~~~-~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~-~~  223 (350)
                         +++...+...|... .+++..+|+.......        -.|+..+...+++-++.+...+++.++.||+...| ..
T Consensus        86 SVlDe~~~~n~~~p~~s~~Rli~~~G~~~~~~~~--------~~Ls~k~r~eL~kL~l~~E~~L~~~~I~d~F~~~FF~S  157 (500)
T PF06100_consen   86 SVLDEIYWFNKEDPNYSKARLIDKRGQIVDTDSK--------FGLSEKDRMELIKLLLTPEEDLGDKRIEDWFSESFFES  157 (500)
T ss_pred             cHHHHHHHhccCCCCCcceeeeccCCccccccCc--------CCCCHHHHHHHHHHhcCCHHHhCcccHHHhcchhhhcC
Confidence               11111111223222 2333334442211110        12344445555555555555678889999988763 33


Q ss_pred             HHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecC
Q psy7666         224 EVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEG  303 (350)
Q Consensus       224 ~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~G  303 (350)
                      .++ .+|..    .++-.+.. |+.-.-..+.++......+            +.              . ..-.++.-.
T Consensus       158 nFW-~~W~T----~FAFqpWh-Sa~E~rRyl~Rf~h~~~~l------------~~--------------l-~~l~~T~YN  204 (500)
T PF06100_consen  158 NFW-YMWST----MFAFQPWH-SAVEFRRYLHRFIHEIPGL------------ND--------------L-SGLDRTKYN  204 (500)
T ss_pred             chh-HhHHH----hhccCcch-hHHHHHHHHHHHHHhcCCC------------CC--------------c-cccccCccc
Confidence            333 23333    33444333 2211111111111111000            00              0 000111223


Q ss_pred             cHHHHHHHHHHhhc-CCCEEEeCcceeEEEEe
Q psy7666         304 GLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFL  334 (350)
Q Consensus       304 G~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~  334 (350)
                      =+++|+..|.+.|. +||++++|+.|+.|..+
T Consensus       205 QyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~  236 (500)
T PF06100_consen  205 QYESIILPLIRYLKSQGVDFRFNTKVTDIDFD  236 (500)
T ss_pred             cHHHHHHHHHHHHHHCCCEEECCCEEEEEEEE
Confidence            37899999999999 99999999999999986

>KOG4254|consensus

Probab=98.11  E-value=6.1e-05  Score=73.11  Aligned_cols=55  Identities=13%  Similarity=0.033  Sum_probs=49.5

Q ss_pred             cceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666         295 KWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT  349 (350)
Q Consensus       295 ~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~  349 (350)
                      ..++.|+.|||+.+.+++++.+. .|++|.+++.|++|.-+++. +-|..+||+++.
T Consensus       253 ~g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~  309 (561)
T KOG4254|consen  253 KGGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVR  309 (561)
T ss_pred             CCcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEE
Confidence            45789999999999999999999 99999999999999998765 678999998874

>KOG1439|consensus

Probab=97.94  E-value=0.00012  Score=70.20  Aligned_cols=222  Identities=11%  Similarity=0.131  Sum_probs=129.3

Q ss_pred             Hhhh-cCCCCEEEEecCCCCCcceEEEec-------C-------------CCeEEecCCceecCCCCCchHHHHHHHHcC
Q psy7666          88 CTVL-RISTPITLLESSSRLGGWVRSVQS-------P-------------EGLIFEKGPRTIRPKGRLGANTLKLVEDLG  146 (350)
Q Consensus        88 aaA~-~~G~~VtVlEa~drvGGRi~T~~~-------~-------------~G~~~D~Ga~~~~~~~~~~~~l~~l~~elG  146 (350)
                      ++++ ..|.+|..+++++..||-..|...       .             ..+.+|+=|..++...    .+..++-+-|
T Consensus        20 S~~Ls~~gkkVLhiDrN~yYG~~sasltl~ql~~~f~~~~~~~~~~~~~~rd~nvDLiPK~lmAn~----~Lvk~Li~T~   95 (440)
T KOG1439|consen   20 SGALSVDGKKVLHIDRNDYYGGESASLTLEQLYKKFKKVSEKPPEKLGRDRDWNVDLIPKFLMANG----ELVKILIHTG   95 (440)
T ss_pred             eeeeeecCcEEEEEeCCCCCCccccceeHHHHHHHhccccccCccccccccccchhhchHhhhccc----hHHHHHHHhc
Confidence            4444 579999999999999998888753       0             1356777777776654    5777777778


Q ss_pred             CCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhccc--CCCCCHHHHHHHHHH---hhc----CCCC--CCCCcHHH
Q psy7666         147 LADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKT--HSPFSKPLIFSILHD---LTT----KTVP--KSDESIYD  215 (350)
Q Consensus       147 l~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~--~~~l~~~~~~~~l~~---~~~----~~~~--~~~~Sv~~  215 (350)
                      +...+...     .....++|.+|+.+.+|..-..+++.  +.++.++.+.+++.-   +..    .+..  ....++.+
T Consensus        96 V~~YL~fk-----~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~~~~~~~k~tm~~  170 (440)
T KOG1439|consen   96 VTRYLEFK-----SISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTWQGYDLSKDTMRE  170 (440)
T ss_pred             hhhheEEE-----eecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccccccccccchHHH
Confidence            75533332     12457889999999999876555543  122233433443332   111    1111  22347888


Q ss_pred             HHHHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcc
Q psy7666         216 FVSRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIE  294 (350)
Q Consensus       216 ~l~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~  294 (350)
                      ++.+- ......+.. ...+......+.-+..+.-.+..+..+..+   +  +.                   |     .
T Consensus       171 ~~~~~~l~~~~~~f~-gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S---~--~~-------------------y-----g  220 (440)
T KOG1439|consen  171 FLGKFGLLEGTIDFI-GHAIALLCDDSYLDQPAKETLERILLYVRS---F--AR-------------------Y-----G  220 (440)
T ss_pred             HHHHhcccccceeee-eeeeEEEecchhccCccHHHHHHHHHHHHH---H--hh-------------------c-----C
Confidence            88653 223333221 111222222222222333333333322211   0  00                   0     1


Q ss_pred             cceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666         295 KWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM  348 (350)
Q Consensus       295 ~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~  348 (350)
                      .....++..|++.|++..++.-. -|++..||+|+..|....++..+...+|...
T Consensus       221 ~~~ylyP~yGlgEL~QgFaRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v  275 (440)
T KOG1439|consen  221 KSPYLYPLYGLGELPQGFARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEV  275 (440)
T ss_pred             CCcceecccCcchhhHHHHHHhhccCceeecCCceeeeeccCCccEEEEecCCce
Confidence            11257799999999999998776 8999999999999999655655555555443

>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.11  E-value=0.016  Score=55.38  Aligned_cols=210  Identities=14%  Similarity=0.202  Sum_probs=127.4

Q ss_pred             hHhHhhh-cCCCCEEEEecCCCCCcceEEEec-------------------CCCeEEecCCceecCCCCCchHHHHHHHH
Q psy7666          85 RILCTVL-RISTPITLLESSSRLGGWVRSVQS-------------------PEGLIFEKGPRTIRPKGRLGANTLKLVED  144 (350)
Q Consensus        85 aGLaaA~-~~G~~VtVlEa~drvGGRi~T~~~-------------------~~G~~~D~Ga~~~~~~~~~~~~l~~l~~e  144 (350)
                      +=|+||+ -+|.+|.+++++|..|+-..|...                   ...+.+|+=|..|....    .+..++-+
T Consensus        19 sils~~Ls~~~k~VlhiD~Nd~YG~~~asltl~ql~~~~~~~~~~p~k~~~drd~~iDL~PK~l~A~s----~l~~iLi~   94 (434)
T COG5044          19 SILSAALSWDGKNVLHIDKNDYYGSTSASLTLTQLEKYFDECEKRPSKGGGDRDLNIDLIPKFLFANS----ELLKILIE   94 (434)
T ss_pred             HHHHHHhhhcCceEEEEeCCCccCccccceeHHHHHHHhhhhhccccccccccccchhhchhhhcccc----hHHHHHHH
Confidence            5566676 479999999999999999888763                   01256777788776654    68888888


Q ss_pred             cCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhccc--CCCCCHHHHHHHHHH---hhc---CCCC-CCCCcHHH
Q psy7666         145 LGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKT--HSPFSKPLIFSILHD---LTT---KTVP-KSDESIYD  215 (350)
Q Consensus       145 lGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~--~~~l~~~~~~~~l~~---~~~---~~~~-~~~~Sv~~  215 (350)
                      -|+..-+...     ...+.++|.+|+.+.+|..-..++..  +.++.++...+++.-   +..   .+.. ..+.+..+
T Consensus        95 t~v~~YLefk-----~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~~~~~~~~~~e~k~~~~  169 (434)
T COG5044          95 TGVTEYLEFK-----QISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAEQKSTLQELYESKDTME  169 (434)
T ss_pred             hChHhheeee-----eccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHhhhhhchhhhhcccHHH
Confidence            8886533332     12357888899999999875555543  122333433444321   111   1111 22355778


Q ss_pred             HHHHhhC--hHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhc
Q psy7666         216 FVSRRFG--SEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRI  293 (350)
Q Consensus       216 ~l~~~~~--~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~  293 (350)
                      ++.+.|+  ....+.+...++-..   + -+..++-++..+..+.++++     ..    +                   
T Consensus       170 ~~~ekf~L~~~~~e~i~~~i~l~l---d-l~~p~re~~erIl~Y~~Sf~-----~y----g-------------------  217 (434)
T COG5044         170 FLFEKFGLSGATEEFIGHGIALSL---D-LDIPAREALERILRYMRSFG-----DY----G-------------------  217 (434)
T ss_pred             HHHHHHccCcchhhhhhhhhhhhc---c-ccCCchHHHHHHHHHHHhhc-----cc----C-------------------
Confidence            8877766  222222222222111   1 23334444444443322211     10    1                   


Q ss_pred             ccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC
Q psy7666         294 EKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK  336 (350)
Q Consensus       294 ~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~  336 (350)
                       .....++.-|++.|.+..++.-. .|++..||+++..|.....
T Consensus       218 -~~pyLyp~YGl~El~QGFaRssav~GgtymLn~~i~ein~tk~  260 (434)
T COG5044         218 -KSPYLYPRYGLGELSQGFARSSAVYGGTYMLNQAIDEINETKD  260 (434)
T ss_pred             -CCcceeeccCchhhhHHHHHhhhccCceeecCcchhhhccccc
Confidence             11356788889999999998877 8999999999999977655

>COG4716 Myosin-crossreactive antigen [Function unknown]

Probab=97.01  E-value=0.009  Score=57.19  Aligned_cols=210  Identities=18%  Similarity=0.202  Sum_probs=111.8

Q ss_pred             ehhhHhHhhh-------cCCCCEEEEecCCCCCcceEEEec-CCCeEEecCCceecCCCCCchHHHHHHHHcC---CCC-
Q psy7666          82 LVIRILCTVL-------RISTPITLLESSSRLGGWVRSVQS-PEGLIFEKGPRTIRPKGRLGANTLKLVEDLG---LAD-  149 (350)
Q Consensus        82 ~viaGLaaA~-------~~G~~VtVlEa~drvGGRi~T~~~-~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elG---l~~-  149 (350)
                      +++||||+|.       -.|-++.++|.-.-.||-...... ..||++- |+.-+-....   .+++|++.+-   ++. 
T Consensus        30 ~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~~~p~~GfV~R-GGRemEnhfE---c~WDlfrsIPSLei~na  105 (587)
T COG4716          30 GGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGAGSPHHGFVVR-GGREMENHFE---CLWDLFRSIPSLEIPNA  105 (587)
T ss_pred             cchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCCCCcccceeec-CcHHHHHHHH---HHHHHHhcCccccCCCc
Confidence            4569999996       258999999999999998655431 2566554 3333333343   6788887642   221 


Q ss_pred             ----cccccCCCCCCCcce-EEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChH
Q psy7666         150 ----QVIPITSSHPTAQNR-LIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSE  224 (350)
Q Consensus       150 ----~l~~~~~~~p~~~~~-~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~  224 (350)
                          ++.+.+..+|...+. .+..+|+... ..+-.       .+.......++.-+..+....++.++.||+..+|-.+
T Consensus       106 SvldEfy~~d~~dPn~s~cRli~k~g~rv~-ddg~~-------tl~~~~~~ei~kL~~t~EE~L~~~tI~d~Fse~FF~s  177 (587)
T COG4716         106 SVLDEFYWLDKDDPNSSNCRLIHKRGRRVD-DDGSF-------TLNNKARKEIIKLLMTPEEKLDDLTIEDWFSEDFFKS  177 (587)
T ss_pred             HHHHHHHhccCCCCCccceeeeeccccccc-ccccc-------ccChhhHHHHHHHHcCcHHhcCCccHHHhhhHhhhhh
Confidence                344444455554433 3334444211 11100       1222222333333334445688999999999875433


Q ss_pred             HHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCc
Q psy7666         225 VADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGG  304 (350)
Q Consensus       225 ~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG  304 (350)
                      -+=.||..+++-    .... |+ .-+.....         + ++.+ +..-+      +        ..+ --++.-.-
T Consensus       178 NFW~yW~tmFAF----ekWh-Sa-~EmRRY~m---------R-fihh-i~gl~------d--------fs~-lkftkyNQ  225 (587)
T COG4716         178 NFWYYWQTMFAF----EKWH-SA-FEMRRYMM---------R-FIHH-ISGLP------D--------FSA-LKFTKYNQ  225 (587)
T ss_pred             hHHHHHHHHHhh----hHHH-HH-HHHHHHHH---------H-HHHH-hcCCC------c--------chh-hcccccch
Confidence            332455543321    1110 11 11111100         0 0000 00000      0        000 01334456


Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeC
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLE  335 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~  335 (350)
                      +++|+..|..-|. .|+.+.+++.|+.|..+.
T Consensus       226 YeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~  257 (587)
T COG4716         226 YESLVLPLITYLKSHGVDFTYDQKVEDIDVDD  257 (587)
T ss_pred             HHHHHHHHHHHHHHcCCceEeccEEeeeeecc
Confidence            8999999999999 899999999999998763

>KOG0399|consensus

Probab=96.36  E-value=0.0028  Score=67.77  Aligned_cols=35  Identities=23%  Similarity=0.267  Sum_probs=31.0

Q ss_pred             Cceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          78 LLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        78 ~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      -++||||    |||+||-   ++||-|+|||++||+||..+-
T Consensus      1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~y 1826 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLMY 1826 (2142)
T ss_pred             CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceeee
Confidence            4789999    9999996   689999999999999998753

>PLN02172 flavin-containing monooxygenase FMO GS-OX

Probab=96.28  E-value=0.0036  Score=62.78  Aligned_cols=34  Identities=21%  Similarity=0.237  Sum_probs=29.2

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      ++||||    |||+||.   +.|++|+|||+++.+||...-
T Consensus        11 ~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~   51 (461)
T PLN02172         11 QHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY   51 (461)
T ss_pred             CCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence            567776    9999986   679999999999999998754

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=96.10  E-value=0.004  Score=67.62  Aligned_cols=34  Identities=26%  Similarity=0.327  Sum_probs=30.6

Q ss_pred             Cceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          78 LLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        78 ~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      -++||||    |||+||+   ++|++|||||+.+++||.++
T Consensus       306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~  346 (944)
T PRK12779        306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR  346 (944)
T ss_pred             CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence            3779988    9999998   68999999999999999875

>PLN02852 ferredoxin-NADP+ reductase

Probab=95.95  E-value=0.0084  Score=60.43  Aligned_cols=34  Identities=24%  Similarity=0.216  Sum_probs=29.7

Q ss_pred             ceeehh----hHhHhhh---c--CCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---R--ISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~--~G~~VtVlEa~drvGGRi~T  112 (350)
                      ++||||    |||+||.   +  .|++|+|||+.+.+||.++.
T Consensus        27 ~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~   69 (491)
T PLN02852         27 LHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS   69 (491)
T ss_pred             CcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence            678888    9999996   2  59999999999999998874

>KOG1399|consensus

Probab=95.89  E-value=0.0066  Score=60.39  Aligned_cols=35  Identities=20%  Similarity=0.258  Sum_probs=29.5

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV  113 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~  113 (350)
                      ++||||    |||+||.   +.|++|+|||+++.+||..+--
T Consensus         7 ~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~   48 (448)
T KOG1399|consen    7 KDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT   48 (448)
T ss_pred             CceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence            456655    9999987   6799999999999999987654

>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1

Probab=95.85  E-value=0.022  Score=55.39  Aligned_cols=94  Identities=18%  Similarity=0.238  Sum_probs=67.6

Q ss_pred             CCcHHHHHHHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHH
Q psy7666         210 DESIYDFVSRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELY  288 (350)
Q Consensus       210 ~~Sv~~~l~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y  288 (350)
                      ..|..+||.++ ++..+.+.++.+.++..||.+. ++++.                 .|+. .+ ..             
T Consensus        69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRvNYgQ~~-~i~a~-----------------~G~v-Sl-a~-------------  115 (368)
T PF07156_consen   69 KVTGEEYLKENGISERFINELVQAATRVNYGQNV-NIHAF-----------------AGLV-SL-AG-------------  115 (368)
T ss_pred             HHHHHHHHHHCCCCHHHHHHHHHhheEeeccccc-chhhh-----------------hhhe-ee-ee-------------
Confidence            45789999875 7899999999999999999863 34321                 1222 11 00             


Q ss_pred             HhhhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEE-EEeCCe---EEEEeCC
Q psy7666         289 RRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNL-EFLEKG---VKAVDQP  344 (350)
Q Consensus       289 ~~~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I-~~~~~g---v~V~~~~  344 (350)
                           ...+.+.++||..+|++.|.+.-  |.+| ++++|++| ...+++   +.|++.+
T Consensus       116 -----a~~gl~sV~GGN~qI~~~ll~~S--~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~  167 (368)
T PF07156_consen  116 -----ATGGLWSVEGGNWQIFEGLLEAS--GANV-LNTTVTSITRRSSDGYSLYEVTYKS  167 (368)
T ss_pred             -----ccCCceEecCCHHHHHHHHHHHc--cCcE-ecceeEEEEeccCCCceeEEEEEec
Confidence                 02357899999999999999985  5899 99999999 444443   5666554

8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process

>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]

Probab=95.77  E-value=0.0078  Score=60.07  Aligned_cols=35  Identities=23%  Similarity=0.152  Sum_probs=31.9

Q ss_pred             Cceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          78 LLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        78 ~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      -++||||    |||+||.   ++|++|||+|+.++.||++.-
T Consensus       123 g~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y  164 (457)
T COG0493         123 GKKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY  164 (457)
T ss_pred             CCEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence            3789999    9999998   689999999999999999875

>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []

Probab=95.66  E-value=0.0069  Score=61.75  Aligned_cols=33  Identities=27%  Similarity=0.284  Sum_probs=27.4

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      |+||||    |||+||.   +.|++|++||+++.+||-.+
T Consensus         2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~   41 (531)
T PF00743_consen    2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWR   41 (531)
T ss_dssp             -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGC
T ss_pred             CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCe
Confidence            567776    9999986   68999999999999999875

Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....

>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit

Probab=95.00  E-value=0.02  Score=62.26  Aligned_cols=35  Identities=29%  Similarity=0.443  Sum_probs=30.6

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV  113 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~  113 (350)
                      ++||||    |||+||+   +.|++|+|+|+.+.+||.++..
T Consensus       538 kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~~~  579 (1012)
T TIGR03315       538 HKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVKNI  579 (1012)
T ss_pred             CcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceeeec
Confidence            568887    9999998   6799999999999999998643

Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.

>PTZ00188 adrenodoxin reductase; Provisional

Probab=95.00  E-value=0.024  Score=56.90  Aligned_cols=36  Identities=14%  Similarity=0.109  Sum_probs=31.2

Q ss_pred             Cceeehh----hHhHhhh----cCCCCEEEEecCCCCCcceEEE
Q psy7666          78 LLLLLVI----RILCTVL----RISTPITLLESSSRLGGWVRSV  113 (350)
Q Consensus        78 ~~~v~vi----aGLaaA~----~~G~~VtVlEa~drvGGRi~T~  113 (350)
                      .++||||    |||.||.    +.|++|+|||+.+++||.++.-
T Consensus        39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~G   82 (506)
T PTZ00188         39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRYG   82 (506)
T ss_pred             CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEEe
Confidence            3679888    9999976    3599999999999999999864

>PRK12831 putative oxidoreductase; Provisional

Probab=94.91  E-value=0.025  Score=56.78  Aligned_cols=35  Identities=20%  Similarity=0.171  Sum_probs=29.8

Q ss_pred             CCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          77 DLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        77 ~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ..++|+||    |||+||+   +.|++|+|+|+.+.+||.+.
T Consensus       139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  180 (464)
T PRK12831        139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV  180 (464)
T ss_pred             CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence            33678887    8999997   57999999999999999874

>PRK09853 putative selenate reductase subunit YgfK; Provisional

Probab=94.38  E-value=0.032  Score=60.64  Aligned_cols=35  Identities=29%  Similarity=0.413  Sum_probs=30.6

Q ss_pred             Cceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          78 LLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        78 ~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .++|+||    |||+||+   +.|++|+|+|+.+++||.++.
T Consensus       539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr~  580 (1019)
T PRK09853        539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVKN  580 (1019)
T ss_pred             CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCcceee
Confidence            3678887    9999997   679999999999999999864

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=94.31  E-value=0.037  Score=60.76  Aligned_cols=34  Identities=15%  Similarity=0.181  Sum_probs=29.9

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      ++||||    |||+||.   ++|++|+|||+.+.+||.++.
T Consensus       431 ~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~~  471 (1006)
T PRK12775        431 GKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQY  471 (1006)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceeec
Confidence            678888    9999997   679999999999999998653

>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]

Probab=94.27  E-value=0.028  Score=50.21  Aligned_cols=53  Identities=15%  Similarity=0.384  Sum_probs=38.5

Q ss_pred             hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCC
Q psy7666          85 RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLAD  149 (350)
Q Consensus        85 aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~  149 (350)
                      |||+||+   ++|.+|+|+|++..+||=++-    +|+.|.    -+--..    +..++++|+|++.
T Consensus        41 sGLtAAyyLAk~g~kV~i~E~~ls~GGG~w~----GGmlf~----~iVv~~----~a~~iL~e~gI~y   96 (262)
T COG1635          41 SGLTAAYYLAKAGLKVAIFERKLSFGGGIWG----GGMLFN----KIVVRE----EADEILDEFGIRY   96 (262)
T ss_pred             chHHHHHHHHhCCceEEEEEeecccCCcccc----cccccc----eeeecc----hHHHHHHHhCCcc
Confidence            9999998   689999999999999987542    343221    111122    6789999999965

>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=94.16  E-value=0.089  Score=51.56  Aligned_cols=53  Identities=17%  Similarity=0.205  Sum_probs=34.3

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCc-eecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPR-TIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~-~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++++||++|.   ++|++|+|+|+++...-.      .      .|.. .+.   +   +..++++++|+.+++.
T Consensus        26 aG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~------~------~g~~~~l~---~---~~~~~L~~lGl~~~l~   82 (415)
T PRK07364         26 GGIVGLTLAAALKDSGLRIALIEAQPAEAAA------A------KGQAYALS---L---LSARIFEGIGVWEKIL   82 (415)
T ss_pred             cCHHHHHHHHHHhcCCCEEEEEecCCccccC------C------CCcEEEec---h---HHHHHHHHCChhhhhH
Confidence            3459999997   679999999998764210      0      1111 121   1   4578888999866544

>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.11  E-value=0.046  Score=57.33  Aligned_cols=34  Identities=18%  Similarity=0.253  Sum_probs=29.5

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      ++|+||    |||+||.   +.|++|+|+|+.+.+||.+..
T Consensus       328 ~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~~  368 (654)
T PRK12769        328 KRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLTF  368 (654)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceeee
Confidence            678887    9999997   679999999999999998653

>PLN02661 Putative thiazole synthesis

Probab=94.04  E-value=0.086  Score=50.81  Aligned_cols=54  Identities=17%  Similarity=0.277  Sum_probs=34.7

Q ss_pred             hhhHhHhhh---cC-CCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCC
Q psy7666          83 VIRILCTVL---RI-STPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLA  148 (350)
Q Consensus        83 viaGLaaA~---~~-G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~  148 (350)
                      +++||+||+   +. |++|+|+|+...+||....    +|..+.   .++ -..    ...++++++|++
T Consensus       101 G~AGl~AA~~La~~~g~kV~viEk~~~~GGG~~~----gg~l~~---~~v-v~~----~a~e~LeElGV~  158 (357)
T PLN02661        101 GSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWL----GGQLFS---AMV-VRK----PAHLFLDELGVP  158 (357)
T ss_pred             HHHHHHHHHHHHHcCCCeEEEEecCcccccceee----Cccccc---ccc-ccc----HHHHHHHHcCCC
Confidence            349999998   33 8999999999999885441    222111   111 111    456778888885

>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed

Probab=94.00  E-value=0.051  Score=56.80  Aligned_cols=33  Identities=18%  Similarity=0.267  Sum_probs=29.0

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    +||+||.   +.|++|+|||+.+++||.++
T Consensus       311 kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~  350 (639)
T PRK12809        311 EKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT  350 (639)
T ss_pred             CEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence            678877    9999987   57999999999999999865

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=93.99  E-value=0.12  Score=50.05  Aligned_cols=52  Identities=13%  Similarity=0.187  Sum_probs=45.6

Q ss_pred             EEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         298 VWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       298 ~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +|......+.|+++|.+.+. .|++|+++++|.+|..++.+..|++.+|++++
T Consensus       103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~~f~l~t~~g~~i~  155 (408)
T COG2081         103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDSGFRLDTSSGETVK  155 (408)
T ss_pred             ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCceEEEEcCCCCEEE
Confidence            44333778899999999999 99999999999999999989999999997654

>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric

Probab=93.82  E-value=0.063  Score=53.62  Aligned_cols=33  Identities=24%  Similarity=0.295  Sum_probs=28.6

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    |||+||.   +.|++|+|+|+.+++||.+.
T Consensus       134 ~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l~  173 (449)
T TIGR01316       134 KKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVVT  173 (449)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEee
Confidence            668777    9999987   57999999999999999764

This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.

>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K

Probab=93.81  E-value=0.026  Score=50.41  Aligned_cols=53  Identities=15%  Similarity=0.374  Sum_probs=32.5

Q ss_pred             hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCC
Q psy7666          85 RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLAD  149 (350)
Q Consensus        85 aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~  149 (350)
                      |||+||+   ++|.+|.|+|++..+||.++.    +|..|.   .+. -..    +...+++|+|++.
T Consensus        28 aGl~aA~~La~~g~kV~v~E~~~~~GGg~~~----Gg~lf~---~iV-Vq~----~a~~iL~elgi~y   83 (230)
T PF01946_consen   28 AGLTAAYYLAKAGLKVAVIERKLSPGGGMWG----GGMLFN---KIV-VQE----EADEILDELGIPY   83 (230)
T ss_dssp             HHHHHHHHHHHHTS-EEEEESSSS-BTTTTS-----CTT------EE-EET----TTHHHHHHHT---
T ss_pred             hHHHHHHHHHHCCCeEEEEecCCCCCccccc----cccccc---hhh-hhh----hHHHHHHhCCcee
Confidence            9999998   579999999999999998542    333332   111 112    3568889999854

>PRK12810 gltD glutamate synthase subunit beta; Reviewed

Probab=93.69  E-value=0.067  Score=53.78  Aligned_cols=33  Identities=27%  Similarity=0.438  Sum_probs=28.6

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    |||+||.   ++|++|+|+|+.+++||.++
T Consensus       144 ~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~  183 (471)
T PRK12810        144 KKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR  183 (471)
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence            567777    9999987   67999999999999999764

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=93.64  E-value=0.068  Score=56.02  Aligned_cols=33  Identities=21%  Similarity=0.392  Sum_probs=28.9

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    |||+||.   +.|++|+|+|+.+++||.++
T Consensus       194 k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~  233 (652)
T PRK12814        194 KKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR  233 (652)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence            678777    9999997   57999999999999999864

>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]

Probab=93.59  E-value=0.17  Score=37.57  Aligned_cols=38  Identities=26%  Similarity=0.229  Sum_probs=32.0

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      +.+.+.+.+. .|++|++++.|++|..++++++|+..||
T Consensus        42 ~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~V~~~~g   80 (80)
T PF00070_consen   42 AAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVEVTLEDG   80 (80)
T ss_dssp             HHHHHHHHHHHTTEEEEESEEEEEEEEETTSEEEEEETS
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEEecC
Confidence            5556666666 7899999999999999988888888886

Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=93.58  E-value=0.066  Score=57.05  Aligned_cols=33  Identities=21%  Similarity=0.249  Sum_probs=29.1

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    |||+||+   ++|++|+|+|+.+.+||.+.
T Consensus       432 ~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~  471 (752)
T PRK12778        432 KKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK  471 (752)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            678887    9999997   67999999999999999865

>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]

Probab=93.38  E-value=0.077  Score=52.97  Aligned_cols=43  Identities=21%  Similarity=0.332  Sum_probs=32.4

Q ss_pred             ceeehh----hHhHhhh---cCCCC-EEEEecCCCCCcceEEEecCCCeEEe
Q psy7666          79 LLLLVI----RILCTVL---RISTP-ITLLESSSRLGGWVRSVQSPEGLIFE  122 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~-VtVlEa~drvGGRi~T~~~~~G~~~D  122 (350)
                      .+|+||    |||++|+   ++|.. ++||||++++||--+..++ .+.+.|
T Consensus         9 ~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~ry-~~l~~~   59 (443)
T COG2072           9 TDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNRY-PGLRLD   59 (443)
T ss_pred             ccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhccC-CceEEC
Confidence            456666    9999987   57888 9999999999998666443 344333

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=93.15  E-value=0.17  Score=47.73  Aligned_cols=50  Identities=20%  Similarity=0.282  Sum_probs=44.2

Q ss_pred             eEEEecCc---HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEE-EEeCCCc
Q psy7666         297 SVWSVEGG---LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVK-AVDQPIH  346 (350)
Q Consensus       297 ~~~~~~GG---~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~-V~~~~G~  346 (350)
                      .++.+.+|   ...++++|.+.+. .|++|+++++|++|..++++|. |.+.+|+
T Consensus       135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~  189 (358)
T PF01266_consen  135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGE  189 (358)
T ss_dssp             EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEE
T ss_pred             hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccc
Confidence            46667788   8889999999998 8999999999999999999998 9999987

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=92.94  E-value=0.075  Score=46.44  Aligned_cols=33  Identities=21%  Similarity=0.151  Sum_probs=25.5

Q ss_pred             ehhhHhHhhh---cCCCC-EEEEecCCCCCcceEEEe
Q psy7666          82 LVIRILCTVL---RISTP-ITLLESSSRLGGWVRSVQ  114 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~-VtVlEa~drvGGRi~T~~  114 (350)
                      |+.|||++|.   +.|.+ |+|||+++++||......
T Consensus         5 aG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~~   41 (203)
T PF13738_consen    5 AGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRYY   41 (203)
T ss_dssp             -SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH-
T ss_pred             cCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEeC
Confidence            5669999987   67999 999999999999987543

...

>PRK08132 FAD-dependent oxidoreductase; Provisional

Probab=92.92  E-value=0.2  Score=51.31  Aligned_cols=50  Identities=16%  Similarity=0.343  Sum_probs=34.4

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCC--cceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLG--GWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvG--GRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++++||++|.   +.|++|+|+|+++.+.  +|...               +   .+   +.+++++++|+.+++.
T Consensus        31 aGpaGl~lA~~L~~~G~~v~viE~~~~~~~~~ra~~---------------l---~~---~~~~~l~~lGl~~~l~   85 (547)
T PRK08132         31 AGPVGLALAIDLAQQGVPVVLLDDDDTLSTGSRAIC---------------F---AK---RSLEIFDRLGCGERMV   85 (547)
T ss_pred             CCHHHHHHHHHHHhCCCcEEEEeCCCCCCCCCeEEE---------------E---cH---HHHHHHHHcCCcHHHH
Confidence            3449999987   6799999999997542  22211               1   11   5678889999876543

>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated

Probab=92.83  E-value=0.086  Score=56.99  Aligned_cols=34  Identities=15%  Similarity=-0.009  Sum_probs=28.6

Q ss_pred             CCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          76 PDLLLLLVI----RILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        76 ~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      +..++|+||    |||+||+   +.||+|||+|+.+..|+-
T Consensus       381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~  421 (1028)
T PRK06567        381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP  421 (1028)
T ss_pred             CCCCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence            344779888    9999998   579999999999887775

>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional

Probab=92.82  E-value=0.098  Score=52.32  Aligned_cols=33  Identities=27%  Similarity=0.378  Sum_probs=28.2

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    |||+||.   +.|++|+|+|+.+++||.+.
T Consensus       141 ~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l~  180 (457)
T PRK11749        141 KKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLLR  180 (457)
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEee
Confidence            667777    8999987   57999999999999999754

>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]

Probab=92.80  E-value=0.07  Score=52.86  Aligned_cols=32  Identities=16%  Similarity=0.320  Sum_probs=28.2

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEe
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQ  114 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~  114 (350)
                      ++|||+||+   +.|++|.|+|+...+|||+..+.
T Consensus       133 GvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~  167 (622)
T COG1148         133 GVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN  167 (622)
T ss_pred             cHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence            459999998   57999999999999999987654

>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial

Probab=92.79  E-value=0.1  Score=52.36  Aligned_cols=33  Identities=18%  Similarity=0.302  Sum_probs=28.7

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    +||+||.   +.|++|+|+|+.+++||.++
T Consensus       142 ~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~  181 (467)
T TIGR01318       142 KRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT  181 (467)
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            567777    9999987   57999999999999999765

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.

>TIGR03219 salicylate_mono salicylate 1-monooxygenase

Probab=92.76  E-value=0.14  Score=50.42  Aligned_cols=50  Identities=24%  Similarity=0.321  Sum_probs=32.7

Q ss_pred             ehhhHhHhhh---cCC-CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCc
Q psy7666          82 LVIRILCTVL---RIS-TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ  150 (350)
Q Consensus        82 ~viaGLaaA~---~~G-~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~  150 (350)
                      +.|+||++|+   ++| .+|+|||+++.++.        .|.-+.+        .+   +..++++++|+.+.
T Consensus         8 gGiaGla~A~~L~~~g~~~v~v~Er~~~~~~--------~G~gi~l--------~~---~~~~~L~~lg~~~~   61 (414)
T TIGR03219         8 GGIAGVALALNLCKHSHLNVQLFEAAPAFGE--------VGAGVSF--------GA---NAVRAIVGLGLGEA   61 (414)
T ss_pred             CCHHHHHHHHHHHhcCCCCEEEEecCCcCCC--------Cccceee--------Cc---cHHHHHHHcCChhH
Confidence            3459999997   467 59999999876431        1222221        12   46788888888654

Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.

>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated

Probab=92.68  E-value=0.31  Score=47.55  Aligned_cols=53  Identities=17%  Similarity=0.127  Sum_probs=36.7

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCC--CcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRL--GGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIP  153 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drv--GGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~  153 (350)
                      ++++||++|+   ++|++|+|+|++++.  .+             +.++..+.+      +.+++++++|+.+++..
T Consensus        10 aGpaGl~~A~~L~~~G~~v~v~E~~~~~~~~~-------------~~~a~~l~~------~~~~~l~~lGl~~~l~~   67 (392)
T PRK08243         10 AGPAGLLLGQLLHLAGIDSVVLERRSREYVEG-------------RIRAGVLEQ------GTVDLLREAGVGERMDR   67 (392)
T ss_pred             CCHHHHHHHHHHHhcCCCEEEEEcCCcccccc-------------ccceeEECH------hHHHHHHHcCChHHHHh
Confidence            4459999997   679999999998752  11             123333432      46799999999765543

>TIGR00292 thiazole biosynthesis enzyme

Probab=92.43  E-value=0.098  Score=48.21  Aligned_cols=27  Identities=22%  Similarity=0.209  Sum_probs=23.9

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      .|||+||+   ++|.+|+|+|+.+.+||-+
T Consensus        31 pAGL~aA~~la~~G~~V~vlEk~~~~Ggg~   60 (254)
T TIGR00292        31 PSGLTAAYYLAKNGLKVCVLERSLAFGGGS   60 (254)
T ss_pred             HHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence            39999997   6799999999999999864

This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.

>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional

Probab=92.36  E-value=0.097  Score=48.30  Aligned_cols=53  Identities=13%  Similarity=0.372  Sum_probs=35.5

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCC
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLA  148 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~  148 (350)
                      .|||+||+   ++|++|+|+|+...+||.+..    +|..++   ...  ..   ....++++++|++
T Consensus        35 pAGl~AA~~la~~G~~V~liEk~~~~Ggg~~~----gg~~~~---~~~--v~---~~~~~~l~~~gv~   90 (257)
T PRK04176         35 PSGLTAAYYLAKAGLKVAVFERKLSFGGGMWG----GGMLFN---KIV--VQ---EEADEILDEFGIR   90 (257)
T ss_pred             HHHHHHHHHHHhCCCeEEEEecCCCCCCcccc----Cccccc---ccc--ch---HHHHHHHHHCCCC
Confidence            39999997   679999999999999986531    232221   000  11   1566788888874

>PRK06184 hypothetical protein; Provisional

Probab=91.96  E-value=0.18  Score=51.04  Aligned_cols=52  Identities=23%  Similarity=0.279  Sum_probs=35.4

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++++||++|.   +.|++|+|+|+.+.+.-.      ..+       ..+   .+   +.+++++++|+.+++.
T Consensus        11 aGpaGl~~A~~La~~Gi~v~viE~~~~~~~~------~ra-------~~l---~~---~~~e~l~~lGl~~~l~   65 (502)
T PRK06184         11 AGPTGLTLAIELARRGVSFRLIEKAPEPFPG------SRG-------KGI---QP---RTQEVFDDLGVLDRVV   65 (502)
T ss_pred             CCHHHHHHHHHHHHCCCcEEEEeCCCCCCcC------ccc-------eee---cH---HHHHHHHHcCcHHHHH
Confidence            4459999997   689999999998764211      001       111   23   6789999999876544

>PRK08163 salicylate hydroxylase; Provisional

Probab=91.89  E-value=0.21  Score=48.58  Aligned_cols=50  Identities=26%  Similarity=0.436  Sum_probs=33.7

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV  151 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l  151 (350)
                      +|+||++|.   ++|++|+|+|+++.++-        .|..+     .+   .+   +..++++++|+.+.+
T Consensus        13 GiaGl~~A~~L~~~g~~v~v~Er~~~~~~--------~g~gi-----~l---~~---~~~~~l~~lg~~~~~   65 (396)
T PRK08163         13 GIGGLAAALALARQGIKVKLLEQAAEIGE--------IGAGI-----QL---GP---NAFSALDALGVGEAA   65 (396)
T ss_pred             cHHHHHHHHHHHhCCCcEEEEeeCccccc--------cccee-----ee---Cc---hHHHHHHHcCChHHH
Confidence            349999997   67999999999875421        12111     11   22   577889999986543

>PRK06115 dihydrolipoamide dehydrogenase; Reviewed

Probab=91.78  E-value=0.11  Score=52.15  Aligned_cols=34  Identities=21%  Similarity=0.259  Sum_probs=27.0

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEE
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAV  341 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~  341 (350)
                      +.+.+.+.|. .|++|++++.|++|+.+++++.++
T Consensus       217 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~  251 (466)
T PRK06115        217 TAKTLQKALTKQGMKFKLGSKVTGATAGADGVSLT  251 (466)
T ss_pred             HHHHHHHHHHhcCCEEEECcEEEEEEEcCCeEEEE
Confidence            5566777777 789999999999998776666554

>TIGR01292 TRX_reduct thioredoxin-disulfide reductase

Probab=91.77  E-value=0.15  Score=47.32  Aligned_cols=29  Identities=17%  Similarity=0.232  Sum_probs=24.3

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWVRSV  113 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T~  113 (350)
                      .|||+||.   +.|++|+|+|+.+ +||++...
T Consensus        10 ~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~~   41 (300)
T TIGR01292        10 PAGLTAAIYAARANLKTLIIEGME-PGGQLTTT   41 (300)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeccC-CCcceeec
Confidence            49999987   5799999999876 89987654

This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).

>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family

Probab=91.70  E-value=0.2  Score=48.24  Aligned_cols=57  Identities=21%  Similarity=0.307  Sum_probs=36.0

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      +++|||++|+   ++|++|+|+|++...+=+      ..++  +..+..+.   +   +..++++++|+.+++.
T Consensus         7 aG~aGl~~A~~L~~~G~~v~v~Er~~~~~~~------~~~~--~~~~~~l~---~---~~~~~l~~lGl~~~~~   66 (385)
T TIGR01988         7 GGMVGLALALALARSGLKIALIEATPAEAAA------TPGF--DNRVSALS---A---ASIRLLEKLGVWDKIE   66 (385)
T ss_pred             CCHHHHHHHHHHhcCCCEEEEEeCCCccccC------CCCC--CcceeecC---H---HHHHHHHHCCchhhhh
Confidence            5569999997   679999999999875411      0111  11111122   1   4678889999876543

This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki

>KOG2415|consensus

Probab=91.58  E-value=0.18  Score=49.21  Aligned_cols=76  Identities=21%  Similarity=0.210  Sum_probs=48.6

Q ss_pred             eecCccccccccccccccccccccccccccccccccccCCCCCCC-------------ceeehh----hHhHhhhc----
Q psy7666          34 LKIPTLSESTCLYLQPLPEARYLSFKFQDCHCETSIQKRPFPPDL-------------LLLLVI----RILCTVLR----   92 (350)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~v~vi----aGLaaA~~----   92 (350)
                      |+|-.++..-|...||++..+-++...-.....+   -.|..++.             -.|.|+    |||+||.+    
T Consensus        22 l~i~~~~~~l~~~s~~~r~~s~~~~~~~~tt~~~---l~~~~~d~r~~~v~~~R~~e~~Dv~IVG~GPAGLsaAIrlKQl   98 (621)
T KOG2415|consen   22 LKISRLSLPLLASSDMTRKFSNLSCRPRITTHYT---LNPLTKDERWLDVNMERESEEVDVVIVGAGPAGLSAAIRLKQL   98 (621)
T ss_pred             eecccccccccccccchhhhhhhccccceeceee---ecCCCcchhhhcccchhhhccccEEEECCCchhHHHHHHHHHH
Confidence            7888899999999999887443333222222211   11222220             123333    99999972    


Q ss_pred             -----CCCCEEEEecCCCCCcceEE
Q psy7666          93 -----ISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        93 -----~G~~VtVlEa~drvGGRi~T  112 (350)
                           ...+|.|+|++..+||.+-|
T Consensus        99 a~~~~~dlrVcvvEKaa~~GghtlS  123 (621)
T KOG2415|consen   99 AAKANKDLRVCVVEKAAEVGGHTLS  123 (621)
T ss_pred             HHhcCCceEEEEEeeccccCCceec
Confidence                 25899999999999999766

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=91.48  E-value=0.12  Score=51.03  Aligned_cols=65  Identities=15%  Similarity=0.300  Sum_probs=35.4

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCC--------cceEEEec-C--CCeEEe--cCCceec---CCCCCchHHHHHHHH
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLG--------GWVRSVQS-P--EGLIFE--KGPRTIR---PKGRLGANTLKLVED  144 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvG--------GRi~T~~~-~--~G~~~D--~Ga~~~~---~~~~~~~~l~~l~~e  144 (350)
                      .|||.||.   +.|.+|+|||+.+++|        ||++--+. .  ..|.-+  ..+..+.   ... +...+.+++++
T Consensus        10 aAGl~aA~~aa~~g~~V~vlE~~~~~gkKil~tG~GrCN~tn~~~~~~~~~~~~~~~~~f~~~~l~~f-~~~d~~~ff~~   88 (409)
T PF03486_consen   10 AAGLMAAITAAEKGARVLVLERNKRVGKKILITGNGRCNLTNLNIDPSEFLSGYGRNPKFLKSALKRF-SPEDLIAFFEE   88 (409)
T ss_dssp             HHHHHHHHHHHHTT--EEEE-SSSSS-HHHHHCGGGT-EEEETTSSGGGEECS-TBTTTCTHHHHHHS--HHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCcccccceeecCCCCccccccccchhhHhhhcccchHHHHHHHhcC-CHHHHHHHHHh
Confidence            39999998   5699999999999994        88885551 1  122222  1333331   111 12367888888


Q ss_pred             cCCCC
Q psy7666         145 LGLAD  149 (350)
Q Consensus       145 lGl~~  149 (350)
                      +|++.
T Consensus        89 ~Gv~~   93 (409)
T PF03486_consen   89 LGVPT   93 (409)
T ss_dssp             TT--E
T ss_pred             cCCeE
Confidence            88754

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional

Probab=91.42  E-value=0.13  Score=51.48  Aligned_cols=43  Identities=19%  Similarity=0.239  Sum_probs=34.2

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      .+.+.+.+.+. .|++|+++++|++|+.+++++.|+..+|++++
T Consensus       217 ~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~v~~~~g~~i~  260 (461)
T PRK05249        217 EISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVIVHLKSGKKIK  260 (461)
T ss_pred             HHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEEEEECCCCEEE
Confidence            36667777777 78999999999999987778888777776553

>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit

Probab=91.38  E-value=0.19  Score=50.72  Aligned_cols=33  Identities=24%  Similarity=0.329  Sum_probs=28.4

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    +||+||.   +.|++|+|+|+.+++||.+.
T Consensus       144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~  183 (485)
T TIGR01317       144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM  183 (485)
T ss_pred             CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence            567777    8999987   57999999999999999875

This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.

>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=91.36  E-value=0.14  Score=50.76  Aligned_cols=29  Identities=21%  Similarity=0.290  Sum_probs=23.4

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ..||++||.   ++|.+|+|+|+.+.+||...
T Consensus         8 G~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t   39 (428)
T PF12831_consen    8 GPAGVAAAIAAARAGAKVLLIEKGGFLGGMAT   39 (428)
T ss_dssp             SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGG
T ss_pred             cHHHHHHHHHHHHCCCEEEEEECCccCCCcce
Confidence            349999988   68999999999999999764

>TIGR01813 flavo_cyto_c flavocytochrome c

Probab=91.25  E-value=0.15  Score=50.66  Aligned_cols=29  Identities=24%  Similarity=0.283  Sum_probs=24.4

Q ss_pred             ehhhHhHhhh---cCC-CCEEEEecCCCCCcce
Q psy7666          82 LVIRILCTVL---RIS-TPITLLESSSRLGGWV  110 (350)
Q Consensus        82 ~viaGLaaA~---~~G-~~VtVlEa~drvGGRi  110 (350)
                      +.+|||+||+   ++| .+|+|+|+.+..||..
T Consensus         7 ~G~AGl~AA~~aa~~G~~~V~vlEk~~~~gg~s   39 (439)
T TIGR01813         7 SGFAGLSAALSAKKAGAANVVLLEKMPVIGGNS   39 (439)
T ss_pred             CCHHHHHHHHHHHHcCCccEEEEecCCCCCCcc
Confidence            3459999987   579 9999999999988863

This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.

>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant

Probab=91.00  E-value=0.16  Score=50.55  Aligned_cols=43  Identities=12%  Similarity=0.211  Sum_probs=32.7

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      .+.+.+.+.|. .|+++++++.|++|...++++.|+..+|+++.
T Consensus       208 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~g~~i~  251 (446)
T TIGR01424       208 DMRALLARNMEGRGIRIHPQTSLTSITKTDDGLKVTLSHGEEIV  251 (446)
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEEEcCCcEee
Confidence            35556666666 78999999999999887777778777776543

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.

>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase

Probab=90.82  E-value=0.19  Score=50.21  Aligned_cols=39  Identities=15%  Similarity=0.154  Sum_probs=30.9

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      .+.+.+.+.+. .|++|++++.|++|+.+++++.|...+|
T Consensus       212 ~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~g  251 (461)
T TIGR01350       212 EVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVVYENKGG  251 (461)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEeCC
Confidence            35556666676 7899999999999998877887776666

The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.

>PF00890 FAD_binding_2: FAD binding domain of the Pfam family

Probab=90.78  E-value=0.14  Score=50.26  Aligned_cols=45  Identities=18%  Similarity=0.240  Sum_probs=34.4

Q ss_pred             cHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe---EEEEe-CCCcee
Q psy7666         304 GLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG---VKAVD-QPIHQM  348 (350)
Q Consensus       304 G~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g---v~V~~-~~G~~~  348 (350)
                      +-..+++.|.+.+. .|++|+++++|+++..++++   +.+.. .+|+.+
T Consensus       139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~  188 (417)
T PF00890_consen  139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFV  188 (417)
T ss_dssp             HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEE
T ss_pred             cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEE
Confidence            55678899999888 78999999999999998775   33442 455543

; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....

>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]

Probab=90.72  E-value=0.17  Score=49.54  Aligned_cols=30  Identities=13%  Similarity=-0.025  Sum_probs=26.6

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      +.||++||+   ++|++|.|+|+.+.+|-+..+
T Consensus        12 GPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~   44 (396)
T COG0644          12 GPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC   44 (396)
T ss_pred             chHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence            349999998   679999999999999998777

>PRK07121 hypothetical protein; Validated

Probab=90.58  E-value=0.28  Score=49.60  Aligned_cols=27  Identities=19%  Similarity=0.337  Sum_probs=23.3

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      +|||+||+   ++|.+|+|+|+.+..||..
T Consensus        30 ~AGl~AA~~aae~G~~VillEK~~~~gG~s   59 (492)
T PRK07121         30 AAGACAAIEAAAAGARVLVLERAAGAGGAT   59 (492)
T ss_pred             HHHHHHHHHHHHCCCeEEEEeCCCCCCCcc
Confidence            49999987   5699999999999988853

>PLN02985 squalene monooxygenase

Probab=90.56  E-value=0.85  Score=46.46  Aligned_cols=52  Identities=13%  Similarity=0.121  Sum_probs=33.3

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++++||++|.   ++|++|+|+|+......+.      .       ...+.+      +-.+.++++|+.+.+.
T Consensus        51 AG~aGlalA~aLa~~G~~V~vlEr~~~~~~~~------~-------g~~L~p------~g~~~L~~LGl~d~l~  105 (514)
T PLN02985         51 AGVGGSALAYALAKDGRRVHVIERDLREPERM------M-------GEFMQP------GGRFMLSKLGLEDCLE  105 (514)
T ss_pred             CCHHHHHHHHHHHHcCCeEEEEECcCCCCccc------c-------ccccCc------hHHHHHHHcCCcchhh
Confidence            3459999987   6799999999975421110      1       122322      3457889999976544

>COG0579 Predicted dehydrogenase [General function prediction only]

Probab=90.48  E-value=0.59  Score=46.31  Aligned_cols=43  Identities=21%  Similarity=0.258  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCce
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQ  347 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~  347 (350)
                      +..+..+|++.+. +|++|++|++|+.|+..++| +.+.+.+|++
T Consensus       152 ~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~  196 (429)
T COG0579         152 PGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEE  196 (429)
T ss_pred             HHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcE
Confidence            5668889999998 89999999999999999885 6778888875

>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form

Probab=90.30  E-value=0.22  Score=54.81  Aligned_cols=34  Identities=26%  Similarity=0.370  Sum_probs=29.1

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .+|+||    |||+||.   ++|++|+|+|+.+++||.+..
T Consensus       164 ~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~~  204 (985)
T TIGR01372       164 CDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLLS  204 (985)
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeeec
Confidence            456666    9999998   679999999999999998864

This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06481 fumarate reductase flavoprotein subunit; Validated

Probab=90.13  E-value=0.22  Score=50.61  Aligned_cols=27  Identities=15%  Similarity=0.100  Sum_probs=23.4

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      +|||+||+   ++|.+|+|+|+.+.+||..
T Consensus        71 ~AGl~AAi~Aa~~Ga~VivlEK~~~~GG~s  100 (506)
T PRK06481         71 GAGMSAAIEAKDAGMNPVILEKMPVAGGNT  100 (506)
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCcc
Confidence            49999987   5799999999999999853

>PRK12770 putative glutamate synthase subunit beta; Provisional

Probab=90.13  E-value=0.36  Score=46.49  Aligned_cols=34  Identities=12%  Similarity=0.107  Sum_probs=28.5

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      ++|+||    +||++|.   +.|++|+|+|+.+++||.+..
T Consensus        19 ~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   59 (352)
T PRK12770         19 KKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLMLF   59 (352)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceeee
Confidence            567766    8999886   579999999999999998754

>TIGR00275 flavoprotein, HI0933 family

Probab=90.02  E-value=0.25  Score=48.62  Aligned_cols=29  Identities=21%  Similarity=0.212  Sum_probs=25.1

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      +++|||+||.   +.|.+|+|+|+.+++|+.+
T Consensus         5 gG~aGl~aAi~aa~~G~~V~llEk~~~~G~k~   36 (400)
T TIGR00275         5 GGAAGLMAAITAAREGLSVLLLEKNKKIGKKL   36 (400)
T ss_pred             EeHHHHHHHHHHHhcCCcEEEEecCccccccc
Confidence            6679999997   5799999999999998754

The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.

>PRK06753 hypothetical protein; Provisional

Probab=89.99  E-value=0.23  Score=47.91  Aligned_cols=25  Identities=12%  Similarity=0.115  Sum_probs=21.1

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRL  106 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drv  106 (350)
                      +.++||++|.   ++|++|+|+|+++.+
T Consensus         8 gG~aGl~~A~~L~~~g~~v~v~E~~~~~   35 (373)
T PRK06753          8 AGIGGLTAAALLQEQGHEVKVFEKNESV   35 (373)
T ss_pred             CCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence            3459999997   689999999999764

>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase

Probab=89.93  E-value=0.43  Score=46.62  Aligned_cols=54  Identities=15%  Similarity=0.062  Sum_probs=36.6

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++++||++|.   ++|++|+|+|+.+..      ..  .   -+.|+..+.   +   +.+++++++|+.+++.
T Consensus        10 aG~aGl~~A~~L~~~G~~v~viE~~~~~------~~--~---~~~~a~~l~---~---~~~~~L~~lGl~~~l~   66 (390)
T TIGR02360        10 AGPSGLLLGQLLHKAGIDNVILERQSRD------YV--L---GRIRAGVLE---Q---GTVDLLREAGVDERMD   66 (390)
T ss_pred             ccHHHHHHHHHHHHCCCCEEEEECCCCc------cc--C---CceeEeeEC---H---HHHHHHHHCCChHHHH
Confidence            4569999987   679999999998751      00  0   023444332   2   5789999999876544

Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.

>PRK05868 hypothetical protein; Validated

Probab=89.90  E-value=0.54  Score=45.67  Aligned_cols=51  Identities=20%  Similarity=0.307  Sum_probs=33.9

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV  151 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l  151 (350)
                      ++++||++|.   ++|++|+|+|+++...        ..|..+++        .+   +..++++++|+.+.+
T Consensus         9 gG~aGl~~A~~L~~~G~~v~viE~~~~~~--------~~g~~i~~--------~~---~a~~~L~~lGl~~~~   62 (372)
T PRK05868          9 ASVAGTAAAYWLGRHGYSVTMVERHPGLR--------PGGQAIDV--------RG---PALDVLERMGLLAAA   62 (372)
T ss_pred             CCHHHHHHHHHHHhCCCCEEEEcCCCCCC--------CCceeeee--------Cc---hHHHHHHhcCCHHHH
Confidence            3459999997   6799999999986631        12222221        12   456888899986543

>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional

Probab=89.78  E-value=0.34  Score=49.88  Aligned_cols=33  Identities=30%  Similarity=0.527  Sum_probs=28.1

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    +||++|.   +.|++|+|+|+.+.+||.++
T Consensus       138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~  177 (564)
T PRK12771        138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR  177 (564)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence            567777    9999987   57999999999999999754

>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=89.77  E-value=0.59  Score=45.45  Aligned_cols=57  Identities=16%  Similarity=0.244  Sum_probs=34.9

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV  151 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l  151 (350)
                      ++++||++|.   ++|++|+|+|+.+..     ... ..| .++.+...+.   +   +-+++++++|+.+.+
T Consensus        11 gG~aGl~~A~~L~~~G~~v~l~E~~~~~-----~~~-~~~-~~~~r~~~l~---~---~~~~~L~~lG~~~~~   70 (384)
T PRK08849         11 GGMVGAATALGFAKQGRSVAVIEGGEPK-----AFE-PSQ-PMDIRVSAIS---Q---TSVDLLESLGAWSSI   70 (384)
T ss_pred             cCHHHHHHHHHHHhCCCcEEEEcCCCcc-----cCC-CCC-CCCccEEEec---H---HHHHHHHHCCCchhh
Confidence            4569999997   679999999987421     111 111 1122222222   2   568899999987654

>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]

Probab=89.75  E-value=0.21  Score=46.09  Aligned_cols=47  Identities=17%  Similarity=0.203  Sum_probs=41.3

Q ss_pred             EEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         299 WSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       299 ~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      |.-.-||.+|.+.|+..|    +|+++++|+.|.+.++.|++++++|...+
T Consensus       101 yvg~pgmsalak~LAtdL----~V~~~~rVt~v~~~~~~W~l~~~~g~~~~  147 (331)
T COG3380         101 YVGEPGMSALAKFLATDL----TVVLETRVTEVARTDNDWTLHTDDGTRHT  147 (331)
T ss_pred             cccCcchHHHHHHHhccc----hhhhhhhhhhheecCCeeEEEecCCCccc
Confidence            556789999999999988    69999999999999999999998876543

>PRK08013 oxidoreductase; Provisional

Probab=89.75  E-value=0.52  Score=46.17  Aligned_cols=58  Identities=14%  Similarity=0.030  Sum_probs=36.8

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++++||++|.   ++|++|+|+|+.+...-       ..|...+.-+..+   .+   ..+++++++|+.+++.
T Consensus        11 aGpaGl~~A~~La~~G~~v~viE~~~~~~~-------~~g~~~~~r~~~l---~~---~s~~~L~~lGl~~~~~   71 (400)
T PRK08013         11 GGMVGLAVACGLQGSGLRVAVLEQRVPEPL-------AADAPPALRVSAI---NA---ASEKLLTRLGVWQDIL   71 (400)
T ss_pred             cCHHHHHHHHHHhhCCCEEEEEeCCCCccc-------ccCCCCCceeeec---ch---hHHHHHHHcCCchhhh
Confidence            4569999997   67999999999875321       0111122222223   22   5678999999876543

>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=89.60  E-value=0.24  Score=49.19  Aligned_cols=32  Identities=25%  Similarity=0.224  Sum_probs=26.0

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCC-CCcceE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSR-LGGWVR  111 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~dr-vGGRi~  111 (350)
                      +|+||    ||++||.   ++|++|+|+|+.+. +||.+-
T Consensus         5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~~~~~~GG~c~   44 (438)
T PRK07251          5 DLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCI   44 (438)
T ss_pred             CEEEECCCHHHHHHHHHHHhCCCEEEEEecCCcccceeee
Confidence            36666    9999997   57999999999875 699754

>PRK12834 putative FAD-binding dehydrogenase; Reviewed

Probab=89.20  E-value=0.3  Score=50.16  Aligned_cols=29  Identities=21%  Similarity=0.253  Sum_probs=24.4

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCC--CCCcceE
Q psy7666          83 VIRILCTVL---RISTPITLLESSS--RLGGWVR  111 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~d--rvGGRi~  111 (350)
                      .+|||+||.   ++|.+|+|+|+.+  .+||...
T Consensus        13 G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~   46 (549)
T PRK12834         13 GLAGLVAAAELADAGKRVLLLDQENEANLGGQAF   46 (549)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence            349999987   5799999999999  8899653

>PRK13984 putative oxidoreductase; Provisional

Probab=89.20  E-value=0.37  Score=49.99  Aligned_cols=33  Identities=24%  Similarity=0.337  Sum_probs=27.9

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    +||+||.   ++|++|+|+|+.+.+||...
T Consensus       284 ~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~  323 (604)
T PRK13984        284 KKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR  323 (604)
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence            556666    8999987   67999999999999999754

>PRK12409 D-amino acid dehydrogenase small subunit; Provisional

Probab=89.15  E-value=0.31  Score=47.81  Aligned_cols=46  Identities=13%  Similarity=0.154  Sum_probs=34.5

Q ss_pred             EEEecCc---HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC
Q psy7666         298 VWSVEGG---LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ  343 (350)
Q Consensus       298 ~~~~~GG---~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~  343 (350)
                      ++.+..|   ...+..+|++.+. .|++|+.+++|++|+.++++|.|.+.
T Consensus       186 ~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~  235 (410)
T PRK12409        186 YYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQ  235 (410)
T ss_pred             EEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEE
Confidence            4444433   3557778888887 89999999999999988877776543

>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated

Probab=88.94  E-value=0.58  Score=45.83  Aligned_cols=56  Identities=11%  Similarity=0.091  Sum_probs=33.8

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCC-CCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSS-RLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~d-rvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++++||++|.   ++|++|+|+|+.. ..     +.. ..+   +.-+..+   .+   +-+++++++|+.+.+.
T Consensus        12 aG~~Gl~~A~~L~~~G~~v~viE~~~~~~-----~~~-~~~---~~r~~~l---~~---~~~~~L~~lGl~~~l~   71 (405)
T PRK08850         12 GGMVGLALAAALKESDLRIAVIEGQLPEE-----ALN-ELP---DVRVSAL---SR---SSEHILRNLGAWQGIE   71 (405)
T ss_pred             ccHHHHHHHHHHHhCCCEEEEEcCCCCcc-----ccc-CCC---Ccceecc---cH---HHHHHHHhCCchhhhh
Confidence            4569999997   6799999999862 11     000 000   1101112   22   6789999999876543

>PRK10262 thioredoxin reductase; Provisional

Probab=88.91  E-value=0.37  Score=45.59  Aligned_cols=34  Identities=18%  Similarity=0.246  Sum_probs=26.8

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV  113 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~  113 (350)
                      ++|+||    |||+||.   +.|++|+|+|+ ...||.+...
T Consensus         7 ~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~-~~~gg~~~~~   47 (321)
T PRK10262          7 SKLLILGSGPAGYTAAVYAARANLQPVLITG-MEKGGQLTTT   47 (321)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCeEEEEe-ecCCCceecC
Confidence            456666    9999987   57999999995 4789987654

>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit

Probab=88.74  E-value=0.36  Score=49.65  Aligned_cols=33  Identities=21%  Similarity=0.327  Sum_probs=26.7

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV  113 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~  113 (350)
                      .|+||    |||+||.   ++|++|+|+|+ +++||.+...
T Consensus         6 DVvIIGgGpAGL~AA~~lar~g~~V~liE~-~~~GG~~~~~   45 (555)
T TIGR03143         6 DLIIIGGGPAGLSAGIYAGRAKLDTLIIEK-DDFGGQITIT   45 (555)
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCceEEec
Confidence            35555    9999997   57999999998 5899988653

This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).

>PRK08274 tricarballylate dehydrogenase; Validated

Probab=88.74  E-value=0.37  Score=48.22  Aligned_cols=27  Identities=33%  Similarity=0.517  Sum_probs=22.1

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCC--CCcc
Q psy7666          83 VIRILCTVL---RISTPITLLESSSR--LGGW  109 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~dr--vGGR  109 (350)
                      .+|||+||+   ++|.+|+|+|+.+.  .||.
T Consensus        13 G~aGl~AA~~aa~~G~~V~vlEk~~~~~~GG~   44 (466)
T PRK08274         13 GNAALCAALAAREAGASVLLLEAAPREWRGGN   44 (466)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEeCCCCcCCCcc
Confidence            449999987   57999999999874  6774

>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1

Probab=88.63  E-value=0.31  Score=45.95  Aligned_cols=26  Identities=35%  Similarity=0.396  Sum_probs=22.0

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      ++|+|+++|+   +.|++|+|+|+. .+|+
T Consensus         7 aGi~G~~~A~~La~~G~~V~l~e~~-~~~~   35 (358)
T PF01266_consen    7 AGIAGLSTAYELARRGHSVTLLERG-DIGS   35 (358)
T ss_dssp             TSHHHHHHHHHHHHTTSEEEEEESS-STTS
T ss_pred             cCHHHHHHHHHHHHCCCeEEEEeec-cccc
Confidence            4569999998   789999999999 5555

1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....

>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways

Probab=88.63  E-value=0.31  Score=45.95  Aligned_cols=52  Identities=25%  Similarity=0.389  Sum_probs=33.9

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++++||++|+   ++|++|+|+|+++..--.        +     .+..+.+      +.+++++++|+.+.+.
T Consensus         9 aG~aGl~~A~~L~~~G~~v~i~E~~~~~~~~--------~-----~~~~l~~------~~~~~l~~lgl~~~~~   63 (356)
T PF01494_consen    9 AGPAGLAAALALARAGIDVTIIERRPDPRPK--------G-----RGIGLSP------NSLRILQRLGLLDEIL   63 (356)
T ss_dssp             -SHHHHHHHHHHHHTTCEEEEEESSSSCCCS--------S-----SSEEEEH------HHHHHHHHTTEHHHHH
T ss_pred             CCHHHHHHHHHHHhcccccccchhccccccc--------c-----ccccccc------ccccccccccchhhhh
Confidence            3459999997   789999999997653211        1     1222321      5568888888765433

In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....

>PRK06416 dihydrolipoamide dehydrogenase; Reviewed

Probab=88.58  E-value=0.32  Score=48.61  Aligned_cols=39  Identities=15%  Similarity=0.198  Sum_probs=30.7

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      .+.+.+.+.|. .|++|+++++|++|..+++++.|...+|
T Consensus       214 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~v~v~~~~g  253 (462)
T PRK06416        214 EISKLAERALKKRGIKIKTGAKAKKVEQTDDGVTVTLEDG  253 (462)
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEEEEEEeC
Confidence            45566666676 7899999999999998777787776655

>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial

Probab=88.19  E-value=0.33  Score=48.49  Aligned_cols=38  Identities=16%  Similarity=0.090  Sum_probs=29.2

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPI  345 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G  345 (350)
                      +.+.+.+.|. .|+++++++.|++|..++++ +.|+..+|
T Consensus       209 ~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g  248 (450)
T TIGR01421       209 ISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDG  248 (450)
T ss_pred             HHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCC
Confidence            5566666776 78999999999999876544 67777666

The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.

>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=88.09  E-value=0.36  Score=49.75  Aligned_cols=37  Identities=16%  Similarity=0.106  Sum_probs=30.8

Q ss_pred             EecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666         300 SVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG  337 (350)
Q Consensus       300 ~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g  337 (350)
                      +..+| ..|+.+|.+.+. .|++|+++++|+++..++++
T Consensus       212 ~~~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~  249 (564)
T PRK12845        212 YAAGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGR  249 (564)
T ss_pred             ccCCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCE
Confidence            35667 889999998887 88999999999999875553

>PRK06834 hypothetical protein; Provisional

Probab=88.05  E-value=0.67  Score=46.86  Aligned_cols=24  Identities=8%  Similarity=-0.117  Sum_probs=20.3

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      ++++||++|.   ++|++|+|+|+.+.
T Consensus        11 aGp~Gl~lA~~La~~G~~v~vlEr~~~   37 (488)
T PRK06834         11 GGPTGLMLAGELALAGVDVAIVERRPN   37 (488)
T ss_pred             CCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4459999997   67999999999875

>PRK07236 hypothetical protein; Provisional

Probab=87.96  E-value=0.5  Score=45.94  Aligned_cols=24  Identities=21%  Similarity=0.177  Sum_probs=20.0

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      ++++||++|+   +.|++|+|||+++.
T Consensus        14 aG~aGl~~A~~L~~~G~~v~v~E~~~~   40 (386)
T PRK07236         14 GSLGGLFAALLLRRAGWDVDVFERSPT   40 (386)
T ss_pred             CCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence            3459999987   67999999999864

>PRK12842 putative succinate dehydrogenase; Reviewed

Probab=87.94  E-value=0.37  Score=49.77  Aligned_cols=32  Identities=9%  Similarity=0.023  Sum_probs=27.5

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG  337 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g  337 (350)
                      ..|.++|.+.+. .|++|+++++|++|..++++
T Consensus       214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~  246 (574)
T PRK12842        214 NALAARLAKSALDLGIPILTGTPARELLTEGGR  246 (574)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCE
Confidence            568888888777 78999999999999987764

>PRK08244 hypothetical protein; Provisional

Probab=87.94  E-value=0.53  Score=47.46  Aligned_cols=24  Identities=8%  Similarity=-0.204  Sum_probs=20.2

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      ++++||++|.   ++|++|+|+|+.+.
T Consensus        10 aGpaGl~lA~~L~~~G~~v~viEr~~~   36 (493)
T PRK08244         10 GGPVGLMLASELALAGVKTCVIERLKE   36 (493)
T ss_pred             CCHHHHHHHHHHHHCCCcEEEEecCCC
Confidence            4459999997   68999999999865

>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated

Probab=87.81  E-value=1  Score=46.10  Aligned_cols=51  Identities=25%  Similarity=0.304  Sum_probs=35.0

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      +++||++|.   +.|++|+|+|+.+.++..-+.+.             +   .+   +.+++++++|+.+++.
T Consensus        19 Gp~Gl~lA~~L~~~G~~v~v~Er~~~~~~~~ra~~-------------l---~~---~~~~~L~~lGl~~~l~   72 (538)
T PRK06183         19 GPVGLTLANLLGQYGVRVLVLERWPTLYDLPRAVG-------------I---DD---EALRVLQAIGLADEVL   72 (538)
T ss_pred             CHHHHHHHHHHHHCCCcEEEEecCCCCCCCCceee-------------e---CH---HHHHHHHHcCChhHHH
Confidence            349999987   67999999999976542211111             1   12   6788999999876544

>PRK06467 dihydrolipoamide dehydrogenase; Reviewed

Probab=87.79  E-value=0.4  Score=48.20  Aligned_cols=32  Identities=19%  Similarity=0.237  Sum_probs=26.5

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      .|+||    +|++||.   +.|++|+|+|+.+.+||.+.
T Consensus         6 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~   44 (471)
T PRK06467          6 QVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL   44 (471)
T ss_pred             eEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence            35665    8999987   57999999999889999763

>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain

Probab=87.75  E-value=1.6  Score=42.34  Aligned_cols=52  Identities=19%  Similarity=0.282  Sum_probs=40.9

Q ss_pred             EEEecCcH---HHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         298 VWSVEGGL---QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       298 ~~~~~GG~---~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ++.+.+|.   ..++.+|++.+..|++|+.+++|+.|+.++++|.|++.+|.+++
T Consensus       124 l~~~~~g~idp~~~~~~l~~~~~~G~~i~~~~~V~~i~~~~~~~~v~t~~g~~~~  178 (381)
T TIGR03197       124 LFFPQGGWLSPPQLCRALLAHAGIRLTLHFNTEITSLERDGEGWQLLDANGEVIA  178 (381)
T ss_pred             eEeCCCcccChHHHHHHHHhccCCCcEEEeCCEEEEEEEcCCeEEEEeCCCCEEE
Confidence            44455553   56888888877657899999999999988888999988887543

In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.

>PRK12839 hypothetical protein; Provisional

Probab=87.67  E-value=0.49  Score=48.83  Aligned_cols=41  Identities=17%  Similarity=0.182  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeC-C---eEEEEeCCCc
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLE-K---GVKAVDQPIH  346 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~-~---gv~V~~~~G~  346 (350)
                      ..|+..|++.+. .|++|+++++|++|..++ +   ||.+...+|.
T Consensus       214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~g~V~GV~~~~~~g~  259 (572)
T PRK12839        214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKNGRVTGVRVQGPDGA  259 (572)
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCCCcEEEEEEEeCCCc
Confidence            447778877777 789999999999998753 3   3444445554

>PRK10157 putative oxidoreductase FixC; Provisional

Probab=87.51  E-value=0.51  Score=46.81  Aligned_cols=25  Identities=16%  Similarity=0.217  Sum_probs=20.9

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      .+||++||+   ++|++|+|+|+.+.+|
T Consensus        14 GpAG~~aA~~La~~G~~V~llEr~~~~g   41 (428)
T PRK10157         14 GLAGSVAALVLAREGAQVLVIERGNSAG   41 (428)
T ss_pred             CHHHHHHHHHHHhCCCeEEEEEcCCCCC
Confidence            349999997   6799999999987654

>PRK07818 dihydrolipoamide dehydrogenase; Reviewed

Probab=87.46  E-value=0.43  Score=47.84  Aligned_cols=40  Identities=8%  Similarity=0.047  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC--CCc
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ--PIH  346 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~--~G~  346 (350)
                      .+.+.+.+.|. .|++|+++++|++|..+++++.|+..  +|.
T Consensus       214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~g~  256 (466)
T PRK07818        214 EVSKEIAKQYKKLGVKILTGTKVESIDDNGSKVTVTVSKKDGK  256 (466)
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCeEEEEEEecCCC
Confidence            35667777777 78999999999999877666655543  553

>PRK06475 salicylate hydroxylase; Provisional

Probab=87.39  E-value=0.44  Score=46.61  Aligned_cols=52  Identities=23%  Similarity=0.318  Sum_probs=33.7

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++|+||++|.   ++|++|+|+|+.+.+.        ..|      .-...  .+   +..++++++|+.+++.
T Consensus        10 gGiaGl~~A~~L~~~G~~V~i~E~~~~~~--------~~g------~gi~l--~~---~~~~~L~~~Gl~~~l~   64 (400)
T PRK06475         10 AGVAGLSAALELAARGWAVTIIEKAQELS--------EVG------AGLQL--AP---NAMRHLERLGVADRLS   64 (400)
T ss_pred             CCHHHHHHHHHHHhCCCcEEEEecCCccC--------cCC------cccee--Ch---hHHHHHHHCCChHHHh
Confidence            3459999987   6799999999986531        112      11111  12   5678888888865443

>PRK07588 hypothetical protein; Provisional

Probab=87.31  E-value=0.44  Score=46.35  Aligned_cols=24  Identities=21%  Similarity=0.086  Sum_probs=20.2

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      ++++||++|.   ++|++|+|+|+.++
T Consensus         8 gG~aGl~~A~~L~~~G~~v~v~E~~~~   34 (391)
T PRK07588          8 AGIAGPTLAYWLRRYGHEPTLIERAPE   34 (391)
T ss_pred             ccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence            3459999997   67999999999865

>PRK07538 hypothetical protein; Provisional

Probab=87.24  E-value=0.46  Score=46.71  Aligned_cols=25  Identities=20%  Similarity=0.175  Sum_probs=20.7

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRL  106 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drv  106 (350)
                      ++++||++|.   ++|++|+|+|+++.+
T Consensus         8 aG~aGl~~A~~L~~~G~~v~v~E~~~~~   35 (413)
T PRK07538          8 GGIGGLTLALTLHQRGIEVVVFEAAPEL   35 (413)
T ss_pred             CCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence            4459999997   679999999998653

>KOG2614|consensus

Probab=87.24  E-value=0.4  Score=46.70  Aligned_cols=24  Identities=33%  Similarity=0.238  Sum_probs=20.3

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      ++|+||++|.   ++|++|+|||++..
T Consensus        10 gGI~Gla~A~~l~r~G~~v~VlE~~e~   36 (420)
T KOG2614|consen   10 GGIVGLATALALHRKGIDVVVLESRED   36 (420)
T ss_pred             CcHHHHHHHHHHHHcCCeEEEEeeccc
Confidence            4569999987   78999999999854

>PRK06116 glutathione reductase; Validated

Probab=87.16  E-value=0.35  Score=48.17  Aligned_cols=43  Identities=16%  Similarity=0.178  Sum_probs=33.5

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT  349 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~  349 (350)
                      .+.+.+.+.|. .|++|+++++|++|+.++++ +.|++.+|+++.
T Consensus       209 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~  253 (450)
T PRK06116        209 DIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLT  253 (450)
T ss_pred             HHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEE
Confidence            35666777777 78999999999999887655 778877776553

>PRK06847 hypothetical protein; Provisional

Probab=86.84  E-value=0.52  Score=45.44  Aligned_cols=22  Identities=23%  Similarity=0.336  Sum_probs=19.2

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCC
Q psy7666          84 IRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      +|||++|.   +.|++|+|+|+++.
T Consensus        14 ~aGl~~A~~L~~~g~~v~v~E~~~~   38 (375)
T PRK06847         14 IGGLSAAIALRRAGIAVDLVEIDPE   38 (375)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCCC
Confidence            49999997   67999999999875

>PRK05976 dihydrolipoamide dehydrogenase; Validated

Probab=86.80  E-value=0.48  Score=47.55  Aligned_cols=33  Identities=21%  Similarity=0.324  Sum_probs=26.8

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSV  113 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~  113 (350)
                      +|+||    ||++||.   ++|++|+|+|+. ++||.+...
T Consensus         6 dvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~~   45 (472)
T PRK05976          6 DLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLHK   45 (472)
T ss_pred             cEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEcC
Confidence            46666    9999987   579999999985 899988553

>PRK06126 hypothetical protein; Provisional

Probab=86.78  E-value=0.63  Score=47.60  Aligned_cols=52  Identities=21%  Similarity=0.144  Sum_probs=33.7

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++++||++|+   +.|++|+|+|+.+...        ..+     .+..+   .+   ..+++++++|+.+++.
T Consensus        15 aGpaGL~~Al~La~~G~~v~viEr~~~~~--------~~~-----ra~~l---~~---r~~e~L~~lGl~~~l~   69 (545)
T PRK06126         15 GGPVGLALALDLGRRGVDSILVERKDGTA--------FNP-----KANTT---SA---RSMEHFRRLGIADEVR   69 (545)
T ss_pred             CCHHHHHHHHHHHHCCCcEEEEeCCCCCC--------CCC-----ccccC---CH---HHHHHHHhcChHHHHH
Confidence            3459999997   6799999999875321        011     11112   22   5778899999866443

>PRK09126 hypothetical protein; Provisional

Probab=86.72  E-value=0.58  Score=45.42  Aligned_cols=24  Identities=17%  Similarity=-0.032  Sum_probs=20.5

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      ++++||++|.   ++|++|+|+|+++.
T Consensus        11 gG~aGl~~A~~L~~~G~~v~v~E~~~~   37 (392)
T PRK09126         11 AGPAGLSFARSLAGSGLKVTLIERQPL   37 (392)
T ss_pred             cCHHHHHHHHHHHhCCCcEEEEeCCCc
Confidence            4459999997   67999999999875

>PRK07045 putative monooxygenase; Reviewed

Probab=86.38  E-value=0.52  Score=45.83  Aligned_cols=24  Identities=17%  Similarity=0.124  Sum_probs=20.4

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRL  106 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drv  106 (350)
                      +++||++|.   ++|++|+|+|+.+..
T Consensus        14 GpaGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07045         14 GIAGVALAHLLGARGHSVTVVERAARN   40 (388)
T ss_pred             cHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence            349999997   689999999998763

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=86.29  E-value=0.93  Score=44.13  Aligned_cols=54  Identities=15%  Similarity=0.215  Sum_probs=33.2

Q ss_pred             ehhhHhHhhh---cCC--CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RIS--TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G--~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++++||++|.   ++|  ++|+|+|+++....     . .++     .+..+   .+   +..++++++|+.+.+.
T Consensus         9 aG~aGl~~A~~L~~~g~g~~v~liE~~~~~~~-----~-~~~-----~~~~l---~~---~~~~~l~~lGl~~~~~   67 (403)
T PRK07333          9 GGYVGLALAVALKQAAPHLPVTVVDAAPAGAW-----S-RDP-----RASAI---AA---AARRMLEALGVWDEIA   67 (403)
T ss_pred             ccHHHHHHHHHHhcCCCCCEEEEEeCCCcccC-----C-CCc-----ceEEe---cH---HHHHHHHHCCChhhhh
Confidence            4569999997   454  99999999864211     0 011     11112   22   5678889999865443

>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=86.17  E-value=0.54  Score=48.66  Aligned_cols=32  Identities=25%  Similarity=0.163  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK  336 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~  336 (350)
                      ...++..|.+.+. .|++|+++++|++|..+++
T Consensus       212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~  244 (584)
T PRK12835        212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPD  244 (584)
T ss_pred             cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCC
Confidence            3557777766666 7899999999999998643

>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional

Probab=86.08  E-value=0.61  Score=46.32  Aligned_cols=40  Identities=13%  Similarity=0.274  Sum_probs=31.3

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH  346 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~  346 (350)
                      .+.+.+.+.|. .|+++++++.|++|..+++++.|++.+++
T Consensus       200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v~v~~~~g~  240 (441)
T PRK08010        200 DIADNIATILRDQGVDIILNAHVERISHHENQVQVHSEHAQ  240 (441)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEEcCCe
Confidence            35667777777 78999999999999987777777765553

>PRK14727 putative mercuric reductase; Provisional

Probab=86.06  E-value=0.51  Score=47.55  Aligned_cols=40  Identities=18%  Similarity=0.145  Sum_probs=31.2

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH  346 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~  346 (350)
                      .+.+.+.+.|. .|++|+++++|++|+.+++++.|...+++
T Consensus       229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~~~~v~~~~g~  269 (479)
T PRK14727        229 LLGETLTACFEKEGIEVLNNTQASLVEHDDNGFVLTTGHGE  269 (479)
T ss_pred             HHHHHHHHHHHhCCCEEEcCcEEEEEEEeCCEEEEEEcCCe
Confidence            35566777777 78999999999999887777777766553

>TIGR02032 GG-red-SF geranylgeranyl reductase family

Probab=85.92  E-value=0.56  Score=43.10  Aligned_cols=27  Identities=15%  Similarity=-0.139  Sum_probs=22.6

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      +.+|||++|.   +.|.+|+|+|+++..+.
T Consensus         8 aG~aGl~~A~~l~~~g~~v~vie~~~~~~~   37 (295)
T TIGR02032         8 AGPAGASAAYRLADKGLRVLLLEKKSFPRY   37 (295)
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEeccCCCCc
Confidence            4459999997   67999999999987665

This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.

>COG2081 Predicted flavoproteins [General function prediction only]

Probab=85.83  E-value=0.63  Score=45.28  Aligned_cols=32  Identities=16%  Similarity=0.338  Sum_probs=26.0

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      .|+||    |||-||.   ++|++|+|+|+.+.+|=++.
T Consensus         5 dviIIGgGpAGlMaA~~aa~~G~~V~lid~~~k~GrKil   43 (408)
T COG2081           5 DVIIIGGGPAGLMAAISAAKAGRRVLLIDKGPKLGRKIL   43 (408)
T ss_pred             eEEEECCCHHHHHHHHHHhhcCCEEEEEecCccccceeE
Confidence            46666    9998886   67999999999999975544

>PRK06292 dihydrolipoamide dehydrogenase; Validated

Probab=85.79  E-value=0.55  Score=46.87  Aligned_cols=30  Identities=23%  Similarity=0.401  Sum_probs=25.1

Q ss_pred             eehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          81 LLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      |+||    |||+||.   +.|.+|+|+|+ +++||.+.
T Consensus         6 vvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~   42 (460)
T PRK06292          6 VIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL   42 (460)
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence            5555    9999987   57999999999 78999765

>PRK06175 L-aspartate oxidase; Provisional

Probab=85.62  E-value=0.62  Score=46.33  Aligned_cols=27  Identities=15%  Similarity=0.021  Sum_probs=22.9

Q ss_pred             hhhHhHhhh--cCCCCEEEEecCCCCCcc
Q psy7666          83 VIRILCTVL--RISTPITLLESSSRLGGW  109 (350)
Q Consensus        83 viaGLaaA~--~~G~~VtVlEa~drvGGR  109 (350)
                      ++|||+||.  +.|.+|+|+|+.+..||.
T Consensus        13 G~AGl~AA~~a~~G~~V~lleK~~~~gg~   41 (433)
T PRK06175         13 GVAGLYSALNLRKDLKILMVSKGKLNECN   41 (433)
T ss_pred             hHHHHHHHHHhccCCCEEEEecCCCCCCc
Confidence            349999987  469999999999988874

>TIGR01790 carotene-cycl lycopene cyclase family protein

Probab=85.53  E-value=0.6  Score=45.31  Aligned_cols=28  Identities=21%  Similarity=0.125  Sum_probs=23.1

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      +++|||++|+   ++|++|+|+|+.+.+||.
T Consensus         7 aG~AGl~~A~~la~~g~~v~liE~~~~~~~~   37 (388)
T TIGR01790         7 GGPAGLAIALELARPGLRVQLIEPHPPIPGN   37 (388)
T ss_pred             CCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence            4559999987   579999999999877763

This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.

>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional

Probab=85.36  E-value=0.76  Score=46.75  Aligned_cols=28  Identities=18%  Similarity=0.270  Sum_probs=23.9

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      +. +||+||+   ++|.+|+|+|+.+.+||..
T Consensus        15 ~G-aGl~aA~~aa~~G~~V~vlEk~~~~Gg~t   45 (513)
T PRK12837         15 SG-GGVAGAYTAAREGLSVALVEATDKFGGTT   45 (513)
T ss_pred             ch-HHHHHHHHHHHCCCcEEEEecCCCCCcce
Confidence            56 8999987   5699999999999888853

>PRK10015 oxidoreductase; Provisional

Probab=84.83  E-value=0.67  Score=46.01  Aligned_cols=24  Identities=13%  Similarity=0.126  Sum_probs=20.3

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRL  106 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drv  106 (350)
                      +.||++||+   ++|++|+|+|+.+.+
T Consensus        14 GpAG~~aA~~LA~~G~~VlliEr~~~~   40 (429)
T PRK10015         14 GVAGSVAALVMARAGLDVLVIERGDSA   40 (429)
T ss_pred             CHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence            349999997   679999999998764

>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=84.79  E-value=0.95  Score=47.28  Aligned_cols=40  Identities=13%  Similarity=-0.027  Sum_probs=27.4

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKG  124 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~G  124 (350)
                      ++|||+||.   ++|.+|+|+|+....||  +|..-.+|.....|
T Consensus        17 G~AGl~AAl~Aae~G~~V~lieK~~~~~g--~s~~a~Ggi~a~~~   59 (626)
T PRK07803         17 GGAGLRAAIEARERGLRVAVVCKSLFGKA--HTVMAEGGCAAAMG   59 (626)
T ss_pred             CHHHHHHHHHHHHCCCCEEEEeccCCCCC--cceecCccceeecc
Confidence            349999987   56999999999986655  34432345544433

>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A

Probab=84.59  E-value=1.6  Score=37.93  Aligned_cols=43  Identities=9%  Similarity=0.197  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         305 LQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       305 ~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +....+.+++...  .+|+++++|++|++++++|.|++.++++++
T Consensus        84 v~~yl~~~~~~~~--l~i~~~~~V~~v~~~~~~w~v~~~~~~~~~  126 (203)
T PF13738_consen   84 VLDYLQEYAERFG--LEIRFNTRVESVRRDGDGWTVTTRDGRTIR  126 (203)
T ss_dssp             HHHHHHHHHHHTT--GGEETS--EEEEEEETTTEEEEETTS-EEE
T ss_pred             HHHHHHHHHhhcC--cccccCCEEEEEEEeccEEEEEEEecceee
Confidence            3446666777764  679999999999999999999999996553

...

>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=84.56  E-value=0.74  Score=47.39  Aligned_cols=32  Identities=16%  Similarity=0.101  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG  337 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g  337 (350)
                      ..|+..|.+.+. .|++|+++++|++|..++++
T Consensus       208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~  240 (557)
T PRK12844        208 AALIGRMLEAALAAGVPLWTNTPLTELIVEDGR  240 (557)
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCE
Confidence            447888888777 78999999999999987654

>PRK06370 mercuric reductase; Validated

Probab=84.46  E-value=0.71  Score=46.20  Aligned_cols=34  Identities=18%  Similarity=0.416  Sum_probs=25.9

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEE
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAV  341 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~  341 (350)
                      +.+.+.+.|. .|++|+++++|.+|..+++++.|.
T Consensus       214 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~~v~  248 (463)
T PRK06370        214 VAAAVREILEREGIDVRLNAECIRVERDGDGIAVG  248 (463)
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEE
Confidence            4556666666 789999999999998876665444

>PRK00711 D-amino acid dehydrogenase small subunit; Validated

Probab=84.31  E-value=0.77  Score=44.96  Aligned_cols=41  Identities=12%  Similarity=0.025  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE-EEEeCCC
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV-KAVDQPI  345 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv-~V~~~~G  345 (350)
                      ...++++|++.+. .|++|+++++|++|+.+++++ .|++.++
T Consensus       200 p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~  242 (416)
T PRK00711        200 CQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGG  242 (416)
T ss_pred             HHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCc
Confidence            4468888888887 889999999999999887775 4666655

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=84.31  E-value=0.92  Score=44.11  Aligned_cols=24  Identities=13%  Similarity=0.041  Sum_probs=20.4

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      ++++||++|+   ++|++|+|+|+.+.
T Consensus        14 aG~aGl~~A~~La~~G~~v~liE~~~~   40 (392)
T PRK08773         14 GGVVGAACALALADAGLSVALVEGREP   40 (392)
T ss_pred             cCHHHHHHHHHHhcCCCEEEEEeCCCC
Confidence            4459999997   67999999999875

>PRK07395 L-aspartate oxidase; Provisional

Probab=84.21  E-value=1  Score=46.26  Aligned_cols=28  Identities=11%  Similarity=-0.069  Sum_probs=23.1

Q ss_pred             ehhhHhHhhh--cCCCCEEEEecCCCCCcc
Q psy7666          82 LVIRILCTVL--RISTPITLLESSSRLGGW  109 (350)
Q Consensus        82 ~viaGLaaA~--~~G~~VtVlEa~drvGGR  109 (350)
                      +++|||+||.  ++|.+|+|+|+.+..||.
T Consensus        17 ~G~AGl~AAi~A~~G~~V~lieK~~~~gg~   46 (553)
T PRK07395         17 SGAAGLYAALCLPSHLRVGLITKDTLKTSA   46 (553)
T ss_pred             ccHHHHHHHHHhhcCCCEEEEEccCCCCCc
Confidence            3449999998  349999999999988874

>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases

Probab=84.20  E-value=2.3  Score=41.98  Aligned_cols=51  Identities=20%  Similarity=0.184  Sum_probs=37.0

Q ss_pred             EEEecC-cHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCcee
Q psy7666         298 VWSVEG-GLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQM  348 (350)
Q Consensus       298 ~~~~~G-G~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~  348 (350)
                      -.+|.. -..+++++|.+.+. .|++|+++++|++|..++++ +.|.+.++.++
T Consensus       100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~  153 (409)
T PF03486_consen  100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEY  153 (409)
T ss_dssp             EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEE
T ss_pred             EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccc
Confidence            444553 57779999999998 89999999999999998888 88888555554

; PDB: 2I0Z_A 3V76_A 2GQF_A.

>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=84.16  E-value=1.3  Score=42.86  Aligned_cols=23  Identities=26%  Similarity=0.213  Sum_probs=19.6

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSS  104 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~d  104 (350)
                      ++++||++|.   +.|++|+|+|+.+
T Consensus         9 gG~~Gl~~A~~L~~~G~~v~l~E~~~   34 (374)
T PRK06617          9 CGLSGMLTALSFAQKGIKTTIFESKS   34 (374)
T ss_pred             CCHHHHHHHHHHHcCCCeEEEecCCC
Confidence            4569999997   6799999999875

>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=84.09  E-value=0.94  Score=46.94  Aligned_cols=26  Identities=8%  Similarity=0.024  Sum_probs=21.9

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      ++|||+||.   ++|.+|+|+|+....||
T Consensus        12 G~AGl~AAi~Aa~~G~~V~lieK~~~~~g   40 (589)
T PRK08641         12 GLAGLMATIKAAEAGVHVDLFSLVPVKRS   40 (589)
T ss_pred             hHHHHHHHHHHHHcCCcEEEEEccCCCCC
Confidence            449999987   56999999999987665

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=83.90  E-value=0.78  Score=44.86  Aligned_cols=59  Identities=12%  Similarity=0.065  Sum_probs=34.9

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV  151 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l  151 (350)
                      ++++||++|.   ++|++|+|+|+.+..++....    ....-..|. .+   .+   +-.++++++|+.+++
T Consensus        10 aG~aGl~~A~~L~~~G~~v~viE~~~~~~~~~~~----~~~~~~r~~-~l---~~---~~~~~L~~lGl~~~l   71 (405)
T PRK05714         10 AGMVGSALALALQGSGLEVLLLDGGPLSVKPFDP----QAPFEPRVS-AL---SA---ASQRILERLGAWDGI   71 (405)
T ss_pred             ccHHHHHHHHHHhcCCCEEEEEcCCCcccccccc----CCCCCccch-hh---hH---HHHHHHHHCChhhhh
Confidence            4569999997   679999999998743221110    000001111 11   22   567899999986544

>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional

Probab=83.90  E-value=0.92  Score=43.88  Aligned_cols=25  Identities=12%  Similarity=-0.024  Sum_probs=21.0

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRL  106 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drv  106 (350)
                      +++|||++|.   +.|++|+|+|+.+..
T Consensus        13 gG~aGl~~A~~L~~~G~~v~v~E~~~~~   40 (388)
T PRK07608         13 GGLVGASLALALAQSGLRVALLAPRAPP   40 (388)
T ss_pred             cCHHHHHHHHHHHhCCCeEEEEecCCCc
Confidence            4459999997   679999999998774

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=83.84  E-value=0.71  Score=45.02  Aligned_cols=42  Identities=14%  Similarity=0.236  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH  346 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~  346 (350)
                      ...+.++|.+.+. .|++|+++++|+.|+..++++.|.+.+|.
T Consensus       148 ~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g~  190 (393)
T PRK11728        148 YRAVAEAMAELIQARGGEIRLGAEVTALDEHANGVVVRTTQGE  190 (393)
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeEEEEECCCE
Confidence            4668888888887 78899999999999887777878777663

>TIGR02053 MerA mercuric reductase

Probab=83.75  E-value=0.81  Score=45.74  Aligned_cols=35  Identities=17%  Similarity=0.172  Sum_probs=26.5

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEe
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVD  342 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~  342 (350)
                      +.+.+.+.+. .|++|+++++|++|..+++++.|++
T Consensus       209 ~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~~~~v~~  244 (463)
T TIGR02053       209 ISAAVEEALAEEGIEVVTSAQVKAVSVRGGGKIITV  244 (463)
T ss_pred             HHHHHHHHHHHcCCEEEcCcEEEEEEEcCCEEEEEE
Confidence            4556666666 7899999999999988766655554

This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.

>TIGR02028 ChlP geranylgeranyl reductase

Probab=83.70  E-value=0.9  Score=44.57  Aligned_cols=23  Identities=13%  Similarity=-0.047  Sum_probs=19.3

Q ss_pred             hHhHhhh---cCCCCEEEEecCCCCC
Q psy7666          85 RILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        85 aGLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      ||++||.   ++|++|+|+|+....+
T Consensus        11 AG~~aA~~la~~G~~V~llE~~~~~~   36 (398)
T TIGR02028        11 AGASAAETLASAGIQTFLLERKPDNA   36 (398)
T ss_pred             HHHHHHHHHHhCCCcEEEEecCCCCC
Confidence            9999996   6799999999876543

This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=83.45  E-value=0.79  Score=51.37  Aligned_cols=26  Identities=23%  Similarity=0.351  Sum_probs=23.2

Q ss_pred             hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          85 RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        85 aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      |||+||.   ++|.+|+|+|+.+.+||..
T Consensus       420 AGl~AAi~Aae~Ga~VivlEK~~~~GG~s  448 (1167)
T PTZ00306        420 AGCSAAIEAASCGAQVILLEKEAKLGGNS  448 (1167)
T ss_pred             HHHHHHHHHHHCCCcEEEEEccCCCCCch
Confidence            9999987   5799999999999999964

>PTZ00367 squalene epoxidase; Provisional

Probab=83.39  E-value=1.6  Score=45.08  Aligned_cols=53  Identities=13%  Similarity=0.152  Sum_probs=33.3

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++++|+++|.   ++|++|+|+|+...        ...+.   ..|. .+   .|   +-.+.++++|+.+.+.
T Consensus        41 aGiaGlalA~aLar~G~~V~VlEr~~~--------~~~~r---~~G~-~L---~p---~g~~~L~~LGL~d~l~   96 (567)
T PTZ00367         41 GSIAGPVLAKALSKQGRKVLMLERDLF--------SKPDR---IVGE-LL---QP---GGVNALKELGMEECAE   96 (567)
T ss_pred             CCHHHHHHHHHHHhcCCEEEEEccccc--------cccch---hhhh-hc---CH---HHHHHHHHCCChhhHh
Confidence            3459999987   67999999998641        00010   0111 12   22   5678999999976443

>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=83.37  E-value=1.1  Score=43.43  Aligned_cols=25  Identities=12%  Similarity=0.102  Sum_probs=20.5

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRL  106 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drv  106 (350)
                      ++++||++|.   ++|++|+|+|+.+..
T Consensus        15 aG~~Gl~~A~~L~~~G~~v~liE~~~~~   42 (388)
T PRK07494         15 GGPAGLAAAIALARAGASVALVAPEPPY   42 (388)
T ss_pred             cCHHHHHHHHHHhcCCCeEEEEeCCCCC
Confidence            3459999997   679999999998654

>PRK07588 hypothetical protein; Provisional

Probab=82.88  E-value=2.8  Score=40.74  Aligned_cols=43  Identities=12%  Similarity=0.173  Sum_probs=34.1

Q ss_pred             HHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         307 TIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       307 ~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      .|.+.|.+.+..|++|+++++|++|+.++++|.|++.+|++++
T Consensus       104 ~l~~~L~~~~~~~v~i~~~~~v~~i~~~~~~v~v~~~~g~~~~  146 (391)
T PRK07588        104 DLAAAIYTAIDGQVETIFDDSIATIDEHRDGVRVTFERGTPRD  146 (391)
T ss_pred             HHHHHHHHhhhcCeEEEeCCEEeEEEECCCeEEEEECCCCEEE
Confidence            3555565555545899999999999998889999999998654

>TIGR01377 soxA_mon sarcosine oxidase, monomeric form

Probab=82.73  E-value=0.84  Score=44.01  Aligned_cols=39  Identities=18%  Similarity=0.068  Sum_probs=26.3

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      .+.+.|++.+. .|++++.+++|++|+.+++++.|++.+|
T Consensus       146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~~v~~~~~  185 (380)
T TIGR01377       146 KALRALQELAEAHGATVRDGTKVVEIEPTELLVTVKTTKG  185 (380)
T ss_pred             HHHHHHHHHHHHcCCEEECCCeEEEEEecCCeEEEEeCCC
Confidence            45566665555 5677777778888777666666666555

Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms

>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated

Probab=82.69  E-value=0.96  Score=45.22  Aligned_cols=36  Identities=19%  Similarity=0.167  Sum_probs=27.3

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEe
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVD  342 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~  342 (350)
                      .+.+.+.+.|. .|++|++++.|++|+.++..+.++.
T Consensus       212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~v~~~~  248 (458)
T PRK06912        212 DIAHILREKLENDGVKIFTGAALKGLNSYKKQALFEY  248 (458)
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEcCCEEEEEE
Confidence            35666777776 7899999999999987666565553

>PRK11259 solA N-methyltryptophan oxidase; Provisional

Probab=82.60  E-value=1  Score=43.30  Aligned_cols=40  Identities=13%  Similarity=0.048  Sum_probs=29.5

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH  346 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~  346 (350)
                      .++.++++.+. .|++|+++++|++|..+++++.|++++|.
T Consensus       150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~g~  190 (376)
T PRK11259        150 LAIKAHLRLAREAGAELLFNEPVTAIEADGDGVTVTTADGT  190 (376)
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEeeCCeEEEEeCCCE
Confidence            35555555555 67888888899998887777888877763

>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed

Probab=82.14  E-value=1  Score=46.31  Aligned_cols=33  Identities=27%  Similarity=0.245  Sum_probs=26.7

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV  338 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv  338 (350)
                      ..+...|.+.+. .|++|.++++|++|..++++|
T Consensus       208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v  241 (557)
T PRK07843        208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRV  241 (557)
T ss_pred             HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEE
Confidence            447777877777 789999999999999876653

>PRK13748 putative mercuric reductase; Provisional

Probab=82.11  E-value=0.89  Score=46.64  Aligned_cols=39  Identities=10%  Similarity=0.095  Sum_probs=30.1

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      .+.+.+.+.|. .|++|+++++|++|+.+++++.+.+.++
T Consensus       311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~~v~~~~~  350 (561)
T PRK13748        311 AIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEFVLTTGHG  350 (561)
T ss_pred             HHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEecCC
Confidence            35666777777 7899999999999988766777766554

>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase

Probab=82.09  E-value=0.96  Score=43.67  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=20.7

Q ss_pred             ehhhHhHhhh---cCC-CCEEEEecCCC
Q psy7666          82 LVIRILCTVL---RIS-TPITLLESSSR  105 (350)
Q Consensus        82 ~viaGLaaA~---~~G-~~VtVlEa~dr  105 (350)
                      ++++||++|.   ++| ++|+|+|+.+.
T Consensus         7 aG~aGl~~A~~L~~~G~~~v~v~E~~~~   34 (382)
T TIGR01984         7 GGLVGLSLALALSRLGKIKIALIEANSP   34 (382)
T ss_pred             ccHHHHHHHHHHhcCCCceEEEEeCCCc
Confidence            5669999997   679 99999999865

This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.

>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit

Probab=82.06  E-value=1.2  Score=45.40  Aligned_cols=32  Identities=22%  Similarity=0.378  Sum_probs=25.9

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .+|+||    |||+||.   +.|++|+|+|.  ++||++..
T Consensus       213 ~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~~  251 (515)
T TIGR03140       213 YDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVKD  251 (515)
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCcccc
Confidence            456666    9999997   67999999984  79998763

This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.

>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase

Probab=81.89  E-value=1.3  Score=46.36  Aligned_cols=22  Identities=18%  Similarity=0.107  Sum_probs=19.0

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSS  104 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~d  104 (350)
                      +|+||++|+   +.|++|+|||+..
T Consensus        90 GIaGLalAlaL~r~Gi~V~V~Er~~  114 (668)
T PLN02927         90 GIGGLVFALAAKKKGFDVLVFEKDL  114 (668)
T ss_pred             CHHHHHHHHHHHhcCCeEEEEeccc
Confidence            349999997   6899999999975

>PRK14694 putative mercuric reductase; Provisional

Probab=81.53  E-value=1.4  Score=44.19  Aligned_cols=39  Identities=8%  Similarity=0.145  Sum_probs=30.1

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      .+.+.+.+.+. .|++|++++.|++|+.+++.+.|.+.++
T Consensus       219 ~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~~~v~~~~~  258 (468)
T PRK14694        219 AVGEAIEAAFRREGIEVLKQTQASEVDYNGREFILETNAG  258 (468)
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEEEEEECCC
Confidence            46667777777 7899999999999987766666665544

>PRK06134 putative FAD-binding dehydrogenase; Reviewed

Probab=81.40  E-value=1.1  Score=46.36  Aligned_cols=32  Identities=13%  Similarity=0.024  Sum_probs=26.8

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG  337 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g  337 (350)
                      ..|+++|.+.+. .|++|+++++|++|..++++
T Consensus       217 ~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~  249 (581)
T PRK06134        217 NALVARLLKSAEDLGVRIWESAPARELLREDGR  249 (581)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCE
Confidence            447888888887 89999999999999887664

>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed

Probab=81.31  E-value=1.3  Score=46.50  Aligned_cols=51  Identities=12%  Similarity=0.134  Sum_probs=38.0

Q ss_pred             EEEecCcH---HHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666         298 VWSVEGGL---QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM  348 (350)
Q Consensus       298 ~~~~~GG~---~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~  348 (350)
                      ++.+.+|.   ..++++|.+.+..|++|+.+++|++|+..+++|.|.+.+|..+
T Consensus       397 ~~~p~~G~v~p~~l~~aL~~~a~~Gv~i~~~~~V~~i~~~~~~~~v~t~~g~~~  450 (662)
T PRK01747        397 IFYPQGGWLCPAELCRALLALAGQQLTIHFGHEVARLEREDDGWQLDFAGGTLA  450 (662)
T ss_pred             EEeCCCCeeCHHHHHHHHHHhcccCcEEEeCCEeeEEEEeCCEEEEEECCCcEE
Confidence            44455542   4577777777644689999999999998888888888877654

>PRK08294 phenol 2-monooxygenase; Provisional

Probab=81.06  E-value=2.3  Score=44.51  Aligned_cols=50  Identities=14%  Similarity=0.166  Sum_probs=33.6

Q ss_pred             ehhhHhHhhh---c-CCCCEEEEecCCCC--CcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL---R-ISTPITLLESSSRL--GGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~---~-~G~~VtVlEa~drv--GGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      |+++||++|.   + .|.+|+|+|+++..  .||..               .+   .+   ..+++++.+|+.+.+.
T Consensus        40 AGPaGL~lA~~Lar~~Gi~v~IiE~~~~~~~~grA~---------------gl---~p---rtleiL~~lGl~d~l~   95 (634)
T PRK08294         40 CGPAGLTLAAQLSAFPDITTRIVERKPGRLELGQAD---------------GI---AC---RTMEMFQAFGFAERIL   95 (634)
T ss_pred             CCHHHHHHHHHHhcCCCCcEEEEEcCCCCCCCCeee---------------EE---Ch---HHHHHHHhccchHHHH
Confidence            3449999987   5 49999999987531  12211               12   23   6789999999876543

>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated

Probab=81.00  E-value=3.7  Score=39.88  Aligned_cols=44  Identities=16%  Similarity=0.118  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ..+.+.|.+.+. .|++|+++++|++|+.+++++.|+..+|++++
T Consensus       113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~v~~~~g~~~~  157 (392)
T PRK08773        113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVRLRLDDGRRLE  157 (392)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEEEEECCCCEEE
Confidence            456777777776 78999999999999998888999888887654

>PRK07236 hypothetical protein; Provisional

Probab=80.96  E-value=3.7  Score=39.81  Aligned_cols=45  Identities=13%  Similarity=0.030  Sum_probs=37.5

Q ss_pred             cHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         304 GLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       304 G~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +...+.+.|.+.++ +.+|+++++|++|+.++++|+|++.+|++++
T Consensus        98 ~~~~l~~~L~~~~~-~~~i~~~~~v~~i~~~~~~v~v~~~~g~~~~  142 (386)
T PRK07236         98 SWNVLYRALRAAFP-AERYHLGETLVGFEQDGDRVTARFADGRRET  142 (386)
T ss_pred             CHHHHHHHHHHhCC-CcEEEcCCEEEEEEecCCeEEEEECCCCEEE
Confidence            45667778887775 5689999999999998889999999998765

>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional

Probab=80.94  E-value=3.7  Score=39.89  Aligned_cols=44  Identities=16%  Similarity=0.271  Sum_probs=36.5

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ..+.+.|.+.+. .|++|+.+++|++|+.+++++.|+..+|.+++
T Consensus       111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~  155 (403)
T PRK07333        111 RVLINALRKRAEALGIDLREATSVTDFETRDEGVTVTLSDGSVLE  155 (403)
T ss_pred             HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEEEEEECCCCEEE
Confidence            357777777776 68999999999999998889999988887654

>PRK07804 L-aspartate oxidase; Provisional

Probab=80.88  E-value=1.2  Score=45.71  Aligned_cols=26  Identities=15%  Similarity=0.184  Sum_probs=22.1

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      ++|||+||.   ++|.+|+|+|+....||
T Consensus        25 G~AGl~AAi~aae~G~~VilleK~~~~~g   53 (541)
T PRK07804         25 GVAGLTAALAARRAGRRVLVVTKAALDDG   53 (541)
T ss_pred             cHHHHHHHHHHHHcCCeEEEEEccCCCCC
Confidence            349999987   46999999999988776

>PLN00093 geranylgeranyl diphosphate reductase; Provisional

Probab=80.85  E-value=2  Score=42.93  Aligned_cols=26  Identities=23%  Similarity=0.204  Sum_probs=21.1

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCC
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSS  104 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~d  104 (350)
                      .+|+||    ||++||.   ++|++|+|+|+..
T Consensus        40 ~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~   72 (450)
T PLN00093         40 LRVAVIGGGPAGACAAETLAKGGIETFLIERKL   72 (450)
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence            456665    9999996   6799999999874

>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated

Probab=80.66  E-value=1.3  Score=43.01  Aligned_cols=22  Identities=23%  Similarity=0.265  Sum_probs=18.4

Q ss_pred             ehhhHhHhhh---cC---CCCEEEEecC
Q psy7666          82 LVIRILCTVL---RI---STPITLLESS  103 (350)
Q Consensus        82 ~viaGLaaA~---~~---G~~VtVlEa~  103 (350)
                      +++|||++|+   ++   |++|+|+|+.
T Consensus        11 aG~aGl~~A~~L~~~~~~G~~v~v~E~~   38 (395)
T PRK05732         11 GGMAGATLALALSRLSHGGLPVALIEAF   38 (395)
T ss_pred             cCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence            4459999997   45   9999999995

>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup

Probab=80.65  E-value=1.2  Score=45.77  Aligned_cols=28  Identities=4%  Similarity=-0.045  Sum_probs=23.0

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      +++|||+||+   ++|.+|+|+|+....||.
T Consensus         7 ~G~AGl~AA~~aae~G~~V~lleK~~~~~g~   37 (566)
T TIGR01812         7 AGLAGLRAAVEAAKAGLNTAVISKVYPTRSH   37 (566)
T ss_pred             ccHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence            4459999987   569999999999877664

This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.

>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]

Probab=80.56  E-value=1.2  Score=42.81  Aligned_cols=41  Identities=17%  Similarity=0.036  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhc-CC-CEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666         306 QTIVNTLGEHLS-NK-VEVKMDTTCTNLEFLEKGVKAVDQPIH  346 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g-~~I~l~~~V~~I~~~~~gv~V~~~~G~  346 (350)
                      ..++.++++.+. .| ..+..+++|..+...+..+.|.+.+|.
T Consensus       156 ~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~~~~~v~t~~g~  198 (387)
T COG0665         156 RLLTRALAAAAEELGVVIIEGGTPVTSLERDGRVVGVETDGGT  198 (387)
T ss_pred             HHHHHHHHHHHHhcCCeEEEccceEEEEEecCcEEEEEeCCcc
Confidence            568888888887 66 566779999999885345778888776

>PRK06327 dihydrolipoamide dehydrogenase; Validated

Probab=80.55  E-value=1.3  Score=44.56  Aligned_cols=39  Identities=8%  Similarity=0.215  Sum_probs=30.1

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCC
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQP  344 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~  344 (350)
                      ..+.+.+.+.|. .|++|++++.|++|+.+++++.|...+
T Consensus       224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~v~~~~  263 (475)
T PRK06327        224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGGKGVSVAYTD  263 (475)
T ss_pred             HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcCCEEEEEEEe
Confidence            446667777777 789999999999999877777666443

>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional

Probab=80.49  E-value=3.8  Score=39.97  Aligned_cols=44  Identities=9%  Similarity=0.049  Sum_probs=36.7

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ..+.+.|.+.+. .|++|+.+++|++|+.++++|.|+..+|++++
T Consensus       112 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v~v~~~~g~~~~  156 (405)
T PRK05714        112 RVVQDALLERLHDSDIGLLANARLEQMRRSGDDWLLTLADGRQLR  156 (405)
T ss_pred             HHHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeEEEEECCCCEEE
Confidence            356677777776 67899999999999998889999988887665

>PRK11728 hydroxyglutarate oxidase; Provisional

Probab=80.46  E-value=4.3  Score=39.49  Aligned_cols=31  Identities=23%  Similarity=0.088  Sum_probs=24.7

Q ss_pred             ehhhHhHhhh---cC--CCCEEEEecCCCCCcceEE
Q psy7666          82 LVIRILCTVL---RI--STPITLLESSSRLGGWVRS  112 (350)
Q Consensus        82 ~viaGLaaA~---~~--G~~VtVlEa~drvGGRi~T  112 (350)
                      ++|+|+++|+   ++  |++|+|+|+.+.+|+....
T Consensus        10 gGi~G~s~A~~La~~~~g~~V~llE~~~~~~~~aS~   45 (393)
T PRK11728         10 GGIVGLSTAMQLQERYPGARIAVLEKESGPARHQTG   45 (393)
T ss_pred             CcHHHHHHHHHHHHhCCCCeEEEEeCCCcccccccc
Confidence            4569999998   45  9999999999888775433

>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed

Probab=80.43  E-value=1.3  Score=45.77  Aligned_cols=26  Identities=4%  Similarity=-0.051  Sum_probs=21.8

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      ++|||+||.   ++|.+|+|+|+....||
T Consensus        14 G~AGl~AAl~Aae~G~~V~lveK~~~~~g   42 (566)
T PRK06452         14 GLAGLMSAHEIASAGFKVAVISKVFPTRS   42 (566)
T ss_pred             cHHHHHHHHHHHHCCCcEEEEEccCCCCC
Confidence            349999998   46999999999987666

>PTZ00052 thioredoxin reductase; Provisional

Probab=80.34  E-value=1.2  Score=45.04  Aligned_cols=41  Identities=10%  Similarity=-0.005  Sum_probs=31.4

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM  348 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~  348 (350)
                      +.+.+.+.|. .|+++++++.|++|...++++.|...+|+++
T Consensus       224 ~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~g~~i  265 (499)
T PTZ00052        224 CSEKVVEYMKEQGTLFLEGVVPINIEKMDDKIKVLFSDGTTE  265 (499)
T ss_pred             HHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeEEEEECCCCEE
Confidence            4566677776 7899999999999987666677777777654

>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364

Probab=80.17  E-value=1.4  Score=42.40  Aligned_cols=24  Identities=33%  Similarity=0.301  Sum_probs=20.0

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      ++|+|+++|+   ++|++|+|+|+...
T Consensus         8 ~Gi~G~s~A~~L~~~G~~V~vle~~~~   34 (365)
T TIGR03364         8 AGILGLAHAYAAARRGLSVTVIERSSR   34 (365)
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence            4569999998   57999999999754

This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.

>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ

Probab=80.11  E-value=1.4  Score=43.64  Aligned_cols=29  Identities=31%  Similarity=0.489  Sum_probs=23.4

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCC--CCcce
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSR--LGGWV  110 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~dr--vGGRi  110 (350)
                      +.+|||+||+   ++|.+|+|+|+.+.  .||-.
T Consensus         4 ~G~AGl~AA~~Aa~~Ga~V~vlEK~~~~~~Gg~s   37 (432)
T TIGR02485         4 GGLAGLCAAIEARRAGASVLLLEAAPRARRGGNA   37 (432)
T ss_pred             ccHHHHHHHHHHHhCCCcEEEEeCCCCCcCCcCc
Confidence            5679999987   57999999999884  56643

CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	350
3nks_A	477	Structure Of Human Protoporphyrinogen Ix Oxidase Le		6e-49
3i6d_A	470	Crystal Structure Of Ppo From Bacillus Subtilis Wit		1e-14
1sez_A	504	Crystal Structure Of Protoporphyrinogen Ix Oxidase		2e-14
2ivd_A	478	Structure Of Protoporphyrinogen Oxidase From Myxoco		1e-12
3lov_A	475	Crystal Structure Of Putative Protoporphyrinogen Ox		3e-05

>pdb|3NKS|A Chain A, Structure Of Human Protoporphyrinogen Ix Oxidase Length = 477

Iteration: 1
 Score =  191 bits (485), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 95/224 (42%), Positives = 137/224 (61%), Gaps = 7/224 (3%)
Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           + L+ESS RLGGW+RSV+ P G IFE GPR IRP G LGA TL LV +LGL  +V+P+  
Sbjct: 30  VVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRG 89
Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
            HP AQNR +YV   LH LP+    L +   PFSKPL ++ L +LT     + DE+++ F
Sbjct: 90  DHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETVHSF 149
Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEM-MSK 275
             RR G EVA  A+ S+  G+ AG+++++S+      LF+ EQ H  ++ G +     + 
Sbjct: 150 AQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGAGRTP 209
Query: 276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
           +PD      S L R++  E+WS WS+ GGL+ +   L  HL+++
Sbjct: 210 QPD------SALIRQALAERWSQWSLRGGLEMLPQALETHLTSR 247

>pdb|3I6D|A Chain A, Crystal Structure Of Ppo From Bacillus Subtilis With Af Length = 470

Iteration: 1
 Score = 77.4 bits (189), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 117/228 (51%), Gaps = 27/228 (11%)
Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           +TL+E+S R+GG +++V+  +G I E+GP +   + +   +  +LV+DLGL   ++    
Sbjct: 37  LTLVEASPRVGGKIQTVKK-DGYIIERGPDSFLERKK---SAPQLVKDLGLEHLLV---- 88
Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTH-SPFSKPLIFSI-------LHDLTTKTVPK 208
           ++ T Q+ ++ VN+ LH +P        T  +PF    +FS+       +  +   +  K
Sbjct: 89  NNATGQSYVL-VNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTK 147
Query: 209 SDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA 268
            D+S+ +F  RR G EV +  +  ++ GI AGD  K+S+     + ++ EQ H  +I G 
Sbjct: 148 DDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILG- 206
Query: 269 IKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL 316
              M   RP  SG ++    ++ + +  S      GLQT+V  + + L
Sbjct: 207 ---MKKTRPQGSG-QQLTAKKQGQFQTLST-----GLQTLVEEIEKQL 245

>pdb|1SEZ|A Chain A, Crystal Structure Of Protoporphyrinogen Ix Oxidase Length = 504

Iteration: 1
 Score = 76.6 bits (187), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 112/245 (45%), Gaps = 23/245 (9%)
Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           +T+ E+  + GG +RSV S +GLI+++G  T         +   L++ LGL ++      
Sbjct: 39  VTVFEAEGKAGGKLRSV-SQDGLIWDEGANTXTESE---GDVTFLIDSLGLREK-----Q 89
Query: 157 SHPTAQN-RLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKT-----VPKSD 210
             P +QN R I  N     LPSN   L K++   +   +  +L  +  K      V  S 
Sbjct: 90  QFPLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQXLLEPILWKNKKLSQVSDSH 149
Query: 211 ESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIK 270
           ES+  F  R FG EV DY +   + G C GD   +S +    +L+ LE+  G VI GAI+
Sbjct: 150 ESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSXHHSFPELWNLEKRFGSVILGAIR 209
Query: 271 EMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS------NKVEVKM 324
             +S + +           + R  +   +S  GG QT+ + + + L       N   +++
Sbjct: 210 SKLSPKNEKKQGPPKTSANKKR--QRGSFSFLGGXQTLTDAICKDLREDELRLNSRVLEL 267
Query: 325 DTTCT 329
             +CT
Sbjct: 268 SCSCT 272

>pdb|2IVD|A Chain A, Structure Of Protoporphyrinogen Oxidase From Myxococcus Xanthus With Acifluorfen Length = 478

Iteration: 1
 Score = 70.5 bits (171), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 105/243 (43%), Gaps = 41/243 (16%)
Query: 94  STPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTI---RPKGRLGANTLKLVEDLGLADQ 150
            T   LLESS+RLGG V    +  G + E+GP +     P  R  A  L L   +  AD 
Sbjct: 39  GTDAVLLESSARLGGAV-GTHALAGYLVEQGPNSFLDREPATRALAAALNLEGRIRAAD- 96
Query: 151 VIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHS-PFSKPLIFSILHDLTTKTVPKS 209
                   P A+ R +Y   +L  +P++  +   +   P    L   +  +L ++  P+ 
Sbjct: 97  --------PAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARL--RVAGELFSRRAPEG 146
Query: 210 -DESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA 268
            DES+  F  R  G       + ++  GI AGD +++SV      L ++E+ H  +I GA
Sbjct: 147 VDESLAAFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGA 206
Query: 269 IKEMMSKR---------PDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK 319
           I+   ++R         P LSG               ++ + +GGLQ +++ L   L + 
Sbjct: 207 IRAQKAQRQAALPAGTAPKLSG---------------ALSTFDGGLQVLIDALAASLGDA 251
Query: 320 VEV 322
             V
Sbjct: 252 AHV 254

>pdb|3LOV|A Chain A, Crystal Structure Of Putative Protoporphyrinogen Oxidase (Yp_001813199.1) From Exiguobacterium Sp. 255-15 At 2.06 A Resolution Length = 475

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 20/182 (10%)
Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           ITLLE+  RLGG V + +  +G   E+GP +   +  +  +   L+E +GL ++++   +
Sbjct: 32  ITLLEAGERLGGKVATYRE-DGFTIERGPDSYVARKHILTD---LIEAIGLGEKLVRNNT 87
Query: 157 SHPTAQNRLIYVNKKLHKLPSNF-------FSLFKTHSPFS----KPLIFSILHDLTTKT 205
           S        I     LH +P            LF+  +  +    + +   +LH   +  
Sbjct: 88  SQA-----FILDTGGLHPIPKGAVXGIPTDLDLFRQTTLLTEEEKQEVADLLLHPSDSLR 142
Query: 206 VPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVI 265
           +P+ D  + +++  R G  + +  +  ++ GI AG+  + S      +    EQ  G + 
Sbjct: 143 IPEQDIPLGEYLRPRLGDALVEKLIEPLLSGIYAGNIDQXSTFATYPQFVANEQKAGSLF 202
Query: 266 KG 267
           +G
Sbjct: 203 EG 204

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	350
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	7e-66
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	2e-54
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	1e-51
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	6e-50
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	1e-46
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	1e-20
3utf_A	513	UDP-galactopyranose mutase; nucleotide binding, fl	1e-13
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	2e-07
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-05
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	6e-04

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens} Length = 477

 Score =  214 bits (546), Expect = 7e-66
 Identities = 98/260 (37%), Positives = 141/260 (54%), Gaps = 6/260 (2%)

Query: 91  LRISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQ 150
                 + L+ESS RLGGW+RSV+ P G IFE GPR IRP G LGA TL LV +LGL  +
Sbjct: 24  APCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSE 83

Query: 151 VIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSD 210
           V+P+   HP AQNR +YV   LH LP+    L +   PFSKPL ++ L +LT     + D
Sbjct: 84  VLPVRGDHPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPD 143

Query: 211 ESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIK 270
           E+++ F  RR G EVA  A+ S+  G+ AG+++++S+      LF+ EQ H  ++ G + 
Sbjct: 144 ETVHSFAQRRLGPEVASLAMDSLCRGVFAGNSRELSIRSCFPSLFQAEQTHRSILLGLLL 203

Query: 271 EMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNK-VEVKMDTTCT 329
                        +S L R++  E+WS WS+ GGL+ +   L  HL+++ V V       
Sbjct: 204 GAGRTPQ-----PDSALIRQALAERWSQWSLRGGLEMLPQALETHLTSRGVSVLRGQPVC 258

Query: 330 NLEFLEKGVKAVDQPIHQMT 349
            L    +G   V      + 
Sbjct: 259 GLSLQAEGRWKVSLRDSSLE 278

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A* Length = 478

 Score =  184 bits (469), Expect = 2e-54
 Identities = 54/247 (21%), Positives = 102/247 (41%), Gaps = 17/247 (6%)

Query: 96  PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
              LLESS+RLGG V +     G + E+GP +   +      T  L   L L  ++    
Sbjct: 41  DAVLLESSARLGGAVGTHAL-AGYLVEQGPNSFLDREP---ATRALAAALNLEGRIRA-- 94

Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTT-KTVPKSDESIY 214
            + P A+ R +Y   +L  +P++  +   +           +  +L + +     DES+ 
Sbjct: 95  -ADPAAKRRYVYTRGRLRSVPASPPAFLAS-DILPLGARLRVAGELFSRRAPEGVDESLA 152

Query: 215 DFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMS 274
            F  R  G       + ++  GI AGD +++SV      L ++E+ H  +I GAI+   +
Sbjct: 153 AFGRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKA 212

Query: 275 KRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFL 334
           +R        +     +     ++ + +GGLQ +++ L   L       +      L   
Sbjct: 213 QRQA------ALPAGTAPKLSGALSTFDGGLQVLIDALAASL--GDAAHVGARVEGLARE 264

Query: 335 EKGVKAV 341
           + G + +
Sbjct: 265 DGGWRLI 271

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis} Length = 470

 Score =  177 bits (449), Expect = 1e-51
 Identities = 61/261 (23%), Positives = 113/261 (43%), Gaps = 28/261 (10%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           +TL+E+S R+GG +++V+  +G I E+GP +   + +   +  +LV+DLGL   ++    
Sbjct: 37  LTLVEASPRVGGKIQTVKK-DGYIIERGPDSFLERKK---SAPQLVKDLGLEHLLV---- 88

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTH-SPFSKPLIFSI-------LHDLTTKTVPK 208
            +       + VN+ LH +P        T  +PF    +FS+       +  +   +  K
Sbjct: 89  -NNATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTK 147

Query: 209 SDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA 268
            D+S+ +F  RR G EV +  +  ++ GI AGD  K+S+     + ++ EQ H  +I G 
Sbjct: 148 DDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGM 207

Query: 269 IKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTC 328
            K                  + +  ++    ++  GLQT+V  + + L    +V   T  
Sbjct: 208 KKTRPQGSGQ----------QLTAKKQGQFQTLSTGLQTLVEEIEKQLKL-TKVYKGTKV 256

Query: 329 TNLEFLEKGVKAVDQPIHQMT 349
           T L                + 
Sbjct: 257 TKLSHSGSCYSLELDNGVTLD 277

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5 Length = 504

 Score =  173 bits (439), Expect = 6e-50
 Identities = 65/253 (25%), Positives = 116/253 (45%), Gaps = 16/253 (6%)

Query: 96  PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
            +T+ E+  + GG +RSV   +GLI+++G  T+        +   L++ LGL ++     
Sbjct: 38  NVTVFEAEGKAGGKLRSVSQ-DGLIWDEGANTMTESE---GDVTFLIDSLGLREKQQFPL 93

Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKT-----VPKSD 210
           S +     R I  N     LPSN   L K++   +   +  +L  +  K      V  S 
Sbjct: 94  SQN----KRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSH 149

Query: 211 ESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIK 270
           ES+  F  R FG EV DY +   + G C GD   +S++    +L+ LE+  G VI GAI+
Sbjct: 150 ESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIR 209

Query: 271 EMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTN 330
             +S +      +       ++  +   +S  GG+QT+ + + + L  + E+++++    
Sbjct: 210 SKLSPKN--EKKQGPPKTSANKKRQRGSFSFLGGMQTLTDAICKDLR-EDELRLNSRVLE 266

Query: 331 LEFLEKGVKAVDQ 343
           L        A+D 
Sbjct: 267 LSCSCTEDSAIDS 279

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum} Length = 475

 Score =  164 bits (415), Expect = 1e-46
 Identities = 48/249 (19%), Positives = 99/249 (39%), Gaps = 28/249 (11%)

Query: 96  PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
            ITLLE+  RLGG V + +  +G   E+GP +   +         L+E +GL ++++   
Sbjct: 31  NITLLEAGERLGGKVATYR-EDGFTIERGPDSYVARKH---ILTDLIEAIGLGEKLV--- 83

Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTH-SPFSKPLIFS----------ILHDLTTK 204
                     I     LH +P        T    F +  + +          +LH   + 
Sbjct: 84  --RNNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQTTLLTEEEKQEVADLLLHPSDSL 141

Query: 205 TVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGV 264
            +P+ D  + +++  R G  + +  +  ++ GI AG+  ++S      +    EQ  G +
Sbjct: 142 RIPEQDIPLGEYLRPRLGDALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSL 201

Query: 265 IKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKM 324
            +G        +         +  + +        S+E GL++++  L E L  + E+++
Sbjct: 202 FEGMRLMRPLDQL-------PQTPQTTIKATGQFLSLETGLESLIERLEEVLE-RSEIRL 253

Query: 325 DTTCTNLEF 333
           +T    +  
Sbjct: 254 ETPLLAISR 262

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A* Length = 484

 Score = 91.5 bits (226), Expect = 1e-20
 Identities = 27/254 (10%), Positives = 72/254 (28%), Gaps = 30/254 (11%)

Query: 96  PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
              L E +   GG  RS     G  ++ G   I    +       +++       V+   
Sbjct: 35  NWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQY---FDDVMDWAVQGWNVLQ-- 89

Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYD 215
                 +   ++V  +    P              +      L     +T  +   +  +
Sbjct: 90  ------RESWVWVRGRWVPYPFQN--NIHRLPEQDRKRCLDELVRSHARTYTEPPNNFEE 141

Query: 216 FVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSK 275
             +R+FG  +AD  +      + A     +S  ++  ++  ++     + +   +    +
Sbjct: 142 SFTRQFGEGIADIFMRPYNFKVWAVPPCLMSTEWVEERVAPVDL--ERIRRNIQEN---R 196

Query: 276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLE 335
                G   +  +              GG   I   + E L ++ ++  ++    +    
Sbjct: 197 DDLGWGPNATFRF-----------PQRGGTGIIYQAIKEKLPSE-KLTFNSGFQAIAIDA 244

Query: 336 KGVKAVDQPIHQMT 349
                       ++
Sbjct: 245 DAKTITFSNGEVVS 258

>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine dinucleotide BIND isomerase; HET: FDA; 2.25A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A* Length = 513

 Score = 70.7 bits (172), Expect = 1e-13
 Identities = 31/249 (12%), Positives = 68/249 (27%), Gaps = 29/249 (11%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
             +++S+   GG   +  +PEG +++ G   I    +        +++    +       
Sbjct: 37  WMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYK---YFDDCLDEALPKEDDW---- 89

Query: 157 SHPTAQNRLIYVNKKLHKLPS--NFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIY 214
            +   +   +    +    P   N   L K         +      L  +      ++  
Sbjct: 90  -YTHQRISYVRCQGQWVPYPFQNNISMLPKEEQVKCIDGMIDAA--LEARVANTKPKTFD 146

Query: 215 DFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMS 274
           +++ R  G+ +AD  +      + A    K+   +L  ++         V    I    +
Sbjct: 147 EWIVRMMGTGIADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNL--KAVTTNVILGKTA 204

Query: 275 KRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEF 333
                                   +   GG   I   +   L   K         T +  
Sbjct: 205 G--------------NWGPNATFRFPARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNA 250

Query: 334 LEKGVKAVD 342
             K V   D
Sbjct: 251 NNKTVTLQD 259

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A* Length = 424

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 26/244 (10%), Positives = 60/244 (24%), Gaps = 40/244 (16%)

Query: 96  PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
             T+LE +  +GG   S     G  +E G     P         ++++  G       + 
Sbjct: 32  DYTILERTDHVGGKCHSPNY-HGRRYEMGAIMGVPSYD---TIQEIMDRTGDKVDGPKLR 87

Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSD-ESIY 214
                    +    K   + P    +  +               +     V +       
Sbjct: 88  REFLHEDGEIYVPEKDPVRGP-QVMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFD 146

Query: 215 DFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMS 274
           +F++        D    +       G    +   +++ K  +   +             +
Sbjct: 147 EFLALNGCEAARDL-WINPFTAFGYGHFDNVPAAYVL-KYLDFVTM----------MSFA 194

Query: 275 KRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFL 334
           K                      +W+   G Q +   L   L  +   + +   T +   
Sbjct: 195 KGD--------------------LWTWADGTQAMFEHLNATL--EHPAERNVDITRITRE 232

Query: 335 EKGV 338
           +  V
Sbjct: 233 DGKV 236

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus} Length = 421

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 36/246 (14%), Positives = 74/246 (30%), Gaps = 47/246 (19%)

Query: 98  TLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS 157
            +LE S+ +GG   ++   +G     G   + P G        L+  LG   +++     
Sbjct: 27  IVLEKSAMIGGRFTNLPY-KGFQLSTGALHMIPHG-EDGPLAHLLRILGAKVEIVNS--- 81

Query: 158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFV 217
           +P  +   I    K+       +      S   K     +L ++    +PK +    +++
Sbjct: 82  NPKGK---ILWEGKIFHYR-ESWKFL---SVKEKAKALKLLAEIRMNKLPKEEIPADEWI 134

Query: 218 SRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRP 277
             + G      +V     G                               A    +S   
Sbjct: 135 KEKIGENEFLLSVLESFAGW------------------------------ADSVSLSDLT 164

Query: 278 DLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHL-SNKVEVKMDTTCTNLEFLEK 336
            L   +      R+ +       + GG + +++ L   +  NK ++        +   EK
Sbjct: 165 ALELAK----EIRAALRWGGPGLIRGGCKAVIDELERIIMENKGKILTRKEVVEINIEEK 220

Query: 337 GVKAVD 342
            V   D
Sbjct: 221 KVYTRD 226

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 9e-05
 Identities = 48/371 (12%), Positives = 114/371 (30%), Gaps = 124/371 (33%)

Query: 55  YLSFKFQDCHCETSIQKRPFPPDLLLLLVIRILCTVLR----------ISTPITLLESSS 104
           +L+ K    +C +        P+ +L ++ + L   +            +  + +    +
Sbjct: 186 WLNLK----NCNS--------PETVLEMLQK-LLYQIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 105 RLGGWVRSVQSPEGLIF---EKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTA 161
            L   ++S      L+     +  +       L    L       + D +   T++H + 
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 162 QNRLI-------------YVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPK 208
            +  +             Y++ +   LP     +  T+     P   SI+          
Sbjct: 292 DHHSMTLTPDEVKSLLLKYLDCRPQDLPR---EVLTTN-----PRRLSII---------- 333

Query: 209 SDESIYDFVSR--RFGSEVADYAVSSMICGICAGDAKKISVNFL----MAKLFE------ 256
             ESI D ++    +   V    ++++I         + S+N L      K+F+      
Sbjct: 334 -AESIRDGLATWDNW-KHVNCDKLTTII---------ESSLNVLEPAEYRKMFDRLSVFP 382

Query: 257 ---------LEQLHGGVIKGAIKEMMS---------KRPDLSGYEESELYRRSR------ 292
                    L  +   VIK  +  +++         K+P  S      +Y   +      
Sbjct: 383 PSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENE 442

Query: 293 -------IEKWSV---WSVEGGLQT-----IVNTLGEHLSNKVEVKMDTTCT----NLEF 333
                  ++ +++   +  +  +         + +G HL N    +  T       +  F
Sbjct: 443 YALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 334 LEKGVKAVDQP 344
           LE+ ++     
Sbjct: 503 LEQKIRHDSTA 513

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ... Length = 520

 Score = 40.6 bits (95), Expect = 6e-04
 Identities = 33/257 (12%), Positives = 82/257 (31%), Gaps = 58/257 (22%)

Query: 98  TLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS 157
            +LE+  R+GG   ++++ +    + G   + P        L+L ++LGL       T  
Sbjct: 31  VVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN---RILRLAKELGLE------TYK 81

Query: 158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVP---------- 207
               +  + +V  K +     F  ++   +       +  + D+  +             
Sbjct: 82  VNEVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAE 141

Query: 208 -KSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIK 266
              + ++ + + +   +E A    +  +      +  ++S  +    L+ ++Q  G    
Sbjct: 142 EWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWF---LWYVKQCGG---- 194

Query: 267 GAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDT 326
                       +         R+            GG   +   + + L ++V      
Sbjct: 195 ---------TTRIISTTNGGQERK----------FVGGSGQVSERIMDLLGDRV------ 229

Query: 327 TCTNLEFLEKGVKAVDQ 343
                  LE+ V  +DQ
Sbjct: 230 ------KLERPVIYIDQ 240

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	350
3nks_A	477	Protoporphyrinogen oxidase; FAD containing protein	99.96
2ivd_A	478	PPO, PPOX, protoporphyrinogen oxidase; porphyrin b	99.94
1sez_A	504	Protoporphyrinogen oxidase, mitochondrial; FAD-bin	99.93
3lov_A	475	Protoporphyrinogen oxidase; structural genomics, J	99.92
3i6d_A	470	Protoporphyrinogen oxidase; protein-inhibitor comp	99.92
4gde_A	513	UDP-galactopyranose mutase; flavin adenine dinucle	99.91
3ka7_A	425	Oxidoreductase; structural genomics, PSI-2, protei	99.87
2vvm_A	495	Monoamine oxidase N; FAD, peroxisome, flavoprotein	99.87
1s3e_A	520	Amine oxidase [flavin-containing] B; human monoami	99.86
3nrn_A	421	Uncharacterized protein PF1083; alpha-beta protein	99.86
4dgk_A	501	Phytoene dehydrogenase; the FAD/NAD(P)-binding ros	99.85
4dsg_A	484	UDP-galactopyranose mutase; rossmann fold, flavin	99.82
1v0j_A	399	UDP-galactopyranose mutase; flavoprotein, isomeras	99.81
2yg5_A	453	Putrescine oxidase; oxidoreductase, flavin; HET: F	99.81
2bi7_A	384	UDP-galactopyranose mutase; FAD, flavoprotein, iso	99.8
1i8t_A	367	UDP-galactopyranose mutase; rossman fold, FAD, con	99.79
3hdq_A	397	UDP-galactopyranose mutase; substrate and inhibito	99.78
2b9w_A	424	Putative aminooxidase; isomerase, conjugated linol	99.78
1d5t_A	433	Guanine nucleotide dissociation inhibitor; ultra-h	99.72
1rsg_A	516	FMS1 protein; FAD binding motif, oxidoreductase; H	99.72
3p1w_A	475	Rabgdi protein; GDI RAB, malaria, structural genom	99.71
2bcg_G	453	Secretory pathway GDP dissociation inhibitor; RABG	99.69
3k7m_X	431	6-hydroxy-L-nicotine oxidase; enantiomeric substra	99.68
2e1m_A	376	L-glutamate oxidase; L-amino acid oxidase, FAD, L-	99.64
2jae_A	489	L-amino acid oxidase; oxidoreductase, dimerisation	99.63
1b37_A	472	Protein (polyamine oxidase); flavin-dependent amin	99.6
2iid_A	498	L-amino-acid oxidase; flavoenzyme, FAD binding dom	99.57
4gut_A	776	Lysine-specific histone demethylase 1B; histone de	99.46
2xag_A	852	Lysine-specific histone demethylase 1; amine oxida	99.41
2z3y_A	662	Lysine-specific histone demethylase 1; chromatin,	99.39
3ayj_A	721	Pro-enzyme of L-phenylalanine oxidase; amino acid	99.37
1vg0_A	650	RAB proteins geranylgeranyltransferase component A	99.34
3kkj_A	336	Amine oxidase, flavin-containing; oxidoreductase,	98.51
3qj4_A	342	Renalase; FAD/NAD(P)-binding rossmann fold superfa	98.47
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	97.64
3fpz_A	326	Thiazole biosynthetic enzyme; FAD, mitochondrion,	95.61
2vdc_G	456	Glutamate synthase [NADPH] small chain; oxidoreduc	94.63
3oz2_A	397	Digeranylgeranylglycerophospholipid reductase; str	93.75
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	93.57
3k30_A	690	Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi	93.51
3lzw_A	332	Ferredoxin--NADP reductase 2; ferredoxin reductase	93.45
4gcm_A	312	TRXR, thioredoxin reductase; FAD/NAD-linked reduct	93.41
3itj_A	338	Thioredoxin reductase 1; disulfide B flavoprotein,	93.33
1o94_A	729	Tmadh, trimethylamine dehydrogenase; electron tran	93.09
3urh_A	491	Dihydrolipoyl dehydrogenase; PSI-biology, structur	92.7
3dme_A	369	Conserved exported protein; structural genomics, P	92.69
2gv8_A	447	Monooxygenase; FMO, FAD, NADPH, cofactor complex,	92.69
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	92.56
3r9u_A	315	Thioredoxin reductase; structural genomics, center	92.54
2zbw_A	335	Thioredoxin reductase; redox protein, oxidoreducta	92.49
3rp8_A	407	Flavoprotein monooxygenase; FAD-binding protein, o	92.45
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	92.34
3l8k_A	466	Dihydrolipoyl dehydrogenase; redox-active center,	92.16
4ap3_A	549	Steroid monooxygenase; oxidoreductase, baeyer-vill	92.01
3ab1_A	360	Ferredoxin--NADP reductase; oxidoreductase, electr	91.83
1mo9_A	523	ORF3; nucleotide binding motifs, nucleotide bindin	91.82
4a9w_A	357	Monooxygenase; baeyer-villiger, FAD, oxidoreductas	91.8
2xve_A	464	Flavin-containing monooxygenase; oxidoreductase; H	91.75
4at0_A	510	3-ketosteroid-delta4-5alpha-dehydrogenase; oxidore	91.72
4hb9_A	412	Similarities with probable monooxygenase; flavin,	91.67
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	91.61
3o0h_A	484	Glutathione reductase; ssgcid, structur genomics,	91.59
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	91.49
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	91.46
2xdo_A	398	TETX2 protein; tetracycline degradation, tigecycli	91.41
1y0p_A	571	Fumarate reductase flavoprotein subunit; flavocyto	91.28
3f8d_A	323	Thioredoxin reductase (TRXB-3); redox protein, nuc	91.28
3dje_A	438	Fructosyl amine: oxygen oxidoreductase; fructosyl-	91.18
4dna_A	463	Probable glutathione reductase; structural genomic	91.15
2vou_A	397	2,6-dihydroxypyridine hydroxylase; oxidoreductase,	91.12
4a5l_A	314	Thioredoxin reductase; oxidoreductase, redox metab	91.01
2qae_A	468	Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystin	90.92
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	90.84
1yvv_A	336	Amine oxidase, flavin-containing; oxidoreductase,	90.76
2gqf_A	401	Hypothetical protein HI0933; structural genomics,	90.73
2q7v_A	325	Thioredoxin reductase; rossman fold, FAD, flavopro	90.64
1rp0_A	284	ARA6, thiazole biosynthetic enzyme; protein ligand	90.59
1w4x_A	542	Phenylacetone monooxygenase; baeyer-villiger, FAD;	90.53
3cty_A	319	Thioredoxin reductase; FAD, oxidoreductase, flavin	90.53
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	90.45
3cgv_A	397	Geranylgeranyl reductase related protein; NP_39399	90.4
3ps9_A	676	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	90.13
1zmd_A	474	Dihydrolipoyl dehydrogenase; lipoamide dehydrogena	90.07
1qo8_A	566	Flavocytochrome C3 fumarate reductase; oxidoreduct	90.05
3gwf_A	540	Cyclohexanone monooxygenase; flavoprotein biocatal	90.02
1dxl_A	470	Dihydrolipoamide dehydrogenase; oxidoreductase, mu	89.98
2yqu_A	455	2-oxoglutarate dehydrogenase E3 component; lipoami	89.71
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	89.68
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	89.6
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	89.49
3pvc_A	689	TRNA 5-methylaminomethyl-2-thiouridine biosynthes	89.35
1v59_A	478	Dihydrolipoamide dehydrogenase; 2-oxoacid dehydrog	89.26
2qa1_A	500	PGAE, polyketide oxygenase PGAE; FAD, angucycline,	89.25
3nyc_A	381	D-arginine dehydrogenase; FAD, imino-arginine, oxi	89.25
4fk1_A	304	Putative thioredoxin reductase; structural genomic	89.24
3uox_A	545	Otemo; baeyer-villiger monooxygenase, oxidoreducta	89.1
2gag_A	965	Heterotetrameric sarcosine oxidase alpha-subunit;	89.08
3d1c_A	369	Flavin-containing putative monooxygenase; NP_37310	88.97
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	88.9
1ojt_A	482	Surface protein; redox-active center, glycolysis,	88.84
2gjc_A	326	Thiazole biosynthetic enzyme, mitochondrial; gluta	88.79
3qfa_A	519	Thioredoxin reductase 1, cytoplasmic; protein-prot	88.78
1lvl_A	458	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	88.44
3c4a_A	381	Probable tryptophan hydroxylase VIOD; alpha-beta p	88.36
1vdc_A	333	NTR, NADPH dependent thioredoxin reductase; hypoth	88.35
2qa2_A	499	CABE, polyketide oxygenase CABE; FAD, angucycline,	88.33
3lad_A	476	Dihydrolipoamide dehydrogenase; oxidoreductase; HE	88.23
1trb_A	320	Thioredoxin reductase; oxidoreductase(flavoenzyme)	87.85
2q0l_A	311	TRXR, thioredoxin reductase; bacterial thiredoxin	87.81
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	87.81
3dk9_A	478	Grase, GR, glutathione reductase; flavoenzyme, nic	87.74
2gag_B	405	Heterotetrameric sarcosine oxidase beta-subunit; f	87.61
1d4d_A	572	Flavocytochrome C fumarate reductase; oxidoreducta	87.32
2hqm_A	479	GR, grase, glutathione reductase; glutathione redu	87.2
3dme_A	369	Conserved exported protein; structural genomics, P	87.16
3nix_A	421	Flavoprotein/dehydrogenase; structural genomics, P	87.14
2bry_A	497	NEDD9 interacting protein with calponin homology a	87.12
3alj_A	379	2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG;	86.97
1ges_A	450	Glutathione reductase; oxidoreductase(flavoenzyme)	86.96
3fbs_A	297	Oxidoreductase; structural genomics, PSI2, MCSG, p	86.9
3ic9_A	492	Dihydrolipoamide dehydrogenase; APC62701, colwelli	86.87
3dgz_A	488	Thioredoxin reductase 2; oxidoreductase, rossmann,	86.79
2r9z_A	463	Glutathione amide reductase; NAD, FAD, substrate s	86.52
1y56_A	493	Hypothetical protein PH1363; dehydrogenase, protei	86.52
2wpf_A	495	Trypanothione reductase; oxidoreductase, trypanoso	86.5
1fec_A	490	Trypanothione reductase; redox-active center, oxid	86.42
1zk7_A	467	HGII, reductase, mercuric reductase; mercuric ION	86.37
2a87_A	335	TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TL	86.32
3jsk_A	344	Cypbp37 protein; octameric thiazole synthase, bios	86.29
2oln_A	397	NIKD protein; flavoprotein, rossmann fold, oxidore	86.19
2gmh_A	584	Electron transfer flavoprotein-ubiquinone oxidored	86.04
3v76_A	417	Flavoprotein; structural genomics, PSI-biology, NE	86.03
3ics_A	588	Coenzyme A-disulfide reductase; pyridine nucleotid	85.88
3c96_A	410	Flavin-containing monooxygenase; FAD, oxidoreducta	85.66
3axb_A	448	Putative oxidoreductase; dinucleotide-binding fold	85.66
1ebd_A	455	E3BD, dihydrolipoamide dehydrogenase; redox-active	85.53
3i3l_A	591	Alkylhalidase CMLS; flavin-dependent halogenase, c	85.31
2a8x_A	464	Dihydrolipoyl dehydrogenase, E3 component of alpha	85.04
3klj_A	385	NAD(FAD)-dependent dehydrogenase, NIRB-family (N-	84.82
1xdi_A	499	RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno fun	84.54
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	84.5
3oc4_A	452	Oxidoreductase, pyridine nucleotide-disulfide FAM;	84.26
2i0z_A	447	NAD(FAD)-utilizing dehydrogenases; structural geno	84.16
3da1_A	561	Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9	84.16
2qcu_A	501	Aerobic glycerol-3-phosphate dehydrogenase; glycer	84.09
1c0p_A	363	D-amino acid oxidase; alpha-beta-alpha motif, flav	83.94
2eq6_A	464	Pyruvate dehydrogenase complex, dihydrolipoamide d	83.89
3ihm_A	430	Styrene monooxygenase A; rossman fold, anti-parall	83.75
3g3e_A	351	D-amino-acid oxidase; FAD, flavoprotein, oxidoredu	83.63
2wdq_A	588	Succinate dehydrogenase flavoprotein subunit; succ	83.62
1cjc_A	460	Protein (adrenodoxin reductase); flavoenzyme, MAD	83.58
1lqt_A	456	FPRA; NADP+ derivative, oxidoreductase, structural	83.56
3h28_A	430	Sulfide-quinone reductase; monotopic membrane prot	83.29
2gf3_A	389	MSOX, monomeric sarcosine oxidase; flavoprotein ox	83.19
3h8l_A	409	NADH oxidase; membrane protein, complete form, ros	82.99
3e1t_A	512	Halogenase; flavoprotein; HET: FAD; 2.05A {Chondro	82.81
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	82.79
1onf_A	500	GR, grase, glutathione reductase; oxidoreductase;	82.72
2uzz_A	372	N-methyl-L-tryptophan oxidase; N-methyltryptophan	82.71
2x3n_A	399	Probable FAD-dependent monooxygenase; oxidoreducta	82.61
3iwa_A	472	FAD-dependent pyridine nucleotide-disulphide oxido	82.36
1y56_B	382	Sarcosine oxidase; dehydrogenase, protein-protein	82.34
1ryi_A	382	Glycine oxidase; flavoprotein, protein-inhibitor c	82.33
3c4n_A	405	Uncharacterized protein DR_0571; alpha-beta protei	82.18
3dgh_A	483	TRXR-1, thioredoxin reductase 1, mitochondrial; ox	81.94
1chu_A	540	Protein (L-aspartate oxidase); flavoenzyme, NAD bi	81.9
3pl8_A	623	Pyranose 2-oxidase; substrate complex, H167A mutan	81.82
3ihg_A	535	RDME; flavoenzyme, anthracycline, polyketide biosy	81.8
3atr_A	453	Conserved archaeal protein; saturating double bond	81.24
2h88_A	621	Succinate dehydrogenase flavoprotein subunit; comp	80.94
1fl2_A	310	Alkyl hydroperoxide reductase subunit F; reactive	80.61
4g6h_A	502	Rotenone-insensitive NADH-ubiquinone oxidoreducta	80.59
2bs2_A	660	Quinol-fumarate reductase flavoprotein subunit A;	80.44
1k0i_A	394	P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, h	80.39
2r0c_A	549	REBC; flavin adenine dinucleotide, monooxygenase,	80.26
3cgb_A	480	Pyridine nucleotide-disulfide oxidoreductase, CLA;	80.25
3nlc_A	549	Uncharacterized protein VP0956; FAD-binding protei	80.17

>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}

Probab=99.96  E-value=4.1e-28  Score=240.10  Aligned_cols=258  Identities=40%  Similarity=0.698  Sum_probs=193.9

Q ss_pred             hhhHhHhhh---cCCC--CEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666          83 VIRILCTVL---RIST--PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS  157 (350)
Q Consensus        83 viaGLaaA~---~~G~--~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~  157 (350)
                      +|+||+||+   ++|+  +|+||||++++||+++|.+..+|+.+|.|++++.+..+....+.++++++|+.+++.+....
T Consensus        11 GiaGLsaA~~L~~~G~~~~V~vlEa~~~~GG~~~t~~~~~g~~~d~G~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~~~   90 (477)
T 3nks_A           11 GISGLAASYHLSRAPCPPKVVLVESSERLGGWIRSVRGPNGAIFELGPRGIRPAGALGARTLLLVSELGLDSEVLPVRGD   90 (477)
T ss_dssp             BHHHHHHHHHHHTSSSCCEEEEECSSSSSBTTCCEEECTTSCEEESSCCCBCCCHHHHHHHHHHHHHTTCGGGEEEECTT
T ss_pred             cHHHHHHHHHHHhCCCCCcEEEEeCCCCCCCceEEEeccCCeEEEeCCCcccCCCcccHHHHHHHHHcCCcceeeecCCC
Confidence            459999998   6799  99999999999999999874469999999999976421123789999999998766653322


Q ss_pred             CCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhc
Q psy7666         158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGI  237 (350)
Q Consensus       158 ~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~  237 (350)
                      .|.....+++.+|+.+.+|..+..++.....+....+.+.+.+++.+....+++|+.+|++++++..+.+.++.|++.++
T Consensus        91 ~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~~~~~~~  170 (477)
T 3nks_A           91 HPAAQNRFLYVGGALHALPTGLRGLLRPSPPFSKPLFWAGLRELTKPRGKEPDETVHSFAQRRLGPEVASLAMDSLCRGV  170 (477)
T ss_dssp             SHHHHCEEEEETTEEEECCCSSCC---CCTTSCSCSSHHHHTTTTSCCCCSSCCBHHHHHHHHHCHHHHHHTHHHHHHHH
T ss_pred             CchhcceEEEECCEEEECCCChhhcccccchhhhHHHHHHHHhhhcCCCCCCCcCHHHHHHHhhCHHHHHHHHHHHhccc
Confidence            23334578889999999998765554433344433345555555544445678999999999999999999999999999


Q ss_pred             ccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhc
Q psy7666         238 CAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS  317 (350)
Q Consensus       238 ~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~  317 (350)
                      |+.+++++|+.++++.++..+..+++++.+++... .+.+.    .....+.....+...+++++||+++|+++|++.|.
T Consensus       171 ~~~~~~~ls~~~~~~~l~~~e~~~gsl~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~  245 (477)
T 3nks_A          171 FAGNSRELSIRSCFPSLFQAEQTHRSILLGLLLGA-GRTPQ----PDSALIRQALAERWSQWSLRGGLEMLPQALETHLT  245 (477)
T ss_dssp             HSSCTTTBBHHHHCHHHHHHHHHHSCHHHHHHHC------C----CCCHHHHHHHHTTCSEEEETTCTTHHHHHHHHHHH
T ss_pred             ccCCHHHhhHHHHHHHHHHHHHHcCCHHHHHHHhc-ccccC----CchhhhhhhcccCccEEEECCCHHHHHHHHHHHHH
Confidence            99999999999999999988888999888876421 10000    01111111112344689999999999999999998


Q ss_pred             -CCCEEEeCcceeEEEEeCCe-EEEEeCCC
Q psy7666         318 -NKVEVKMDTTCTNLEFLEKG-VKAVDQPI  345 (350)
Q Consensus       318 -~g~~I~l~~~V~~I~~~~~g-v~V~~~~G  345 (350)
                       .|++|++|++|++|+.++++ |.|++.++
T Consensus       246 ~~g~~i~~~~~V~~i~~~~~~~~~v~~~~~  275 (477)
T 3nks_A          246 SRGVSVLRGQPVCGLSLQAEGRWKVSLRDS  275 (477)
T ss_dssp             HTTCEEECSCCCCEEEECGGGCEEEECSSC
T ss_pred             hcCCEEEeCCEEEEEEEcCCceEEEEECCe
Confidence             88999999999999998777 88877544

>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*

Probab=99.94  E-value=1e-25  Score=223.11  Aligned_cols=247  Identities=23%  Similarity=0.342  Sum_probs=188.8

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHP  159 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p  159 (350)
                      +++||+||+   ++|++|+|||+++++|||++|++. +|+.+|.|++++.+.++   .+.++++++|+.+++....   +
T Consensus        25 G~~Gl~aa~~l~~~g~~v~v~E~~~~~GGr~~t~~~-~g~~~~~g~~~~~~~~~---~~~~~~~~~gl~~~~~~~~---~   97 (478)
T 2ivd_A           25 GISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHAL-AGYLVEQGPNSFLDREP---ATRALAAALNLEGRIRAAD---P   97 (478)
T ss_dssp             BHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEEE-TTEEEESSCCCEETTCH---HHHHHHHHTTCGGGEECSC---S
T ss_pred             CHHHHHHHHHHHHCCCCEEEEEcCCCCCceeeeecc-CCeeeecChhhhhhhhH---HHHHHHHHcCCcceeeecC---c
Confidence            349999997   579999999999999999999994 89999999999987665   8999999999976554321   2


Q ss_pred             CCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCC-CCCCCCcHHHHHHHhhChHHHHHHHHHhhhhcc
Q psy7666         160 TAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKT-VPKSDESIYDFVSRRFGSEVADYAVSSMICGIC  238 (350)
Q Consensus       160 ~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~  238 (350)
                      .....+++.+|+.+.+|.....++.. ..+.+.+..+.+.+.+... ...++.|+.+|+++.+++.+.+.++.|++.++|
T Consensus        98 ~~~~~~~~~~g~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~~~~~~  176 (478)
T 2ivd_A           98 AAKRRYVYTRGRLRSVPASPPAFLAS-DILPLGARLRVAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQTGIY  176 (478)
T ss_dssp             SCCCEEEEETTEEEECCCSHHHHHTC-SSSCHHHHHHHHGGGGCCCCCTTCCCBHHHHHHHHTCHHHHHHTHHHHHHHHH
T ss_pred             cccceEEEECCEEEECCCCHHHhccC-CCCCHHHHHHHhhhhhcCCCCCCCCCCHHHHHHHhhCHHHHHHHHHHHhceee
Confidence            23457888899988898876555543 3455556666666665432 235789999999999999999999999999999


Q ss_pred             cCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhccc----ceEEEecCcHHHHHHHHHH
Q psy7666         239 AGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEK----WSVWSVEGGLQTIVNTLGE  314 (350)
Q Consensus       239 ~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~----~~~~~~~GG~~~L~~aLa~  314 (350)
                      +.+++++|+.++++.+...+..+++++.++........+.     . . +   ....    .+.++++||+++|+++|++
T Consensus       177 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~-~---~~~~~~~~~~~~~~~gG~~~l~~~l~~  246 (478)
T 2ivd_A          177 AGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQA-----A-L-P---AGTAPKLSGALSTFDGGLQVLIDALAA  246 (478)
T ss_dssp             CCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC--------------CCSCCCCCCEEEETTCTHHHHHHHHH
T ss_pred             cCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHHhhhccccc-----c-C-c---ccccccccccEEEECCCHHHHHHHHHH
Confidence            9999999999888888877777788766664221000000     0 0 0   0001    4578999999999999999


Q ss_pred             hhcCCCEEEeCcceeEEEEeCCeEEEEe---CCCceec
Q psy7666         315 HLSNKVEVKMDTTCTNLEFLEKGVKAVD---QPIHQMT  349 (350)
Q Consensus       315 ~L~~g~~I~l~~~V~~I~~~~~gv~V~~---~~G~~~~  349 (350)
                      .++  ++|+++++|++|..++++|.|++   .+|++++
T Consensus       247 ~lg--~~i~~~~~V~~i~~~~~~~~v~~~~~~~g~~~~  282 (478)
T 2ivd_A          247 SLG--DAAHVGARVEGLAREDGGWRLIIEEHGRRAELS  282 (478)
T ss_dssp             HHG--GGEESSEEEEEEECC--CCEEEEEETTEEEEEE
T ss_pred             Hhh--hhEEcCCEEEEEEecCCeEEEEEeecCCCceEE
Confidence            995  79999999999999888888887   6776554

>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5

Probab=99.93  E-value=2.7e-25  Score=221.60  Aligned_cols=247  Identities=26%  Similarity=0.417  Sum_probs=181.8

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHP  159 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p  159 (350)
                      +++||+||+   ++|++|+|||+++++|||++|.+ .+|+.+|.|++++++.++   .+.++++++|+.+......    
T Consensus        22 G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~---~~~~~~~~lgl~~~~~~~~----   93 (504)
T 1sez_A           22 GVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEG---DVTFLIDSLGLREKQQFPL----   93 (504)
T ss_dssp             SHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSH---HHHHHHHHTTCGGGEECCS----
T ss_pred             CHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cCCeEEecCCcccccCcH---HHHHHHHHcCCcccceecc----
Confidence            349999997   57999999999999999999999 499999999999987665   8999999999976544311    


Q ss_pred             CCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCC------CCCCCCcHHHHHHHhhChHHHHHHHHHh
Q psy7666         160 TAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKT------VPKSDESIYDFVSRRFGSEVADYAVSSM  233 (350)
Q Consensus       160 ~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~------~~~~~~Sv~~~l~~~~~~~~~~~~~~pl  233 (350)
                      .....+++.+|+.+.+|.+...+... ..+....+.+.+.+.+...      ...+++|+.+|+++++++.+.+.++.|+
T Consensus        94 ~~~~~~~~~~g~~~~~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~  172 (504)
T 1sez_A           94 SQNKRYIARNGTPVLLPSNPIDLIKS-NFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKEVVDYLIDPF  172 (504)
T ss_dssp             SCCCEEEESSSSEEECCSSHHHHHHS-SSSCHHHHHHHHTHHHHC----------CCCBHHHHHHHHHCHHHHHTTHHHH
T ss_pred             CCCceEEEECCeEEECCCCHHHHhcc-ccCCHHHHHHHhHhhhccCcccccccCCCCccHHHHHHHHcCHHHHHHHHHHH
Confidence            12346778899888888775554432 2444444455443333211      1245799999999999999999999999


Q ss_pred             hhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHh--hhcccceEEEecCcHHHHHHH
Q psy7666         234 ICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRR--SRIEKWSVWSVEGGLQTIVNT  311 (350)
Q Consensus       234 ~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~--~~~~~~~~~~~~GG~~~L~~a  311 (350)
                      +.++|+.+++++|+.++++.++.+++.+++++.+++...+......    ....+..  ......+.++++||+++|+++
T Consensus       173 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~GG~~~l~~~  248 (504)
T 1sez_A          173 VAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNEK----KQGPPKTSANKKRQRGSFSFLGGMQTLTDA  248 (504)
T ss_dssp             HHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC--------------CCCSCCSTTCSCBEETTCTHHHHHH
T ss_pred             HccccCCChHHhhHHHHhHHHHHHHHHhCCHHHHHHHhhhcccccc----cccccchhhccccCCceEeeCcHHHHHHHH
Confidence            9999999999999999899999888888888777765432110000    0000000  000122478899999999999


Q ss_pred             HHHhhcCCCEEEeCcceeEEEEeCCe------EEEEeC
Q psy7666         312 LGEHLSNKVEVKMDTTCTNLEFLEKG------VKAVDQ  343 (350)
Q Consensus       312 La~~L~~g~~I~l~~~V~~I~~~~~g------v~V~~~  343 (350)
                      |++.|+ .++|++|++|++|.+++++      |.|++.
T Consensus       249 l~~~l~-~~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~  285 (504)
T 1sez_A          249 ICKDLR-EDELRLNSRVLELSCSCTEDSAIDSWSIISA  285 (504)
T ss_dssp             HHTTSC-TTTEETTCCEEEEEEECSSSSSSCEEEEEEB
T ss_pred             HHhhcc-cceEEcCCeEEEEEecCCCCcccceEEEEEc
Confidence            999984 2689999999999998877      777664

>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: FAD; 2.06A {Exiguobacterium sibiricum}

Probab=99.92  E-value=6.3e-24  Score=210.18  Aligned_cols=247  Identities=21%  Similarity=0.299  Sum_probs=186.4

Q ss_pred             ehhhHhHhhh---cCC--CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCC
Q psy7666          82 LVIRILCTVL---RIS--TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS  156 (350)
Q Consensus        82 ~viaGLaaA~---~~G--~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~  156 (350)
                      ++|+||+||+   ++|  ++|+|||+++++||++.|.+ .+|+.+|.|++++.+.++   .+.++++++|+.+++..   
T Consensus        12 aG~~Gl~~A~~L~~~g~~~~v~v~E~~~~~GG~~~~~~-~~g~~~~~g~~~~~~~~~---~~~~l~~~lg~~~~~~~---   84 (475)
T 3lov_A           12 GGITGLAAAYYAERAFPDLNITLLEAGERLGGKVATYR-EDGFTIERGPDSYVARKH---ILTDLIEAIGLGEKLVR---   84 (475)
T ss_dssp             CBHHHHHHHHHHHHHCTTSEEEEECSSSSSBTTCCEEC-STTCCEESSCCCEETTST---HHHHHHHHTTCGGGEEE---
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEEEECCCCCCceeEEEe-eCCEEEecCchhhhcccH---HHHHHHHHcCCcceEee---
Confidence            3459999998   568  99999999999999999999 599999999999988776   89999999999876553   


Q ss_pred             CCCCCcceEEEeCCeEEECCCCh--------hhhcccCCCCCHHHHHHHHHHhhcCC-C----CCCCCcHHHHHHHhhCh
Q psy7666         157 SHPTAQNRLIYVNKKLHKLPSNF--------FSLFKTHSPFSKPLIFSILHDLTTKT-V----PKSDESIYDFVSRRFGS  223 (350)
Q Consensus       157 ~~p~~~~~~i~~~g~~~~~p~~~--------~~~~~~~~~l~~~~~~~~l~~~~~~~-~----~~~~~Sv~~~l~~~~~~  223 (350)
                        +.....+++.+|+.+.+|...        ..+... ..+...... .+.+++.+. .    ..+++|+.+|++++++.
T Consensus        85 --~~~~~~~~~~~g~~~~~p~~~~~~~p~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~  160 (475)
T 3lov_A           85 --NNTSQAFILDTGGLHPIPKGAVMGIPTDLDLFRQT-TLLTEEEKQ-EVADLLLHPSDSLRIPEQDIPLGEYLRPRLGD  160 (475)
T ss_dssp             --CCCCCEEEEETTEEEECCSSEETTEESCHHHHTTC-SSSCHHHHH-HHHHHHHSCCTTCCCCSSCCBHHHHHHHHHCH
T ss_pred             --cCCCceEEEECCEEEECCCcccccCcCchHHHhhc-cCCChhHHH-HhhCcccCCcccccCCCCCcCHHHHHHHHhCH
Confidence              223457888999998887642        223222 344443333 444444322 1    35789999999999999


Q ss_pred             HHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecC
Q psy7666         224 EVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEG  303 (350)
Q Consensus       224 ~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~G  303 (350)
                      ++.+.++.|++.++|+.+++++|+.+.++.+..++..++++..++...  ...+..  ......|   ...+..++++.|
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~--~~~~~~~---~~~~~~~~~~~~  233 (475)
T 3lov_A          161 ALVEKLIEPLLSGIYAGNIDQMSTFATYPQFVANEQKAGSLFEGMRLM--RPLDQL--PQTPQTT---IKATGQFLSLET  233 (475)
T ss_dssp             HHHHHTHHHHHHGGGCCCTTTSBSTTTCHHHHHHHHHHSSHHHHHHHT--CC-------------------CCSEEEETT
T ss_pred             HHHHHHHHHHhceeecCChHHcCHHHHHHHHHHHHHhcCcHHHHHHHh--cccccc--ccccccc---ccCCCcEEeeCC
Confidence            999999999999999999999999988888888887888887765421  000000  0000000   011345788999


Q ss_pred             cHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666         304 GLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM  348 (350)
Q Consensus       304 G~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~  348 (350)
                      |+++|+++|++.+.. ++|+++++|++|++++++|.|++.+| ++
T Consensus       234 G~~~l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~~~v~~~~g-~~  276 (475)
T 3lov_A          234 GLESLIERLEEVLER-SEIRLETPLLAISREDGRYRLKTDHG-PE  276 (475)
T ss_dssp             CHHHHHHHHHHHCSS-CEEESSCCCCEEEEETTEEEEECTTC-CE
T ss_pred             hHHHHHHHHHhhccC-CEEEcCCeeeEEEEeCCEEEEEECCC-eE
Confidence            999999999999953 69999999999999999999999888 44

>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}

Probab=99.92  E-value=1.4e-24  Score=213.62  Aligned_cols=247  Identities=25%  Similarity=0.371  Sum_probs=169.1

Q ss_pred             hhhHhHhhh---cCC------CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccc
Q psy7666          83 VIRILCTVL---RIS------TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIP  153 (350)
Q Consensus        83 viaGLaaA~---~~G------~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~  153 (350)
                      +|+||+||+   ++|      ++|+||||++++|||+.|.+ .+|+.+|.|++++.+.++   .++++++++|+.+++..
T Consensus        14 GiaGLsaA~~L~~~G~~~~~~~~V~vlEa~~~~GG~~~s~~-~~g~~~d~G~~~~~~~~~---~~~~l~~~lgl~~~~~~   89 (470)
T 3i6d_A           14 GITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVK-KDGYIIERGPDSFLERKK---SAPQLVKDLGLEHLLVN   89 (470)
T ss_dssp             SHHHHHHHHHHHHHHTTTTCSEEEEEECSSSSSCTTCCEEC-CTTCCEESSCCCEETTCT---HHHHHHHHTTCCTTEEE
T ss_pred             CHHHHHHHHHHHHhccccCCCCCEEEEECCCCCCceEEEec-cCCEEeccChhhhhhCCH---HHHHHHHHcCCcceeec
Confidence            349999998   568      99999999999999999999 499999999999988777   89999999999876553


Q ss_pred             cCCCCCCCcceEEEeCCeEEECCCCh-hhhcccC------CCCCHHHHHHHHHHhhcC-CCCCCCCcHHHHHHHhhChHH
Q psy7666         154 ITSSHPTAQNRLIYVNKKLHKLPSNF-FSLFKTH------SPFSKPLIFSILHDLTTK-TVPKSDESIYDFVSRRFGSEV  225 (350)
Q Consensus       154 ~~~~~p~~~~~~i~~~g~~~~~p~~~-~~~~~~~------~~l~~~~~~~~l~~~~~~-~~~~~~~Sv~~~l~~~~~~~~  225 (350)
                           +.....+++.+|+.+.+|... ..++..+      ..+......+.+.+.+.+ ....++.|+.+|+++.++...
T Consensus        90 -----~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~  164 (470)
T 3i6d_A           90 -----NATGQSYVLVNRTLHPMPKGAVMGIPTKIAPFVSTGLFSLSGKARAAMDFILPASKTKDDQSLGEFFRRRVGDEV  164 (470)
T ss_dssp             -----CCCCCEEEECSSCEEECCC---------------------CCSHHHHHHHHSCCCSSSSCCBHHHHHHHHSCHHH
T ss_pred             -----CCCCccEEEECCEEEECCCCcccCCcCchHHhhccCcCCHHHHHHHhcCcccCCCCCCCCcCHHHHHHHhcCHHH
Confidence                 123457888899888887532 1111100      111111122333344332 234578999999999999999


Q ss_pred             HHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcH
Q psy7666         226 ADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGL  305 (350)
Q Consensus       226 ~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~  305 (350)
                      .+.++.|++.++|+.+++++|+...++.+..++..++++..++....  ....     ... .  .......++++.||+
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-----~~~-~--~~~~~~~~~~~~~g~  234 (470)
T 3i6d_A          165 VENLIEPLLSGIYAGDIDKLSLMSTFPQFYQTEQKHRSLILGMKKTR--PQGS-----GQQ-L--TAKKQGQFQTLSTGL  234 (470)
T ss_dssp             HHHTHHHHHHHTTCSCTTTBBHHHHCGGGCC-----------------------------------------EEEETTCT
T ss_pred             HHHhccchhcEEecCCHHHhhHHHHHHHHHHHHHhcCcHHHHHHhhc--cccc-----ccc-c--cccCCceEEEeCChH
Confidence            99999999999999999999998887766555555566555543210  0000     000 0  000123578899999


Q ss_pred             HHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         306 QTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       306 ~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ++|+++|++.+.. ++|+++++|++|++++++|.|++.+|++++
T Consensus       235 ~~l~~~l~~~l~~-~~i~~~~~V~~i~~~~~~~~v~~~~g~~~~  277 (470)
T 3i6d_A          235 QTLVEEIEKQLKL-TKVYKGTKVTKLSHSGSCYSLELDNGVTLD  277 (470)
T ss_dssp             HHHHHHHHHTCCS-EEEECSCCEEEEEECSSSEEEEESSSCEEE
T ss_pred             HHHHHHHHHhcCC-CEEEeCCceEEEEEcCCeEEEEECCCCEEE
Confidence            9999999999953 699999999999999889999999997654

>4gde_A UDP-galactopyranose mutase; flavin adenine dinucleotide binding, nucleotide binding, MUT isomerase; HET: FDA; 2.20A {Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A* 4gdc_A* 4gdd_A* 3utf_A* 3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*

Probab=99.91  E-value=1.2e-23  Score=209.60  Aligned_cols=236  Identities=12%  Similarity=0.127  Sum_probs=163.8

Q ss_pred             ehhhHhHhhh---c-CCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCC-cccccCC
Q psy7666          82 LVIRILCTVL---R-ISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLAD-QVIPITS  156 (350)
Q Consensus        82 ~viaGLaaA~---~-~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~-~l~~~~~  156 (350)
                      |+||||+||+   + .|++|+||||++++||+++|....+|+.+|.|+|+|++.++   .+.+++++++... ++..   
T Consensus        18 aGisGLsaA~~L~k~~G~~V~VlE~~~~~GG~~~T~~~~~G~~~D~G~h~~~~~~~---~v~~l~~e~~~~~~~~~~---   91 (513)
T 4gde_A           18 AGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIFSHYK---YFDDCLDEALPKEDDWYT---   91 (513)
T ss_dssp             CSHHHHHHHHHHHHHCCSCEEEEESSSSCCGGGCEEECTTSCEEESSCCCCCCCBH---HHHHHHHHHSCSGGGEEE---
T ss_pred             CcHHHHHHHHHHHhhCCCCEEEEECCCCCcCCeeeEEecCCEEEEeCceEecCCCH---HHHHHHHHhCCccceeEE---
Confidence            3449999997   3 59999999999999999999753589999999999988876   8999999998754 3332   


Q ss_pred             CCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHH----HHHHhh-cCCCCCCCCcHHHHHHHhhChHHHHHHHH
Q psy7666         157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFS----ILHDLT-TKTVPKSDESIYDFVSRRFGSEVADYAVS  231 (350)
Q Consensus       157 ~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~----~l~~~~-~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~  231 (350)
                         .....+++.+|+.+.+|...  .+.   .+.......    ++.... ......++.|+.+|+.+.+++.+.+.++.
T Consensus        92 ---~~~~~~i~~~g~~~~~p~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~g~~l~~~~~~  163 (513)
T 4gde_A           92 ---HQRISYVRCQGQWVPYPFQN--NIS---MLPKEEQVKCIDGMIDAALEARVANTKPKTFDEWIVRMMGTGIADLFMR  163 (513)
T ss_dssp             ---EECCEEEEETTEEEESSGGG--GGG---GSCHHHHHHHHHHHHHHHHHHHTCCSCCCSHHHHHHHHHHHHHHHHTHH
T ss_pred             ---ecCceEEEECCeEeecchhh--hhh---hcchhhHHHHHHHHHHHHHhhhcccccccCHHHHHHHhhhhhhhhhhcc
Confidence               22457889999998887531  111   111211122    111111 11234567899999999999999999999


Q ss_pred             HhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHH
Q psy7666         232 SMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNT  311 (350)
Q Consensus       232 pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~a  311 (350)
                      |++.++|+.+++++|+.++.+.+.....  .....+...   .....       . +   .......+.++||+++|+++
T Consensus       164 ~~~~~~~~~~~~~ls~~~~~~~~~~~~~--~~~~~~~~~---~~~~~-------~-~---~~~~~~~~~~~gG~~~l~~~  227 (513)
T 4gde_A          164 PYNFKVWAVPTTKMQCAWLGERVAAPNL--KAVTTNVIL---GKTAG-------N-W---GPNATFRFPARGGTGGIWIA  227 (513)
T ss_dssp             HHHHHHHSSCGGGBCSGGGCSSCCCCCH--HHHHHHHHH---TCCCC-------S-C---BTTBEEEEESSSHHHHHHHH
T ss_pred             hhhhhhccCChHHhhHHHHHHhhcccch--hhhhhhhhh---ccccc-------c-c---ccccceeecccCCHHHHHHH
Confidence            9999999999999998776443321000  000111111   01000       0 0   01122345568999999999


Q ss_pred             HHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         312 LGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       312 La~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      |++.|. .|++|++|++|++|..++++  |+..+|++++
T Consensus       228 l~~~l~~~g~~i~~~~~V~~I~~~~~~--v~~~~G~~~~  264 (513)
T 4gde_A          228 VANTLPKEKTRFGEKGKVTKVNANNKT--VTLQDGTTIG  264 (513)
T ss_dssp             HHHTSCGGGEEESGGGCEEEEETTTTE--EEETTSCEEE
T ss_pred             HHHHHHhcCeeeecceEEEEEEccCCE--EEEcCCCEEE
Confidence            999998 88999999999999887665  4567887764

>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}

Probab=99.87  E-value=1.1e-20  Score=183.94  Aligned_cols=216  Identities=12%  Similarity=0.098  Sum_probs=158.8

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      ++|+||+||+   ++|++|+|||+++++||++.++. .+|+.+|.|++++.+... .+.+.++++++|+..++.+.+   
T Consensus         8 aGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~G~~~d~G~~~~~~~~~-~~~~~~l~~~lg~~~~~~~~~---   82 (425)
T 3ka7_A            8 AGLGGLLSAARLSKAGHEVEVFERLPITGGRFTNLS-YKGFQLSSGAFHMLPNGP-GGPLACFLKEVEASVNIVRSE---   82 (425)
T ss_dssp             CBHHHHHHHHHHHHTTCEEEEECSSSSSBTTSSEEE-ETTEEEESSSCSCBTTGG-GSHHHHHHHHTTCCCCEEECC---
T ss_pred             CCHHHHHHHHHHHhCCCceEEEeCCCCCCCceeeec-cCCcEEcCCCceEecCCC-ccHHHHHHHHhCCCceEEecC---
Confidence            3459999998   67999999999999999999999 599999999987754321 338999999999977665521   


Q ss_pred             CCCcceEEEeC-----------CeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCC-CCCCCCcHHHHHHHhhChHHH
Q psy7666         159 PTAQNRLIYVN-----------KKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKT-VPKSDESIYDFVSRRFGSEVA  226 (350)
Q Consensus       159 p~~~~~~i~~~-----------g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~Sv~~~l~~~~~~~~~  226 (350)
                          ..++..+           ++.+.++..    .   ..+...+..++...+.... ...++.|+.+|+++.+++...
T Consensus        83 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~  151 (425)
T 3ka7_A           83 ----MTTVRVPLKKGNPDYVKGFKDISFNDF----P---SLLSYKDRMKIALLIVSTRKNRPSGSSLQAWIKSQVSDEWL  151 (425)
T ss_dssp             ----CCEEEEESSTTCCSSTTCEEEEEGGGG----G---GGSCHHHHHHHHHHHHHTTTSCCCSSBHHHHHHHHCCCHHH
T ss_pred             ----CceEEeecCCCcccccccccceehhhh----h---hhCCHHHHHHHHHHHHhhhhcCCCCCCHHHHHHHhcCCHHH
Confidence                1222221           444443321    1   1234444444444433211 335689999999999999999


Q ss_pred             HHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHH
Q psy7666         227 DYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQ  306 (350)
Q Consensus       227 ~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~  306 (350)
                      +.++.|++..+++.+++++|+..+++.+...           ..                        ..+.+++.||++
T Consensus       152 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~-----------~~------------------------~~~~~~~~gG~~  196 (425)
T 3ka7_A          152 IKFADSFCGWALSLKSDEVPVEEVFEIIENM-----------YR------------------------FGGTGIPEGGCK  196 (425)
T ss_dssp             HHHHHHHHHHHHSSCGGGSBHHHHHHHHHHH-----------HH------------------------HCSCEEETTSHH
T ss_pred             HHHHHHHHHHHhCCCcccchHHHHHHHHHHH-----------Hh------------------------cCCccccCCCHH
Confidence            9999999999999999999987765544321           10                        113577999999


Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEE-EEeCCCceec
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVK-AVDQPIHQMT  349 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~-V~~~~G~~~~  349 (350)
                      .|+++|++.+. .|++|+++++|++|..++++|. |++. |++++
T Consensus       197 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~gv~~~-g~~~~  240 (425)
T 3ka7_A          197 GIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIAD-DRIHD  240 (425)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEET-TEEEE
T ss_pred             HHHHHHHHHHHHcCCEEEECCceeEEEEECCEEEEEEEC-CEEEE
Confidence            99999999998 8999999999999999988876 6664 66554

>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*

Probab=99.87  E-value=5e-21  Score=190.43  Aligned_cols=226  Identities=10%  Similarity=0.058  Sum_probs=157.4

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCCC
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPT  160 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p~  160 (350)
                      +|||+||+   ++|++|+|||+++|+|||++|.+ .+|+.+|+|++|+++.++   +++++++++|+.+++.+.... +.
T Consensus        49 ~aGl~aA~~l~~~g~~v~v~E~~~~~GGr~~t~~-~~g~~~d~G~~~~~~~~~---~~~~~l~~lgl~~~~~~~~~~-~~  123 (495)
T 2vvm_A           49 YCGLTATRDLTVAGFKTLLLEARDRIGGRSWSSN-IDGYPYEMGGTWVHWHQS---HVWREITRYKMHNALSPSFNF-SR  123 (495)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSSBSBTTCCEEE-ETTEEEECSCCCBCTTSH---HHHHHHHHTTCTTCEEESCCC-SS
T ss_pred             HHHHHHHHHHHHCCCCEEEEeCCCCCCCcceecc-cCCeeecCCCeEecCccH---HHHHHHHHcCCcceeeccccc-CC
Confidence            49999997   67999999999999999999999 489999999999988776   899999999997655542100 11


Q ss_pred             CcceEEEeC--CeEEECCCC-hhhhcccCCCCCHHHHHHHHH-------Hh----hcCC-----CCCCCCcHHHHHHHhh
Q psy7666         161 AQNRLIYVN--KKLHKLPSN-FFSLFKTHSPFSKPLIFSILH-------DL----TTKT-----VPKSDESIYDFVSRRF  221 (350)
Q Consensus       161 ~~~~~i~~~--g~~~~~p~~-~~~~~~~~~~l~~~~~~~~l~-------~~----~~~~-----~~~~~~Sv~~~l~~~~  221 (350)
                      ....+++.+  |+.+.+|.. ....+.       ..+..++.       ..    +.+.     ...++.|+.+|+++..
T Consensus       124 ~~~~~~~~~~~g~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~  196 (495)
T 2vvm_A          124 GVNHFQLRTNPTTSTYMTHEAEDELLR-------SALHKFTNVDGTNGRTVLPFPHDMFYVPEFRKYDEMSYSERIDQIR  196 (495)
T ss_dssp             SCCEEEEESSTTCCEEECHHHHHHHHH-------HHHHHHHCSSSSTTTTTCSCTTSTTSSTTHHHHHTSBHHHHHHHHG
T ss_pred             CceEEEecCCCCceeecCHHHHHHHHH-------HHHHHHHccchhhhhhcCCCCCCcccCcchhhhhhhhHHHHHHHhh
Confidence            234566666  665565542 111100       00001111       00    0000     0124689999998763


Q ss_pred             --ChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEE
Q psy7666         222 --GSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVW  299 (350)
Q Consensus       222 --~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~  299 (350)
                        .....+.++.+++..+++.+++++|+..++..+...   .+.. .++..                        ..+.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~---~~~~-~~~~~------------------------~~~~~  248 (495)
T 2vvm_A          197 DELSLNERSSLEAFILLCSGGTLENSSFGEFLHWWAMS---GYTY-QGCMD------------------------CLMSY  248 (495)
T ss_dssp             GGCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHHT---TSSH-HHHHH------------------------HHHSE
T ss_pred             ccCCHHHHHHHHHHHHHhcCCCcchhhHHHHHHHHHHc---CCCH-HHHHh------------------------hhceE
Confidence              334556799999999999999999988776544211   1111 11110                        11357


Q ss_pred             EecCcHHHHHHHHHHhhc-CC-CEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         300 SVEGGLQTIVNTLGEHLS-NK-VEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       300 ~~~GG~~~L~~aLa~~L~-~g-~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ++.||+++|+++|++.+. .| ++|+++++|++|+.++++|.|++.+|++++
T Consensus       249 ~~~gG~~~l~~~l~~~l~~~g~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~  300 (495)
T 2vvm_A          249 KFKDGQSAFARRFWEEAAGTGRLGYVFGCPVRSVVNERDAARVTARDGREFV  300 (495)
T ss_dssp             EETTCHHHHHHHHHHHHHTTTCEEEESSCCEEEEEECSSSEEEEETTCCEEE
T ss_pred             EeCCCHHHHHHHHHHHhhhcCceEEEeCCEEEEEEEcCCEEEEEECCCCEEE
Confidence            799999999999999998 76 899999999999998888999999987554

>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase, inhibitor binding, rasagiline, enantioselectivity, oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens} SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A* 1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A* 2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A* 2v60_A* 2v61_A* 2vrl_A* ...

Probab=99.86  E-value=2.1e-21  Score=194.65  Aligned_cols=228  Identities=14%  Similarity=0.169  Sum_probs=160.6

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      +++|||+||+   ++|++|+|||+++++|||++|.+..+|+.+|+|++++++.++   .++++++++|++.....     
T Consensus        12 aG~aGL~aA~~L~~~G~~V~vlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~lgl~~~~~~-----   83 (520)
T 1s3e_A           12 GGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN---RILRLAKELGLETYKVN-----   83 (520)
T ss_dssp             CBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEECCTTTSCEESSCCEECTTCH---HHHHHHHHTTCCEEECC-----
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEeCCCCCCCceeecccCCCcccccCceEecCCcH---HHHHHHHHcCCcceecc-----
Confidence            3459999997   679999999999999999999994239999999999987654   89999999999653322     


Q ss_pred             CCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHH---HHhhcC------CC-----CCCCCcHHHHHHHhhChH
Q psy7666         159 PTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSIL---HDLTTK------TV-----PKSDESIYDFVSRRFGSE  224 (350)
Q Consensus       159 p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l---~~~~~~------~~-----~~~~~Sv~~~l~~~~~~~  224 (350)
                       .....+++.+|+.+.++..+...   ..+....++.+++   ..+...      +.     ..++.|+.+|+++.+.+.
T Consensus        84 -~~~~~~~~~~g~~~~~~~~~p~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~  159 (520)
T 1s3e_A           84 -EVERLIHHVKGKSYPFRGPFPPV---WNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTE  159 (520)
T ss_dssp             -CSSEEEEEETTEEEEECSSSCCC---CSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSH
T ss_pred             -cCCceEEEECCEEEEecCCCCCC---CCHHHHHHHHHHHHHHHHHHhhcCcCCCccccchhhhhccCHHHHHHhhCCCH
Confidence             12345566788876665421100   0000011111211   111110      00     135689999999988888


Q ss_pred             HHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCc
Q psy7666         225 VADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGG  304 (350)
Q Consensus       225 ~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG  304 (350)
                      ..+.++.+++.+.++.+++++|+...+..+    ..++++.. +.    ..                 ..+...+++.||
T Consensus       160 ~~~~~~~~~~~~~~g~~~~~~s~~~~~~~~----~~~g~~~~-~~----~~-----------------~~~~~~~~~~gG  213 (520)
T 1s3e_A          160 SAKQLATLFVNLCVTAETHEVSALWFLWYV----KQCGGTTR-II----ST-----------------TNGGQERKFVGG  213 (520)
T ss_dssp             HHHHHHHHHHHHHHSSCTTTSBHHHHHHHH----HTTTCHHH-HH----CS-----------------TTSTTSEEETTC
T ss_pred             HHHHHHHHHHhhhcCCChHHhHHHHHHHHH----hhcCchhh-hc----cc-----------------CCCcceEEEeCC
Confidence            888999999999999999999987764332    22333211 11    00                 012235789999


Q ss_pred             HHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         305 LQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       305 ~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +++|+++|++.++  ++|++|++|++|.+++++|.|++.+|++++
T Consensus       214 ~~~l~~~l~~~lg--~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~  256 (520)
T 1s3e_A          214 SGQVSERIMDLLG--DRVKLERPVIYIDQTRENVLVETLNHEMYE  256 (520)
T ss_dssp             THHHHHHHHHHHG--GGEESSCCEEEEECSSSSEEEEETTSCEEE
T ss_pred             HHHHHHHHHHHcC--CcEEcCCeeEEEEECCCeEEEEECCCeEEE
Confidence            9999999999985  789999999999998888999999997664

>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}

Probab=99.86  E-value=1.7e-20  Score=182.92  Aligned_cols=216  Identities=15%  Similarity=0.186  Sum_probs=157.6

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      ++++||+||+   ++|++|+|||+++++||++.++. .+|+.+|.|++++.+... ...+.++++++|+..++...+   
T Consensus         8 aGiaGLsaA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~g~~~d~G~~~~~~~~~-~~~~~~l~~~lg~~~~~~~~~---   82 (421)
T 3nrn_A            8 AGLGGLLAGAFLARNGHEIIVLEKSAMIGGRFTNLP-YKGFQLSTGALHMIPHGE-DGPLAHLLRILGAKVEIVNSN---   82 (421)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSSSSCTTSSEEE-ETTEEEESSSCSEETTTT-SSHHHHHHHHHTCCCCEEECS---
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEeCCCCCCceeEEec-cCCEEEecCCeEEEccCC-ChHHHHHHHHhCCcceEEECC---
Confidence            3459999998   67999999999999999999999 599999999988755321 238999999999976655532   


Q ss_pred             CCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHH---HhhcCCCCCCCCcHHHHHHHh-hChHHHHHHHHHhh
Q psy7666         159 PTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILH---DLTTKTVPKSDESIYDFVSRR-FGSEVADYAVSSMI  234 (350)
Q Consensus       159 p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~---~~~~~~~~~~~~Sv~~~l~~~-~~~~~~~~~~~pl~  234 (350)
                      +   ...++.+|+.+.+|.....       +...+..++..   .........++.|+.+|+++. ++.+..+.++.|++
T Consensus        83 ~---~~~~~~~g~~~~~~~~~~~-------l~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~g~~~~~~~~~~~~~~  152 (421)
T 3nrn_A           83 P---KGKILWEGKIFHYRESWKF-------LSVKEKAKALKLLAEIRMNKLPKEEIPADEWIKEKIGENEFLLSVLESFA  152 (421)
T ss_dssp             S---SCEEEETTEEEEGGGGGGG-------CC--------CCHHHHHTTCCCCCCSBHHHHHHHHTCCCHHHHHHHHHHH
T ss_pred             C---CeEEEECCEEEEcCCchhh-------CCHhHHHHHHHHHHHHHhccCCCCCCCHHHHHHHhcCCcHHHHHHHHHHH
Confidence            2   2345568888777653211       11111122111   111112234568999999988 89999999999999


Q ss_pred             hhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHH
Q psy7666         235 CGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGE  314 (350)
Q Consensus       235 ~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~  314 (350)
                      .++++.+++++|+..+++.+...           ..                        ..+.+++.||++.|+++|++
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~~~~-----------~~------------------------~~g~~~~~gG~~~l~~~l~~  197 (421)
T 3nrn_A          153 GWADSVSLSDLTALELAKEIRAA-----------LR------------------------WGGPGLIRGGCKAVIDELER  197 (421)
T ss_dssp             HHHHSSCGGGSBHHHHHHHHHHH-----------HH------------------------HCSCEEETTCHHHHHHHHHH
T ss_pred             HHhcCCCcccCCHHHHHHHHHHH-----------hh------------------------cCCcceecCCHHHHHHHHHH
Confidence            99999999999987765544321           10                        01357799999999999999


Q ss_pred             hhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         315 HLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       315 ~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      .+. .|++|+++++|++|..++++| |+ .+|++++
T Consensus       198 ~~~~~G~~i~~~~~V~~i~~~~~~v-V~-~~g~~~~  231 (421)
T 3nrn_A          198 IIMENKGKILTRKEVVEINIEEKKV-YT-RDNEEYS  231 (421)
T ss_dssp             HHHTTTCEEESSCCEEEEETTTTEE-EE-TTCCEEE
T ss_pred             HHHHCCCEEEcCCeEEEEEEECCEE-EE-eCCcEEE
Confidence            998 899999999999999988888 64 4566554

>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}

Probab=99.85  E-value=2.1e-20  Score=186.02  Aligned_cols=220  Identities=18%  Similarity=0.207  Sum_probs=123.9

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCC----cccccC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLAD----QVIPIT  155 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~----~l~~~~  155 (350)
                      +++||+||.   ++|++|+||||++++|||++|++ .+|+.||.|+|++....    .+.++++.+|...    ++.+.+
T Consensus        10 G~~GL~aA~~La~~G~~V~VlEa~~~~GG~~~t~~-~~G~~~D~G~~~~~~~~----~~~~l~~~~g~~~~~~~~~~~~~   84 (501)
T 4dgk_A           10 GFGGLALAIRLQAAGIPVLLLEQRDKPGGRAYVYE-DQGFTFDAGPTVITDPS----AIEELFALAGKQLKEYVELLPVT   84 (501)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECCC-------CEEE-ETTEEEECSCCCBSCTH----HHHHHHHTTTCCGGGTCCEEEES
T ss_pred             cHHHHHHHHHHHHCCCcEEEEccCCCCCCcEEEEE-eCCEEEecCceeecCch----hHHHHHHHhcchhhhceeeEecC
Confidence            449999997   78999999999999999999999 59999999999986432    5778888888542    222211


Q ss_pred             CCCCCCcceEEEeCCeEEECCCChhhhcccC---CCCCHHHHHH---HHHHhhcC----CCCCCCCcHHHHHHH------
Q psy7666         156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTH---SPFSKPLIFS---ILHDLTTK----TVPKSDESIYDFVSR------  219 (350)
Q Consensus       156 ~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~---~~l~~~~~~~---~l~~~~~~----~~~~~~~Sv~~~l~~------  219 (350)
                         |  ...+.+.+|....++.+...+...+   .+-....+.+   .+...+..    ....+..++.+++..      
T Consensus        85 ---~--~~~~~~~~g~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  159 (501)
T 4dgk_A           85 ---P--FYRLCWESGKVFNYDNDQTRLEAQIQQFNPRDVEGYRQFLDYSRAVFKEGYLKLGTVPFLSFRDMLRAAPQLAK  159 (501)
T ss_dssp             ---S--SEEEEETTSCEEEECSCHHHHHHHHHHHCTHHHHHHHHHHHHHHHHTSSSCC--CCCCCCCHHHHHHSGGGTTT
T ss_pred             ---c--ceEEEcCCCCEEEeeccHHHHHHHHhhcCccccchhhhHHHHHHHhhhhhhhhccccccchhhhhhhhhhhhhh
Confidence               2  2345566787777776543221110   0100111122   22222211    112233455555432      


Q ss_pred             -------------hhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhH
Q psy7666         220 -------------RFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESE  286 (350)
Q Consensus       220 -------------~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~  286 (350)
                                   .+.++..+.++... ...++.++...++..                 .++.                
T Consensus       160 l~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~g~~p~~~~~~~-----------------~~~~----------------  205 (501)
T 4dgk_A          160 LQAWRSVYSKVASYIEDEHLRQAFSFH-SLLVGGNPFATSSIY-----------------TLIH----------------  205 (501)
T ss_dssp             SHHHHHHHHHHHTTCCCHHHHHHHHHH-HHHHHSCC--CCCTH-----------------HHHH----------------
T ss_pred             hhhcccHHHHHHHHhccHHHHhhhhhh-hcccCCCcchhhhhh-----------------hhhh----------------
Confidence                         22222111111100 001111111111000                 0000                


Q ss_pred             HHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEE-EEeCCCceecC
Q psy7666         287 LYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVK-AVDQPIHQMTK  350 (350)
Q Consensus       287 ~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~-V~~~~G~~~~~  350 (350)
                       +   .....+.++++||+++|+++|++.+. .|++|++|++|++|..++++++ |++.+|+++++
T Consensus       206 -~---~~~~~G~~~p~GG~~~l~~aL~~~~~~~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~a  267 (501)
T 4dgk_A          206 -A---LEREWGVWFPRGGTGALVQGMIKLFQDLGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLT  267 (501)
T ss_dssp             -H---HHSCCCEEEETTHHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTSCEEEC
T ss_pred             -h---hhccCCeEEeCCCCcchHHHHHHHHHHhCCceeeecceeEEEeeCCeEEEEEecCCcEEEc
Confidence             0   01233578899999999999999999 8999999999999999999865 89999998763

>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine dinucleotide, isomerase; HET: FAD UDP; 2.25A {Trypanosoma cruzi} PDB: 4dsh_A*

Probab=99.82  E-value=1.3e-19  Score=180.50  Aligned_cols=232  Identities=12%  Similarity=0.121  Sum_probs=158.3

Q ss_pred             ehhhHhHhhh---cCC-CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666          82 LVIRILCTVL---RIS-TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS  157 (350)
Q Consensus        82 ~viaGLaaA~---~~G-~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~  157 (350)
                      ++++||+||+   ++| .+|+|||+++++||+++|....+|+.+|.|++++...++   .+.+++++++  +++.+    
T Consensus        17 ~G~~Gl~~A~~l~~~g~~~v~v~E~~~~~GG~~~~~~~~~g~~~~~g~~~~~~~~~---~~~~l~~~~~--~~~~~----   87 (484)
T 4dsg_A           17 AGPTGLGAAVRLTELGYKNWHLYECNDTPGGLSRSFLDENGFTWDLGGHVIFSHYQ---YFDDVMDWAV--QGWNV----   87 (484)
T ss_dssp             CSHHHHHHHHHHHHTTCCSEEEEESSSSSSGGGCEEECTTSCEEESSCCCBCCSBH---HHHHHHHHHC--SCEEE----
T ss_pred             cCHHHHHHHHHHHHcCCCCEEEEeCCCCCCCeeeeeecCCCcEEeeCCcccccChH---HHHHHHHHHh--hhhhh----
Confidence            3459999997   567 899999999999999999632589999999999977665   8999999985  33333    


Q ss_pred             CCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhc---CCCCCCCCcHHHHHHHhhChHHHHHHHHHhh
Q psy7666         158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTT---KTVPKSDESIYDFVSRRFGSEVADYAVSSMI  234 (350)
Q Consensus       158 ~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~---~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~  234 (350)
                        .....+++.+|+.+++|...  .+.   .+......+.+..++.   .....+++|+.+|+++++|..+++.++.|++
T Consensus        88 --~~~~~~~~~~g~~~~~P~~~--~~~---~l~~~~~~~~~~~ll~~~~~~~~~~~~s~~e~~~~~~g~~~~~~~~~p~~  160 (484)
T 4dsg_A           88 --LQRESWVWVRGRWVPYPFQN--NIH---RLPEQDRKRCLDELVRSHARTYTEPPNNFEESFTRQFGEGIADIFMRPYN  160 (484)
T ss_dssp             --EECCCEEEETTEEEESSGGG--CGG---GSCHHHHHHHHHHHHHHHHCCCSSCCSSHHHHHHHHHHHHHCCCCCHHHH
T ss_pred             --ccCceEEEECCEEEEeCccc--hhh---hCCHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHhHHHHHHHHHHHHH
Confidence              22457888999999998321  111   2233223333332221   1233578999999999999999999999999


Q ss_pred             hhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEE-ecCcHHHHHHHHH
Q psy7666         235 CGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWS-VEGGLQTIVNTLG  313 (350)
Q Consensus       235 ~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~-~~GG~~~L~~aLa  313 (350)
                      .++|+.+++++|+.++++.+....  ...++.+++...  ....         +    .....+.+ +.||+++|+++|+
T Consensus       161 ~~v~~~~~~~ls~~~~~~r~~~~~--l~~~~~~~~~~~--~~~~---------~----~~~~~f~yp~~gG~~~l~~~la  223 (484)
T 4dsg_A          161 FKVWAVPPCLMSTEWVEERVAPVD--LERIRRNIQENR--DDLG---------W----GPNATFRFPQRGGTGIIYQAIK  223 (484)
T ss_dssp             HHHHSSCGGGBCSSSCTTTSCCCC--HHHHHHHHHHTC--CCCC---------C----STTSEEEEESSSCTHHHHHHHH
T ss_pred             hhhcCCCHHHhcHHHHhccccCCC--HHHHHHHHhhcc--cccC---------C----CccceEEeecCCCHHHHHHHHH
Confidence            999999999999987654332100  001122332110  0000         0    00112344 4699999999999


Q ss_pred             HhhcCCCEEEeC--cceeEEEEeCCeEEEEeCCCceec
Q psy7666         314 EHLSNKVEVKMD--TTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       314 ~~L~~g~~I~l~--~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +.++ ..+|+++  ++|++|..++++|.  ..+|++++
T Consensus       224 ~~l~-~~~i~~~~~~~V~~I~~~~~~v~--~~~G~~~~  258 (484)
T 4dsg_A          224 EKLP-SEKLTFNSGFQAIAIDADAKTIT--FSNGEVVS  258 (484)
T ss_dssp             HHSC-GGGEEECGGGCEEEEETTTTEEE--ETTSCEEE
T ss_pred             hhhh-hCeEEECCCceeEEEEecCCEEE--ECCCCEEE
Confidence            9996 1289999  56999998877764  46776553

>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD BCN; 2.25A {Mycobacterium tuberculosis}

Probab=99.81  E-value=1.1e-20  Score=183.69  Aligned_cols=206  Identities=12%  Similarity=0.113  Sum_probs=143.6

Q ss_pred             ehhhHhHhhh---cC-CCCEEEEecCCCCCcceEEEecC-CCeEE-ecCCceecCCCCCchHHHHHHHHcCCCCcccccC
Q psy7666          82 LVIRILCTVL---RI-STPITLLESSSRLGGWVRSVQSP-EGLIF-EKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT  155 (350)
Q Consensus        82 ~viaGLaaA~---~~-G~~VtVlEa~drvGGRi~T~~~~-~G~~~-D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~  155 (350)
                      ++++||+||+   ++ |++|+|+|+++++||+++|.... +|+.+ |.|+++++..++   .++++++++|+..   .  
T Consensus        15 aG~~Gl~aA~~L~~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~---~~~~~~~~~g~~~---~--   86 (399)
T 1v0j_A           15 SGFFGLTIAERVATQLDKRVLVLERRPHIGGNAYSEAEPQTGIEVHKYGAHLFHTSNK---RVWDYVRQFTDFT---D--   86 (399)
T ss_dssp             CSHHHHHHHHHHHHHSCCCEEEECSSSSSSGGGCEEECTTTCCEEETTSCCCEEESCH---HHHHHHTTTCCBC---C--
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeeeccccCCCEEEEeCCCcEEcCCcH---HHHHHHHHhhhhh---c--
Confidence            3459999997   45 99999999999999999999832 78888 599999987766   9999999998721   1  


Q ss_pred             CCCCCCcceEEEeCCeEEECCCChh---hhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHHHHHH
Q psy7666         156 SSHPTAQNRLIYVNKKLHKLPSNFF---SLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSS  232 (350)
Q Consensus       156 ~~~p~~~~~~i~~~g~~~~~p~~~~---~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~p  232 (350)
                          .....+++.+|+.+++|..+.   .++..  .+........+.+........++.|+.+|+.+.+++.+.+.++.|
T Consensus        87 ----~~~~~~~~~~G~~~~~p~~~~~~~~l~~~--~~~~~~~~~~l~~~~~~~~~~~~~s~~e~l~~~~g~~~~~~~~~~  160 (399)
T 1v0j_A           87 ----YRHRVFAMHNGQAYQFPMGLGLVSQFFGK--YFTPEQARQLIAEQAAEIDTADAQNLEEKAISLIGRPLYEAFVKG  160 (399)
T ss_dssp             ----CCCCEEEEETTEEEEESSSHHHHHHHHTS--CCCHHHHHHHHHHHGGGSCTTC----CCHHHHHHCHHHHHHHTHH
T ss_pred             ----cccceEEEECCEEEeCCCCHHHHHHHhcc--cCCHHHHHHHHHHHhhccCCCCcccHHHHHHHHHhHHHHHHHHHH
Confidence                123467788999999987642   22221  122222233444443322235678999999999999999999999


Q ss_pred             hhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceE-EEecCcHHHHHHH
Q psy7666         233 MICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSV-WSVEGGLQTIVNT  311 (350)
Q Consensus       233 l~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~GG~~~L~~a  311 (350)
                      ++.++|+.+++++|+.++.. +.        ..   . .  ....               .....+ .+++||+++|+++
T Consensus       161 ~~~~~~~~~~~~ls~~~~~~-~~--------~~---~-~--~~~~---------------~~~~~~~~~p~gG~~~l~~~  210 (399)
T 1v0j_A          161 YTAKQWQTDPKELPAANITR-LP--------VR---Y-T--FDNR---------------YFSDTYEGLPTDGYTAWLQN  210 (399)
T ss_dssp             HHHHHHTSCGGGSCGGGCSC-CC--------CC---S-S--SCCC---------------SCCCSEEECBTTHHHHHHHH
T ss_pred             HHHhhcCCChhhcChHhhhc-ce--------eE---e-c--cccc---------------hhhhhhcccccccHHHHHHH
Confidence            99999999999999765310 00        00   0 0  0000               001123 3799999999999


Q ss_pred             HHHhhcCCCEEEeCcceeEEEE
Q psy7666         312 LGEHLSNKVEVKMDTTCTNLEF  333 (350)
Q Consensus       312 La~~L~~g~~I~l~~~V~~I~~  333 (350)
                      |++.+  |++|++|++|++|..
T Consensus       211 l~~~~--g~~I~l~~~V~~I~~  230 (399)
T 1v0j_A          211 MAADH--RIEVRLNTDWFDVRG  230 (399)
T ss_dssp             HTCST--TEEEECSCCHHHHHH
T ss_pred             HHhcC--CeEEEECCchhhhhh
Confidence            99976  489999999999864

>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A {Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A* 2yg7_A* 3rha_A*

Probab=99.81  E-value=3.9e-19  Score=174.57  Aligned_cols=220  Identities=15%  Similarity=0.166  Sum_probs=151.4

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHP  159 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p  159 (350)
                      +++||+||+   ++|++|+|||+++++|||+.|... +|+.+|.|++++.+.++   .+.++++++|+......     +
T Consensus        14 G~~Gl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~-~g~~~~~g~~~~~~~~~---~~~~~~~~~g~~~~~~~-----~   84 (453)
T 2yg5_A           14 GPSGLAAATALRKAGLSVAVIEARDRVGGRTWTDTI-DGAVLEIGGQWVSPDQT---ALISLLDELGLKTFERY-----R   84 (453)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECSSSSSCTTCCEEEE-TTEEEECSCCCBCTTCH---HHHHHHHHTTCCEEECC-----C
T ss_pred             CHHHHHHHHHHHHCCCcEEEEECCCCCCCceecccc-CCceeccCCeEecCccH---HHHHHHHHcCCcccccc-----c
Confidence            349999997   579999999999999999999995 89999999999977654   89999999999643221     1


Q ss_pred             CCcceEEEeC-CeEEECCCChhhhcccCCCCCH---HHHHH---HHHHh---hc---CC--C---CCCCCcHHHHHHHhh
Q psy7666         160 TAQNRLIYVN-KKLHKLPSNFFSLFKTHSPFSK---PLIFS---ILHDL---TT---KT--V---PKSDESIYDFVSRRF  221 (350)
Q Consensus       160 ~~~~~~i~~~-g~~~~~p~~~~~~~~~~~~l~~---~~~~~---~l~~~---~~---~~--~---~~~~~Sv~~~l~~~~  221 (350)
                      . ....++.+ |+.+.++....       ++..   .++.+   .+..+   ..   ++  .   ..++.|+.+|+++.+
T Consensus        85 ~-~~~~~~~~~g~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~  156 (453)
T 2yg5_A           85 E-GESVYISSAGERTRYTGDSF-------PTNETTKKEMDRLIDEMDDLAAQIGAEEPWAHPLARDLDTVSFKQWLINQS  156 (453)
T ss_dssp             C-SEEEEECTTSCEEEECSSSC-------SCCHHHHHHHHHHHHHHHHHHHHHCSSCGGGSTTHHHHHSSBHHHHHHHHC
T ss_pred             C-CCEEEEeCCCceeeccCCCC-------CCChhhHHHHHHHHHHHHHHHhhcCCCCCCCCcchhhhhhccHHHHHHhhc
Confidence            1 22233333 55544432110       0110   01111   11111   11   00  0   124789999999988


Q ss_pred             ChHHHHHHHHHhhhhcccCCcc-cccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEE
Q psy7666         222 GSEVADYAVSSMICGICAGDAK-KISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWS  300 (350)
Q Consensus       222 ~~~~~~~~~~pl~~~~~~~~~~-~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~  300 (350)
                      .+...+.++.+++.+.|+.+++ ++|+...+..+.    ..+++. .+.    .                  ..+...++
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~----~~g~~~-~~~----~------------------~~~~~~~~  209 (453)
T 2yg5_A          157 DDAEARDNIGLFIAGGMLTKPAHSFSALQAVLMAA----SAGSFS-HLV----D------------------EDFILDKR  209 (453)
T ss_dssp             SCHHHHHHHHHHHCCCCCCSCTTSSBHHHHHHHHH----HTTCHH-HHH----C------------------HHHHTCEE
T ss_pred             CCHHHHHHHHHHHHhhcccCCcccccHHHHHHHhc----cCCcHh-hhc----c------------------CCCcceEE
Confidence            8888888999999999999998 999877654332    223221 110    0                  00113578


Q ss_pred             ecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666         301 VEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT  349 (350)
Q Consensus       301 ~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~  349 (350)
                      +.||+++|+++|++.++  ++|++|++|++|.+++++ |.|++ +|++++
T Consensus       210 ~~gG~~~l~~~l~~~lg--~~i~~~~~V~~i~~~~~~~v~v~~-~~~~~~  256 (453)
T 2yg5_A          210 VIGGMQQVSIRMAEALG--DDVFLNAPVRTVKWNESGATVLAD-GDIRVE  256 (453)
T ss_dssp             ETTCTHHHHHHHHHHHG--GGEECSCCEEEEEEETTEEEEEET-TTEEEE
T ss_pred             EcCChHHHHHHHHHhcC--CcEEcCCceEEEEEeCCceEEEEE-CCeEEE
Confidence            99999999999999985  799999999999999888 99887 565543

>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase, lipopolysaccharide biosynthesi; HET: FAD; 2.0A {Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB: 2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*

Probab=99.80  E-value=5.8e-20  Score=177.78  Aligned_cols=213  Identities=12%  Similarity=0.131  Sum_probs=151.5

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecC-CCeEE-ecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSP-EGLIF-EKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS  157 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~-~G~~~-D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~  157 (350)
                      +++||++|+   ++|++|+|+|+++++||+++|.... +|+.+ |.|+|++++.++   .++++++++|..   .+    
T Consensus        12 G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~~g~~~~~~G~~~~~~~~~---~~~~~~~~l~~~---~~----   81 (384)
T 2bi7_A           12 GFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNE---TVWNYVNKHAEM---MP----   81 (384)
T ss_dssp             SHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCH---HHHHHHHTTSCE---EE----
T ss_pred             CHHHHHHHHHHHHCCCcEEEEEecCCcCCccccccccCCCceEeeCCceEECCCCH---HHHHHHHHHhhh---cc----
Confidence            349999997   5699999999999999999998832 68876 999999987766   999999999852   22    


Q ss_pred             CCCCcceEEEeCCeEEECCCChhhhcccCC-CCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHHHHHHhhhh
Q psy7666         158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHS-PFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICG  236 (350)
Q Consensus       158 ~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~-~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~  236 (350)
                        .....+++.+|+.+.+|.++..+..... .+...+..+++.+..... ..++.|+.+|+.+.+++.+.+.++.|++.+
T Consensus        82 --~~~~~~~~~~g~~~~~P~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~-~~~~~sl~e~~~~~~g~~~~~~~~~p~~~~  158 (384)
T 2bi7_A           82 --YVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEKGDST-IADPQTFEEEALRFIGKELYEAFFKGYTIK  158 (384)
T ss_dssp             --CCCCEEEEETTEEEEESCCHHHHHHHTTCCCCHHHHHHHHHHHSCCS-CSSCCBHHHHHHHHHCHHHHHHHTHHHHHH
T ss_pred             --cccceEEEECCEEEECCCChhHHHHHhcccCCHHHHHHHHHHhhhcc-CCCCcCHHHHHHHhhcHHHHHHHHHHHHHH
Confidence              1123567789998899887533322111 123333445555544322 356889999999999999999999999999


Q ss_pred             cccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceE-EEecCcHHHHHHHHHHh
Q psy7666         237 ICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSV-WSVEGGLQTIVNTLGEH  315 (350)
Q Consensus       237 ~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~GG~~~L~~aLa~~  315 (350)
                      +|+.+++++|+.++. .+.        ....      .++.          |    . ...+ .+++||+++|+++|++.
T Consensus       159 ~~~~~~~~ls~~~~~-r~~--------~~~~------~~~~----------~----~-~~~~~~~p~gG~~~l~~~l~~~  208 (384)
T 2bi7_A          159 QWGMQPSELPASILK-RLP--------VRFN------YDDN----------Y----F-NHKFQGMPKCGYTQMIKSILNH  208 (384)
T ss_dssp             HHSSCGGGSBGGGCC-SCC--------CCSS------SCCC----------S----C-CCSEEEEETTHHHHHHHHHHCS
T ss_pred             HhCCCHHHhCHHHHh-ccc--------cccc------cccc----------c----c-cccccEEECcCHHHHHHHHHhc
Confidence            999999999976531 000        0000      0000          0    0 1123 38999999999999986


Q ss_pred             hcCCCEEEeCccee-EEEEeCCeEEE
Q psy7666         316 LSNKVEVKMDTTCT-NLEFLEKGVKA  340 (350)
Q Consensus       316 L~~g~~I~l~~~V~-~I~~~~~gv~V  340 (350)
                      +  |++|++|++|+ +|....+.|.+
T Consensus       209 ~--g~~I~l~~~V~~~i~~~~d~VI~  232 (384)
T 2bi7_A          209 E--NIKVDLQREFIVEERTHYDHVFY  232 (384)
T ss_dssp             T--TEEEEESCCCCGGGGGGSSEEEE
T ss_pred             C--CCEEEECCeeehhhhccCCEEEE
Confidence            5  58999999999 88654444433

>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase, isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP: c.4.1.3 d.16.1.7

Probab=99.79  E-value=1.5e-19  Score=173.73  Aligned_cols=204  Identities=14%  Similarity=0.137  Sum_probs=145.9

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEe-cCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFE-KGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS  157 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D-~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~  157 (350)
                      ++++||+||+   ++|++|+|+|+++++||++.|.. .+|+.+| .|+|+++..++   .++++++++|...   .    
T Consensus         9 ~G~~Gl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~g~~~~~~G~~~~~~~~~---~~~~~~~~l~~~~---~----   77 (367)
T 1i8t_A            9 SGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHKYGAHIFHTNDK---YIWDYVNDLVEFN---R----   77 (367)
T ss_dssp             CSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEE-ETTEEEETTSCCCEEESCH---HHHHHHHTTSCBC---C----
T ss_pred             cCHHHHHHHHHHHhCCCcEEEEecCCCCCcceEeec-cCCceeeccCCceecCCCH---HHHHHHHHhhhhh---h----
Confidence            4459999997   56999999999999999999998 4899995 99999987765   8999999988522   1    


Q ss_pred             CCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhc
Q psy7666         158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGI  237 (350)
Q Consensus       158 ~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~  237 (350)
                        .....+++.+|+.+.+|.++..+..........+..+++.+........++.|+++|+.+++++.+.+.++.|++.++
T Consensus        78 --~~~~~~~~~~g~~~~~p~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~s~~~~~~~~~g~~~~~~~~~p~~~~~  155 (367)
T 1i8t_A           78 --FTNSPLAIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKYGDKVPENLEEQAISLVGEDLYQALIKGYTEKQ  155 (367)
T ss_dssp             --CCCCCEEEETTEEEESSBSHHHHHHHHCCCCHHHHHHHHHHHTTTTCCCCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             --ccccceEEECCeEEEcCCCHHHHHHHhccCCHHHHHHHHHHHhhccCCCCCccHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence              112345678999999987643332111111223344555554433333568899999999999999999999999999


Q ss_pred             ccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceE-EEecCcHHHHHHHHHHhh
Q psy7666         238 CAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSV-WSVEGGLQTIVNTLGEHL  316 (350)
Q Consensus       238 ~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~GG~~~L~~aLa~~L  316 (350)
                      |+.+++++|+.++. .+        .. ...     .+..               .....+ .+++||+++|+++|++  
T Consensus       156 ~~~~~~~lsa~~~~-~l--------~~-~~~-----~~~~---------------~~~~~~~~~p~gG~~~l~~~l~~--  203 (367)
T 1i8t_A          156 WGRSAKELPAFIIK-RI--------PV-RFT-----FDNN---------------YFSDRYQGIPVGGYTKLIEKMLE--  203 (367)
T ss_dssp             HSSCGGGSCTTSSC-CC--------CB-CSS-----SCCC---------------SCCCSEEECBTTCHHHHHHHHHT--
T ss_pred             hCCChHHcCHHHHh-hc--------ee-eec-----cccc---------------cccchhhcccCCCHHHHHHHHhc--
Confidence            99999999975431 00        00 000     0000               001123 3799999999999998  


Q ss_pred             cCCCEEEeCcceeEEE
Q psy7666         317 SNKVEVKMDTTCTNLE  332 (350)
Q Consensus       317 ~~g~~I~l~~~V~~I~  332 (350)
                        |++|++|++|++|.
T Consensus       204 --g~~i~l~~~V~~i~  217 (367)
T 1i8t_A          204 --GVDVKLGIDFLKDK  217 (367)
T ss_dssp             --TSEEECSCCGGGSH
T ss_pred             --CCEEEeCCceeeec
Confidence              37999999999885

>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase; HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB: 3hdy_A* 3he3_A* 3mj4_A*

Probab=99.78  E-value=4e-19  Score=172.24  Aligned_cols=202  Identities=10%  Similarity=0.157  Sum_probs=147.4

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEE-ecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIF-EKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~-D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      +++||+||+   ++|++|+|+|+++++||++.+....+|+.+ |.|+|++++.++   .++++++++|..   .+     
T Consensus        38 G~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~~~~~~~G~~~~~~G~~~~~~~~~---~~~~~~~~~~~~---~~-----  106 (397)
T 3hdq_A           38 GFAGSVLAERLASSGQRVLIVDRRPHIGGNAYDCYDDAGVLIHPYGPHIFHTNSK---DVFEYLSRFTEW---RP-----  106 (397)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECSSSSSSGGGCCEECTTSCEECTTSCCCCEESCH---HHHHHHHTSCCE---EE-----
T ss_pred             cHHHHHHHHHHHHCCCceEEEeccCCCCCccceeeccCCceEeecCCcccCCChH---HHHHHHHHhhhc---cc-----
Confidence            349999997   579999999999999999999873478875 999999987765   999999999852   11     


Q ss_pred             CCCcceEEEeCCeEEECCCChhh---hcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHHHHHHhhh
Q psy7666         159 PTAQNRLIYVNKKLHKLPSNFFS---LFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMIC  235 (350)
Q Consensus       159 p~~~~~~i~~~g~~~~~p~~~~~---~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~  235 (350)
                       .....+++.+|+++++|.++..   +...  .+.......++.+  .+....+++|+.+|+++++|..+++.++.|++.
T Consensus       107 -~~~~~~~~~~g~l~~lP~~~~~~~~l~~~--~~~~~~~~~~l~~--~~~~~~~~~s~~e~~~~~~G~~~~e~~~~py~~  181 (397)
T 3hdq_A          107 -YQHRVLASVDGQLLPIPINLDTVNRLYGL--NLTSFQVEEFFAS--VAEKVEQVRTSEDVVVSKVGRDLYNKFFRGYTR  181 (397)
T ss_dssp             -CCCBEEEEETTEEEEESCCHHHHHHHHTC--CCCHHHHHHHHHH--HCCCCSSCCBHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred             -ccccceEEECCEEEEcCCChHHHHHhhcc--CCCHHHHHHHHhh--cccCCCCCcCHHHHHHHhcCHHHHHHHHHHHhC
Confidence             2235678899999999987533   2221  2344334444432  223346789999999999999999999999999


Q ss_pred             hcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceE-EEecCcHHHHHHHHHH
Q psy7666         236 GICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSV-WSVEGGLQTIVNTLGE  314 (350)
Q Consensus       236 ~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~-~~~~GG~~~L~~aLa~  314 (350)
                      ++|+.+++++|+.++ ..+        .. ...     .++         . |    . ...+ ..++||+.+|+++|++
T Consensus       182 k~~~~~~~~Lsa~~~-~Rv--------p~-~~~-----~d~---------~-y----f-~~~~qg~P~gGy~~l~e~l~~  231 (397)
T 3hdq_A          182 KQWGLDPSELDASVT-ARV--------PT-RTN-----RDN---------R-Y----F-ADTYQAMPLHGYTRMFQNMLS  231 (397)
T ss_dssp             HHHSSCGGGSBTTTG-GGS--------CC-CSS-----CCC---------B-S----C-CCSEEEEETTCHHHHHHHHTC
T ss_pred             chhCCCHHHHHHHHH-Hhc--------Cc-ccc-----cCc---------c-c----h-hhhheeccCCCHHHHHHHHHh
Confidence            999999999998643 111        00 000     000         0 0    0 1123 4699999999999987


Q ss_pred             hhcCCCEEEeCcceeEEE
Q psy7666         315 HLSNKVEVKMDTTCTNLE  332 (350)
Q Consensus       315 ~L~~g~~I~l~~~V~~I~  332 (350)
                      ..  |++|+||++|+++.
T Consensus       232 ~~--g~~V~l~~~v~~~~  247 (397)
T 3hdq_A          232 SP--NIKVMLNTDYREIA  247 (397)
T ss_dssp             ST--TEEEEESCCGGGTT
T ss_pred             cc--CCEEEECCeEEecc
Confidence            65  68999999998663

>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD; HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB: 2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*

Probab=99.78  E-value=1.3e-18  Score=169.47  Aligned_cols=215  Identities=12%  Similarity=0.095  Sum_probs=143.6

Q ss_pred             hhhHhHhhh---cCC-CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          83 VIRILCTVL---RIS-TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        83 viaGLaaA~---~~G-~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      +++||+||+   ++| ++|+|||+++++|||++|.+ .+|+.+|.|++++.+.++   .+.++++++|++....      
T Consensus        15 G~aGl~aA~~L~~~g~~~v~v~E~~~~~GG~~~t~~-~~G~~~d~G~~~~~~~~~---~~~~l~~~~g~~~~~~------   84 (424)
T 2b9w_A           15 GPAGLAAGMYLEQAGFHDYTILERTDHVGGKCHSPN-YHGRRYEMGAIMGVPSYD---TIQEIMDRTGDKVDGP------   84 (424)
T ss_dssp             SHHHHHHHHHHHHTTCCCEEEECSSSCSSTTCCCCE-ETTEECCSSCCCBCTTCH---HHHHHHHHHCCCCCSC------
T ss_pred             CHHHHHHHHHHHhCCCCcEEEEECCCCCCCcccccC-CCCcccccCceeecCCcH---HHHHHHHHhCCccccc------
Confidence            349999997   679 99999999999999999999 489999999999977665   8999999999854221      


Q ss_pred             CCCcceEEEeCCeEEECCCC-hhhhcccCCCCC-HHHHHHHHHHhhcC---------CCCCCCCcHHHHHHHhhChHHHH
Q psy7666         159 PTAQNRLIYVNKKLHKLPSN-FFSLFKTHSPFS-KPLIFSILHDLTTK---------TVPKSDESIYDFVSRRFGSEVAD  227 (350)
Q Consensus       159 p~~~~~~i~~~g~~~~~p~~-~~~~~~~~~~l~-~~~~~~~l~~~~~~---------~~~~~~~Sv~~~l~~~~~~~~~~  227 (350)
                       .....+++.+|+.+ .|.. ......   ... ...+...+...+..         ....+..|+.+|++++....+.+
T Consensus        85 -~~~~~~~~~~g~~~-~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~  159 (424)
T 2b9w_A           85 -KLRREFLHEDGEIY-VPEKDPVRGPQ---VMAAVQKLGQLLATKYQGYDANGHYNKVHEDLMLPFDEFLALNGCEAARD  159 (424)
T ss_dssp             -CCCEEEECTTSCEE-CGGGCTTHHHH---HHHHHHHHHHHHHTTTTTTTSSSSSSCCCGGGGSBHHHHHHHTTCGGGHH
T ss_pred             -cccceeEcCCCCEe-ccccCcccchh---HHHHHHHHHHHHhhhhhhcccccchhhhhhhhccCHHHHHHhhCcHHHHH
Confidence             11234555566543 2221 000000   000 00011111111100         01234689999999876666777


Q ss_pred             HHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHH
Q psy7666         228 YAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQT  307 (350)
Q Consensus       228 ~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~  307 (350)
                      .++.|++.+.|+ +++++|+...+..+        .. .++...  .                    ....+++.||+++
T Consensus       160 ~~~~~~~~~~~~-~~~~~~a~~~~~~~--------~~-~~~~~~--~--------------------~~~~~~~~~g~~~  207 (424)
T 2b9w_A          160 LWINPFTAFGYG-HFDNVPAAYVLKYL--------DF-VTMMSF--A--------------------KGDLWTWADGTQA  207 (424)
T ss_dssp             HHTTTTCCCCCC-CTTTSBHHHHHHHS--------CH-HHHHHH--H--------------------HTCCBCCTTCHHH
T ss_pred             HHHHHHHhhccC-ChHhcCHHHHHHhh--------hH-hhhhcc--c--------------------CCceEEeCChHHH
Confidence            777888887776 56778876643221        11 111110  0                    1124568999999


Q ss_pred             HHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666         308 IVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIH  346 (350)
Q Consensus       308 L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~  346 (350)
                      ++++|++.+.  .+|++|++|++|..++++|.|++.+|+
T Consensus       208 l~~~l~~~l~--~~v~~~~~V~~i~~~~~~v~v~~~~g~  244 (424)
T 2b9w_A          208 MFEHLNATLE--HPAERNVDITRITREDGKVHIHTTDWD  244 (424)
T ss_dssp             HHHHHHHHSS--SCCBCSCCEEEEECCTTCEEEEESSCE
T ss_pred             HHHHHHHhhc--ceEEcCCEEEEEEEECCEEEEEECCCe
Confidence            9999999995  689999999999998888999988875

>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A

Probab=99.72  E-value=2.2e-16  Score=154.93  Aligned_cols=228  Identities=10%  Similarity=0.008  Sum_probs=145.6

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEe-cC-------------------CCeEEecCCceecCCCCCchHHH
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQ-SP-------------------EGLIFEKGPRTIRPKGRLGANTL  139 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~-~~-------------------~G~~~D~Ga~~~~~~~~~~~~l~  139 (350)
                      +++||+||.   ++|++|+|+|+++++||+++|++ ..                   .++.+|+||+++....    .+.
T Consensus        15 G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~s~~~~~~g~~~~~~~~~~~~~~~~g~~~~~d~gP~~l~~~~----~l~   90 (433)
T 1d5t_A           15 GLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLEGPPETMGRGRDWNVDLIPKFLMANG----QLV   90 (433)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECSSSSSCTTSCEECSHHHHHHHTTCTTCCCGGGCCGGGCCEESSCCBEETTS----HHH
T ss_pred             CHHHHHHHHHHHHCCCcEEEEecCCCccccccccccHHHHHhhccCCCCChhHhcccCceEEccCcceeeccc----hHH
Confidence            348999987   67999999999999999999988 10                   4578999999997654    799


Q ss_pred             HHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCH---HHHHHHHHHhhc--C-------CCC
Q psy7666         140 KLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSK---PLIFSILHDLTT--K-------TVP  207 (350)
Q Consensus       140 ~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~---~~~~~~l~~~~~--~-------~~~  207 (350)
                      ++++++|+...+...    +. ...+++.+|+.+.+|.+..+.+.. .....   ..+.+++.....  .       ...
T Consensus        91 ~ll~~lgl~~~l~~~----~~-~~~~~~~~g~~~~~p~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~  164 (433)
T 1d5t_A           91 KMLLYTEVTRYLDFK----VV-EGSFVYKGGKIYKVPSTETEALAS-NLMGMFEKRRFRKFLVFVANFDENDPKTFEGVD  164 (433)
T ss_dssp             HHHHHHTGGGGCCEE----EC-CEEEEEETTEEEECCCSHHHHHHC-SSSCHHHHHHHHHHHHHHHHCCTTCGGGGTTCC
T ss_pred             HHHHHcCCccceEEE----Ee-CceEEeeCCEEEECCCCHHHHhhC-cccChhhHHHHHHHHHHHHhhcccCchhccccc
Confidence            999999986543221    11 236677899988898874333221 12221   123333332211  0       012


Q ss_pred             CCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHH
Q psy7666         208 KSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESEL  287 (350)
Q Consensus       208 ~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~  287 (350)
                      .+..|+.+|+++.+-......++...+....+.++.+.++...+..+..+           .... .             
T Consensus       165 ~~~~s~~~~l~~~~~~~~l~~~l~~~~~~~~~~~~~~~p~~~~~~~~~~~-----------~~s~-~-------------  219 (433)
T 1d5t_A          165 PQNTSMRDVYRKFDLGQDVIDFTGHALALYRTDDYLDQPCLETINRIKLY-----------SESL-A-------------  219 (433)
T ss_dssp             TTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBSHHHHHHHHHH-----------HHSC-C-------------
T ss_pred             cccCCHHHHHHHcCCCHHHHHHHHHHHHhccCCCccCCCHHHHHHHHHHH-----------HHHH-H-------------
Confidence            46789999998764444444444433222333445455544332222110           0000 0             


Q ss_pred             HHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         288 YRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       288 y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                          ......++++.||++.|+++|++.+. .|++|+++++|++|..+++++.+...+|++++
T Consensus       220 ----~~g~~~~~~p~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~v~~v~~~g~~~~  278 (433)
T 1d5t_A          220 ----RYGKSPYLYPLYGLGELPQGFARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVAR  278 (433)
T ss_dssp             ----SSSCCSEEEETTCTTHHHHHHHHHHHHHTCCCBCSCCCCEEEEETTEEEEEEETTEEEE
T ss_pred             ----hcCCCcEEEeCcCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEeCCEEEEEEECCeEEE
Confidence                00012367899999999999999987 78999999999999998888764335676654

>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A {Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A* 3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A* 3cnt_B* 1yy5_A* 1xpq_A*

Probab=99.72  E-value=5.4e-17  Score=162.46  Aligned_cols=210  Identities=12%  Similarity=0.042  Sum_probs=120.7

Q ss_pred             hhHhHhhh---cCC-CCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCC
Q psy7666          84 IRILCTVL---RIS-TPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHP  159 (350)
Q Consensus        84 iaGLaaA~---~~G-~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p  159 (350)
                      +|||+||+   ++| ++|+||||++|+|||++|.+..+|+.+|+|++|+++...  +++++++.++|+....        
T Consensus        18 ~aGL~AA~~L~~~G~~~V~VlEa~~riGGr~~t~~~~~G~~~D~G~~~~~~~~~--~~~~~~~~~lg~~~~~--------   87 (516)
T 1rsg_A           18 IAGLKAASTLHQNGIQDCLVLEARDRVGGRLQTVTGYQGRKYDIGASWHHDTLT--NPLFLEEAQLSLNDGR--------   87 (516)
T ss_dssp             HHHHHHHHHHHHTTCCSEEEECSSSSSBTTCCEEECGGGCEEESSCCEECCTTT--CHHHHHHHHHHHHHCC--------
T ss_pred             HHHHHHHHHHHhcCCCCEEEEeCCCCCCCceeeeecCCCcEEecCCeEEecCCC--ChHHHHHHHhCCCCcc--------
Confidence            49999997   679 999999999999999999983279999999999986531  3788999898873210        


Q ss_pred             CCcceEEEeCCeEEECCCChhhhcccCCCCCHH----HHHHHHHHhhcCCCCCCCCcHHHHHHHhhChH------HHHHH
Q psy7666         160 TAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKP----LIFSILHDLTTKTVPKSDESIYDFVSRRFGSE------VADYA  229 (350)
Q Consensus       160 ~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~----~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~------~~~~~  229 (350)
                         ..+++.+|+.+.++......... ......    .+.++....+......++.|+.+|+.+.+...      ....+
T Consensus        88 ---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~~~l~~~l~~~~~~l~~~~~~~  163 (516)
T 1rsg_A           88 ---TRFVFDDDNFIYIDEERGRVDHD-KELLLEIVDNEMSKFAELEFHQHLGVSDCSFFQLVMKYLLQRRQFLTNDQIRY  163 (516)
T ss_dssp             ---CCEECCCCCCEEEETTTEECTTC-TTTCHHHHHHHHHHHHHHHC-------CCBHHHHHHHHHHHHGGGSCHHHHHH
T ss_pred             ---eeEEECCCCEEEEcCCCcccccc-HHHHHHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHhhcccCHHHHHH
Confidence               01222222222221110000000 000111    11122222222222356789999987654321      11112


Q ss_pred             HHHhhh---hcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHH
Q psy7666         230 VSSMIC---GICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQ  306 (350)
Q Consensus       230 ~~pl~~---~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~  306 (350)
                      +.+++.   ..++.+++.+|+...+                      .                 ...+ ...++.| ++
T Consensus       164 ~~~~~~~~~~~~g~~~~~~s~~~~~----------------------~-----------------~~~~-~~~~~~g-~~  202 (516)
T 1rsg_A          164 LPQLCRYLELWHGLDWKLLSAKDTY----------------------F-----------------GHQG-RNAFALN-YD  202 (516)
T ss_dssp             HHHHHGGGHHHHTBCTTTSBHHHHC----------------------C-----------------CCSS-CCEEESC-HH
T ss_pred             HHHHHHHHHHHhCCChHHCChHHHH----------------------h-----------------hccC-cchhhhC-HH
Confidence            222221   1223334444432210                      0                 0001 1245677 99


Q ss_pred             HHHHHHHHhhcCCCEEEeCcceeEEEEe-CCeEEEEeCCCceec
Q psy7666         307 TIVNTLGEHLSNKVEVKMDTTCTNLEFL-EKGVKAVDQPIHQMT  349 (350)
Q Consensus       307 ~L~~aLa~~L~~g~~I~l~~~V~~I~~~-~~gv~V~~~~G~~~~  349 (350)
                      +|+++|++.|+ +++|++|++|++|.++ +++|.|++.+|++++
T Consensus       203 ~l~~~l~~~l~-~~~i~~~~~V~~I~~~~~~~v~v~~~~g~~~~  245 (516)
T 1rsg_A          203 SVVQRIAQSFP-QNWLKLSCEVKSITREPSKNVTVNCEDGTVYN  245 (516)
T ss_dssp             HHHHHHHTTSC-GGGEETTCCEEEEEECTTSCEEEEETTSCEEE
T ss_pred             HHHHHHHHhCC-CCEEEECCEEEEEEEcCCCeEEEEECCCcEEE
Confidence            99999999996 4689999999999996 567999999997654

>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}

Probab=99.71  E-value=5.4e-16  Score=153.28  Aligned_cols=226  Identities=11%  Similarity=0.070  Sum_probs=153.3

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcceEEEecC-------------------CCeEEecCCceecCCCCCchHHHHH
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWVRSVQSP-------------------EGLIFEKGPRTIRPKGRLGANTLKL  141 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~-------------------~G~~~D~Ga~~~~~~~~~~~~l~~l  141 (350)
                      ++|+++|.   ++|++|+|+|+++++||++.++...                   .+|.+|++|+++....    .+.++
T Consensus        30 ~~g~~~a~~l~~~g~~v~~~e~~~~~Gg~~~s~~~~~l~~~~~~g~~~~~~~g~~R~y~iDL~P~~l~~~g----~L~~l  105 (475)
T 3p1w_A           30 LKECILSGLLSHYGKKILVLDRNPYYGGETASLNLTNLYNTFKPKENIPSKYGENRHWNVDLIPKFILVGG----NLVKI  105 (475)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCTTSCCCGGGCCGGGCCEESSCCBEETTS----HHHHH
T ss_pred             HHHHHHHHHHHHCCCcEEEEeccCCCCCCccccchhhhhhhcccCCCcccccccccceEEeecCeEeecCc----HHHHH
Confidence            48888887   6899999999999999999998631                   1578999999987554    79999


Q ss_pred             HHHcCCCCcccccCCCCCCCcceEEEe---------CCeEEECCCChhhhcccCCCCCHHHHHHHHH---Hhhc---C--
Q psy7666         142 VEDLGLADQVIPITSSHPTAQNRLIYV---------NKKLHKLPSNFFSLFKTHSPFSKPLIFSILH---DLTT---K--  204 (350)
Q Consensus       142 ~~elGl~~~l~~~~~~~p~~~~~~i~~---------~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~---~~~~---~--  204 (350)
                      +.+.|+...+.+..    . ...|++.         +|+.+++|.+..++++. +.+++.++.++++   ....   .  
T Consensus       106 L~~~gv~~ylef~~----~-~~~y~~~~~~~~~~~~~g~~~~VPss~~e~~~~-~lLs~~eK~~l~kFL~~l~~~~~~~~  179 (475)
T 3p1w_A          106 LKKTRVTNYLEWLV----V-EGSYVYQHQKKGFLTSEKFIHKVPATDMEALVS-PLLSLMEKNRCKNFYQYVSEWDANKR  179 (475)
T ss_dssp             HHHTTCGGGSCEEE----C-SEEEEEEEECCCSSSCCEEEEECCCSHHHHHTC-TTSCHHHHHHHHHHHHHHHHCCTTCG
T ss_pred             HHHCCchheeEEEe----c-CcceEEecCccccccCCCceEeCCCCHHHHhhc-cCCCHHHHHHHHHHHHHHHhhhhccc
Confidence            99999987655532    1 2355554         57788999887777665 5677655554332   2211   0  


Q ss_pred             --CC--CCCCCcHHHHHHHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCC
Q psy7666         205 --TV--PKSDESIYDFVSRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDL  279 (350)
Q Consensus       205 --~~--~~~~~Sv~~~l~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~  279 (350)
                        +.  ..++.|+.+|+++. +...+.+.++.++.-. ...+..+.++...+..+..+.       .++. .        
T Consensus       180 ~~~~~~~l~~~s~~e~l~~~gls~~l~~fl~~alaL~-~~~~~~~~~a~~~l~ri~~y~-------~Sl~-~--------  242 (475)
T 3p1w_A          180 NTWDNLDPYKLTMLEIYKHFNLCQLTIDFLGHAVALY-LNDDYLKQPAYLTLERIKLYM-------QSIS-A--------  242 (475)
T ss_dssp             GGSTTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCC-SSSGGGGSBHHHHHHHHHHHH-------HHHH-H--------
T ss_pred             hhhhcccccCCCHHHHHHHcCCCHHHHHHHHHHHHhh-cCCCcccCCHHHHHHHHHHHH-------HHHh-h--------
Confidence              11  23578999999874 5566666444443222 122334456655555443221       1111 0        


Q ss_pred             CCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEE-eCCe-EEEEeCCCceec
Q psy7666         280 SGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEF-LEKG-VKAVDQPIHQMT  349 (350)
Q Consensus       280 ~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~-~~~g-v~V~~~~G~~~~  349 (350)
                              |     ....+.+++||++.|+++|++.+. .|++|+++++|++|.. ++++ +.|.+.+|++++
T Consensus       243 --------y-----g~s~~~yp~gG~~~L~~aL~r~~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~  302 (475)
T 3p1w_A          243 --------F-----GKSPFIYPLYGLGGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAY  302 (475)
T ss_dssp             --------H-----SSCSEEEETTCTTHHHHHHHHHHHHC--CEESSCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             --------c-----CCCceEEECCCHHHHHHHHHHHHHHcCCEEEeCCeEEEEEEecCCeEEEEEECCCcEEE
Confidence                    0     122478899999999999999998 8999999999999998 4454 578888887664

>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*

Probab=99.69  E-value=9.9e-16  Score=151.04  Aligned_cols=225  Identities=9%  Similarity=0.062  Sum_probs=132.5

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCC-eE---------------Ee--------cCCceecCCCCCc
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEG-LI---------------FE--------KGPRTIRPKGRLG  135 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G-~~---------------~D--------~Ga~~~~~~~~~~  135 (350)
                      +++||+||.   ++|++|+|||+++++|||++|++. +| +.               ++        +||+++....   
T Consensus        20 G~~GL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~-~g~~~~~d~~~~~~~~~~~~~~~g~~~~~~l~P~~l~~~~---   95 (453)
T 2bcg_G           20 GITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTL-SQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANG---   95 (453)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECH-HHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSCCBEETTS---
T ss_pred             CHHHHHHHHHHHHCCCeEEEEeCCCCCCccccceec-cchhceeccCCccccCcchhcccccceeeccccceeecCc---
Confidence            349999987   689999999999999999999873 44 21               33        4444443332   


Q ss_pred             hHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCH---HHHHHHHHHhhc---C----C
Q psy7666         136 ANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSK---PLIFSILHDLTT---K----T  205 (350)
Q Consensus       136 ~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~---~~~~~~l~~~~~---~----~  205 (350)
                       .+.++++++|+...+...    +. ...+++.+|+.+.+|.+..+.+.. ..+..   ..+.+++.....   .    +
T Consensus        96 -~l~~ll~~lg~~~~l~~~----~~-~~~~~~~~g~~~~~p~~~~~~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~p~~~  168 (453)
T 2bcg_G           96 -ELTNILIHTDVTRYVDFK----QV-SGSYVFKQGKIYKVPANEIEAISS-PLMGIFEKRRMKKFLEWISSYKEDDLSTH  168 (453)
T ss_dssp             -HHHHHHHHHTGGGTCCEE----EC-CCEEEEETTEEEECCSSHHHHHHC-TTSCHHHHHHHHHHHHHHHHCBTTBGGGS
T ss_pred             -HHHHHHHhcCCccceEEE----Ec-cceeEEeCCeEEECCCChHHHHhh-hccchhhHHHHHHHHHHHHHhccCCchhh
Confidence             899999999986533221    11 246777899999998873322221 12222   122333332211   0    0


Q ss_pred             --CCCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCc-ccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCc
Q psy7666         206 --VPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDA-KKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGY  282 (350)
Q Consensus       206 --~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~-~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~  282 (350)
                        ...+..|+.+|+++.+-......++...+. +...+. ...+....+..+..+.       ..+. .           
T Consensus       169 ~~~~~~~~s~~~~l~~~~~~~~l~~~l~~~~~-l~~~~~~~~~p~~~~~~~~~~~~-------~s~~-~-----------  228 (453)
T 2bcg_G          169 QGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMA-LWTNDDYLQQPARPSFERILLYC-------QSVA-R-----------  228 (453)
T ss_dssp             TTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTS-CCSSSGGGGSBHHHHHHHHHHHH-------HHHH-H-----------
T ss_pred             hccccccCCHHHHHHHhCCCHHHHHHHHHHHH-hccCccccCCchHHHHHHHHHHH-------HHHH-h-----------
Confidence              124678999999875443334444432111 111111 1112222222111100       0110 0           


Q ss_pred             chhHHHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEe--CCeE-EEEeCCCceec
Q psy7666         283 EESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFL--EKGV-KAVDQPIHQMT  349 (350)
Q Consensus       283 ~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~--~~gv-~V~~~~G~~~~  349 (350)
                           |     ....+.++.||++.|+++|++.+. .|++|+++++|++|..+  ++++ .|.+ +|++++
T Consensus       229 -----~-----~~~~~~~p~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~-~g~~~~  288 (453)
T 2bcg_G          229 -----Y-----GKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKT-KLGTFK  288 (453)
T ss_dssp             -----H-----SSCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEE-TTEEEE
T ss_pred             -----h-----cCCceEeeCCCHHHHHHHHHHHHHHcCCEEECCCEEEEEEEECCCCeEEEEEE-CCeEEE
Confidence                 0     012355899999999999999998 89999999999999998  6764 4555 466554

>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*

Probab=99.68  E-value=5.1e-16  Score=151.22  Aligned_cols=216  Identities=15%  Similarity=0.175  Sum_probs=144.1

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCC---CeEEecCCceecCC-CCCchHHHHHHHHcCCCCccccc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPE---GLIFEKGPRTIRPK-GRLGANTLKLVEDLGLADQVIPI  154 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~---G~~~D~Ga~~~~~~-~~~~~~l~~l~~elGl~~~l~~~  154 (350)
                      ++++||+||+   ++|++|+|+|+++++||++.+.. .+   |..+|.|++|+++. ++   .++++++++|++..... 
T Consensus         9 aG~aGl~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~-~~cipg~~~~~g~~~~~~~~~~---~~~~~~~~~g~~~~~~~-   83 (431)
T 3k7m_X            9 GGFSGLKAARDLTNAGKKVLLLEGGERLGGRAYSRE-SRNVPGLRVEIGGAYLHRKHHP---RLAAELDRYGIPTAAAS-   83 (431)
T ss_dssp             CBHHHHHHHHHHHHTTCCEEEECSSSSSBTTCCEEE-CSSSTTCEEESSCCCBCTTTCH---HHHHHHHHHTCCEEECC-
T ss_pred             CcHHHHHHHHHHHHcCCeEEEEecCCCccCeeccee-ccCCCCceEecCCeeeCCCCcH---HHHHHHHHhCCeeeecC-
Confidence            3459999997   67999999999999999999998 46   99999999999877 65   89999999999643221 


Q ss_pred             CCCCCCCcceEEE--eCCeEEEC---CCChhhhcccCCCCCHHHHHHHHHHh--hc---C----C-CCCCCCcHHHHHHH
Q psy7666         155 TSSHPTAQNRLIY--VNKKLHKL---PSNFFSLFKTHSPFSKPLIFSILHDL--TT---K----T-VPKSDESIYDFVSR  219 (350)
Q Consensus       155 ~~~~p~~~~~~i~--~~g~~~~~---p~~~~~~~~~~~~l~~~~~~~~l~~~--~~---~----~-~~~~~~Sv~~~l~~  219 (350)
                          +.  ...++  .+++....   +......+       ......+....  +.   +    . ...+ .|+.+|+.+
T Consensus        84 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~~~~~~~~~~~~~~~d-~s~~~~l~~  149 (431)
T 3k7m_X           84 ----EF--TSFRHRLGPTAVDQAFPIPGSEAVAV-------EAATYTLLRDAHRIDLEKGLENQDLEDLD-IPLNEYVDK  149 (431)
T ss_dssp             ----CC--CEECCBSCTTCCSSSSCCCGGGHHHH-------HHHHHHHHHHHTTCCTTTCTTSSSCGGGC-SBHHHHHHH
T ss_pred             ----CC--CcEEEEecCCeecCCCCCCHHHHHHH-------HHHHHHHHHHHHhcCCCCCccCcchhhhc-CCHHHHHHh
Confidence                11  11222  23322111   11100000       00111111111  00   0    0 1123 899999988


Q ss_pred             hhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHH-HHHHhhhcCCCCCCcchhHHHHhhhcccceE
Q psy7666         220 RFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKG-AIKEMMSKRPDLSGYEESELYRRSRIEKWSV  298 (350)
Q Consensus       220 ~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g-~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~  298 (350)
                      .........++.+++.+.++.+++++|+...+..+..    .+..+.. +.                         ....
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~----~~~~~~~~~~-------------------------~~~~  200 (431)
T 3k7m_X          150 LDLPPVSRQFLLAWAWNMLGQPADQASALWMLQLVAA----HHYSILGVVL-------------------------SLDE  200 (431)
T ss_dssp             HTCCHHHHHHHHHHHHHHHSSCTTTSBHHHHHHHHHH----TTSCHHHHHH-------------------------TCCE
T ss_pred             cCCCHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHh----cCCccceeec-------------------------chhh
Confidence            7666666677888888889999999998776543321    1111111 11                         0112


Q ss_pred             EEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         299 WSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       299 ~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                       .+.+|++.+++++++.+  | +|++|++|++|++++++|.|++.+|++++
T Consensus       201 -~~~~g~~~l~~~~~~~~--g-~i~~~~~V~~i~~~~~~v~v~~~~g~~~~  247 (431)
T 3k7m_X          201 -VFSNGSADLVDAMSQEI--P-EIRLQTVVTGIDQSGDVVNVTVKDGHAFQ  247 (431)
T ss_dssp             -EETTCTHHHHHHHHTTC--S-CEESSCCEEEEECSSSSEEEEETTSCCEE
T ss_pred             -hcCCcHHHHHHHHHhhC--C-ceEeCCEEEEEEEcCCeEEEEECCCCEEE
Confidence             78999999999999876  4 99999999999998889999999998654

>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}

Probab=99.64  E-value=9.6e-16  Score=147.42  Aligned_cols=70  Identities=24%  Similarity=0.387  Sum_probs=59.6

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecC-CCCCcceEEEec---------CCCeEEecCCceecCCCCCchHHHHH
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESS-SRLGGWVRSVQS---------PEGLIFEKGPRTIRPKGRLGANTLKL  141 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~-drvGGRi~T~~~---------~~G~~~D~Ga~~~~~~~~~~~~l~~l  141 (350)
                      ++|+||    |||+||+   ++|++|+|||++ +++|||+.|++.         .+|+.+|.|++++...++   .++++
T Consensus        45 ~~V~IIGAGiaGL~aA~~L~~~G~~V~VlE~~~~~vGGr~~t~~~~~~~~~~~~~~~~~~e~G~~~~~~~~~---~~~~~  121 (376)
T 2e1m_A           45 KRILIVGAGIAGLVAGDLLTRAGHDVTILEANANRVGGRIKTFHAKKGEPSPFADPAQYAEAGAMRLPSFHP---LTLAL  121 (376)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTSCEEEEECSCSSCCBTTCCEECCCTTSCCSSSSTTCCEESSCCCEETTCH---HHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCcEEEEeccccccCCceeeecccccccccccCCCcEEecCceeecchHH---HHHHH
Confidence            456555    9999997   679999999999 999999999983         157899999999977665   89999


Q ss_pred             HHHcCCCCcc
Q psy7666         142 VEDLGLADQV  151 (350)
Q Consensus       142 ~~elGl~~~l  151 (350)
                      ++++|+....
T Consensus       122 ~~~lGl~~~~  131 (376)
T 2e1m_A          122 IDKLGLKRRL  131 (376)
T ss_dssp             HHHTTCCEEE
T ss_pred             HHHcCCCcce
Confidence            9999997644

>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*

Probab=99.63  E-value=3.1e-17  Score=162.71  Aligned_cols=221  Identities=16%  Similarity=0.228  Sum_probs=126.8

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecC----------------CCeEEecCCceecCCCCCc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSP----------------EGLIFEKGPRTIRPKGRLG  135 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~----------------~G~~~D~Ga~~~~~~~~~~  135 (350)
                      ++|+||    |||+||+   ++|++|+|||+++++|||++|.+..                +|..+|.|++++...+   
T Consensus        12 ~~v~IIGaG~aGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~---   88 (489)
T 2jae_A           12 HSVVVLGGGPAGLCSAFELQKAGYKVTVLEARTRPGGRVWTARGGSEETDLSGETQKCTFSEGHFYNVGATRIPQSH---   88 (489)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEETTCEEECTTSCEEECCCCTTCEEESSCCCEETTS---
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeccCCCCCceeeeccCcccccccchhhhhcccCCCcCCcchhhcccHH---
Confidence            445554    9999997   6799999999999999999998842                5789999999997543   


Q ss_pred             hHHHHHHHHcCCCCcccccCCCCCCCcceEEE-eC-----CeEEECCCChhhhcccCCCCCHHHHHHHHHHhhc-----C
Q psy7666         136 ANTLKLVEDLGLADQVIPITSSHPTAQNRLIY-VN-----KKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTT-----K  204 (350)
Q Consensus       136 ~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~-~~-----g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~-----~  204 (350)
                       .+.++++++|++.+...     +.....+++ .+     |+...++.....+..        .+..++.....     .
T Consensus        89 -~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~--------~~~~l~~~~~~~~~~~~  154 (489)
T 2jae_A           89 -ITLDYCRELGVEIQGFG-----NQNANTFVNYQSDTSLSGQSVTYRAAKADTFG--------YMSELLKKATDQGALDQ  154 (489)
T ss_dssp             -THHHHHHHHTCCEEEEC-----CCCTTSEEECCCSSTTTTCCEEHHHHHHHHHH--------HHHHHHHHHHHHTTTTT
T ss_pred             -HHHHHHHHcCCceEEcc-----ccCCCceEEecCCcccCCccccHHHHhhhhhc--------cHHHHHHHHHhcccccc
Confidence             79999999999653332     122335665 55     554443321111100        01111111100     0


Q ss_pred             -CCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCccc----------ccHHHHHHHHHHHHHhccchHHHHHHHhh
Q psy7666         205 -TVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKK----------ISVNFLMAKLFELEQLHGGVIKGAIKEMM  273 (350)
Q Consensus       205 -~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~----------lS~~~~l~~~~~~~~~~gs~l~g~~~~~~  273 (350)
                       ....+++|+.+|+++ ++....+..+.+.....|..++..          ..+..    +..     ..+. .++... 
T Consensus       155 ~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-----~~~~-~~~~~~-  222 (489)
T 2jae_A          155 VLSREDKDALSEFLSD-FGDLSDDGRYLGSSRRGYDSEPGAGLNFGTEKKPFAMQE----VIR-----SGIG-RNFSFD-  222 (489)
T ss_dssp             TSCHHHHHHHHHHHHH-HTTCCTTSCCCCCGGGCEEECCCBTTCCCEECCCCCHHH----HHH-----HTTT-TTGGGG-
T ss_pred             ccchhhHHHHHHHHHH-hhhhhhccccccccchhhccCCCcccccCCCCCCcCHHH----Hhh-----hhHH-HHHhhh-
Confidence             011234588999886 443211101111111111111000          01110    000     0000 000000 


Q ss_pred             hcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         274 SKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       274 ~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                                      .......++++++||+++|+++|++.|+ .++|++|++|++|.+++++|.|++.+|
T Consensus       223 ----------------~~~~~~~~~~~~~gG~~~l~~~l~~~l~-~~~i~~~~~V~~i~~~~~~v~v~~~~g  277 (489)
T 2jae_A          223 ----------------FGYDQAMMMFTPVGGMDRIYYAFQDRIG-TDNIVFGAEVTSMKNVSEGVTVEYTAG  277 (489)
T ss_dssp             ----------------GCTTTSSSEEEETTCTTHHHHHHHHHHC-GGGEETTCEEEEEEEETTEEEEEEEET
T ss_pred             ----------------hccccCccEEeecCCHHHHHHHHHHhcC-CCeEEECCEEEEEEEcCCeEEEEEecC
Confidence                            0001133578999999999999999995 268999999999999999999988876

>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase, oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays} SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A* 1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*

Probab=99.60  E-value=4e-15  Score=147.10  Aligned_cols=223  Identities=11%  Similarity=0.090  Sum_probs=131.3

Q ss_pred             ehhhHhHhhh---cCCC-CEEEEecCCCCCcceEEEecCCCeEEecCCceecCCC-CCchHHHHHHHH-cCCCCcccccC
Q psy7666          82 LVIRILCTVL---RIST-PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKG-RLGANTLKLVED-LGLADQVIPIT  155 (350)
Q Consensus        82 ~viaGLaaA~---~~G~-~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~-~~~~~l~~l~~e-lGl~~~l~~~~  155 (350)
                      ++++||++|+   ++|+ +|+|+|+++++|||+++... +|+.+|+|++|+++.. +..+++++++++ +|+......  
T Consensus        12 ~G~~g~~~a~~l~~~g~~~v~~~e~~~~~gg~~~~~~~-~~~~~d~g~~~~~~~~~~~~~~~~~~~~~~lgl~~~~~~--   88 (472)
T 1b37_A           12 AGMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTNF-AGINVELGANWVEGVNGGKMNPIWPIVNSTLKLRNFRSD--   88 (472)
T ss_dssp             CBHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEEE-TTEEEESSCCEEEEESSSSCCTHHHHHHTTSCCCEEECC--
T ss_pred             CCHHHHHHHHHHHhcCCCceEEEeCCCCCCCceeeccc-CCcEEeeCCeEEeccCCCCCCHHHHHHHhhcCCceeecc--
Confidence            3459999997   5798 89999999999999999994 8999999999997311 012379999999 999652211  


Q ss_pred             CCCCCCcceEEE-eCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhh--cCCCCCCCCcHHH--HHHHhhC---hHHHH
Q psy7666         156 SSHPTAQNRLIY-VNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLT--TKTVPKSDESIYD--FVSRRFG---SEVAD  227 (350)
Q Consensus       156 ~~~p~~~~~~i~-~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~--~~~~~~~~~Sv~~--~l~~~~~---~~~~~  227 (350)
                         .......++ .+|+.++.+. ....+..     ......+...+.  .+....++.|+.+  ++.+...   ....+
T Consensus        89 ---~~~~~~~~~~~~g~~~~~~~-~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~~~~~~~~~~~~  159 (472)
T 1b37_A           89 ---FDYLAQNVYKEDGGVYDEDY-VQKRIEL-----ADSVEEMGEKLSATLHASGRDDMSILAMQRLNEHQPNGPATPVD  159 (472)
T ss_dssp             ---CTTGGGCEECSSSSBCCHHH-HHHHHHH-----HHHHHHHHHHHHHTSCTTCTTCCBHHHHHHHHHTSSSSCCSHHH
T ss_pred             ---CccccceeEcCCCCCCCHHH-HHHHHHH-----HHHHHHHHHHHHHhhccccchhhhHHHHHHHhhhcccccccHHH
Confidence               111222333 3555432211 0001000     001111111111  1112345677764  4544331   12233


Q ss_pred             HHHHHhhh-hcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHH
Q psy7666         228 YAVSSMIC-GICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQ  306 (350)
Q Consensus       228 ~~~~pl~~-~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~  306 (350)
                      .++.+++. ..++.+++..|+...++.            ..+. .. .                   ....+..+.||++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~s~~~~~~~------------~~~~-~~-~-------------------~~~~~~~~~gG~~  206 (472)
T 1b37_A          160 MVVDYYKFDYEFAEPPRVTSLQNTVPL------------ATFS-DF-G-------------------DDVYFVADQRGYE  206 (472)
T ss_dssp             HHHHHHHTHHHHSSCGGGBBSTTTSSC------------HHHH-HH-C-------------------SEEEEECCTTCTT
T ss_pred             HHHHHHHHhhhhcccccccchhhcccc------------cccc-cc-C-------------------CceeeeecCCcHH
Confidence            45555442 234556666654322110            0110 00 0                   0111233489999


Q ss_pred             HHHHHHHHhhc-C--------CCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         307 TIVNTLGEHLS-N--------KVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       307 ~L~~aLa~~L~-~--------g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +|+++|++.+. .        |++|+++++|++|.+++++|.|++.+|++++
T Consensus       207 ~l~~~l~~~l~~~~~~~~~i~~~~i~~~~~V~~i~~~~~~v~v~~~~g~~~~  258 (472)
T 1b37_A          207 AVVYYLAGQYLKTDDKSGKIVDPRLQLNKVVREIKYSPGGVTVKTEDNSVYS  258 (472)
T ss_dssp             HHHHHHHHTTSCBCTTTCCBCCTTEESSCCEEEEEECSSCEEEEETTSCEEE
T ss_pred             HHHHHHHHhccccccccccccccEEEcCCEEEEEEEcCCcEEEEECCCCEEE
Confidence            99999999986 3        5789999999999999889999999997664

>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction mechanism, sustrat binding, oxidoreductase; HET: NAG FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP: c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A* 1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*

Probab=99.57  E-value=1.9e-14  Score=142.88  Aligned_cols=215  Identities=14%  Similarity=0.208  Sum_probs=127.8

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEec-CCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQS-PEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~-~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      +++||+||+   ++|++|+|||+++++|||+.|.+. .+|+.+|+|+++++..++   .+.++++++|+......     
T Consensus        42 G~~Gl~aA~~l~~~g~~v~vlE~~~~~gg~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~~~~~~~g~~~~~~~-----  113 (498)
T 2iid_A           42 GMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHR---IVREYIRKFDLRLNEFS-----  113 (498)
T ss_dssp             BHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCH---HHHHHHHHTTCCEEEEC-----
T ss_pred             CHHHHHHHHHHHhCCCeEEEEECCCCCCCceeeeccCCCCchhhcCcccccchHH---HHHHHHHHhCCCceeec-----
Confidence            349999997   569999999999999999999873 268999999999976554   89999999999643221     


Q ss_pred             CCCcceEEEeCCeEEECCCCh--hhhccc-CC----CCCHHHHH-----HHHHHhhcC-----CCCCCCCcHHHHHHHh-
Q psy7666         159 PTAQNRLIYVNKKLHKLPSNF--FSLFKT-HS----PFSKPLIF-----SILHDLTTK-----TVPKSDESIYDFVSRR-  220 (350)
Q Consensus       159 p~~~~~~i~~~g~~~~~p~~~--~~~~~~-~~----~l~~~~~~-----~~l~~~~~~-----~~~~~~~Sv~~~l~~~-  220 (350)
                      +.....+++.+|.....+.-.  ...+.. +.    .....++.     +++.++...     ....++.|+.+|+++. 
T Consensus       114 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~  193 (498)
T 2iid_A          114 QENDNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKEG  193 (498)
T ss_dssp             SCCTTSEEEETTEEEEHHHHHHCGGGGCCCCCGGGTTCCHHHHHHHHTHHHHHHHHHSCHHHHHHHHTTSBHHHHHHHTS
T ss_pred             ccCCccEEEeCCeeecccccccCccccccCCCccccCCCHHHHHHHHHHHHHHHHhhccHHHHHHHhhhhhHHHHHHHcc
Confidence            122345666677644321100  000000 00    00111111     111111000     0113567899998864 


Q ss_pred             -hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHH-hhhcCCCCCCcchhHHHHhhhcccceE
Q psy7666         221 -FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKE-MMSKRPDLSGYEESELYRRSRIEKWSV  298 (350)
Q Consensus       221 -~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~-~~~~~~~~~~~~~~~~y~~~~~~~~~~  298 (350)
                       ++....+ ++..++....   ....+.                 ..++... .+                   .....+
T Consensus       194 ~~~~~~~~-~~~~~~~~~~---~~~~~~-----------------~~~~~~~~~~-------------------~~~~~~  233 (498)
T 2iid_A          194 DLSPGAVD-MIGDLLNEDS---GYYVSF-----------------IESLKHDDIF-------------------AYEKRF  233 (498)
T ss_dssp             CCCHHHHH-HHHHHTTCGG---GTTSBH-----------------HHHHHHHHHH-------------------TTCCCE
T ss_pred             CCCHHHHH-HHHHhcCccc---chhHHH-----------------HHHHHHHhcc-------------------ccCcce
Confidence             2333333 2222221100   000110                 0111000 00                   012246


Q ss_pred             EEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCce
Q psy7666         299 WSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQ  347 (350)
Q Consensus       299 ~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~  347 (350)
                      +++.||+++|+++|++.++  .+|++|++|++|.+++++|.|++.+|+.
T Consensus       234 ~~~~gG~~~l~~~l~~~l~--~~i~~~~~V~~I~~~~~~v~v~~~~~~~  280 (498)
T 2iid_A          234 DEIVDGMDKLPTAMYRDIQ--DKVHFNAQVIKIQQNDQKVTVVYETLSK  280 (498)
T ss_dssp             EEETTCTTHHHHHHHHHTG--GGEESSCEEEEEEECSSCEEEEEECSSS
T ss_pred             EEeCCcHHHHHHHHHHhcc--cccccCCEEEEEEECCCeEEEEEecCCc
Confidence            7899999999999999996  4899999999999998899998887763

>4gut_A Lysine-specific histone demethylase 1B; histone demethylase; HET: FAD PGE; 2.00A {Homo sapiens} PDB: 4gur_A* 4gus_A* 4guu_A* 4fwe_A* 4fwf_A* 4fwj_A* 4gu1_A*

Probab=99.46  E-value=2.1e-13  Score=142.51  Aligned_cols=229  Identities=14%  Similarity=0.199  Sum_probs=125.6

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV  151 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l  151 (350)
                      .+|+||    +||+||+   ++|++|+|+|+++++|||++|....+|+.+|+|++|+++..  .+.+..+++++|++...
T Consensus       337 ~~v~viG~G~~Gl~aA~~l~~~g~~v~v~E~~~~~ggri~T~~~~~G~~vd~Ga~~i~G~~--~np~~~l~~~lGl~~~~  414 (776)
T 4gut_A          337 KSVIIIGAGPAGLAAARQLHNFGIKVTVLEAKDRIGGRVWDDKSFKGVTVGRGAQIVNGCI--NNPVALMCEQLGISMHK  414 (776)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTTCCEECCSTTCCEESSCCEEECCT--TCHHHHHHHHHTCCCEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEecccceeceeeeccccCCeEeccCCeEEeCCc--cChHHHHHHHhCCcccc
Confidence            455555    9999997   56999999999999999999987447999999999998754  34899999999996532


Q ss_pred             cccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHHHHH
Q psy7666         152 IPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVS  231 (350)
Q Consensus       152 ~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~  231 (350)
                      ..       ....++..+|...  .........    .....+...+..+........+.++.+++.+.+..     ++.
T Consensus       415 ~~-------~~~~l~~~~g~~~--~~~~~~~~~----~~~~~ll~~~~~~~~~~~~~~d~sl~~~~~~~~~~-----~l~  476 (776)
T 4gut_A          415 FG-------ERCDLIQEGGRIT--DPTIDKRMD----FHFNALLDVVSEWRKDKTQLQDVPLGEKIEEIYKA-----FIK  476 (776)
T ss_dssp             CC-------SCCCEECTTSCBC--CHHHHHHHH----HHHHHHHHHHHHHGGGCCGGGCCBHHHHHHHHHHH-----HHH
T ss_pred             cc-------cccceEccCCccc--chhHHHHHH----HHHHHHHHHHHHHhhcccccccccHHHHHHHHHHH-----HHH
Confidence            21       1123333333321  000000000    00011112222222112223567788877653321     111


Q ss_pred             HhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcch-hHHHHhhhcccceEEEecCcHHHHHH
Q psy7666         232 SMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEE-SELYRRSRIEKWSVWSVEGGLQTIVN  310 (350)
Q Consensus       232 pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~-~~~y~~~~~~~~~~~~~~GG~~~L~~  310 (350)
                      .     .+.+...+....+...+...+...++.+..+        ...  ..+ ...|   .........+.+|++.+++
T Consensus       477 ~-----~gv~~~~l~~~~l~~~~~~l~~~~G~~l~~l--------s~~--~~~~~~~~---~~~~G~~~~~~~G~~~l~~  538 (776)
T 4gut_A          477 E-----SGIQFSELEGQVLQFHLSNLEYACGSNLHQV--------SAR--SWDHNEFF---AQFAGDHTLLTPGYSVIIE  538 (776)
T ss_dssp             H-----SCCCCCHHHHHHHHHHHHHHHHHHTSCTTSB--------BTT--TTTGGGGS---CCCCSCEEECTTCTHHHHH
T ss_pred             h-----cCCCccchhHHHHHHHHHHHHHhcCCChHHc--------Chh--hhhhhhhH---HhcCCCeEEECChHHHHHH
Confidence            1     1112221111111000011111111100000        000  000 0000   0112345678999999999


Q ss_pred             HHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         311 TLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       311 aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +|++.+    +|++|++|++|++++++|+|++.+|++++
T Consensus       539 aLa~gl----~I~l~t~V~~I~~~~~~v~V~~~~G~~i~  573 (776)
T 4gut_A          539 KLAEGL----DIQLKSPVQCIDYSGDEVQVTTTDGTGYS  573 (776)
T ss_dssp             HHHTTS----CEESSCCEEEEECSSSSEEEEETTCCEEE
T ss_pred             HHHhCC----cEEcCCeeEEEEEcCCEEEEEECCCcEEE
Confidence            998754    79999999999999889999999997664

>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A* 2xas_A* 2com_A

Probab=99.41  E-value=1.4e-12  Score=137.22  Aligned_cols=68  Identities=19%  Similarity=0.311  Sum_probs=58.1

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCC
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLAD  149 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~  149 (350)
                      ++|+||    +||+||+   ++|++|+|||+++++|||+.|++ ..|+.+|+|++|+++..  ++.+..+.+++|+..
T Consensus       279 ~~v~viG~G~aGl~~A~~l~~~g~~v~v~E~~~~~GG~~~~~~-~~~~~~~~G~~~~~~~~--~~~~~~l~~~lg~~~  353 (852)
T 2xag_A          279 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLG--GNPMAVVSKQVNMEL  353 (852)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSCTTCCEEE-ETTEEEESSCCEECCSB--TCHHHHHHHHTTCCE
T ss_pred             CeEEEECCCHHHHHHHHHHHHCCCcEEEEEecCcCCCceeeec-ccccchhcCceEecCCC--CchHHHHHHHhCCch
Confidence            456665    9999998   68999999999999999999999 48999999999997642  347889999999853

>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome, transcription, LSD1, alternative splicing, chromatin regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens} SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A* 3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A* 2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A

Probab=99.39  E-value=2.5e-12  Score=132.58  Aligned_cols=68  Identities=19%  Similarity=0.311  Sum_probs=58.0

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCC
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLAD  149 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~  149 (350)
                      ++|+||    +||+||+   ++|++|+|||+++++||++.|++ ..|+.+|+|++|+++..  ++.+..+.+++|++.
T Consensus       108 ~~v~viG~G~~gl~~a~~l~~~g~~v~~~e~~~~~gg~~~~~~-~~~~~~~~G~~~~~~~~--~~~~~~l~~~l~~~~  182 (662)
T 2z3y_A          108 GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLG--GNPMAVVSKQVNMEL  182 (662)
T ss_dssp             CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEE-ETTEEEESSCCEECCSB--TCHHHHHHHHHTCCE
T ss_pred             CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCcccccc-ccCchhhcCcEEEeCCC--CchHHHHHHHhCcch
Confidence            556665    9999997   68999999999999999999999 48999999999997642  347889999999853

>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase, flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE; 1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A* 2yr5_A* 3ayl_A*

Probab=99.37  E-value=3.2e-12  Score=131.70  Aligned_cols=68  Identities=15%  Similarity=0.230  Sum_probs=57.6

Q ss_pred             ceeehh----hHhHhhh---cCC--------CCEEEEecCC-CC----------------CcceEEEecC------CCeE
Q psy7666          79 LLLLVI----RILCTVL---RIS--------TPITLLESSS-RL----------------GGWVRSVQSP------EGLI  120 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G--------~~VtVlEa~d-rv----------------GGRi~T~~~~------~G~~  120 (350)
                      ++|+||    |||+||+   ++|        ++|+|||+++ |+                |||+.|.+..      +++.
T Consensus        57 ~~v~IiGaGiaGL~aA~~L~~~g~~~~~~~~~~V~v~E~~~~r~~~~~~g~~~~~~~g~~GGr~~t~~~~~~~~~~~~~~  136 (721)
T 3ayj_A           57 YRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDSFLHDRPGIKAIKVRGLKAGRVSAALVHNGDPASGDTI  136 (721)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHTTSCTTCEEEEEEECCCTTBGGGCC----CEECTTCEETTEEEEEECSSCGGGCSEE
T ss_pred             CeEEEECCCHHHHHHHHHHHHcCcccccCCCceEEEEeccCcccccccchhhHHHhcCcCCceEEEEEccCCcccCCCcE
Confidence            456554    9999997   457        9999999999 99                9999999752      4689


Q ss_pred             EecCCceecCCCCCchHHHHHHHHc-CCCC
Q psy7666         121 FEKGPRTIRPKGRLGANTLKLVEDL-GLAD  149 (350)
Q Consensus       121 ~D~Ga~~~~~~~~~~~~l~~l~~el-Gl~~  149 (350)
                      +|+|+++|.+.++   .++++++++ |+++
T Consensus       137 ~e~G~~~~~~~~~---~~~~~~~~l~gl~~  163 (721)
T 3ayj_A          137 YEVGAMRFPEIAG---LTWHYASAAFGDAA  163 (721)
T ss_dssp             EECSCCCEETTCH---HHHHHHHHHHCTTC
T ss_pred             EecCCEEecCccH---HHHHHHHHhcCCcc
Confidence            9999999987765   899999999 9963

>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*

Probab=99.34  E-value=4.4e-11  Score=121.77  Aligned_cols=191  Identities=7%  Similarity=0.012  Sum_probs=119.8

Q ss_pred             CeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHH
Q psy7666         118 GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSI  197 (350)
Q Consensus       118 G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~  197 (350)
                      +|.||+||++++...    .+.+++.++|+...+.+..    . ...|++.+|+.+.+|.+..++++. +.+...++.++
T Consensus       223 ~f~~DL~PklL~~~g----~lv~LL~~sgV~~yLEFk~----v-~~~y~~~~G~~~~VPas~~eif~s-~~Lsl~EKr~L  292 (650)
T 1vg0_A          223 RFNIDLVSKLLYSRG----LLIDLLIKSNVSRYAEFKN----I-TRILAFREGTVEQVPCSRADVFNS-KQLTMVEKRML  292 (650)
T ss_dssp             GCCEESSCCCEESSS----HHHHHHHHHTGGGGCCEEE----C-CEEEEESSSSEEECCCSHHHHHHC-SSSCHHHHHHH
T ss_pred             CeEEeeCCeeeeCCc----HHHHHHHHcCCcceeeEEE----c-cceEEecCCCEeECCCCHHHHHhC-cCCCHHHHHHH
Confidence            567888999887654    7999999999866544421    1 246777888888999987777775 56655443333


Q ss_pred             ---HHHhhc---C---CCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHH
Q psy7666         198 ---LHDLTT---K---TVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA  268 (350)
Q Consensus       198 ---l~~~~~---~---~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~  268 (350)
                         +.....   .   +...+..|+.+|+++.+.......++...+ ++++.+  ..++...+..+..+           
T Consensus       293 ~kFl~~~~~~~~~p~~~~~~d~~S~~d~L~~~~ls~~L~~~L~~~l-al~~~~--~~pa~~~l~~i~~~-----------  358 (650)
T 1vg0_A          293 MKFLTFCVEYEEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSI-AMTSET--TSCTVDGLKATKKF-----------  358 (650)
T ss_dssp             HHHHHHHHTGGGCHHHHHTTTTSBHHHHHTTSSSCHHHHHHHHHHT-TC--CC--SCBHHHHHHHHHHH-----------
T ss_pred             HHHHHHHHHhccChHHHhhhccCCHHHHHHHhCCCHHHHHHHHHHH-hccCCC--CCchhHHHHHHHHH-----------
Confidence               222111   0   124568899999998644444444443222 333222  12332222211110           


Q ss_pred             HHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeC--CeE-EEEeCC
Q psy7666         269 IKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLE--KGV-KAVDQP  344 (350)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~--~gv-~V~~~~  344 (350)
                      ...+ ..                 ....+++++.||++.|+++|++.+. .|++|+++++|++|..++  +++ .|...+
T Consensus       359 l~sl-~~-----------------yg~sg~~yp~GG~g~L~qaL~r~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~~~~  420 (650)
T 1vg0_A          359 LQCL-GR-----------------YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQF  420 (650)
T ss_dssp             HHHT-TS-----------------SSSSSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETT
T ss_pred             HHHH-Hh-----------------hccCceEEeCCchhHHHHHHHHHHHHcCCEEEeCCEeeEEEEeCCCCeEEEEEeCC
Confidence            0000 00                 0112578999999999999999998 899999999999999887  544 455677


Q ss_pred             CceecC
Q psy7666         345 IHQMTK  350 (350)
Q Consensus       345 G~~~~~  350 (350)
                      |+++++
T Consensus       421 Ge~i~A  426 (650)
T 1vg0_A          421 GQRIIS  426 (650)
T ss_dssp             SCEEEC
T ss_pred             CCEEEc
Confidence            887753

>3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV}

Probab=98.51  E-value=9.3e-08  Score=84.11  Aligned_cols=58  Identities=17%  Similarity=0.237  Sum_probs=48.1

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHH
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVED  144 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~e  144 (350)
                      ++|||+||+   ++|++|+|||+++++|||+.+.+ ..+..+|.|++++.....   .+......
T Consensus        11 GpaGL~aA~~La~~G~~V~v~Ek~~~~GG~~~~~~-~~~~~~d~g~~~~~~~~~---~~~~~~~~   71 (336)
T 3kkj_A           11 GIAGLSAAQALTAAGHQVHLFDKSRGSGGRMSSKR-SDAGALDMGAQYFTARDR---RFATAVKQ   71 (336)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEEE-ETTEEEECSCCCBCCCSH---HHHHHHHH
T ss_pred             CHHHHHHHHHHHHCCCCEEEEECCCCCCCcccccc-cCCceeecCccccccCcH---HHHHHHHH
Confidence            349999998   68999999999999999999999 489999999999976653   44444443

>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}

Probab=98.47  E-value=3.1e-07  Score=86.25  Aligned_cols=49  Identities=12%  Similarity=0.141  Sum_probs=43.8

Q ss_pred             EEEecCcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666         298 VWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM  348 (350)
Q Consensus       298 ~~~~~GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~  348 (350)
                      .+...+|+++++++|++.+  |++|+++++|++|++++++|.|++.+|+++
T Consensus       104 ~~~~~~g~~~l~~~l~~~~--g~~i~~~~~V~~i~~~~~~~~v~~~~g~~~  152 (342)
T 3qj4_A          104 NFVAPQGISSIIKHYLKES--GAEVYFRHRVTQINLRDDKWEVSKQTGSPE  152 (342)
T ss_dssp             EEECTTCTTHHHHHHHHHH--TCEEESSCCEEEEEECSSSEEEEESSSCCE
T ss_pred             ceecCCCHHHHHHHHHHhc--CCEEEeCCEEEEEEEcCCEEEEEECCCCEE
Confidence            4667899999999999988  489999999999999988999999988754

>3fpz_A Thiazole biosynthetic enzyme; FAD, mitochondrion, N thiamine biosynthesis, transit peptide, biosynthetic protei; HET: AHZ; 1.82A {Saccharomyces cerevisiae}

Probab=95.61  E-value=0.0048  Score=57.11  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=27.9

Q ss_pred             ceeehh----hHhHhhh-----cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL-----RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~-----~~G~~VtVlEa~drvGGRi~  111 (350)
                      .+|+||    |||+||+     ++|++|+|+|+.+.+||.+.
T Consensus        66 ~DV~IIGaGPAGlsAA~~la~~r~G~~V~viEk~~~~GG~~~  107 (326)
T 3fpz_A           66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEECCCCCCceEE
Confidence            347777    9999996     35999999999999999875

>2vdc_G Glutamate synthase [NADPH] small chain; oxidoreductase, amidotransferase, ammonia assimilation, iron, zymogen; HET: OMT FMN AKG FAD; 9.50A {Azospirillum brasilense}

Probab=94.63  E-value=0.015  Score=56.75  Aligned_cols=32  Identities=22%  Similarity=0.281  Sum_probs=27.8

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      ++|+||    |||+||.   ++|++|+|+|+.+++||..
T Consensus       123 ~~V~IIGgGpAGl~aA~~L~~~G~~V~v~e~~~~~GG~l  161 (456)
T 2vdc_G          123 LSVGVIGAGPAGLAAAEELRAKGYEVHVYDRYDRMGGLL  161 (456)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSCSTHH
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCCCee
Confidence            567777    9999997   5699999999999999974

>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}

Probab=93.75  E-value=0.03  Score=52.21  Aligned_cols=27  Identities=7%  Similarity=-0.017  Sum_probs=22.7

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      +++|||+||+   ++|++|+|+|+++.+|.
T Consensus        12 aGpaGl~~A~~La~~G~~V~v~Er~~~~~~   41 (397)
T 3oz2_A           12 GGPGGSTAARYAAKYGLKTLMIEKRPEIGS   41 (397)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSSSTTC
T ss_pred             cCHHHHHHHHHHHHCCCcEEEEeCCCCCCC
Confidence            3449999997   78999999999887764

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=93.57  E-value=0.033  Score=51.93  Aligned_cols=48  Identities=6%  Similarity=0.056  Sum_probs=39.5

Q ss_pred             EEEecCc---HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         298 VWSVEGG---LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       298 ~~~~~GG---~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      .+.+.+|   ...++++|++.+. .|++|+++++|++|..++++|.|++.+|
T Consensus       143 ~~~~~~~~~~~~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g  194 (381)
T 3nyc_A          143 TYDPTGADIDTDALHQGYLRGIRRNQGQVLCNHEALEIRRVDGAWEVRCDAG  194 (381)
T ss_dssp             EEETTCEEECHHHHHHHHHHHHHHTTCEEESSCCCCEEEEETTEEEEECSSE
T ss_pred             EEcCCCceECHHHHHHHHHHHHHHCCCEEEcCCEEEEEEEeCCeEEEEeCCC
Confidence            3444444   3568888988887 8999999999999999988999998887

>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex}

Probab=93.51  E-value=0.028  Score=57.72  Aligned_cols=34  Identities=26%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      ++|+||    |||+||.   ++|++|+|+|+++++||.+..
T Consensus       392 ~~VvIIGgG~AGl~aA~~La~~G~~V~liE~~~~~GG~~~~  432 (690)
T 3k30_A          392 ARVLVVGAGPSGLEAARALGVRGYDVVLAEAGRDLGGRVTQ  432 (690)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSCTHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCEeee
Confidence            567776    9999997   569999999999999998764

>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*

Probab=93.45  E-value=0.029  Score=51.14  Aligned_cols=34  Identities=24%  Similarity=0.341  Sum_probs=28.4

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .+|+||    |||+||.   +.|++|+|+|+++.+||....
T Consensus         8 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gG~~~~   48 (332)
T 3lzw_A            8 YDITIIGGGPVGLFTAFYGGMRQASVKIIESLPQLGGQLSA   48 (332)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCCCceehh
Confidence            345555    9999997   679999999999999999854

>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}

Probab=93.41  E-value=0.039  Score=50.24  Aligned_cols=32  Identities=16%  Similarity=0.250  Sum_probs=26.0

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .|+||    |||+||.   ++|++|+|+|+ +.+||.+..
T Consensus         8 DvvIIG~GpAGl~aA~~l~~~g~~V~liE~-~~~gG~~~~   46 (312)
T 4gcm_A            8 DIAIIGAGPAGMTAAVYASRANLKTVMIER-GIPGGQMAN   46 (312)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES-SCTTGGGGG
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEec-CCCCCeeec
Confidence            36666    9999997   67999999997 578998743

>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*

Probab=93.33  E-value=0.031  Score=51.07  Aligned_cols=34  Identities=18%  Similarity=0.201  Sum_probs=27.9

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEec----CCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLES----SSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa----~drvGGRi~T  112 (350)
                      ++|+||    +||+||.   ++|++|+|+|+    ++++||.+..
T Consensus        23 ~~vvIIG~G~aGl~aA~~l~~~g~~v~vie~~~~~~~~~gg~~~~   67 (338)
T 3itj_A           23 NKVTIIGSGPAAHTAAIYLARAEIKPILYEGMMANGIAAGGQLTT   67 (338)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCCEEEEecCCCCCCCcCccccc
Confidence            456666    9999997   67999999999    5589998765

>1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A*

Probab=93.09  E-value=0.045  Score=56.59  Aligned_cols=34  Identities=12%  Similarity=0.227  Sum_probs=29.3

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      ++|+||    |||+||.   +.|++|+|+|+++++||.+..
T Consensus       390 ~~VvIIGgGpAGl~aA~~L~~~G~~Vtlie~~~~~GG~~~~  430 (729)
T 1o94_A          390 DSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQ  430 (729)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHH
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCCcCCeeee
Confidence            567777    9999997   579999999999999998754

>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}

Probab=92.70  E-value=0.054  Score=53.01  Aligned_cols=37  Identities=16%  Similarity=0.228  Sum_probs=29.5

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ  343 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~  343 (350)
                      .+.+.+.+.+. .|++|+++++|++|..+++++.|+..
T Consensus       240 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~~~v~~~  277 (491)
T 3urh_A          240 EVAKQLQRMLTKQGIDFKLGAKVTGAVKSGDGAKVTFE  277 (491)
T ss_dssp             HHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHhCCCEEEECCeEEEEEEeCCEEEEEEE
Confidence            35666666776 78999999999999998888776654

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=92.69  E-value=0.056  Score=49.91  Aligned_cols=42  Identities=5%  Similarity=-0.034  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCc
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIH  346 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~  346 (350)
                      ...+.++|++.+. .|++|+++++|++|..++++ +.|++.+|+
T Consensus       149 ~~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~  192 (369)
T 3dme_A          149 SHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGAE  192 (369)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEECTTSSEEEEECTTS
T ss_pred             HHHHHHHHHHHHHHCCCEEECCCEEEEEEEcCCceEEEEECCCc
Confidence            4568888888888 89999999999999998776 889888883

>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*

Probab=92.69  E-value=0.062  Score=51.85  Aligned_cols=34  Identities=24%  Similarity=0.203  Sum_probs=27.8

Q ss_pred             ceeehh----hHhHhhh---cCCC--CEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RIST--PITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~--~VtVlEa~drvGGRi~T  112 (350)
                      ++|+||    +||+||.   +.|.  +|+|||+++.+||....
T Consensus         7 ~dV~IIGaG~aGl~aA~~L~~~G~~~~V~v~E~~~~~GG~~~~   49 (447)
T 2gv8_A            7 RKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   49 (447)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CEEEEECccHHHHHHHHHHHhcCCCCCeEEEecCCCCCCeecC
Confidence            456666    9999987   5798  99999999999996543

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=92.56  E-value=0.075  Score=54.47  Aligned_cols=43  Identities=7%  Similarity=0.008  Sum_probs=36.9

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc-ee
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH-QM  348 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~-~~  348 (350)
                      ..++++|.+.+. .|++|+++++|++|..++++|.|.+.+|+ ++
T Consensus       412 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~~i  456 (689)
T 3pvc_A          412 SDLTHALMMLAQQNGMTCHYQHELQRLKRIDSQWQLTFGQSQAAK  456 (689)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECSSSEEEEEC-CCCCE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeEeEEEEeCCeEEEEeCCCcEEE
Confidence            668888988887 89999999999999999888999998886 44

>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}

Probab=92.54  E-value=0.046  Score=49.37  Aligned_cols=33  Identities=27%  Similarity=0.238  Sum_probs=27.0

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEE-EecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITL-LESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtV-lEa~drvGGRi~T  112 (350)
                      ++|+||    |||+||.   ++|++|+| +|+ +.+||.+..
T Consensus         5 ~~vvIIG~G~aGl~aA~~l~~~g~~v~li~e~-~~~gG~~~~   45 (315)
T 3r9u_A            5 LDVAIIGGGPAGLSAGLYATRGGLKNVVMFEK-GMPGGQITS   45 (315)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHTCSCEEEECS-SSTTGGGGG
T ss_pred             ceEEEECCCHHHHHHHHHHHHCCCCeEEEEeC-CCCCceeee
Confidence            456666    9999997   56999999 999 889998654

>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}

Probab=92.49  E-value=0.049  Score=49.88  Aligned_cols=34  Identities=12%  Similarity=0.171  Sum_probs=28.1

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .+|+||    |||+||.   +.|++|+|+|+++.+||.+..
T Consensus         6 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   46 (335)
T 2zbw_A            6 TDVLIVGAGPTGLFAGFYVGMRGLSFRFVDPLPEPGGQLTA   46 (335)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSCHHHHH
T ss_pred             CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCCCeeec
Confidence            345555    9999987   579999999999999998754

>3rp8_A Flavoprotein monooxygenase; FAD-binding protein, oxidoreductase; HET: FAD; 1.97A {Klebsiella pneumoniae} PDB: 3rp7_A* 3rp6_A*

Probab=92.45  E-value=0.057  Score=51.21  Aligned_cols=29  Identities=14%  Similarity=0.188  Sum_probs=22.9

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCC
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      .+|+||    +||++|+   ++|++|+|+|+.+.++
T Consensus        24 ~dV~IVGaG~aGl~~A~~La~~G~~V~v~E~~~~~~   59 (407)
T 3rp8_A           24 MKAIVIGAGIGGLSAAVALKQSGIDCDVYEAVKEIK   59 (407)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSCC-
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCC
Confidence            446555    9999997   6899999999987653

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=92.34  E-value=0.051  Score=52.34  Aligned_cols=32  Identities=6%  Similarity=0.171  Sum_probs=25.6

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      .+|+||    |||+||.   ++|++|+|+|+.+.+||++
T Consensus        28 ~dViIIGgG~AGl~aA~~La~~G~~V~llEk~~~~g~~~   66 (417)
T 3v76_A           28 QDVVIIGAGAAGMMCAIEAGKRGRRVLVIDHARAPGEKI   66 (417)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             CCEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCcee
Confidence            345555    9999987   6799999999999986643

>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.50A {Sulfolobus solfataricus}

Probab=92.16  E-value=0.057  Score=52.52  Aligned_cols=39  Identities=23%  Similarity=0.297  Sum_probs=30.4

Q ss_pred             HHHHHHHHHhhcCCCEEEeCcceeEEEEeC-CeEEEEeC--CCc
Q psy7666         306 QTIVNTLGEHLSNKVEVKMDTTCTNLEFLE-KGVKAVDQ--PIH  346 (350)
Q Consensus       306 ~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~-~gv~V~~~--~G~  346 (350)
                      ..+.+.+.+.+.  ++|+++++|++|..++ +++.|+..  +|+
T Consensus       214 ~~~~~~l~~~l~--v~i~~~~~v~~i~~~~~~~v~v~~~~~~G~  255 (466)
T 3l8k_A          214 QDIVNTLLSILK--LNIKFNSPVTEVKKIKDDEYEVIYSTKDGS  255 (466)
T ss_dssp             HHHHHHHHHHHC--CCEECSCCEEEEEEEETTEEEEEECCTTSC
T ss_pred             HHHHHHHHhcCE--EEEEECCEEEEEEEcCCCcEEEEEEecCCc
Confidence            346666666664  7999999999999887 78888877  565

>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*

Probab=92.01  E-value=0.042  Score=54.91  Aligned_cols=47  Identities=15%  Similarity=0.116  Sum_probs=34.6

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPR  126 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~  126 (350)
                      .+|+||    |||++|.   ++|++|+|+|+++.+||.....++ .|..+|.-.+
T Consensus        22 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GGtw~~~~y-pg~~~dv~s~   75 (549)
T 4ap3_A           22 YDVVVVGAGIAGLYAIHRFRSQGLTVRAFEAASGVGGVWYWNRY-PGARCDVESI   75 (549)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCC-TTCBCSSCTT
T ss_pred             CCEEEECchHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCC-CCceeCCCch
Confidence            346655    9999987   579999999999999997764442 4555555443

>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}

Probab=91.83  E-value=0.063  Score=49.86  Aligned_cols=34  Identities=21%  Similarity=0.268  Sum_probs=28.3

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .+|+||    +||+||.   ++|++|+|+|+.+.+||.+..
T Consensus        15 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~~   55 (360)
T 3ab1_A           15 RDLTIIGGGPTGIFAAFQCGMNNISCRIIESMPQLGGQLAA   55 (360)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCHHHHH
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCCcccc
Confidence            346655    9999987   579999999999999998754

>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*

Probab=91.82  E-value=0.093  Score=51.88  Aligned_cols=42  Identities=14%  Similarity=0.148  Sum_probs=33.3

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe----EEEEeCCCc-ee
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG----VKAVDQPIH-QM  348 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g----v~V~~~~G~-~~  348 (350)
                      .+.+.+.+.+. .|++|+++++|++|..++++    +.|++.+|+ ++
T Consensus       256 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~~~i  303 (523)
T 1mo9_A          256 ETRAYVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGEMRI  303 (523)
T ss_dssp             HHHHHHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCcEEE
Confidence            35667777777 78999999999999986665    788888886 44

>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}

Probab=91.80  E-value=0.082  Score=48.44  Aligned_cols=29  Identities=17%  Similarity=0.165  Sum_probs=25.3

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      ++||++|.   ++|++|+|+|+++.+||....
T Consensus        13 ~aGl~~A~~l~~~g~~v~vie~~~~~gg~~~~   44 (357)
T 4a9w_A           13 QSGLSAGYFLRRSGLSYVILDAEASPGGAWQH   44 (357)
T ss_dssp             HHHHHHHHHHHHSSCCEEEECCSSSSSGGGGG
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCcccC
Confidence            39999987   679999999999999998653

>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*

Probab=91.75  E-value=0.084  Score=51.38  Aligned_cols=34  Identities=9%  Similarity=0.139  Sum_probs=28.0

Q ss_pred             ceeehh----hHhHhhh---c---CCCC---EEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---R---ISTP---ITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~---~G~~---VtVlEa~drvGGRi~T  112 (350)
                      ++|+||    |||+||.   +   .|++   |+|+|+++.+||.+..
T Consensus         3 ~~V~IIGaG~aGl~aA~~L~~~~~~G~~~~~V~v~E~~~~~GG~w~~   49 (464)
T 2xve_A            3 TRIAILGAGPSGMAQLRAFQSAQEKGAEIPELVCFEKQADWGGQWNY   49 (464)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHHHTTCCCCEEEEECSSSSSCGGGSC
T ss_pred             CcEEEECccHHHHHHHHHHHhhhhcCCCCCcEEEEEcCCCCCCEeec
Confidence            346655    9999986   5   8999   9999999999998654

>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*

Probab=91.72  E-value=0.082  Score=52.08  Aligned_cols=35  Identities=20%  Similarity=0.133  Sum_probs=28.5

Q ss_pred             CcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEe-CCe
Q psy7666         303 GGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFL-EKG  337 (350)
Q Consensus       303 GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~-~~g  337 (350)
                      +|...+.+.|.+.+. .|++|+++++|++|..+ +++
T Consensus       199 ~g~~~l~~~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~  235 (510)
T 4at0_A          199 GGGYMLMKPLVETAEKLGVRAEYDMRVQTLVTDDTGR  235 (510)
T ss_dssp             CTTHHHHHHHHHHHHHTTCEEECSEEEEEEEECTTCC
T ss_pred             CCHHHHHHHHHHHHHHcCCEEEecCEeEEEEECCCCc
Confidence            344478888888887 88999999999999998 443

>4hb9_A Similarities with probable monooxygenase; flavin, structural genomics, NEW YORK structural genomics RE consortium, nysgrc, PSI; HET: MSE FAD; 1.93A {Photorhabdus luminescens}

Probab=91.67  E-value=0.078  Score=49.75  Aligned_cols=28  Identities=18%  Similarity=0.237  Sum_probs=22.4

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCC
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRL  106 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drv  106 (350)
                      ++|+||    +||++|+   ++|++|+|||+++.+
T Consensus         2 m~V~IVGaGpaGl~~A~~L~~~G~~v~v~Er~~~~   36 (412)
T 4hb9_A            2 MHVGIIGAGIGGTCLAHGLRKHGIKVTIYERNSAA   36 (412)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSS
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEecCCCC
Confidence            455554    9999997   789999999997654

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=91.61  E-value=0.11  Score=53.05  Aligned_cols=44  Identities=9%  Similarity=-0.056  Sum_probs=38.6

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ..++++|.+.+. .|++|+++++|++|..++++|.|++.+|.+++
T Consensus       417 ~~l~~aL~~~a~~~Gv~i~~~t~V~~l~~~~~~v~V~t~~G~~i~  461 (676)
T 3ps9_A          417 AELTRNVLELAQQQGLQIYYQYQLQNFSRKDDCWLLNFAGDQQAT  461 (676)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEETTSCEEE
T ss_pred             HHHHHHHHHHHHhCCCEEEeCCeeeEEEEeCCeEEEEECCCCEEE
Confidence            668888888887 78999999999999999999999998876654

>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle structural genomics center for infectious gluathione reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella henselae}

Probab=91.59  E-value=0.072  Score=52.06  Aligned_cols=42  Identities=10%  Similarity=0.152  Sum_probs=34.3

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +.+.+.+.+. .|++|+++++|++|+.+++++.|++.+|+++.
T Consensus       234 ~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~  276 (484)
T 3o0h_A          234 LRQLLNDAMVAKGISIIYEATVSQVQSTENCYNVVLTNGQTIC  276 (484)
T ss_dssp             HHHHHHHHHHHHTCEEESSCCEEEEEECSSSEEEEETTSCEEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEeeCCEEEEEECCCcEEE
Confidence            5556666666 68999999999999998888999998887653

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=91.49  E-value=0.12  Score=49.38  Aligned_cols=45  Identities=18%  Similarity=0.099  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCc---ceeEEEEeCCeEE-EEeCCCceec
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDT---TCTNLEFLEKGVK-AVDQPIHQMT  349 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~---~V~~I~~~~~gv~-V~~~~G~~~~  349 (350)
                      ...+.++|++.+. .|++|++++   +|++|..++++|. |++.+|++++
T Consensus       160 ~~~~~~~L~~~a~~~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~  209 (438)
T 3dje_A          160 ARNALVAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWR  209 (438)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEE
T ss_pred             HHHHHHHHHHHHHhcCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEE
Confidence            4668888888887 899999999   9999999988887 9999997654

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=91.46  E-value=0.097  Score=48.83  Aligned_cols=40  Identities=8%  Similarity=-0.100  Sum_probs=31.6

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      ..+.+.|.+.+. .|++|+++++|++|..++++|.|++.+|
T Consensus       164 ~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~v~~~~g  204 (382)
T 1ryi_A          164 YFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSG  204 (382)
T ss_dssp             HHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCcEEEEEEECCEEEEEcCCc
Confidence            457777777777 7888999999999988777777777666

>2xdo_A TETX2 protein; tetracycline degradation, tigecycline, flavin, bacteroides F oxidoreductase; HET: FAD; 2.09A {Bacteroides thetaiotaomicron} PDB: 2y6q_A* 2xyo_A* 2y6r_A* 3p9u_A*

Probab=91.41  E-value=0.11  Score=49.04  Aligned_cols=31  Identities=10%  Similarity=0.020  Sum_probs=24.4

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      .+|+||    +||++|.   ++|++|+|+|+++.++++
T Consensus        27 ~dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~~~~   64 (398)
T 2xdo_A           27 KNVAIIGGGPVGLTMAKLLQQNGIDVSVYERDNDREAR   64 (398)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEECSSSTTCC
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCcccc
Confidence            345554    9999987   679999999999876554

>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*

Probab=91.28  E-value=0.093  Score=52.45  Aligned_cols=27  Identities=15%  Similarity=0.229  Sum_probs=23.6

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      +|||+||+   ++|++|+|+|+.+.+||..
T Consensus       136 ~aGl~aA~~la~~G~~V~vlEk~~~~gg~s  165 (571)
T 1y0p_A          136 GAGFSAAISATDSGAKVILIEKEPVIGGNA  165 (571)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSSSSCTTG
T ss_pred             HHHHHHHHHHHHCCCcEEEEeCCCCCCCch
Confidence            39999997   5799999999999998863

>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*

Probab=91.28  E-value=0.095  Score=47.34  Aligned_cols=32  Identities=13%  Similarity=0.256  Sum_probs=26.1

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .+|+||    |||+||.   ++|++|+|+|++  +||.+..
T Consensus        16 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~--~gg~~~~   54 (323)
T 3f8d_A           16 FDVIIVGLGPAAYGAALYSARYMLKTLVIGET--PGGQLTE   54 (323)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS--TTGGGGG
T ss_pred             cCEEEECccHHHHHHHHHHHHCCCcEEEEecc--CCCeecc
Confidence            356665    9999997   579999999998  9998654

>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*

Probab=91.18  E-value=0.49  Score=45.05  Aligned_cols=30  Identities=17%  Similarity=0.006  Sum_probs=24.6

Q ss_pred             ehhhHhHhhh---cCCC-CEEEEecCCCCCcceE
Q psy7666          82 LVIRILCTVL---RIST-PITLLESSSRLGGWVR  111 (350)
Q Consensus        82 ~viaGLaaA~---~~G~-~VtVlEa~drvGGRi~  111 (350)
                      ++++||+||+   ++|+ +|+|+|+.+..||...
T Consensus        14 gG~aGlsaA~~La~~G~~~V~vlE~~~~~~~~~~   47 (438)
T 3dje_A           14 AGTWGTSTALHLARRGYTNVTVLDPYPVPSAISA   47 (438)
T ss_dssp             CSHHHHHHHHHHHHTTCCCEEEEESSCSSCTTCT
T ss_pred             CCHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcc
Confidence            3459999998   6799 9999999998887643

>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}

Probab=91.15  E-value=0.087  Score=51.08  Aligned_cols=40  Identities=8%  Similarity=0.040  Sum_probs=32.4

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEE-eCCCc
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAV-DQPIH  346 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~-~~~G~  346 (350)
                      .+.+.+.+.+. .|++|+++++|++|+.++++ +.|+ +.+|+
T Consensus       212 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~g~  254 (463)
T 4dna_A          212 DMRRGLHAAMEEKGIRILCEDIIQSVSADADGRRVATTMKHGE  254 (463)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEECTTSCEEEEESSSCE
T ss_pred             HHHHHHHHHHHHCCCEEECCCEEEEEEEcCCCEEEEEEcCCCe
Confidence            36667777777 78999999999999987665 6788 77776

>2vou_A 2,6-dihydroxypyridine hydroxylase; oxidoreductase, aromatic hydroxylase, nicotine degradation, mono-oxygenase; HET: FAD; 2.6A {Arthrobacter nicotinovorans} SCOP: c.3.1.2 d.16.1.2

Probab=91.12  E-value=0.23  Score=46.91  Aligned_cols=48  Identities=17%  Similarity=0.276  Sum_probs=32.9

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCC-CcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRL-GGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLAD  149 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drv-GGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~  149 (350)
                      +++||++|.   ++|++|+|+|+++.. .++.      .|.       .+   .+   ...++++++|+.+
T Consensus        14 G~aGl~~A~~L~~~G~~v~v~E~~~~~~~~~~------~g~-------~l---~~---~~~~~l~~~g~~~   65 (397)
T 2vou_A           14 SISGLTAALMLRDAGVDVDVYERSPQPLSGFG------TGI-------VV---QP---ELVHYLLEQGVEL   65 (397)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSSSSCCCCS------CEE-------EC---CH---HHHHHHHHTTCCG
T ss_pred             CHHHHHHHHHHHhCCCCEEEEecCCCCCCccc------ccc-------cc---Ch---hHHHHHHHcCCcc
Confidence            349999997   689999999998763 1111      111       11   22   6789999999865

>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*

Probab=91.01  E-value=0.099  Score=47.28  Aligned_cols=33  Identities=18%  Similarity=0.218  Sum_probs=24.8

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCC----CCCcceEE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSS----RLGGWVRS  112 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~d----rvGGRi~T  112 (350)
                      +|+||    |||+||.   ++|++|+|+|+..    .+||++.+
T Consensus         6 DvvIIG~GpAGl~AA~~la~~g~~v~liE~~~~gg~~~~G~~~~   49 (314)
T 4a5l_A            6 DVVIIGSGPAAHTAAIYLGRSSLKPVMYEGFMAGGVAAGGQLTT   49 (314)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSGGGCCTTCGGGG
T ss_pred             cEEEECCCHHHHHHHHHHHHCCCCEEEEecCCCCCcccCCCcCC
Confidence            46666    9999997   6899999999865    35555543

>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}

Probab=90.92  E-value=0.094  Score=50.88  Aligned_cols=38  Identities=16%  Similarity=0.024  Sum_probs=28.7

Q ss_pred             HHHHHHHhh-c-CCCEEEeCcceeEEEEeCCeEEEEeC--CC
Q psy7666         308 IVNTLGEHL-S-NKVEVKMDTTCTNLEFLEKGVKAVDQ--PI  345 (350)
Q Consensus       308 L~~aLa~~L-~-~g~~I~l~~~V~~I~~~~~gv~V~~~--~G  345 (350)
                      +.+.+.+.+ . .|++|+++++|++|+.+++++.|+..  +|
T Consensus       217 ~~~~l~~~l~~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~~g  258 (468)
T 2qae_A          217 VTNALVGALAKNEKMKFMTSTKVVGGTNNGDSVSLEVEGKNG  258 (468)
T ss_dssp             HHHHHHHHHHHHTCCEEECSCEEEEEEECSSSEEEEEECC--
T ss_pred             HHHHHHHHHhhcCCcEEEeCCEEEEEEEcCCeEEEEEEcCCC
Confidence            556677777 6 78999999999999987766777654  55

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=90.84  E-value=0.14  Score=52.30  Aligned_cols=33  Identities=24%  Similarity=0.332  Sum_probs=28.2

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    |||+||.   ++|++|+|+|+++.+||...
T Consensus       374 ~~vvIIGgG~AGl~aA~~l~~~g~~V~lie~~~~~gg~~~  413 (671)
T 1ps9_A          374 KNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFN  413 (671)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHH
T ss_pred             CeEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCCeee
Confidence            567776    9999987   57999999999999999854

>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1

Probab=90.73  E-value=0.094  Score=50.10  Aligned_cols=25  Identities=12%  Similarity=0.357  Sum_probs=21.7

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      ++||+||.   ++|.+|+|+|+.+.+|+
T Consensus        14 ~aGl~aA~~la~~G~~V~vlEk~~~~g~   41 (401)
T 2gqf_A           14 AAGLFCAAQLAKLGKSVTVFDNGKKIGR   41 (401)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSSSSCH
T ss_pred             HHHHHHHHHHHhCCCCEEEEeCCCCCch
Confidence            49999987   57999999999998854

>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}

Probab=90.64  E-value=0.12  Score=47.04  Aligned_cols=33  Identities=21%  Similarity=0.269  Sum_probs=26.9

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .+|+||    |||+||.   +.|++|+|+|+. .+||.+..
T Consensus         9 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   48 (325)
T 2q7v_A            9 YDVVIIGGGPAGLTAAIYTGRAQLSTLILEKG-MPGGQIAW   48 (325)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTGGGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHHcCCcEEEEeCC-CCCccccc
Confidence            346655    9999987   579999999998 79998764

>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6

Probab=90.59  E-value=0.14  Score=46.31  Aligned_cols=27  Identities=19%  Similarity=0.244  Sum_probs=23.1

Q ss_pred             hhHhHhhh---cC-CCCEEEEecCCCCCcce
Q psy7666          84 IRILCTVL---RI-STPITLLESSSRLGGWV  110 (350)
Q Consensus        84 iaGLaaA~---~~-G~~VtVlEa~drvGGRi  110 (350)
                      ++||+||+   +. |.+|+|+|+.+.+||.+
T Consensus        49 ~aGl~aA~~la~~~G~~V~viEk~~~~gg~~   79 (284)
T 1rp0_A           49 SAGLSAAYEISKNPNVQVAIIEQSVSPGGGA   79 (284)
T ss_dssp             HHHHHHHHHHHTSTTSCEEEEESSSSCCTTT
T ss_pred             HHHHHHHHHHHHcCCCeEEEEECCCCCCCce
Confidence            39999987   55 99999999999998753

>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*

Probab=90.53  E-value=0.13  Score=50.96  Aligned_cols=34  Identities=18%  Similarity=0.330  Sum_probs=27.7

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .+|+||    +||++|.   ++|++|+|+|+++.+||....
T Consensus        17 ~dVvIIGaG~aGl~aA~~L~~~G~~v~iiE~~~~~GG~w~~   57 (542)
T 1w4x_A           17 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYW   57 (542)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHH
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCcccc
Confidence            345555    9999987   579999999999999997653

>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}

Probab=90.53  E-value=0.13  Score=46.71  Aligned_cols=32  Identities=13%  Similarity=0.315  Sum_probs=25.9

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      +|+||    +||+||.   ++|++|+|+|+ +.+||.+..
T Consensus        18 dvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~gg~~~~   56 (319)
T 3cty_A           18 DVVIVGAGAAGFSAAVYAARSGFSVAILDK-AVAGGLTAE   56 (319)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTGGGGG
T ss_pred             cEEEECcCHHHHHHHHHHHhCCCcEEEEeC-CCCCccccc
Confidence            45555    9999987   57999999999 678998754

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=90.45  E-value=0.12  Score=55.40  Aligned_cols=32  Identities=19%  Similarity=0.346  Sum_probs=27.6

Q ss_pred             ceeehh----hHhHhhh---cCCC-CEEEEecCCCCCcce
Q psy7666          79 LLLLVI----RILCTVL---RIST-PITLLESSSRLGGWV  110 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~-~VtVlEa~drvGGRi  110 (350)
                      ++|+||    |||+||.   ++|+ +|+|+|+.+++||..
T Consensus       188 ~~VvVIGgGpAGl~aA~~L~~~G~~~Vtv~E~~~~~GG~~  227 (1025)
T 1gte_A          188 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLS  227 (1025)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHH
T ss_pred             CEEEEECccHHHHHHHHHHHhcCCCcEEEEeCCCCCCccc
Confidence            567777    9999997   6799 799999999999974

>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*

Probab=90.13  E-value=0.44  Score=48.49  Aligned_cols=32  Identities=16%  Similarity=-0.070  Sum_probs=25.7

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      .+|+||    +||+||+   ++|++|+|+|+.+.+|+..
T Consensus       273 ~DVvIIGgGiaGlsaA~~La~~G~~V~vlEk~~~~g~ga  311 (676)
T 3ps9_A          273 REAAIIGGGIASALLSLALLRRGWQVTLYCADEAPALGA  311 (676)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSCST
T ss_pred             CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCCcccccC
Confidence            345555    9999997   6799999999998888543

>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*

Probab=90.07  E-value=0.12  Score=50.13  Aligned_cols=35  Identities=17%  Similarity=0.210  Sum_probs=27.7

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEe
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVD  342 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~  342 (350)
                      +.+.+.+.+. .|++|+++++|++|..++++ +.|+.
T Consensus       222 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~  258 (474)
T 1zmd_A          222 ISKNFQRILQKQGFKFKLNTKVTGATKKSDGKIDVSI  258 (474)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEECTTSCEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEeCceEEEEEEcCCceEEEEE
Confidence            5566666776 78999999999999987766 77763

>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1

Probab=90.05  E-value=0.11  Score=51.87  Aligned_cols=30  Identities=20%  Similarity=0.316  Sum_probs=25.0

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      +|+||    +||+||+   ++|.+|+|+|+.+.+||.
T Consensus       123 DVvVVG~G~aGl~aA~~la~~G~~V~vlEk~~~~gg~  159 (566)
T 1qo8_A          123 QVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGN  159 (566)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHTCCEEEECSSSSSCTT
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCCCCc
Confidence            35555    9999997   569999999999998875

>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*

Probab=90.02  E-value=0.1  Score=51.89  Aligned_cols=44  Identities=14%  Similarity=0.076  Sum_probs=32.7

Q ss_pred             eeehh----hHhHhhh----cCCCCEEEEecCCCCCcceEEEecCCCeEEecC
Q psy7666          80 LLLVI----RILCTVL----RISTPITLLESSSRLGGWVRSVQSPEGLIFEKG  124 (350)
Q Consensus        80 ~v~vi----aGLaaA~----~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~G  124 (350)
                      +|+||    |||++|.    ++|++|+|+|+++.+||......+ .|...|.-
T Consensus        10 dVvIIGaG~aGl~aA~~L~~~~G~~v~viE~~~~~GGtw~~~~y-pg~~~d~~   61 (540)
T 3gwf_A           10 DAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADGPGGTWYWNRY-PGALSDTE   61 (540)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSSCTHHHHCCC-TTCEEEEE
T ss_pred             CEEEECcCHHHHHHHHHHHHcCCCCEEEEECCCCCCCcccccCC-CCceecCC
Confidence            45555    9999986    469999999999999997665442 46555554

>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=89.98  E-value=0.13  Score=49.90  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=28.1

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ  343 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~  343 (350)
                      .+.+.+.+.+. .|++|+++++|++|..+++++.|+..
T Consensus       219 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~  256 (470)
T 1dxl_A          219 EIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLTVE  256 (470)
T ss_dssp             HHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEEEE
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCeEEEEEE
Confidence            35566666676 78999999999999877666666643

>2yqu_A 2-oxoglutarate dehydrogenase E3 component; lipoamide dehydrogenase, 2-oxoglutarate dehydrogenase comple pyruvate dehydrogenase complex; HET: FAD; 1.70A {Thermus thermophilus} PDB: 2eq7_A*

Probab=89.71  E-value=0.16  Score=49.10  Aligned_cols=43  Identities=7%  Similarity=0.059  Sum_probs=34.3

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      .+.+.+.+.+. .|++|+++++|++|+.+++++.|++.+|+++.
T Consensus       209 ~~~~~l~~~l~~~Gv~i~~~~~V~~i~~~~~~v~v~~~~g~~i~  252 (455)
T 2yqu_A          209 EVSRAAERVFKKQGLTIRTGVRVTAVVPEAKGARVELEGGEVLE  252 (455)
T ss_dssp             HHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTSCEEE
T ss_pred             HHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCCeEEE
Confidence            45666666666 68999999999999998888888887776653

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=89.68  E-value=0.14  Score=49.36  Aligned_cols=26  Identities=19%  Similarity=0.256  Sum_probs=22.4

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      ++||+||.   ++|.+|+|+|+.+.+|+.
T Consensus        36 ~aGl~aA~~la~~G~~V~llEk~~~~g~~   64 (447)
T 2i0z_A           36 PSGLMAAIGAAEEGANVLLLDKGNKLGRK   64 (447)
T ss_dssp             HHHHHHHHHHHHTTCCEEEECSSSSSCHH
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCce
Confidence            39999987   579999999999988754

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=89.60  E-value=0.11  Score=51.83  Aligned_cols=28  Identities=11%  Similarity=0.042  Sum_probs=23.8

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++||+||+   +.|++|+|+|+.+.+|+|+.
T Consensus       117 paGL~aA~~La~~G~kV~VlEr~~~~~~R~~  147 (549)
T 3nlc_A          117 PCGLFAGLVLAQMGFNPIIVERGKEVRERTK  147 (549)
T ss_dssp             HHHHHHHHHHHHTTCCCEEECSSCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCCeEEEEEccCccccccc
Confidence            49999997   67999999999998876653

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=89.49  E-value=0.19  Score=47.31  Aligned_cols=41  Identities=15%  Similarity=0.053  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH  346 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~  346 (350)
                      ..+.++|.+.+. .|++|+++++|++|..++++|.|++.+|.
T Consensus       153 ~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~v~t~~g~  194 (397)
T 2oln_A          153 RGTLAALFTLAQAAGATLRAGETVTELVPDADGVSVTTDRGT  194 (397)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEEETTEEEEEESSCE
T ss_pred             HHHHHHHHHHHHHcCCEEECCCEEEEEEEcCCeEEEEECCCE
Confidence            457778887776 78999999999999998888988877663

>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*

Probab=89.35  E-value=0.44  Score=48.72  Aligned_cols=28  Identities=21%  Similarity=0.115  Sum_probs=23.8

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      |+||++|+   ++|++|+|+|+.+.+|+...
T Consensus       274 iaGlsaA~~La~~G~~V~vlEk~~~~g~gaS  304 (689)
T 3pvc_A          274 IVSALTALALQRRGAVVTLYCADAQPAQGAS  304 (689)
T ss_dssp             HHHHHHHHHHHTTTCCEEEEESSSSTTCSGG
T ss_pred             HHHHHHHHHHHHCCCcEEEEeCCCccccccc
Confidence            49999998   67999999999998886543

>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*

Probab=89.26  E-value=0.18  Score=49.02  Aligned_cols=36  Identities=14%  Similarity=0.174  Sum_probs=27.6

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEE--eCCeEEEEeC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEF--LEKGVKAVDQ  343 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~--~~~gv~V~~~  343 (350)
                      +.+.+.+.+. .|++|+++++|++|..  +++.+.|+..
T Consensus       226 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~  264 (478)
T 1v59_A          226 VAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVE  264 (478)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEE
Confidence            5566667776 7899999999999988  5556666654

>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}

Probab=89.25  E-value=0.27  Score=48.33  Aligned_cols=51  Identities=12%  Similarity=0.051  Sum_probs=34.1

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      +++||++|.   ++|++|+|+|+.+.++...      .+       ..+   .+   ..+++++++|+.+++.
T Consensus        20 GpaGl~~A~~La~~G~~v~vlE~~~~~~~~~------r~-------~~l---~~---~~~~~l~~lGl~~~~~   73 (500)
T 2qa1_A           20 GPAGMMLAGELRLAGVEVVVLERLVERTGES------RG-------LGF---TA---RTMEVFDQRGILPRFG   73 (500)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEESCCC-CCCC------CS-------EEE---CH---HHHHHHHTTTCGGGGC
T ss_pred             CHHHHHHHHHHHHCCCCEEEEeCCCCCCCCC------Cc-------ceE---CH---HHHHHHHHCCCHHHHH
Confidence            349999997   6899999999987754211      11       112   12   5678889999866543

>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*

Probab=89.25  E-value=0.37  Score=44.55  Aligned_cols=31  Identities=16%  Similarity=0.036  Sum_probs=24.9

Q ss_pred             ehhhHhHhhh--cCCCCEEEEecCCCCCcceEE
Q psy7666          82 LVIRILCTVL--RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        82 ~viaGLaaA~--~~G~~VtVlEa~drvGGRi~T  112 (350)
                      ++|+||++|+  .+|++|+|+|+.+++|+....
T Consensus        17 aGi~Gls~A~~La~G~~V~vlE~~~~~g~~as~   49 (381)
T 3nyc_A           17 AGIAGASTGYWLSAHGRVVVLEREAQPGYHSTG   49 (381)
T ss_dssp             CSHHHHHHHHHHTTTSCEEEECSSSSTTSSGGG
T ss_pred             CcHHHHHHHHHHhCCCCEEEEECCCCccccccc
Confidence            3459999998  469999999999999866443

>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*

Probab=89.24  E-value=0.15  Score=46.29  Aligned_cols=30  Identities=27%  Similarity=0.203  Sum_probs=23.8

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      .|+||    |||+||.   ++|++|+|+|+. ..||.+
T Consensus         8 DVvIIGaGpAGlsAA~~lar~g~~v~lie~~-~~gg~~   44 (304)
T 4fk1_A            8 DCAVIGAGPAGLNASLVLGRARKQIALFDNN-TNRNRV   44 (304)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEECS-CCGGGG
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCCEEEEeCC-CCCCee
Confidence            36666    9999996   689999999985 567754

>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*

Probab=89.10  E-value=0.19  Score=50.07  Aligned_cols=45  Identities=16%  Similarity=0.152  Sum_probs=32.7

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecC
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKG  124 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~G  124 (350)
                      .+|+||    |||++|.   +.|++|+|+|+++.+||....-.+ -|..+|..
T Consensus        10 ~dVvIIGaG~aGl~aA~~L~~~g~~v~iiE~~~~~GGtw~~~~y-Pg~~~d~~   61 (545)
T 3uox_A           10 LDAVVIGAGVTGIYQAFLINQAGMKVLGIEAGEDVGGTWYWNRY-PGCRLDTE   61 (545)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCCC-TTCBCSSC
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEeCCCCCCCccccCCC-CceeecCc
Confidence            345555    9999987   579999999999999998754342 44444443

>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*

Probab=89.08  E-value=0.17  Score=53.90  Aligned_cols=33  Identities=24%  Similarity=0.312  Sum_probs=28.6

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      .+|+||    |||+||.   +.|++|+|+|+.+++||++.
T Consensus       129 ~dVvVIGaGpAGl~AA~~la~~G~~V~lie~~~~~GG~~~  168 (965)
T 2gag_A          129 TDVLVVGAGPAGLAAAREASRSGARVMLLDERAEAGGTLL  168 (965)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSSGGGG
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCCCceec
Confidence            346666    9999987   57999999999999999987

>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}

Probab=88.97  E-value=0.17  Score=46.74  Aligned_cols=41  Identities=12%  Similarity=0.210  Sum_probs=32.0

Q ss_pred             HHHHHHHhhc-CC-CEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666         308 IVNTLGEHLS-NK-VEVKMDTTCTNLEFLEKGVKAVDQPIHQM  348 (350)
Q Consensus       308 L~~aLa~~L~-~g-~~I~l~~~V~~I~~~~~gv~V~~~~G~~~  348 (350)
                      +.+.+.+.+. .| ++|+++++|.+|..+++++.|+..+|+.+
T Consensus       216 ~~~~l~~~l~~~g~v~~~~~~~v~~i~~~~~~~~v~~~~g~~~  258 (369)
T 3d1c_A          216 TRQRLGNVIKQGARIEMNVHYTVKDIDFNNGQYHISFDSGQSV  258 (369)
T ss_dssp             HHHHHHHHHHTTCCEEEECSCCEEEEEEETTEEEEEESSSCCE
T ss_pred             HHHHHHHHHhhCCcEEEecCcEEEEEEecCCceEEEecCCeEe
Confidence            4456666666 65 89999999999988777888888888654

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=88.90  E-value=0.22  Score=46.16  Aligned_cols=41  Identities=10%  Similarity=0.042  Sum_probs=35.0

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH  346 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~  346 (350)
                      ..+.++|.+.+. .|++|+++++|++|..++++|.|++.+|.
T Consensus       149 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~v~~~~g~  190 (372)
T 2uzz_A          149 ELAIKTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGE  190 (372)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSSEEEEESSCE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCEEEEEEEcCCEEEEEECCCe
Confidence            467888888887 78999999999999998888888888775

>1ojt_A Surface protein; redox-active center, glycolysis, oxidoreductase, NAD, flavop FAD, P64K; HET: FAD; 2.75A {Neisseria meningitidis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1bhy_A*

Probab=88.84  E-value=0.18  Score=49.20  Aligned_cols=37  Identities=16%  Similarity=0.132  Sum_probs=29.6

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQP  344 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~  344 (350)
                      +.+.+.+.|. .|++|+++++|++|+.+++++.|+..+
T Consensus       228 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~  265 (482)
T 1ojt_A          228 LVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEG  265 (482)
T ss_dssp             HHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEES
T ss_pred             HHHHHHHHHHhcCCEEEECCEEEEEEEcCCeEEEEEec
Confidence            5556666676 689999999999999887777777665

>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*

Probab=88.79  E-value=0.16  Score=47.25  Aligned_cols=32  Identities=19%  Similarity=0.255  Sum_probs=25.6

Q ss_pred             eeehh----hHhHhhh---cC--CCCEEEEecCCCCCcceE
Q psy7666          80 LLLVI----RILCTVL---RI--STPITLLESSSRLGGWVR  111 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~--G~~VtVlEa~drvGGRi~  111 (350)
                      +|+||    +||+||+   +.  |++|+|+|+.+.+||-..
T Consensus        67 dv~IiG~G~aGl~aA~~la~~~~g~~V~v~e~~~~~ggg~~  107 (326)
T 2gjc_A           67 DVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSW  107 (326)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTT
T ss_pred             CEEEECccHHHHHHHHHHHhcCCCCeEEEEecCcccccccc
Confidence            45555    9999987   44  999999999999987543

>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A* 2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*

Probab=88.78  E-value=0.18  Score=49.80  Aligned_cols=29  Identities=21%  Similarity=0.394  Sum_probs=22.5

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLE  335 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~  335 (350)
                      .+.+.+.+.|. .|++|++++.|++|...+
T Consensus       251 ~~~~~~~~~l~~~GV~v~~~~~v~~v~~~~  280 (519)
T 3qfa_A          251 DMANKIGEHMEEHGIKFIRQFVPIKVEQIE  280 (519)
T ss_dssp             HHHHHHHHHHHHTTCEEEESEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEeCCeEEEEEEcc
Confidence            35666667776 789999999999987643

>1lvl_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD NAD; 2.45A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=88.44  E-value=0.14  Score=49.55  Aligned_cols=31  Identities=29%  Similarity=0.472  Sum_probs=25.7

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      +|+||    |||+||.   +.|++|+|+|+ +.+||.+.
T Consensus         7 dvvIIG~G~aGl~aA~~l~~~g~~V~lie~-~~~GG~~~   44 (458)
T 1lvl_A            7 TLLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTCL   44 (458)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCEEEEEcc-CCCCCcCC
Confidence            45555    9999987   46999999999 89999865

>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.30A {Chromobacterium violaceum atcc 12472}

Probab=88.36  E-value=0.2  Score=47.00  Aligned_cols=25  Identities=12%  Similarity=-0.057  Sum_probs=20.8

Q ss_pred             ehhhHhHhhh---cC--CCCEEEEecCCCC
Q psy7666          82 LVIRILCTVL---RI--STPITLLESSSRL  106 (350)
Q Consensus        82 ~viaGLaaA~---~~--G~~VtVlEa~drv  106 (350)
                      ++++||++|.   ++  |++|+|+|+++.+
T Consensus         8 aG~aGl~~A~~L~~~~~G~~V~v~E~~~~~   37 (381)
T 3c4a_A            8 AGPAGLVFASQLKQARPLWAIDIVEKNDEQ   37 (381)
T ss_dssp             CSHHHHHHHHHHHHHCTTSEEEEECSSCTT
T ss_pred             CCHHHHHHHHHHHhcCCCCCEEEEECCCCC
Confidence            3459999987   45  9999999998876

>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*

Probab=88.35  E-value=0.19  Score=45.84  Aligned_cols=33  Identities=18%  Similarity=0.243  Sum_probs=26.5

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEec----CCCCCcceEE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLES----SSRLGGWVRS  112 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa----~drvGGRi~T  112 (350)
                      +|+||    +||++|.   ++|++|+|+|+    ...+||++..
T Consensus        10 ~vvIIG~G~aGl~~A~~l~~~g~~v~lie~~~~~~~~~gg~~~~   53 (333)
T 1vdc_A           10 RLCIVGSGPAAHTAAIYAARAELKPLLFEGWMANDIAPGGQLTT   53 (333)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBTTBCTTCGGGG
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCccccCCCceeee
Confidence            45555    9999987   57999999999    6788987654

>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}

Probab=88.33  E-value=0.35  Score=47.47  Aligned_cols=50  Identities=14%  Similarity=0.060  Sum_probs=34.5

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      ++||++|.   ++|++|+|+|+.+.++...      .+       ..+   .+   ..+++++++|+.+++.
T Consensus        22 paGl~~A~~La~~G~~v~vlE~~~~~~~~~------r~-------~~l---~~---~~~~~l~~lGl~~~~~   74 (499)
T 2qa2_A           22 PAGLMLAGELRLGGVDVMVLEQLPQRTGES------RG-------LGF---TA---RTMEVFDQRGILPAFG   74 (499)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESCSSCCCCC------CS-------EEE---CH---HHHHHHHHTTCGGGGC
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCCCCC------ce-------eEE---CH---HHHHHHHHCCCHHHHH
Confidence            49999997   6899999999987653210      11       112   22   5678899999876543

>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*

Probab=88.23  E-value=0.19  Score=48.84  Aligned_cols=39  Identities=13%  Similarity=0.120  Sum_probs=30.8

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      .+.+.+.+.+. .|++|+++++|++|+.+++++.|+..++
T Consensus       222 ~~~~~l~~~l~~~Gv~v~~~~~v~~i~~~~~~~~v~~~~~  261 (476)
T 3lad_A          222 QVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDA  261 (476)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESS
T ss_pred             HHHHHHHHHHHhCCCEEEECCEEEEEEEcCCEEEEEEEeC
Confidence            36666677776 7899999999999998887777766654

>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*

Probab=87.85  E-value=0.23  Score=44.90  Aligned_cols=31  Identities=10%  Similarity=0.199  Sum_probs=24.6

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG  337 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g  337 (350)
                      .+.+.+.+.+. .|++|+++++|++|..++++
T Consensus       185 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~  216 (320)
T 1trb_A          185 ILIKRLMDKVENGNIILHTNRTLEEVTGDQMG  216 (320)
T ss_dssp             HHHHHHHHHHHTSSEEEECSCEEEEEEECSSS
T ss_pred             HHHHHHHHhcccCCeEEEcCceeEEEEcCCCc
Confidence            45666777776 78999999999999987644

>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*

Probab=87.81  E-value=0.27  Score=44.35  Aligned_cols=28  Identities=25%  Similarity=0.198  Sum_probs=23.2

Q ss_pred             hhHhHhhh---cCCC-CEEEEecCCCCCcceEE
Q psy7666          84 IRILCTVL---RIST-PITLLESSSRLGGWVRS  112 (350)
Q Consensus        84 iaGLaaA~---~~G~-~VtVlEa~drvGGRi~T  112 (350)
                      .+||+||.   ++|+ +|+|+|+ +.+||.+..
T Consensus        11 ~aGl~aA~~l~~~g~~~v~lie~-~~~gg~~~~   42 (311)
T 2q0l_A           11 PAGLSAGLYATRGGVKNAVLFEK-GMPGGQITG   42 (311)
T ss_dssp             HHHHHHHHHHHHTTCSSEEEECS-SSTTCGGGG
T ss_pred             HHHHHHHHHHHHCCCCcEEEEcC-CCCCccccc
Confidence            39999987   5799 9999999 578987653

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=87.81  E-value=0.27  Score=45.76  Aligned_cols=40  Identities=13%  Similarity=0.111  Sum_probs=34.3

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      ..+.++|.+.+. .|++|+++++|++|+.++++|.|++.+|
T Consensus       150 ~~~~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~g  190 (389)
T 2gf3_A          150 ENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANG  190 (389)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCcEEEEEEecCCeEEEEeCCC
Confidence            568888888887 7899999999999999887888887766

>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...

Probab=87.74  E-value=0.22  Score=48.41  Aligned_cols=37  Identities=24%  Similarity=0.179  Sum_probs=28.6

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCe--EEEEeCC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG--VKAVDQP  344 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g--v~V~~~~  344 (350)
                      +.+.+.+.|. .|++|+++++|++|+.++++  +.|++.+
T Consensus       230 ~~~~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~  269 (478)
T 3dk9_A          230 ISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAV  269 (478)
T ss_dssp             HHHHHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECC
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEcc
Confidence            5556666666 78999999999999987655  6677665

>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*

Probab=87.61  E-value=0.27  Score=46.07  Aligned_cols=48  Identities=8%  Similarity=0.123  Sum_probs=36.4

Q ss_pred             EEEecCcH---HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCC
Q psy7666         298 VWSVEGGL---QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPI  345 (350)
Q Consensus       298 ~~~~~GG~---~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G  345 (350)
                      .+.+.+|.   ..+.+.|.+.+. .|++|+++++|++|..++++ +.|++.+|
T Consensus       163 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~i~~~~~v~~i~~~~~~~~~v~~~~g  215 (405)
T 2gag_B          163 TWQPRAGIAKHDHVAWAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRG  215 (405)
T ss_dssp             EEETTCBBCCHHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTC
T ss_pred             EEeCCCccCCHHHHHHHHHHHHHHCCCEEEcCCeEEEEEEeCCEEEEEEeCCc
Confidence            44444443   368888888887 78999999999999987665 56777777

>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*

Probab=87.32  E-value=0.28  Score=49.01  Aligned_cols=31  Identities=23%  Similarity=0.298  Sum_probs=25.7

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      +|+||    +||+||+   ++|++|+|+|+.+.+||..
T Consensus       128 ~v~viG~G~aG~~aa~~~~~~g~~v~~~e~~~~~~~~~  165 (572)
T 1d4d_A          128 DVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNT  165 (572)
T ss_dssp             SEEEECCSHHHHHHHHHHHSSSCCEEEECSSSSSCTTG
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCcch
Confidence            45555    9999987   5799999999999998764

>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}

Probab=87.20  E-value=0.24  Score=48.19  Aligned_cols=41  Identities=17%  Similarity=0.096  Sum_probs=30.9

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCe--EEEEeCCC-cee
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG--VKAVDQPI-HQM  348 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g--v~V~~~~G-~~~  348 (350)
                      +.+.+.+.+. .|++|+++++|++|+.++++  +.|++.+| +++
T Consensus       228 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~~G~~~i  272 (479)
T 2hqm_A          228 IQNTITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMNDSKSID  272 (479)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEETTSCEEE
T ss_pred             HHHHHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEECCCcEEE
Confidence            5555666666 68999999999999886555  78888888 544

>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}

Probab=87.16  E-value=0.74  Score=42.16  Aligned_cols=30  Identities=13%  Similarity=0.039  Sum_probs=24.6

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      +++||++|+   ++|++|+|+|+.+.+|+....
T Consensus        13 G~~Gl~~A~~La~~G~~V~vlE~~~~~~~~~s~   45 (369)
T 3dme_A           13 GVVGLAIARALAAGGHEVLVAEAAEGIGTGTSS   45 (369)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECSSSSSSCSTTS
T ss_pred             CHHHHHHHHHHHhCCCeEEEEeCCCCCCCccCc
Confidence            349999998   679999999999888876443

>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}

Probab=87.14  E-value=0.34  Score=45.77  Aligned_cols=22  Identities=5%  Similarity=-0.049  Sum_probs=19.1

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSS  104 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~d  104 (350)
                      +++||++|+   ++|++|+|+|+.+
T Consensus        14 G~aGl~~A~~La~~G~~V~v~E~~~   38 (421)
T 3nix_A           14 GPAGTVAASLVNKSGFKVKIVEKQK   38 (421)
T ss_dssp             SHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CHHHHHHHHHHHhCCCCEEEEeCCC
Confidence            349999997   6799999999987

>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*

Probab=87.12  E-value=0.3  Score=47.96  Aligned_cols=31  Identities=16%  Similarity=0.193  Sum_probs=25.3

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      .+|+||    +||++|.   +.|.+|+|+|+++.+|+.
T Consensus        93 ~dVvIVGgG~aGl~aA~~La~~G~~V~liEk~~~~g~~  130 (497)
T 2bry_A           93 TKCLVVGAGPCGLRAAVELALLGARVVLVEKRIKFSRH  130 (497)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESCSSCCCC
T ss_pred             CCEEEECccHHHHHHHHHHHHCCCeEEEEEeccccCCC
Confidence            456655    9999987   579999999999998754

>3alj_A 2-methyl-3-hydroxypyridine-5-carboxylic acid OXYG; alpha/beta fold, oxidoreductase; HET: FAD; 1.48A {Mesorhizobium loti} PDB: 3alh_A* 3ali_A* 3gmb_A* 3gmc_A* 3alk_A* 3alm_A* 3all_A*

Probab=86.97  E-value=0.3  Score=45.68  Aligned_cols=25  Identities=24%  Similarity=0.199  Sum_probs=21.4

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      ++||++|.   ++|++|+|+|+++.+++
T Consensus        21 ~aGl~~A~~L~~~G~~v~viE~~~~~~~   48 (379)
T 3alj_A           21 FAGLTAAIALKQNGWDVRLHEKSSELRA   48 (379)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSSSCCC
T ss_pred             HHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence            49999987   67999999999988764

>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD; 1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1geu_A* 1ger_A* 1get_A*

Probab=86.96  E-value=0.27  Score=47.47  Aligned_cols=41  Identities=12%  Similarity=0.031  Sum_probs=32.0

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCcee
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQM  348 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~  348 (350)
                      +.+.+.+.+. .|++|+++++|++|+.++++ +.|++.+|+++
T Consensus       210 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i  252 (450)
T 1ges_A          210 ISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSE  252 (450)
T ss_dssp             HHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCcEEEEEECCCcEE
Confidence            5556666666 68999999999999987654 78888888754

>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}

Probab=86.90  E-value=0.31  Score=43.30  Aligned_cols=47  Identities=13%  Similarity=-0.006  Sum_probs=29.3

Q ss_pred             EEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCcee
Q psy7666         298 VWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQM  348 (350)
Q Consensus       298 ~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~  348 (350)
                      ...+..+...+.+.+.+.+. .|++|+. ++|++|..++   .|+..+|+++
T Consensus       166 v~~v~~~~~~~~~~~~~~l~~~gv~i~~-~~v~~i~~~~---~v~~~~g~~~  213 (297)
T 3fbs_A          166 TTFFTNGIVEPDADQHALLAARGVRVET-TRIREIAGHA---DVVLADGRSI  213 (297)
T ss_dssp             EEEECTTTCCCCHHHHHHHHHTTCEEEC-SCEEEEETTE---EEEETTSCEE
T ss_pred             EEEEECCCCCCCHHHHHHHHHCCcEEEc-ceeeeeecCC---eEEeCCCCEE
Confidence            33344333344555666666 7899985 8999886432   6666777654

>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}

Probab=86.87  E-value=0.29  Score=47.85  Aligned_cols=38  Identities=5%  Similarity=-0.057  Sum_probs=29.6

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC--CC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ--PI  345 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~--~G  345 (350)
                      .+.+.+.+.|. . ++|+++++|++|+.+++++.|+..  +|
T Consensus       216 ~~~~~l~~~l~~~-V~i~~~~~v~~i~~~~~~v~v~~~~~~G  256 (492)
T 3ic9_A          216 EMKRYAEKTFNEE-FYFDAKARVISTIEKEDAVEVIYFDKSG  256 (492)
T ss_dssp             HHHHHHHHHHHTT-SEEETTCEEEEEEECSSSEEEEEECTTC
T ss_pred             HHHHHHHHHHhhC-cEEEECCEEEEEEEcCCEEEEEEEeCCC
Confidence            35666666666 4 899999999999998888877764  66

>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*

Probab=86.79  E-value=0.34  Score=47.26  Aligned_cols=38  Identities=8%  Similarity=0.129  Sum_probs=27.8

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEEeCC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAVDQP  344 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~~~~  344 (350)
                      .+.+.+.+.+. .|++|++++.|++|...++ .+.|+..+
T Consensus       226 ~~~~~l~~~l~~~gv~~~~~~~v~~i~~~~~~~~~v~~~~  265 (488)
T 3dgz_A          226 QMSSLVTEHMESHGTQFLKGCVPSHIKKLPTNQLQVTWED  265 (488)
T ss_dssp             HHHHHHHHHHHHTTCEEEETEEEEEEEECTTSCEEEEEEE
T ss_pred             HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEe
Confidence            35666677776 7899999999999988544 46665543

>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity, oxidoreductase; HET: FAD; 2.10A {Marichromatium gracile} PDB: 2rab_A*

Probab=86.52  E-value=0.28  Score=47.53  Aligned_cols=41  Identities=22%  Similarity=0.255  Sum_probs=33.5

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc-ee
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH-QM  348 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~-~~  348 (350)
                      +.+.+.+.+. .|++|+++++|++|..+++++.|++.+|+ ++
T Consensus       209 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~G~~~i  251 (463)
T 2r9z_A          209 LSATLAENMHAQGIETHLEFAVAALERDAQGTTLVAQDGTRLE  251 (463)
T ss_dssp             HHHHHHHHHHHTTCEEESSCCEEEEEEETTEEEEEETTCCEEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEeCCcEEE
Confidence            5556666676 78999999999999988778888888887 44

>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=86.52  E-value=0.27  Score=48.17  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=25.8

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      +|+||    +||+||.   +. ++|+|+|+.+++||.+.
T Consensus       110 dVvIIGgG~aGl~aA~~L~~~-~~V~vie~~~~~GG~~~  147 (493)
T 1y56_A          110 DVAIIGGGPAGIGAALELQQY-LTVALIEERGWLGGDMW  147 (493)
T ss_dssp             SCCEECCSHHHHHHHHHHTTT-CCEEEECTTSSSSCSGG
T ss_pred             CEEEECccHHHHHHHHHHHhc-CCEEEEeCCCCCCCeee
Confidence            45555    9999987   46 99999999999999865

>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*

Probab=86.50  E-value=0.2  Score=49.04  Aligned_cols=43  Identities=12%  Similarity=0.177  Sum_probs=33.4

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEEeCCCceec
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAVDQPIHQMT  349 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~~~~G~~~~  349 (350)
                      .+.+.+.+.+. .|++|+++++|++|..+++ .+.|++.+|+++.
T Consensus       236 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i~  280 (495)
T 2wpf_A          236 TIREEVTKQLTANGIEIMTNENPAKVSLNTDGSKHVTFESGKTLD  280 (495)
T ss_dssp             HHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEE
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCceEEEEECCCcEEE
Confidence            35666777776 7899999999999998764 4788888887543

>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*

Probab=86.42  E-value=0.24  Score=48.46  Aligned_cols=42  Identities=14%  Similarity=0.117  Sum_probs=33.3

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEEeCCCcee
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAVDQPIHQM  348 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~~~~G~~~  348 (350)
                      .+.+.+.+.+. .|++|+++++|++|+.+++ .+.|++.+|+++
T Consensus       232 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~v~~~~G~~i  275 (490)
T 1fec_A          232 ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEA  275 (490)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEE
T ss_pred             HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCEEEEEECCCcEE
Confidence            35666777776 7899999999999998765 478888888654

>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase, oxidoreductase; HET: FAD; 1.60A {Pseudomonas aeruginosa} PDB: 1zx9_A*

Probab=86.37  E-value=0.31  Score=47.19  Aligned_cols=38  Identities=11%  Similarity=0.154  Sum_probs=30.6

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQP  344 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~  344 (350)
                      .+.+.+.+.+. .|++|+++++|++|..+++.+.|++.+
T Consensus       217 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~v~~~~  255 (467)
T 1zk7_A          217 AIGEAVTAAFRAEGIEVLEHTQASQVAHMDGEFVLTTTH  255 (467)
T ss_dssp             HHHHHHHHHHHHTTCEEETTCCEEEEEEETTEEEEEETT
T ss_pred             HHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEECC
Confidence            46677777777 789999999999999887777777653

>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}

Probab=86.32  E-value=0.38  Score=44.06  Aligned_cols=33  Identities=21%  Similarity=0.268  Sum_probs=25.7

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .+|+||    +||+||.   +.|++|+|+|+. .+||.+..
T Consensus        15 ~~vvIIG~G~aGl~aA~~l~~~g~~v~lie~~-~~gg~~~~   54 (335)
T 2a87_A           15 RDVIVIGSGPAGYTAALYAARAQLAPLVFEGT-SFGGALMT   54 (335)
T ss_dssp             EEEEEECCHHHHHHHHHHHHHTTCCCEEECCS-SCSCGGGS
T ss_pred             CCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCceec
Confidence            456665    9999987   579999999964 78887643

>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}

Probab=86.29  E-value=0.28  Score=45.90  Aligned_cols=29  Identities=21%  Similarity=0.162  Sum_probs=23.8

Q ss_pred             hhhHhHhhh---cC--CCCEEEEecCCCCCcceE
Q psy7666          83 VIRILCTVL---RI--STPITLLESSSRLGGWVR  111 (350)
Q Consensus        83 viaGLaaA~---~~--G~~VtVlEa~drvGGRi~  111 (350)
                      .++||+||+   ++  |++|+|+|+.+.+||.+.
T Consensus        88 G~AGL~aA~~La~~~~G~~V~LiEk~~~~GGg~~  121 (344)
T 3jsk_A           88 GSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAW  121 (344)
T ss_dssp             SHHHHHHHHHHHHHCTTSCEEEEESSSSCCTTTT
T ss_pred             cHHHHHHHHHHHhcCCCCEEEEEeCCCccCCccc
Confidence            349999987   33  999999999999987644

>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*

Probab=86.19  E-value=1.3  Score=41.44  Aligned_cols=26  Identities=15%  Similarity=-0.019  Sum_probs=21.4

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      ++++||++|+   ++|++|+|+|+.+..+
T Consensus        12 aG~~Gl~~A~~La~~G~~V~vlE~~~~~~   40 (397)
T 2oln_A           12 GGPVGLATAWQVAERGHRVLVLERHTFFN   40 (397)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEEESSCTTC
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEeCCCCCC
Confidence            3459999998   6799999999987654

>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*

Probab=86.04  E-value=0.28  Score=49.20  Aligned_cols=27  Identities=15%  Similarity=0.238  Sum_probs=22.9

Q ss_pred             hhhHhHhhh---cC------CCCEEEEecCCCCCcc
Q psy7666          83 VIRILCTVL---RI------STPITLLESSSRLGGW  109 (350)
Q Consensus        83 viaGLaaA~---~~------G~~VtVlEa~drvGGR  109 (350)
                      ++|||+||.   ++      |.+|+|+|+.+.+|+.
T Consensus        44 G~aGlaaA~~La~~~~~~~~G~~V~vlEk~~~~g~~   79 (584)
T 2gmh_A           44 GPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAH   79 (584)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTT
T ss_pred             CHHHHHHHHHHHhcccccCCCCcEEEEeCCCCCCCc
Confidence            349999997   45      9999999999888875

>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}

Probab=86.03  E-value=1.1  Score=42.81  Aligned_cols=47  Identities=13%  Similarity=0.229  Sum_probs=40.5

Q ss_pred             EEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         299 WSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       299 ~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      ..+......+.+.|.+.+. .|++|+++++|++|..+++++.|++.+|
T Consensus       125 ~~~~~~~~~l~~~L~~~l~~~Gv~i~~~~~V~~i~~~~~~~~V~~~~g  172 (417)
T 3v76_A          125 LFCDHSAKDIIRMLMAEMKEAGVQLRLETSIGEVERTASGFRVTTSAG  172 (417)
T ss_dssp             EEESSCHHHHHHHHHHHHHHHTCEEECSCCEEEEEEETTEEEEEETTE
T ss_pred             EeeCCCHHHHHHHHHHHHHHCCCEEEECCEEEEEEEeCCEEEEEECCc
Confidence            3356667789999998887 7899999999999999988999998887

>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide oxidoreductase class I, rhodan coenzyme A, flavin adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus anthracis} PDB: 3icr_A* 3ict_A*

Probab=85.88  E-value=0.32  Score=48.62  Aligned_cols=41  Identities=15%  Similarity=0.111  Sum_probs=29.9

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      .+.+.+.+.+. .|++|+++++|++|..++++  |+..+|+++.
T Consensus       229 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~--v~~~~g~~i~  270 (588)
T 3ics_A          229 EMAAYVHEHMKNHDVELVFEDGVDALEENGAV--VRLKSGSVIQ  270 (588)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEGGGTE--EEETTSCEEE
T ss_pred             HHHHHHHHHHHHcCCEEEECCeEEEEecCCCE--EEECCCCEEE
Confidence            35666777777 78999999999999876554  4556666543

>3c96_A Flavin-containing monooxygenase; FAD, oxidoreductase, PF01266, NESG, PAR240, structural genomics, PSI-2; HET: FAD; 1.90A {Pseudomonas aeruginosa PAO1} SCOP: c.3.1.2 d.16.1.2 PDB: 2rgj_A*

Probab=85.66  E-value=0.44  Score=45.04  Aligned_cols=25  Identities=40%  Similarity=0.372  Sum_probs=21.2

Q ss_pred             hhhHhHhhh---cCCCC-EEEEecCCCCC
Q psy7666          83 VIRILCTVL---RISTP-ITLLESSSRLG  107 (350)
Q Consensus        83 viaGLaaA~---~~G~~-VtVlEa~drvG  107 (350)
                      +++||++|.   ++|.+ |+|+|+++.++
T Consensus        13 G~aGl~~A~~L~~~G~~~v~v~E~~~~~~   41 (410)
T 3c96_A           13 GIGGLSCALALHQAGIGKVTLLESSSEIR   41 (410)
T ss_dssp             SHHHHHHHHHHHHTTCSEEEEEESSSSCC
T ss_pred             CHHHHHHHHHHHhCCCCeEEEEECCCCcc
Confidence            349999997   67999 99999988765

>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*

Probab=85.66  E-value=0.2  Score=48.09  Aligned_cols=42  Identities=19%  Similarity=0.120  Sum_probs=33.8

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEE---------------eCCeE-EEEeCCCc
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEF---------------LEKGV-KAVDQPIH  346 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~---------------~~~gv-~V~~~~G~  346 (350)
                      ...+.++|++.+. .|++|+++++|++|..               +++++ .|.+.+|.
T Consensus       180 ~~~l~~~L~~~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g~  238 (448)
T 3axb_A          180 AEKVVDYYYRRASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDGT  238 (448)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTSC
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCCE
Confidence            3468888888887 8999999999999998               55554 67777773

>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=85.53  E-value=0.34  Score=46.73  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=28.4

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ  343 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~  343 (350)
                      +.+.+.+.+. .|++|+++++|++|+.+++++.|+..
T Consensus       213 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~  249 (455)
T 1ebd_A          213 MAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYE  249 (455)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCeEEEEEE
Confidence            5566666666 78999999999999988777776653

>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}

Probab=85.31  E-value=0.4  Score=48.22  Aligned_cols=28  Identities=18%  Similarity=0.159  Sum_probs=22.1

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCC
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      +|+||    +||++|+   ++|++|+|+|+.+..+
T Consensus        25 DVvIVGgG~AGl~aA~~Lar~G~~V~LiEr~~~~~   59 (591)
T 3i3l_A           25 KVAIIGGGPAGSVAGLTLHKLGHDVTIYERSAFPR   59 (591)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCEEEEECSSCSSC
T ss_pred             CEEEECcCHHHHHHHHHHHcCCCCEEEEcCCCCCC
Confidence            45554    9999987   6799999999986543

>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*

Probab=85.04  E-value=0.36  Score=46.66  Aligned_cols=38  Identities=8%  Similarity=-0.000  Sum_probs=28.6

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC-CC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ-PI  345 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~-~G  345 (350)
                      +.+.+.+.+. .|++|+++++|++|+.+++++.|+.. +|
T Consensus       214 ~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~v~~~~~g  253 (464)
T 2a8x_A          214 VSKEIEKQFKKLGVTILTATKVESIADGGSQVTVTVTKDG  253 (464)
T ss_dssp             HHHHHHHHHHHHTCEEECSCEEEEEEECSSCEEEEEESSS
T ss_pred             HHHHHHHHHHHcCCEEEeCcEEEEEEEcCCeEEEEEEcCC
Confidence            4455566665 68999999999999987766777654 55

>3klj_A NAD(FAD)-dependent dehydrogenase, NIRB-family (N- domain); FAD-binding protein, GR-fold, oxidoreductase; HET: FAD; 2.10A {Clostridium acetobutylicum}

Probab=84.82  E-value=0.5  Score=44.67  Aligned_cols=33  Identities=15%  Similarity=0.109  Sum_probs=25.3

Q ss_pred             CCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          76 PDLLLLLVI----RILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        76 ~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      ++.++|+||    |||+||.   ..+.+|+|+|+.+.++.
T Consensus         7 ~~~~~~vIvGgG~AGl~aA~~L~~~~~~itlie~~~~~~y   46 (385)
T 3klj_A            7 HKSTKILILGAGPAGFSAAKAALGKCDDITMINSEKYLPY   46 (385)
T ss_dssp             -CBCSEEEECCSHHHHHHHHHHTTTCSCEEEECSSSSCCB
T ss_pred             cCCCCEEEEcCcHHHHHHHHHHhCCCCEEEEEECCCCCCc
Confidence            334566665    9999987   46899999999998774

>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1

Probab=84.54  E-value=0.28  Score=47.98  Aligned_cols=42  Identities=12%  Similarity=0.071  Sum_probs=33.9

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +.+.+.+.+. .|++|+++++|++|..+++++.|+..+|++++
T Consensus       225 ~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~~v~v~~~~g~~i~  267 (499)
T 1xdi_A          225 AALVLEESFAERGVRLFKNARAASVTRTGAGVLVTMTDGRTVE  267 (499)
T ss_dssp             HHHHHHHHHHHTTCEEETTCCEEEEEECSSSEEEEETTSCEEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEEEEECCCcEEE
Confidence            5566666676 78999999999999987777888888887653

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=84.50  E-value=0.48  Score=44.04  Aligned_cols=41  Identities=5%  Similarity=-0.074  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEE-EEeCCC
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVK-AVDQPI  345 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~-V~~~~G  345 (350)
                      ...+.++|.+.+. .|++|+++++|++|..++++|. |++.+|
T Consensus       148 ~~~l~~~l~~~~~~~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g  190 (382)
T 1y56_B          148 PFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKG  190 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEETTE
T ss_pred             HHHHHHHHHHHHHHCCCEEECCceEEEEEEECCEEEEEEECCc
Confidence            3567888888887 7899999999999999888877 887776

>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}

Probab=84.26  E-value=0.37  Score=46.41  Aligned_cols=39  Identities=15%  Similarity=0.204  Sum_probs=31.9

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      .+.+.+.+.+. .|++|+++++|++|...++++.|++.+|
T Consensus       190 ~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g  229 (452)
T 3oc4_A          190 EMVAEVQKSLEKQAVIFHFEETVLGIEETANGIVLETSEQ  229 (452)
T ss_dssp             HHHHHHHHHHHTTTEEEEETCCEEEEEECSSCEEEEESSC
T ss_pred             HHHHHHHHHHHHcCCEEEeCCEEEEEEccCCeEEEEECCC
Confidence            36667777777 7899999999999998777788877766

>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1

Probab=84.16  E-value=2.4  Score=40.60  Aligned_cols=47  Identities=17%  Similarity=0.223  Sum_probs=39.1

Q ss_pred             CcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666         303 GGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT  349 (350)
Q Consensus       303 GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~  349 (350)
                      +....+.++|.+.+. .|++|+++++|++|..++++ +.|++.+|++++
T Consensus       131 ~~~~~l~~~L~~~~~~~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~  179 (447)
T 2i0z_A          131 NKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLE  179 (447)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEE
T ss_pred             CCHHHHHHHHHHHHHHCCCEEEeCcEEEEEEecCCcEEEEEECCCCEEE
Confidence            345678899998888 89999999999999988777 788888887554

>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}

Probab=84.16  E-value=0.54  Score=46.85  Aligned_cols=38  Identities=5%  Similarity=-0.036  Sum_probs=30.9

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE-EEEeC
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV-KAVDQ  343 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv-~V~~~  343 (350)
                      ..+..+|++.+. .|++|+++++|++|..+++++ .|+..
T Consensus       170 ~~l~~~L~~~a~~~G~~i~~~~~V~~l~~~~g~v~gV~~~  209 (561)
T 3da1_A          170 ARLTLEIMKEAVARGAVALNYMKVESFIYDQGKVVGVVAK  209 (561)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEEE
T ss_pred             HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCeEEEEEEE
Confidence            568888888887 899999999999999988763 35543

>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*

Probab=84.09  E-value=0.53  Score=46.07  Aligned_cols=42  Identities=12%  Similarity=-0.127  Sum_probs=32.5

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEe---CCCc
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVD---QPIH  346 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~---~~G~  346 (350)
                      -..+..+|++.+. .|++|+++++|++|..+++.+.|++   .+|+
T Consensus       148 ~~~l~~~l~~~a~~~Gv~i~~~~~V~~l~~~~~~~~V~~~d~~~G~  193 (501)
T 2qcu_A          148 DARLVLANAQMVVRKGGEVLTRTRATSARRENGLWIVEAEDIDTGK  193 (501)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTTCC
T ss_pred             HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCEEEEEEEECCCCC
Confidence            4557888888877 7899999999999998876666665   3564

>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing protein, oxidoreductase; HET: FAD; 1.20A {Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB: 1c0i_A* 1c0l_A* 1c0k_A*

Probab=83.94  E-value=0.53  Score=43.58  Aligned_cols=23  Identities=17%  Similarity=0.161  Sum_probs=19.5

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      +|+||++|+   ++|++|+|+|+.+-
T Consensus        15 Gi~Gls~A~~La~~G~~V~vle~~~~   40 (363)
T 1c0p_A           15 GVIGLSSALILARKGYSVHILARDLP   40 (363)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESSCT
T ss_pred             CHHHHHHHHHHHhCCCEEEEEeccCC
Confidence            459999998   57999999999763

>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*

Probab=83.89  E-value=0.5  Score=45.69  Aligned_cols=39  Identities=15%  Similarity=0.159  Sum_probs=31.0

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC-C--Cc
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ-P--IH  346 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~-~--G~  346 (350)
                      +.+.+.+.+. .|++|+++++|++|..+++++.|+.. +  |+
T Consensus       212 ~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~~v~~~~~~~g~  254 (464)
T 2eq6_A          212 TAALLRRALEKEGIRVRTKTKAVGYEKKKDGLHVRLEPAEGGE  254 (464)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTEEEEEEEETTCCS
T ss_pred             HHHHHHHHHHhcCCEEEcCCEEEEEEEeCCEEEEEEeecCCCc
Confidence            5556666666 78999999999999988878777765 5  65

>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta strands, dimer, cavity, oxidoreductase; 2.30A {Pseudomonas putida}

Probab=83.75  E-value=0.49  Score=45.32  Aligned_cols=25  Identities=12%  Similarity=0.085  Sum_probs=20.7

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCC
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSS  104 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~d  104 (350)
                      +|+||    +||++|.   ++|++|+|+|+++
T Consensus        24 ~ViIVGaGpaGl~~A~~La~~G~~V~viE~~~   55 (430)
T 3ihm_A           24 RIGIVGAGTAGLHLGLFLRQHDVDVTVYTDRK   55 (430)
T ss_dssp             EEEEECCHHHHHHHHHHHHHTTCEEEEEESCC
T ss_pred             CEEEECCcHHHHHHHHHHHHCCCeEEEEcCCC
Confidence            45554    9999997   6899999999986

>3g3e_A D-amino-acid oxidase; FAD, flavoprotein, oxidoreductase, PER; HET: FAD G3E; 2.20A {Homo sapiens} PDB: 3cuk_A* 2e48_A* 2e49_A* 2e4a_A* 2e82_A* 2du8_A* 1ve9_A* 1dao_A* 1ddo_A* 1kif_A* 1an9_A* 1evi_A*

Probab=83.63  E-value=0.29  Score=45.17  Aligned_cols=27  Identities=15%  Similarity=-0.097  Sum_probs=20.5

Q ss_pred             ehhhHhHhhh---cCC------CCEEEEecCCCCCc
Q psy7666          82 LVIRILCTVL---RIS------TPITLLESSSRLGG  108 (350)
Q Consensus        82 ~viaGLaaA~---~~G------~~VtVlEa~drvGG  108 (350)
                      ++|+||++|+   ++|      .+|+|+|+..-.+|
T Consensus         8 gGi~Gls~A~~La~~G~~~~p~~~V~vlE~~~~~~~   43 (351)
T 3g3e_A            8 AGVIGLSTALCIHERYHSVLQPLDIKVYADRFTPLT   43 (351)
T ss_dssp             CSHHHHHHHHHHHHHHTTTSSSCEEEEEESSCGGGS
T ss_pred             CCHHHHHHHHHHHHhccccCCCceEEEEECCCCCCC
Confidence            3459999998   457      99999999864333

>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*

Probab=83.62  E-value=0.47  Score=47.66  Aligned_cols=26  Identities=12%  Similarity=-0.077  Sum_probs=21.7

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      ++|||+||+   ++|.+|+|+|+.+..||
T Consensus        16 G~AGl~AA~~la~~G~~V~vlEK~~~~~g   44 (588)
T 2wdq_A           16 GGAGMRAALQISQSGQTCALLSKVFPTRS   44 (588)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEESSCGGGS
T ss_pred             CHHHHHHHHHHHHCCCcEEEEecCCCCCC
Confidence            349999998   56999999999887654

>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*

Probab=83.58  E-value=0.39  Score=46.64  Aligned_cols=32  Identities=16%  Similarity=0.092  Sum_probs=26.6

Q ss_pred             ceeehh----hHhHhhh---cCC--CCEEEEecCCCCCcce
Q psy7666          79 LLLLVI----RILCTVL---RIS--TPITLLESSSRLGGWV  110 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G--~~VtVlEa~drvGGRi  110 (350)
                      ++|+||    |||+||.   +.|  ++|+|+|+.+++||++
T Consensus         7 ~~vvIIG~G~aGl~aA~~l~~~g~~~~V~vie~~~~~gg~~   47 (460)
T 1cjc_A            7 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLV   47 (460)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHH
T ss_pred             ceEEEECcCHHHHHHHHHHHhcCCCCCEEEEeCCCcCCcee
Confidence            457666    8999987   457  9999999999999976

>1lqt_A FPRA; NADP+ derivative, oxidoreductase, structural G PSI, protein structure initiative, TB structural genomics consortium, TBSGC; HET: FAD ODP; 1.05A {Mycobacterium tuberculosis} SCOP: c.3.1.1 c.4.1.1 PDB: 1lqu_A* 2c7g_A*

Probab=83.56  E-value=0.32  Score=47.22  Aligned_cols=33  Identities=15%  Similarity=0.279  Sum_probs=27.3

Q ss_pred             ceeehh----hHhHhhh---c-C------CCCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---R-I------STPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~-~------G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||    |||+||.   + .      |++|+|+|+.+.+||.++
T Consensus         4 ~~VvIIG~G~aGl~aA~~L~~~~~~~~~~g~~V~lie~~~~~gg~~~   50 (456)
T 1lqt_A            4 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   50 (456)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             CEEEEECcCHHHHHHHHHHHhhCccccCCCCeEEEEecCCCCCCccc
Confidence            456666    9999986   5 5      999999999999999873

>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*

Probab=83.19  E-value=1.4  Score=40.71  Aligned_cols=25  Identities=4%  Similarity=-0.121  Sum_probs=20.9

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      +++||++|+   ++|++|+|+|+.+..+
T Consensus        12 G~~Gl~~A~~La~~G~~V~vie~~~~~~   39 (389)
T 2gf3_A           12 GSMGMAAGYQLAKQGVKTLLVDAFDPPH   39 (389)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECSSCSSC
T ss_pred             CHHHHHHHHHHHhCCCeEEEEeCCCCCC
Confidence            459999998   6799999999987655

>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*

Probab=82.99  E-value=0.32  Score=46.05  Aligned_cols=40  Identities=5%  Similarity=0.043  Sum_probs=28.5

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ..+.+.+.+.+. .|++++++++|++|+.  ++  |+..+|+++.
T Consensus       218 ~~~~~~~~~~l~~~gV~~~~~~~v~~i~~--~~--v~~~~g~~~~  258 (409)
T 3h8l_A          218 PNSRKAVASIYNQLGIKLVHNFKIKEIRE--HE--IVDEKGNTIP  258 (409)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSCCEEEECS--SE--EEETTSCEEE
T ss_pred             HHHHHHHHHHHHHCCCEEEcCCceEEECC--Ce--EEECCCCEEe
Confidence            346666677676 6899999999999964  33  5666776653

>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}

Probab=82.81  E-value=0.69  Score=45.35  Aligned_cols=21  Identities=14%  Similarity=-0.067  Sum_probs=18.8

Q ss_pred             hhHhHhhh---cCCCCEEEEecCC
Q psy7666          84 IRILCTVL---RISTPITLLESSS  104 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~d  104 (350)
                      ++||++|+   ++|++|+|+|+.+
T Consensus        17 ~aGl~aA~~La~~G~~V~liE~~~   40 (512)
T 3e1t_A           17 PGGSTLASFVAMRGHRVLLLEREA   40 (512)
T ss_dssp             HHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             HHHHHHHHHHHhCCCCEEEEccCC
Confidence            49999987   6799999999997

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=82.79  E-value=0.62  Score=43.68  Aligned_cols=24  Identities=17%  Similarity=0.102  Sum_probs=20.3

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRL  106 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drv  106 (350)
                      +++||++|+   ++|++|+|+|+++..
T Consensus        15 G~aGl~~A~~L~~~G~~V~viE~~~~~   41 (399)
T 2x3n_A           15 GIGGAMLAYLLGRQGHRVVVVEQARRE   41 (399)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECSSCCC
T ss_pred             CHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence            349999997   679999999998765

>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1

Probab=82.72  E-value=0.56  Score=45.87  Aligned_cols=41  Identities=7%  Similarity=0.134  Sum_probs=32.7

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCce
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQ  347 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~  347 (350)
                      .+.+.+.+.|. .|++|+++++|++|..++++ +.|+..+|++
T Consensus       218 ~~~~~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~  260 (500)
T 1onf_A          218 SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRI  260 (500)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCE
T ss_pred             hhHHHHHHHHHhCCCEEEECCEEEEEEEcCCceEEEEECCCcE
Confidence            36666777777 78999999999999886543 7888888875

>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}

Probab=82.71  E-value=1.5  Score=40.46  Aligned_cols=27  Identities=4%  Similarity=-0.167  Sum_probs=22.4

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      +|+||++|+   ++|++|+|+|+.+..+|.
T Consensus        11 Gi~Gl~~A~~La~~G~~V~vle~~~~~~~~   40 (372)
T 2uzz_A           11 GSVGAAAGYYATRAGLNVLMTDAHMPPHQH   40 (372)
T ss_dssp             THHHHHHHHHHHHTTCCEEEECSSCSSSSS
T ss_pred             CHHHHHHHHHHHHCCCeEEEEecCCCCCCC
Confidence            459999998   679999999998877654

>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}

Probab=82.61  E-value=1.4  Score=41.29  Aligned_cols=44  Identities=11%  Similarity=0.113  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhhc-C-CCEEEeCcceeEEEEeCCeE--EEEeCCCceec
Q psy7666         306 QTIVNTLGEHLS-N-KVEVKMDTTCTNLEFLEKGV--KAVDQPIHQMT  349 (350)
Q Consensus       306 ~~L~~aLa~~L~-~-g~~I~l~~~V~~I~~~~~gv--~V~~~~G~~~~  349 (350)
                      ..+.+.|.+.+. . |++|+++++|++|+.++++|  .|++.+|++++
T Consensus       107 ~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~  154 (399)
T 2x3n_A          107 ESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLR  154 (399)
T ss_dssp             HHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEE
T ss_pred             HHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEE
Confidence            457778888887 4 89999999999999988888  89998887654

>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}

Probab=82.36  E-value=0.43  Score=46.21  Aligned_cols=44  Identities=20%  Similarity=0.179  Sum_probs=35.4

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      ..+.+.+.+.+. .|++|+++++|++|..+++++.|+..+|+++.
T Consensus       202 ~~~~~~l~~~l~~~GV~i~~~~~v~~i~~~~~~v~v~~~~g~~i~  246 (472)
T 3iwa_A          202 KSLSQMLRHDLEKNDVVVHTGEKVVRLEGENGKVARVITDKRTLD  246 (472)
T ss_dssp             HHHHHHHHHHHHHTTCEEECSCCEEEEEESSSBEEEEEESSCEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEccCCeEEEEEeCCCEEE
Confidence            346667777776 78999999999999987777888888887654

>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}

Probab=82.34  E-value=1.7  Score=40.27  Aligned_cols=26  Identities=15%  Similarity=0.119  Sum_probs=21.1

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      ++++||++|+   ++|++|+|+|+. .+|+
T Consensus        13 gGi~Gl~~A~~La~~G~~V~lle~~-~~~~   41 (382)
T 1y56_B           13 GGIVGVTIAHELAKRGEEVTVIEKR-FIGS   41 (382)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSS-STTC
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEeCC-CCCC
Confidence            3459999998   679999999998 4554

>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*

Probab=82.33  E-value=1.1  Score=41.36  Aligned_cols=30  Identities=20%  Similarity=0.108  Sum_probs=23.1

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      .+|+||    +||++|+   ++|++|+|+|+.+..+|
T Consensus        18 ~dvvIIGgG~~Gl~~A~~La~~G~~V~llE~~~~~~g   54 (382)
T 1ryi_A           18 YEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGR   54 (382)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSTTTT
T ss_pred             CCEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCCCcc
Confidence            345554    9999998   67999999999865444

>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}

Probab=82.18  E-value=0.56  Score=44.40  Aligned_cols=26  Identities=8%  Similarity=0.014  Sum_probs=20.4

Q ss_pred             hhhHhHhhh---cC--CCCEEEEecCCCCCc
Q psy7666          83 VIRILCTVL---RI--STPITLLESSSRLGG  108 (350)
Q Consensus        83 viaGLaaA~---~~--G~~VtVlEa~drvGG  108 (350)
                      +|+||++|+   ++  |++|+|+|+.+..+|
T Consensus        45 Gi~Gls~A~~La~~~pG~~V~vlE~~~~~~~   75 (405)
T 3c4n_A           45 GRMGAACAFYLRQLAPGRSLLLVEEGGLPNE   75 (405)
T ss_dssp             SHHHHHHHHHHHHHCTTSCEEEECSSCSSCT
T ss_pred             cHHHHHHHHHHHhcCCCCeEEEEeCCCCCCc
Confidence            349999997   56  999999999765443

>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*

Probab=81.94  E-value=0.66  Score=45.04  Aligned_cols=38  Identities=5%  Similarity=0.059  Sum_probs=28.8

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEEeCCC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAVDQPI  345 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~~~~G  345 (350)
                      +.+.+.+.|. .|++|+++++|++|+..++ .+.|+..++
T Consensus       229 ~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~v~~~~~  268 (483)
T 3dgh_A          229 MAELVAASMEERGIPFLRKTVPLSVEKQDDGKLLVKYKNV  268 (483)
T ss_dssp             HHHHHHHHHHHTTCCEEETEEEEEEEECTTSCEEEEEEET
T ss_pred             HHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCcEEEEEecC
Confidence            5566677776 7899999999999998655 466666554

>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*

Probab=81.90  E-value=0.66  Score=46.02  Aligned_cols=27  Identities=15%  Similarity=0.047  Sum_probs=21.3

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      +++|||+||+   + |.+|+|+|+.+..||.
T Consensus        16 ~G~AGl~aAl~la~-G~~V~vlEk~~~~~g~   45 (540)
T 1chu_A           16 SGAAGLSLALRLAD-QHQVIVLSKGPVTEGS   45 (540)
T ss_dssp             CSHHHHHHHHHHTT-TSCEEEECSSCTTC--
T ss_pred             ccHHHHHHHHHHhc-CCcEEEEECCCCCCCC
Confidence            3459999998   4 9999999999887764

>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...

Probab=81.82  E-value=0.67  Score=46.89  Aligned_cols=26  Identities=4%  Similarity=-0.107  Sum_probs=23.0

Q ss_pred             hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          85 RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        85 aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      +||+||.   ++|++|+|+|+.+..||..
T Consensus        57 aGl~aA~~l~~~G~~V~liE~~~~~gg~~   85 (623)
T 3pl8_A           57 IGCTYARELVGAGYKVAMFDIGEIDSGLK   85 (623)
T ss_dssp             HHHHHHHHHHHTTCEEEEECSSCCCSSSS
T ss_pred             HHHHHHHHHHhCCCcEEEEeccCCCCCcc
Confidence            9999987   6799999999999999843

>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}

Probab=81.80  E-value=0.86  Score=44.80  Aligned_cols=25  Identities=20%  Similarity=0.244  Sum_probs=21.1

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      +++||++|+   +.|.+|+|+|+.+.++
T Consensus        14 G~aGl~~A~~La~~G~~v~viEr~~~~~   41 (535)
T 3ihg_A           14 GLGGLSTAMFLARQGVRVLVVERRPGLS   41 (535)
T ss_dssp             SHHHHHHHHHHHTTTCCEEEECSSSSCC
T ss_pred             CHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            349999997   6799999999987654

>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*

Probab=81.24  E-value=0.62  Score=44.80  Aligned_cols=25  Identities=16%  Similarity=-0.037  Sum_probs=20.6

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRL  106 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drv  106 (350)
                      ++++||++|+   ++|++|+|+|+.+..
T Consensus        14 aG~aGl~aA~~La~~G~~V~vlE~~~~~   41 (453)
T 3atr_A           14 GGFAGSSAAYQLSRRGLKILLVDSKPWN   41 (453)
T ss_dssp             CSHHHHHHHHHHSSSSCCEEEECSSCGG
T ss_pred             cCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence            3459999997   579999999998753

>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...

Probab=80.94  E-value=0.67  Score=46.87  Aligned_cols=26  Identities=4%  Similarity=-0.207  Sum_probs=21.5

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      +|||+||+   ++|.+|+|+|+....||.
T Consensus        28 ~AGl~AAl~aa~~G~~V~vlEK~~~~~g~   56 (621)
T 2h88_A           28 GAGLRAAFGLSEAGFNTACVTKLFPTRSH   56 (621)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEESSCGGGSG
T ss_pred             HHHHHHHHHHHHCCCcEEEEeccCCCCCC
Confidence            49999998   579999999998766554

>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5

Probab=80.61  E-value=0.86  Score=40.85  Aligned_cols=26  Identities=19%  Similarity=0.248  Sum_probs=21.6

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      .|||+||.   ++|++|+|+|.  ++||.+.
T Consensus        11 ~aGl~aA~~l~~~g~~v~li~~--~~gG~~~   39 (310)
T 1fl2_A           11 PAGAAAAIYSARKGIRTGLMGE--RFGGQIL   39 (310)
T ss_dssp             HHHHHHHHHHHTTTCCEEEECS--STTGGGG
T ss_pred             HHHHHHHHHHHHCCCcEEEEeC--CCCceec
Confidence            49999987   57999999985  6899864

>4g6h_A Rotenone-insensitive NADH-ubiquinone oxidoreducta mitochondrial; rossmann fold, electron transfer, FAD, oxidoreductase; HET: FAD NAD; 2.26A {Saccharomyces cerevisiae} PDB: 4g6g_A* 4g73_A* 4g74_A* 4g9k_A* 4gap_A* 4gav_A*

Probab=80.59  E-value=1  Score=44.19  Aligned_cols=40  Identities=15%  Similarity=0.163  Sum_probs=27.1

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCc
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIH  346 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~  346 (350)
                      .+.+.+.+.|. .|++|++|++|++|+.++-.+.+...||.
T Consensus       273 ~~~~~~~~~L~~~GV~v~~~~~v~~v~~~~~~~~~~~~dg~  313 (502)
T 4g6h_A          273 KLSSYAQSHLENTSIKVHLRTAVAKVEEKQLLAKTKHEDGK  313 (502)
T ss_dssp             HHHHHHHHHHHHTTCEEETTEEEEEECSSEEEEEEECTTSC
T ss_pred             HHHHHHHHHHHhcceeeecCceEEEEeCCceEEEEEecCcc
Confidence            46666677777 89999999999999643222344445554

>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*

Probab=80.44  E-value=0.68  Score=47.17  Aligned_cols=28  Identities=7%  Similarity=-0.128  Sum_probs=22.4

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      +++|||+||+   ++|.+|+|+|+....||.
T Consensus        13 gG~AGL~AAl~aae~G~~V~vlEK~~~~~g~   43 (660)
T 2bs2_A           13 GGLAGLRAAVATQQKGLSTIVLSLIPVKRSH   43 (660)
T ss_dssp             CSHHHHHHHHHHHTTTCCEEEECSSCGGGSG
T ss_pred             chHHHHHHHHHHHHCCCcEEEEeccCCCCCc
Confidence            3459999998   569999999998766554

>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...

Probab=80.39  E-value=0.6  Score=43.69  Aligned_cols=24  Identities=13%  Similarity=-0.085  Sum_probs=20.0

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      ++++||++|.   ++|++|+|+|+.+.
T Consensus        10 aG~aGl~~A~~L~~~G~~v~v~E~~~~   36 (394)
T 1k0i_A           10 AGPSGLLLGQLLHKAGIDNVILERQTP   36 (394)
T ss_dssp             CSHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            4459999997   57999999999874

>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*

Probab=80.26  E-value=0.88  Score=45.08  Aligned_cols=26  Identities=8%  Similarity=-0.144  Sum_probs=21.6

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          83 VIRILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      +++||++|.   ++|.+|+|+|+.+.+++
T Consensus        35 GpaGl~~A~~La~~G~~V~vlEr~~~~~~   63 (549)
T 2r0c_A           35 GPVGMALALDLAHRQVGHLVVEQTDGTIT   63 (549)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECSSCSCCS
T ss_pred             CHHHHHHHHHHHHCCCCEEEEeCCCCCCC
Confidence            349999997   67999999999987653

>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*

Probab=80.25  E-value=0.68  Score=44.96  Aligned_cols=37  Identities=5%  Similarity=0.069  Sum_probs=26.1

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ  343 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~  343 (350)
                      .+.+.+.+.+. .|++|+++++|++|..+++.+.|.+.
T Consensus       228 ~~~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~v~~v~~~  265 (480)
T 3cgb_A          228 DMAEYIYKEADKHHIEILTNENVKAFKGNERVEAVETD  265 (480)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSBEEEEEET
T ss_pred             HHHHHHHHHHHHcCcEEEcCCEEEEEEcCCcEEEEEEC
Confidence            35566677776 78999999999999875322345444

>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}

Probab=80.17  E-value=2.5  Score=42.02  Aligned_cols=44  Identities=9%  Similarity=0.154  Sum_probs=36.6

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE-EEEeCCCceec
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV-KAVDQPIHQMT  349 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv-~V~~~~G~~~~  349 (350)
                      ..+.+.|.+.+. .|++|+++++|++|..+++++ .|++.+|++++
T Consensus       220 ~~l~~~L~~~l~~~Gv~I~~~t~V~~I~~~~~~v~gV~l~~G~~i~  265 (549)
T 3nlc_A          220 VTMIEKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIK  265 (549)
T ss_dssp             HHHHHHHHHHHHHTTCEEESSCCEEEEEESSSBEEEEEETTSCEEE
T ss_pred             HHHHHHHHHHHHhcCCEEEeCCEEEEEEEeCCEEEEEEECCCCEEE
Confidence            557888888887 789999999999999987764 58888888664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	350
d2ivda1	347	c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen ox	1e-16
d1seza1	373	c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen ox	2e-13
d2v5za1	383	c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {H	9e-08
d2bi7a1	314	c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mu	1e-05
d2dw4a2	449	c.3.1.2 (A:274-654,A:764-831) Lysine-specific hist	2e-05
d1i8ta1	298	c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mu	7e-04
d2iida1	370	c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {M	0.001

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} Length = 347

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

 Score = 77.9 bits (190), Expect = 1e-16
 Identities = 53/245 (21%), Positives = 99/245 (40%), Gaps = 15/245 (6%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
             LLESS+RLGG V +     G + E+GP +   +      T  L   L L  ++     
Sbjct: 26  AVLLESSARLGGAVGTHALA-GYLVEQGPNSFLDREP---ATRALAAALNLEGRIRA--- 78

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
           + P A+ R +Y   +L  +P++  +   +        +       + +     DES+  F
Sbjct: 79  ADPAAKRRYVYTRGRLRSVPASPPAFLASDILPLGARLRVAGELFSRRAPEGVDESLAAF 138

Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKR 276
             R  G       + ++  GI AGD +++SV      L ++E+ H  +I GAI+   ++R
Sbjct: 139 GRRHLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQR 198

Query: 277 PDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEK 336
                         +     ++ + +GGLQ +++ L   L       +      L   + 
Sbjct: 199 QAA------LPAGTAPKLSGALSTFDGGLQVLIDALAASL--GDAAHVGARVEGLAREDG 250

Query: 337 GVKAV 341
           G + +
Sbjct: 251 GWRLI 255

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} Length = 373

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

 Score = 68.7 bits (166), Expect = 2e-13
 Identities = 60/247 (24%), Positives = 108/247 (43%), Gaps = 8/247 (3%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           +T+ E+  + GG +RSV    GLI+++G  T+        +   L++ LGL ++     S
Sbjct: 27  VTVFEAEGKAGGKLRSVSQD-GLIWDEGANTMTESEG---DVTFLIDSLGLREKQQFPLS 82

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSIL-HDLTTKTVPKSDESIYD 215
            +     R                S F +     + L+  IL  +     V  S ES+  
Sbjct: 83  QNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSG 142

Query: 216 FVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSK 275
           F  R FG EV DY +   + G C GD   +S++    +L+ LE+  G VI GAI+  +S 
Sbjct: 143 FFQRHFGKEVVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSP 202

Query: 276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLE 335
           + +            ++  +   +S  GG+QT+ + + + L  + E+++++    L    
Sbjct: 203 KNEKKQGPPKTSA--NKKRQRGSFSFLGGMQTLTDAICKDL-REDELRLNSRVLELSCSC 259

Query: 336 KGVKAVD 342
               A+D
Sbjct: 260 TEDSAID 266

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 9e-08
 Identities = 19/177 (10%), Positives = 60/177 (33%), Gaps = 20/177 (11%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           + +LE+  R+GG   ++++ +    + G   + P        L+L ++LGL    +    
Sbjct: 25  VVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN---RILRLAKELGLETYKVNEVE 81

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSD------ 210
                   + +V  K +     F  ++   +       +  + D+  +    +       
Sbjct: 82  R------LIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLA 135

Query: 211 -----ESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHG 262
                 ++ + + +   +E A    +  +      +  ++S  + +  + +      
Sbjct: 136 EEWDNMTMKELLDKLCWTESAKQLATLFVNLCVTAETHEVSALWFLWYVKQCGGTTR 192

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} Length = 314

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 19/157 (12%), Positives = 44/157 (28%), Gaps = 14/157 (8%)

Query: 97  ITLLESSSRLGGWVRSVQSPE--GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPI 154
           + +++    +GG     +  E   ++   GP           N +    ++         
Sbjct: 28  VHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNETVWNYVNKHAEM--------- 78

Query: 155 TSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIY 214
               P        VN ++  LP N  ++ +  S    P     L      +     ++  
Sbjct: 79  ---MPYVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEKGDSTIADPQTFE 135

Query: 215 DFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLM 251
           +   R  G E+ +                ++  + L 
Sbjct: 136 EEALRFIGKELYEAFFKGYTIKQWGMQPSELPASILK 172

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} Length = 449

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 2e-05
 Identities = 31/233 (13%), Positives = 76/233 (32%), Gaps = 6/233 (2%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           +TLLE+  R+GG V + +     + + G   +   G  G     + + + +    I    
Sbjct: 31  VTLLEARDRVGGRVATFRKG-NYVADLGAMVVT--GLGGNPMAVVSKQVNMELAKIKQKC 87

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
               A  + +    K   +   F  L +  S  S  L F++L++    ++ ++ E +   
Sbjct: 88  PLYEANGQAVPKE-KDEMVEQEFNRLLEATSYLSHQLDFNVLNN-KPVSLGQALEVVIQL 145

Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKR 276
             +    E  ++    +       +     VN         +Q          +++ ++ 
Sbjct: 146 QEKHVKDEQIEHWKKIVKTQEELKELLNKMVNLKEKIKELHQQYKEASEVKPPRDITAEF 205

Query: 277 PDLSGYEE-SELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTC 328
              S + + + L +       +   +E  LQ +       +      +     
Sbjct: 206 LVKSKHRDLTALCKEYDELAETQGKLEEKLQELEANPPSDVYLSSRDRQILDW 258

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 298

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 38.6 bits (89), Expect = 7e-04
 Identities = 18/150 (12%), Positives = 44/150 (29%), Gaps = 12/150 (8%)

Query: 97  ITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITS 156
           + ++E  + +GG   +       I + G        +               + ++    
Sbjct: 27  VLVIEKRNHIGGNAYTEDCEGIQIHKYGAHIFHTNDK---------YIWDYVNDLVEF-- 75

Query: 157 SHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDF 216
            +    + L     KL  LP N  +  +           +I++    K   K  E++ + 
Sbjct: 76  -NRFTNSPLAIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKYGDKVPENLEEQ 134

Query: 217 VSRRFGSEVADYAVSSMICGICAGDAKKIS 246
                G ++    +           AK++ 
Sbjct: 135 AISLVGEDLYQALIKGYTEKQWGRSAKELP 164

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} Length = 370

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 28/240 (11%), Positives = 61/240 (25%), Gaps = 13/240 (5%)

Query: 97  ITLLESSSRLGGWVRSVQSPE-GLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPIT 155
           +T+LE+S R GG VR+ ++ E G     GP  +  K R      + +    L        
Sbjct: 56  VTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHR---IVREYIRKFDLRLNEFSQE 112

Query: 156 SSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYD 215
           +      N   ++     K+            P            L  +++ K  E +  
Sbjct: 113 N-----DNAWYFIKNIRKKVGEVKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKR 167

Query: 216 FVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSK 275
                  ++   Y+    +          + +   +        +              +
Sbjct: 168 TNCSYILNKYDTYSTKEYLIKEGDLSPGAVDMIGDLLNEDSGYYVSFIESLKHDDIFAYE 227

Query: 276 RPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLE 335
           +      +  +    +                 V    +    KV V  +T       + 
Sbjct: 228 KRFDEIVDGMDKLPTAMYRDIQDKVH---FNAQV-IKIQQNDQKVTVVYETLSKETPSVT 283

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	350
d2ivda1	347	Protoporphyrinogen oxidase {Myxococcus xanthus [Ta	99.87
d2v5za1	383	Monoamine oxidase B {Human (Homo sapiens) [TaxId:	99.83
d1seza1	373	Protoporphyrinogen oxidase {Tobacco (Nicotiana tab	99.79
d2bcgg1	297	Guanine nucleotide dissociation inhibitor, GDI {Ba	99.78
d2bi7a1	314	UDP-galactopyranose mutase, N-terminal domain {Kle	99.68
d2iida1	370	L-aminoacid oxidase {Malayan pit viper (Calloselas	99.67
d1i8ta1	298	UDP-galactopyranose mutase, N-terminal domain {Esc	99.6
d1d5ta1	336	Guanine nucleotide dissociation inhibitor, GDI {Co	99.54
d2dw4a2	449	Lysine-specific histone demethylase 1, LSD1 {Human	99.52
d1b5qa1	347	Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}	99.04
d1vg0a1	491	Rab escort protein 1 {Rat (Rattus norvegicus) [Tax	98.59
d1ps9a3	179	2,4-dienoyl-CoA reductase, middle domain {Escheric	97.73
d1lqta2	239	Ferredoxin:NADP reductase FprA {Mycobacterium tube	97.06
d1cjca2	230	Adrenodoxin reductase of mitochondrial p450 system	96.95
d1djqa3	233	Trimethylamine dehydrogenase, middle domain {Methy	96.86
d1gtea4	196	Dihydropyrimidine dehydrogenase, domain 2 {Pig (Su	96.78
d2gv8a1	335	Flavin-dependent monoxygenase SPBP16F5.08c {Schizo	96.66
d2voua1	265	Dihydroxypyridine hydroxylase DhpH {Arthrobacter n	96.47
d1w4xa1	298	Phenylacetone monooxygenase {Thermobifida fusca [T	96.23
d1v59a1	233	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	95.94
d1rp0a1	278	Thiazole biosynthetic enzyme Thi4 {Thale cress(Ara	95.92
d1c0pa1	268	D-aminoacid oxidase, N-terminal domain {Rhodotorul	95.8
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	95.56
d1dxla1	221	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	95.44
d2gqfa1	253	Hypothetical protein HI0933 {Haemophilus influenza	95.36
d1ojta1	229	Dihydrolipoamide dehydrogenase {Neisseria meningit	94.79
d2gjca1	311	Thiazole biosynthetic enzyme Thi4 {Baker's yeast (	94.74
d1m6ia2	137	Apoptosis-inducing factor (AIF) {Human (Homo sapie	94.51
d1aoga2	117	Trypanothione reductase {Trypanosoma cruzi [TaxId:	93.97
d1y0pa2	308	Flavocytochrome c3 (respiratory fumarate reductase	93.89
d3c96a1	288	Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId:	93.83
d1gesa1	217	Glutathione reductase {Escherichia coli [TaxId: 56	93.75
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	93.7
d1d4ca2	322	Flavocytochrome c3 (respiratory fumarate reductase	93.69
d2i0za1	251	Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]	93.08
d2gmha1	380	Electron transfer flavoprotein-ubiquinone oxidored	93.04
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	92.99
d1qo8a2	317	Flavocytochrome c3 (respiratory fumarate reductase	92.98
d2gf3a1	281	Sarcosine oxidase {Bacillus sp., strain b0618 [Tax	92.46
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	92.29
d1trba1	190	Thioredoxin reductase {Escherichia coli [TaxId: 56	91.88
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	91.7
d2bs2a2	336	Fumarate reductase {Wolinella succinogenes [TaxId:	91.15
d1feca2	117	Trypanothione reductase {Crithidia fasciculata [Ta	90.9
d1ebda1	223	Dihydrolipoamide dehydrogenase {Bacillus stearothe	90.86
d3lada1	229	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.85
d1onfa1	259	Glutathione reductase {Plasmodium falciparum [TaxI	90.74
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	90.63
d1fl2a1	184	Alkyl hydroperoxide reductase subunit F (AhpF), C-	90.59
d3lada2	119	Dihydrolipoamide dehydrogenase {Azotobacter vinela	90.35
d1mo9a1	261	NADH-dependent 2-ketopropyl coenzyme M oxidoreduct	90.14
d1ryia1	276	Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}	89.96
d1lvla1	220	Dihydrolipoamide dehydrogenase {Pseudomonas putida	89.56
d1neka2	330	Succinate dehydogenase {Escherichia coli [TaxId: 5	89.56
d1chua2	305	L-aspartate oxidase {Escherichia coli [TaxId: 562]	89.52
d1xdia1	233	Dihydrolipoamide dehydrogenase {Mycobacterium tube	89.34
d1h6va1	235	Mammalian thioredoxin reductase {Rat (Rattus norve	89.14
d3grsa1	221	Glutathione reductase {Human (Homo sapiens) [TaxId	89.08
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	89.07
d1jnra2	356	Adenylylsulfate reductase A subunit {Archaeon Arch	88.55
d1k0ia1	292	p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas a	88.28
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	87.89
d1lvla2	115	Dihydrolipoamide dehydrogenase {Pseudomonas putida	87.6
d1vdca1	192	Thioredoxin reductase {Mouse-ear cress (Arabidopsi	86.96
d1pj5a2	305	N,N-dimethylglycine oxidase {Arthrobacter globifor	86.69
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	86.23
d2f5va1	379	Pyranose 2-oxidase {White-rot fungus (Peniophora s	86.16
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	85.16
d1pn0a1	360	Phenol hydroxylase {Soil-living yeast (Trichosporo	85.1
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	84.6
d1n4wa1	367	Cholesterol oxidase of GMC family {Streptomyces sp	84.55
d1ojta2	125	Dihydrolipoamide dehydrogenase {Neisseria meningit	84.18
d1nhpa2	123	NADH peroxidase {Enterococcus faecalis [TaxId: 135	83.49
d3grsa2	125	Glutathione reductase {Human (Homo sapiens) [TaxId	82.67
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	81.81
d3coxa1	370	Cholesterol oxidase of GMC family {Brevibacterium	80.71
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	80.58
d1kf6a2	311	Fumarate reductase {Escherichia coli [TaxId: 562]}	80.39
d1q1ra2	133	Putidaredoxin reductase {Pseudomonas putida [TaxId	80.32
d1kifa1	246	D-aminoacid oxidase, N-terminal domain {Pig (Sus s	80.02

>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Myxococcus xanthus [TaxId: 34]

Probab=99.87  E-value=6.1e-21  Score=172.11  Aligned_cols=250  Identities=23%  Similarity=0.336  Sum_probs=162.8

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      +|+||    |||+||+   ++|++|+||||++++|||++|++ .+|+.+|.|++++.+.++   .+.++++++++...+.
T Consensus         2 ~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~---~~~~l~~~~~~~~~~~   77 (347)
T d2ivda1           2 NVAVVGGGISGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA-LAGYLVEQGPNSFLDREP---ATRALAAALNLEGRIR   77 (347)
T ss_dssp             CEEEECCBHHHHHHHHHHHTTTCCEEEECSSSSSBTTCCEEE-ETTEEEESSCCCEETTCH---HHHHHHHHTTCGGGEE
T ss_pred             eEEEECCCHHHHHHHHHHHhCCCCEEEEecCCCCCceEEEEe-eCCEEEecCceEEecCCH---HHHHHHHHhcccccce
Confidence            45555    9999998   68999999999999999999999 599999999999988876   8999999999977655


Q ss_pred             ccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCC-CCCCCCcHHHHHHHhhChHHHHHHHH
Q psy7666         153 PITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKT-VPKSDESIYDFVSRRFGSEVADYAVS  231 (350)
Q Consensus       153 ~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~-~~~~~~Sv~~~l~~~~~~~~~~~~~~  231 (350)
                      ...   +.......................... .............+.+... ......++.+++.+............
T Consensus        78 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  153 (347)
T d2ivda1          78 AAD---PAAKRRYVYTRGRLRSVPASPPAFLAS-DILPLGARLRVAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLD  153 (347)
T ss_dssp             CSC---SSCCCEEEEETTEEEECCCSHHHHHTC-SSSCHHHHHHHHGGGGCCCCCTTCCCBHHHHHHHHTCHHHHHHTHH
T ss_pred             ecc---ccccceeeeccccccccccchhhhhhh-hhccchhhHHHHhhhhhhhccccccccHHHHHHhhhhcchhccccc
Confidence            432   333334444444444443333333222 2233333344444444332 34567889999988877777777777


Q ss_pred             HhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHH
Q psy7666         232 SMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNT  311 (350)
Q Consensus       232 pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~a  311 (350)
                      ++....++...+..+....++.+........+................      .............+.+.||++.++++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~g~~~~~~~  227 (347)
T d2ivda1         154 AVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAA------LPAGTAPKLSGALSTFDGGLQVLIDA  227 (347)
T ss_dssp             HHHHHHHCCCTTTBBHHHHCHHHHHHHHHHSSHHHHHHHHHHHHTCC----------CCSCCCCCCEEEETTCTHHHHHH
T ss_pred             hhhhhhhccccchhhHHHHHHHHHHhhhhccchhhhhhhccchhcccc------ccccccccccCcccccCCchHHHHHH
Confidence            877777777777777777666665444333332222211100000000      00000011233567899999999999


Q ss_pred             HHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         312 LGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       312 La~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      |++.++  ++|++|++|++|+.++++++|++.++
T Consensus       228 l~~~~g--~~i~~~~~V~~I~~~~~~~~v~~~~~  259 (347)
T d2ivda1         228 LAASLG--DAAHVGARVEGLAREDGGWRLIIEEH  259 (347)
T ss_dssp             HHHHHG--GGEESSEEEEEEECC--CCEEEEEET
T ss_pred             HHHHhh--cccccCCEEEEEEEeCCeEEEEEEcC
Confidence            999985  89999999999999888877765433

>d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monoamine oxidase B
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=5.8e-20  Score=170.05  Aligned_cols=231  Identities=13%  Similarity=0.165  Sum_probs=150.4

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSH  158 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~  158 (350)
                      |++|||+||+   ++|++|+||||++++|||++|.+..+|+.+|+|++|+++.++   .+.++++++|++.....     
T Consensus         7 aG~aGL~aA~~L~~~G~~V~VlE~~~~~GGr~~t~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~lgl~~~~~~-----   78 (383)
T d2v5za1           7 GGISGMAAAKLLHDSGLNVVVLEARDRVGGRTYTLRNQKVKYVDLGGSYVGPTQN---RILRLAKELGLETYKVN-----   78 (383)
T ss_dssp             CBHHHHHHHHHHHHTTCCEEEEESSSSSBTTCCEECCTTTSCEESSCCEECTTCH---HHHHHHHHTTCCEEECC-----
T ss_pred             CCHHHHHHHHHHHhCCCCEEEEecCCCCcceeeEEECCCCcEEeCCceEeCCCCh---HHHHHHHHcCCcceecc-----
Confidence            5569999998   689999999999999999999986689999999999988776   89999999999643222     


Q ss_pred             CCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcC------C-----CCCCCCcHHHHHHHhhChHHHH
Q psy7666         159 PTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTK------T-----VPKSDESIYDFVSRRFGSEVAD  227 (350)
Q Consensus       159 p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~------~-----~~~~~~Sv~~~l~~~~~~~~~~  227 (350)
                       .........+........................+.+.+......      .     ...+..++.+++.+........
T Consensus        79 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (383)
T d2v5za1          79 -EVERLIHHVKGKSYPFRGPFPPVWNPITYLDHNNFWRTMDDMGREIPSDAPWKAPLAEEWDNMTMKELLDKLCWTESAK  157 (383)
T ss_dssp             -CSSEEEEEETTEEEEECSSSCCCCSHHHHHHHHHHHHHHHHHHTTSCTTCGGGSTTHHHHHTSBHHHHHHHHCSSHHHH
T ss_pred             -CccceEEecCcccccccccccchhhhhhhhhHHHHHHHHHHhhhhcccccccchhhhhhhhhhHHHHHHHHhccchHHH
Confidence             212233344444443322211000000000001122222221110      0     1134678999998776666666


Q ss_pred             HHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHH
Q psy7666         228 YAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQT  307 (350)
Q Consensus       228 ~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~  307 (350)
                      .++..+....++..+...++...+..+.    ..+.. ....    .                 .......+.+.+|++.
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-~~~~----~-----------------~~~~~~~~~~~~~~~~  211 (383)
T d2v5za1         158 QLATLFVNLCVTAETHEVSALWFLWYVK----QCGGT-TRII----S-----------------TTNGGQERKFVGGSGQ  211 (383)
T ss_dssp             HHHHHHHHHHHSSCTTTSBHHHHHHHHH----TTTCH-HHHH----C-----------------STTSTTSEEETTCTHH
T ss_pred             HHHHHhhhhhhccccchhhHHHHHHHHH----hhccc-cccc----c-----------------cccCcceeeeccchhH
Confidence            6777767767777777777655433221    11111 0110    0                 0112235779999999


Q ss_pred             HHHHHHHhhcCCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         308 IVNTLGEHLSNKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       308 L~~aLa~~L~~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +++++++..  |++|++|++|++|..++++|.|++.+|++++
T Consensus       212 ~~~~l~~~~--g~~i~~~~~v~~I~~~~~~v~v~~~~g~~~~  251 (383)
T d2v5za1         212 VSERIMDLL--GDRVKLERPVIYIDQTRENVLVETLNHEMYE  251 (383)
T ss_dssp             HHHHHHHHH--GGGEEESCCEEEEECSSSSEEEEETTSCEEE
T ss_pred             HHHHHHHHc--CCeEEecCcceEEEecCCeEEEEECCCCEEE
Confidence            999999887  4899999999999999999999999998875

>d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Protoporphyrinogen oxidase
species: Tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.79  E-value=1.8e-18  Score=155.55  Aligned_cols=243  Identities=27%  Similarity=0.441  Sum_probs=151.2

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCcc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQV  151 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l  151 (350)
                      |+|+||    |||+||+   ++|++|+|||+++++|||++|++ .+|+.+|.|+++|++.++   .+.++++++|+....
T Consensus         2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~~---~~~~~~~~~~~~~~~   77 (373)
T d1seza1           2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVS-QDGLIWDEGANTMTESEG---DVTFLIDSLGLREKQ   77 (373)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSSSSCSSCCEEE-ETTEEEESSCCCBCCCSH---HHHHHHHHTTCGGGE
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCCCCcCceEEec-cCCEEEecCceEEeCCCH---HHHHHHHHhCCcccc
Confidence            567777    9999998   68999999999999999999999 499999999999988876   999999999986533


Q ss_pred             cccCCCCCCCcceE-EEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhc------CCCCCCCCcHHHHHHHhhChH
Q psy7666         152 IPITSSHPTAQNRL-IYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTT------KTVPKSDESIYDFVSRRFGSE  224 (350)
Q Consensus       152 ~~~~~~~p~~~~~~-i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~------~~~~~~~~Sv~~~l~~~~~~~  224 (350)
                      ...     ...... .................... .............+.+.      ............+....++..
T Consensus        78 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (373)
T d1seza1          78 QFP-----LSQNKRYIARNGTPVLLPSNPIDLIKS-NFLSTGSKLQMLLEPILWKNKKLSQVSDSHESVSGFFQRHFGKE  151 (373)
T ss_dssp             ECC-----SSCCCEEEESSSSEEECCSSHHHHHHS-SSSCHHHHHHHHTHHHHC----------CCCBHHHHHHHHHCHH
T ss_pred             ccc-----cccccccccccccccccccchhhhhhc-cccchhhhhhhHHHHHHhhhccccccccccchhhhccccccccc
Confidence            321     111112 12222222222222222221 11222222222222111      112234556677666667766


Q ss_pred             HHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHh--hhcccceEEEec
Q psy7666         225 VADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRR--SRIEKWSVWSVE  302 (350)
Q Consensus       225 ~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~--~~~~~~~~~~~~  302 (350)
                      .......++....++.....++....++.+.......++.+.+...........    ........  ........+.+.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~  227 (373)
T d1seza1         152 VVDYLIDPFVAGTCGGDPDSLSMHHSFPELWNLEKRFGSVILGAIRSKLSPKNE----KKQGPPKTSANKKRQRGSFSFL  227 (373)
T ss_dssp             HHHTTHHHHHHHHHSCCGGGSBHHHHCHHHHHHHHHTSCHHHHHHHHTTC--------------CCCSCCSTTCSCBEET
T ss_pred             chhcccchhhhhhcccccccchhhhHHHHHHHhhhcchhhhhhHHHhhhccccc----cccchhhhhhhhcccceeeeec
Confidence            666677777777888888888887777776665555555555544221100000    00000000  011233567789


Q ss_pred             CcHHHHHHHHHHhhcCCCEEEeCcceeEEEEeCC
Q psy7666         303 GGLQTIVNTLGEHLSNKVEVKMDTTCTNLEFLEK  336 (350)
Q Consensus       303 GG~~~L~~aLa~~L~~g~~I~l~~~V~~I~~~~~  336 (350)
                      +|+++++++|++.+. +++|++|++|++|+.+.+
T Consensus       228 ~g~~~l~~~l~~~l~-~~~i~~~~~V~~i~~~~~  260 (373)
T d1seza1         228 GGMQTLTDAICKDLR-EDELRLNSRVLELSCSCT  260 (373)
T ss_dssp             TCTHHHHHHHHTTSC-TTTEETTCCEEEEEEECS
T ss_pred             ccchHHHHHHHHHhc-cceEecCCEEEEEEEeCC
Confidence            999999999999996 679999999999998765

>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Guanine nucleotide dissociation inhibitor, GDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2e-17  Score=144.46  Aligned_cols=230  Identities=8%  Similarity=0.034  Sum_probs=144.1

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEec-----------------------CCCeEEecCCceecCCCCCc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQS-----------------------PEGLIFEKGPRTIRPKGRLG  135 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~-----------------------~~G~~~D~Ga~~~~~~~~~~  135 (350)
                      ++++||+||.   ++|++|+|+||++++||+++|+..                       ..++.+|++++++....   
T Consensus        13 aG~~Gl~~A~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---   89 (297)
T d2bcgg1          13 TGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVTLSQLYEKFKQNPISKEERESKFGKDRDWNVDLIPKFLMANG---   89 (297)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSSSSCGGGCEECHHHHHHHHCSSCCCHHHHHHHHCCGGGCCEESSCCBEETTS---
T ss_pred             cCHHHHHHHHHHHHCCCCEEEEcCCCCCCcceEEeeccccccccCCCccccccccccccccccceeccCcccccCCC---
Confidence            4569999998   689999999999999999999752                       12467889999886544   


Q ss_pred             hHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHH---HHHH---HHHhhc------
Q psy7666         136 ANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPL---IFSI---LHDLTT------  203 (350)
Q Consensus       136 ~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~---~~~~---l~~~~~------  203 (350)
                       .+..++.+.+........     .....+++.++....+|.....++.. .......   +..+   +.....      
T Consensus        90 -~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (297)
T d2bcgg1          90 -ELTNILIHTDVTRYVDFK-----QVSGSYVFKQGKIYKVPANEIEAISS-PLMGIFEKRRMKKFLEWISSYKEDDLSTH  162 (297)
T ss_dssp             -HHHHHHHHHTGGGTCCEE-----ECCCEEEEETTEEEECCSSHHHHHHC-TTSCHHHHHHHHHHHHHHHHCBTTBGGGS
T ss_pred             -cceeeeeecccccccccc-----ccCcccccccCCccccccchhhhhhc-cccccccchhhhhhhhhhhhhhhccccch
Confidence             566666666654322221     11246778899988888775544432 1222111   1111   111111      


Q ss_pred             CCCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcc
Q psy7666         204 KTVPKSDESIYDFVSRRFGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYE  283 (350)
Q Consensus       204 ~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~  283 (350)
                      .....+..++.+++.+..-......++...+......+....++...+..+....       .... .            
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~-~------------  222 (297)
T d2bcgg1         163 QGLDLDKNTMDEVYYKFGLGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYC-------QSVA-R------------  222 (297)
T ss_dssp             TTCCTTTSBHHHHHHHTTCCHHHHHHHHHHTSCCSSSGGGGSBHHHHHHHHHHHH-------HHHH-H------------
T ss_pred             hhhcccchhhhhhhhhhccCHHHHHHHHHHHhhhccccccchhhhhhhhhhhhhh-------hccc-c------------
Confidence            1123456789999987644444455555544444444444455544333222110       0110 0            


Q ss_pred             hhHHHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC--eEEEEeCCCceecC
Q psy7666         284 ESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK--GVKAVDQPIHQMTK  350 (350)
Q Consensus       284 ~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~--gv~V~~~~G~~~~~  350 (350)
                               ....++++++||+++|+++|++.+. .|++|++|++|++|..+++  .+.+...+|+++++
T Consensus       223 ---------~~~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~I~~~~~~~~v~~v~~~g~~~~a  283 (297)
T d2bcgg1         223 ---------YGKSPYLYPMYGLGELPQGFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKA  283 (297)
T ss_dssp             ---------HSSCSEEEETTCTTHHHHHHHHHHHHTTCEEECSCCCCEEEEETTTTEEEEEEETTEEEEC
T ss_pred             ---------cccCcceeccCcHHHHHHHHHHHHHhcCCEEEeCCEeeEEEEECCCCEEEEEEcCCEEEEC
Confidence                     0123578899999999999999998 8999999999999988754  46655677887753

>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Klebsiella pneumoniae [TaxId: 573]

Probab=99.68  E-value=1.2e-16  Score=148.10  Aligned_cols=207  Identities=11%  Similarity=0.176  Sum_probs=142.3

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEec--CCCeEEecCCceecCCCCCchHHHHHHHHcCCCC
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQS--PEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLAD  149 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~--~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~  149 (350)
                      |+|+||    |||+||+   ++|++|+|+|+++++||++.|+..  .+++..|.|||+|+...+   .+++++.++.   
T Consensus         3 KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~iGG~~~t~~~~~~g~~~~~~Gphif~t~~~---~v~~~~~~~~---   76 (314)
T d2bi7a1           3 KKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDARDSETNVMVHVYGPHIFHTDNE---TVWNYVNKHA---   76 (314)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSSGGGCEEECTTTCCEEETTSCCCEEESCH---HHHHHHHTTS---
T ss_pred             CEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCCCcCeeeEEEecCCCceEEecCceeecCccH---HHHHHHHHhh---
Confidence            455554    9999998   579999999999999999999863  267889999999998776   8899988764   


Q ss_pred             cccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCC-CCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHH
Q psy7666         150 QVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHS-PFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADY  228 (350)
Q Consensus       150 ~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~-~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~  228 (350)
                      ++.+      .......+.+|+.+++|..+..+..... .........++.... .....+..++.+|+.+.+|..+.+.
T Consensus        77 ~~~~------~~~~~~~~~~g~~~~~P~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~n~ee~~~~~~G~~lye~  149 (314)
T d2bi7a1          77 EMMP------YVNRVKATVNGQVFSLPINLHTINQFFSKTCSPDEARALIAEKG-DSTIADPQTFEEEALRFIGKELYEA  149 (314)
T ss_dssp             CEEE------CCCCEEEEETTEEEEESCCHHHHHHHTTCCCCHHHHHHHHHHHS-CCSCSSCCBHHHHHHHHHCHHHHHH
T ss_pred             hhhh------hccccceeecceeeccCccHHHHHHhcccccchHHHHHHHHHhh-hcccCCchhhhHHHHHhchhhhHHh
Confidence            2333      1234567789999999877544322211 222322333332222 2223456799999999999999999


Q ss_pred             HHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHH
Q psy7666         229 AVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTI  308 (350)
Q Consensus       229 ~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L  308 (350)
                      ++.|+...+|+.+++++++.++...         .+ . .        .     .+.. |    ....-...|.+|+.++
T Consensus       150 f~~pYt~K~Wg~~~~~L~~~~~~r~---------p~-r-~--------~-----~d~~-y----f~d~~q~~Pk~Gyt~~  200 (314)
T d2bi7a1         150 FFKGYTIKQWGMQPSELPASILKRL---------PV-R-F--------N-----YDDN-Y----FNHKFQGMPKCGYTQM  200 (314)
T ss_dssp             HTHHHHHHHHSSCGGGSBGGGCCSC---------CC-C-S--------S-----SCCC-S----CCCSEEEEETTHHHHH
T ss_pred             hcCcchhhhhccCCcccchhhhhcc---------ce-e-c--------c-----cccc-c----cchhhheeecccHHHH
Confidence            9999999999999999987653110         00 0 0        0     0000 0    1111135689999999


Q ss_pred             HHHHHHhhcCCCEEEeCccee
Q psy7666         309 VNTLGEHLSNKVEVKMDTTCT  329 (350)
Q Consensus       309 ~~aLa~~L~~g~~I~l~~~V~  329 (350)
                      ++.|.+.  .+.+|++++.+.
T Consensus       201 ~e~mL~~--~~i~v~ln~~~~  219 (314)
T d2bi7a1         201 IKSILNH--ENIKVDLQREFI  219 (314)
T ss_dssp             HHHHHCS--TTEEEEESCCCC
T ss_pred             HHHHHhC--CCCeeecccccc
Confidence            9988765  358999998864

>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: L-aminoacid oxidase
species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]

Probab=99.67  E-value=3.5e-16  Score=143.00  Aligned_cols=90  Identities=20%  Similarity=0.297  Sum_probs=70.3

Q ss_pred             CCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecC-CCeEEecCCceecCCCCCchHHHHHHHHcCCC
Q psy7666          77 DLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSP-EGLIFEKGPRTIRPKGRLGANTLKLVEDLGLA  148 (350)
Q Consensus        77 ~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~-~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~  148 (350)
                      .+++|+||    |||+||+   ++|++|+|||+++++|||++|++.. .|+.+|.|++++...++   .+.++++++++.
T Consensus        29 ~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~~~GG~~~t~~~~~~g~~~d~G~~~~~~~~~---~~~~l~~~~~~~  105 (370)
T d2iida1          29 NPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRLPEKHR---IVREYIRKFDLR  105 (370)
T ss_dssp             SCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSSSSBTTCCEEEETTTTEEEESSCCCEETTCH---HHHHHHHHTTCC
T ss_pred             CCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCCCCCCeeEEEecCCCCceeccCceeecCccH---HHHHHHHHhCCc
Confidence            34678776    9999998   6799999999999999999998742 57999999999987765   899999999986


Q ss_pred             CcccccCCCCCCCcceEEEeCCeEEE
Q psy7666         149 DQVIPITSSHPTAQNRLIYVNKKLHK  174 (350)
Q Consensus       149 ~~l~~~~~~~p~~~~~~i~~~g~~~~  174 (350)
                      ......     .....+++.++....
T Consensus       106 ~~~~~~-----~~~~~~~~~~~~~~~  126 (370)
T d2iida1         106 LNEFSQ-----ENDNAWYFIKNIRKK  126 (370)
T ss_dssp             EEEECS-----CCTTSEEEETTEEEE
T ss_pred             cceeec-----cCCceEEecCCcccc
Confidence            543331     223456677766444

>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: UDP-galactopyranose mutase, N-terminal domain
domain: UDP-galactopyranose mutase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.60  E-value=2.5e-15  Score=137.96  Aligned_cols=199  Identities=15%  Similarity=0.178  Sum_probs=134.5

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEE-ecCCceecCCCCCchHHHHHHHHcCCCCcccccCCC
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIF-EKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSS  157 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~-D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~  157 (350)
                      |++|||+||+   ++|++|+|+|+++++||+++|.. .+|+.+ |.|||+|+...+   .+++++.++.-   +.+    
T Consensus         9 aG~sGl~~A~~L~~~g~~V~iiEk~~~iGG~~~t~~-~~g~~~~~~G~h~f~t~~~---~v~~~~~~~~~---~~~----   77 (298)
T d1i8ta1           9 SGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTED-CEGIQIHKYGAHIFHTNDK---YIWDYVNDLVE---FNR----   77 (298)
T ss_dssp             CSHHHHHHHHHHGGGTCCEEEECSSSSSSGGGCEEE-ETTEEEETTSCCCEEESCH---HHHHHHHTTSC---BCC----
T ss_pred             CcHHHHHHHHHHHhCCCcEEEEECCCCcccceEEeC-cCCEEEeecCcEEEEecch---HHHHHhhcccc---cee----
Confidence            5669999998   56999999999999999999998 588876 889999988765   89999987642   221    


Q ss_pred             CCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHHHHHHHHHhhcCCCCCCCCcHHHHHHHhhChHHHHHHHHHhhhhc
Q psy7666         158 HPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPLIFSILHDLTTKTVPKSDESIYDFVSRRFGSEVADYAVSSMICGI  237 (350)
Q Consensus       158 ~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~Sv~~~l~~~~~~~~~~~~~~pl~~~~  237 (350)
                        .....+.+.+|+..++|..+..+..............++.............++.+|+.+.+|+.+.+.++.|+....
T Consensus        78 --~~~~~~~~~~~~~~~~P~~~~~i~~l~~~~~~~~~~~~i~~~~~~~~~~~~~n~ee~~~~~~G~~lye~ff~~Yt~K~  155 (298)
T d1i8ta1          78 --FTNSPLAIYKDKLFNLPFNMNTFHQMWGVKDPQEAQNIINAQKKKYGDKVPENLEEQAISLVGEDLYQALIKGYTEKQ  155 (298)
T ss_dssp             --CCCCCEEEETTEEEESSBSHHHHHHHHCCCCHHHHHHHHHHHTTTTCCCCCCSHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             --eccccceeeeceeEEecccHHHHHHhhhhhcHHHHHHHHHHHHhhcccccchhHHHHHHHhhchhHHHhcccchhhhc
Confidence              113356678999999997654332211112222222333222222233456789999999999999999999999999


Q ss_pred             ccCCcccccHHHHHHHHHHHHHhccchHHHHHHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhc
Q psy7666         238 CAGDAKKISVNFLMAKLFELEQLHGGVIKGAIKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS  317 (350)
Q Consensus       238 ~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~  317 (350)
                      |+.+++++++..+ ..+        .+ .    .  .        .+.. |    ....-.+.+++|+.++++.|.+.. 
T Consensus       156 Wg~~p~eL~~~~~-~ri--------pi-r----~--~--------~~~~-y----f~d~~q~~pk~Gyt~~~~~~l~~~-  205 (298)
T d1i8ta1         156 WGRSAKELPAFII-KRI--------PV-R----F--T--------FDNN-Y----FSDRYQGIPVGGYTKLIEKMLEGV-  205 (298)
T ss_dssp             HSSCGGGSCTTSS-CCC--------CB-C----S--S--------SCCC-S----CCCSEEECBTTCHHHHHHHHHTTS-
T ss_pred             cccCccccccccc-ccc--------cc-c----c--c--------ccch-h----hhcceEEEEecccchHHHHHhcCC-
Confidence            9999999875332 000        00 0    0  0        0000 0    111124668999999999999864 


Q ss_pred             CCCEEEeCc
Q psy7666         318 NKVEVKMDT  326 (350)
Q Consensus       318 ~g~~I~l~~  326 (350)
                         .|++++
T Consensus       206 ---~i~l~~  211 (298)
T d1i8ta1         206 ---DVKLGI  211 (298)
T ss_dssp             ---EEECSC
T ss_pred             ---ceEecc
Confidence               566654

>d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Lysine-specific histone demethylase 1, LSD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=6.1e-15  Score=133.64  Aligned_cols=73  Identities=19%  Similarity=0.309  Sum_probs=61.5

Q ss_pred             CCCCCCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHc
Q psy7666          73 PFPPDLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDL  145 (350)
Q Consensus        73 ~~~~~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~el  145 (350)
                      |+.++ ++|+||    |||+||+   ++|++|+||||++|+|||++|++ .+|+.+|+|++||++.+  ++.+.+|++++
T Consensus         1 p~~~~-~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~r~GGr~~t~~-~~g~~~d~G~~~i~~~~--~~~~~~l~~~l   76 (449)
T d2dw4a2           1 PTKKT-GKVIIIGSGVSGLAAARQLQSFGMDVTLLEARDRVGGRVATFR-KGNYVADLGAMVVTGLG--GNPMAVVSKQV   76 (449)
T ss_dssp             CSSCC-CEEEEECCBHHHHHHHHHHHHTTCEEEEECSSSSSBTTCCEEE-ETTEEEESSCCEECCSB--TCHHHHHHHHH
T ss_pred             CCCCC-CcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCCCCcccEEEEE-eCCEEEECCCEEECCCC--CcHHHHHHHHc
Confidence            44444 556665    9999998   68999999999999999999999 49999999999997543  23899999999


Q ss_pred             CCCC
Q psy7666         146 GLAD  149 (350)
Q Consensus       146 Gl~~  149 (350)
                      |++.
T Consensus        77 gl~~   80 (449)
T d2dw4a2          77 NMEL   80 (449)
T ss_dssp             TCCE
T ss_pred             CCcc
Confidence            9964

>d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Polyamine oxidase
species: Maize (Zea mays) [TaxId: 4577]

Probab=99.04  E-value=2.5e-11  Score=105.31  Aligned_cols=49  Identities=14%  Similarity=0.249  Sum_probs=43.2

Q ss_pred             hhhHhHhhh---cCCC-CEEEEecCCCCCcceEEEecCCCeEEecCCceecCCC
Q psy7666          83 VIRILCTVL---RIST-PITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKG  132 (350)
Q Consensus        83 viaGLaaA~---~~G~-~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~  132 (350)
                      ++|||+||+   ++|+ +|+|||+++++|||++|++ .+|+.+|+|+++++..+
T Consensus         9 G~aGL~aA~~L~~~G~~~V~vlE~~~~~GG~~~t~~-~~g~~~d~G~~~~~~~~   61 (347)
T d1b5qa1           9 GMSGISAAKRLSEAGITDLLILEATDHIGGRMHKTN-FAGINVELGANWVEGVN   61 (347)
T ss_dssp             BHHHHHHHHHHHHTTCCCEEEECSSSSSBTTSCEEE-ETTEEEESSCCEEEEES
T ss_pred             cHHHHHHHHHHHhCCCCcEEEEECCCCCCceEEEec-cCCEEEecCCeEEeccc
Confidence            349999998   6895 7999999999999999999 59999999999996443

>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: GDI-like N domain
domain: Rab escort protein 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=1.7e-06  Score=82.78  Aligned_cols=188  Identities=7%  Similarity=0.039  Sum_probs=116.0

Q ss_pred             eEEecCCceecCCCCCchHHHHHHHHcCCCCcccccCCCCCCCcceEEEeCCeEEECCCChhhhcccCCCCCHHH---HH
Q psy7666         119 LIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVIPITSSHPTAQNRLIYVNKKLHKLPSNFFSLFKTHSPFSKPL---IF  195 (350)
Q Consensus       119 ~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~~~~~~~p~~~~~~i~~~g~~~~~p~~~~~~~~~~~~l~~~~---~~  195 (350)
                      |.+|+.|..++...    .+.+++-+-++...+.+..    - ...|+|.+|+++.+|.+-.++++. ..++.-+   ++
T Consensus       222 ~niDL~Pk~l~a~g----~lv~~Li~S~v~rYlEFk~----v-~~~~v~~~g~~~~VP~sr~eif~s-~~l~l~eKR~lm  291 (491)
T d1vg0a1         222 FNIDLVSKLLYSRG----LLIDLLIKSNVSRYAEFKN----I-TRILAFREGTVEQVPCSRADVFNS-KQLTMVEKRMLM  291 (491)
T ss_dssp             CCEESSCCCEESSS----HHHHHHHHHTGGGGCCEEE----C-CEEEEESSSSEEECCCSHHHHHHC-SSSCHHHHHHHH
T ss_pred             ccccccchheeccc----HHHHHHHHcChhhheeEEE----e-ceEEEecCCeEEECCCCHHHHhcC-CCCCHHHHHHHH
Confidence            55778888777654    5777777777755433321    1 357888999999999886666654 3444333   33


Q ss_pred             HHHHHhh---cC---CCCCCCCcHHHHHHHh-hChHHHHHHHHHhhhhcccCCcccccHHHHHHHHHHHHHhccchHHHH
Q psy7666         196 SILHDLT---TK---TVPKSDESIYDFVSRR-FGSEVADYAVSSMICGICAGDAKKISVNFLMAKLFELEQLHGGVIKGA  268 (350)
Q Consensus       196 ~~l~~~~---~~---~~~~~~~Sv~~~l~~~-~~~~~~~~~~~pl~~~~~~~~~~~lS~~~~l~~~~~~~~~~gs~l~g~  268 (350)
                      +++....   ..   +...++.++.+|++.. +.+...+.+...+.  ++..  +.....-++..+..+..+.+.     
T Consensus       292 kFl~~v~~~~~~~~~~~~~~~~~~~e~l~~~~l~~~~~~~i~~aia--l~~~--~~~~~~~~l~ri~~yl~Slg~-----  362 (491)
T d1vg0a1         292 KFLTFCVEYEEHPDEYRAYEGTTFSEYLKTQKLTPNLQYFVLHSIA--MTSE--TTSCTVDGLKATKKFLQCLGR-----  362 (491)
T ss_dssp             HHHHHHHTGGGCHHHHHTTTTSBHHHHHTTSSSCHHHHHHHHHHTT--C--C--CSCBHHHHHHHHHHHHHHTTS-----
T ss_pred             HHHHHHhhccCCccccccccCCcHHHHHHHcCCChHHHHHHHhhee--ccCC--CCccHHHHHHHHHHHHHHHHh-----
Confidence            3333221   11   1235678999999864 56666665544332  2222  222333444444433221110     


Q ss_pred             HHHhhhcCCCCCCcchhHHHHhhhcccceEEEecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC--eE-EEEeCC
Q psy7666         269 IKEMMSKRPDLSGYEESELYRRSRIEKWSVWSVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK--GV-KAVDQP  344 (350)
Q Consensus       269 ~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~--gv-~V~~~~  344 (350)
                                              .....+.++..|++-|++++++... -|+...||++|..|..+.+  .+ .|...+
T Consensus       363 ------------------------yG~spflyp~YG~gEipQ~FcR~~AV~Gg~Y~L~~~i~~i~~d~e~~~~~~v~~~~  418 (491)
T d1vg0a1         363 ------------------------YGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQF  418 (491)
T ss_dssp             ------------------------SSSSSEEEETTCTTHHHHHHHHHHHHTTCEEESSCCEEEEEEETTTCCEEEEEETT
T ss_pred             ------------------------hCCCCeEeecCCcchHHHHHHHHHHhcCcEEEcCCccceEEEecCCCeEEEEEccC
Confidence                                    1122478899999999999999888 8999999999999998632  34 567788


Q ss_pred             Cceec
Q psy7666         345 IHQMT  349 (350)
Q Consensus       345 G~~~~  349 (350)
                      |+++.
T Consensus       419 g~~i~  423 (491)
T d1vg0a1         419 GQRII  423 (491)
T ss_dssp             SCEEE
T ss_pred             CcEEe
Confidence            88764

>d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: 2,4-dienoyl-CoA reductase, middle domain
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=1e-05  Score=67.36  Aligned_cols=35  Identities=23%  Similarity=0.276  Sum_probs=31.0

Q ss_pred             Cceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          78 LLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        78 ~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .++|+||    |||+||+   ++|++|+|||+.+++||.++.
T Consensus        43 ~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~~~GG~l~~   84 (179)
T d1ps9a3          43 KKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHSEIGGQFNI   84 (179)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSSSCTTHHH
T ss_pred             CcEEEEECccHHHHHHHHHHHhhccceEEEeccCccCceEEE
Confidence            3788888    9999998   689999999999999998763

>d1lqta2 c.4.1.1 (A:2-108,A:325-456) Ferredoxin:NADP reductase FprA {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Ferredoxin:NADP reductase FprA
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.06  E-value=4.2e-05  Score=65.19  Aligned_cols=33  Identities=15%  Similarity=0.285  Sum_probs=27.7

Q ss_pred             ceeehh----hHhHhhh---cCC-------CCEEEEecCCCCCcceE
Q psy7666          79 LLLLVI----RILCTVL---RIS-------TPITLLESSSRLGGWVR  111 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G-------~~VtVlEa~drvGGRi~  111 (350)
                      .+||||    |||+||+   ++|       ++|+|||+.+++||.++
T Consensus         3 ~~VaVIGaGpaGL~aA~~L~~~G~~~~~~~~~V~v~E~~~~~GG~~~   49 (239)
T d1lqta2           3 YYIAIVGSGPSAFFAAASLLKAADTTEDLDMAVDMLEMLPTPWGLVR   49 (239)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHHHHHSTTCCEEEEEEESSSSCSTHHH
T ss_pred             cEEEEECcCHHHHHHHHHHHHcCCccccCCCceEEEecCCCCCCeee
Confidence            468887    9999997   345       68999999999999764

>d1cjca2 c.4.1.1 (A:6-106,A:332-460) Adrenodoxin reductase of mitochondrial p450 systems {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Adrenodoxin reductase of mitochondrial p450 systems
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.95  E-value=0.00014  Score=61.93  Aligned_cols=34  Identities=18%  Similarity=0.109  Sum_probs=28.4

Q ss_pred             ceeehh----hHhHhhh---c--CCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---R--ISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~--~G~~VtVlEa~drvGGRi~T  112 (350)
                      ++||||    |||+||.   +  .|++|+|||+.+++||.++.
T Consensus         2 ~kv~iIGaGpaGl~aA~~L~~~~~~~~V~v~e~~~~~gG~~~~   44 (230)
T d1cjca2           2 PQICVVGSGPAGFYTAQHLLKHHSRAHVDIYEKQLVPFGLVRF   44 (230)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHHCSSCEEEEECSSSSSCTHHHH
T ss_pred             CeEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCceehh
Confidence            468777    9999995   2  38999999999999998653

>d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Trimethylamine dehydrogenase, middle domain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.86  E-value=0.00024  Score=60.74  Aligned_cols=38  Identities=13%  Similarity=0.232  Sum_probs=31.8

Q ss_pred             CCceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEe
Q psy7666          77 DLLLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQ  114 (350)
Q Consensus        77 ~~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~  114 (350)
                      +.++|+||    |||+||.   ++|++|+|+|+++++||.+....
T Consensus        48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~GG~~~~~~   92 (233)
T d1djqa3          48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKIGGHLNQVA   92 (233)
T ss_dssp             SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTTHHHHT
T ss_pred             CCceEEEEcccHHHHHHHHHHHHhccceeeEeeccccCCcccccc
Confidence            34677777    9999997   68999999999999999876543

>d1gtea4 c.4.1.1 (A:184-287,A:441-532) Dihydropyrimidine dehydrogenase, domain 2 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: N-terminal domain of adrenodoxin reductase-like
domain: Dihydropyrimidine dehydrogenase, domain 2
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.78  E-value=0.00029  Score=57.91  Aligned_cols=34  Identities=21%  Similarity=0.345  Sum_probs=28.7

Q ss_pred             ceeehh----hHhHhhh---cCCC-CEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL---RIST-PITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~-~VtVlEa~drvGGRi~T  112 (350)
                      +|||||    +||+||.   ++|+ +|+|||+++++||....
T Consensus         5 ~kVaIIGaGpaGl~aA~~l~~~G~~~V~v~E~~~~~gg~~~~   46 (196)
T d1gtea4           5 AKIALLGAGPASISCASFLARLGYSDITIFEKQEYVGGLSTS   46 (196)
T ss_dssp             CCEEEECCSHHHHHHHHHHHHTTCCCEEEEESSSSCSTHHHH
T ss_pred             CEEEEECChHHHHHHHHHHHHCCCCeEEEEEecCcccchhhh
Confidence            668777    9999997   6898 59999999999997543

>d2gv8a1 c.3.1.5 (A:3-180,A:288-444) Flavin-dependent monoxygenase SPBP16F5.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Flavin-dependent monoxygenase SPBP16F5.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=96.66  E-value=0.00033  Score=63.08  Aligned_cols=35  Identities=23%  Similarity=0.218  Sum_probs=28.2

Q ss_pred             Cceeehh----hHhHhhh---cCC--CCEEEEecCCCCCcceEE
Q psy7666          78 LLLLLVI----RILCTVL---RIS--TPITLLESSSRLGGWVRS  112 (350)
Q Consensus        78 ~~~v~vi----aGLaaA~---~~G--~~VtVlEa~drvGGRi~T  112 (350)
                      .|+||||    |||+||.   +.|  ++|+|||+++.+||..+.
T Consensus         4 ~KrVaIIGaG~sGl~~A~~L~~~~~~~~v~vfEk~~~iGG~W~~   47 (335)
T d2gv8a1           4 IRKIAIIGAGPSGLVTAKALLAEKAFDQVTLFERRGSPGGVWNY   47 (335)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHTTTCCSEEEEECSSSSSSTTCSC
T ss_pred             CCeEEEECcCHHHHHHHHHHHHhCCCCCEEEEECCCCCCCcccc
Confidence            4678877    9999985   334  799999999999997543

>d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Dihydroxypyridine hydroxylase DhpH
species: Arthrobacter nicotinovorans [TaxId: 29320]

Probab=96.47  E-value=0.00068  Score=58.05  Aligned_cols=29  Identities=17%  Similarity=0.114  Sum_probs=24.2

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCC
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      +||+||    +||+||.   ++|++|+|||+++.++
T Consensus         5 ~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~~~~~   40 (265)
T d2voua1           5 DRIAVVGGSISGLTAALMLRDAGVDVDVYERSPQPL   40 (265)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSC
T ss_pred             CcEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCC
Confidence            567666    9999997   6899999999987754

>d1w4xa1 c.3.1.5 (A:10-154,A:390-542) Phenylacetone monooxygenase {Thermobifida fusca [TaxId: 2021]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Phenylacetone monooxygenase
species: Thermobifida fusca [TaxId: 2021]

Probab=96.23  E-value=0.001  Score=59.17  Aligned_cols=44  Identities=16%  Similarity=0.244  Sum_probs=32.0

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEec
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEK  123 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~  123 (350)
                      .+|+||    |||++|.   ++|.+|+|||+++.+||..+.-+ ..|..+|.
T Consensus         8 ~dV~IIGAG~sGl~~a~~L~~~G~~v~i~Ek~~~iGGtW~~n~-ypg~~~d~   58 (298)
T d1w4xa1           8 VDVLVVGAGFSGLYALYRLRELGRSVHVIETAGDVGGVWYWNR-YPGARCDI   58 (298)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCEEEECSSSSSCTHHHHCC-CTTCBCSS
T ss_pred             CCEEEECccHHHHHHHHHHHhCCCCEEEEEcCCCcccccccCC-CCCceecc
Confidence            446655    9999987   68999999999999999653323 24444443

>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.94  E-value=0.0014  Score=55.08  Aligned_cols=32  Identities=16%  Similarity=0.263  Sum_probs=27.4

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      .|+||    |||+||.   ++|.+|+|+|+++++||.+.
T Consensus         7 DviVIG~GpAGl~aA~~aa~~G~kV~lie~~~~~GG~~~   45 (233)
T d1v59a1           7 DVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGTCL   45 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSHHHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCcceEeE
Confidence            36666    9999987   68999999999999999764

>d1rp0a1 c.3.1.6 (A:7-284) Thiazole biosynthetic enzyme Thi4 {Thale cress(Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Thale cress(Arabidopsis thaliana) [TaxId: 3702]

Probab=95.92  E-value=0.0013  Score=57.53  Aligned_cols=33  Identities=18%  Similarity=0.244  Sum_probs=27.1

Q ss_pred             eeehh----hHhHhhh---c-CCCCEEEEecCCCCCcceEE
Q psy7666          80 LLLVI----RILCTVL---R-ISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~-~G~~VtVlEa~drvGGRi~T  112 (350)
                      .|+||    |||+||.   + +|++|+|+|+++++||.+++
T Consensus        35 DViVIGaGpaGL~aA~~LA~~~G~~V~vlE~~~~~GG~~~~   75 (278)
T d1rp0a1          35 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWL   75 (278)
T ss_dssp             EEEEECCSHHHHHHHHHHHTSTTSCEEEEESSSSCCTTTTC
T ss_pred             CEEEECCCHHHHHHHHHHHHccCCeEEEEecCCCCCCceee
Confidence            35555    9999986   3 59999999999999998754

>d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Rhodotorula gracilis [TaxId: 5286]

Probab=95.80  E-value=0.0027  Score=53.56  Aligned_cols=29  Identities=17%  Similarity=0.170  Sum_probs=23.2

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      ++|+||    +||++|+   ++|++|+|+|+.. +|+
T Consensus         7 ~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~~-~~~   42 (268)
T d1c0pa1           7 KRVVVLGSGVIGLSSALILARKGYSVHILARDL-PED   42 (268)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC-TTC
T ss_pred             CcEEEECccHHHHHHHHHHHHCCCCEEEEeCCC-CCC
Confidence            566665    9999998   6899999999865 443

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=95.56  E-value=0.0022  Score=54.50  Aligned_cols=48  Identities=17%  Similarity=0.231  Sum_probs=39.6

Q ss_pred             CcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE-EEEeCCCceecC
Q psy7666         303 GGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV-KAVDQPIHQMTK  350 (350)
Q Consensus       303 GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv-~V~~~~G~~~~~  350 (350)
                      .....+.+.|.+.+. .|++|+++++|++|..+++.+ .|..++|+++++
T Consensus       107 ~~~~~i~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~a  156 (251)
T d2i0za1         107 NKAQSVVDALLTRLKDLGVKIRTNTPVETIEYENGQTKAVILQTGEVLET  156 (251)
T ss_dssp             CCHHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTCCEEEC
T ss_pred             ccHHHHHHHHHHHHHHcCCcccCCcEEEEEEEECCEEEEEEeCCCCeEec
Confidence            345668888888887 889999999999999988875 488889987753

>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=95.44  E-value=0.0023  Score=53.23  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=26.9

Q ss_pred             eehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          81 LLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      |+||    |||+||.   ++|.+|+|+|+++++||.+.
T Consensus         6 vvVIGgGpaGl~aA~~aa~~G~kV~vie~~~~~GG~~~   43 (221)
T d1dxla1           6 VVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGTCL   43 (221)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECSSSSCCSHH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCCeee
Confidence            6666    9999997   67999999999999999764

>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Hypothetical protein HI0933
species: Haemophilus influenzae [TaxId: 727]

Probab=95.36  E-value=0.0028  Score=54.35  Aligned_cols=38  Identities=13%  Similarity=0.264  Sum_probs=27.5

Q ss_pred             EecCcHHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe
Q psy7666         300 SVEGGLQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG  337 (350)
Q Consensus       300 ~~~GG~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g  337 (350)
                      .+......+.+.|.+.+. .|++|+++++|++|+..+++
T Consensus       103 ~~~~~a~~i~~~L~~~~~~~gV~i~~~~~V~~i~~~~~~  141 (253)
T d2gqfa1         103 FCDEGAEQIVEMLKSECDKYGAKILLRSEVSQVERIQND  141 (253)
T ss_dssp             EETTCTHHHHHHHHHHHHHHTCEEECSCCEEEEEECCSC
T ss_pred             ccccchhHHHHHHHHHHHHcCCCeecCceEEEEEeecCC
Confidence            345555667777777776 67888888888888876553

>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=94.79  E-value=0.0066  Score=50.95  Aligned_cols=32  Identities=16%  Similarity=0.217  Sum_probs=27.1

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      .|+||    |||+||.   ++|.+|+|+|+.+.+||.+-
T Consensus         8 DviIIG~GPaGlsaA~~aa~~G~~V~viE~~~~~GG~~~   46 (229)
T d1ojta1           8 DVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCL   46 (229)
T ss_dssp             EEEEECCSHHHHHHHHHHHHTTCCEEEEESSSCSSHHHH
T ss_pred             CEEEECcCHHHHHHHHHHHHCCCeEEEEeccCCCCCeee
Confidence            36666    9999997   68999999999999999643

>d2gjca1 c.3.1.6 (A:16-326) Thiazole biosynthetic enzyme Thi4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Thi4-like
domain: Thiazole biosynthetic enzyme Thi4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.74  E-value=0.0058  Score=54.02  Aligned_cols=34  Identities=21%  Similarity=0.220  Sum_probs=28.0

Q ss_pred             ceeehh----hHhHhhh-----cCCCCEEEEecCCCCCcceEE
Q psy7666          79 LLLLVI----RILCTVL-----RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        79 ~~v~vi----aGLaaA~-----~~G~~VtVlEa~drvGGRi~T  112 (350)
                      .+|+||    |||+||+     ++|++|+|+|+.+.+||+++.
T Consensus        51 ~~~~~~g~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (311)
T d2gjca1          51 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWL   93 (311)
T ss_dssp             ESEEEECCSHHHHHHHHHHHHHCTTSCEEEECSSSSCCTTTTC
T ss_pred             CCEEEECCCHHHHHHHHHHHHhCCCCeEEEEEcCCCCcceeEe
Confidence            346666    9999996     259999999999999998753

>d1m6ia2 c.3.1.5 (A:264-400) Apoptosis-inducing factor (AIF) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Apoptosis-inducing factor (AIF)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.51  E-value=0.031  Score=43.08  Aligned_cols=42  Identities=10%  Similarity=0.005  Sum_probs=36.4

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCceec
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQMT  349 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~~~  349 (350)
                      +.+.+.+.+. .|+++++|+.|++|+.+++++.|++.+|+++.
T Consensus        85 ~~~~~~~~l~~~GV~~~~~~~V~~i~~~~~~~~v~l~~G~~i~  127 (137)
T d1m6ia2          85 LSNWTMEKVRREGVKVMPNAIVQSVGVSSGKLLIKLKDGRKVE  127 (137)
T ss_dssp             HHHHHHHHHHTTTCEEECSCCEEEEEEETTEEEEEETTSCEEE
T ss_pred             HHHHHHHHHHhCCcEEEeCCEEEEEEecCCEEEEEECCCCEEE
Confidence            5556667777 89999999999999999999999999998764

>d1aoga2 c.3.1.5 (A:170-286) Trypanothione reductase {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Trypanosoma cruzi [TaxId: 5693]

Probab=93.97  E-value=0.043  Score=40.96  Aligned_cols=44  Identities=14%  Similarity=0.203  Sum_probs=36.7

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEEeCCCceec
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAVDQPIHQMT  349 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~~~~G~~~~  349 (350)
                      ..+.+.+.+.+. .|++|++|+.|++|+.+++ .+.|++++|++++
T Consensus        64 ~~~~~~l~~~l~~~GV~v~~~~~v~~ie~~~~~~~~v~~~~G~~i~  109 (117)
T d1aoga2          64 HTLREELTKQLTANGIQILTKENPAKVELNADGSKSVTFESGKKMD  109 (117)
T ss_dssp             HHHHHHHHHHHHHTTCEEEESCCEEEEEECTTSCEEEEETTSCEEE
T ss_pred             hHHHHHHHHHHHhcCcEEEcCCEEEEEEEcCCCeEEEEECCCcEEE
Confidence            446777777887 8999999999999998755 5889999998765

>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=93.89  E-value=0.013  Score=51.29  Aligned_cols=43  Identities=14%  Similarity=0.133  Sum_probs=31.6

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe----EEEEeCCCce
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG----VKAVDQPIHQ  347 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g----v~V~~~~G~~  347 (350)
                      ...++..+.+.+. .|++|+++++|+++..++++    |.+...++..
T Consensus       144 ~~~~~~~l~~~a~~~gv~i~~~~~v~~li~~~~G~V~Gv~~~~~~~~~  191 (308)
T d1y0pa2         144 GAHVVQVLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGY  191 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEE
T ss_pred             HHHHHHHHHHHHHhccceEEEeeccchhhhhcccccccccccccccce
Confidence            3457778877777 78999999999999887653    4555555543

>d3c96a1 c.3.1.2 (A:4-182,A:294-402) Monooxygenase PhzS {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Monooxygenase PhzS
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.83  E-value=0.015  Score=49.35  Aligned_cols=31  Identities=32%  Similarity=0.364  Sum_probs=24.1

Q ss_pred             ceeehh----hHhHhhh---cCCC-CEEEEecCCCCCcc
Q psy7666          79 LLLLVI----RILCTVL---RIST-PITLLESSSRLGGW  109 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~-~VtVlEa~drvGGR  109 (350)
                      .+|+||    |||++|.   ++|. +|+|+|+++.++..
T Consensus         2 ~~V~IvGaG~aGl~~A~~L~~~Gi~~V~V~Er~~~~~~~   40 (288)
T d3c96a1           2 IDILIAGAGIGGLSCALALHQAGIGKVTLLESSSEIRPL   40 (288)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCSEEEEEESSSSCCCC
T ss_pred             CEEEEECcCHHHHHHHHHHHhCCCCeEEEEeCCCCCCCC
Confidence            345554    9999997   6895 99999999887643

>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=93.75  E-value=0.013  Score=48.46  Aligned_cols=29  Identities=21%  Similarity=0.334  Sum_probs=24.3

Q ss_pred             eehh----hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          81 LLVI----RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      |+||    |||+||.   ++|.+|+|+|+ +.+||.+
T Consensus         5 vvVIG~G~aG~~aA~~a~~~G~kV~iiE~-~~~GGtc   40 (217)
T d1gesa1           5 YIAIGGGSGGIASINRAAMYGQKCALIEA-KELGGTC   40 (217)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEEES-SCTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEec-cCcCCeE
Confidence            5666    9999987   67999999998 5799964

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=93.70  E-value=0.037  Score=47.30  Aligned_cols=50  Identities=12%  Similarity=0.175  Sum_probs=41.5

Q ss_pred             EEEecCcH---HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCce
Q psy7666         298 VWSVEGGL---QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQ  347 (350)
Q Consensus       298 ~~~~~GG~---~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~  347 (350)
                      .+.+.+|.   ..+..+|++.+. .|++|+++++|++|+.++++|.|.+.+|..
T Consensus       139 ~~~~~~g~~~p~~~~~~l~~~a~~~Gv~i~~~~~V~~i~~~~~~v~V~t~~g~i  192 (281)
T d2gf3a1         139 IFEPNSGVLFSENCIRAYRELAEARGAKVLTHTRVEDFDISPDSVKIETANGSY  192 (281)
T ss_dssp             EEETTCEEEEHHHHHHHHHHHHHHTTCEEECSCCEEEEEECSSCEEEEETTEEE
T ss_pred             eeccccccccccccccccccccccccccccCCcEEEEEEEECCEEEEEECCcEE
Confidence            34455553   568888888888 899999999999999999999999998864

>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella putrefaciens [TaxId: 24]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella putrefaciens [TaxId: 24]

Probab=93.69  E-value=0.015  Score=51.31  Aligned_cols=43  Identities=7%  Similarity=0.068  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCC----eEEEEeCCCce
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK----GVKAVDQPIHQ  347 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~----gv~V~~~~G~~  347 (350)
                      ...+.+.|.+.+. .|++|+++++|++|..+++    ||.+...++..
T Consensus       151 ~~~~~~~l~~~a~~~gv~i~~~t~v~~li~d~~G~V~Gv~~~~~~~~~  198 (322)
T d1d4ca2         151 GAHVAQVLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGY  198 (322)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTEEEEEEECCSSSCCCEEEEEETTTEE
T ss_pred             hHHHHHHHHHHHHhcCceEEEeeecccccccccccccceEEEeecccE
Confidence            3457788888777 8899999999999988654    35566555543

>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: HI0933 N-terminal domain-like
domain: Flavoprotein BC4706
species: Bacillus cereus [TaxId: 1396]

Probab=93.08  E-value=0.12  Score=42.93  Aligned_cols=29  Identities=17%  Similarity=0.162  Sum_probs=25.1

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      +++|||+||.   ++|++|+|+|+++.+||++
T Consensus        10 aG~aGl~aA~~la~~G~~V~liEk~~~~g~~~   41 (251)
T d2i0za1          10 GGPSGLMAAIGAAEEGANVLLLDKGNKLGRKL   41 (251)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSSSSCHHH
T ss_pred             cCHHHHHHHHHHHHCCCcEEEEeCCCCCCcce
Confidence            3459999997   6899999999999999874

>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Electron transfer flavoprotein-ubiquinone oxidoreductase, EFT-QO
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.04  E-value=0.018  Score=52.46  Aligned_cols=31  Identities=13%  Similarity=0.280  Sum_probs=25.1

Q ss_pred             eeehh----hHhHhhh---c------CCCCEEEEecCCCCCcce
Q psy7666          80 LLLVI----RILCTVL---R------ISTPITLLESSSRLGGWV  110 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~------~G~~VtVlEa~drvGGRi  110 (350)
                      .|+||    |||+||+   +      +|++|+|+|+.+.+|..+
T Consensus        34 DViIVGgGPAGlsaA~~LA~l~~~~~~Gl~VlllEK~~~pG~k~   77 (380)
T d2gmha1          34 DVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHT   77 (380)
T ss_dssp             SEEEECCSHHHHHHHHHHHHHHHHTTCCCCEEEECSSSSTTTTC
T ss_pred             CEEEECCCHHHHHHHHHHHhhhhhhcCCCEEEEEcCCCCCCCCc
Confidence            35555    9999997   3      799999999999987654

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=92.99  E-value=0.023  Score=48.39  Aligned_cols=43  Identities=7%  Similarity=-0.119  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCCce
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPIHQ  347 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G~~  347 (350)
                      ...+...|++.+. .|++|+.+++|+.|+.+++.+.|.+.+|..
T Consensus       150 ~~~~~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~~~V~t~~g~i  193 (276)
T d1ryia1         150 PYFVCKAYVKAAKMLGAEIFEHTPVLHVERDGEALFIKTPSGDV  193 (276)
T ss_dssp             HHHHHHHHHHHHHHTTCEEETTCCCCEEECSSSSEEEEETTEEE
T ss_pred             cccchhHHHHHHHHcCCEEecceEEEeEEeecceEEEecCCeEE
Confidence            4568888888887 899999999999999988889999988854

>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3 (respiratory fumarate reductase) {Shewanella frigidimarina [TaxId: 56812]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Flavocytochrome c3 (respiratory fumarate reductase)
species: Shewanella frigidimarina [TaxId: 56812]

Probab=92.98  E-value=0.018  Score=50.77  Aligned_cols=42  Identities=12%  Similarity=0.250  Sum_probs=32.3

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCC----eEEEEeCCCcee
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK----GVKAVDQPIHQM  348 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~----gv~V~~~~G~~~  348 (350)
                      .++++|.+.+. .|++|+++++|+++..+++    ||.+...++.++
T Consensus       149 ~i~~~L~~~~~~~g~~i~~~~~v~~l~~~~~g~V~Gv~~~~~~~~~~  195 (317)
T d1qo8a2         149 EIIDTLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYY  195 (317)
T ss_dssp             HHHHHHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEE
T ss_pred             hhhHHHHHHhhhccceeeeccchhheeecccccceeeEeecccceEE
Confidence            48888888887 8899999999999987655    255666666543

>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus sp., strain b0618 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Sarcosine oxidase
species: Bacillus sp., strain b0618 [TaxId: 1409]

Probab=92.46  E-value=0.031  Score=47.83  Aligned_cols=30  Identities=3%  Similarity=-0.204  Sum_probs=24.5

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcceE
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWVR  111 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi~  111 (350)
                      ++|+||++|+   ++|++|+|+|+.+..|+...
T Consensus        11 aGi~Gls~A~~La~~G~~V~viE~~~~~~~~~s   43 (281)
T d2gf3a1          11 AGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGS   43 (281)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSCSSCSSSS
T ss_pred             cCHHHHHHHHHHHHCCCcEEEEeCCCCCCcccc
Confidence            5569999998   68999999999887765543

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=92.29  E-value=0.11  Score=38.73  Aligned_cols=42  Identities=7%  Similarity=0.141  Sum_probs=35.2

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEEeCCCcee
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAVDQPIHQM  348 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~~~~G~~~  348 (350)
                      .+.+.+.+.+. .|+++++++.|++|+..++ .+.|++.+|+++
T Consensus        64 ~~~~~~~~~l~~~gV~i~~~~~v~~i~~~~~~~~~v~~~~G~~~  107 (117)
T d1onfa2          64 SVINVLENDMKKNNINIVTFADVVEIKKVSDKNLSIHLSDGRIY  107 (117)
T ss_dssp             HHHHHHHHHHHHTTCEEECSCCEEEEEESSTTCEEEEETTSCEE
T ss_pred             HHHHHHHHHHHhCCCEEEECCEEEEEEEcCCCeEEEEECCCCEE
Confidence            36677777777 8999999999999998765 588999999875

>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Escherichia coli [TaxId: 562]

Probab=91.88  E-value=0.026  Score=45.66  Aligned_cols=36  Identities=14%  Similarity=0.182  Sum_probs=27.9

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEe
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQ  114 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~  114 (350)
                      ++|+||    +||+||.   ++|.+|+|+|+.++.|....+..
T Consensus         6 ~dVvIIGGGpaGl~AA~~~ar~g~~v~iie~~~~~g~~~~~~~   48 (190)
T d1trba1           6 SKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTE   48 (190)
T ss_dssp             EEEEEECCSHHHHHHHHHHHTTTCCCEEECCSSTTGGGGGCSB
T ss_pred             CcEEEECCCHHHHHHHHHHHHcCCceEEEEeecccccccccch
Confidence            457777    9999997   78999999998777555555433

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=91.70  E-value=0.12  Score=38.39  Aligned_cols=42  Identities=12%  Similarity=0.001  Sum_probs=34.3

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCC-eEEEEeCCCceec
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEK-GVKAVDQPIHQMT  349 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~-gv~V~~~~G~~~~  349 (350)
                      +.+.+.+.+. .|+++++++.|++|..+++ .+.|+.++|++++
T Consensus        64 ~~~~~~~~l~~~GV~~~~~~~v~~i~~~~~~~~~v~~~~g~~~~  107 (116)
T d1gesa2          64 ISETLVEVMNAEGPQLHTNAIPKAVVKNTDGSLTLELEDGRSET  107 (116)
T ss_dssp             HHHHHHHHHHHHSCEEECSCCEEEEEECTTSCEEEEETTSCEEE
T ss_pred             hHHHHHHHHHHCCCEEEeCCEEEEEEEcCCcEEEEEECCCCEEE
Confidence            5566666666 7899999999999998866 4889999998764

>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Wolinella succinogenes [TaxId: 844]

Probab=91.15  E-value=0.04  Score=48.37  Aligned_cols=43  Identities=7%  Similarity=-0.048  Sum_probs=31.9

Q ss_pred             HHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE---EEE-eCCCcee
Q psy7666         306 QTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV---KAV-DQPIHQM  348 (350)
Q Consensus       306 ~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv---~V~-~~~G~~~  348 (350)
                      ..+..+|++.+. .|++|+.+++|.++..+++++   .+. ..+|+.+
T Consensus       158 ~~i~~~l~~~~~~~gv~i~~~~~~~~li~~~~~v~g~~~~~~~~g~~~  205 (336)
T d2bs2a2         158 HTMLFAVANECLKLGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDII  205 (336)
T ss_dssp             HHHHHHHHHHHHHHTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             HHHHHHHHHHHHhccccccceeeeeecccccccccceeEEeccCCcEE
Confidence            347778888877 789999999999999888753   333 3566654

>d1feca2 c.3.1.5 (A:170-286) Trypanothione reductase {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Trypanothione reductase
species: Crithidia fasciculata [TaxId: 5656]

Probab=90.90  E-value=0.17  Score=37.32  Aligned_cols=43  Identities=16%  Similarity=0.174  Sum_probs=35.2

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCe-EEEEeCCCceec
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG-VKAVDQPIHQMT  349 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g-v~V~~~~G~~~~  349 (350)
                      .+.+.+.+.+. .|++|++|+.|++|..++++ ..|+..+|+++.
T Consensus        63 ~~~~~~~~~l~~~GI~v~~~~~v~~i~~~~~g~~~v~~~~g~~i~  107 (117)
T d1feca2          63 ELRKQLTEQLRANGINVRTHENPAKVTKNADGTRHVVFESGAEAD  107 (117)
T ss_dssp             HHHHHHHHHHHHTTEEEEETCCEEEEEECTTSCEEEEETTSCEEE
T ss_pred             hhhHHHHHHHhhCcEEEEcCCEEEEEEECCCCEEEEEECCCCEEE
Confidence            36677777777 89999999999999987665 578999998764

>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=90.86  E-value=0.045  Score=44.83  Aligned_cols=29  Identities=24%  Similarity=0.466  Sum_probs=23.6

Q ss_pred             eehh----hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          81 LLVI----RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      |+||    |||+||.   +.|.+|+|+|+. .+||.+
T Consensus         6 viVIG~GpaGl~aA~~aar~G~kV~vIEk~-~~GG~~   41 (223)
T d1ebda1           6 TLVVGAGPGGYVAAIRAAQLGQKVTIVEKG-NLGGVC   41 (223)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEESS-CTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCEEEEEecC-CCCcce
Confidence            5566    9999987   689999999984 678864

>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.85  E-value=0.044  Score=44.93  Aligned_cols=29  Identities=17%  Similarity=0.240  Sum_probs=23.9

Q ss_pred             eehh----hHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          81 LLVI----RILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      |+||    |||+||.   ++|.+|+|+|+....||+
T Consensus         6 viIIGgGpAGl~aA~~aar~G~~V~viE~~~~~~~~   41 (229)
T d3lada1           6 VIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGK   41 (229)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEEECCBCTTSS
T ss_pred             EEEECcCHHHHHHHHHHHHCCCeEEEEecccCCCcc
Confidence            6666    9999998   679999999997766554

>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=90.74  E-value=0.045  Score=46.54  Aligned_cols=29  Identities=38%  Similarity=0.549  Sum_probs=24.2

Q ss_pred             eehh----hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          81 LLVI----RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      |+||    ||++||.   ++|.+|.|+|+ +.+||.+
T Consensus         4 viVIG~G~aG~~aA~~aa~~G~~V~liE~-~~~GGtc   39 (259)
T d1onfa1           4 LIVIGGGSGGMAAARRAARHNAKVALVEK-SRLGGTC   39 (259)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCCEEEEES-SSTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEec-CCCCCeE
Confidence            5555    8999987   67999999997 6799975

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=90.63  E-value=0.07  Score=46.01  Aligned_cols=42  Identities=19%  Similarity=0.013  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeE-EEEeCCCc
Q psy7666         305 LQTIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGV-KAVDQPIH  346 (350)
Q Consensus       305 ~~~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv-~V~~~~G~  346 (350)
                      ...+..++++.+. .|++|+.+++|++|..+++++ .|.+.+|.
T Consensus       147 p~~l~~~l~~~a~~~gv~i~~~~~V~~i~~~~~~v~~V~T~~g~  190 (305)
T d1pj5a2         147 AARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADGV  190 (305)
T ss_dssp             HHHHHHHHHHHHHHTTCEEECSCCEEEEEEETTEEEEEEETTEE
T ss_pred             hhhhhhhHHhhhhcccccccCCceEEEEEEeCCEEEEEecccee
Confidence            3457788888877 899999999999999999985 48887774

>d1fl2a1 c.3.1.5 (A:212-325,A:452-521) Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Alkyl hydroperoxide reductase subunit F (AhpF), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=90.59  E-value=0.064  Score=42.59  Aligned_cols=30  Identities=20%  Similarity=0.382  Sum_probs=24.5

Q ss_pred             eehh----hHhHhhh---cCCCCEEEEecCCCCCcceEE
Q psy7666          81 LLVI----RILCTVL---RISTPITLLESSSRLGGWVRS  112 (350)
Q Consensus        81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T  112 (350)
                      |+||    +||+||.   +.|.+|+|+|+  +.||++..
T Consensus         4 ViIIGgGpaGl~AAi~aar~G~~v~iie~--~~gg~~~~   40 (184)
T d1fl2a1           4 VLIVGSGPAGAAAAIYSARKGIRTGLMGE--RFGGQILD   40 (184)
T ss_dssp             EEEECCSHHHHHHHHHHHTTTCCEEEECS--STTGGGGG
T ss_pred             EEEECcCHHHHHHHHHHHHcCCeEEEEEE--ecCCcccc
Confidence            5666    9999987   68999999996  58998763

>d3lada2 c.3.1.5 (A:159-277) Dihydrolipoamide dehydrogenase {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.35  E-value=0.19  Score=37.42  Aligned_cols=38  Identities=13%  Similarity=0.123  Sum_probs=32.0

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCCC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQPI  345 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~G  345 (350)
                      +.+.+.+.+. .|.+|+++++|++|+.+++++.|++.++
T Consensus        65 i~~~l~~~l~~~Gv~i~~~~~v~~i~~~~~~v~v~~~~~  103 (119)
T d3lada2          65 VAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDA  103 (119)
T ss_dssp             HHHHHHHHHHHTTEEEEETCEEEEEEECSSCEEEEEESS
T ss_pred             hHHHHHHHHHhcCceeecCcEEEEEEEeCCEEEEEEEEC
Confidence            6667777776 7899999999999999999888877655

>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase {Xanthobacter sp., py2 [TaxId: 35809]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH-dependent 2-ketopropyl coenzyme M oxidoreductase/carboxylase
species: Xanthobacter sp., py2 [TaxId: 35809]

Probab=90.14  E-value=0.062  Score=45.68  Aligned_cols=31  Identities=13%  Similarity=0.027  Sum_probs=26.2

Q ss_pred             eeehh----hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          80 LLLVI----RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        80 ~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      .++||    +|+.||.   ++|.+|+|+|+.+++||.+
T Consensus        44 DvvVIGgG~aG~~aA~~~a~~G~kv~vve~~~~lGG~c   81 (261)
T d1mo9a1          44 DAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLGGSC   81 (261)
T ss_dssp             SEEEECCSHHHHHHHHHHHHTTCCEEEEESSSSSSCHH
T ss_pred             CEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccc
Confidence            35555    8998887   6899999999999999975

>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO {Bacillus sp. [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Glycine oxidase ThiO
species: Bacillus sp. [TaxId: 1409]

Probab=89.96  E-value=0.1  Score=44.03  Aligned_cols=28  Identities=21%  Similarity=0.186  Sum_probs=22.1

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      ++|+||++|+   ++|++|+|+|+.+ +|+..
T Consensus        12 aGi~Gls~A~~La~~G~~V~vlE~~~-~~~ga   42 (276)
T d1ryia1          12 GGIIGSAIAYYLAKENKNTALFESGT-MGGRT   42 (276)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSS-TTTTH
T ss_pred             cCHHHHHHHHHHHHCCCcEEEEeCCC-CCCCc
Confidence            4459999998   6899999999964 55543

>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=89.56  E-value=0.051  Score=44.80  Aligned_cols=29  Identities=31%  Similarity=0.544  Sum_probs=23.7

Q ss_pred             eehh----hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          81 LLVI----RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        81 v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      |+||    +||+||.   +.|.+|+|+|+ +.+||.+
T Consensus         8 lvVIG~GpaGl~aA~~aa~~G~~V~liE~-~~~GG~c   43 (220)
T d1lvla1           8 LLIIGGGPGGYVAAIRAGQLGIPTVLVEG-QALGGTC   43 (220)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCCEEEECS-SCTTHHH
T ss_pred             EEEECCCHHHHHHHHHHHHCCCcEEEEec-CCCCCcc
Confidence            5555    9999987   67999999997 4788864

>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Succinate dehydogenase
species: Escherichia coli [TaxId: 562]

Probab=89.56  E-value=0.065  Score=47.28  Aligned_cols=28  Identities=11%  Similarity=-0.095  Sum_probs=23.6

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      +.+|||+||+   ++|.+|+|+|+.+..||-
T Consensus        15 ~G~AGl~AAl~aa~~G~~V~lleK~~~~gg~   45 (330)
T d1neka2          15 AGGAGMRAALQISQSGQTCALLSKVFPTRSH   45 (330)
T ss_dssp             CSHHHHHHHHHHHHTTCCCEEECSSCGGGSG
T ss_pred             cCHHHHHHHHHHHHcCCeEEEEeCCCCCCCc
Confidence            3459999987   679999999999888775

>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: L-aspartate oxidase
species: Escherichia coli [TaxId: 562]

Probab=89.52  E-value=0.079  Score=46.00  Aligned_cols=27  Identities=15%  Similarity=0.022  Sum_probs=20.5

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          82 LVIRILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      +.+|||+||.   +.| +|+|+|+.+..||.
T Consensus        15 ~G~AGl~AA~~a~~~g-~V~llEK~~~~gG~   44 (305)
T d1chua2          15 SGAAGLSLALRLADQH-QVIVLSKGPVTEGS   44 (305)
T ss_dssp             CSHHHHHHHHHHTTTS-CEEEECSSCTTC--
T ss_pred             ccHHHHHHHHHhhcCC-CEEEEECCCCCCCc
Confidence            3449999988   345 99999999988875

>d1xdia1 c.3.1.5 (A:2-161,A:276-348) Dihydrolipoamide dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=89.34  E-value=0.059  Score=45.06  Aligned_cols=30  Identities=17%  Similarity=0.336  Sum_probs=23.5

Q ss_pred             eeehh----hHhHhhh------cCCCCEEEEecCCCCCcce
Q psy7666          80 LLLVI----RILCTVL------RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        80 ~v~vi----aGLaaA~------~~G~~VtVlEa~drvGGRi  110 (350)
                      +|+||    ||++||.      .++.+|+|+|+ +++||.+
T Consensus         3 ~viVIG~GpaG~~aA~~aa~~~~~~~~V~liEk-~~~GG~c   42 (233)
T d1xdia1           3 RIVILGGGPAGYEAALVAATSHPETTQVTVIDC-DGIGGAA   42 (233)
T ss_dssp             EEEEECCSHHHHHHHHHHHHHCTTTEEEEEEES-SCTTHHH
T ss_pred             EEEEECCCHHHHHHHHHHHHcCCCCCEEEEEec-CCCCcee
Confidence            57777    9999986      24678999997 6899953

>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Mammalian thioredoxin reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.14  E-value=0.099  Score=43.25  Aligned_cols=27  Identities=15%  Similarity=0.250  Sum_probs=21.7

Q ss_pred             eehh----hHhHhhh---cCCCCEEEEecCCCCC
Q psy7666          81 LLVI----RILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        81 v~vi----aGLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      |+||    |||+||.   ++|.+|+|+|+.+..|
T Consensus         6 viVIG~GpaGl~aA~~aa~~G~kV~viE~~~~~~   39 (235)
T d1h6va1           6 LIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTP   39 (235)
T ss_dssp             EEEECCSHHHHHHHHHHGGGCCCEEEECCCCCCT
T ss_pred             EEEECCCHHHHHHHHHHHHCCCeEEEEeccCCCC
Confidence            5666    9999997   6799999999866533

>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.08  E-value=0.089  Score=43.04  Aligned_cols=25  Identities=24%  Similarity=0.363  Sum_probs=21.0

Q ss_pred             hHhHhhh---cCCCCEEEEecCCCCCcce
Q psy7666          85 RILCTVL---RISTPITLLESSSRLGGWV  110 (350)
Q Consensus        85 aGLaaA~---~~G~~VtVlEa~drvGGRi  110 (350)
                      +||+||.   ++|.+|+|+|+ +.+||-+
T Consensus        14 aG~~aA~~aar~G~kV~vIEk-~~~GG~c   41 (221)
T d3grsa1          14 GGLASARRAAELGARAAVVES-HKLGGTC   41 (221)
T ss_dssp             HHHHHHHHHHHTTCCEEEEES-SCTTHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEec-cCCCCcc
Confidence            9999987   67999999997 5778743

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=89.07  E-value=0.29  Score=35.95  Aligned_cols=36  Identities=22%  Similarity=0.271  Sum_probs=30.9

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQ  343 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~  343 (350)
                      +.+.+.+.+. .|++|++|+.|++|+.+++++.|+..
T Consensus        65 ~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~~~  101 (117)
T d1ebda2          65 MAAIIKKRLKKKGVEVVTNALAKGAEEREDGVTVTYE  101 (117)
T ss_dssp             HHHHHHHHHHHTTCEEEESEEEEEEEEETTEEEEEEE
T ss_pred             hHHHHHHHHHhcCCEEEcCCEEEEEEEcCCEEEEEEE
Confidence            6777777887 89999999999999999998877664

>d1jnra2 c.3.1.4 (A:2-256,A:402-502) Adenylylsulfate reductase A subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Adenylylsulfate reductase A subunit
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=88.55  E-value=0.082  Score=46.59  Aligned_cols=26  Identities=12%  Similarity=-0.084  Sum_probs=21.3

Q ss_pred             hhHhHhhh-------cCCCCEEEEecCCCCCcc
Q psy7666          84 IRILCTVL-------RISTPITLLESSSRLGGW  109 (350)
Q Consensus        84 iaGLaaA~-------~~G~~VtVlEa~drvGGR  109 (350)
                      +|||+||+       ++|.+|+|+|+....||-
T Consensus        31 ~AGl~AA~~aa~~~~~~G~~V~vieK~~~~gg~   63 (356)
T d1jnra2          31 FSGCGAAYEAAYWAKLGGLKVTLVEKAAVERSG   63 (356)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCEEEECSSCTTTCS
T ss_pred             HHHHHHHHHHHHHHHhCcCEEEEEeCCCCCCCh
Confidence            49999986       269999999998877664

>d1k0ia1 c.3.1.2 (A:1-173,A:276-394) p-Hydroxybenzoate hydroxylase, PHBH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: p-Hydroxybenzoate hydroxylase, PHBH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=88.28  E-value=0.077  Score=45.36  Aligned_cols=23  Identities=13%  Similarity=-0.071  Sum_probs=19.7

Q ss_pred             hhhHhHhhh---cCCCCEEEEecCCC
Q psy7666          83 VIRILCTVL---RISTPITLLESSSR  105 (350)
Q Consensus        83 viaGLaaA~---~~G~~VtVlEa~dr  105 (350)
                      +++||++|.   ++|++|+|+|+++.
T Consensus        11 Gp~Gl~~A~~L~~~G~~v~vlE~~~~   36 (292)
T d1k0ia1          11 GPSGLLLGQLLHKAGIDNVILERQTP   36 (292)
T ss_dssp             SHHHHHHHHHHHHHTCCEEEECSSCH
T ss_pred             CHHHHHHHHHHHHCCCCEEEEeCCCC
Confidence            449999997   67999999999874

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=87.89  E-value=0.15  Score=37.73  Aligned_cols=30  Identities=23%  Similarity=0.187  Sum_probs=22.2

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      ++++||    .|+-+|.   +.|.+|||+|+++++..
T Consensus        23 ~~v~IiGgG~ig~E~A~~l~~~G~~Vtlve~~~~il~   59 (117)
T d1ebda2          23 KSLVVIGGGYIGIELGTAYANFGTKVTILEGAGEILS   59 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSSST
T ss_pred             CeEEEECCCccceeeeeeecccccEEEEEEecceecc
Confidence            567777    4444443   68999999999999753

>d1lvla2 c.3.1.5 (A:151-265) Dihydrolipoamide dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=87.60  E-value=0.14  Score=37.77  Aligned_cols=29  Identities=17%  Similarity=0.271  Sum_probs=21.3

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCC
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      ++++||    .|+=+|.   +.|++|||+|+.+++.
T Consensus        22 ~~vvIiGgG~~G~E~A~~l~~~g~~Vtlve~~~~il   57 (115)
T d1lvla2          22 QHLVVVGGGYIGLELGIAYRKLGAQVSVVEARERIL   57 (115)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHHTCEEEEECSSSSSS
T ss_pred             CeEEEECCCHHHHHHHHHHhhcccceEEEeeecccc
Confidence            567777    4443343   5799999999999975

>d1vdca1 c.3.1.5 (A:1-117,A:244-316) Thioredoxin reductase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Thioredoxin reductase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=86.96  E-value=0.12  Score=41.53  Aligned_cols=28  Identities=14%  Similarity=0.061  Sum_probs=23.4

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCC
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRL  106 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drv  106 (350)
                      ++|+||    +||+||.   ++|.+|+|+|+..+.
T Consensus         6 ~~VvIIGgGpaGl~aA~~~ar~g~~v~vie~~~~~   40 (192)
T d1vdca1           6 TRLCIVGSGPAAHTAAIYAARAELKPLLFEGWMAN   40 (192)
T ss_dssp             EEEEEECCSHHHHHHHHHHHHTTCCCEEECCSSBT
T ss_pred             ceEEEECCCHHHHHHHHHHHHcCCcEEEEEeeccc
Confidence            568877    9999987   789999999987654

>d1pj5a2 c.3.1.2 (A:4-219,A:339-427) N,N-dimethylglycine oxidase {Arthrobacter globiformis [TaxId: 1665]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: N,N-dimethylglycine oxidase
species: Arthrobacter globiformis [TaxId: 1665]

Probab=86.69  E-value=0.47  Score=40.39  Aligned_cols=23  Identities=17%  Similarity=-0.083  Sum_probs=18.6

Q ss_pred             ehhhHhHhhh---cCCC-CEEEEecCC
Q psy7666          82 LVIRILCTVL---RIST-PITLLESSS  104 (350)
Q Consensus        82 ~viaGLaaA~---~~G~-~VtVlEa~d  104 (350)
                      ++|+||++|+   +.|. +|+|+|+++
T Consensus         9 aGi~G~s~A~~La~~G~~~V~liE~~~   35 (305)
T d1pj5a2           9 AGIVGTNLADELVTRGWNNITVLDQGP   35 (305)
T ss_dssp             CSHHHHHHHHHHHHTTCCCEEEECSSC
T ss_pred             cCHHHHHHHHHHHHcCCCcEEEEeCCC
Confidence            4559999997   6785 799999974

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.23  E-value=0.4  Score=35.62  Aligned_cols=38  Identities=13%  Similarity=0.192  Sum_probs=29.3

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCe--EEEEeCCC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKG--VKAVDQPI  345 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~g--v~V~~~~G  345 (350)
                      +.+.+.+.+. .|++|++|+.|++|+.++++  +.+++.++
T Consensus        66 i~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~~v~~~~~~~  106 (122)
T d1v59a2          66 VAKATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDT  106 (122)
T ss_dssp             HHHHHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEET
T ss_pred             hHHHHHHHHHhccceEEeCCEEEEEEEeCCCcEEEEEEEeC
Confidence            6667777777 78999999999999998765  55555443

>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Pyranose 2-oxidase
species: White-rot fungus (Peniophora sp. SG) [TaxId: 204723]

Probab=86.16  E-value=0.17  Score=44.46  Aligned_cols=24  Identities=0%  Similarity=-0.211  Sum_probs=19.4

Q ss_pred             hhHhHhhh---cCCCCEEEEecCCCCC
Q psy7666          84 IRILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        84 iaGLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      .||+++|.   ++|++|+||||..+.+
T Consensus        14 ~aG~v~A~~La~~G~kVlvLEaG~~~~   40 (379)
T d2f5va1          14 PIGCTYARELVGAGYKVAMFDIGEIDS   40 (379)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSSCCCS
T ss_pred             HHHHHHHHHHhhCCCeEEEEecCCCCC
Confidence            39999987   6799999999965543

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=85.16  E-value=0.24  Score=36.52  Aligned_cols=50  Identities=10%  Similarity=-0.055  Sum_probs=32.8

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCC
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLA  148 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~  148 (350)
                      ++|+||    .|+-+|.   +.|.+|||+|+++++....      +.       . +      ...+.+.+++.|+.
T Consensus        22 ~~vvIiGgG~ig~E~A~~l~~~G~~Vtlve~~~~~l~~~------d~-------~-~------~~~~~~~l~~~GV~   78 (116)
T d1gesa2          22 ERVAVVGAGYIGVELGGVINGLGAKTHLFEMFDAPLPSF------DP-------M-I------SETLVEVMNAEGPQ   78 (116)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSSSTTS------CH-------H-H------HHHHHHHHHHHSCE
T ss_pred             CEEEEECCChhhHHHHHHhhccccEEEEEeecchhhhhc------ch-------h-h------HHHHHHHHHHCCCE
Confidence            567777    4444443   6899999999999975321      10       0 1      12678888888874

>d1pn0a1 c.3.1.2 (A:1-240,A:342-461) Phenol hydroxylase {Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Phenol hydroxylase
species: Soil-living yeast (Trichosporon cutaneum) [TaxId: 5554]

Probab=85.10  E-value=0.17  Score=44.06  Aligned_cols=52  Identities=19%  Similarity=0.255  Sum_probs=33.1

Q ss_pred             ehhhHhHhhh--------cCCCCEEEEecCCCCCcceEEEecCCCeEEecCCceecCCCCCchHHHHHHHHcCCCCccc
Q psy7666          82 LVIRILCTVL--------RISTPITLLESSSRLGGWVRSVQSPEGLIFEKGPRTIRPKGRLGANTLKLVEDLGLADQVI  152 (350)
Q Consensus        82 ~viaGLaaA~--------~~G~~VtVlEa~drvGGRi~T~~~~~G~~~D~Ga~~~~~~~~~~~~l~~l~~elGl~~~l~  152 (350)
                      |+++||++|.        ++|++|+|||+++.+.-        .|     .+..+.   +   +.+++++++|+.+++.
T Consensus        15 aG~aGl~lA~~La~~~~~~~G~~v~vlEr~~~~~~--------~~-----r~~~l~---~---~~~~~L~~lGl~~~i~   74 (360)
T d1pn0a1          15 AGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVY--------NG-----QADGLQ---C---RTLESLKNLGLADKIL   74 (360)
T ss_dssp             CSHHHHHHHHHHHHHHHHSTTCCEEEECSSSSCCC--------SC-----SCCEEC---H---HHHHHHHTTTCHHHHH
T ss_pred             cCHHHHHHHHHHHhcccccCCCcEEEEcCCCCCCc--------CC-----eEEEEC---H---HHHHHHHHcCChHHHH
Confidence            4559999885        36999999999875421        11     111121   2   5678888888865433

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=84.60  E-value=0.33  Score=36.17  Aligned_cols=35  Identities=20%  Similarity=0.306  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEE
Q psy7666         307 TIVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAV  341 (350)
Q Consensus       307 ~L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~  341 (350)
                      .+.+.+.+.+. .|++|++|+.|++|+.++++++|+
T Consensus        67 ~~~~~l~~~l~~~GI~i~~~~~v~~i~~~~~~~~v~  102 (123)
T d1dxla2          67 EIRKQFQRSLEKQGMKFKLKTKVVGVDTSGDGVKLT  102 (123)
T ss_dssp             HHHHHHHHHHHHSSCCEECSEEEEEEECSSSSEEEE
T ss_pred             cchhhhhhhhhcccceEEcCCceEEEEEccCeEEEE
Confidence            36777777887 889999999999999988876554

>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC family {Streptomyces sp. [TaxId: 1931]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Streptomyces sp. [TaxId: 1931]

Probab=84.55  E-value=0.22  Score=44.01  Aligned_cols=20  Identities=15%  Similarity=0.170  Sum_probs=17.3

Q ss_pred             hHhHhhh---cCCCCEEEEecCC
Q psy7666          85 RILCTVL---RISTPITLLESSS  104 (350)
Q Consensus        85 aGLaaA~---~~G~~VtVlEa~d  104 (350)
                      +|+++|.   ++|++|+||||..
T Consensus        13 aG~v~A~rLaeaG~~VlvLEaG~   35 (367)
T d1n4wa1          13 GAAVSALRLGEAGVQTLMLEMGQ   35 (367)
T ss_dssp             HHHHHHHHHHHTTCCEEEEESSC
T ss_pred             HHHHHHHHHHHCcCeEEEEecCC
Confidence            8999987   5899999999943

>d1ojta2 c.3.1.5 (A:276-400) Dihydrolipoamide dehydrogenase {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Neisseria meningitidis [TaxId: 487]

Probab=84.18  E-value=0.65  Score=34.66  Aligned_cols=37  Identities=16%  Similarity=0.132  Sum_probs=30.5

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEEeCC
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAVDQP  344 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~~~~  344 (350)
                      +.+.+.+.+. .|++++++++|++|+.+++++.|++.+
T Consensus        69 ~~~~l~~~l~~~gv~~~~~~~v~~v~~~~~g~~v~~~~  106 (125)
T d1ojta2          69 LVKVWQKQNEYRFDNIMVNTKTVAVEPKEDGVYVTFEG  106 (125)
T ss_dssp             HHHHHHHHHGGGEEEEECSCEEEEEEEETTEEEEEEES
T ss_pred             HHHHHHHHHHHcCcccccCcEEEEEEEcCCcEEEEEEe
Confidence            6667777777 789999999999999999987776543

>d1nhpa2 c.3.1.5 (A:120-242) NADH peroxidase {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: NADH peroxidase
species: Enterococcus faecalis [TaxId: 1351]

Probab=83.49  E-value=0.39  Score=35.75  Aligned_cols=31  Identities=16%  Similarity=0.147  Sum_probs=22.2

Q ss_pred             Cceeehh----hHhHhhh---cCCCCEEEEecCCCCCc
Q psy7666          78 LLLLLVI----RILCTVL---RISTPITLLESSSRLGG  108 (350)
Q Consensus        78 ~~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGG  108 (350)
                      .++|+||    .|+=+|.   +.|.+|||+|+++++-+
T Consensus        30 ~k~vvViGgG~iG~E~A~~l~~~g~~Vtlie~~~~~l~   67 (123)
T d1nhpa2          30 VNNVVVIGSGYIGIEAAEAFAKAGKKVTVIDILDRPLG   67 (123)
T ss_dssp             CCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSSSTTT
T ss_pred             CCEEEEECChHHHHHHHHHhhccceEEEEEEecCcccc
Confidence            3667777    4444443   68999999999998643

>d3grsa2 c.3.1.5 (A:166-290) Glutathione reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.67  E-value=0.94  Score=33.54  Aligned_cols=34  Identities=21%  Similarity=0.174  Sum_probs=28.4

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCCeEEEE
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEKGVKAV  341 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~gv~V~  341 (350)
                      +.+.+.+.+. .|++|++|+.|++|..+++++.++
T Consensus        65 ~~~~~~~~l~~~Gv~i~~~~~v~~i~~~~~g~~v~   99 (125)
T d3grsa2          65 ISTNCTEELENAGVEVLKFSQVKEVKKTLSGLEVS   99 (125)
T ss_dssp             HHHHHHHHHHHTTCEEETTEEEEEEEEETTEEEEE
T ss_pred             HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeEEEE
Confidence            6666777777 789999999999999999886654

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=81.81  E-value=0.45  Score=35.13  Aligned_cols=29  Identities=7%  Similarity=0.104  Sum_probs=21.1

Q ss_pred             ceeehh-h---HhHhhh---cCCCCEEEEecCCCCC
Q psy7666          79 LLLLVI-R---ILCTVL---RISTPITLLESSSRLG  107 (350)
Q Consensus        79 ~~v~vi-a---GLaaA~---~~G~~VtVlEa~drvG  107 (350)
                      ++|+|| +   |+=.|.   +.|.+|||+|+++++-
T Consensus        23 ~~v~IiGgG~iG~E~A~~l~~~g~~Vtlv~~~~~il   58 (117)
T d1onfa2          23 KKIGIVGSGYIAVELINVIKRLGIDSYIFARGNRIL   58 (117)
T ss_dssp             SEEEEECCSHHHHHHHHHHHTTTCEEEEECSSSSSC
T ss_pred             CEEEEECCchHHHHHHHHHHhccccceeeehhcccc
Confidence            668877 3   333343   6799999999999863

>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC family {Brevibacterium sterolicum [TaxId: 1702]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD-linked reductases, N-terminal domain
domain: Cholesterol oxidase of GMC family
species: Brevibacterium sterolicum [TaxId: 1702]

Probab=80.71  E-value=0.38  Score=42.44  Aligned_cols=20  Identities=10%  Similarity=0.047  Sum_probs=17.0

Q ss_pred             CCCEEEeCcceeEEEEeCCe
Q psy7666         318 NKVEVKMDTTCTNLEFLEKG  337 (350)
Q Consensus       318 ~g~~I~l~~~V~~I~~~~~g  337 (350)
                      .+.+|+++++|++|..++++
T Consensus       236 g~~~i~t~~~V~~I~~~~~~  255 (370)
T d3coxa1         236 GKLTITTLHRVTKVAPATGS  255 (370)
T ss_dssp             TCEEEECSEEEEEEEECSSS
T ss_pred             CCcEEEecCcEEEEEEcCCC
Confidence            35799999999999998664

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=80.58  E-value=0.52  Score=35.56  Aligned_cols=31  Identities=26%  Similarity=0.236  Sum_probs=23.5

Q ss_pred             ceeehh----hHhHhhh---cCCCCEEEEecCCCCCcc
Q psy7666          79 LLLLVI----RILCTVL---RISTPITLLESSSRLGGW  109 (350)
Q Consensus        79 ~~v~vi----aGLaaA~---~~G~~VtVlEa~drvGGR  109 (350)
                      ++|+||    .|+-.|.   +.|.+|+|+|+++++..+
T Consensus        36 k~v~VIGgG~iG~E~A~~l~~~g~~Vtvie~~~~~l~~   73 (133)
T d1q1ra2          36 NRLVVIGGGYIGLEVAATAIKANMHVTLLDTAARVLER   73 (133)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSSTTTT
T ss_pred             CEEEEECCchHHHHHHHHHHhhCcceeeeeeccccccc
Confidence            668777    4444443   689999999999997665

>d1kf6a2 c.3.1.4 (A:0-225,A:358-442) Fumarate reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain
domain: Fumarate reductase
species: Escherichia coli [TaxId: 562]

Probab=80.39  E-value=0.27  Score=42.75  Aligned_cols=41  Identities=12%  Similarity=0.030  Sum_probs=27.8

Q ss_pred             HHHHHHH-hhc-CCCEEEeCcceeEEEEeCCeE---EEE-eCCCcee
Q psy7666         308 IVNTLGE-HLS-NKVEVKMDTTCTNLEFLEKGV---KAV-DQPIHQM  348 (350)
Q Consensus       308 L~~aLa~-~L~-~g~~I~l~~~V~~I~~~~~gv---~V~-~~~G~~~  348 (350)
                      +...+.+ ... .+++|..+++|++|..+++++   .+. ..+|+.+
T Consensus       136 ~~~~~l~~~~~~~~v~i~~~~~v~~Ll~d~g~v~Gvv~~~~~~g~~~  182 (311)
T d1kf6a2         136 MLHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLV  182 (311)
T ss_dssp             HHHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEE
T ss_pred             HHHhHHHHHHccCcceeEeeeEeeeeEecCCcceeEEEEEcCCCcEE
Confidence            4454444 444 679999999999999988753   222 3566654

>d1q1ra2 c.3.1.5 (A:115-247) Putidaredoxin reductase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Putidaredoxin reductase
species: Pseudomonas putida [TaxId: 303]

Probab=80.32  E-value=1.2  Score=33.39  Aligned_cols=42  Identities=10%  Similarity=0.116  Sum_probs=30.9

Q ss_pred             HHHHHHHhhc-CCCEEEeCcceeEEEEeCC--eE-EEEeCCCceec
Q psy7666         308 IVNTLGEHLS-NKVEVKMDTTCTNLEFLEK--GV-KAVDQPIHQMT  349 (350)
Q Consensus       308 L~~aLa~~L~-~g~~I~l~~~V~~I~~~~~--gv-~V~~~~G~~~~  349 (350)
                      +.+.+.+.+. .|+++++|+.|++|+...+  .+ .|.+++|+++.
T Consensus        79 ~~~~~~~~~~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~~G~~i~  124 (133)
T d1q1ra2          79 VSAFYEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCEDGTRLP  124 (133)
T ss_dssp             HHHHHHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEETTSCEEE
T ss_pred             hhhhhhhcccccccEEEeCCeEEEEEEeCCCceEEEEECCCCCEEE
Confidence            3344445555 6899999999999998644  33 58889998765

>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: Nucleotide-binding domain
superfamily: Nucleotide-binding domain
family: D-aminoacid oxidase, N-terminal domain
domain: D-aminoacid oxidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=80.02  E-value=0.075  Score=43.81  Aligned_cols=22  Identities=14%  Similarity=-0.100  Sum_probs=17.5

Q ss_pred             ehhhHhHhhh---cCCCCEEEEecC
Q psy7666          82 LVIRILCTVL---RISTPITLLESS  103 (350)
Q Consensus        82 ~viaGLaaA~---~~G~~VtVlEa~  103 (350)
                      |+|+||++|+   ++|++|+|+|+.
T Consensus         8 aGi~GlstA~~L~~~G~~v~v~e~~   32 (246)
T d1kifa1           8 AGVIGLSTALCIHERYHSVLQPLDV   32 (246)
T ss_dssp             CSHHHHHHHHHHHHHHTTTSSSCEE
T ss_pred             chHHHHHHHHHHHHCCCCceEEeee
Confidence            3459999998   579998888873