Psyllid ID: psy7685

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MPKSHIQKIHFTCTTLAVCSLSFVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ
Secondary Structure (PSIPRED)
ccccccEEEcccccccccEEEEEccEEEEEEcccccccccccccccccccccccccccHHHHHcccccccEEEEEcccccccccccccccccEEEEEEccccccccccEEEEccEEEEEccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
ccccHHEEEEEccccHHHHHHHHcccEcccccccccccHHHHccccccccccHHHHHHHHHHHccccHHHEEEEcccEccccccEccEccccEEEEccccccccccEEEEEEccEEEEEEHHHEEcccccccccccc
Coil and Loop (DISEMBL)
MPKSHIQKIHFTCTTLAVCSLSFVLYCIFAtthsdhetaavkceedeegfeGCSEFLYSVQEKLgilnngavyalydyeanntdelsfktGECIIVLRKGDENEREWWWSKLnnkegyvprnllglyprvqpsatpq
Flexible Loop (DISEMBL)
mpkshiqkIHFTCTTLAVCSLSFVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLnnkegyvprnllglyprvqpsatpq
Low Complexity Region (SEG)
MPKSHIQKIHFTCTTLAVCSLSFVLYCIFATTHSDHETAAVKceedeegfegcsefLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ
Disordered region (IsUnstruct)
*****IQKIHFTCTTLAVCSLSFVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP*********
Disordered Region (DISOPRED)
****HIQKIHFTCTTLAVCSLSFVLYCI*****************************************GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL***********
Disordered Region (DISEMBL)
MPKSHIQKIHFTCTTLAVCSLSFVLYCIFATTHSDHE*************EGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ
Disordered Region (DISPRO)
***SHIQKIHFTCTTLAVCSLSFVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPKSHIQKIHFTCTTLAVCSLSFVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q62415	1087	Apoptosis-stimulating of	yes	N/A	0.883	0.111	0.606	6e-41
Q13625	1128	Apoptosis-stimulating of	no	N/A	0.883	0.107	0.573	5e-40
Q96KQ4	1090	Apoptosis-stimulating of	no	N/A	0.883	0.111	0.581	3e-39
Q8CG79	1128	Apoptosis-stimulating of	no	N/A	0.883	0.107	0.581	4e-31
Q8WUF5	828	RelA-associated inhibitor	no	N/A	0.875	0.144	0.471	2e-30
Q5I1X5	824	RelA-associated inhibitor	no	N/A	0.868	0.144	0.467	1e-29
Q9XVN3	769	Apoptotic enhancer 1 prot	yes	N/A	0.759	0.135	0.462	3e-21
Q9NZM3	1697	Intersectin-2 OS=Homo sap	no	N/A	0.430	0.034	0.419	7e-07
P19706	1147	Myosin heavy chain IB OS=	N/A	N/A	0.364	0.043	0.490	1e-06
Q15811	1721	Intersectin-1 OS=Homo sap	no	N/A	0.430	0.034	0.403	4e-06

>sp|Q62415|ASPP1_MOUSE Apoptosis-stimulating of p53 protein 1 OS=Mus musculus GN=Ppp1r13b PE=1 SV=2

 Score =  165 bits (418), Expect = 6e-41,   Method: Composition-based stats.
 Identities = 74/122 (60%), Positives = 95/122 (77%), Gaps = 1/122 (0%)

Query: 12   TCTTLAVC-SLSFVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNG 70
            +C ++ +C  L      IFA+T SD ETAA KCEE EEG+  CS+FLY VQEKLG++N G
Sbjct: 960  SCNSVHLCKQLVESGAAIFASTISDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKG 1019

Query: 71   AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
             VYAL+DYEA N+DELSF  G+ I +LR+ DENE EWWW++L ++EGYVP+NLLGLYPR+
Sbjct: 1020 TVYALWDYEAQNSDELSFHEGDAITILRRKDENETEWWWARLGDREGYVPKNLLGLYPRI 1079

Query: 131  QP 132
            +P
Sbjct: 1080 KP 1081

Regulator that plays a central role in regulation of apoptosis via its interaction with p53/TP53. Regulates TP53 by enhancing the DNA binding and transactivation function of TP53 on the promoters of proapoptotic genes in vivo.
Mus musculus (taxid: 10090)

>sp|Q13625|ASPP2_HUMAN Apoptosis-stimulating of p53 protein 2 OS=Homo sapiens GN=TP53BP2 PE=1 SV=2

 Score =  162 bits (410), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 70/122 (57%), Positives = 92/122 (75%), Gaps = 1/122 (0%)

Query: 12   TCTTLAVCS-LSFVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNG 70
            +C  + VC  L      +FA T+SD +TAA KCEE EEG+  CS+FLY VQEK+GI+N G
Sbjct: 1001 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 1060

Query: 71   AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
             +YAL+DYE  N DEL  K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLGLYPR+
Sbjct: 1061 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 1120

Query: 131  QP 132
            +P
Sbjct: 1121 KP 1122

Regulator that plays a central role in regulation of apoptosis and cell growth via its interactions. Regulates TP53 by enhancing the DNA binding and transactivation function of TP53 on the promoters of proapoptotic genes in vivo. Inhibits the ability of APPBP1 to conjugate NEDD8 to CUL1, and thereby decreases APPBP1 ability to induce apoptosis. Impedes cell cycle progression at G2/M. Its apoptosis-stimulating activity is inhibited by its interaction with DDX42.

Homo sapiens (taxid: 9606)

>sp|Q96KQ4|ASPP1_HUMAN Apoptosis-stimulating of p53 protein 1 OS=Homo sapiens GN=PPP1R13B PE=1 SV=3

 Score =  160 bits (404), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 71/122 (58%), Positives = 94/122 (77%), Gaps = 1/122 (0%)

Query: 12   TCTTLAVC-SLSFVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNG 70
            +C ++ +C  L      IFA+T SD ETAA KCEE EEG+  CS+FLY VQEKLG++N G
Sbjct: 963  SCNSVHLCKQLVESGAAIFASTISDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKG 1022

Query: 71   AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
              YAL+DYEA N+DELSF  G+ + +LR+ DE+E EWWW++L ++EGYVP+NLLGLYPR+
Sbjct: 1023 VAYALWDYEAQNSDELSFHEGDALTILRRKDESETEWWWARLGDREGYVPKNLLGLYPRI 1082

Query: 131  QP 132
            +P
Sbjct: 1083 KP 1084

Regulator that plays a central role in regulation of apoptosis via its interaction with p53/TP53. Regulates TP53 by enhancing the DNA binding and transactivation function of TP53 on the promoters of proapoptotic genes in vivo.

Homo sapiens (taxid: 9606)

>sp|Q8CG79|ASPP2_MOUSE Apoptosis-stimulating of p53 protein 2 OS=Mus musculus GN=Tp53bp2 PE=1 SV=3

 Score =  133 bits (334), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 71/122 (58%), Positives = 92/122 (75%), Gaps = 1/122 (0%)

Query: 12   TCTTLAVCS-LSFVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNG 70
            +C  + VC  L      +FA T+SD +TAA KCEE EEG+  CS+FLY VQEK+GI+N G
Sbjct: 1001 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 1060

Query: 71   AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
             +YAL+DYE  + DEL  K G+C+ V+R+ DE E EWWW++LN+KEGYVPRNLLGLYPR+
Sbjct: 1061 VIYALWDYEPQHDDELLMKEGDCMTVIRREDEEEIEWWWARLNDKEGYVPRNLLGLYPRI 1120

Query: 131  QP 132
            +P
Sbjct: 1121 KP 1122

Regulator that plays a central role in regulation of apoptosis and cell growth via its interactions. Regulates p53/TP53 by enhancing the DNA binding and transactivation function of p53/TP53 on the promoters of proapoptotic genes in vivo. Inhibits the ability of APPBP1 to conjugate NEDD8 to CUL1, and thereby decreases APPBP1 ability to induce apoptosis. Impedes cell cycle progression at G2/M. Its apoptosis-stimulating activity is inhibited by its interaction with DDX42.

Mus musculus (taxid: 10090)

>sp|Q8WUF5|IASPP_HUMAN RelA-associated inhibitor OS=Homo sapiens GN=PPP1R13L PE=1 SV=4

 Score =  130 bits (328), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 58/123 (47%), Positives = 83/123 (67%), Gaps = 3/123 (2%)

Query: 12  TCTTLAVCSLSFVLY--CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNN 69
           +C    +C ++ V +   IFATT SD  TA  KC+   EG+  C+ +L  V++ +G++N+
Sbjct: 702 SCNDTVIC-MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS 760

Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR 129
           GAVYAL+DY A   DELSF+ GE + VLR+    E +WWW+ L+ +EGYVPRN  GL+PR
Sbjct: 761 GAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR 820

Query: 130 VQP 132
           V+P
Sbjct: 821 VKP 823

Regulator that plays a central role in regulation of apoptosis and transcription via its interaction with NF-kappa-B and p53/TP53 proteins. Blocks transcription of HIV-1 virus by inhibiting the action of both NF-kappa-B and SP1. Also inhibits p53/TP53 function, possibly by preventing the association between p53/TP53 and ASPP1 or ASPP2, and therefore suppressing the subsequent activation of apoptosis.

Homo sapiens (taxid: 9606)

>sp|Q5I1X5|IASPP_MOUSE RelA-associated inhibitor OS=Mus musculus GN=Ppp1r13l PE=1 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/122 (46%), Positives = 82/122 (67%), Gaps = 3/122 (2%)

Query: 12  TCTTLAVCSLSFVLY--CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNN 69
           +C   A+C+ + V +   IFATT SD  TA  KC+   EG+  C+ +L  V++ +G+++N
Sbjct: 698 SCNDTAICT-ALVQHGAAIFATTLSDGATAIEKCDPYREGYADCATYLADVEQSMGLMHN 756

Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR 129
           G VYAL+DY A   DELSF+ GE + VLR+    E +WWW+ L+ +EGYVPRN  GL+PR
Sbjct: 757 GVVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWASLHGQEGYVPRNYFGLFPR 816

Query: 130 VQ 131
           V+
Sbjct: 817 VK 818

Regulator that plays a central role in regulation of apoptosis and transcription via its interaction with NF-kappa-B and p53/TP53 proteins. Inhibits p53/TP53 function, possibly by preventing the association between p53/TP53 and ASPP1 or ASPP2, and therefore suppressing the subsequent activation of apoptosis.

Mus musculus (taxid: 10090)

>sp|Q9XVN3|IASPP_CAEEL Apoptotic enhancer 1 protein OS=Caenorhabditis elegans GN=ape-1 PE=1 SV=1

 Score =  100 bits (248), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 49/106 (46%), Positives = 67/106 (63%), Gaps = 2/106 (1%)

Query: 27  CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
           C+ A+T SD ET   KCEEDE+G++GC ++L +     G +N G VYA Y YEA   DEL
Sbjct: 644 CVLASTLSDMETPVEKCEEDEDGYDGCLKYLSAAHNSTGSINTGKVYAAYGYEAAFEDEL 703

Query: 87  SFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRNLLGLYPRVQ 131
           SF  G+ + V+ K D+ ++ WW  + NN E G VPR  L LYP ++
Sbjct: 704 SFDAGDELTVIEK-DKVDKNWWTCEKNNGEKGQVPRTYLALYPSLK 748

Inhibitor of cep-1, which prevents the activation of apoptosis.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9NZM3|ITSN2_HUMAN Intersectin-2 OS=Homo sapiens GN=ITSN2 PE=1 SV=3

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 72   VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
            V A+YDY ANN DELSF  G+ I V+ K D +   WW  ++N   G  P N + +     
Sbjct: 1132 VIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSNYVKMTTDSD 1188

Query: 132  PS 133
            PS
Sbjct: 1189 PS 1190

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles.

Homo sapiens (taxid: 9606)

>sp|P19706|MYSB_ACACA Myosin heavy chain IB OS=Acanthamoeba castellanii GN=MIB PE=1 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 72   VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
            V ALYDY+A   DEL+FK G+ IIV +K   +   WW  +LN K G+VP N +
Sbjct: 1095 VKALYDYDAQTGDELTFKEGDTIIVHQK---DPAGWWEGELNGKRGWVPANYV 1144

Myosin is a protein that binds to F-actin and has ATPase activity that is activated by F-actin.

Acanthamoeba castellanii (taxid: 5755)

>sp|Q15811|ITSN1_HUMAN Intersectin-1 OS=Homo sapiens GN=ITSN1 PE=1 SV=3

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 25/62 (40%), Positives = 34/62 (54%), Gaps = 3/62 (4%)

Query: 72   VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
            V  +YDY A N DEL+F  G+ I VL K D    +WW  ++N + G  P N + L   + 
Sbjct: 1160 VIGMYDYTAQNDDELAFNKGQIINVLNKEDP---DWWKGEVNGQVGLFPSNYVKLTTDMD 1216

Query: 132  PS 133
            PS
Sbjct: 1217 PS 1218

Adapter protein that may provide indirect link between the endocytic membrane traffic and the actin assembly machinery. May regulate the formation of clathrin-coated vesicles. Isoform 1 could be involved in brain-specific synaptic vesicle recycling. Inhibits ARHGAP31 activity toward RAC1.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
307177764	1216	Apoptosis-stimulating of p53 protein 1 [	0.795	0.089	0.798	1e-49
332018007	1074	Apoptosis-stimulating of p53 protein 1 [	0.781	0.099	0.813	3e-49
307214808	1075	Apoptosis-stimulating of p53 protein 2 [	0.781	0.099	0.813	2e-48
328785901	1329	PREDICTED: hypothetical protein LOC41022	0.781	0.080	0.794	7e-48
380029713	1308	PREDICTED: uncharacterized protein LOC10	0.781	0.081	0.794	7e-48
350400919	1292	PREDICTED: hypothetical protein LOC10074	0.781	0.082	0.794	1e-47
340719671	1289	PREDICTED: hypothetical protein LOC10064	0.781	0.083	0.794	1e-47
383862741	1287	PREDICTED: uncharacterized protein LOC10	0.781	0.083	0.794	1e-47
328722181	1041	PREDICTED: hypothetical protein LOC10016	0.759	0.099	0.778	5e-46
270005081	891	hypothetical protein TcasGA2_TC007089 [T	0.781	0.120	0.794	1e-45

>gi|307177764|gb|EFN66761.1| Apoptosis-stimulating of p53 protein 1 [Camponotus floridanus]

 Score =  200 bits (509), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 87/109 (79%), Positives = 99/109 (90%)

Query: 27   CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
            CIFATT SDHETAA KCEEDEEGF+GCSE+LYSVQEKLGI+NNG VYA++DYEA + DEL
Sbjct: 1106 CIFATTLSDHETAAEKCEEDEEGFDGCSEYLYSVQEKLGIMNNGQVYAVFDYEAQHADEL 1165

Query: 87   SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSAT 135
            S K G+ ++VLRKGD+NEREWWWSKL +KEGYVPRNLLGLYPRVQP+ T
Sbjct: 1166 SLKNGDSVVVLRKGDDNEREWWWSKLGHKEGYVPRNLLGLYPRVQPAKT 1214

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332018007|gb|EGI58636.1| Apoptosis-stimulating of p53 protein 1 [Acromyrmex echinatior]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 87/107 (81%), Positives = 98/107 (91%)

Query: 27   CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
            CIFATT SDHETAA KCEEDEEGF+GCSE+LYSVQEKLGI+NNG VYA++DYEA + DEL
Sbjct: 964  CIFATTLSDHETAAEKCEEDEEGFDGCSEYLYSVQEKLGIMNNGQVYAVFDYEAQHADEL 1023

Query: 87   SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 133
            S K G+ +IVLRKGD+NEREWWWSKL +KEGYVPRNLLGLYPRVQP+
Sbjct: 1024 SLKNGDSVIVLRKGDDNEREWWWSKLGHKEGYVPRNLLGLYPRVQPA 1070

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307214808|gb|EFN89695.1| Apoptosis-stimulating of p53 protein 2 [Harpegnathos saltator]

 Score =  196 bits (499), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 87/107 (81%), Positives = 98/107 (91%)

Query: 27   CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
            CIFATT SDHETAA KCEEDEEGF+GCSE+LYSVQEKLGI+NNG VYA++DYEA + DEL
Sbjct: 966  CIFATTLSDHETAAEKCEEDEEGFDGCSEYLYSVQEKLGIMNNGQVYAVFDYEAQHADEL 1025

Query: 87   SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 133
            S K G+ +IVLRKGD+NEREWWWSKL +KEGYVPRNLLGLYPRVQP+
Sbjct: 1026 SLKNGDSVIVLRKGDDNEREWWWSKLGHKEGYVPRNLLGLYPRVQPA 1072

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328785901|ref|XP_393703.4| PREDICTED: hypothetical protein LOC410220 [Apis mellifera]

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 85/107 (79%), Positives = 99/107 (92%)

Query: 27   CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
            CIFATT SDHETAA KCEEDEEGF+GCSE+LYSVQEKLGI+NNG VYA++DYEA ++DEL
Sbjct: 1220 CIFATTLSDHETAAEKCEEDEEGFDGCSEYLYSVQEKLGIMNNGQVYAVFDYEAQHSDEL 1279

Query: 87   SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 133
            + K G+ ++VLRKGD+NEREWWWSKL +KEGYVPRNLLGLYPRVQP+
Sbjct: 1280 TLKNGDSLVVLRKGDDNEREWWWSKLGHKEGYVPRNLLGLYPRVQPA 1326

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380029713|ref|XP_003698511.1| PREDICTED: uncharacterized protein LOC100870125 [Apis florea]

 Score =  194 bits (494), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 85/107 (79%), Positives = 99/107 (92%)

Query: 27   CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
            CIFATT SDHETAA KCEEDEEGF+GCSE+LYSVQEKLGI+NNG VYA++DYEA ++DEL
Sbjct: 1199 CIFATTLSDHETAAEKCEEDEEGFDGCSEYLYSVQEKLGIMNNGQVYAVFDYEAQHSDEL 1258

Query: 87   SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 133
            + K G+ ++VLRKGD+NEREWWWSKL +KEGYVPRNLLGLYPRVQP+
Sbjct: 1259 TLKNGDSLVVLRKGDDNEREWWWSKLGHKEGYVPRNLLGLYPRVQPA 1305

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350400919|ref|XP_003486003.1| PREDICTED: hypothetical protein LOC100743731 [Bombus impatiens]

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/107 (79%), Positives = 99/107 (92%)

Query: 27   CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
            CIFATT SDHETAA KCEEDEEGF+GCSE+LYSVQEKLGI+NNG VYA++DYEA ++DEL
Sbjct: 1183 CIFATTLSDHETAAEKCEEDEEGFDGCSEYLYSVQEKLGIMNNGQVYAVFDYEAQHSDEL 1242

Query: 87   SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 133
            + K G+ ++VLRKGD+NEREWWWSKL +KEGYVPRNLLGLYPRVQP+
Sbjct: 1243 TLKNGDSLVVLRKGDDNEREWWWSKLGHKEGYVPRNLLGLYPRVQPA 1289

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719671|ref|XP_003398271.1| PREDICTED: hypothetical protein LOC100646232 [Bombus terrestris]

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/107 (79%), Positives = 99/107 (92%)

Query: 27   CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
            CIFATT SDHETAA KCEEDEEGF+GCSE+LYSVQEKLGI+NNG VYA++DYEA ++DEL
Sbjct: 1180 CIFATTLSDHETAAEKCEEDEEGFDGCSEYLYSVQEKLGIMNNGQVYAVFDYEAQHSDEL 1239

Query: 87   SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 133
            + K G+ ++VLRKGD+NEREWWWSKL +KEGYVPRNLLGLYPRVQP+
Sbjct: 1240 TLKNGDSLVVLRKGDDNEREWWWSKLGHKEGYVPRNLLGLYPRVQPA 1286

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383862741|ref|XP_003706842.1| PREDICTED: uncharacterized protein LOC100877563 [Megachile rotundata]

 Score =  194 bits (493), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 85/107 (79%), Positives = 99/107 (92%)

Query: 27   CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
            CIFATT SDHETAA KCEEDEEGF+GCSE+LYSVQEKLGI+NNG VYA++DYEA ++DEL
Sbjct: 1178 CIFATTLSDHETAAEKCEEDEEGFDGCSEYLYSVQEKLGIMNNGQVYAVFDYEAQHSDEL 1237

Query: 87   SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 133
            + K G+ ++VLRKGD+NEREWWWSKL +KEGYVPRNLLGLYPRVQP+
Sbjct: 1238 TLKNGDSLVVLRKGDDNEREWWWSKLGHKEGYVPRNLLGLYPRVQPA 1284

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328722181|ref|XP_001946955.2| PREDICTED: hypothetical protein LOC100161456 [Acyrthosiphon pisum]

 Score =  188 bits (478), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 81/104 (77%), Positives = 95/104 (91%)

Query: 27   CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
            CIFATT SD ETAA KCEEDEEGF+GCSEFLYSVQEKLGI+NNGAVYA++ YEA+N DEL
Sbjct: 929  CIFATTLSDQETAAEKCEEDEEGFDGCSEFLYSVQEKLGIMNNGAVYAVFGYEAHNQDEL 988

Query: 87   SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
            +F  G+ I+VLRKGD+ EREWWWS+++++EGYVPRNLLGLYPRV
Sbjct: 989  TFDDGDRIVVLRKGDDTEREWWWSRIDDREGYVPRNLLGLYPRV 1032

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005081|gb|EFA01529.1| hypothetical protein TcasGA2_TC007089 [Tribolium castaneum]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/107 (79%), Positives = 93/107 (86%)

Query: 27  CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
           CIFATT SDHETAA KCEEDEEGF+GCSE+LYSVQEKLGIL+ G VYA++DY A   DEL
Sbjct: 783 CIFATTLSDHETAAEKCEEDEEGFDGCSEYLYSVQEKLGILSGGVVYAVFDYTAQQPDEL 842

Query: 87  SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 133
           SFK G+ + VLRKGDENEREWWWSKL +KEGYVPRNLLGLYPRV  S
Sbjct: 843 SFKAGQQLTVLRKGDENEREWWWSKLGDKEGYVPRNLLGLYPRVNRS 889

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
UNIPROTKB|F1NWV9	1094	PPP1R13B "Uncharacterized prot	0.883	0.110	0.540	2.3e-30
UNIPROTKB|F1P2P1	1101	TP53BP2 "Uncharacterized prote	0.883	0.109	0.516	3.9e-30
UNIPROTKB|B7Z2E9	367	TP53BP2 "cDNA FLJ50500, highly	0.883	0.329	0.491	4.9e-30
MGI|MGI:1336199	1087	Ppp1r13b "protein phosphatase	0.883	0.111	0.532	2.1e-29
RGD|1304651	967	Ppp1r13b "protein phosphatase	0.883	0.125	0.532	2.8e-29
UNIPROTKB|D4A6A8	1042	Ppp1r13b "Protein Ppp1r13b" [R	0.883	0.116	0.532	3.2e-29
UNIPROTKB|F1S642	1135	TP53BP2 "Uncharacterized prote	0.883	0.106	0.5	3.7e-29
UNIPROTKB|F1P985	1124	TP53BP2 "Uncharacterized prote	0.883	0.107	0.5	4.7e-29
UNIPROTKB|F1MWG7	1134	TP53BP2 "Uncharacterized prote	0.883	0.106	0.5	4.8e-29
UNIPROTKB|Q13625	1128	TP53BP2 "Apoptosis-stimulating	0.883	0.107	0.491	9.9e-29

UNIPROTKB|F1NWV9 PPP1R13B "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 347 (127.2 bits), Expect = 2.3e-30, P = 2.3e-30
 Identities = 66/122 (54%), Positives = 84/122 (68%)

Query:    12 TCTTLAVCSLSFVL-YCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
             +C ++ +C L       IFA+T SD ETAA K              LY VQEKLG++N G
Sbjct:   967 SCNSVHLCKLLVESGAAIFASTISDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKG 1026

Query:    71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
              VYAL+DYEA N DELSF  G+ I +LR+ D+NE EWWW++LN+KEGYVP+NLLGLYPR+
Sbjct:  1027 VVYALWDYEAQNNDELSFHEGDAITILRRKDDNETEWWWARLNDKEGYVPKNLLGLYPRI 1086

Query:   131 QP 132
             +P
Sbjct:  1087 KP 1088

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

UNIPROTKB|F1P2P1 TP53BP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 345 (126.5 bits), Expect = 3.9e-30, P = 3.9e-30
 Identities = 63/122 (51%), Positives = 82/122 (67%)

Query:    12 TCTTLAVCSLSFVL-YCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
             +C  + VC         +FA T+SD +TAA K              LY VQEK+GI+N G
Sbjct:   974 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 1033

Query:    71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
              +Y L+DYEA N DELS K G+C+ +LR+ DE+E EWWW++LN+KEGYVPRNLLGLYPR+
Sbjct:  1034 VIYGLWDYEAQNDDELSMKEGDCMTILRREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 1093

Query:   131 QP 132
             +P
Sbjct:  1094 KP 1095

GO:0007165 "signal transduction" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0051059 "NF-kappaB binding" evidence=IEA

UNIPROTKB|B7Z2E9 TP53BP2 "cDNA FLJ50500, highly similar to Apoptosis-stimulating of p53 protein 2" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 60/122 (49%), Positives = 80/122 (65%)

Query:    12 TCTTLAVCSLSFVL-YCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
             +C  + VC         +FA T+SD +TAA K              LY VQEK+GI+N G
Sbjct:   240 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 299

Query:    71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
              +YAL+DYE  N DEL  K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLGLYPR+
Sbjct:   300 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 359

Query:   131 QP 132
             +P
Sbjct:   360 KP 361

GO:0007417 "central nervous system development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

MGI|MGI:1336199 Ppp1r13b "protein phosphatase 1, regulatory (inhibitor) subunit 13B" [Mus musculus (taxid:10090)]

 Score = 338 (124.0 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 65/122 (53%), Positives = 84/122 (68%)

Query:    12 TCTTLAVCS-LSFVLYCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
             +C ++ +C  L      IFA+T SD ETAA K              LY VQEKLG++N G
Sbjct:   960 SCNSVHLCKQLVESGAAIFASTISDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKG 1019

Query:    71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
              VYAL+DYEA N+DELSF  G+ I +LR+ DENE EWWW++L ++EGYVP+NLLGLYPR+
Sbjct:  1020 TVYALWDYEAQNSDELSFHEGDAITILRRKDENETEWWWARLGDREGYVPKNLLGLYPRI 1079

Query:   131 QP 132
             +P
Sbjct:  1080 KP 1081

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=ISO

RGD|1304651 Ppp1r13b "protein phosphatase 1, regulatory subunit 13B" [Rattus norvegicus (taxid:10116)]

 Score = 336 (123.3 bits), Expect = 2.8e-29, P = 2.8e-29
 Identities = 65/122 (53%), Positives = 83/122 (68%)

Query:    12 TCTTLAVCS-LSFVLYCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
             +C ++ +C  L      IFA+T SD ETAA K              LY VQEKLG++N G
Sbjct:   840 SCNSVHLCKQLVESGAAIFASTISDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKG 899

Query:    71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
              VYAL+DYEA N DELSF  G+ I +LR+ DENE EWWW++L ++EGYVP+NLLGLYPR+
Sbjct:   900 IVYALWDYEAQNNDELSFHEGDAITILRRKDENETEWWWARLGDREGYVPKNLLGLYPRI 959

Query:   131 QP 132
             +P
Sbjct:   960 KP 961

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0006917 "induction of apoptosis" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|D4A6A8 Ppp1r13b "Protein Ppp1r13b" [Rattus norvegicus (taxid:10116)]

 Score = 336 (123.3 bits), Expect = 3.2e-29, P = 3.2e-29
 Identities = 65/122 (53%), Positives = 83/122 (68%)

Query:    12 TCTTLAVCS-LSFVLYCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
             +C ++ +C  L      IFA+T SD ETAA K              LY VQEKLG++N G
Sbjct:   915 SCNSVHLCKQLVESGAAIFASTISDIETAADKCEEMEEGYIQCSQFLYGVQEKLGVMNKG 974

Query:    71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
              VYAL+DYEA N DELSF  G+ I +LR+ DENE EWWW++L ++EGYVP+NLLGLYPR+
Sbjct:   975 IVYALWDYEAQNNDELSFHEGDAITILRRKDENETEWWWARLGDREGYVPKNLLGLYPRI 1034

Query:   131 QP 132
             +P
Sbjct:  1035 KP 1036

GO:0005634 "nucleus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

UNIPROTKB|F1S642 TP53BP2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 336 (123.3 bits), Expect = 3.7e-29, P = 3.7e-29
 Identities = 61/122 (50%), Positives = 81/122 (66%)

Query:    12 TCTTLAVCSLSFVL-YCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
             +C  + VC         +FA T+SD +TAA K              LY VQEK+GI+N G
Sbjct:  1008 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 1067

Query:    71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
              +YAL+DYE  N DEL  K G+C+ ++R+ DE+E EWWW++LN+KEGYVPRNLLGLYPR+
Sbjct:  1068 VIYALWDYEPQNDDELPMKEGDCMTIVRREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 1127

Query:   131 QP 132
             +P
Sbjct:  1128 KP 1129

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1P985 TP53BP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 335 (123.0 bits), Expect = 4.7e-29, P = 4.7e-29
 Identities = 61/122 (50%), Positives = 82/122 (67%)

Query:    12 TCTTLAVCSLSFVL-YCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
             +C  + VC         +FATT+SD +TAA K              LY VQEK+GI+N G
Sbjct:   997 SCNNVQVCKFLVESGAAVFATTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 1056

Query:    71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
              +YAL+DYE  N DEL  + G+C+ V+R+ DE+E EWWW++L++KEGYVPRNLLGLYPR+
Sbjct:  1057 VLYALWDYEPQNGDELPMREGDCMTVIRREDEDETEWWWARLHDKEGYVPRNLLGLYPRI 1116

Query:   131 QP 132
             +P
Sbjct:  1117 KP 1118

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1MWG7 TP53BP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 335 (123.0 bits), Expect = 4.8e-29, P = 4.8e-29
 Identities = 61/122 (50%), Positives = 81/122 (66%)

Query:    12 TCTTLAVCSLSFVL-YCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
             +C  + VC         +FA T+SD +TAA K              LY VQEK+GI+N G
Sbjct:  1007 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 1066

Query:    71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
              +YAL+DYE  N DEL  K G+C+ ++R+ DE+E EWWW++LN+KEGYVPRNLLGLYPR+
Sbjct:  1067 IIYALWDYEPQNDDELPMKEGDCMTIVRREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 1126

Query:   131 QP 132
             +P
Sbjct:  1127 KP 1128

GO:0051059 "NF-kappaB binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007165 "signal transduction" evidence=IEA

UNIPROTKB|Q13625 TP53BP2 "Apoptosis-stimulating of p53 protein 2" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 9.9e-29, P = 9.9e-29
 Identities = 60/122 (49%), Positives = 80/122 (65%)

Query:    12 TCTTLAVCSLSFVL-YCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
             +C  + VC         +FA T+SD +TAA K              LY VQEK+GI+N G
Sbjct:  1001 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 1060

Query:    71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
              +YAL+DYE  N DEL  K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLGLYPR+
Sbjct:  1061 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 1120

Query:   131 QP 132
             +P
Sbjct:  1121 KP 1122

GO:0006915 "apoptotic process" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0007417 "central nervous system development" evidence=IEA

GO:0007507 "heart development" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IEA

GO:0010212 "response to ionizing radiation" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0006917 "induction of apoptosis" evidence=IDA

GO:0045786 "negative regulation of cell cycle" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA;TAS

GO:0051059 "NF-kappaB binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0005070 "SH3/SH2 adaptor activity" evidence=TAS

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q62415	ASPP1_MOUSE	No assigned EC number	0.6065	0.8832	0.1113	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	137
cd11807	57	cd11807, SH3_ASPP, Src homology 3 domain of Apopto	3e-33
cd11954	57	cd11954, SH3_ASPP1, Src Homology 3 domain of Apopt	4e-27
cd11953	57	cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of	3e-26
cd11952	56	cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of	4e-19
cd00174	51	cd00174, SH3, Src Homology 3 domain superfamily	3e-15
smart00326	56	smart00326, SH3, Src homology 3 domains	7e-14
cd11845	52	cd11845, SH3_Src_like, Src homology 3 domain of Sr	3e-13
pfam00018	47	pfam00018, SH3_1, SH3 domain	1e-12
cd11800	57	cd11800, SH3_DNMBP_C2_like, Second C-terminal Src	2e-11
cd11806	53	cd11806, SH3_PRMT2, Src homology 3 domain of Prote	2e-11
cd11827	53	cd11827, SH3_MyoIe_If_like, Src homology 3 domain	7e-11
cd11840	53	cd11840, SH3_Intersectin_5, Fifth Src homology 3 d	8e-11
cd11817	50	cd11817, SH3_Eve1_4, Fourth Src homology 3 domain	1e-10
cd11820	54	cd11820, SH3_STAM, Src homology 3 domain of Signal	1e-10
cd11996	54	cd11996, SH3_Intersectin2_5, Fifth Src homology 3	3e-10
cd11856	53	cd11856, SH3_p47phox_like, Src homology 3 domains	3e-10
cd11812	52	cd11812, SH3_AHI-1, Src Homology 3 domain of Abels	4e-10
cd11805	53	cd11805, SH3_GRB2_like_C, C-terminal Src homology	4e-10
cd11875	55	cd11875, SH3_CD2AP-like_3, Third Src Homology 3 do	7e-10
cd12056	57	cd12056, SH3_CD2AP_3, Third Src Homology 3 domain	1e-09
cd11772	53	cd11772, SH3_OSTF1, Src Homology 3 domain of metaz	1e-09
cd11821	53	cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP	2e-09
cd11842	55	cd11842, SH3_Ysc84p_like, Src homology 3 domain of	3e-09
cd11823	53	cd11823, SH3_Nostrin, Src homology 3 domain of Nit	3e-09
cd11843	53	cd11843, SH3_PACSIN, Src homology 3 domain of Prot	3e-09
cd11804	52	cd11804, SH3_GRB2_like_N, N-terminal Src homology	4e-09
cd11947	52	cd11947, SH3_GRAP2_N, N-terminal Src homology 3 do	6e-09
cd11824	53	cd11824, SH3_PSTPIP1, Src homology 3 domain of Pro	6e-09
cd11826	52	cd11826, SH3_Abi, Src homology 3 domain of Abl Int	7e-09
cd11946	56	cd11946, SH3_GRB2_N, N-terminal Src homology 3 dom	1e-08
cd11764	54	cd11764, SH3_Eps8, Src Homology 3 domain of Epider	1e-08
cd12024	53	cd12024, SH3_NoxO1_2, Second or C-terminal Src hom	1e-08
cd12001	68	cd12001, SH3_BCAR1, Src homology 3 domain of the C	1e-08
cd11803	55	cd11803, SH3_Endophilin_A, Src homology 3 domain o	2e-08
cd12003	62	cd12003, SH3_EFS, Src homology 3 domain of CAS (Cr	2e-08
cd12141	57	cd12141, SH3_DNMBP_C2, Second C-terminal Src homol	2e-08
cd11876	58	cd11876, SH3_MLK, Src Homology 3 domain of Mixed L	2e-08
cd11877	53	cd11877, SH3_PIX, Src Homology 3 domain of Pak Int	2e-08
cd11786	53	cd11786, SH3_SH3RF_1, First Src Homology 3 domain	2e-08
cd11964	55	cd11964, SH3_STAM1, Src homology 3 domain of Signa	3e-08
cd11950	53	cd11950, SH3_GRAP2_C, C-terminal Src homology 3 do	5e-08
cd11828	53	cd11828, SH3_ARHGEF9_like, Src homology 3 domain o	5e-08
cd11995	54	cd11995, SH3_Intersectin1_5, Fifth Src homology 3	5e-08
cd11775	57	cd11775, SH3_Sla1p_3, Third Src Homology 3 domain	6e-08
cd11963	57	cd11963, SH3_STAM2, Src homology 3 domain of Signa	6e-08
pfam07653	53	pfam07653, SH3_2, Variant SH3 domain	7e-08
cd12142	55	cd12142, SH3_D21-like, Src Homology 3 domain of SH	8e-08
cd11758	55	cd11758, SH3_CRK_N, N-terminal Src Homology 3 doma	9e-08
cd11948	54	cd11948, SH3_GRAP_N, N-terminal Src homology 3 dom	1e-07
cd11949	53	cd11949, SH3_GRB2_C, C-terminal Src homology 3 dom	1e-07
cd11986	53	cd11986, SH3_Stac3_1, First C-terminal Src homolog	1e-07
cd11762	57	cd11762, SH3_FCHSD_2, Second Src Homology 3 domain	2e-07
cd11844	56	cd11844, SH3_CAS, Src homology 3 domain of CAS (Cr	2e-07
cd11808	53	cd11808, SH3_Alpha_Spectrin, Src homology 3 domain	2e-07
cd11874	53	cd11874, SH3_CD2AP-like_2, Second Src Homology 3 d	2e-07
cd12059	58	cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixe	2e-07
cd11847	58	cd11847, SH3_Brk, Src homology 3 domain of Brk (Br	2e-07
cd12004	56	cd12004, SH3_Lyn, Src homology 3 domain of Lyn Pro	2e-07
cd11818	50	cd11818, SH3_Eve1_5, Fifth Src homology 3 domain o	2e-07
cd12007	58	cd12007, SH3_Yes, Src homology 3 domain of Yes Pro	2e-07
cd11761	57	cd11761, SH3_FCHSD_1, First Src Homology 3 domain	2e-07
cd12058	58	cd12058, SH3_MLK4, Src Homology 3 domain of Mixed	3e-07
cd11973	73	cd11973, SH3_ASEF, Src homology 3 domain of APC-St	4e-07
cd11975	62	cd11975, SH3_ARHGEF9, Src homology 3 domain of the	4e-07
cd11858	55	cd11858, SH3_Myosin-I_fungi, Src homology 3 domain	4e-07
cd11771	60	cd11771, SH3_Pex13p_fungal, Src Homology 3 domain	5e-07
cd11878	54	cd11878, SH3_Bem1p_1, First Src Homology 3 domain	6e-07
cd11782	53	cd11782, SH3_Sorbs_2, Second Src Homology 3 domain	7e-07
cd11951	53	cd11951, SH3_GRAP_C, C-terminal Src homology 3 dom	8e-07
cd12046	53	cd12046, SH3_p67phox_C, C-terminal (or second) Src	8e-07
cd12000	57	cd12000, SH3_CASS4, Src homology 3 domain of CAS (	8e-07
cd11998	56	cd11998, SH3_PACSIN1-2, Src homology 3 domain of P	1e-06
cd12057	56	cd12057, SH3_CIN85_3, Third Src Homology 3 domain	1e-06
cd11873	53	cd11873, SH3_CD2AP-like_1, First Src Homology 3 do	2e-06
cd11866	53	cd11866, SH3_SKAP1-like, Src Homology 3 domain of	2e-06
cd11974	54	cd11974, SH3_ASEF2, Src homology 3 domain of APC-S	2e-06
cd12013	61	cd12013, SH3_RIM-BP_3, Third Src homology 3 domain	2e-06
cd11894	56	cd11894, SH3_FCHSD2_2, Second Src Homology 3 domai	2e-06
cd12012	62	cd12012, SH3_RIM-BP_2, Second Src homology 3 domai	2e-06
cd11904	57	cd11904, SH3_Nck1_3, Third Src Homology 3 domain o	2e-06
cd11767	56	cd11767, SH3_Nck_3, Third Src Homology 3 domain of	2e-06
cd11763	55	cd11763, SH3_SNX9_like, Src Homology 3 domain of S	2e-06
cd11906	55	cd11906, SH3_BTK, Src Homology 3 domain of Bruton'	3e-06
cd11773	57	cd11773, SH3_Sla1p_1, First Src Homology 3 domain	3e-06
cd11819	54	cd11819, SH3_Cortactin_like, Src homology 3 domain	4e-06
cd11778	51	cd11778, SH3_Bzz1_2, Second Src Homology 3 domain	4e-06
cd11841	54	cd11841, SH3_SH3YL1_like, Src homology 3 domain of	4e-06
cd11836	55	cd11836, SH3_Intersectin_1, First Src homology 3 d	4e-06
cd11959	53	cd11959, SH3_Cortactin, Src homology 3 domain of C	4e-06
cd12009	54	cd12009, SH3_Blk, Src homology 3 domain of Blk Pro	5e-06
cd12005	54	cd12005, SH3_Lck, Src homology 3 domain of Lck Pro	5e-06
cd12002	57	cd12002, SH3_NEDD9, Src homology 3 domain of CAS (	5e-06
cd11787	53	cd11787, SH3_SH3RF_2, Second Src Homology 3 domain	5e-06
cd12006	56	cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn	5e-06
cd11999	56	cd11999, SH3_PACSIN_like, Src homology 3 domain of	6e-06
cd12052	53	cd12052, SH3_CIN85_1, First Src Homology 3 domain	7e-06
cd11928	54	cd11928, SH3_SH3RF3_1, First Src Homology 3 domain	7e-06
cd11997	56	cd11997, SH3_PACSIN3, Src homology 3 domain of Pro	8e-06
cd11770	54	cd11770, SH3_Nephrocystin, Src Homology 3 domain o	1e-05
cd11766	53	cd11766, SH3_Nck_2, Second Src Homology 3 domain o	1e-05
cd11991	52	cd11991, SH3_Intersectin1_3, Third Src homology 3	1e-05
cd11927	54	cd11927, SH3_SH3RF1_1, First Src Homology 3 domain	1e-05
cd11941	57	cd11941, SH3_ARHGEF37_C2, Second C-terminal Src ho	1e-05
cd11833	53	cd11833, SH3_Stac_1, First C-terminal Src homology	1e-05
cd11855	55	cd11855, SH3_Sho1p, Src homology 3 domain of High	1e-05
cd11790	64	cd11790, SH3_Amphiphysin, Src Homology 3 domain of	2e-05
cd11972	61	cd11972, SH3_Abi2, Src homology 3 domain of Abl In	2e-05
cd11965	57	cd11965, SH3_ASAP1, Src homology 3 domain of ArfGA	2e-05
cd11765	51	cd11765, SH3_Nck_1, First Src Homology 3 domain of	2e-05
cd11908	56	cd11908, SH3_ITK, Src Homology 3 domain of Interle	2e-05
cd12008	56	cd12008, SH3_Src, Src homology 3 domain of Src Pro	2e-05
cd11849	53	cd11849, SH3_SPIN90, Src homology 3 domain of SH3	2e-05
cd11883	55	cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25	2e-05
cd11960	54	cd11960, SH3_Abp1_eu, Src homology 3 domain of eum	2e-05
cd12044	53	cd12044, SH3_SKAP1, Src Homology 3 domain of Src K	3e-05
cd12021	53	cd12021, SH3_p47phox_1, First or N-terminal Src ho	3e-05
cd12073	55	cd12073, SH3_HS1, Src homology 3 domain of Hematop	3e-05
cd12054	55	cd12054, SH3_CD2AP_2, Second Src Homology 3 domain	3e-05
cd12061	54	cd12061, SH3_betaPIX, Src Homology 3 domain of bet	3e-05
cd11837	53	cd11837, SH3_Intersectin_2, Second Src homology 3	3e-05
cd11809	53	cd11809, SH3_srGAP, Src homology 3 domain of Slit-	4e-05
cd11774	52	cd11774, SH3_Sla1p_2, Second Src Homology 3 domain	4e-05
cd11966	56	cd11966, SH3_ASAP2, Src homology 3 domain of ArfGA	4e-05
cd11905	56	cd11905, SH3_Tec, Src Homology 3 domain of Tec (Ty	4e-05
cd11933	58	cd11933, SH3_Nebulin_C, C-terminal Src Homology 3	5e-05
cd11768	54	cd11768, SH3_Tec_like, Src Homology 3 domain of Te	6e-05
cd11912	55	cd11912, SH3_Bzz1_1, First Src Homology 3 domain o	6e-05
cd11929	54	cd11929, SH3_SH3RF2_1, First Src Homology 3 domain	7e-05
cd11971	59	cd11971, SH3_Abi1, Src homology 3 domain of Abl In	8e-05
cd11802	52	cd11802, SH3_Endophilin_B, Src homology 3 domain o	8e-05
cd11961	53	cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src	1e-04
cd11838	52	cd11838, SH3_Intersectin_3, Third Src homology 3 d	1e-04
cd11920	55	cd11920, SH3_Sorbs2_1, First Src Homology 3 domain	1e-04
cd11781	53	cd11781, SH3_Sorbs_1, First Src Homology 3 domain	1e-04
cd11788	59	cd11788, SH3_RasGAP, Src Homology 3 domain of Ras	1e-04
cd12060	58	cd12060, SH3_alphaPIX, Src Homology 3 domain of al	1e-04
cd11825	54	cd11825, SH3_PLCgamma, Src homology 3 domain of Ph	1e-04
cd11816	51	cd11816, SH3_Eve1_3, Third Src homology 3 domain o	1e-04
cd11887	60	cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 a	2e-04
cd11789	55	cd11789, SH3_Nebulin_family_C, C-terminal Src Homo	2e-04
cd11884	56	cd11884, SH3_MYO15, Src Homology 3 domain of Myosi	2e-04
cd11864	58	cd11864, SH3_PEX13_eumet, Src Homology 3 domain of	2e-04
cd11882	54	cd11882, SH3_GRAF-like, Src Homology 3 domain of G	3e-04
cd12053	56	cd12053, SH3_CD2AP_1, First Src Homology 3 domain	3e-04
cd11956	55	cd11956, SH3_srGAP4, Src homology 3 domain of Slit	4e-04
cd11895	58	cd11895, SH3_FCHSD1_2, Second Src Homology 3 domai	5e-04
cd12055	53	cd12055, SH3_CIN85_2, Second Src Homology 3 domain	5e-04
cd11992	52	cd11992, SH3_Intersectin2_3, Third Src homology 3	5e-04
cd11988	57	cd11988, SH3_Intersectin2_1, First Src homology 3	5e-04
cd12017	53	cd12017, SH3_Tks_3, Third Src homology 3 domain of	6e-04
cd11857	55	cd11857, SH3_DBS, Src homology 3 domain of DBL's B	6e-04
cd12016	54	cd12016, SH3_Tks_2, Second Src homology 3 domain o	7e-04
cd11955	53	cd11955, SH3_srGAP1-3, Src homology 3 domain of Sl	7e-04
cd11835	54	cd11835, SH3_ARHGAP32_33, Src homology 3 domain of	7e-04
cd11911	55	cd11911, SH3_CIP4-like, Src Homology 3 domain of C	8e-04
cd11923	57	cd11923, SH3_Sorbs2_2, Second Src Homology 3 domai	8e-04
cd12074	53	cd12074, SH3_Tks5_1, First Src homology 3 domain o	8e-04
cd11969	55	cd11969, SH3_PLCgamma2, Src homology 3 domain of P	0.001
cd12045	53	cd12045, SH3_SKAP2, Src Homology 3 domain of Src K	0.001
cd11815	52	cd11815, SH3_Eve1_2, Second Src homology 3 domain	0.001
cd11888	54	cd11888, SH3_ARHGAP9_like, Src Homology 3 domain o	0.001
cd11976	54	cd11976, SH3_VAV1_2, C-terminal (or second) Src ho	0.002
cd11903	59	cd11903, SH3_Nck2_3, Third Src Homology 3 domain o	0.002
cd11757	52	cd11757, SH3_SH3BP4, Src Homology 3 domain of SH3	0.002
cd11869	54	cd11869, SH3_p40phox, Src Homology 3 domain of the	0.002
cd11810	50	cd11810, SH3_RUSC1_like, Src homology 3 domain of	0.002
cd11985	53	cd11985, SH3_Stac2_C, C-terminal Src homology 3 do	0.002
cd12015	53	cd12015, SH3_Tks_1, First Src homology 3 domain of	0.002
cd11769	57	cd11769, SH3_CSK, Src Homology 3 domain of C-termi	0.002
cd11935	58	cd11935, SH3_Nebulette_C, C-terminal Src Homology	0.002
cd12076	54	cd12076, SH3_Tks4_2, Second Src homology 3 domain	0.002
cd11885	55	cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 d	0.003
cd11830	54	cd11830, SH3_VAV_2, C-terminal (or second) Src hom	0.003
cd11934	59	cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 do	0.003
cd11901	55	cd11901, SH3_Nck1_2, Second Src Homology 3 domain	0.003
cd11931	55	cd11931, SH3_SH3RF3_2, Second Src Homology 3 domai	0.003
cd12078	53	cd12078, SH3_Tks4_3, Third Src homology 3 domain o	0.003
cd11871	54	cd11871, SH3_p67phox_N, N-terminal (or first) Src	0.004
cd11813	53	cd11813, SH3_SGSM3, Src Homology 3 domain of Small	0.004
cd12077	54	cd12077, SH3_Tks5_2, Second Src homology 3 domain	0.004

>gnl|CDD|212741 cd11807, SH3_ASPP, Src homology 3 domain of Apoptosis Stimulating of p53 proteins (ASPP)

 Score =  110 bits (277), Expect = 3e-33
 Identities = 41/57 (71%), Positives = 50/57 (87%)

Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           G VYAL+DYEA N DELSF+ G+ + VLRKGD++E EWWW++LN+KEGYVPRNLLGL
Sbjct: 1   GVVYALFDYEAENGDELSFREGDELTVLRKGDDDETEWWWARLNDKEGYVPRNLLGL 57

The ASPP family of proteins bind to important regulators of apoptosis (p53, Bcl-2, and RelA) and cell growth (APCL, PP1). They share similarity at their C-termini, where they harbor a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain. Vertebrates contain three members of the family: ASPP1, ASPP2, and iASPP. ASPP1 and ASPP2 activate the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73), while iASPP is an oncoprotein that specifically inhibits p53-induced apoptosis. The expression of ASPP proteins is altered in tumors; ASPP1 and ASPP2 are downregulated whereas iASPP is upregulated is some cancer types. ASPP proteins also bind and regulate protein phosphatase 1 (PP1), and this binding is competitive with p53 binding. The SH3 domain and the ANK repeats of ASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212887 cd11954, SH3_ASPP1, Src Homology 3 domain of Apoptosis Stimulating of p53 protein 1

 Score = 95.1 bits (236), Expect = 4e-27
 Identities = 38/57 (66%), Positives = 49/57 (85%)

Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           G VYAL+DYEA N DELSF+ G+ I +LR+ D++E EWWW++LN+KEGYVP+NLLGL
Sbjct: 1   GMVYALWDYEAQNADELSFQEGDAITILRRKDDSETEWWWARLNDKEGYVPKNLLGL 57

ASPP1, like ASPP2, activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). In addition, it functions in the cytoplasm to regulate the nuclear localization of the transcriptional cofactors YAP and TAZ by inihibiting their phosphorylation; YAP and TAZ are important regulators of cell expansion, differentiation, migration, and invasion. ASPP1 is downregulated in breast tumors expressing wild-type p53. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP1 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212886 cd11953, SH3_ASPP2, Src Homology 3 (SH3) domain of Apoptosis Stimulating of p53 protein 2

 Score = 93.1 bits (231), Expect = 3e-26
 Identities = 39/57 (68%), Positives = 49/57 (85%)

Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           G VYAL+DYE  + DELSFK G+C+ +LR+ DE+E EWWW++LN+KEGYVPRNLLGL
Sbjct: 1   GVVYALWDYEGESDDELSFKEGDCMTILRREDEDETEWWWARLNDKEGYVPRNLLGL 57

ASPP2 is the full length form of the previously-identified tumor supressor, p53-binding protein 2 (p53BP2). ASPP2 activates the apoptotic function of the p53 family of tumor suppressors (p53, p63, and p73). It plays a central role in regulating apoptosis and cell growth; ASPP2-deficient mice show postnatal death. Downregulated expression of ASPP2 is frequently found in breast tumors, lung cancer, and diffuse large B-cell lymphoma where it is correlated with a poor clinical outcome. ASPP2 contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of ASPP2 contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212885 cd11952, SH3_iASPP, Src Homology 3 (SH3) domain of Inhibitor of ASPP protein (iASPP)

 Score = 75.0 bits (184), Expect = 4e-19
 Identities = 33/57 (57%), Positives = 39/57 (68%), Gaps = 1/57 (1%)

Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           G VYAL+DY A   DELSFK G+ + VLRK D    +WWW+ L  +EGYVPRN  GL
Sbjct: 1   GVVYALWDYSAEFPDELSFKEGDMVTVLRK-DGEGTDWWWASLCGREGYVPRNYFGL 56

iASPP, also called RelA-associated inhibitor (RAI), is an oncoprotein that inhibits the apoptotic transactivation potential of p53. It is upregulated in human breast cancers expressing wild-type p53, in acute leukemias regardless of the p53 mutation status, as well as in ovarian cancer where it is associated with poor patient outcome and chemoresistance. iASPP is also a binding partner and negative regulator of p65RelA, which promotes cell proliferation and inhibits apoptosis; p65RelA has the opposite effect on cell growth compared to the p53 family. It contains a proline-rich region, four ankyrin (ANK) repeats, and an SH3 domain at its C-terminal half. The SH3 domain and the ANK repeats of iASPP contribute to the p53 binding site; they bind to the DNA binding domain of p53. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212690 cd00174, SH3, Src Homology 3 domain superfamily

 Score = 64.8 bits (159), Expect = 3e-15
 Identities = 25/52 (48%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRN 122
             ALYDYEA + DELSFK G+ I VL K D+    WW       +EG  P N
Sbjct: 2   ARALYDYEAQDDDELSFKKGDIITVLEKDDDG---WWEGELNGGREGLFPAN 50

Src Homology 3 (SH3) domains are protein interaction domains that bind proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. Thus, they are referred to as proline-recognition domains (PRDs). SH3 domains are less selective and show more diverse specificity compared to other PRDs. They have been shown to bind peptide sequences that lack the PxxP motif; examples include the PxxDY motif of Eps8 and the RKxxYxxY sequence in SKAP55. SH3 domain containing proteins play versatile and diverse roles in the cell, including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies, among others. Many members of this superfamily are adaptor proteins that associate with a number of protein partners, facilitating complex formation and signal transduction. Length = 51

>gnl|CDD|214620 smart00326, SH3, Src homology 3 domains

 Score = 61.4 bits (150), Expect = 7e-14
 Identities = 26/52 (50%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRN 122
           V ALYDY A + DELSFK G+ I VL K D+    WW       KEG  P N
Sbjct: 5   VRALYDYTAQDPDELSFKKGDIITVLEKSDDG---WWKGRLGRGKEGLFPSN 53

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations. Length = 56

>gnl|CDD|212779 cd11845, SH3_Src_like, Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases

 Score = 59.5 bits (145), Expect = 3e-13
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           ALYDYEA   D+LSFK G+ + +L   D    +WW        KEGY+P N
Sbjct: 4   ALYDYEARTDDDLSFKKGDRLQILDDSDG---DWWLARHLSTGKEGYIPSN 51

Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|215659 pfam00018, SH3_1, SH3 domain

 Score = 58.0 bits (141), Expect = 1e-12
 Identities = 25/49 (51%), Positives = 28/49 (57%), Gaps = 6/49 (12%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS--KLNNKEGYVP 120
           ALYDY A   DELSFK G+ IIVL K D+     WW       KEG +P
Sbjct: 2   ALYDYTAREPDELSFKKGDIIIVLEKSDDG----WWKGRLKGGKEGLIP 46

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 47

>gnl|CDD|212734 cd11800, SH3_DNMBP_C2_like, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 55.1 bits (133), Expect = 2e-11
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 1/55 (1%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLG 125
            YALY +EA +  ELS   G+ + VL K D +   EWW  +   K+GYVP N L 
Sbjct: 2   YYALYTFEARSPGELSVTEGQVVTVLEKHDLKGNPEWWLVEDRGKQGYVPSNYLA 56

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. Also included in this subfamily is the second C-terminal SH3 domain of Rho guanine nucleotide exchange factor 37 (ARHGEF37), whose function is still unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212740 cd11806, SH3_PRMT2, Src homology 3 domain of Protein arginine N-methyltransferase 2

 Score = 54.7 bits (132), Expect = 2e-11
 Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 125
             A+ D+ A +  +LSF++G+ ++VLRK      +WWW++ N   GY+P + L 
Sbjct: 2   YVAIADFVATDDSQLSFESGDKLLVLRK---PSVDWWWAEHNGCCGYIPASHLH 52

PRMT2, also called HRMT1L1, belongs to the arginine methyltransferase protein family. It functions as a coactivator to both estrogen receptor alpha (ER-alpha) and androgen receptor (AR), presumably through arginine methylation. The ER-alpha transcription factor is involved in cell proliferation, differentiation, morphogenesis, and apoptosis, and is also implicated in the development and progression of breast cancer. PRMT2 and its variants are upregulated in breast cancer cells and may be involved in modulating the ER-alpha signaling pathway during formation of breast cancer. PRMT2 also plays a role in regulating the function of E2F transcription factors, which are critical cell cycle regulators, by binding to the retinoblastoma gene product (RB). It contains an N-terminal SH3 domain and an AdoMet binding domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212761 cd11827, SH3_MyoIe_If_like, Src homology 3 domain of Myosins Ie, If, and similar proteins

 Score = 53.6 bits (129), Expect = 7e-11
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY Y+A +TDELSF  G+ I +L+   E+   WW  +L  KEG  P N
Sbjct: 4   ALYAYDAQDTDELSFNEGDIIEILK---EDPSGWWTGRLRGKEGLFPGN 49

Myosins Ie (MyoIe) and If (MyoIf) are nonmuscle, unconventional, long tailed, class I myosins containing an N-terminal motor domain and a myosin tail with TH1, TH2, and SH3 domains. MyoIe interacts with the endocytic proteins, dynamin and synaptojanin-1, through its SH3 domain; it may play a role in clathrin-dependent endocytosis. In the kidney, MyoIe is critical for podocyte function and normal glomerular filtration. Mutations in MyoIe is associated with focal segmental glomerulosclerosis, a disease characterized by massive proteinuria and progression to end-stage kidney disease. MyoIf is predominantly expressed in the immune system; it plays a role in immune cell motility and innate immunity. Mutations in MyoIf may be associated with the loss of hearing. The MyoIf gene has also been found to be fused to the MLL (Mixed lineage leukemia) gene in infant acute myeloid leukemias (AML). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212774 cd11840, SH3_Intersectin_5, Fifth Src homology 3 domain (or SH3E) of Intersectin

 Score = 53.6 bits (129), Expect = 8e-11
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V AL+ Y A N DELSF+ G+ I VL K D    +WW  +LN + G  P N
Sbjct: 2   VIALFPYTAQNEDELSFQKGDIINVLSKDDP---DWWRGELNGQTGLFPSN 49

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212751 cd11817, SH3_Eve1_4, Fourth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 52.9 bits (127), Expect = 1e-10
 Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALYD+     ++LSF+ G+ I+V    D    EW   +LN +EG  PR 
Sbjct: 4   ALYDFTGETEEDLSFQRGDRILVTEHLDA---EWSRGRLNGREGIFPRA 49

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212754 cd11820, SH3_STAM, Src homology 3 domain of Signal Transducing Adaptor Molecules

 Score = 52.9 bits (127), Expect = 1e-10
 Identities = 24/51 (47%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALYD+EA   +EL+FK GE I VL   D N   WW    +  EG  P N
Sbjct: 3   VRALYDFEAAEDNELTFKAGEIITVLDDSDPN---WWKGSNHRGEGLFPAN 50

STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. There are two vertebrate STAMs, STAM1 and STAM2, which may be functionally redundant; vertebrate STAMs contain ITAM motifs. They are part of the endosomal sorting complex required for transport (ESCRT-0). STAM2 deficiency in mice did not cause any obvious abnormality, while STAM1 deficiency resulted in growth retardation. Loss of both STAM1 and STAM2 in mice proved lethal, indicating that STAMs are important for embryonic development. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212929 cd11996, SH3_Intersectin2_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-2

 Score = 51.9 bits (124), Expect = 3e-10
 Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
             V A+YDY ANN DELSF  G+ I VL K D    +WW  ++N   G  P N + +
Sbjct: 1   CQVIAMYDYTANNEDELSFSKGQLINVLNKDDP---DWWQGEINGVTGLFPSNYVKM 54

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN2 is expected to bind protein partners, similar to ITSN1 which has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212790 cd11856, SH3_p47phox_like, Src homology 3 domains of the p47phox subunit of NADPH oxidase and similar domains

 Score = 51.9 bits (125), Expect = 3e-10
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 3/52 (5%)

Query: 73  YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
            A+ DYEA   DE+S + GE + VL K   N+  WW+ +  +KEG+VP + L
Sbjct: 3   VAIADYEAQGDDEISLQEGEVVEVLEK---NDSGWWYVRKGDKEGWVPASYL 51

This family is composed of the tandem SH3 domains of p47phox subunit of NADPH oxidase and Nox Organizing protein 1 (NoxO1), the four SH3 domains of Tks4 (Tyr kinase substrate with four SH3 domains), the five SH3 domains of Tks5, the SH3 domain of obscurin, Myosin-I, and similar domains. Most members of this group also contain Phox homology (PX) domains, except for obscurin and Myosin-I. p47phox and NoxO1 are regulators of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) and nonphagocytic NADPH oxidase Nox1, respectively. They play roles in the activation of their respective NADPH oxidase, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Obscurin is a giant muscle protein that plays important roles in the organization and assembly of the myofibril and the sarcoplasmic reticulum. Type I myosins (Myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212746 cd11812, SH3_AHI-1, Src Homology 3 domain of Abelson helper integration site-1 (AHI-1)

 Score = 51.7 bits (124), Expect = 4e-10
 Identities = 25/52 (48%), Positives = 33/52 (63%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRN 122
           V ALYDY AN +DEL+   G+ I VL K ++N   WW+  L N ++GY P N
Sbjct: 2   VVALYDYTANRSDELTIHRGDIIRVLYKDNDN---WWFGSLVNGQQGYFPAN 50

AHI-1, also called Jouberin, is expressed in high levels in the brain, gonad tissues, and skeletal muscle. It is an adaptor protein that interacts with the small GTPase Rab8a and regulates it distribution and function, affecting cilium formation and vesicle transport. Mutations in the AHI-1 gene can cause Joubert syndrome, a disorder characterized by brainstem malformations, cerebellar aplasia/hypoplasia, and retinal dystrophy. AHI-1 variation is also associated with susceptibility to schizophrenia and type 2 diabetes mellitus progression. AHI-1 contains WD40 and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212739 cd11805, SH3_GRB2_like_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 51.5 bits (124), Expect = 4e-10
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALYD+      EL F+ G+ I VL   D +   WW  +L  + G  P N
Sbjct: 2   VQALYDFNPQEPGELEFRRGDIITVLDSSDPD---WWKGELRGRVGIFPAN 49

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The C-terminal SH3 domains (SH3c) of GRB2 and GRAP2 have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212808 cd11875, SH3_CD2AP-like_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein and similar proteins

 Score = 51.2 bits (123), Expect = 7e-10
 Identities = 21/49 (42%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
            L+DYEA N DEL+ + G+ + +L K D  ++ WW  +LN K G  P N
Sbjct: 4   VLFDYEAENEDELTLREGDIVTILSK-DCEDKGWWKGELNGKRGVFPDN 51

This subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212989 cd12056, SH3_CD2AP_3, Third Src Homology 3 domain (SH3C) of CD2-associated protein

 Score = 50.6 bits (121), Expect = 1e-09
 Identities = 25/49 (51%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           AL+ YE  N DEL FK GE I+++ K D  E  WW  +LN KEG  P N
Sbjct: 6   ALFHYEGTNEDELDFKEGEIILIISK-DTGEPGWWKGELNGKEGVFPDN 53

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CD2AP. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212706 cd11772, SH3_OSTF1, Src Homology 3 domain of metazoan osteoclast stimulating factor 1

 Score = 50.4 bits (121), Expect = 1e-09
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALYDYEA + DELSF+ G+ + +  K D N   WW +    K G +P N
Sbjct: 4   ALYDYEAQHPDELSFEEGDLLYISDKSDPN---WWKATCGGKTGLIPSN 49

OSTF1, also named OSF or SH3P2, is a signaling protein containing SH3 and ankyrin-repeat domains. It acts through a Src-related pathway to enhance the formation of osteoclasts and bone resorption. It also acts as a negative regulator of cell motility. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212755 cd11821, SH3_ASAP, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing proteins

 Score = 49.6 bits (119), Expect = 2e-09
 Identities = 19/37 (51%), Positives = 25/37 (67%), Gaps = 3/37 (8%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW 108
           V ALYD +A+N DEL+F  GE I+V  + D+   EWW
Sbjct: 2   VRALYDCQADNDDELTFSEGEIIVVTGEEDD---EWW 35

ASAPs are Arf GTPase activating proteins (GAPs) and they function in regulating cell growth, migration, and invasion. They contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. Vertebrates contain at least three members, ASAP1, ASAP2, and ASAP3, but some ASAP3 proteins do not seem to harbor a C-terminal SH3 domain. ASAP1 and ASAP2 show GTPase activating protein (GAP) activity towards Arf1 and Arf5. They do not show GAP activity towards Arf6, but are able to mediate Arf6 signaling by binding stably to GTP-Arf6. ASAP3 is an Arf6-specific GAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212776 cd11842, SH3_Ysc84p_like, Src homology 3 domain of Ysc84p and similar fungal proteins

 Score = 49.3 bits (118), Expect = 3e-09
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           ALYD+      +L+F+ G+ I +L+K D    +WW  ++  +EG  P N +
Sbjct: 4   ALYDFAGEQPGDLAFQKGDIITILKKSDSQN-DWWTGRIGGREGIFPANYV 53

This family is composed of the Saccharomyces cerevisiae proteins, Ysc84p (also called LAS17-binding protein 4, Lsb4p) and Lsb3p, and similar fungal proteins. They contain an N-terminal SYLF domain (also called DUF500) and a C-terminal SH3 domain. Ysc84p localizes to actin patches and plays an important in actin polymerization during endocytosis. The N-terminal domain of both Ysc84p and Lsb3p can bind and bundle actin filaments. A study of the yeast SH3 domain interactome predicts that the SH3 domains of Lsb3p and Lsb4p may function as molecular hubs for the assembly of endocytic complexes. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212757 cd11823, SH3_Nostrin, Src homology 3 domain of Nitric Oxide Synthase TRaffic INducer

 Score = 49.3 bits (118), Expect = 3e-09
 Identities = 22/49 (44%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY Y AN  DELS + G+ I V  K D+    WW  +LN K+G  P  
Sbjct: 4   ALYSYTANREDELSLQPGDIIEVHEKQDDG---WWLGELNGKKGIFPAT 49

Nostrin is expressed in endothelial and epithelial cells and is involved in the regulation, trafficking and targeting of endothelial NOS (eNOS). It facilitates the endocytosis of eNOS by coordinating the functions of dynamin and the Wiskott-Aldrich syndrome protein (WASP). Increased expression of Nostrin may be correlated to preeclampsia. Nostrin contains an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212777 cd11843, SH3_PACSIN, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 49.3 bits (118), Expect = 3e-09
 Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALYDYE   +DELSFK G+  I+ +  +E+E+ W   +L+ + G  P N
Sbjct: 2   VRALYDYEGQESDELSFKAGD--ILTKLEEEDEQGWCKGRLDGRVGLYPAN 50

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212738 cd11804, SH3_GRB2_like_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2 (GRB2) and related proteins

 Score = 48.9 bits (117), Expect = 4e-09
 Identities = 20/49 (40%), Positives = 31/49 (63%), Gaps = 2/49 (4%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           A +D++A   DELSFK G  + VL   D  +  W+ ++L+ KEG +P+N
Sbjct: 4   AKHDFKATAEDELSFKKGSILKVLNMED--DPNWYKAELDGKEGLIPKN 50

This family includes the adaptor protein GRB2 and related proteins including Drosophila melanogaster Downstream of receptor kinase (DRK), Caenorhabditis elegans Sex muscle abnormal protein 5 (Sem-5), GRB2-related adaptor protein (GRAP), GRAP2, and similar proteins. Family members contain an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. GRB2/Sem-5/DRK is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. GRAP2 plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. GRAP acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. The N-terminal SH3 domain of GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212880 cd11947, SH3_GRAP2_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 48.6 bits (116), Expect = 6e-09
 Identities = 19/51 (37%), Positives = 33/51 (64%), Gaps = 4/51 (7%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
             +D+ A+  DELSFK G+ + +L     ++  W+ ++LN +EGYVP+N +
Sbjct: 4   GKFDFTASGEDELSFKKGDVLKIL----SSDDIWFKAELNGEEGYVPKNFV 50

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also have roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212758 cd11824, SH3_PSTPIP1, Src homology 3 domain of Proline-Serine-Threonine Phosphatase-Interacting Protein 1

 Score = 48.5 bits (116), Expect = 6e-09
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
            LYDY A   DELS   G+ + V+ KG++    WW  + N ++G VP   L  
Sbjct: 4   VLYDYTAQEDDELSISKGDVVAVIEKGEDG---WWTVERNGQKGLVPGTYLEK 53

PSTPIP1, also called CD2 Binding Protein 1 (CD2BP1), is mainly expressed in hematopoietic cells. It is a binding partner of the cell surface receptor CD2 and PTP-PEST, a tyrosine phosphatase which functions in cell motility and Rac1 regulation. It also plays a role in the activation of the Wiskott-Aldrich syndrome protein (WASP), which couples actin rearrangement and T cell activation. Mutations in the gene encoding PSTPIP1 cause the autoinflammatory disorder known as PAPA (pyogenic sterile arthritis, pyoderma gangrenosum, and acne) syndrome. PSTPIP1 contains an N-terminal F-BAR domain, PEST motifs, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212760 cd11826, SH3_Abi, Src homology 3 domain of Abl Interactor proteins

 Score = 48.5 bits (116), Expect = 7e-09
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALYDY A+  DELSF+ G+ I V +K D+    W+   LN   G  P N
Sbjct: 2   VVALYDYTADKDDELSFQEGDIIYVTKKNDDG---WYEGVLNGVTGLFPGN 49

Abl interactor (Abi) proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. They localize to sites of actin polymerization in epithelial adherens junction and immune synapses, as well as to the leading edge of lamellipodia. Vertebrates contain two Abi proteins, Abi1 and Abi2. Abi1 displays a wide expression pattern while Abi2 is highly expressed in the eye and brain. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212879 cd11946, SH3_GRB2_N, N-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 48.1 bits (114), Expect = 1e-08
 Identities = 21/51 (41%), Positives = 36/51 (70%), Gaps = 2/51 (3%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           A YD++A   DELSFK G+ + VL   +E ++ W+ ++LN K+G++P+N +
Sbjct: 5   AKYDFKATADDELSFKRGDILKVL--NEECDQNWYKAELNGKDGFIPKNYI 53

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. Its N-terminal SH3 domain binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212698 cd11764, SH3_Eps8, Src Homology 3 domain of Epidermal growth factor receptor kinase substrate 8 and similar proteins

 Score = 48.0 bits (115), Expect = 1e-08
 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 9/56 (16%)

Query: 75  LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLY 127
           LYD+ A N+ ELS   GE + VL    ++ R+WW  K+ N   + GYVP N+L  Y
Sbjct: 5   LYDFTARNSKELSVLKGEYLEVL----DDSRQWW--KVRNSRGQVGYVPHNILEPY 54

This group is composed of Eps8 and Eps8-like proteins including Eps8-like 1-3, among others. These proteins contain N-terminal Phosphotyrosine-binding (PTB), central SH3, and C-terminal effector domains. Eps8 binds either Abi1 (also called E3b1) or Rab5 GTPase activating protein RN-tre through its SH3 domain. With Abi1 and Sos1, it becomes part of a trimeric complex that is required to activate Rac. Together with RN-tre, it inhibits the internalization of EGFR. The SH3 domains of Eps8 and similar proteins recognize peptides containing a PxxDY motif, instead of the classical PxxP motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212957 cd12024, SH3_NoxO1_2, Second or C-terminal Src homology 3 domain of NADPH oxidase (Nox) Organizing protein 1

 Score = 47.7 bits (114), Expect = 1e-08
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 73  YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           YA   YEA   DELS   G  + VL+K D     WW  + N + GYVP   L
Sbjct: 3   YATRAYEAQKEDELSVPAGVVVEVLQKSD---NGWWLIRYNGRAGYVPSMYL 51

Nox Organizing protein 1 (NoxO1) is a critical regulator of enzyme kinetics of the nonphagocytic NADPH oxidase Nox1, which catalyzes the transfer of electrons from NADPH to molecular oxygen to form superoxide. Nox1 is expressed in colon, stomach, uterus, prostate, and vascular smooth muscle cells. NoxO1 is involved in targeting activator subunits (such as NoxA1) to Nox1. It is co-localized with Nox1 in the membranes of resting cells and directs the subcellular localization of Nox1. NoxO1 contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), and a C-terminal proline-rich region (PRR). This model characterizes the second SH3 domain (or C-SH3) of NoxO1. The tandem SH3 domains of NoxO1 interact with the PRR of p22phox, which also complexes with Nox1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212934 cd12001, SH3_BCAR1, Src homology 3 domain of the CAS (Crk-Associated Substrate) scaffolding protein family member, Breast Cancer Anti-estrogen Resistance 1

 Score = 48.1 bits (114), Expect = 1e-08
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LLGLYPR 129
           ALYD  A + DELSF+ G+ + VL +  +    WW   L+ ++G VP N    L+G+Y +
Sbjct: 7   ALYDNVAESPDELSFRKGDIMTVLERDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYDK 66

BCAR1, also called p130cas or CASS1, is the founding member of the CAS family of scaffolding proteins and was originally identified through its ability to associate with Crk. The name BCAR1 was designated because the human gene was identified in a screen for genes that promote resistance to tamoxifen. It is widely expressed and its deletion is lethal in mice. It plays a role in regulating cell motility, survival, proliferation, transformation, cancer progression, and bacterial pathogenesis. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 68

>gnl|CDD|212737 cd11803, SH3_Endophilin_A, Src homology 3 domain of Endophilin-A

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALYD+E  N  EL FK G+ I +  + DEN   W+   +N + G+ P N
Sbjct: 5   ALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMVNGQSGFFPVN 50

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain three endophilin-A isoforms (A1, A2, and A3). Endophilin-A proteins are enriched in the brain and play multiple roles in receptor-mediated endocytosis. They tubulate membranes and regulate calcium influx into neurons to trigger the activation of the endocytic machinery. They are also involved in the sorting of plasma membrane proteins, actin filament assembly, and the uncoating of clathrin-coated vesicles for fusion with endosomes. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212936 cd12003, SH3_EFS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Embryonal Fyn-associated Substrate

 Score = 47.6 bits (113), Expect = 2e-08
 Identities = 21/55 (38%), Positives = 33/55 (60%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           ALYD  A + +ELSF+ G+ ++VL++   +   WW   L+ ++G  P N L L P
Sbjct: 5   ALYDNAAESPEELSFRRGDVLMVLKREHGSLPGWWLCSLHGQQGIAPANRLRLLP 59

EFS is also called HEFS, CASS3 (Cas scaffolding protein family member 3) or SIN (Src-interacting protein). It was identified based on interactions with the Src kinases, Fyn and Yes. It plays a role in thymocyte development and acts as a negative regulator of T cell proliferation. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|213017 cd12141, SH3_DNMBP_C2, Second C-terminal Src homology 3 domain of Dynamin Binding Protein, also called Tuba, and similar domains

 Score = 47.5 bits (113), Expect = 2e-08
 Identities = 18/54 (33%), Positives = 32/54 (59%), Gaps = 1/54 (1%)

Query: 73  YALYDYEANNTDELSFKTGECIIVLRKGDEN-EREWWWSKLNNKEGYVPRNLLG 125
           YA+Y ++A + +ELS    + + +L   D    +EWW ++ N ++GYVP N + 
Sbjct: 3   YAVYTFKARSPNELSVSANQRVRILEFSDLTGNKEWWLAEANGQKGYVPSNYIR 56

DNMBP or Tuba is a cdc42-specific guanine nucleotide exchange factor (GEF) that contains four N-terminal SH3 domains, a central RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. It provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics. It plays an important role in regulating cell junction configuration. The C-terminal SH3 domains of DNMBP bind to N-WASP and Ena/VASP proteins, which are key regulatory proteins of the actin cytoskeleton. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212809 cd11876, SH3_MLK, Src Homology 3 domain of Mixed Lineage Kinases

 Score = 47.5 bits (113), Expect = 2e-08
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 8/54 (14%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRK-----GDENEREWWWSKLNNKEGYVPRN 122
           AL+DY+A   DEL+ + G+ + VL K     GDE    WW  K+ +K G  P N
Sbjct: 4   ALFDYDARGEDELTLRRGQPVEVLSKDAAVSGDEG---WWTGKIGDKVGIFPSN 54

MLKs are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Mammals have four MLKs (MLK1-4), mostly conserved in vertebrates, which contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212810 cd11877, SH3_PIX, Src Homology 3 domain of Pak Interactive eXchange factors

 Score = 47.3 bits (113), Expect = 2e-08
 Identities = 21/52 (40%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNL 123
           V A +++E  N DELSF  G+ I V +     E  WW   LN K G+ P N 
Sbjct: 2   VRAKFNFEGTNEDELSFDKGDIITVTQV---VEGGWWEGTLNGKTGWFPSNY 50

PIX proteins are Rho guanine nucleotide exchange factors (GEFs), which activate small GTPases by exchanging bound GDP for free GTP. They act as GEFs for both Cdc42 and Rac 1, and have been implicated in cell motility, adhesion, neurite outgrowth, and cell polarity. Vertebrates contain two proteins from the PIX subfamily, alpha-PIX and beta-PIX. Alpha-PIX, also called ARHGEF6, is localized in dendritic spines where it regulates spine morphogenesis. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. Beta-PIX play roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212720 cd11786, SH3_SH3RF_1, First Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 47.0 bits (112), Expect = 2e-08
 Identities = 19/49 (38%), Positives = 31/49 (63%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY+YE     +LSFK G+ I++ ++ DEN   W+  + N K+G+ P +
Sbjct: 4   ALYNYEGKEPGDLSFKKGDIILLRKRIDEN---WYHGECNGKQGFFPAS 49

This model represents the first SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212897 cd11964, SH3_STAM1, Src homology 3 domain of Signal Transducing Adaptor Molecule 1

 Score = 46.9 bits (111), Expect = 3e-08
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           V A+YD+EA   +EL+FK G+ I +L   D N   WW  +     G  P N +
Sbjct: 3   VRAIYDFEAAEDNELTFKAGDIITILDDSDPN---WWKGETPQGTGLFPSNFV 52

STAM1 is part of the endosomal sorting complex required for transport (ESCRT-0) and is involved in sorting ubiquitinated cargo proteins from the endosome. It may also be involved in the regulation of IL2 and GM-CSF mediated signaling, and has been implicated in neural cell survival. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212883 cd11950, SH3_GRAP2_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein 2

 Score = 46.4 bits (110), Expect = 5e-08
 Identities = 23/51 (45%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALYD+EA   DEL F +G+ I VL   D +   WW  +L+ K G  P N
Sbjct: 2   VRALYDFEALEDDELGFNSGDVIEVL---DSSNPSWWKGRLHGKLGLFPAN 49

GRAP2 is also called GADS (GRB2-related adapter downstream of Shc), GrpL, GRB2L, Mona, or GRID (Grb2-related protein with insert domain). It is expressed specifically in the hematopoietic system. It plays an important role in T cell receptor (TCR) signaling by promoting the formation of the SLP-76:LAT complex, which couples the TCR to the Ras pathway. It also has roles in antigen-receptor and tyrosine kinase mediated signaling. GRAP2 is unique from other GRB2-like adaptor proteins in that it can be regulated by caspase cleavage. It contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRAP2 binds to different motifs found in substrate peptides including the typical PxxP motif in hematopoietic progenitor kinase 1 (HPK1), the RxxK motif in SLP-76 and HPK1, and the RxxxxK motif in phosphatase-like protein HD-PTP. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212762 cd11828, SH3_ARHGEF9_like, Src homology 3 domain of ARHGEF9-like Rho guanine nucleotide exchange factors

 Score = 46.2 bits (110), Expect = 5e-08
 Identities = 18/47 (38%), Positives = 31/47 (65%), Gaps = 3/47 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           AL+D+   + +EL FK G+ I VL   D ++++WWW  + ++EG+ P
Sbjct: 4   ALWDHVTMDPEELGFKAGDVIEVL---DMSDKDWWWGSIRDEEGWFP 47

Members of this family contain a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. They include the Rho guanine nucleotide exchange factors ARHGEF9, ASEF (also called ARHGEF4), ASEF2, and similar proteins. GEFs activate small GTPases by exchanging bound GDP for free GTP. ARHGEF9 specifically activates Cdc42, while both ASEF and ASEF2 can activate Rac1 and Cdc42. ARHGEF9 is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. ASEF plays a role in angiogenesis and cell migration. ASEF2 is important in cell migration and adhesion dynamics. ASEF exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli), leading to the activation of Rac1 or Cdc42. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212928 cd11995, SH3_Intersectin1_5, Fifth Src homology 3 domain (or SH3E) of Intersectin-1

 Score = 46.1 bits (109), Expect = 5e-08
 Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 3/55 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           V  +YDY A N DEL+F  G+ I VL K D    +WW  +LN + G  P N + L
Sbjct: 3   VIGMYDYTAQNDDELAFSKGQIINVLNKEDP---DWWKGELNGQVGLFPSNYVKL 54

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The fifth SH3 domain (or SH3E) of ITSN1 has been shown to bind many protein partners including SGIP1, Sos1, dynamin1/2, CIN85, c-Cbl, SHIP2, N-WASP, and synaptojanin-1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212709 cd11775, SH3_Sla1p_3, Third Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 46.2 bits (110), Expect = 6e-08
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVP 120
            LYD++A + DEL+ K G+ + +L   D+  ++WW  +     KEG VP
Sbjct: 5   VLYDFDAQSDDELTVKEGDVVYILD--DKKSKDWWMVENVSTGKEGVVP 51

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. The third SH3 domain of Sla1p can bind ubiquitin while retaining the ability to bind proline-rich ligands; monoubiquitination of target proteins signals internalization and sorting through the endocytic pathway. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212896 cd11963, SH3_STAM2, Src homology 3 domain of Signal Transducing Adaptor Molecule 2

 Score = 46.2 bits (109), Expect = 6e-08
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           V ALYD+EA   +EL+FK GE IIVL   D+++  WW  + +   G  P N +
Sbjct: 4   VRALYDFEAVEDNELTFKHGEIIIVL---DDSDANWWKGENHRGVGLFPSNFV 53

STAM2, also called EAST (Epidermal growth factor receptor-associated protein with SH3 and TAM domain) or Hbp (Hrs binding protein), is part of the endosomal sorting complex required for transport (ESCRT-0). It plays a role in sorting mono-ubiquinated endosomal cargo for trafficking to the lysosome for degradation. It is also involved in the regulation of exocytosis. STAMs were discovered as proteins that are highly phosphorylated following cytokine and growth factor stimulation. They function in cytokine signaling and surface receptor degradation, as well as regulate Golgi morphology. They associate with many proteins including Jak2 and Jak3 tyrosine kinases, Hrs, AMSH, and UBPY. STAM adaptor proteins contain VHS (Vps27, Hrs, STAM homology), ubiquitin interacting (UIM), and SH3 domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|219499 pfam07653, SH3_2, Variant SH3 domain

 Score = 45.9 bits (110), Expect = 7e-08
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
            ++DY A + +ELS K G+ + VL K D     WW  +   + G VP + +
Sbjct: 4   VIFDYVATDPNELSLKKGDVVKVLDKDDNG---WWEGERGGRRGLVPSSYV 51

SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase. The structure is a partly opened beta barrel. Length = 53

>gnl|CDD|213018 cd12142, SH3_D21-like, Src Homology 3 domain of SH3 domain-containing protein 21 (SH3D21) and similar proteins

 Score = 45.5 bits (108), Expect = 8e-08
 Identities = 20/48 (41%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 75  LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           L+DY     DEL+ K G+ I V+ K  E+E  WW  +LN + G+ P N
Sbjct: 5   LFDYNPVAPDELALKKGDVIEVISKETEDE-GWWEGELNGRRGFFPDN 51

N-terminal SH3 domain of the uncharacterized protein SH3 domain-containing protein 21, and similar uncharacterized domains, it belongs to the CD2AP-like_3 subfamily of proteins. The CD2AP-like_3 subfamily is composed of the third SH3 domain (SH3C) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3C of both proteins have been shown to bind to ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212692 cd11758, SH3_CRK_N, N-terminal Src Homology 3 domain of Ct10 Regulator of Kinase adaptor proteins

 Score = 45.4 bits (108), Expect = 9e-08
 Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 6/51 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVP 120
           V AL+D+  N+ ++L FK GE + V+RK +E     WW+  N+  K G +P
Sbjct: 3   VRALFDFPGNDDEDLPFKKGEILTVIRKPEEQ----WWNARNSEGKTGMIP 49

CRK adaptor proteins consists of SH2 and SH3 domains, which bind tyrosine-phosphorylated peptides and proline-rich motifs, respectively. They function downstream of protein tyrosine kinases in many signaling pathways started by various extracellular signals, including growth and differentiation factors. Cellular CRK (c-CRK) contains a single SH2 domain, followed by N-terminal and C-terminal SH3 domains. It is involved in the regulation of many cellular processes including cell growth, motility, adhesion, and apoptosis. CRK has been implicated in the malignancy of various human cancers. The N-terminal SH3 domain of CRK binds a number of target proteins including DOCK180, C3G, SOS, and cABL. The CRK family includes two alternatively spliced protein forms, CRKI and CRKII, that are expressed by the CRK gene, and the CRK-like (CRKL) protein, which is expressed by a distinct gene (CRKL). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212881 cd11948, SH3_GRAP_N, N-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 45.6 bits (108), Expect = 1e-07
 Identities = 18/53 (33%), Positives = 36/53 (67%), Gaps = 2/53 (3%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           ALY ++A  +DEL F+ G+ + +L    E+++ W+ ++L  +EGY+P+N + +
Sbjct: 4   ALYSFQATESDELPFQKGDILKILNM--EDDQNWYKAELQGREGYIPKNYIKV 54

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The N-terminal SH3 domain of the related protein GRB2 binds to Sos and Sos-derived proline-rich peptides. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212882 cd11949, SH3_GRB2_C, C-terminal Src homology 3 domain of Growth factor receptor-bound protein 2

 Score = 45.2 bits (107), Expect = 1e-07
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 71  AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
            V AL+D++     EL F+ G+ I V+   D N   WW    + + G  PRN
Sbjct: 1   YVQALFDFDPQEDGELGFRRGDFIEVMDNSDPN---WWKGACHGQTGMFPRN 49

GRB2 is a critical signaling molecule that regulates the Ras pathway by linking tyrosine kinases to the Ras guanine nucleotide releasing protein Sos (son of sevenless), which converts Ras to the active GTP-bound state. It is ubiquitously expressed in all tissues throughout development and is important in cell cycle progression, motility, morphogenesis, and angiogenesis. In lymphocytes, GRB2 is associated with antigen receptor signaling components. GRB2 contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domain of GRB2 binds to Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, as well as to the proline-rich C-terminus of FGRF2. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212919 cd11986, SH3_Stac3_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 3 (Stac3)

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 21/51 (41%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           ALY ++A   D+L F  GE I V+   D++  EWW  K+  K GY P N +
Sbjct: 4   ALYRFKALEKDDLDFHPGERITVI---DDSNEEWWRGKIGEKTGYFPMNFI 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212696 cd11762, SH3_FCHSD_2, Second Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 45.1 bits (107), Expect = 2e-07
 Identities = 23/50 (46%), Positives = 29/50 (58%), Gaps = 1/50 (2%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNKEGYVP 120
           V ALYDYEA + +ELSF  G  I +LRK D    + WW  + N + G  P
Sbjct: 2   VRALYDYEAQSDEELSFPEGAIIRILRKDDNGVDDGWWEGEFNGRVGVFP 51

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212778 cd11844, SH3_CAS, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding proteins

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 20/53 (37%), Positives = 28/53 (52%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           ALYD  A + DEL+F+ G+ + VL +       WW   L  ++G  P N L L
Sbjct: 4   ALYDNVAESPDELAFRRGDILTVLEQNTAGLEGWWLCSLRGRQGIAPGNRLKL 56

CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes including migration, chemotaxis, apoptosis, differentiation, and progenitor cell function. They mediate the signaling of integrins at focal adhesions where they localize, and thus, regulate cell invasion and survival. Over-expression of these proteins is implicated in poor prognosis, increased metastasis, and resistance to chemotherapeutics in many cancers such as breast, lung, melanoma, and glioblastoma. CAS proteins have also been linked to the pathogenesis of inflammatory disorders, Alzheimer's, Parkinson's, and developmental defects. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. Vertebrates contain four CAS proteins: BCAR1 (or p130Cas), NEDD9 (or HEF1), EFS (or SIN), and CASS4 (or HEPL). The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212742 cd11808, SH3_Alpha_Spectrin, Src homology 3 domain of Alpha Spectrin

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 17/53 (32%), Positives = 34/53 (64%), Gaps = 3/53 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           V ALYDY+  +  E+S K G+ + +L   + + ++WW  ++N+++G+VP   +
Sbjct: 2   VVALYDYQEKSPREVSMKKGDILTLL---NSSNKDWWKVEVNDRQGFVPAAYV 51

Spectrin is a major structural component of the red blood cell membrane skeleton and is important in erythropoiesis and membrane biogenesis. It is a flexible, rope-like molecule composed of two subunits, alpha and beta, which consist of many spectrin-type repeats. Alpha and beta spectrin associate to form heterodimers and tetramers; spectrin tetramer formation is critical for red cell shape and deformability. Defects in alpha spectrin have been associated with inherited hemolytic anemias including hereditary spherocytosis (HSp), hereditary elliptocytosis (HE), and hereditary pyropoikilocytosis (HPP). Alpha spectrin contains a middle SH3 domain and a C-terminal EF-hand binding motif in addition to multiple spectrin repeats. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212807 cd11874, SH3_CD2AP-like_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein and similar proteins

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 22/49 (44%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
            L+ Y   N DEL  K G+ I VL    E E  WW  KLN K G  P N
Sbjct: 4   VLFSYTPQNEDELELKVGDTIEVL---GEVEEGWWEGKLNGKVGVFPSN 49

This subfamily is composed of the second SH3 domain (SH3B) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3B of both proteins have been shown to bind to Cbl. In the case of CD2AP, its SH3B binds to Cbl at a site distinct from the c-Cbl/SH3A binding site. The CIN85 SH3B also binds ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212992 cd12059, SH3_MLK1-3, Src Homology 3 domain of Mixed Lineage Kinases 1, 2, and 3

 Score = 44.8 bits (106), Expect = 2e-07
 Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 8/54 (14%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRK-----GDENEREWWWSKLNNKEGYVPRN 122
           A++DYEA+  DEL+ + G+ + VL K     GDE    WW  K+N++ G  P N
Sbjct: 4   AVFDYEASAEDELTLRRGDRVEVLSKDSAVSGDEG---WWTGKINDRVGIFPSN 54

MLKs 1, 2, and 3 are Serine/Threonine Kinases (STKs), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. Little is known about the specific function of MLK1, also called MAP3K9. It is capable of activating the c-Jun N-terminal kinase pathway. Mice lacking both MLK1 and MLK2 are viable, fertile, and have normal life spans. MLK2, also called MAP3K10, is abundant in brain, skeletal muscle, and testis. It functions upstream of the MAPK, c-Jun N-terminal kinase. It binds hippocalcin, a calcium-sensor protein that protects neurons against calcium-induced cell death. Both MLK2 and hippocalcin may be associated with the pathogenesis of Parkinson's disease. MLK3, also called MAP3K11, is highly expressed in breast cancer cells and its signaling through c-Jun N-terminal kinase has been implicated in the migration, invasion, and malignancy of cancer cells. It also functions as a negative regulator of Inhibitor of Nuclear Factor-KappaB Kinase (IKK) and thus, impacts inflammation and immunity. MLKs contain an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212781 cd11847, SH3_Brk, Src homology 3 domain of Brk (Breast tumor kinase) Protein Tyrosine Kinase (PTK), also called PTK6

 Score = 44.9 bits (106), Expect = 2e-07
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 10/57 (17%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK------EGYVPRNLL 124
           AL+D++A   +ELSF+ G+   +  +      +WW +   ++      +G+VP N L
Sbjct: 4   ALWDFKARGDEELSFQAGDQFRIAER----SGDWWTALKLDRAGGVVAQGFVPNNYL 56

Brk is a cytoplasmic (or non-receptor) PTK with limited homology to Src kinases. It has been found to be overexpressed in a majority of breast tumors. It plays roles in normal cell differentiation, proliferation, survival, migration, and cell cycle progression. Brk substrates include RNA-binding proteins (SLM-1/2, Sam68), transcription factors (STAT3/5), and signaling molecules (Akt, paxillin, IRS-4). Src kinases in general contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr; they are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation site. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212937 cd12004, SH3_Lyn, Src homology 3 domain of Lyn Protein Tyrosine Kinase

 Score = 44.6 bits (105), Expect = 2e-07
 Identities = 22/53 (41%), Positives = 31/53 (58%), Gaps = 6/53 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 122
           V ALY Y+  + D+LSFK GE + V+    E   EWW ++     KEG++P N
Sbjct: 2   VVALYPYDGIHEDDLSFKKGEKLKVI----EEHGEWWKARSLTTKKEGFIPSN 50

Lyn is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lyn is expressed in B lymphocytes and myeloid cells. It exhibits both positive and negative regulatory roles in B cell receptor (BCR) signaling. Lyn, as well as Fyn and Blk, promotes B cell activation by phosphorylating ITAMs (immunoreceptor tyr activation motifs) in CD19 and in Ig components of BCR. It negatively regulates signaling by its unique ability to phosphorylate ITIMs (immunoreceptor tyr inhibition motifs) in cell surface receptors like CD22 and CD5. Lyn also plays an important role in G-CSF receptor signaling by phosphorylating a variety of adaptor molecules. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212752 cd11818, SH3_Eve1_5, Fifth Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 44.4 bits (105), Expect = 2e-07
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALYD+   N DELSFK G+ I  L   DE   EW   +L  K G  P+N
Sbjct: 4   ALYDFTGENEDELSFKAGDIITELESIDE---EWMSGELRGKSGIFPKN 49

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212940 cd12007, SH3_Yes, Src homology 3 domain of Yes Protein Tyrosine Kinase

 Score = 44.6 bits (105), Expect = 2e-07
 Identities = 22/51 (43%), Positives = 31/51 (60%), Gaps = 5/51 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVPRN 122
           ALYDYEA  T++LSFK GE   ++   +  E +WW ++     K GY+P N
Sbjct: 5   ALYDYEARTTEDLSFKKGERFQII---NNTEGDWWEARSIATGKNGYIPSN 52

Yes (or c-Yes) is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. c-Yes kinase is the cellular homolog of the oncogenic protein (v-Yes) encoded by the Yamaguchi 73 and Esh sarcoma viruses. It displays functional overlap with other Src subfamily members, particularly Src. It also shows some unique functions such as binding to occludins, transmembrane proteins that regulate extracellular interactions in tight junctions. Yes also associates with a number of proteins in different cell types that Src does not interact with, like JAK2 and gp130 in pre-adipocytes, and Pyk2 in treated pulmonary vein endothelial cells. Although the biological function of Yes remains unclear, it appears to have a role in regulating cell-cell interactions and vesicle trafficking in polarized cells. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212695 cd11761, SH3_FCHSD_1, First Src Homology 3 domain of FCH and double SH3 domains proteins

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 23/54 (42%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK---EGYVPRNLL 124
            LY YEA   DEL+   GE + V+  GD +     W K  NK    GYVP N L
Sbjct: 6   VLYSYEAQRPDELTITEGEELEVIEDGDGDG----WVKARNKSGEVGYVPENYL 55

This group is composed of FCH and double SH3 domains protein 1 (FCHSD1) and FCHSD2. These proteins have a common domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. They have only been characterized in silico and their functions remain unknown. This group also includes the insect protein, nervous wreck, which acts as a regulator of synaptic growth signaling. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212991 cd12058, SH3_MLK4, Src Homology 3 domain of Mixed Lineage Kinase 4

 Score = 44.2 bits (104), Expect = 3e-07
 Identities = 22/54 (40%), Positives = 31/54 (57%), Gaps = 8/54 (14%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRK-----GDENEREWWWSKLNNKEGYVPRN 122
           ALYDYEA+  DELS + G+ + VL +     GD+    WW  K+ ++ G  P N
Sbjct: 4   ALYDYEASGEDELSLRRGDVVEVLSQDAAVSGDDG---WWAGKIRHRLGIFPAN 54

MLK4 is a Serine/Threonine Kinase (STK), catalyzing the transfer of the gamma-phosphoryl group from ATP to S/T residues on protein substrates. MLKs act as mitogen-activated protein kinase kinase kinases (MAP3Ks, MKKKs, MAPKKKs), which phosphorylate and activate MAPK kinases (MAPKKs or MKKs or MAP2Ks), which in turn phosphorylate and activate MAPKs during signaling cascades that are important in mediating cellular responses to extracellular signals. MLKs play roles in immunity and inflammation, as well as in cell death, proliferation, and cell cycle regulation. The specific function of MLK4 is yet to be determined. Mutations in the kinase domain of MLK4 have been detected in colorectal cancers. MLK4 contains an SH3 domain, a catalytic kinase domain, a leucine zipper, a proline-rich region, and a CRIB domain that mediates binding to GTP-bound Cdc42 and Rac. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212906 cd11973, SH3_ASEF, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor

 Score = 44.6 bits (105), Expect = 4e-07
 Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           AL+D+   +  EL FK G+ I V+   D   +EWWW ++ + EG+ P + + L
Sbjct: 22  ALWDHVTMDDQELGFKAGDVIEVM---DATNKEWWWGRVLDSEGWFPASFVRL 71

ASEF, also called ARHGEF4, exists in an autoinhibited form and is activated upon binding of the tumor suppressor APC (adenomatous polyposis coli). GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF can activate Rac1 or Cdc42. Truncated ASEF, which is found in colorectal cancers, is constitutively active and has been shown to promote angiogenesis and cancer cell migration. ASEF contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. In its autoinhibited form, the SH3 domain of ASEF forms an extensive interface with the DH and PH domains, blocking the Rac binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 73

>gnl|CDD|212908 cd11975, SH3_ARHGEF9, Src homology 3 domain of the Rho guanine nucleotide exchange factor ARHGEF9

 Score = 44.3 bits (104), Expect = 4e-07
 Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 3/54 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127
           A++D+      EL+FK G+ I VL   D + ++WWW +++++EG+ P + + L+
Sbjct: 9   AVWDHVTMANRELAFKAGDVIKVL---DASNKDWWWGQIDDEEGWFPASFVRLW 59

ARHGEF9, also called PEM2 or collybistin, selectively activates Cdc42 by exchanging bound GDP for free GTP. It is highly expressed in the brain and it interacts with gephyrin, a postsynaptic protein associated with GABA and glycine receptors. Mutations in the ARHGEF9 gene cause X-linked mental retardation with associated features like seizures, hyper-anxiety, aggressive behavior, and sensory hyperarousal. ARHGEF9 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212792 cd11858, SH3_Myosin-I_fungi, Src homology 3 domain of Type I fungal Myosins

 Score = 43.9 bits (104), Expect = 4e-07
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVPRNLL 124
           ALYD+  +  +ELS K  + + +++K    +  WW +K  +  KEG+VP   L
Sbjct: 4   ALYDFAGSVANELSLKKDDIVYIVQK---EDNGWWLAKKLDESKEGWVPAAYL 53

Type I myosins (myosin-I) are actin-dependent motors in endocytic actin structures and actin patches. They play roles in membrane traffic in endocytic and secretory pathways, cell motility, and mechanosensing. Saccharomyces cerevisiae has two myosins-I, Myo3 and Myo5, which are involved in endocytosis and the polarization of the actin cytoskeleton. Myosin-I contains an N-terminal actin-activated ATPase, a phospholipid-binding TH1 (tail homology 1) domain, and a C-terminal extension which includes an F-actin-binding TH2 domain, an SH3 domain, and an acidic peptide that participates in activating the Arp2/3complex. The SH3 domain of myosin-I is required for myosin-I-induced actin polymerization. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212705 cd11771, SH3_Pex13p_fungal, Src Homology 3 domain of fungal peroxisomal membrane protein Pex13p

 Score = 43.8 bits (104), Expect = 5e-07
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 4/53 (7%)

Query: 74  ALYDYE-ANNTDELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRN 122
           ALYD+   N   ELS K G+ + VL K D    + EWW  +  + + G+ P N
Sbjct: 4   ALYDFTPENPEMELSLKKGDIVAVLSKTDPLGRDSEWWKGRTRDGRIGWFPSN 56

Pex13p, located in the peroxisomal membrane, contains two transmembrane regions and a C-terminal SH3 domain. It binds to the peroxisomal targeting type I (PTS1) receptor Pex5p and the docking factor Pex14p through its SH3 domain. It is essential for both PTS1 and PTS2 protein import pathways into the peroxisomal matrix. Pex13p binds Pex14p, which contains a PxxP motif, in a classical fashion to the proline-rich ligand binding site of its SH3 domain. It binds the WxxxF/Y motif of Pex5p in a novel site that does not compete with Pex14p binding. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 60

>gnl|CDD|212811 cd11878, SH3_Bem1p_1, First Src Homology 3 domain of Bud emergence protein 1 and similar domains

 Score = 43.4 bits (103), Expect = 6e-07
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWW--WSKLNNKEGYVPRN 122
           ALYDY A    ELSF  G+   V+  G+E++ EW+   + +  K G VP++
Sbjct: 4   ALYDYRAQTPGELSFSKGDFFHVI--GEEDQGEWYEATNPVTGKRGLVPKS 52

Members of this subfamily bear similarity to Saccharomyces cerevisiae Bem1p, containing two Src Homology 3 (SH3) domains at the N-terminus, a central PX domain, and a C-terminal PB1 domain. Bem1p is a scaffolding protein that is critical for proper Cdc42p activation during bud formation in yeast. During budding and mating, Bem1p migrates to the plasma membrane where it can serve as an adaptor for Cdc42p and some other proteins. Bem1p also functions as an effector of the G1 cyclin Cln3p and the cyclin-dependent kinase Cdc28p in promoting vacuolar fusion. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212716 cd11782, SH3_Sorbs_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 43.1 bits (102), Expect = 7e-07
 Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           A Y++ A+   ELSF+ G+ I + R+ DEN   W+  ++  ++G  P
Sbjct: 4   AKYNFNADTGVELSFRKGDVITLTRRVDEN---WYEGRIGGRQGIFP 47

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the second SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212884 cd11951, SH3_GRAP_C, C-terminal Src homology 3 domain of GRB2-related adaptor protein

 Score = 43.3 bits (102), Expect = 8e-07
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A YD+ A +  +LSF+ G+ I VL   D N   WW  +++ + G+ PRN
Sbjct: 2   VQAQYDFSAEDPSQLSFRRGDIIEVLDCPDPN---WWRGRISGRVGFFPRN 49

GRAP is a GRB-2 like adaptor protein that is highly expressed in lymphoid tissues. It acts as a negative regulator of T cell receptor (TCR)-induced lymphocyte proliferation by downregulating the signaling to the Ras/ERK pathway. It has been identified as a regulator of TGFbeta signaling in diabetic kidney tubules and may have a role in the pathogenesis of the disease. GRAP contains an N-terminal SH3 domain, a central SH2 domain, and a C-terminal SH3 domain. The C-terminal SH3 domains (SH3c) of the related proteins, GRB2 and GRAP2, have been shown to bind to classical PxxP motif ligands, as well as to non-classical motifs. GRB2 SH3c binds Gab2 (Grb2-associated binder 2) through epitopes containing RxxK motifs, while the SH3c of GRAP2 binds to the phosphatase-like protein HD-PTP via a RxxxxK motif. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212979 cd12046, SH3_p67phox_C, C-terminal (or second) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 43.3 bits (102), Expect = 8e-07
 Identities = 18/50 (36%), Positives = 28/50 (56%), Gaps = 3/50 (6%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 121
           V AL+ YEA+  ++L F+ G+ I+VL K +E   +W   +   K G  P 
Sbjct: 2   VVALFSYEASQPEDLEFQKGDVILVLSKVNE---DWLEGQCKGKIGIFPS 48

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212933 cd12000, SH3_CASS4, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member 4

 Score = 42.9 bits (101), Expect = 8e-07
 Identities = 20/53 (37%), Positives = 31/53 (58%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           ALYD +A+ +DEL+F+ G+ + VL +       WW   L+ ++G  P N L L
Sbjct: 5   ALYDNKADCSDELAFRRGDILTVLEQNVPGSEGWWKCLLHGRQGLAPANRLQL 57

CASS4, also called HEPL (HEF1-EFS-p130Cas-like), localizes to focal adhesions and plays a role in regulating FAK activity, focal adhesion integrity, and cell spreading. It is most abundant in blood cells and lung tissue, and is also found in high levels in leukemia and ovarian cell lines. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212931 cd11998, SH3_PACSIN1-2, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 1 (PACSIN1) and PACSIN 2

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 9/57 (15%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           V ALYDY+    DELSFK G+ +  L   DE+E+ W   +L++ +       +GLYP
Sbjct: 3   VRALYDYDGQEQDELSFKAGDELTKL--EDEDEQGWCKGRLDSGQ-------VGLYP 50

PACSIN 1 or Syndapin I (Synaptic dynamin-associated protein I) is expressed specifically in the brain and is localized in neurites and synaptic boutons. It binds the brain-specific proteins dynamin I, synaptojanin, synapsin I, and neural Wiskott-Aldrich syndrome protein (nWASP), and functions as a link between the cytoskeletal machinery and synaptic vesicle endocytosis. PACSIN 1 interacts with huntingtin and may be implicated in the neuropathology of Huntington's disease. PACSIN 2 or Syndapin II is expressed ubiquitously and is involved in the regulation of tubulin polymerization. It associates with Golgi membranes and forms a complex with dynamin II which is crucial in promoting vesicle formation from the trans-Golgi network. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212990 cd12057, SH3_CIN85_3, Third Src Homology 3 domain (SH3C) of Cbl-interacting protein of 85 kDa

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 75  LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           L+ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N + L
Sbjct: 5   LFPYEAQNEDELTIKEGDIVTLISK-DCIDAGWWEGELNGRRGVFPDNFVKL 55

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the third SH3 domain (SH3C) of CIN85. SH3C has been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212806 cd11873, SH3_CD2AP-like_1, First Src Homology 3 domain (SH3A) of CD2-associated protein and similar proteins

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V   +DY+A   DEL+ K G+ I  ++K +E    WW   LN K G  P N
Sbjct: 2   VIVEFDYDAEEPDELTLKVGDIITNVKKMEEG---WWEGTLNGKRGMFPDN 49

This subfamily is composed of the first SH3 domain (SH3A) of CD2AP, CIN85 (Cbl-interacting protein of 85 kDa), and similar domains. CD2AP and CIN85 are adaptor proteins that bind to protein partners and assemble complexes that have been implicated in T cell activation, kidney function, and apoptosis of neuronal cells. They also associate with endocytic proteins, actin cytoskeleton components, and other adaptor proteins involved in receptor tyrosine kinase (RTK) signaling. CD2AP and the main isoform of CIN85 contain three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP and CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. SH3A of both proteins bind to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic domain of the cell adhesion protein CD2. CIN85 SH3A binds to internal proline-rich motifs within the proline-rich region; this intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. CIN85 SH3A has also been shown to bind ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212800 cd11866, SH3_SKAP1-like, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1 and similar proteins

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
            L+D   N  DELSFK G+ I ++ K + +   WW  +LN K G VP++ L
Sbjct: 4   GLWDCSGNEPDELSFKRGDLIYIISK-EYDSFGWWVGELNGKVGLVPKDYL 53

This subfamily is composed of SKAP1, SKAP2, and similar proteins. SKAP1 and SKAP2 are immune cell-specific adaptor proteins that play roles in T- and B-cell adhesion, respectively, and are thus important in the migration of T- and B-cells to sites of inflammation and for movement during T-cell conjugation with antigen-presenting cells. Both SKAP1 and SKAP2 bind to ADAP (adhesion and degranulation-promoting adaptor protein), among many other binding partners. They contain a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212907 cd11974, SH3_ASEF2, Src homology 3 domain of APC-Stimulated guanine nucleotide Exchange Factor 2

 Score = 42.0 bits (98), Expect = 2e-06
 Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           AL+D+   +  EL+FK G+ I VL   + + ++WWW +  ++E + P + + L
Sbjct: 5   ALWDHVTMDDQELAFKAGDVIRVL---EASNKDWWWGRNEDREAWFPASFVRL 54

ASEF2, also called Spermatogenesis-associated protein 13 (SPATA13), is a GEF that localizes with actin at the leading edge of cells and is important in cell migration and adhesion dynamics. GEFs activate small GTPases by exchanging bound GDP for free GTP. ASEF2 can activate both Rac 1 and Cdc42, but only Rac1 activation is necessary for increased cell migration and adhesion turnover. Together with APC (adenomatous polyposis coli) and Neurabin2, a scaffold protein that binds F-actin, it is involved in regulating HGF-induced cell migration. ASEF2 contains a SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212946 cd12013, SH3_RIM-BP_3, Third Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 22/58 (37%), Positives = 33/58 (56%), Gaps = 9/58 (15%)

Query: 74  ALYDYEAN----NTD---ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           AL+DY+      N D   ELSF+ G+ I V   G+ +E  +++ +LN + G VP N L
Sbjct: 4   ALFDYDPRESSPNVDAEVELSFRAGDIITVF--GEMDEDGFYYGELNGQRGLVPSNFL 59

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212827 cd11894, SH3_FCHSD2_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 2

 Score = 41.8 bits (98), Expect = 2e-06
 Identities = 21/53 (39%), Positives = 30/53 (56%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           V ALYDYE    DELSF  G  I +L K ++++  +W  + N + G  P  L+
Sbjct: 2   VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 54

FCHSD2 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212945 cd12012, SH3_RIM-BP_2, Second Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 10/58 (17%)

Query: 74  ALYDYEAN----NTD----ELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNL 123
           AL+DY+      N D    EL FK G+ I V   GD++   ++  ++N + G VP N+
Sbjct: 4   ALFDYDPLTMSPNPDAAEEELPFKEGQLIKVY--GDKDADGFYLGEINGRRGLVPCNM 59

RIMs binding proteins (RBPs, RIM-BPs) associate with calcium channels present in photoreceptors, neurons, and hair cells; they interact simultaneously with specific calcium channel subunits, and active zone proteins, RIM1 and RIM2. RIMs are part of the matrix at the presynaptic active zone and are associated with synaptic vesicles through their interaction with the small GTPase Rab3. RIM-BPs play a role in regulating synaptic transmission by serving as adaptors and linking calcium channels with the synaptic vesicle release machinery. RIM-BPs contain three SH3 domains and two to three fibronectin III repeats. Invertebrates contain one, while vertebrates contain at least two RIM-BPs, RIM-BP1 and RIM-BP2. RIM-BP1 is also called peripheral-type benzodiazapine receptor associated protein 1 (PRAX-1). Mammals contain a third protein, RIM-BP3. RIM-BP1 and RIM-BP2 are predominantly expressed in the brain where they display overlapping but distinct expression patterns, while RIM-BP3 is almost exclusively expressed in the testis and is essential in spermiogenesis. The SH3 domains of RIM-BPs bind to the PxxP motifs of RIM1, RIM2, and L-type (alpha1D) and N-type (alpha1B) calcium channel subunits. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 62

>gnl|CDD|212837 cd11904, SH3_Nck1_3, Third Src Homology 3 domain of Nck1 adaptor protein

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 23/52 (44%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW-WSKLNNKEGYVPRN 122
           V ALY + ++N +EL+F+ GE + V+ K  EN+ EWW   K N + G VP+N
Sbjct: 3   VQALYPFSSSNDEELNFEKGEVMDVIEK-PENDPEWWKCRKANGQVGLVPKN 53

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212701 cd11767, SH3_Nck_3, Third Src Homology 3 domain of Nck adaptor proteins

 Score = 41.9 bits (99), Expect = 2e-06
 Identities = 20/53 (37%), Positives = 31/53 (58%), Gaps = 2/53 (3%)

Query: 71  AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRN 122
            V ALY +   N +ELSF+ GE + ++ K  E++ +WW ++      G VPRN
Sbjct: 1   VVVALYPFTGENDEELSFEKGERLEIIEK-PEDDPDWWKARNALGTTGLVPRN 52

This group contains the third SH3 domain of Nck, the first SH3 domain of Caenorhabditis elegans Ced-2 (Cell death abnormality protein 2), and similar domains. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. Ced-2 is a cell corpse engulfment protein that interacts with Ced-5 in a pathway that regulates the activation of Ced-10, a Rac small GTPase. Length = 56

>gnl|CDD|212697 cd11763, SH3_SNX9_like, Src Homology 3 domain of Sorting Nexin 9 and similar proteins

 Score = 41.9 bits (99), Expect = 2e-06
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 5/51 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVP 120
           V ALYD+++  + ELS + GE + + R   ++  + W    N+  + G  P
Sbjct: 2   VRALYDFDSQPSGELSLRAGEVLTITR---QDVGDGWLEGRNSRGEVGLFP 49

Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. This subfamily consists of SH3 domain containing SNXs including SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212839 cd11906, SH3_BTK, Src Homology 3 domain of Bruton's tyrosine kinase

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
           V ALYDY   N  +L  + GE  ++L + +     WW ++  N +EGY+P N
Sbjct: 3   VVALYDYTPMNAQDLQLRKGEEYVILEESNLP---WWRARDKNGREGYIPSN 51

BTK is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain with proline-rich and zinc-binding regions. Btk is expressed in B-cells, and a variety of myeloid cells including mast cells, platelets, neutrophils, and dendrictic cells. It interacts with a variety of partners, from cytosolic proteins to nuclear transcription factors, suggesting a diversity of functions. Stimulation of a diverse array of cell surface receptors, including antigen engagement of the B-cell receptor (BCR), leads to PH-mediated membrane translocation of Btk and subsequent phosphorylation by Src kinase and activation. Btk plays an important role in the life cycle of B-cells including their development, differentiation, proliferation, survival, and apoptosis. Mutations in Btk cause the primary immunodeficiency disease, X-linked agammaglobulinaemia (XLA) in humans. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212707 cd11773, SH3_Sla1p_1, First Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 41.6 bits (98), Expect = 3e-06
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-------NKEGYVPRN 122
           ALYDYE    DEL+ +  + + +L K D+   +WW  KL           G VP  
Sbjct: 4   ALYDYEPQTEDELTIQEDDILYLLEKSDD---DWWKVKLKVNSSDDDEPVGLVPAT 56

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212753 cd11819, SH3_Cortactin_like, Src homology 3 domain of Cortactin and related proteins

 Score = 41.5 bits (98), Expect = 4e-06
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           ALYDY+A   +E+SF  G+ I  + + DE    WW        G   +   GL+P
Sbjct: 4   ALYDYQAAEDNEISFVEGDIITQIEQIDEG---WW-------LGVNAKGQKGLFP 48

This subfamily includes cortactin, Abp1 (actin-binding protein 1), hematopoietic lineage cell-specific protein 1 (HS1), and similar proteins. These proteins are involved in regulating actin dynamics through direct or indirect interaction with the Arp2/3 complex, which is required to initiate actin polymerization. They all contain at least one C-terminal SH3 domain. Cortactin and HS1 bind Arp2/3 and actin through an N-terminal region that contains an acidic domain and several copies of a repeat domain found in cortactin and HS1. Abp1 binds actin via an N-terminal actin-depolymerizing factor (ADF) homology domain. Yeast Abp1 binds Arp2/3 directly through two acidic domains. Mammalian Abp1 does not directly interact with Arp2/3; instead, it regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. The C-terminal region of these proteins acts as an adaptor or scaffold that can connect membrane trafficking and signaling proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212712 cd11778, SH3_Bzz1_2, Second Src Homology 3 domain of Bzz1 and similar domains

 Score = 41.3 bits (97), Expect = 4e-06
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 2/52 (3%)

Query: 71  AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
            V ALYDYEA   DE+S + G+ I V+R  D +   W + ++N  +G  P +
Sbjct: 1   YVEALYDYEAQGDDEISIRVGDRIAVIRGDDGS--GWTYGEINGVKGLFPTS 50

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the second C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212775 cd11841, SH3_SH3YL1_like, Src homology 3 domain of SH3 domain containing Ysc84-like 1 (SH3YL1) protein

 Score = 41.2 bits (97), Expect = 4e-06
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALY +E     +LSF+ G+ I VL + D ++ +WW  +L  + G  P N
Sbjct: 2   VTALYSFEGQQPCDLSFQAGDRITVLTRTD-SQFDWWEGRLRGRVGIFPAN 51

SH3YL1 localizes to the plasma membrane and is required for dorsal ruffle formation. It binds phosphoinositides (PIs) with high affinity through its N-terminal SYLF domain (also called DUF500). In addition, SH3YL1 contains a C-terminal SH3 domain which has been reported to bind to N-WASP, dynamin 2, and SHIP2 (a PI 5-phosphatase). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212770 cd11836, SH3_Intersectin_1, First Src homology 3 domain (or SH3A) of Intersectin

 Score = 41.2 bits (97), Expect = 4e-06
 Identities = 20/49 (40%), Positives = 26/49 (53%), Gaps = 1/49 (2%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY +EA N DE+SF+ G+ I V       E  W   +L  K G+ P N
Sbjct: 4   ALYAFEARNPDEISFQPGDIIQVDES-QVAEPGWLAGELKGKTGWFPAN 51

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The first SH3 domain (or SH3A) of ITSN1 has been shown to bind many proteins including Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212892 cd11959, SH3_Cortactin, Src homology 3 domain of Cortactin

 Score = 41.2 bits (97), Expect = 4e-06
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           ALYDY+A + DE+SF   + I  +   DE    WW      K G  P N + L
Sbjct: 4   ALYDYQAADDDEISFDPDDIITNIEMIDEG---WWRGVCRGKYGLFPANYVEL 53

Cortactin was originally identified as a substrate of Src kinase. It is an actin regulatory protein that binds to the Arp2/3 complex and stabilizes branched actin filaments. It is involved in cellular processes that affect cell motility, adhesion, migration, endocytosis, and invasion. It is expressed ubiquitously except in hematopoietic cells, where the homolog hematopoietic lineage cell-specific 1 (HS1) is expressed instead. Cortactin contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region interacts with the Arp2/3 complex and F-actin, and is crucial in regulating branched actin assembly. Cortactin also serves as a scaffold and provides a bridge to the actin cytoskeleton for membrane trafficking and signaling proteins that bind to its SH3 domain. Binding partners for the SH3 domain of cortactin include dynamin2, N-WASp, MIM, FGD1, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212942 cd12009, SH3_Blk, Src homology 3 domain of Blk Protein Tyrosine Kinase

 Score = 41.0 bits (96), Expect = 5e-06
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 122
           V A YD+  +N  +L  K GE + VL+     + EWW +K     KEGY+P N
Sbjct: 2   VIAQYDFVPSNERDLQLKKGEKLQVLKS----DGEWWLAKSLTTGKEGYIPSN 50

Blk is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. It is expressed specifically in B-cells and is involved in pre-BCR (B-cell receptor) signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212938 cd12005, SH3_Lck, Src homology 3 domain of Lck Protein Tyrosine Kinase

 Score = 41.0 bits (96), Expect = 5e-06
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 6/55 (10%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
           V ALY YE ++  +L F+ GE + +L    E   EWW ++     +EG++P N +
Sbjct: 2   VVALYSYEPSHDGDLGFEKGEKLRIL----EQSGEWWKAQSLTTGQEGFIPFNFV 52

Lck is a member of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Lck is expressed in T-cells and natural killer cells. It plays a critical role in T-cell maturation, activation, and T-cell receptor (TCR) signaling. Lck phosphorylates ITAM (immunoreceptor tyr activation motif) sequences on several subunits of TCRs, leading to the activation of different second messenger cascades. Phosphorylated ITAMs serve as binding sites for other signaling factor such as Syk and ZAP-70, leading to their activation and propagation of downstream events. In addition, Lck regulates drug-induced apoptosis by interfering with the mitochondrial death pathway. The apototic role of Lck is independent of its primary function in T-cell signaling. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212935 cd12002, SH3_NEDD9, Src homology 3 domain of CAS (Crk-Associated Substrate) scaffolding protein family member, Neural precursor cell Expressed, Developmentally Down-regulated 9

 Score = 41.1 bits (96), Expect = 5e-06
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           ALYD      +EL+F+ G+ + V+ +       WW   L+ ++G  P N L L
Sbjct: 4   ALYDNVPECAEELAFRKGDILTVIEQNTGGLEGWWLCSLHGRQGIAPGNRLKL 56

NEDD9 is also called human enhancer of filamentation 1 (HEF1) or CAS-L (Crk-associated substrate in lymphocyte). It was first described as a gene predominantly expressed in early embryonic brain, and was also isolated from a screen of human proteins that regulate filamentous budding in yeast, and as a tyrosine phosphorylated protein in lymphocytes. It promotes metastasis in different solid tumors. NEDD9 localizes in focal adhesions and associates with FAK and Abl kinase. It also interacts with SMAD3 and the proteasomal machinery which allows its rapid turnover; these interactions are not shared by other CAS proteins. CAS proteins function as molecular scaffolds to regulate protein complexes that are involved in many cellular processes. They share a common domain structure that includes an N-terminal SH3 domain, an unstructured substrate domain that contains many YxxP motifs, a serine-rich four-helix bundle, and a FAT-like C-terminal domain. The SH3 domain of CAS proteins binds to diverse partners including FAK, FRNK, Pyk2, PTP-PEST, DOCK180, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212721 cd11787, SH3_SH3RF_2, Second Src Homology 3 domain of SH3 domain containing ring finger proteins

 Score = 40.8 bits (96), Expect = 5e-06
 Identities = 22/50 (44%), Positives = 30/50 (60%), Gaps = 6/50 (12%)

Query: 74  ALYDYEANNTDE---LSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           ALYD+E  + DE   L+FK G+ I V+R+ DEN   W   +L +K G  P
Sbjct: 4   ALYDFEMKDEDEKDCLTFKKGDVITVIRRVDEN---WAEGRLGDKIGIFP 50

This model represents the second SH3 domain of SH3RF1 (or POSH), SH3RF2 (or POSHER), SH3RF3 (POSH2), and similar domains. Members of this family are scaffold proteins that function as E3 ubiquitin-protein ligases. They all contain an N-terminal RING finger domain and multiple SH3 domains; SH3RF1 and SH3RF3 have four SH3 domains while SH3RF2 has three. SH3RF1 plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF3 interacts with p21-activated kinase 2 (PAK2) and GTP-loaded Rac1. It may play a role in regulating JNK mediated apoptosis in certain conditions. SH3RF2 acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212939 cd12006, SH3_Fyn_Yrk, Src homology 3 domain of Fyn and Yrk Protein Tyrosine Kinases

 Score = 40.8 bits (95), Expect = 5e-06
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N + 
Sbjct: 5   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVA 55

Fyn and Yrk (Yes-related kinase) are members of the Src subfamily of proteins, which are cytoplasmic (or non-receptor) PTKs. Fyn, together with Lck, plays a critical role in T-cell signal transduction by phosphorylating ITAM (immunoreceptor tyr activation motif) sequences on T-cell receptors, ultimately leading to the proliferation and differentiation of T-cells. In addition, Fyn is involved in the myelination of neurons, and is implicated in Alzheimer's and Parkinson's diseases. Yrk has been detected only in chickens. It is primarily found in neuronal and epithelial cells and in macrophages. It may play a role in inflammation and in response to injury. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212932 cd11999, SH3_PACSIN_like, Src homology 3 domain of an unknown subfamily of proteins with similarity to Protein kinase C and Casein kinase Substrate in Neurons (PACSIN) proteins

 Score = 40.7 bits (95), Expect = 6e-06
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 3/52 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNKEGYVPRN 122
           V A+YDY     DELSFK GE   +L+  DE+E+ W          G  P N
Sbjct: 4   VRAVYDYTGQEPDELSFKAGE--ELLKVEDEDEQGWCKGVTDGGAVGLYPAN 53

PACSINs, also called Synaptic dynamin-associated proteins (Syndapins), act as regulators of cytoskeletal and membrane dynamics. They bind both dynamin and Wiskott-Aldrich syndrome protein (WASP), and may provide direct links between the actin cytoskeletal machinery through WASP and dynamin-dependent endocytosis. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212985 cd12052, SH3_CIN85_1, First Src Homology 3 domain (SH3A) of Cbl-interacting protein of 85 kDa

 Score = 40.6 bits (95), Expect = 7e-06
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 76  YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           +DY+A + DEL+   G+ I  ++K D     WW  ++  + G  P N +
Sbjct: 6   FDYKAQHEDELTITVGDIITKIKKDDGG---WWEGEIKGRRGLFPDNFV 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CIN85; SH3A binds to internal proline-rich motifs within the proline-rich region. This intramolecular interaction serves as a regulatory mechanism to keep CIN85 in a closed conformation, preventing the recruitment of other proteins. SH3A has also been shown to bind ubiquitin and to an atypical PXXXPR motif at the C-terminus of Cbl and the cytoplasmic end of the cell adhesion protein CD2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212861 cd11928, SH3_SH3RF3_1, First Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 40.7 bits (95), Expect = 7e-06
 Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           ALY YE     +L F  G+ II+ RK DEN   W+  +LN   G++P
Sbjct: 5   ALYSYEGKEPGDLKFNKGDIIILRRKVDEN---WYHGELNGCHGFLP 48

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212930 cd11997, SH3_PACSIN3, Src homology 3 domain of Protein kinase C and Casein kinase Substrate in Neurons 3 (PACSIN3)

 Score = 40.7 bits (95), Expect = 8e-06
 Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 9/57 (15%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           V ALYDY     DELSFK GE +  L+ G+E+E+ W   +L +         +GLYP
Sbjct: 4   VRALYDYTGQEADELSFKAGEEL--LKIGEEDEQGWCKGRLLSGR-------IGLYP 51

PACSIN 3 or Syndapin III (Synaptic dynamin-associated protein III) is expressed ubiquitously and regulates glucose uptake in adipocytes through its role in GLUT1 trafficking. It also modulates the subcellular localization and stimulus-specific function of the cation channel TRPV4. PACSINs act as regulators of cytoskeletal and membrane dynamics. Vetebrates harbor three isoforms with distinct expression patterns and specific functions. PACSINs contain an N-terminal F-BAR domain and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212704 cd11770, SH3_Nephrocystin, Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 124
           AL D++A    +LSFK GE + ++ K       WW ++      G VP+  L
Sbjct: 4   ALSDFQAEQEGDLSFKKGEVLRIISK---RADGWWLAENSKGNRGLVPKTYL 52

Nephrocystin contains an SH3 domain involved in signaling pathways that regulate cell adhesion and cytoskeletal organization. It is a protein that in humans is associated with juvenile nephronophthisis, an inherited kidney disease characterized by renal fibrosis that lead to chronic renal failure in children. It is localized in cell-cell junctions in renal duct cells, and is known to interact with Ack1, an activated Cdc42-associated kinase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212700 cd11766, SH3_Nck_2, Second Src Homology 3 domain of Nck adaptor proteins

 Score = 39.9 bits (94), Expect = 1e-05
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
               ++YEA   DELS + G+ ++VL K  +    WW  + N + G+ P N
Sbjct: 2   AVVKFNYEAQREDELSLRKGDRVLVLEKSSDG---WWRGECNGQVGWFPSN 49

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212924 cd11991, SH3_Intersectin1_3, Third Src homology 3 domain (or SH3C) of Intersectin-1

 Score = 40.0 bits (93), Expect = 1e-05
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 4/49 (8%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           A+Y YE+N   +L+F+ G+ I+V +K    + +WW   + +K G  P N
Sbjct: 4   AMYTYESNEQGDLTFQQGDVILVTKK----DGDWWTGTVGDKTGVFPSN 48

Intersectin-1 (ITSN1) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN1 localizes in membranous organelles, CCPs, the Golgi complex, and may be involved in the cell membrane trafficking system. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212860 cd11927, SH3_SH3RF1_1, First Src Homology 3 domain of SH3 domain containing ring finger protein 1, an E3 ubiquitin-protein ligase

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           ALY+YE     +L F  G+ II+ R+ DEN   W+  ++N   G+ P N +
Sbjct: 5   ALYNYEGKEPGDLKFSKGDIIILRRQVDEN---WYHGEVNGIHGFFPTNFV 52

SH3RF1 is also called POSH (Plenty of SH3s) or SH3MD2 (SH3 multiple domains protein 2). It is a scaffold protein that acts as an E3 ubiquitin-protein ligase. It plays a role in calcium homeostasis through the control of the ubiquitin domain protein Herp. It may also have a role in regulating death receptor mediated and JNK mediated apoptosis. SH3RF1 also enhances the ubiquitination of ROMK1 potassium channel resulting in its increased endocytosis. It contains an N-terminal RING finger domain and four SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212874 cd11941, SH3_ARHGEF37_C2, Second C-terminal Src homology 3 domain of Rho guanine nucleotide exchange factor 37

 Score = 39.9 bits (93), Expect = 1e-05
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDEN-EREWWWSKLNNKEGYVPRNLL 124
           V A Y + A +  E+S + G+ + VL   D+    EW   ++N + GYVP + L
Sbjct: 2   VVAAYPFTARSKHEVSLQAGQPVTVLEPHDKKGSPEWSLVEVNGQRGYVPSSYL 55

ARHGEF37 contains a RhoGEF [or Dbl homology (DH)] domain followed by a Bin/Amphiphysin/Rvs (BAR) domain, and two C-terminal SH3 domains. Its specific function is unknown. Its domain architecture is similar to the C-terminal half of DNMBP or Tuba, a cdc42-specific GEF that provides a functional link between dynamin, Rho GTPase signaling, and actin dynamics, and plays an important role in regulating cell junction configuration. GEFs activate small GTPases by exchanging bound GDP for free GTP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212767 cd11833, SH3_Stac_1, First C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing (Stac) proteins

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 14/49 (28%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY ++    ++L  + G+ I +L   +E+   WW  K+ ++ G+ P N
Sbjct: 4   ALYKFKPQENEDLEMRPGDKITLLDDSNED---WWKGKIEDRVGFFPAN 49

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac1 and Stac3 contain two SH3 domains while Stac2 contains a single SH3 domain at the C-terminus. This model represents the first C-terminal SH3 domain of Stac1 and Stac3, and the single C-terminal SH3 domain of Stac2. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212789 cd11855, SH3_Sho1p, Src homology 3 domain of High osmolarity signaling protein Sho1p

 Score = 39.7 bits (93), Expect = 1e-05
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 7/58 (12%)

Query: 72  VYALYDYEANNTD--ELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRNLLGL 126
             ALY Y+A+  D  ELSF+ GE   +L   D + + WW ++ +N E G  P N L L
Sbjct: 2   ARALYPYDASPDDPNELSFEKGE---ILEVSDTSGK-WWQARKSNGETGICPSNYLQL 55

Sho1p (or Sho1), also called SSU81 (Suppressor of SUA8-1 mutation), is a yeast membrane protein that regulates adaptation to high salt conditions by activating the HOG (high-osmolarity glycerol) pathway. High salt concentrations lead to the localization to the membrane of the MAPKK Pbs2, which is then activated by the MAPKK Ste11 and in turn, activates the MAPK Hog1. Pbs2 is localized to the membrane though the interaction of its PxxP motif with the SH3 domain of Sho1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212724 cd11790, SH3_Amphiphysin, Src Homology 3 domain of Amphiphysin and related domains

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 25/38 (65%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 109
           V A +DY A +TDEL+F+ G+ I+V+   D  E++  W
Sbjct: 5   VRATHDYTAEDTDELTFEKGDVILVIPFDDPEEQDEGW 42

Amphiphysins function primarily in endocytosis and other membrane remodeling events. They exist in several isoforms and mammals possess two amphiphysin proteins from distinct genes. Amphiphysin I proteins, enriched in the brain and nervous system, contain domains that bind clathrin, Adaptor Protein complex 2 (AP2), dynamin, and synaptojanin. They function in synaptic vesicle endocytosis. Human autoantibodies to amphiphysin I hinder GABAergic signaling and contribute to the pathogenesis of paraneoplastic stiff-person syndrome. Some amphiphysin II isoforms, also called Bridging integrator 1 (Bin1), are localized in many different tissues and may function in intracellular vesicle trafficking. In skeletal muscle, Bin1 plays a role in the organization and maintenance of the T-tubule network. Mutations in Bin1 are associated with autosomal recessive centronuclear myopathy. Amphiphysins contain an N-terminal BAR domain with an additional N-terminal amphipathic helix (an N-BAR), a variable central domain, and a C-terminal SH3 domain. The SH3 domain of amphiphysins bind proline-rich motifs present in binding partners such as dynamin, synaptojanin, and nsP3. It also belongs to a subset of SH3 domains that bind ubiquitin in a site that overlaps with the peptide binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 64

>gnl|CDD|212905 cd11972, SH3_Abi2, Src homology 3 domain of Abl Interactor 2

 Score = 40.0 bits (93), Expect = 2e-05
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A+YDY  +  DELSF+ G  I V++K D+    W+   +N   G  P N
Sbjct: 5   VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDG---WYEGVMNGVTGLFPGN 52

Abi2 is highly expressed in the brain and eye. It regulates actin cytoskeletal reorganization at adherens junctions and dendritic spines, which is important in cell morphogenesis, migration, and cognitive function. Mice deficient with Abi2 show defects in orientation and migration of lens fibers, neuronal migration, dendritic spine morphology, as well as deficits in learning and memory. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 61

>gnl|CDD|212898 cd11965, SH3_ASAP1, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 1

 Score = 39.6 bits (92), Expect = 2e-05
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 8/57 (14%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           V  +YD +A+N DEL+F  GE IIV     E ++EWW   + + EG   R   G++P
Sbjct: 2   VKTIYDCQADNDDELTFVEGEVIIVT---GEEDQEWW---IGHIEGQPERK--GVFP 50

ASAP1 is also called DDEF1 (Development and Differentiation Enhancing Factor 1), AMAP1, centaurin beta-4, or PAG2. an Arf GTPase activating protein (GAP) with activity towards Arf1 and Arf5 but not Arf6. However, it has been shown to bind GTP-Arf6 stably without GAP activity. It has been implicated in cell growth, migration, and survival, as well as in tumor invasion and malignancy. It binds paxillin and cortactin, two components of invadopodia which are essential for tumor invasiveness. It also binds focal adhesion kinase (FAK) and the SH2/SH3 adaptor CrkL. ASAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212699 cd11765, SH3_Nck_1, First Src Homology 3 domain of Nck adaptor proteins

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 20/52 (38%), Positives = 27/52 (51%), Gaps = 5/52 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW-WSKLNNKEGYVPRN 122
           V A YDY A    ELS K  E + +L    ++ + WW     +N+ GYVP N
Sbjct: 2   VVAKYDYTAQGDQELSIKKNEKLTLL----DDSKHWWKVQNSSNQTGYVPSN 49

Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4), which show partly overlapping functions but also bind distinct targets. Their SH3 domains are involved in recruiting downstream effector molecules, such as the N-WASP/Arp2/3 complex, which when activated induces actin polymerization that results in the production of pedestals, or protrusions of the plasma membrane. The first SH3 domain of Nck proteins preferentially binds the PxxDY sequence, which is present in the CD3e cytoplasmic tail. This binding inhibits phosphorylation by Src kinases, resulting in the downregulation of TCR surface expression. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212841 cd11908, SH3_ITK, Src Homology 3 domain of Interleukin-2-inducible T-cell Kinase

 Score = 39.6 bits (92), Expect = 2e-05
 Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 4/54 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 124
           V ALYDY+ N+  EL+ +  E   +L   D +E  WW  +  N  EGYVP + L
Sbjct: 3   VIALYDYQTNDPQELALRYNEEYHLL---DSSEIHWWRVQDKNGHEGYVPSSYL 53

ITK (also known as Tsk or Emt) is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. ITK is expressed in T-cells and mast cells, and is important in their development and differentiation. Of the three Tec kinases expressed in T-cells, ITK plays the predominant role in T-cell receptor (TCR) signaling. It is activated by phosphorylation upon TCR crosslinking and is involved in the pathway resulting in phospholipase C-gamma1 activation and actin polymerization. It also plays a role in the downstream signaling of the T-cell costimulatory receptor CD28, the T-cell surface receptor CD2, and the chemokine receptor CXCR4. In addition, ITK is crucial for the development of T-helper(Th)2 effector responses. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212941 cd12008, SH3_Src, Src homology 3 domain of Src Protein Tyrosine Kinase

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 5/54 (9%)

Query: 71  AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
              ALYDYE+    +LSFK GE + ++   +  E +WW   S    + GY+P N
Sbjct: 1   TFVALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLTTGQTGYIPSN 51

Src (or c-Src) is a cytoplasmic (or non-receptor) PTK and is the vertebrate homolog of the oncogenic protein (v-Src) from Rous sarcoma virus. Together with other Src subfamily proteins, it is involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. Src also play a role in regulating cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Elevated levels of Src kinase activity have been reported in a variety of human cancers. Several inhibitors of Src have been developed as anti-cancer drugs. Src is also implicated in acute inflammatory responses and osteoclast function. Src kinases contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212783 cd11849, SH3_SPIN90, Src homology 3 domain of SH3 protein interacting with Nck, 90 kDa (SPIN90)

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 17/53 (32%), Positives = 30/53 (56%), Gaps = 6/53 (11%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 124
           ALYD+++   + LSF  GE  ++L + + +    WW  +  + + GYVP N +
Sbjct: 4   ALYDFKSAEPNTLSFSEGETFLLLERSNAH----WWLVTNHSGETGYVPANYV 52

SPIN90 is also called NCK interacting protein with SH3 domain (NCKIPSD), Dia-interacting protein (DIP), 54 kDa vimentin-interacting protein (VIP54), or WASP-interacting SH3-domain protein (WISH). It is an F-actin binding protein that regulates actin polymerization and endocytosis. It associates with the Arp2/3 complex near actin filaments and determines filament localization at the leading edge of lamellipodia. SPIN90 is expressed in the early stages of neuronal differentiation and plays a role in regulating growth cone dynamics and neurite outgrowth. It also interacts with IRSp53 and regulates cell motility by playing a role in the formation of membrane protrusions. SPIN90 contains an N-terminal SH3 domain, a proline-rich domain, and a C-terminal VCA (verprolin-homology and cofilin-like acidic) domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212816 cd11883, SH3_Sdc25, Src Homology 3 domain of Sdc25/Cdc25 guanine nucleotide exchange factors

 Score = 39.2 bits (92), Expect = 2e-05
 Identities = 21/57 (36%), Positives = 27/57 (47%), Gaps = 10/57 (17%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW------SKLNNKEGYVPRN 122
           V ALYD+   + ++LSFK G+ I VL K        WW      S    K G+ P N
Sbjct: 2   VVALYDFTPKSKNQLSFKAGDIIYVLNKDPSG----WWDGVIISSSGKVKRGWFPSN 54

This subfamily is composed of the Saccharomyces cerevisiae guanine nucleotide exchange factors (GEFs) Sdc25 and Cdc25, and similar proteins. These GEFs regulate Ras by stimulating the GDP/GTP exchange on Ras. Cdc25 is involved in the Ras/PKA pathway that plays an important role in the regulation of metabolism, stress responses, and proliferation, depending on available nutrients and conditions. Proteins in this subfamily contain an N-terminal SH3 domain as well as REM (Ras exchanger motif) and RasGEF domains at the C-terminus. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212893 cd11960, SH3_Abp1_eu, Src homology 3 domain of eumetazoan Actin-binding protein 1

 Score = 39.3 bits (92), Expect = 2e-05
 Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 10/55 (18%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           ALYDY+A +  E+SF  G+ I  + + DE    WW        G  P    GL+P
Sbjct: 4   ALYDYQAADDTEISFDPGDIITDIEQIDEG---WW-------RGTGPDGTYGLFP 48

Abp1, also called drebrin-like protein, is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a helical domain, and a C-terminal SH3 domain. Mammalian Abp1, unlike yeast Abp1, does not contain an acidic domain that interacts with the Arp2/3 complex. It regulates actin dynamics indirectly by interacting with dynamin and WASP family proteins. Abp1 deficiency causes abnormal organ structure and function of the spleen, heart, and lung of mice. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212977 cd12044, SH3_SKAP1, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 1

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
            L+D   +N DELSF+ G+ I +L K + N   WW  +LN   G VP++ L
Sbjct: 4   GLWDCFGDNPDELSFQRGDLIYILSK-EYNMYGWWVGELNGIVGIVPKDYL 53

SKAP1, also called SKAP55 (Src kinase-associated protein of 55kDa), is an immune cell-specific adaptor protein that plays an important role in T-cell adhesion, migration, and integrin clustering. It is expressed exclusively in T-lymphocytes, mast cells, and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), Fyn, Riam, RapL, and RasGRP. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. The SH3 domain of SKAP1 is necessary for its ability to regulate T-cell conjugation with antigen-presenting cells and the formation of LFA-1 clusters. SKAP1 binds primarily to a proline-rich region of ADAP through its SH3 domain; its degradation is regulated by ADAP. A secondary interaction occurs via the ADAP SH3 domain and the RKxxYxxY motif in SKAP1. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212954 cd12021, SH3_p47phox_1, First or N-terminal Src homology 3 domain of the p47phox subunit of NADPH oxidase, also called Neutrophil Cytosolic Factor 1

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           A+ DYE ++  E++ KTG+ + V+ K   +E  WW+ +L  K G+VP + L
Sbjct: 4   AIADYEKSSKSEMALKTGDVVEVVEK---SENGWWFCQLKAKRGWVPASYL 51

p47phox, or NCF1, is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox), which plays a key role in the ability of phagocytes to defend against bacterial infections. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p47phox is required for activation of NADH oxidase and plays a role in translocation. It contains an N-terminal Phox homology (PX) domain, tandem SH3 domains (N-SH3 and C-SH3), a polybasic/autoinhibitory region, and a C-terminal proline-rich region (PRR). This model characterizes the first SH3 domain (or N-SH3) of p47phox. In its inactive state, the tandem SH3 domains interact intramolecularly with the autoinhibitory region; upon activation, the tandem SH3 domains are exposed through a conformational change, resulting in their binding to the PRR of p22phox and the activation of NADPH oxidase. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213006 cd12073, SH3_HS1, Src homology 3 domain of Hematopoietic lineage cell-specific protein 1

 Score = 39.0 bits (91), Expect = 3e-05
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           ALYDY+    DE+SF   E I  +   DE    WW    +   G  P N + L
Sbjct: 5   ALYDYQGEGDDEISFDPQETITDIEMVDEG---WWKGTCHGHRGLFPANYVEL 54

HS1, also called HCLS1 (hematopoietic cell-specific Lyn substrate 1), is a cortactin homolog expressed specifically in hematopoietic cells. It is an actin regulatory protein that binds the Arp2/3 complex and stabilizes branched actin filaments. It is required for cell spreading and signaling in lymphocytes. It regulates cytoskeletal remodeling that controls lymphocyte trafficking, and it also affects tissue invasion and infiltration of leukemic B cells. Like cortactin, HS1 contains an N-terminal acidic domain, several copies of a repeat domain found in cortactin and HS1, a proline-rich region, and a C-terminal SH3 domain. The N-terminal region binds the Arp2/3 complex and F-actin, while the C-terminal region acts as an adaptor or scaffold that can connect varied proteins that bind the SH3 domain within the actin network. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212987 cd12054, SH3_CD2AP_2, Second Src Homology 3 domain (SH3B) of CD2-associated protein

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 75  LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           L++Y   N DEL  K G+ I +    +E E  WW   LN K G  P N +
Sbjct: 6   LFEYVPQNEDELELKVGDIIDIN---EEVEEGWWSGTLNGKSGLFPSNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CD2AP. SH3B binds to c-Cbl in a site (TPSSRPLR is the core binding motif) distinct from the c-Cbl/SH3A binding site. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212994 cd12061, SH3_betaPIX, Src Homology 3 domain of beta-Pak Interactive eXchange factor

 Score = 38.9 bits (90), Expect = 3e-05
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A ++++  N DELSF  G+ I V R  +     WW    N + G+ P N
Sbjct: 2   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSN 49

Beta-PIX, also called Rho guanine nucleotide exchange factor 7 (ARHGEF7) or Cool (Cloned out of Library)-1, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and plays important roles in regulating neuroendocrine exocytosis, focal adhesion maturation, cell migration, synaptic vesicle localization, and insulin secretion. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212771 cd11837, SH3_Intersectin_2, Second Src homology 3 domain (or SH3B) of Intersectin

 Score = 38.9 bits (91), Expect = 3e-05
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 71  AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 122
              ALY + A   + LSF  G+ I VL + +     WW+ +L   +EG+ P++
Sbjct: 1   TATALYPWRAKKENHLSFAKGDIITVLEQQE----MWWFGELEGGEEGWFPKS 49

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The second SH3 domain (or SH3B) of ITSN1 has been shown to bind WNK and CdGAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212743 cd11809, SH3_srGAP, Src homology 3 domain of Slit-Robo GTPase Activating Proteins

 Score = 38.5 bits (90), Expect = 4e-05
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           A +DY   +  ELSFK G+ + + R+  +   +WW  +LN ++G VP
Sbjct: 4   AQFDYTGRSERELSFKKGDSLTLYRQVSD---DWWRGQLNGQDGLVP 47

Slit-Robo GTPase Activating Proteins (srGAPs) are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. Vertebrates contain three isoforms of srGAPs (srGAP1-3), all of which are expressed during embryonic and early development in the nervous system but with different localization and timing. A fourth member has also been reported (srGAP4, also called ARHGAP4). srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212708 cd11774, SH3_Sla1p_2, Second Src Homology 3 domain of the fungal endocytic adaptor protein Sla1p

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRN 122
             ALYDY+    +ELSF  G+ + V    D+++ +W     N  + G+VP N
Sbjct: 2   AKALYDYDKQTEEELSFNEGDTLDVY---DDSDSDWILVGFNGTQFGFVPAN 50

Sla1p facilitates endocytosis by playing a role as an adaptor protein in coupling components of the actin cytoskeleton to the endocytic machinery. It interacts with Abp1p, Las17p and Pan1p, which are activator proteins of actin-related protein 2/3 (Arp2/3). Sla1p contains multiple domains including three SH3 domains, a SAM (sterile alpha motif) domain, and a Sla1 homology domain 1 (SHD1), which binds to the NPFXD motif that is found in many integral membrane proteins such as the Golgi-localized Arf-binding protein Lsb5p and the P4-ATPases, Drs2p and Dnf1p. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212899 cd11966, SH3_ASAP2, Src homology 3 domain of ArfGAP with SH3 domain, ankyrin repeat and PH domain containing protein 2

 Score = 38.8 bits (90), Expect = 4e-05
 Identities = 21/52 (40%), Positives = 29/52 (55%), Gaps = 6/52 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN---NKEGYVP 120
           V ALY+  A+N DEL+F  GE IIV     E ++EWW   ++    + G  P
Sbjct: 2   VKALYNCVADNPDELTFSEGEIIIV---DGEEDKEWWIGHIDGEPTRRGAFP 50

ASAP2 is also called DDEF2 (Development and Differentiation Enhancing Factor 2), AMAP2, centaurin beta-3, or PAG3. It mediates the functions of Arf GTPases vial dual mechanisms: it exhibits GTPase activating protein (GAP) activity towards class I (Arf1) and II (Arf5) Arfs; and it binds class III Arfs (GTP-Arf6) stably without GAP activity. It binds paxillin and is implicated in Fcgamma receptor-mediated phagocytosis in macrophages and in cell migration. ASAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, ankyrin (ANK) repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212838 cd11905, SH3_Tec, Src Homology 3 domain of Tec (Tyrosine kinase expressed in hepatocellular carcinoma)

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN--KEGYVPRN 122
           V A+YD++     +L  +TGE  ++L K D +    WW   +   KEGY+P N
Sbjct: 3   VVAMYDFQPTEPHDLRLETGEEYVILEKNDVH----WWKARDKYGKEGYIPSN 51

Tec is a cytoplasmic (or nonreceptor) tyr kinase containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. It also contains an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation, and the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. It is more widely-expressed than other Tec subfamily kinases. Tec is found in endothelial cells, both B- and T-cells, and a variety of myeloid cells including mast cells, erythroid cells, platelets, macrophages and neutrophils. Tec is a key component of T-cell receptor (TCR) signaling, and is important in TCR-stimulated proliferation, IL-2 production and phospholipase C-gamma1 activation. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212866 cd11933, SH3_Nebulin_C, C-terminal Src Homology 3 domain of Nebulin

 Score = 38.4 bits (89), Expect = 5e-05
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 5/53 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLL 124
           A+YDY A + DE+SFK G+ I+ ++  DE    W +  +    K G +P N +
Sbjct: 6   AMYDYRAADDDEVSFKDGDTIVNVQTIDEG---WMYGTVQRTGKTGMLPANYV 55

Nebulin is a giant filamentous protein (600-900 kD) that is expressed abundantly in skeletal muscle. It binds to actin thin filaments and regulates its assembly and function. Nebulin was thought to be part of a molecular ruler complex that is critical in determining the lengths of actin thin filaments in skeletal muscle since its length, which varies due to alternative splicing, correlates with the length of thin filaments in various muscle types. Recent studies indicate that nebulin regulates thin filament length by stabilizing the filaments and preventing depolymerization. Mutations in nebulin can cause nemaline myopathy, characterized by muscle weakness which can be severe and can lead to neonatal lethality. Nebulin contains an N-terminal LIM domain, many nebulin repeats/super repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212702 cd11768, SH3_Tec_like, Src Homology 3 domain of Tec-like Protein Tyrosine Kinases

 Score = 38.0 bits (89), Expect = 6e-05
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 122
           V ALYD++     +L  + GE  +VL   D++   WW ++  N  EGY+P N
Sbjct: 2   VVALYDFQPIEPGDLPLEKGEEYVVL---DDSNEHWWRARDKNGNEGYIPSN 50

The Tec (Tyrosine kinase expressed in hepatocellular carcinoma) subfamily is composed of Tec, Btk, Bmx (Etk), Itk (Tsk, Emt), Rlk (Txk), and similar proteins. They are cytoplasmic (or nonreceptor) tyr kinases containing Src homology protein interaction domains (SH3, SH2) N-terminal to the catalytic tyr kinase domain. Most Tec subfamily members (except Rlk) also contain an N-terminal pleckstrin homology (PH) domain, which binds the products of PI3K and allows membrane recruitment and activation. In addition, some members contain the Tec homology (TH) domain, which contains proline-rich and zinc-binding regions. Tec kinases are expressed mainly by haematopoietic cells, although Tec and Bmx are also found in endothelial cells. B-cells express Btk and Tec, while T-cells express Itk, Txk, and Tec. Collectively, Tec kinases are expressed in a variety of myeloid cells such as mast cells, platelets, macrophages, and dendritic cells. Each Tec kinase shows a distinct cell-type pattern of expression. The function of Tec kinases in lymphoid cells have been studied extensively. They play important roles in the development, differentiation, maturation, regulation, survival, and function of B-cells and T-cells. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212845 cd11912, SH3_Bzz1_1, First Src Homology 3 domain of Bzz1 and similar domains

 Score = 38.0 bits (89), Expect = 6e-05
 Identities = 20/50 (40%), Positives = 27/50 (54%), Gaps = 7/50 (14%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVP 120
            LYDY A+  DE+S   GE + VL   D +     W+K+ N   +EG VP
Sbjct: 4   VLYDYTASGDDEVSISEGEEVTVLEPDDGSG----WTKVRNGSGEEGLVP 49

Bzz1 (or Bzz1p) is a WASP/Las17-interacting protein involved in endocytosis and trafficking to the vacuole. It physically interacts with type I myosins and functions in the early steps of endocytosis. Together with other proteins, it induces membrane scission in yeast. Bzz1 contains an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), a central coiled-coil, and two C-terminal SH3 domains. This model represents the first C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212862 cd11929, SH3_SH3RF2_1, First Src Homology 3 domain of SH3 domain containing ring finger 2

 Score = 38.0 bits (88), Expect = 7e-05
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           AL +Y  +N  +L F  G+ I++ R+ DEN   W+  ++N   G  P +
Sbjct: 5   ALCNYRGHNPGDLKFNKGDVILLRRQLDEN---WYLGEINGVSGIFPAS 50

SH3RF2 is also called POSHER (POSH-eliminating RING protein) or HEPP1 (heart protein phosphatase 1-binding protein). It acts as an anti-apoptotic regulator of the JNK pathway by binding to and promoting the degradation of SH3RF1 (or POSH), a scaffold protein that is required for pro-apoptotic JNK activation. It may also play a role in cardiac functions together with protein phosphatase 1. SH3RF2 contains an N-terminal RING finger domain and three SH3 domains. This model represents the first SH3 domain, located at the N-terminal half, of SH3RF2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212904 cd11971, SH3_Abi1, Src homology 3 domain of Abl Interactor 1

 Score = 38.1 bits (88), Expect = 8e-05
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A+YDY  +  DELSF  G  I V++K D+    W+    N   G  P N
Sbjct: 2   VVAIYDYSKDKDDELSFMEGAIIYVIKKNDDG---WYEGVCNGVTGLFPGN 49

Abi1, also called e3B1, is a central regulator of actin cytoskeletal reorganization through interactions with many protein complexes. It is part of WAVE, a nucleation-promoting factor complex, that links Rac 1 activation to actin polymerization causing lamellipodia protrusion at the plasma membrane. Abi1 interact with formins to promote protrusions at the leading edge of motile cells. It also is a target of alpha4 integrin, regulating membrane protrusions at sites of integrin engagement. Abi proteins are adaptor proteins serving as binding partners and substrates of Abl tyrosine kinases. They are involved in regulating actin cytoskeletal reorganization and play important roles in membrane-ruffling, endocytosis, cell motility, and cell migration. Abi proteins contain a homeobox homology domain, a proline-rich region, and a SH3 domain. The SH3 domain of Abi binds to a PxxP motif in Abl. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212736 cd11802, SH3_Endophilin_B, Src homology 3 domain of Endophilin-B

 Score = 37.7 bits (88), Expect = 8e-05
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 121
            LYDY+A ++ ELS    E I V      +E ++   +  ++ G VP 
Sbjct: 4   VLYDYDAEDSTELSLLADEVITVYELPGMDE-DYMMGERGSQRGKVPV 50

Endophilins play roles in synaptic vesicle formation, virus budding, mitochondrial morphology maintenance, receptor-mediated endocytosis inhibition, and endosomal sorting. They are classified into two types, A and B. Vertebrates contain two endophilin-B isoforms. Endophilin-B proteins are cytoplasmic proteins expressed mainly in the heart, placenta, and skeletal muscle. Endophilins contain an N-terminal N-BAR domain (BAR domain with an additional N-terminal amphipathic helix), followed by a variable region containing proline clusters, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212894 cd11961, SH3_Abp1_fungi_C2, Second C-terminal Src homology 3 domain of Fungal Actin-binding protein 1

 Score = 37.5 bits (87), Expect = 1e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALYDY+A   +ELSF   + II +   D++   WW  + +   G  P N
Sbjct: 2   AKALYDYDAAEDNELSFFENDKIINIEFVDDD---WWLGECHGSRGLFPSN 49

Abp1 is an adaptor protein that functions in receptor-mediated endocytosis and vesicle trafficking. It contains an N-terminal actin-binding module, the actin-depolymerizing factor (ADF) homology domain, a central proline-rich region, and a C-terminal SH3 domain (many yeast Abp1 proteins contain two C-terminal SH3 domains). Yeast Abp1 also contains two acidic domains that bind directly to the Arp2/3 complex, which is required to initiate actin polymerization. The SH3 domain of yeast Abp1 binds and localizes the kinases, Ark1p and Prk1p, which facilitate actin patch disassembly following vesicle internalization. It also mediates the localization to the actin patch of the synaptojanin-like protein, Sjl2p, which plays a key role in endocytosis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212772 cd11838, SH3_Intersectin_3, Third Src homology 3 domain (or SH3C) of Intersectin

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY YE+N   +L+F  G+ I+V +K    + EWW   + ++ G  P N
Sbjct: 4   ALYPYESNEPGDLTFNAGDVILVTKK----DGEWWTGTIGDRTGIFPSN 48

Intersectins (ITSNs) are adaptor proteins that function in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. They are essential for initiating clathrin-coated pit formation. They bind to many proteins through their multidomain structure and facilitate the assembly of multimeric complexes. Vertebrates contain two ITSN proteins, ITSN1 and ITSN2, which exist in alternatively spliced short and long isoforms. The short isoforms contain two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoforms, in addition, contain RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. ITSN1 and ITSN2 are both widely expressed, with variations depending on tissue type and stage of development. The third SH3 domain (or SH3C) of ITSN1 has been shown to bind many proteins including dynamin1/2, CIN85, c-Cbl, SHIP2, Reps1, synaptojanin-1, and WNK, among others. The SH3C of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212853 cd11920, SH3_Sorbs2_1, First Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 37.7 bits (87), Expect = 1e-04
 Identities = 18/47 (38%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           A+YD++A  + ELSFK G+ + +LRK D+N   W+  + + + G  P
Sbjct: 5   AVYDFKAQTSKELSFKKGDTVYILRKIDQN---WYEGEHHGRVGIFP 48

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212715 cd11781, SH3_Sorbs_1, First Src Homology 3 domain of Sorbin and SH3 domain containing (Sorbs) proteins and similar domains

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY ++A +  ELS K G+ I + R+ D+N   W+  + N + G  P +
Sbjct: 4   ALYPFKAQSAKELSLKKGDIIYIRRQIDKN---WYEGEHNGRVGIFPAS 49

This family, also called the vinexin family, is composed predominantly of adaptor proteins containing one sorbin homology (SoHo) and three SH3 domains. Members include the first SH3 domains of Sorbs1 (or ponsin), Sorbs2 (or ArgBP2), Vinexin (or Sorbs3), and similar domains. They are involved in the regulation of cytoskeletal organization, cell adhesion, and growth factor signaling. Members of this family bind multiple partners including signaling molecules like c-Abl, c-Arg, Sos, and c-Cbl, as well as cytoskeletal molecules such as vinculin and afadin. They may have overlapping functions. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212722 cd11788, SH3_RasGAP, Src Homology 3 domain of Ras GTPase-Activating Protein 1

 Score = 37.4 bits (87), Expect = 1e-04
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 5/44 (11%)

Query: 83  TDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 124
           TDELSF+ G+  +V    +E E  W W  S    + G V R+L+
Sbjct: 16  TDELSFQKGDIFVVH---NELEDGWLWVTSLRTGESGLVFRDLV 56

RasGAP, also called Ras p21 protein activator, RASA1, or p120RasGAP, is part of the GAP1 family of GTPase-activating proteins. It is a 120kD cytosolic protein containing an SH3 domain flanked by two SH2 domains at the N-terminal end, a pleckstrin homology (PH) domain, a calcium dependent phospholipid binding domain (CaLB/C2), and a C-terminal catalytic GAP domain. It stimulates the GTPase activity of normal RAS p21. It acts as a positive effector of Ras in tumor cells. It also functions as a regulator downstream of tyrosine receptors such as those of PDGF, EGF, ephrin, and insulin, among others. The SH3 domain of RasGAP is unable to bind proline-rich sequences but have been shown to interact with protein partners such as the G3BP protein, Aurora kinases, and the Calpain small subunit 1. The RasGAP SH3 domain is necessary for the downstream signaling of Ras and it also influences Rho-mediated cytoskeletal reorganization. SH3 domains are protein interaction domains that typically bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212993 cd12060, SH3_alphaPIX, Src Homology 3 domain of alpha-Pak Interactive eXchange factor

 Score = 37.3 bits (86), Expect = 1e-04
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A ++++  N DELS   G+ I V R  +     WW   LN K G+ P N
Sbjct: 4   VKARFNFKQTNEDELSVCKGDIIYVTRVEEGG---WWEGTLNGKTGWFPSN 51

Alpha-PIX, also called Rho guanine nucleotide exchange factor 6 (ARHGEF6) or Cool (Cloned out of Library)-2, activates small GTPases by exchanging bound GDP for free GTP. It acts as a GEF for both Cdc42 and Rac 1, and is localized in dendritic spines where it regulates spine morphogenesis. It controls dendritic length and spine density in the hippocampus. Mutations in the ARHGEF6 gene cause X-linked intellectual disability in humans. PIX proteins contain an N-terminal SH3 domain followed by RhoGEF (also called Dbl-homologous or DH) and Pleckstrin Homology (PH) domains, and a C-terminal leucine-zipper domain for dimerization. The SH3 domain of PIX binds to an atypical PxxxPR motif in p21-activated kinases (PAKs) with high affinity. The binding of PAKs to PIX facilitate the localization of PAKs to focal complexes and also localizes PAKs to PIX targets Cdc43 and Rac, leading to the activation of PAKs. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212759 cd11825, SH3_PLCgamma, Src homology 3 domain of Phospholipase C (PLC) gamma

 Score = 37.3 bits (87), Expect = 1e-04
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 4/53 (7%)

Query: 71  AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-EGYVPRN 122
            V ALYDY A   DELSF     I  + K D     WW      K + + P N
Sbjct: 1   TVKALYDYRAQRPDELSFCKHAIITNVEKEDGG---WWRGDYGGKKQKWFPAN 50

PLC catalyzes the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG) in response to various receptors. Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma catalyzes this reaction in tyrosine kinase-dependent signaling pathways. It is activated and recruited to its substrate at the membrane. Vertebrates contain two forms of PLCgamma, PLCgamma1, which is widely expressed, and PLCgamma2, which is primarily found in haematopoietic cells. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. The SH3 domain of PLCgamma1 directly interacts with dynamin-1 and can serve as a guanine nucleotide exchange factor (GEF). It also interacts with Cbl, inhibiting its phosphorylation and activity. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212750 cd11816, SH3_Eve1_3, Third Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           A +D+E    DELSF  G+ I +     E   EW   +LN K G  P N
Sbjct: 4   ARFDFEGEQEDELSFSEGDVITLKEYVGE---EWAKGELNGKIGIFPLN 49

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 51

>gnl|CDD|212820 cd11887, SH3_Bbc1, Src Homology 3 domain of Bbc1 and similar domains

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 8/56 (14%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-----NNKEGYVPRN 122
           V ALY YE+++ D+L+F  G+ I V  + D    +W++ +      N KEG  P+N
Sbjct: 4   VKALYPYESDHEDDLNFDVGQLITVTEEEDA---DWYFGEYVDSNGNTKEGIFPKN 56

This subfamily is composed of Saccharomyces cerevisiae Bbc1p, also called Mti1p (Myosin tail region-interacting protein), and similar proteins. Bbc1p interacts with and regulates type I myosins in yeast, Myo3p and Myo5p, which are involved in actin cytoskeletal reorganization. It also binds and inhibits Las17, a WASp family protein that functions as an activator of the Arp2/3 complex. Bbc1p contains an N-terminal SH3 domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 60

>gnl|CDD|212723 cd11789, SH3_Nebulin_family_C, C-terminal Src Homology 3 domain of the Nebulin family of proteins

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 13/55 (23%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDE------NEREWWWSKLNNKEGYVPRN 122
           A+YDY A + DE+SF+ G+ II +   D+       +R         + G +P N
Sbjct: 4   AMYDYAAADDDEVSFQEGDVIINVEIIDDGWMEGTVQR-------TGQSGMLPAN 51

Nebulin family proteins contain multiple nebulin repeats, and may contain an N-terminal LIM domain and/or a C-terminal SH3 domain. They have molecular weights ranging from 34 to 900 kD, depending on the number of nebulin repeats, and they all bind actin. They are involved in the regulation of actin filament architecture and function as stabilizers and scaffolds for cytoskeletal structures with which they associate, such as long actin filaments or focal adhesions. Nebulin family proteins that contain a C-terminal SH3 domain include the giant filamentous protein nebulin, nebulette, Lasp1, and Lasp2. Lasp2, also called LIM-nebulette, is an alternatively spliced variant of nebulette. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212817 cd11884, SH3_MYO15, Src Homology 3 domain of Myosin XV

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 6/61 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V A+  Y   +   LSF  G+ I +L K    +  W +  L+ + G  P+        VQ
Sbjct: 2   VVAVRAYITRDQTLLSFHKGDVIKLLPKEGPLDPGWLFGTLDGRSGAFPKEY------VQ 55

Query: 132 P 132
           P
Sbjct: 56  P 56

This subfamily is composed of proteins with similarity to Myosin XVa. Myosin XVa is an unconventional myosin that is critical for the normal growth of mechanosensory stereocilia of inner ear hair cells. Mutations in the myosin XVa gene are associated with nonsyndromic hearing loss. Myosin XVa contains a unique N-terminal extension followed by a motor domain, light chain-binding IQ motifs, and a tail consisting of a pair of MyTH4-FERM tandems separated by a SH3 domain, and a PDZ domain. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 56

>gnl|CDD|212798 cd11864, SH3_PEX13_eumet, Src Homology 3 domain of eumetazoan Peroxisomal biogenesis factor 13

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDE-NEREWWWSKLNNKE-GYVPRN 122
           A YD+ A + DELSF+ G+ + +  K  +   R W  + ++ ++ G VP N
Sbjct: 4   AEYDFVAESEDELSFRAGDKLRLAPKELQPRVRGWLLATVDGQKIGLVPAN 54

PEX13 is a peroxin and is required for protein import into the peroxisomal matrix and membrane. It is an integral membrane protein that is essential for the localization of PEX14 and the import of proteins containing the peroxisome matrix targeting signals, PTS1 and PTS2. Mutations of the PEX13 gene in humans lead to a wide range of peroxisome biogenesis disorders (PBDs), the most severe of which is known as Zellweger syndrome (ZS), a severe multisystem disorder characterized by hypotonia, psychomotor retardation, and neuronal migration defects. PEX13 contains two transmembrane regions and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212815 cd11882, SH3_GRAF-like, Src Homology 3 domain of GTPase Regulator Associated with Focal adhesion kinase and similar proteins

 Score = 36.1 bits (84), Expect = 3e-04
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALY  +A +  ELSF+ G+ I  ++  D  E  W    LN + G +P N
Sbjct: 2   ARALYACKAEDESELSFEPGQIITNVQPSD--EPGWLEGTLNGRTGLIPEN 50

This subfamily is composed of Rho GTPase activating proteins (GAPs) with similarity to GRAF. Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, a Rho GAP domain, and a C-terminal SH3 domain. Although vertebrates harbor four Rho GAPs in the GRAF subfamily including GRAF, GRAF2, GRAF3, and Oligophrenin-1 (OPHN1), only three are included in this model. OPHN1 contains the BAR, PH and GAP domains, but not the C-terminal SH3 domain. GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. GRAF influences Rho-mediated cytoskeletal rearrangements and binds focal adhesion kinase. GRAF2 regulates caspase-activated p21-activated protein kinase-2. The SH3 domain of GRAF and GRAF2 binds PKNbeta, a target of the small GTPase Rho. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212986 cd12053, SH3_CD2AP_1, First Src Homology 3 domain (SH3A) of CD2-associated protein

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)

Query: 76  YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           YDY+A + DEL+ + GE I  ++K +E    W   +LN + G  P N +
Sbjct: 6   YDYDAVHEDELTIRVGEIIRNVKKLEEE--GWLEGELNGRRGMFPDNFV 52

CD2AP, also called CMS (Cas ligand with Multiple SH3 domains) or METS1 (Mesenchyme-to-Epithelium Transition protein with SH3 domains), is a cytosolic adaptor protein that plays a role in regulating the cytoskeleton. It is critical in cell-to-cell union necessary for kidney function. It also stabilizes the contact between a T cell and antigen-presenting cells. It is primarily expressed in podocytes at the cytoplasmic face of the slit diaphragm and serves as a linker anchoring podocin and nephrin to the actin cytoskeleton. CD2AP contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CD2AP to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the first SH3 domain (SH3A) of CD2AP. SH3A binds to the PXXXPR motif present in c-Cbl and the cytoplasmic domain of cell adhesion protein CD2. Its interaction with CD2 anchors CD2 at sites of cell contact. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 56

>gnl|CDD|212889 cd11956, SH3_srGAP4, Src homology 3 domain of Slit-Robo GTPase Activating Protein 4

 Score = 36.0 bits (83), Expect = 4e-04
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           A +DY      ELSFK G+ +++  K      +WW  + N   G +P
Sbjct: 6   ACFDYTGRTAQELSFKRGDVLLLHSKASS---DWWRGEHNGMRGLIP 49

srGAP4, also called ARHGAP4, is highly expressed in hematopoietic cells and may play a role in lymphocyte differentiation. It is able to stimulate the GTPase activity of Rac1, Cdc42, and RhoA. In the nervous system, srGAP4 has been detected in differentiating neurites and may be involved in axon and dendritic growth. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212828 cd11895, SH3_FCHSD1_2, Second Src Homology 3 domain of FCH and double SH3 domains protein 1

 Score = 36.1 bits (83), Expect = 5e-04
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVL-RKGDENEREWWWSKLNNKEGYVP 120
             ALY Y   + +ELSF  G  I +L R  D  +  +W  +   + G  P
Sbjct: 2   ARALYSYTGQSPEELSFPEGALIRLLPRAQDGVDDGFWRGEFGGRVGVFP 51

FCHSD1 has a domain structure consisting of an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs), two SH3, and C-terminal proline-rich domains. It has only been characterized in silico and its function is unknown. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|212988 cd12055, SH3_CIN85_2, Second Src Homology 3 domain (SH3B) of Cbl-interacting protein of 85 kDa

 Score = 35.7 bits (82), Expect = 5e-04
 Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
             + Y   N DEL  K G+ I V+    E E  WW   LN K G  P N +
Sbjct: 4   VAFSYLPQNEDELELKVGDIIEVV---GEVEEGWWEGVLNGKTGMFPSNFI 51

CIN85, also called SH3 domain-containing kinase-binding protein 1 (SH3KBP1) or CD2-binding protein 3 (CD2BP3) or Ruk, is an adaptor protein that is involved in the downregulation of receptor tyrosine kinases by facilitating endocytosis through interaction with endophilin-associated ubiquitin ligase Cbl proteins. It is also important in many other cellular processes including vesicle-mediated transport, cytoskeletal remodelling, apoptosis, cell adhesion and migration, and viral infection, among others. CIN85 exists as multiple variants from alternative splicing; the main variant contains three SH3 domains, a proline-rich region, and a C-terminal coiled-coil domain. All of these domains enable CIN85 to bind various protein partners and assemble complexes that have been implicated in many different functions. This alignment model represents the second SH3 domain (SH3B) of CIN85. SH3B has been shown to bind Cbl proline-rich peptides and ubiquitin. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212925 cd11992, SH3_Intersectin2_3, Third Src homology 3 domain (or SH3C) of Intersectin-2

 Score = 35.8 bits (82), Expect = 5e-04
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY Y ++   +L+F  GE I+V +K    + EWW   + ++ G  P N
Sbjct: 4   ALYPYSSSEPGDLTFNEGEEILVTQK----DGEWWTGSIEDRTGIFPSN 48

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The third SH3 domain (SH3C) of ITSN2 has been shown to bind the K15 protein of Kaposi's sarcoma-associated herpesvirus. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212921 cd11988, SH3_Intersectin2_1, First Src homology 3 domain (or SH3A) of Intersectin-2

 Score = 35.6 bits (82), Expect = 5e-04
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY +EA N DE+SF  G  II + +    E  W +       G+ P N
Sbjct: 6   ALYPFEARNHDEMSFNAG-DIIQVDEKTVGEPGWLYGSFQGNFGWFPCN 53

Intersectin-2 (ITSN2) is an adaptor protein that functions in exo- and endocytosis, actin cytoskeletal reorganization, and signal transduction. It plays a role in clathrin-coated pit (CCP) formation. It binds to many proteins through its multidomain structure and facilitate the assembly of multimeric complexes. ITSN2 also functions as a specific GEF for Cdc42 activation in epithelial morphogenesis, and is required in mitotic spindle orientation. It exists in alternatively spliced short and long isoforms. The short isoform contains two Eps15 homology domains (EH1 and EH2), a coiled-coil region and five SH3 domains (SH3A-E), while the long isoform, in addition, contains RhoGEF (also called Dbl-homologous or DH), Pleckstrin homology (PH) and C2 domains. The first SH3 domain (or SH3A) of ITSN2 is expected to bind many protein partners, similar to ITSN1 which has been shown to bind Sos1, dynamin1/2, CIN85, c-Cbl, PI3K-C2, SHIP2, N-WASP, and CdGAP, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212950 cd12017, SH3_Tks_3, Third Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 35.5 bits (82), Expect = 6e-04
 Identities = 15/53 (28%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 73  YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 125
           + + +++A   D +SF+ G+ + V+   D+N   WW+ K++ KEG+ P + + 
Sbjct: 3   FTIGEFQATIQDGISFQKGQKVEVI---DKNPSGWWYVKIDGKEGWAPSSYIE 52

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the third SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212791 cd11857, SH3_DBS, Src homology 3 domain of DBL's Big Sister (DBS), a guanine nucleotide exchange factor

 Score = 35.3 bits (82), Expect = 6e-04
 Identities = 18/52 (34%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLL 124
            + DYE    D+L+ K+G+ + ++ +GD  E +W    L+  KEG+VP   L
Sbjct: 4   VVADYEKGGPDDLTVKSGDLVQLIHEGD--EGQWLVKNLSTRKEGWVPAANL 53

DBS, also called MCF2L (MCF2-transforming sequence-like protein) or OST, is a Rho GTPase guanine nucleotide exchange factor (RhoGEF), facilitating the exchange of GDP and GTP. It was originally isolated from a cDNA screen for sequences that cause malignant growth. It plays roles in regulating clathrin-mediated endocytosis and cell migration through its activation of Rac1 and Cdc42. Depending on cell type, DBS can also activate RhoA and RhoG. DBS contains a Sec14-like domain, spectrin-like repeats, a RhoGEF [or Dbl homology (DH)] domain, a Pleckstrin homology (PH) domain, and an SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212949 cd12016, SH3_Tks_2, Second Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 35.5 bits (82), Expect = 7e-04
 Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 76  YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
             Y+A N DE+ F+TG  + V++K   N   WW  +   KEG+ P   L
Sbjct: 7   QAYKAENEDEIGFETGVVVEVIQK---NLDGWWKIRYQGKEGWAPATYL 52

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the second SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212888 cd11955, SH3_srGAP1-3, Src homology 3 domain of Slit-Robo GTPase Activating Proteins 1, 2, and 3

 Score = 35.3 bits (81), Expect = 7e-04
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           A +DY   +  ELSFK G  +++  +  +   +WW  + N  +G VP
Sbjct: 4   AKFDYVGRSARELSFKKGASLLLYHRASD---DWWEGRHNGIDGLVP 47

srGAP1, also called Rho GTPase-Activating Protein 13 (ARHGAP13), is a Cdc42- and RhoA-specific GAP and is expressed later in the development of central nervous system tissues. srGAP2 is expressed in zones of neuronal differentiation. It plays a role in the regeneration of neurons and axons. srGAP3, also called MEGAP (MEntal disorder associated GTPase-Activating Protein), is a Rho GAP with activity towards Rac1 and Cdc42. It impacts cell migration by regulating actin and microtubule cytoskeletal dynamics. The association between srGAP3 haploinsufficiency and mental retardation is under debate. srGAPs are Rho GAPs that interact with Robo1, the transmembrane receptor of Slit proteins. Slit proteins are secreted proteins that control axon guidance and the migration of neurons and leukocytes. srGAPs contain an N-terminal F-BAR domain, a Rho GAP domain, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212769 cd11835, SH3_ARHGAP32_33, Src homology 3 domain of Rho GTPase-activating proteins 32 and 33, and similar proteins

 Score = 35.1 bits (81), Expect = 7e-04
 Identities = 15/51 (29%), Positives = 23/51 (45%)

Query: 71  AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 121
           A + +  Y A   DELS + G+ + V+      E  WW  K   + G+ P 
Sbjct: 1   AAHVIKRYTAQAPDELSLEVGDIVSVIDMPPPEESTWWRGKKGFQVGFFPS 51

Members of this family contain N-terminal PX and Src Homology 3 (SH3) domains, a central Rho GAP domain, and C-terminal extensions. RhoGAPs (or ARHGAPs) bind to Rho proteins and enhance the hydrolysis rates of bound GTP. ARHGAP32 is also called RICS, PX-RICS, p250GAP, or p200RhoGAP. It is a Rho GTPase-activating protein for Cdc42 and Rac1, and is implicated in the regulation of postsynaptic signaling and neurite outgrowth. PX-RICS, a variant of RICS that contain PX and SH3 domains, is the main isoform expressed during neural development. It is involved in neural functions including axon and dendrite extension, postnatal remodeling, and fine-tuning of neural circuits during early brain development. ARHGAP33, also called sorting nexin 26 or TCGAP (Tc10/CDC42 GTPase-activating protein), is widely expressed in the brain where it is involved in regulating the outgrowth of axons and dendrites and is regulated by the protein tyrosine kinase Fyn. It is translocated to the plasma membrane in adipocytes in response to insulin and may be involved in the regulation of insulin-stimulated glucose transport. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212844 cd11911, SH3_CIP4-like, Src Homology 3 domain of Cdc42-Interacting Protein 4

 Score = 35.3 bits (82), Expect = 8e-04
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 11/52 (21%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRK--GDENEREWWWSKL---NNKEGYVP 120
           ALYD++  +   LS + GE ++VL +  GD       W+++   N  EGYVP
Sbjct: 4   ALYDFDGTSEGTLSMEEGEILLVLEEDGGDG------WTRVRKNNGDEGYVP 49

This subfamily is composed of Cdc42-Interacting Protein 4 (CIP4), Formin Binding Protein 17 (FBP17), FormiN Binding Protein 1-Like (FNBP1L), and similar proteins. CIP4 and FNBP1L are Cdc42 effectors that bind Wiskott-Aldrich syndrome protein (WASP) and function in endocytosis. CIP4 and FBP17 bind to the Fas ligand and may be implicated in the inflammatory response. CIP4 may also play a role in phagocytosis. It functions downstream of Cdc42 in PDGF-dependent actin reorganization and cell migration, and also regulates the activity of PDGFRbeta. It uses Src as a substrate in regulating the invasiveness of breast tumor cells. CIP4 may also play a role in the pathogenesis of Huntington's disease. Members of this subfamily typically contain an N-terminal F-BAR (FES-CIP4 Homology and Bin/Amphiphysin/Rvs) domain, a central Cdc42-binding HR1 domain, and a C-terminal SH3 domain. The SH3 domain of CIP4 associates with Gapex-5, a Rab31 GEF. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212856 cd11923, SH3_Sorbs2_2, Second Src Homology 3 domain of Sorbin and SH3 domain containing 2 (Sorbs2), also called Arg-binding protein 2 (ArgBP2)

 Score = 35.3 bits (81), Expect = 8e-04
 Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 5/53 (9%)

Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVP 120
           G   A Y++ A+   ELS + G+ +++L++ D+N   W+  K+   N++G  P
Sbjct: 1   GEAVAKYNFNADTNVELSLRKGDRVVLLKQVDQN---WYEGKIPGTNRQGIFP 50

Sorbs2 or ArgBP2 is an adaptor protein containing one sorbin homology (SoHo) and three SH3 domains. It regulates actin-dependent processes including cell adhesion, morphology, and migration. It is expressed in many tissues and is abundant in the heart. Like vinexin, it is found in focal adhesion where it interacts with vinculin and afadin. It also localizes in epithelial cell stress fibers and in cardiac muscle cell Z-discs. Sorbs2 has been implicated to play roles in the signaling of c-Arg, Akt, and Pyk2. Other interaction partners of Sorbs2 include c-Abl, flotillin, spectrin, dynamin 1/2, synaptojanin, PTP-PEST, among others. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|213007 cd12074, SH3_Tks5_1, First Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains

 Score = 35.1 bits (80), Expect = 8e-04
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)

Query: 77  DYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           +YE     E+S + GE + V+ K   NE  WW+     ++G+VP   L
Sbjct: 7   NYEKQENSEISLQAGEVVDVIEK---NESGWWFVSTAEEQGWVPATYL 51

Tks5, also called SH3 and PX domain-containing protein 2A (SH3PXD2A) or Five SH (FISH), is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. It binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. Tks5 contains an N-terminal Phox homology (PX) domain and five SH3 domains. This model characterizes the first SH3 domain of Tks5. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212902 cd11969, SH3_PLCgamma2, Src homology 3 domain of Phospholipase C (PLC) gamma 2

 Score = 35.2 bits (81), Expect = 0.001
 Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 4/39 (10%)

Query: 71  AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW 109
            V ALYDY A  +DELSF  G  I  + K    E   WW
Sbjct: 1   TVKALYDYRAKRSDELSFCKGALIHNVSK----ETGGWW 35

PLCgamma2 is primarily expressed in haematopoietic cells, specifically in B cells. It is activated by tyrosine phosphorylation by B cell receptor (BCR) kinases and is recruited to the plasma membrane where its substrate is located. It is required in pre-BCR signaling and in the maturation of B cells. PLCs catalyze the hydrolysis of phosphatidylinositol (4,5)-bisphosphate [PtdIns(4,5)P2] to produce Ins(1,4,5)P3 and diacylglycerol (DAG). Ins(1,4,5)P3 initiates the calcium signaling cascade while DAG functions as an activator of PKC. PLCgamma contains a Pleckstrin homology (PH) domain followed by an elongation factor (EF) domain, two catalytic regions of PLC domains that flank two tandem SH2 domains, followed by a SH3 domain and C2 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212978 cd12045, SH3_SKAP2, Src Homology 3 domain of Src Kinase-Associated Phosphoprotein 2

 Score = 34.9 bits (80), Expect = 0.001
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)

Query: 75  LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 121
           L+D   +  DELSFK G+ I +L K + N   WW  ++    G VP+
Sbjct: 5   LWDCTGDQPDELSFKRGDTIYILSK-EYNRFGWWVGEMKGTIGLVPK 50

SKAP2, also called SKAP55-Related (SKAP55R) or SKAP55 homolog (SKAP-HOM or SKAP55-HOM), is an immune cell-specific adaptor protein that plays an important role in adhesion and migration of B-cells and macrophages. Binding partners include ADAP (adhesion and degranulation-promoting adaptor protein), YopH, SHPS1, and HPK1. SKAP2 has also been identified as a substrate for lymphoid-specific tyrosine phosphatase (Lyp), which has been implicated in a wide variety of autoimmune diseases. It contains a pleckstrin homology (PH) domain, a C-terminal SH3 domain, and several tyrosine phosphorylation sites. Like SKAP1, SKAP2 is expected to bind primarily to a proline-rich region of ADAP through its SH3 domain; its degradation may be regulated by ADAP. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212749 cd11815, SH3_Eve1_2, Second Src homology 3 domain of ADAM-binding protein Eve-1

 Score = 34.8 bits (80), Expect = 0.001
 Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)

Query: 75  LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           L+D+ A ++D+LS  +GE + +L K D    EW+  K  N  G  P N
Sbjct: 5   LHDFPAEHSDDLSLNSGEIVYLLEKIDT---EWYRGKCKNTTGIFPAN 49

Eve-1, also called SH3 domain-containing protein 19 (SH3D19) or EEN-binding protein (EBP), exists in multiple alternatively spliced isoforms. The longest isoform contains five SH3 domain in the C-terminal region and seven proline-rich motifs in the N-terminal region. It is abundantly expressed in skeletal muscle and heart, and may be involved in regulating the activity of ADAMs (A disintegrin and metalloproteases). Eve-1 interacts with EEN, an endophilin involved in endocytosis and may be the target of the MLL-EEN fusion protein that is implicated in leukemogenesis. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212821 cd11888, SH3_ARHGAP9_like, Src Homology 3 domain of Rho GTPase-activating protein 9 and similar proteins

 Score = 34.7 bits (80), Expect = 0.001
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 7/55 (12%)

Query: 72  VYALYDYE--ANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 122
           V  LY +E    +  ++S K GE  ++L+K ++   +WW  +   ++K  YVP  
Sbjct: 2   VVVLYPFEYTGKDGRKVSIKEGERFLLLKKSND---DWWQVRRPGDSKPFYVPAQ 53

This subfamily is composed of Rho GTPase-activating proteins including mammalian ARHGAP9, and vertebrate ARHGAPs 12 and 27. RhoGAPs (or ARHGAPs) bind to Rho proteins and enhance the hydrolysis rates of bound GTP. ARHGAP9 functions as a GAP for Rac and Cdc42, but not for RhoA. It negatively regulates cell migration and adhesion. It also acts as a docking protein for the MAP kinases Erk2 and p38alpha, and may facilitate cross-talk between the Rho GTPase and MAPK pathways to control actin remodeling. ARHGAP27, also called CAMGAP1, shows GAP activity towards Rac1 and Cdc42. It binds the adaptor protein CIN85 and may play a role in clathrin-mediated endocytosis. ARHGAP12 has been shown to display GAP activity towards Rac1. It plays a role in regulating HFG-driven cell growth and invasiveness. ARHGAPs in this subfamily contain SH3, WW, Pleckstin homology (PH), and RhoGAP domains. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 54

>gnl|CDD|212909 cd11976, SH3_VAV1_2, C-terminal (or second) Src homology 3 domain of VAV1 protein

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           A YD+ A +  ELS K G+ I +L K  +    WW  ++  + G+ P N
Sbjct: 4   ARYDFCARDRSELSLKEGDIIKILNKKGQQ--GWWRGEIYGRVGWFPAN 50

VAV1 is expressed predominantly in the hematopoietic system and it plays an important role in the development and activation of B and T cells. It is activated by tyrosine phosphorylation to function as a guanine nucleotide exchange factor (GEF) for Rho GTPases following cell surface receptor activation, triggering various effects such as cytoskeletal reorganization, transcription regulation, cell cycle progression, and calcium mobilization. It also serves as a scaffold protein and has been shown to interact with Ku70, Socs1, Janus kinase 2, SIAH2, S100B, Abl gene, ZAP-70, SLP76, and Syk, among others. VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The C-terminal SH3 domain of Vav1 interacts with a wide variety of proteins including cytoskeletal regulators (zyxin), RNA-binding proteins (Sam68), transcriptional regulators, viral proteins, and dynamin 2. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212836 cd11903, SH3_Nck2_3, Third Src Homology 3 domain of Nck2 adaptor protein

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 20/52 (38%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRN 122
           V  LY + +   +EL+F+ GE + V+ K  EN+ EWW  K +  + G VP+N
Sbjct: 3   VQTLYPFSSVTEEELNFEKGETMEVIEK-PENDPEWWKCKNSRGQVGLVPKN 53

Nck2 (also called Nckbeta or Growth factor receptor-bound protein 4, Grb4) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds neuronal signaling proteins such as ephrinB and Disabled-1 (Dab-1) exclusively. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The third SH3 domain of Nck appears to prefer ligands with a PxAPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212691 cd11757, SH3_SH3BP4, Src Homology 3 domain of SH3 domain-binding protein 4

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V A+ DY   N   L F  G+ + VL   D +  EWW++    + GY+P
Sbjct: 2   VVAIKDYCPTNFTTLKFSKGDHLYVL---DTSGGEWWYAHNTTEMGYIP 47

SH3 domain-binding protein 4 (SH3BP4) is also called transferrin receptor trafficking protein (TTP). SH3BP4 is an endocytic accessory protein that interacts with endocytic proteins including clathrin and dynamin, and regulates the internalization of the transferrin receptor (TfR). SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 52

>gnl|CDD|212802 cd11869, SH3_p40phox, Src Homology 3 domain of the p40phox subunit of NADPH oxidase

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           AL+D+  N+  EL+FK G+ I +L + +   ++W    +    G  P
Sbjct: 4   ALFDFTGNSKLELNFKAGDVIFLLSRVN---KDWLEGTVRGATGIFP 47

p40phox, also called Neutrophil cytosol factor 4 (NCF-4), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p40phox positively regulates NADPH oxidase in both phosphatidylinositol-3-phosphate (PI3P)-dependent and PI3P-independent manner. It contains an N-terminal PX domain, a central SH3 domain, and a C-terminal PB1 domain that interacts with p67phox. The SH3 domain of p40phox binds to canonical polyproline and noncanonical motifs at the C-terminus of p47phox. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212744 cd11810, SH3_RUSC1_like, Src homology 3 domain of RUN and SH3 domain-containing proteins 1 and 2

 Score = 34.3 bits (79), Expect = 0.002
 Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 71  AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
            V AL  + A ++ +LSF+ G+ + V+ + D+   +W      + +G VP
Sbjct: 1   VVRALCHHVATDSGQLSFRKGDILRVIARVDD---DWLLCTRGSTKGLVP 47

RUSC1 and RUSC2, that were originally characterized in silico. They are adaptor proteins consisting of RUN, leucine zipper, and SH3 domains. RUSC1, also called NESCA (New molecule containing SH3 at the carboxy-terminus), is highly expressed in the brain and is translocated to the nuclear membrane from the cytoplasm upon stimulation with neurotrophin. It plays a role in facilitating neurotrophin-dependent neurite outgrowth. It also interacts with NEMO (or IKKgamma) and may function in NEMO-mediated activation of NF-kB. RUSC2, also called Iporin, is expressed ubiquitously with highest amounts in the brain and testis. It interacts with the small GTPase Rab1 and the Golgi matrix protein GM130, and may function in linking GTPases to certain intracellular signaling pathways. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 50

>gnl|CDD|212918 cd11985, SH3_Stac2_C, C-terminal Src homology 3 domain of SH3 and cysteine-rich domain-containing protein 2 (Stac2)

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           ALY +     ++L  + G+ ++V+   D++  +WW  K  ++ G+ P N +
Sbjct: 4   ALYKFLPQENNDLPLQPGDRVMVV---DDSNEDWWKGKSGDRVGFFPANFV 51

Stac proteins are putative adaptor proteins that contain a cysteine-rich C1 domain and one or two SH3 domains at the C-terminus. There are three mammalian members (Stac1, Stac2, and Stac3) of this family. Stac2 contains a single SH3 domain at the C-terminus unlike Stac1 and Stac3, which contain two C-terminal SH3 domains. Stac1 and Stac2 have been found to be expressed differently in mature dorsal root ganglia (DRG) neurons. Stac1 is mainly expressed in peptidergic neurons while Stac2 is found in a subset of nonpeptidergic and all trkB+ neurons. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212948 cd12015, SH3_Tks_1, First Src homology 3 domain of Tyrosine kinase substrate (Tks) proteins

 Score = 33.9 bits (78), Expect = 0.002
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 3/49 (6%)

Query: 77  DYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 125
           DY+    +E+S + G+ + V+ K   NE  WW+  L +++G+VP   L 
Sbjct: 7   DYKKQQPNEISLRAGDVVDVIEK---NENGWWFVSLEDEQGWVPATYLE 52

Tks proteins are Src substrates and scaffolding proteins that play important roles in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. Vertebrates contain two Tks proteins, Tks4 (Tyr kinase substrate with four SH3 domains) and Tks5 (Tyr kinase substrate with five SH3 domains), which display partially overlapping but non-redundant functions. Both associate with the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. Tks5 interacts with N-WASP and Nck, while Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. Tks proteins contain an N-terminal Phox homology (PX) domain and four or five SH3 domains. This model characterizes the first SH3 domain of Tks proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212703 cd11769, SH3_CSK, Src Homology 3 domain of C-terminal Src kinase

 Score = 34.2 bits (79), Expect = 0.002
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVL-RKGDENEREWWWSK-LNNKEGYVPRN 122
           A Y++   + ++L FK G+ + ++    D N   W+ +K  + +EG +P N
Sbjct: 6   AKYNFNGASEEDLPFKKGDILTIVAVTKDPN---WYKAKNKDGREGMIPAN 53

CSK is a cytoplasmic (or nonreceptor) tyr kinase containing the Src homology domains, SH3 and SH2, N-terminal to the catalytic tyr kinase domain. They negatively regulate the activity of Src kinases that are anchored to the plasma membrane. To inhibit Src kinases, CSK is translocated to the membrane via binding to specific transmembrane proteins, G-proteins, or adaptor proteins near the membrane. CSK catalyzes the tyr phosphorylation of the regulatory C-terminal tail of Src kinases, resulting in their inactivation. It is expressed in a wide variety of tissues and plays a role, as a regulator of Src, in cell proliferation, survival, and differentiation, and consequently, in cancer development and progression. In addition, CSK also shows Src-independent functions. It is a critical component in G-protein signaling, and plays a role in cytoskeletal reorganization and cell migration. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 57

>gnl|CDD|212868 cd11935, SH3_Nebulette_C, C-terminal Src Homology 3 domain of Nebulette and LIM-nebulette (or Lasp2)

 Score = 34.2 bits (78), Expect = 0.002
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
           A+YDY A + DE+SF+ G+ I+ ++  DE    W +  +    + G +P N
Sbjct: 5   AMYDYSAQDEDEVSFRDGDYIVNVQPIDEG---WMYGTVQRTGRTGMLPAN 52

Nebulette is a cardiac-specific protein that localizes to the Z-disc. It interacts with tropomyosin and is important in stabilizing actin thin filaments in cardiac muscles. Polymorphisms in the nebulette gene are associated with dilated cardiomyopathy, with some mutations resulting in severe heart failure. Nebulette is a 107kD protein that contains an N-terminal acidic region, multiple nebulin repeats, and a C-terminal SH3 domain. LIM-nebulette, also called Lasp2 (LIM and SH3 domain protein 2), is an alternatively spliced variant of nebulette. Although it shares a gene with nebulette, Lasp2 is not transcribed from a muscle-specific promoter, giving rise to its multiple tissue expression pattern with highest amounts in the brain. It can crosslink actin filaments and it affects cell spreading. Lasp2 is a 34kD protein containing an N-terminal LIM domain, three nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 58

>gnl|CDD|213009 cd12076, SH3_Tks4_2, Second Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 33.9 bits (77), Expect = 0.002
 Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
            +Y Y A + DE++ + G  + V++K   N   WW  +   KEG+ P + L
Sbjct: 5   VIYPYTARDQDEINLEKGAVVEVIQK---NLEGWWKIRYQGKEGWAPASYL 52

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the second SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212818 cd11885, SH3_SH3TC, Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains

 Score = 33.8 bits (78), Expect = 0.003
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRNL 123
           A  D+E     ELSF+ G+ I ++  GD      W+   SK + + G+VP N 
Sbjct: 4   AKMDFEGVEPGELSFRQGDSIEII--GDLIPGLQWFVGRSKSSGRVGFVPTNH 54

This subfamily is composed of vertebrate SH3TC proteins and hypothetical fungal proteins containing BAR and SH3 domains. Mammals contain two SH3TC proteins, SH3TC1 and SH3TC2. The function of SH3TC1 is unknown. SH3TC2 is localized in Schwann cells in the peripheral nervous system, where it interacts with Rab11 and plays a role in peripheral nerve myelination. Mutations in SH3TC2 are associated with Charcot-Marie-Tooth disease type 4C, a severe hereditary peripheral neuropathy with symptoms that include progressive scoliosis, delayed age of walking, muscular atrophy, distal weakness, and reduced nerve conduction velocity. SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies. Length = 55

>gnl|CDD|212764 cd11830, SH3_VAV_2, C-terminal (or second) Src homology 3 domain of VAV proteins

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 4/50 (8%)

Query: 74  ALYDYEANNTDELSFKTGECI-IVLRKGDENEREWWWSKLNNKEGYVPRN 122
           A YD+ A +  ELS K G+ + I  +KG +    WW  ++N + G+ P  
Sbjct: 4   ARYDFCARDMRELSLKEGDVVKIYNKKGQQG---WWRGEINGRIGWFPST 50

VAV proteins function both as cytoplasmic guanine nucleotide exchange factors (GEFs) for Rho GTPases and scaffold proteins and they play important roles in cell signaling by coupling cell surface receptors to various effector functions. They play key roles in processes that require cytoskeletal reorganization including immune synapse formation, phagocytosis, cell spreading, and platelet aggregation, among others. Vertebrates have three VAV proteins (VAV1, VAV2, and VAV3). VAV proteins contain several domains that enable their function: N-terminal calponin homology (CH), acidic, RhoGEF (also called Dbl-homologous or DH), Pleckstrin Homology (PH), C1 (zinc finger), SH2, and two SH3 domains. The SH3 domain of VAV is involved in the localization of proteins to specific sites within the cell, by interacting with proline-rich sequences within target proteins. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212867 cd11934, SH3_Lasp1_C, C-terminal Src Homology 3 domain of LIM and SH3 domain protein 1

 Score = 33.8 bits (77), Expect = 0.003
 Identities = 16/51 (31%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
           A+YDY A + DE+SF+ G+ I+ +++ D+    W +  +      G +P N
Sbjct: 7   AVYDYNAADEDEVSFQDGDTIVNVQQIDDG---WMYGTVERTGDTGMLPAN 54

Lasp1 is a cytoplasmic protein that binds focal adhesion proteins and is involved in cell signaling, migration, and proliferation. It is overexpressed in several cancer cells including breast, ovarian, bladder, and liver. In cancer cells, it can be found in the nucleus; its degree of nuclear localization correlates with tumor size and poor prognosis. Lasp1 is a 36kD protein containing an N-terminal LIM domain, two nebulin repeats, and a C-terminal SH3 domain. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 59

>gnl|CDD|212834 cd11901, SH3_Nck1_2, Second Src Homology 3 domain of Nck1 adaptor protein

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 3/54 (5%)

Query: 69  NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           N   Y  ++Y A   DELS   G  +IV+ K  +    WW    N + G+ P N
Sbjct: 1   NLPAYVKFNYTAEREDELSLVKGTKVIVMEKCSDG---WWRGSYNGQVGWFPSN 51

Nck1 (also called Nckalpha) plays a crucial role in connecting signaling pathways of tyrosine kinase receptors and important effectors in actin dynamics and cytoskeletal remodeling. It binds and activates RasGAP, resulting in the downregulation of Ras. It is also involved in the signaling of endothilin-mediated inhibition of cell migration. Nck adaptor proteins regulate actin cytoskeleton dynamics by linking proline-rich effector molecules to protein tyrosine kinases and phosphorylated signaling intermediates. They contain three SH3 domains and a C-terminal SH2 domain. They function downstream of the PDGFbeta receptor and are involved in Rho GTPase signaling and actin dynamics. Vertebrates contain two Nck adaptor proteins: Nck1 (also called Nckalpha) and Nck2, which show partly overlapping functions but also bind distinct targets. The second SH3 domain of Nck appears to prefer ligands containing the APxxPxR motif. SH3 domains are protein interaction domains that usually bind to proline-rich ligands with moderate affinity and selectivity, preferentially a PxxP motif. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|212864 cd11931, SH3_SH3RF3_2, Second Src Homology 3 domain of SH3 domain containing ring finger 3, an E3 ubiquitin-protein ligase

 Score = 33.7 bits (77), Expect = 0.003
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 7/51 (13%)

Query: 74  ALYDYEANNTDE----LSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           ALYD+E  + D+    L+F   E + V+R+ DEN   W    L +K G  P
Sbjct: 4   ALYDFEIKDKDQDKDCLTFTKDEILTVIRRVDEN---WAEGMLGDKIGIFP 51

SH3RF3 is also called POSH2 (Plenty of SH3s 2) or SH3MD4 (SH3 multiple domains protein 4). It is a scaffold protein with E3 ubiquitin-protein ligase activity. It was identified in the screen for interacting partners of p21-activated kinase 2 (PAK2). It may play a role in regulating JNK mediated apoptosis in certain conditions. It also interacts with GTP-loaded Rac1. SH3RF3 is highly homologous to SH3RF1; it also contains an N-terminal RING finger domain and four SH3 domains. This model represents the second SH3 domain, located C-terminal of the first SH3 domain at the N-terminal half, of SH3RF3. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 55

>gnl|CDD|213011 cd12078, SH3_Tks4_3, Third Src homology 3 domain of Tyrosine kinase substrate with four SH3 domains

 Score = 33.5 bits (76), Expect = 0.003
 Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 3/52 (5%)

Query: 73  YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           Y + D++    D +SF+ G  + V+ K   N   WW+ ++ +KEG+ P   +
Sbjct: 3   YTIADFQTTIPDGISFQAGLKVEVIEK---NLSGWWYIQIEDKEGWAPATFI 51

Tks4, also called SH3 and PX domain-containing protein 2B (SH3PXD2B) or HOFI, is a Src substrate and scaffolding protein that plays an important role in the formation of podosomes and invadopodia, the dynamic actin-rich structures that are related to cell migration and cancer cell invasion. It is required in the formation of functional podosomes, EGF-induced membrane ruffling, and lamellipodia generation. It plays an important role in cellular attachment and cell spreading. Tks4 is essential for the localization of MT1-MMP (membrane-type 1 matrix metalloproteinase) to invadopodia. It contains an N-terminal Phox homology (PX) domain and four SH3 domains. This model characterizes the third SH3 domain of Tks4. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|212804 cd11871, SH3_p67phox_N, N-terminal (or first) Src Homology 3 domain of the p67phox subunit of NADPH oxidase

 Score = 33.3 bits (76), Expect = 0.004
 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 75  LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           LY++     +EL    G  + VL+KG +N   W     N K+G VP N L
Sbjct: 5   LYEFVPETKEELQVLPGNIVFVLKKGTDN---WATVVFNGKKGLVPCNFL 51

p67phox, also called Neutrophil cytosol factor 2 (NCF-2), is a cytosolic subunit of the phagocytic NADPH oxidase complex (also called Nox2 or gp91phox) which plays a crucial role in the cellular response to bacterial infection. NADPH oxidase catalyzes the transfer of electrons from NADPH to oxygen during phagocytosis forming superoxide and reactive oxygen species. p67phox plays a regulatory role and contains N-terminal TPR, first SH3 (or N-terminal or central SH3), PB1, and C-terminal SH3 domains. It binds, via its C-terminal SH3 domain, to a proline-rich region of p47phox and upon activation, this complex assembles with flavocytochrome b558, the Nox2-p22phox heterodimer. Concurrently, RacGTP translocates to the membrane and interacts with the TPR domain of p67phox, which leads to the activation of NADPH oxidase. The PB1 domain of p67phox binds to its partner PB1 domain in p40phox, and this facilitates the assembly of p47phox-p67phox at the membrane. The N-terminal SH3 domain increases the affinity of p67phox for the oxidase complex. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

>gnl|CDD|212747 cd11813, SH3_SGSM3, Src Homology 3 domain of Small G protein Signaling Modulator 3

 Score = 33.2 bits (76), Expect = 0.004
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 3/47 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           AL D+E ++ DEL F+  + I ++ + DE+    W  +LN   G+ P
Sbjct: 4   ALLDFERHDDDELGFRKNDIITIISQKDEH---CWVGELNGLRGWFP 47

SGSM3 is also called Merlin-associated protein (MAP), RUN and SH3 domain-containing protein (RUSC3), RUN and TBC1 domain-containing protein 3 (RUTBC3), Rab GTPase-activating protein 5 (RabGAP5), or Rab GAP-like protein (RabGAPLP). It is expressed ubiquitously and functions as a regulator of small G protein RAP- and RAB-mediated neuronal signaling. It is involved in modulating NGF-mediated neurite outgrowth and differentiation. It also interacts with the tumor suppressor merlin and may play a role in the merlin-associated suppression of cell growth. SGSM3 contains TBC, SH3, and RUN domains. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 53

>gnl|CDD|213010 cd12077, SH3_Tks5_2, Second Src homology 3 domain of Tyrosine kinase substrate with five SH3 domains

 Score = 33.1 bits (75), Expect = 0.004
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 3/47 (6%)

Query: 78  YEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           Y +   DE+ F+ G  + V++K   N   WW+ +   KEG+ P + L
Sbjct: 9   YTSQGKDEIGFEKGVTVEVIQK---NLEGWWYIRYLGKEGWAPASYL 52

Tks5, also called SH3 and PX domain-containing protein 2A (SH3PXD2A) or Five SH (FISH), is a scaffolding protein and Src substrate that is localized in podosomes, which are electron-dense structures found in Src-transformed fibroblasts, osteoclasts, macrophages, and some invasive cancer cells. It binds and regulates some members of the ADAMs family of transmembrane metalloproteases, which function as sheddases and mediators of cell and matrix interactions. It is required for podosome formation, degradation of the extracellular matrix, and cancer cell invasion. Tks5 contains an N-terminal Phox homology (PX) domain and five SH3 domains. This model characterizes the second SH3 domain of Tks5. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies. Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG0515|consensus	752		100.0
PF14604	49	SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3	99.6
PF07653	55	SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3	99.49
KOG2070|consensus	661		99.41
PF00018	48	SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Ho	99.36
KOG2199|consensus	462		99.32
smart00326	58	SH3 Src homology 3 domains. Src homology 3 (SH3) d	99.28
KOG1029|consensus	1118		99.26
KOG1118|consensus	366		99.26
cd00174	54	SH3 Src homology 3 domains; SH3 domains bind to pr	99.24
KOG4225|consensus	489		99.2
KOG4226|consensus	379		99.15
KOG2996|consensus	865		99.13
KOG2856|consensus	472		99.12
KOG4226|consensus	379		99.08
KOG0162|consensus	1106		99.08
KOG4348|consensus	627		99.04
KOG1029|consensus	1118		98.92
KOG4348|consensus	627		98.86
KOG1264|consensus	1267		98.81
KOG4225|consensus	489		98.8
KOG4792|consensus	293		98.79
KOG2546|consensus	483		98.74
KOG1843|consensus	473		98.7
KOG3655|consensus	484		98.61
KOG3875|consensus	362		98.61
KOG1702|consensus	264		98.44
KOG3601|consensus	222		98.38
KOG4278|consensus	1157		98.34
KOG3632|consensus	1335		98.12
KOG3557|consensus	721		98.03
KOG2222|consensus	848		97.98
KOG3523|consensus	695		97.98
KOG2528|consensus	490		97.97
KOG4773|consensus	386		97.7
KOG4792|consensus	293		97.58
KOG0197|consensus	468		97.53
KOG3725|consensus	375		97.43
KOG4575|consensus	874		97.43
KOG3771|consensus	460		97.43
KOG1451|consensus	812		97.41
KOG0609|consensus	542		97.39
KOG3601|consensus	222		97.16
KOG4429|consensus	421		96.95
KOG3775|consensus	482		96.76
KOG3565|consensus	640		96.39
PF13606	30	Ank_3: Ankyrin repeat	96.36
KOG3632|consensus	1335		96.15
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	95.3
PF08239	55	SH3_3: Bacterial SH3 domain; InterPro: IPR013247 S	95.21
PF14603	89	hSH3: Helically-extended SH3 domain; PDB: 1RI9_A.	95.21
KOG0199|consensus	1039		94.97
PRK10884	206	SH3 domain-containing protein; Provisional	94.81
KOG0040|consensus	2399		93.81
smart00287	63	SH3b Bacterial SH3 domain homologues.	93.43
PF06347	55	SH3_4: Bacterial SH3 domain; InterPro: IPR010466 S	93.29
KOG2996|consensus	865		91.36
KOG3812|consensus	475		90.31
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	89.77
KOG3705|consensus	580		88.86
PRK13914	481	invasion associated secreted endopeptidase; Provis	87.96
COG3103	205	SH3 domain protein [Signal transduction mechanisms	85.17
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	83.26
KOG0505|consensus	527		82.5

>KOG0515|consensus

Probab=100.00  E-value=1.1e-35  Score=238.74  Aligned_cols=129  Identities=52%  Similarity=0.973  Sum_probs=124.9

Q ss_pred             hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhhccccCCcccccchhhhhHhhhcccCCcceEEeeccCCCCCCC
Q psy7685           7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDE   85 (137)
Q Consensus         7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dy~~~~~~e   85 (137)
                      .|||||||++++|++| ++|++|||+|.||.+|++++|++.+++|..|++|++.++++++.++.+.+.|+|||+++..||
T Consensus       620 LHCAASCNnv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~vqesmG~mN~G~vYAlwdYeaqf~DE  699 (752)
T KOG0515|consen  620 LHCAASCNNVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYGVQESMGSMNKGVVYALWDYEAQFEDE  699 (752)
T ss_pred             hhhhhhcCchHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHHHHHhhcccccceeEEeeccccccccc
Confidence            5999999999999999 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCCCCC
Q psy7685          86 LSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSAT  135 (137)
Q Consensus        86 Ls~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~~~  135 (137)
                      |+|+.||.++||+++++.+..||+++++|++|+||.||+..++..+|+..
T Consensus       700 Lsf~eGd~lTvirr~d~~eteWWwa~lng~eGyVPRnylgLyPriKprqr  749 (752)
T KOG0515|consen  700 LSFDEGDELTVIRRDDEVETEWWWARLNGEEGYVPRNYLGLYPRIKPRQR  749 (752)
T ss_pred             ccccCCceeEEEecCCcchhhhhhHhhcCcccccchhhhhcCccccchhh
Confidence            99999999999999888788899999999999999999999999988753

>PF14604 SH3_9: Variant SH3 domain; PDB: 2CRE_A 2E5K_A 2CT3_A 2DE0_X 2D8H_A 2DA9_A 2X3X_E 2X3W_D 2KRN_A 2ED0_A

Probab=99.60  E-value=1.3e-15  Score=88.19  Aligned_cols=49  Identities=49%  Similarity=0.971  Sum_probs=43.2

Q ss_pred             EeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCee
Q psy7685          74 ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  125 (137)
Q Consensus        74 al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~  125 (137)
                      |+|+|.++.++||+|++||+|.|+.+.+   .|||.|+.+|+.|+||++||+
T Consensus         1 Al~~y~~~~~dELs~~~Gd~i~v~~~~~---~~W~~g~~~g~~G~~P~~yV~   49 (49)
T PF14604_consen    1 ALYDYEAQDPDELSFKKGDVITVLEKSD---DGWWYGRNTGRTGLFPANYVE   49 (49)
T ss_dssp             ESSCBCSSSTTB-EB-TTEEEEEEEESS---TSEEEEEETTEEEEEEGGGEE
T ss_pred             CCccCCCCCcCEeeEcCCCEEEEEEeCC---CCEEEEEECCEEEEECHHhCC
Confidence            7899999999999999999999998854   459999999999999999985

...

>PF07653 SH3_2: Variant SH3 domain; InterPro: IPR011511 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.49  E-value=5.5e-14  Score=83.11  Aligned_cols=54  Identities=39%  Similarity=0.751  Sum_probs=46.2

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEE-EecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVL-RKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl-~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      +++|++||.+..+++|+|++||+|.|+ +...   .+||.++.+|+.||||.+||+++
T Consensus         1 ~~~a~~d~~~~~~~~Ls~~~Gd~i~v~~~~~~---~~ww~~~~~g~~G~~P~~~v~~~   55 (55)
T PF07653_consen    1 YYRAIFDYVAEDPDELSFKKGDVIEVLGEKDD---DGWWLGENNGRRGWFPSSYVEEI   55 (55)
T ss_dssp             EEEESSSBESSSTTB-EB-TTEEEEEEEEECS---TSEEEEEETTEEEEEEGGGEEEH
T ss_pred             CEEEeEEECCCCCCceEEecCCEEEEEEeecC---CCEEEEEECCcEEEEcHHHEEEC
Confidence            478999999999999999999999999 5543   36999999999999999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This entry represents a variant of the SH3 domain.; PDB: 1I1J_B 1K0X_A 1HJD_A 2KEA_A 1KJW_A 1JXM_A 1JXO_B 2EBP_A 2DL3_A 2EYX_A ....

>KOG2070|consensus

Probab=99.41  E-value=7.8e-14  Score=112.40  Aligned_cols=56  Identities=34%  Similarity=0.673  Sum_probs=51.7

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      .++|-|.|.+.+.|||+|.+||+|+|.+..   ++|||.|.++|+.||||+|||.++..
T Consensus        19 vvrAkf~F~gsNnDELsf~KgDvItVTq~e---eGGWWEGTlng~TGWFPsnYV~eik~   74 (661)
T KOG2070|consen   19 VVRAKFNFQGSNNDELSFSKGDVITVTQVE---EGGWWEGTLNGRTGWFPSNYVREIKS   74 (661)
T ss_pred             EEEEEeecccCCCceeccccCCEEEEEEec---cCcceeccccCccCccchHHHHHHhh
Confidence            478999999999999999999999999985   55799999999999999999999863

>PF00018 SH3_1: SH3 domain; InterPro: IPR001452 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=99.36  E-value=1e-12  Score=75.53  Aligned_cols=46  Identities=52%  Similarity=0.988  Sum_probs=40.1

Q ss_pred             EEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcC
Q psy7685          73 YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPR  121 (137)
Q Consensus        73 ~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~  121 (137)
                      +|+|+|.+...++|+|++||+|.|++..+.   +||.++  .+++.|+||+
T Consensus         1 ~Alydf~~~~~~eLs~~~Gd~i~v~~~~~~---~Ww~~~~~~~~~~G~vP~   48 (48)
T PF00018_consen    1 RALYDFDAEDPDELSFKKGDIIEVLEKSDD---GWWKVRNESTGKEGWVPS   48 (48)
T ss_dssp             EESSCBETSSTTBSEB-TTEEEEEEEESSS---SEEEEEETTTTEEEEEEG
T ss_pred             CCCeeeCCCCCCEEeEECCCEEEEEEecCC---CEEEEEECCCCcEEEeeC
Confidence            589999999999999999999999998654   599999  3479999995

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. The crystal structure of the SH3 domain of the cytoskeletal protein spectrin, and the solution structures of SH3 domains of phospholipase C (PLC-y) and phosphatidylinositol 3-kinase p85 alpha-subunit, have been determined [, , ]. In spite of relatively limited sequence similarity, their overall structures are similar. The domains belong to the alpha+beta structural class, with 5 to 8 beta-strands forming 2 tightly-packed, anti-parallel beta-sheets arranged in a barrel-like structure, and intervening loops sometimes forming helices. Conserved aliphatic and aromatic residues form a hydrophobic core (A11, L23, A29, V34, W42, L52 and V59 in PLC-y []) and a hydrophobic pocket on the molecular surface (L12, F13, W53 and P55 in PLC-y). The conserved core is believed to stabilise the fold, while the pocket is thought to serve as a binding site for target proteins. Conserved carboxylic amino acids located in the loops, on the periphery of the pocket (D14 and E22), may be involved in protein-protein interactions via proline-rich regions. The N- and C-termini are packed in close proximity, indicating that they are independent structural modules.; GO: 0005515 protein binding; PDB: 1UHF_A 1W1F_A 1WA7_A 1SEM_A 1KFZ_A 2SEM_B 1K76_A 3SEM_B 1X2Q_A 2J06_B ....

>KOG2199|consensus

Probab=99.32  E-value=3.3e-13  Score=106.34  Aligned_cols=59  Identities=39%  Similarity=0.628  Sum_probs=52.9

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      ....+++|||||++.+.+||+|++||+|+|++..+.+   ||+|+..+..|+||+|||...-
T Consensus       213 ~~~rkVRALYDFeAaE~nELsFkaGdIItVLd~s~~~---WWKG~~~~~~GlFPsnfVT~~l  271 (462)
T KOG2199|consen  213 TVVRKVRALYDFEAAEDNELSFKAGDIITVLDDSDPN---WWKGENHRGIGLFPSNFVTADL  271 (462)
T ss_pred             ccchhhhhhhcccccCCCccceecCcEEEEcccCCcc---hhccccCCcccccchhhhhhhh
Confidence            3456799999999999999999999999999987666   9999999999999999997654

>smart00326 SH3 Src homology 3 domains

Probab=99.28  E-value=1.8e-11  Score=71.52  Aligned_cols=55  Identities=47%  Similarity=0.825  Sum_probs=48.3

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC-CeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-g~~G~~P~~yv~~~  127 (137)
                      ..++|+|+|.+...++|+|++||+|.++...   ..|||.++.. ++.||||.+|++.+
T Consensus         3 ~~~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~---~~~w~~~~~~~~~~G~vP~~~v~~~   58 (58)
T smart00326        3 PQVRALYDYTAQDPDELSFKKGDIITVLEKS---DDGWWKGRLGRGKEGLFPSNYVEEI   58 (58)
T ss_pred             cEEEEeeeeCCCCCCCCCCCCCCEEEEEEcC---CCCeEEEEeCCCCEEEEchHHEEEC
Confidence            4578999999999999999999999999875   3469999955 99999999999763

Src homology 3 (SH3) domains bind to target proteins through sequences containing proline and hydrophobic amino acids. Pro-containing polypeptides may bind to SH3 domains in 2 different binding orientations.

>KOG1029|consensus

Probab=99.26  E-value=2.4e-12  Score=108.22  Aligned_cols=61  Identities=46%  Similarity=0.760  Sum_probs=52.3

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec-CCCCCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY-PRVQPS  133 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~-~~~~~~  133 (137)
                      ..+.|+|||.++.+|||+|++||+|.|+.++++.   ||.|+.+|..|+||+|||... .+.+|.
T Consensus      1054 ~qviamYdY~AqndDELsF~kgdiI~Vlnkdepe---WW~Ge~ng~sGLFPSNYV~k~ttd~dps 1115 (1118)
T KOG1029|consen 1054 CQVIAMYDYEAQNDDELSFKKGDIINVLNKDEPE---WWSGERNGKSGLFPSNYVQKQTTDGDPS 1115 (1118)
T ss_pred             ceeEEeeccccCCcccccccCCCEEEecCCCChh---hhcccccCccccCccccccccccCCChh
Confidence            3567999999999999999999999999987554   999999999999999999544 444443

>KOG1118|consensus

Probab=99.26  E-value=3e-12  Score=98.15  Aligned_cols=62  Identities=31%  Similarity=0.576  Sum_probs=56.1

Q ss_pred             ccCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          66 ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        66 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ......|+|+|||++++..||.|++||+|+|+.+.+++   ||.|+..|..|+||.|||+++-+.
T Consensus       303 ~~~~p~cralYdFepenEgEL~fkeGDlI~l~~QIden---WyeG~~~g~sG~FPvnYv~vlvpl  364 (366)
T KOG1118|consen  303 QMDQPCCRALYDFEPENEGELDFKEGDLITLTNQIDEN---WYEGEKHGESGMFPVNYVEVLVPL  364 (366)
T ss_pred             cccchhheeeeccCCCCCCccCcccCceeeehhhcCcc---hhhheecCccCccccceeEEeccC
Confidence            34556799999999999999999999999999998776   999999999999999999998654

>cd00174 SH3 Src homology 3 domains; SH3 domains bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs; they play a role in the regulation of enzymes by intramolecular interactions, changing the subcellular localization of signal pathway components and mediate multiprotein complex assemblies

Probab=99.24  E-value=3.8e-11  Score=69.30  Aligned_cols=51  Identities=49%  Similarity=0.878  Sum_probs=45.0

Q ss_pred             eEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCC-eeEEEcCCCee
Q psy7685          72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRNLLG  125 (137)
Q Consensus        72 ~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g-~~G~~P~~yv~  125 (137)
                      ++|+|+|.+...++|+|.+||+|.+++..   ..|||.++..+ +.||||.+|++
T Consensus         2 ~~a~~~~~~~~~~~l~~~~Gd~v~v~~~~---~~~w~~~~~~~~~~G~vP~~~v~   53 (54)
T cd00174           2 VRALYDYDARDPDELSFKKGDIIEVLEKS---DDGWWEGRLLGGKRGLFPSNYVE   53 (54)
T ss_pred             EEEEEeeCCCCCCCCCCCCCCEEEEEEcC---CCCeEEEEECCCCEEEEccccCc
Confidence            68999999999999999999999999874   34699999544 99999999985

>KOG4225|consensus

Probab=99.20  E-value=2.8e-11  Score=96.42  Aligned_cols=56  Identities=32%  Similarity=0.662  Sum_probs=53.0

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      .++|+|+|.++...||+|++||+|.|+++.+.+   |+.|+.+|+.|+||++||+.++.
T Consensus       232 ~aralf~F~~qt~kEL~~~kGDIVyI~rkvD~n---WyeGEhhGr~GifP~sYvE~~~~  287 (489)
T KOG4225|consen  232 AARALFDFEAQTPKELPFNKGDIVYILRKVDQN---WYEGEHHGRVGIFPASYVEILTP  287 (489)
T ss_pred             hhhheeccccCCccccccCCCCEEEEEeeccCc---eeeeeecceecceechheeecCc
Confidence            378999999999999999999999999998877   99999999999999999999975

>KOG4226|consensus

Probab=99.15  E-value=7e-11  Score=89.65  Aligned_cols=58  Identities=26%  Similarity=0.549  Sum_probs=52.4

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ..+++.|.|.++.++||++.+|..|+|++++.++   ||+|..+|+.||||+|||.+.-+.
T Consensus       108 t~AvVKf~Y~a~~eDELsLtKGtrv~vmEKssDG---WWrG~~ng~VGWFPSNYv~E~~ds  165 (379)
T KOG4226|consen  108 TPAVVKFNYVAEREDELSLTKGTRVTVMEKSSDG---WWRGSYNGQVGWFPSNYVTEEVDS  165 (379)
T ss_pred             CceEEEEeeccccccccccccCcEEEEEEeccCc---ceecccCCeeccccccceehhccc
Confidence            3488899999999999999999999999998655   999999999999999999987543

>KOG2996|consensus

Probab=99.13  E-value=3.3e-11  Score=99.17  Aligned_cols=59  Identities=29%  Similarity=0.591  Sum_probs=52.2

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      -+.++|-|||.+..-.+|+|++||+|.|+.+... ++|||+|+.+|+.||||++||++..
T Consensus       805 ~g~AvarYdf~ard~~eLSlk~GDvV~i~~k~g~-d~GWWkGevngrvGwFPstYVee~~  863 (865)
T KOG2996|consen  805 VGTAVARYDFCARDMRELSLKEGDVVKIYDKVGE-DQGWWKGEVNGRVGWFPSTYVEEDD  863 (865)
T ss_pred             eeeeeeccccCCCchhhcccccCCEEEEehhccc-cCceecceecCcccccccccccccC
Confidence            3457788999999999999999999999988654 5899999999999999999998753

>KOG2856|consensus

Probab=99.12  E-value=1e-11  Score=97.21  Aligned_cols=56  Identities=38%  Similarity=0.622  Sum_probs=50.1

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC-CeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-g~~G~~P~~yv~~~  127 (137)
                      ..++|||||.+++.+||+|+.||.|..+...+  +.||.+||++ |+.|++|.|||+.+
T Consensus       415 v~vraLYDY~gqE~DElsfkaGd~l~kl~eeD--eqGWC~Grl~~G~vGLyPAnYVe~~  471 (472)
T KOG2856|consen  415 VRVRALYDYAGQEGDELSFKAGDELEKLEEED--EQGWCKGRLDSGRVGLYPANYVECI  471 (472)
T ss_pred             eeEEeeeccCcccccchhhccccHhhhcCCcc--ccccccccccCCcccccchhhhhcc
Confidence            46899999999999999999999999887644  7899999955 99999999999865

>KOG4226|consensus

Probab=99.08  E-value=7.2e-11  Score=89.60  Aligned_cols=59  Identities=34%  Similarity=0.719  Sum_probs=53.1

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      ..++|||+|......||+|.+||.+.|+++.. .++.||+++ ..|+.|+||.|||.++.+
T Consensus       192 ~vVvaLYsFsssndeELsFeKGerleivd~Pe-~DPdWwkarn~~G~vGLVPrNYv~vl~d  251 (379)
T KOG4226|consen  192 HVVVALYSFSSSNDEELSFEKGERLEIVDKPE-NDPDWWKARNARGQVGLVPRNYVVVLSD  251 (379)
T ss_pred             EEEEEEecccCCChhhcccccCceeEeccCCC-CCchHHhhcccCCccceeecceEEEecc
Confidence            45789999999999999999999999999854 467899999 899999999999999864

>KOG0162|consensus

Probab=99.08  E-value=7.3e-11  Score=99.18  Aligned_cols=56  Identities=46%  Similarity=0.851  Sum_probs=50.6

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      .+.+.|+|+|.+++.+||+|++||+|.|+.++   ..|||.|+.+|++||||.+||.++
T Consensus      1051 ~p~~~A~Y~y~gq~~dEls~~~~diIei~~ed---pSGWw~gk~~~keG~~P~~Yv~~~ 1106 (1106)
T KOG0162|consen 1051 NPVCEALYDYPGQDVDELSFKKGDIIEIMRED---PSGWWLGKLNGKEGLFPGNYVTEY 1106 (1106)
T ss_pred             CcceeeeccCCCCCcccccccCCCEEEEeccC---CCcchhhccCCccccccccccccC
Confidence            36699999999999999999999999999875   457999999999999999999753

>KOG4348|consensus

Probab=99.04  E-value=1.3e-10  Score=92.98  Aligned_cols=59  Identities=32%  Similarity=0.653  Sum_probs=54.1

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      ..+|+++|.|+++.++||.|+.||+|.+|.+ +.++-|||.|+++|++|.||-|+|+.++
T Consensus       261 Keycrv~F~Ye~qndDELt~KEgdil~lItK-~cgdaGWweGELnGk~GvFPDNFv~lv~  319 (627)
T KOG4348|consen  261 KEYCRVKFVYEPQNDDELTLKEGDILILITK-NCGDAGWWEGELNGKKGVFPDNFVELVQ  319 (627)
T ss_pred             hhheeeeeeecCCCccceeeccccEEEEecc-cccccceeeeeecCccccCCchhhhhcC
Confidence            3569999999999999999999999999987 4557899999999999999999999886

>KOG1029|consensus

Probab=98.92  E-value=6e-10  Score=94.08  Aligned_cols=61  Identities=36%  Similarity=0.635  Sum_probs=53.9

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ..+|+|||.|++.+.+|++|..||+|.|-.. ..+++||..|..+|+.||||.+||+.++..
T Consensus       693 ~vkyrAly~FeaRs~dEisf~pGDII~V~es-q~aEPGWlaGel~gktGWFPenyvEki~~~  753 (1118)
T KOG1029|consen  693 TVKYRALYPFEARSHDEISFEPGDIIIVFES-QAAEPGWLAGELRGKTGWFPENYVEKIPAV  753 (1118)
T ss_pred             eEEEeeecccccCCcccccccCCCEEEEehh-ccCCcccccceeccccCcCcHHHHhhcccC
Confidence            4568999999999999999999999988765 445789999999999999999999998743

>KOG4348|consensus

Probab=98.86  E-value=3.9e-10  Score=90.24  Aligned_cols=59  Identities=32%  Similarity=0.633  Sum_probs=53.2

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ....|++.|.|.+++++||.|+.||+|.|+....+   |||.|.++|..|+||+|+|.+++.
T Consensus        99 ~~r~c~v~f~Y~pqndDELelkVGDiIeli~eVEe---GWw~G~Lngk~GmFPsNFVkel~~  157 (627)
T KOG4348|consen   99 QARICVVTFAYSPQNDDELELKVGDIIELISEVEE---GWWKGKLNGKVGMFPSNFVKELPT  157 (627)
T ss_pred             cceeEEEEEeecCCCCceeeeeeccHHHhhhHhhh---hhhhceecCcccccchhhceecCC
Confidence            34569999999999999999999999999987744   599999999999999999999864

>KOG1264|consensus

Probab=98.81  E-value=2e-09  Score=91.56  Aligned_cols=60  Identities=33%  Similarity=0.585  Sum_probs=52.4

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCC-eeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g-~~G~~P~~yv~~~~~~  130 (137)
                      +...++|||+|.++.++||+|-+|-+|+.+++.   ++|||+|...| ..+|||+|||+++...
T Consensus       773 ~~vt~kAL~~Yka~r~DELSFpk~aiItnv~ke---eg~wWrGdYGg~iq~wfPsnyVeei~~~  833 (1267)
T KOG1264|consen  773 PQVTVKALYDYKAKRSDELSFPKGAIITNVSKE---EGGWWRGDYGGRIQQWFPSNYVEEISTA  833 (1267)
T ss_pred             cchhhhhhhccccCCcccccccccceeEeeecc---CCceeecccccceeeeccHHHhhhhccc
Confidence            446789999999999999999999999999985   45699999664 5899999999999663

>KOG4225|consensus

Probab=98.80  E-value=3.2e-09  Score=84.84  Aligned_cols=53  Identities=34%  Similarity=0.584  Sum_probs=48.9

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeee
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGL  126 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~  126 (137)
                      .++|||.|.++..+||.|..||+|.|+++++++   |+.|.  .+|..|.||.|||+.
T Consensus       434 ~yrAly~Y~pqnedeLEl~egDii~VmeKcddg---WfvGts~rtg~fGtFPgnyV~~  488 (489)
T KOG4225|consen  434 KYRALYSYRPQNEDELELREGDIIDVMEKCDDG---WFVGTSRRTGKFGTFPGNYVKR  488 (489)
T ss_pred             cceeccccCCCCchhheeccCCEEeeeecccCc---ceeccceecccccccCcccccc
Confidence            379999999999999999999999999998765   99994  899999999999975

>KOG4792|consensus

Probab=98.79  E-value=1.5e-09  Score=80.52  Aligned_cols=57  Identities=32%  Similarity=0.685  Sum_probs=50.7

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~  128 (137)
                      ...++++|||.+...++|.|++|+++.|+++..+.   ||.++ ..|+.|.+|.+||+...
T Consensus       124 ~~~vr~~fdF~G~deeDLPFkkGeiL~I~~K~eeq---WW~Arns~Gk~GmIPvpYVe~~~  181 (293)
T KOG4792|consen  124 AEYVRALFDFNGNDEEDLPFKKGEILRIRDKPEEQ---WWNARNSEGKRGMIPVPYVEKYR  181 (293)
T ss_pred             hhheeeeeccCCCccccCCcccCcEEEEecCcHHH---hhhhhccCCcccceechHHHhhh
Confidence            34577899999999999999999999999987554   99999 89999999999998763

>KOG2546|consensus

Probab=98.74  E-value=5.2e-09  Score=83.41  Aligned_cols=56  Identities=36%  Similarity=0.643  Sum_probs=51.0

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      .+++++|||.+...+||+|.+|-+|.|+.+.++   |||.|..+|..||||.|||+.+.
T Consensus       424 EkVv~iydy~~~KddeLsf~E~ailyv~kkndd---gw~EgV~~~VTglFpgnyve~~~  479 (483)
T KOG2546|consen  424 EKVVAIYDYTADKDDELSFAEGAILYVLKKNDD---GWYEGVQDGVTGLFPGNYVEPLK  479 (483)
T ss_pred             HHHHhhcccccccccccccccccEEEEEEecCC---cchhheecCcceeccCccccccc
Confidence            358899999999999999999999999999654   49999999999999999998774

>KOG1843|consensus

Probab=98.70  E-value=1.1e-08  Score=81.28  Aligned_cols=59  Identities=34%  Similarity=0.715  Sum_probs=52.3

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeee
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  126 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~  126 (137)
                      +....++|+|+|..+...+|+|++||+|+++.+.+. ...||.++.++++|+||.|||+.
T Consensus       414 l~~n~a~a~ysfage~~GDl~f~kgDii~il~ks~s-~~dwwtgr~~~~egifPanyv~~  472 (473)
T KOG1843|consen  414 LEPNIATALYSFAGEQPGDLSFQKGDIITILKKSDS-ANDWWTGRGNGYEGIFPANYVSL  472 (473)
T ss_pred             cCcceeeeeehhccCCCCCcccccCceEEEecCCcc-hhhHHHhhccccccccccceecc
Confidence            344579999999999999999999999999988654 46699999999999999999974

>KOG3655|consensus

Probab=98.61  E-value=1.3e-08  Score=82.05  Aligned_cols=58  Identities=31%  Similarity=0.630  Sum_probs=52.2

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~  128 (137)
                      ....++|+|||++..+.|++|..++.|++|...++   |||.|. -.|+.|+||.|||++++
T Consensus       426 ~~q~A~A~~dyqAAddtEisf~p~d~it~Id~vde---gww~g~~pdG~~glfPaNyV~li~  484 (484)
T KOG3655|consen  426 EPQTARALYDYQAADDTEISFDPPDAITLIDQVDE---GWWTGQGPDGEVGLFPANYVELIE  484 (484)
T ss_pred             cCCCccccccccccCCcccccCCccccccccccCC---ccccccCCCCCcCcccccccccCC
Confidence            56678999999999999999999999999998864   599999 78999999999998763

>KOG3875|consensus

Probab=98.61  E-value=9.3e-09  Score=79.22  Aligned_cols=60  Identities=32%  Similarity=0.494  Sum_probs=50.2

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCC--CeEEEE-e-CCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENER--EWWWSK-L-NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~--gWw~g~-~-~g~~G~~P~~yv~~~~~  129 (137)
                      ..++|+|||.+.++.||+|++||++.|..+.+....  .||..+ . .+..||||.|||+.+..
T Consensus       269 ~~arA~YdF~a~np~ElSlk~Gdml~ia~K~dq~~~~~~gW~lat~dg~~tG~iP~NYvkIi~r  332 (362)
T KOG3875|consen  269 EFARALYDFVARNPVELSLKKGDMLAIASKEDQQGVRCEGWLLATRDGGTTGLIPINYVKIIGR  332 (362)
T ss_pred             HHHHHHhhhhcCCHHHhhhhcCchhhcccccccCCCCCcceeeeeccCCeeeeeehhhhhhhhc
Confidence            568999999999999999999999999887554222  388887 4 67789999999999865

>KOG1702|consensus

Probab=98.44  E-value=1.7e-07  Score=68.59  Aligned_cols=58  Identities=28%  Similarity=0.569  Sum_probs=50.5

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeec
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~  127 (137)
                      ..+..++|+|||.++..++++|.-||.|.-++..+++   |..|.  .+|..|..|+||++-+
T Consensus       205 ~~gktyra~ydysaqdedevsF~dgd~ivnvq~iddG---Wmygtv~rtg~tGmlpaNyie~v  264 (264)
T KOG1702|consen  205 CTGKTYRAFYDYSAQDEDEVSFVDGDYIVNVQSIDDG---WMYGTVVRTGWTGMLPANYIEFV  264 (264)
T ss_pred             CCCccchhhccCcccCcceeEEecCCeEEEEEeccCC---ceeeEEEeccccCCCchhheeeC
Confidence            3456789999999999999999999999888887654   98887  8899999999999853

>KOG3601|consensus

Probab=98.38  E-value=1.8e-07  Score=68.68  Aligned_cols=55  Identities=25%  Similarity=0.530  Sum_probs=49.9

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      .+..++|||.++.+.+|.|++|+++.|+...+..   ||.|+..|+.|+||++|+...
T Consensus       164 ~yqQa~~df~~~pp~ql~f~~gq~~~v~~~ss~~---ww~Gs~lg~agiFpagyv~p~  218 (222)
T KOG3601|consen  164 YYQQALYDFQPQPPGQLAFRRGQQIQVLDSSSPF---WWFGSKLGRAGIFPAGYVAPS  218 (222)
T ss_pred             hhhhhcCCCCCCCchhhccccCCcceeecCCCcc---hhhccccCceeeecCcccccc
Confidence            4567999999999999999999999999998776   999999999999999998654

>KOG4278|consensus

Probab=98.34  E-value=4.8e-07  Score=76.34  Aligned_cols=58  Identities=31%  Similarity=0.506  Sum_probs=49.7

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      ...++|||||.+.++..|++.+|+.+.|+.-..  ++.|..++ .+|+ ||||+||+..+..
T Consensus        90 pNLFVALYDFvasGdntLSitKGeklRvLGYN~--NgEWcEartKNGq-GWVPSNyItPvNS  148 (1157)
T KOG4278|consen   90 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNK--NGEWCEARTKNGQ-GWVPSNYITPVNS  148 (1157)
T ss_pred             CceeEeeeeeeccccceeeeecCceEEEeeecC--CCcceeecccCCC-ccccccccccccc
Confidence            346899999999999999999999999998765  34698888 5566 9999999988754

>KOG3632|consensus

Probab=98.12  E-value=2.4e-06  Score=74.30  Aligned_cols=59  Identities=31%  Similarity=0.594  Sum_probs=49.7

Q ss_pred             CCcceEEeeccCCC--------CCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEAN--------NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~~--------~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      +...++|+|||++.        ...||.|++|++|.|+..-|  ..|++.|+.+|+.|+||+|+|.+++
T Consensus      1137 parifVAlfDYDpl~MSpNpDAaEeELpFregqIikV~GDkD--adgFY~GE~ngr~GlIPcNmvae~~ 1203 (1335)
T KOG3632|consen 1137 PARIFVALFDYDPLQMSPNPDAAEEELPFREGQIIKVLGDKD--ADGFYMGELNGRRGLIPCNMVAEQP 1203 (1335)
T ss_pred             cceeeEeeeccCccccCCCCChhhhccccccCcEEEEecccc--ccceeeccccccccccccccccccc
Confidence            34568999999873        34689999999999997654  4489999999999999999999875

>KOG3557|consensus

Probab=98.03  E-value=1.1e-06  Score=73.40  Aligned_cols=60  Identities=40%  Similarity=0.707  Sum_probs=52.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~  131 (137)
                      ...+++.+|||.+.+..||++.+||++.|+..    ..+||+++ ..|+.|+||+|.+..++...
T Consensus       499 ~~k~~~~~Ydf~arNs~ELsV~k~E~LEvl~d----~R~WW~~kn~~G~~GyvP~nIL~~~~~~~  559 (721)
T KOG3557|consen  499 GKKWVLVLYDFQARNSSELSVKKGEVLEVLDD----GRKWWKVKNGHGRAGYVPSNILAPLQPEH  559 (721)
T ss_pred             cceeeeeehhhhcccchhhhhhhhhhhhhhhc----cccceeccCccCCCCCcchhhhccCCCcc
Confidence            34478899999999999999999999999864    45699999 78999999999999886543

>KOG2222|consensus

Probab=97.98  E-value=9.8e-07  Score=72.08  Aligned_cols=57  Identities=28%  Similarity=0.581  Sum_probs=50.8

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      ..+++|+.||.....+||.|+++|+|+|+...++-   .|.|+.+|-+||||..+|+.+.
T Consensus       548 ~krakal~df~r~dddelgfrkndiitiisekdeh---cwvgelnglrgwfpakfvelld  604 (848)
T KOG2222|consen  548 AKRAKALHDFAREDDDELGFRKNDIITIISEKDEH---CWVGELNGLRGWFPAKFVELLD  604 (848)
T ss_pred             hHHHHHHhhhhhccccccccccccEEEEeecCCcc---eeeeccccccccchHHHHHHHH
Confidence            34578999999999999999999999999876554   9999999999999999998774

>KOG3523|consensus

Probab=97.98  E-value=7.2e-07  Score=74.13  Aligned_cols=59  Identities=20%  Similarity=0.432  Sum_probs=52.3

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~  129 (137)
                      +..++.+...|.+..+++|++..+|++.|+++..+|   |..|.  .+|..||||..|+++|..
T Consensus       607 dcpQv~~~~sy~a~q~Del~Le~~Dvv~v~~k~~DG---Wl~GeRl~Dge~GWFP~~~veeI~~  667 (695)
T KOG3523|consen  607 DCPQVQCVHSYKAKQPDELTLELADVVNVLQKTPDG---WLEGERLRDGERGWFPSSYVEEITN  667 (695)
T ss_pred             CCChhheeeccccCCCceeeeehhhhhhhhhcCCCc---cccccccccCccCcchHHHHHHhcC
Confidence            445678889999999999999999999999997654   99998  789999999999998854

>KOG2528|consensus

Probab=97.97  E-value=3.1e-06  Score=68.16  Aligned_cols=59  Identities=19%  Similarity=0.358  Sum_probs=52.0

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~  130 (137)
                      ..++++|||......|++...|+++.+.....  ..|||.++ ..|.+|+||..||+++...
T Consensus         3 sk~RamyDf~~E~~sElsi~~~evl~i~~e~~--~~GwLeg~Nsrge~GlfPa~yVeV~~~a   62 (490)
T KOG2528|consen    3 SKARAMYDFQSEGHSELSIWEGEVLSITSEDV--IEGWLEGSNSRGERGLFPASYVEVTRLA   62 (490)
T ss_pred             cchhhhcchhhcccccccccccceeeecCccc--ccccccCCCccCccCCCcccceeeeccc
Confidence            35789999999999999999999999988754  45899999 8899999999999998643

>KOG4773|consensus

Probab=97.70  E-value=4.8e-06  Score=65.31  Aligned_cols=109  Identities=18%  Similarity=0.237  Sum_probs=72.4

Q ss_pred             Cchhhhhh-cccceecccccCChhhhhhhhccccCC---cccccchhhhhHhhhcccCCcceEEeeccCCCCCCCCCCCC
Q psy7685          15 TLAVCSLS-FVLYCIFATTHSDHETAAVKCEEDEEG---FEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKT   90 (137)
Q Consensus        15 ~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~al~dy~~~~~~eLs~~~   90 (137)
                      .+|+-++. ++...++....-|.+...+........   +-.+..+..+  .....+....+.+++||.+....||.|++
T Consensus       119 slPi~~l~~p~l~~fffvsp~D~~dVpeai~r~~Prt~~~ks~~~skas--ni~~~~~~q~~~a~~df~gns~~EL~l~a  196 (386)
T KOG4773|consen  119 SLPIGRLGGPGLRPFFFVSPYDSEDVPEAIRRLRPRTRKWKSDGVSKAS--NIVLGMAAQRAEASFDFPGNSKLELNLVA  196 (386)
T ss_pred             hcchhhcCCCCceeeeeeccchHhhhhHHHHhcCchhhhccccccCccc--cccchhhhHHHHhhccCCCCccceeeeeh
Confidence            45677777 777788777777754444333222111   0000000000  01111233557889999999999999999


Q ss_pred             CCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          91 GECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        91 Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      |+++.++.++   +.+||.|+..+.+||+|..|+..+.
T Consensus       197 gdV~~~~~r~---ek~W~~gk~R~~~g~yp~sF~~~ld  231 (386)
T KOG4773|consen  197 GDVEFLLSRD---EKYWLLGKVRGLTGYYPDSFVKQLD  231 (386)
T ss_pred             hhHHHHHhhc---ccceeeeeeccccccccHHhhhhhc
Confidence            9999998886   4459999999999999999998874

>KOG4792|consensus

Probab=97.58  E-value=0.00021  Score=53.48  Aligned_cols=59  Identities=20%  Similarity=0.296  Sum_probs=47.3

Q ss_pred             ceEEeeccCCC--CCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          71 AVYALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        71 ~~~al~dy~~~--~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      +++++.+-.+.  ....|.+++||+|.|.+...   .|.|+|+++|+.|.||.+||+......|
T Consensus       229 ~Arv~q~RVPnAYDkTaL~levGdiVkVTk~ni---nGqwegElnGk~G~fPfThvrf~d~~~~  289 (293)
T KOG4792|consen  229 YARVIQKRVPNAYDKTALALEVGDIVKVTKKNI---NGQWEGELNGKIGHFPFTHVRFTDVQNP  289 (293)
T ss_pred             heeeehhcCCCccChhhhhhhcCcEEEEEeecc---CceeeeeecCccccccceeEEeeccCCc
Confidence            45666665543  45679999999999998864   4599999999999999999998865444

>KOG0197|consensus

Probab=97.53  E-value=2.8e-05  Score=63.64  Aligned_cols=56  Identities=34%  Similarity=0.799  Sum_probs=47.1

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCE-EEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGEC-IIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~-i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~  127 (137)
                      ...++|+|+|.+..+.+|+|.+|++ ..+++..   +..||+++  ..+..|++|.|||...
T Consensus        11 ~~~~valyd~~s~~~~dLsf~~Gd~~~~~~~~~---~~~Ww~ar~~~~~~~g~ip~N~v~~~   69 (468)
T KOG0197|consen   11 ETIVVALYDYASRTPEDLSFRKGDVVLILLETT---NGDWWRARSLQLGQEGYIPSNYVARN   69 (468)
T ss_pred             cceEEEeccccCCCccccccccCceEEEeeccC---ChhHHHHHHhhcCCCCcCcCceeecc
Confidence            4568999999999999999999999 6666553   34599988  4789999999999875

>KOG3725|consensus

Probab=97.43  E-value=3.1e-05  Score=58.87  Aligned_cols=58  Identities=33%  Similarity=0.497  Sum_probs=51.0

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ..+++++|||++....||++-..++|+|...... +..|..|+..++.|-+|.+|++.+
T Consensus       317 trkArVlyDYdAa~s~ElslladeiitVyslpGM-D~dwlmgErGnkkGKvPvtYlELL  374 (375)
T KOG3725|consen  317 TRKARVLYDYDAALSQELSLLADEIITVYSLPGM-DADWLMGERGNKKGKVPVTYLELL  374 (375)
T ss_pred             ccceeeeecccccchhhhhhhhcceEEEEecCCC-ChHHhhhhhcCCCCCcchhHHHhc
Confidence            4568999999999999999999999999876543 466999999999999999999865

>KOG4575|consensus

Probab=97.43  E-value=0.00017  Score=60.78  Aligned_cols=54  Identities=26%  Similarity=0.524  Sum_probs=45.0

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--e-CCeeEEEcCCCeeecC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--L-NNKEGYVPRNLLGLYP  128 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~-~g~~G~~P~~yv~~~~  128 (137)
                      .++|+|.+.++..++|.|..||+|.+++..    .|||++.  . +...|+||+|+|..+.
T Consensus        10 ~vrA~y~w~ge~eGdl~f~egDlie~trI~----dgkwwi~lhrNk~~~g~fpsNFvhcLd   66 (874)
T KOG4575|consen   10 MVRALYAWPGEREGDLKFTEGDLIEQTRIE----DGKWWILLHRNKDEDGLFPSNFVHCLD   66 (874)
T ss_pred             eEEeeccCCCCcccccceecccceeEEeec----cceeeeeeeecccccccCcccceeecc
Confidence            589999999999999999999999998873    3577665  3 4567999999997664

>KOG3771|consensus

Probab=97.43  E-value=6.3e-05  Score=61.13  Aligned_cols=56  Identities=34%  Similarity=0.322  Sum_probs=45.5

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeee
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  126 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~  126 (137)
                      .-+++++|||.++..++|+|+.|++|.|+...+  ...||.|++.|..+-++.+|+..
T Consensus       400 ~~~v~a~~dy~a~~~deLsf~~gd~i~vi~s~~--~~e~~eg~~mg~ke~~~~~~~~~  455 (460)
T KOG3771|consen  400 LYKVKALHDYAAQDTDELSFEAGDVILVIPSDN--PEEQDEGWLMGVKESDWNGLFPL  455 (460)
T ss_pred             ccceeccccccccccccccccCCCEEEEecCCC--ccchhhHHHhhhcccccccceec
Confidence            345889999999999999999999999998543  45799999877776666666643

>KOG1451|consensus

Probab=97.41  E-value=0.00015  Score=60.69  Aligned_cols=57  Identities=30%  Similarity=0.518  Sum_probs=48.1

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ..++.++|.-.+....+++|..|.++.-+....  +.||..|+++|.+|++|.|||+.+
T Consensus       756 ~rk~k~lyAc~a~h~selsf~~gt~f~nv~~S~--e~Gwl~GtLnGktglip~nyve~l  812 (812)
T KOG1451|consen  756 SRRVKTLYACTADHHSELSFEPGTIFTNVYESN--EDGWLVGTLNGKTGLIPSNYVEPL  812 (812)
T ss_pred             cccccceeccCCCCcccccccCcceeeeecccC--CCCceeeecCCCcccCcccccCcC
Confidence            445778888888899999999999998666443  558999999999999999999853

>KOG0609|consensus

Probab=97.39  E-value=4.6e-05  Score=62.84  Aligned_cols=55  Identities=29%  Similarity=0.616  Sum_probs=44.5

Q ss_pred             cceEEeeccCCCCCC-------CCCCCCCCEEEEEEecCCCCCCeEEEEeC-----CeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTD-------ELSFKTGECIIVLRKGDENEREWWWSKLN-----NKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-----g~~G~~P~~yv~~~  127 (137)
                      .+++|+|||++..++       .|+|++||++.|+.+++.+   ||.++..     +..|++|+..++..
T Consensus       215 ~~vra~FdYdP~~D~~IPCkEagl~F~~GDILqIv~qdD~n---WWQA~~~~~~~~~~AGLiPS~~~qer  281 (542)
T KOG0609|consen  215 VFVRALFDYDPKEDDLIPCKEAGLPFQRGDILQIVSQDDPN---WWQARRVGDPFGGLAGLIPSKELQER  281 (542)
T ss_pred             eeehhhcCcCcccCCcccchhcCCcccccceeeeccCCCcc---hhhhhcccCccccccccccCHHHHHH
Confidence            568899999987665       4899999999999998777   9999832     45799998766543

>KOG3601|consensus

Probab=97.16  E-value=4.1e-05  Score=56.42  Aligned_cols=53  Identities=32%  Similarity=0.645  Sum_probs=45.6

Q ss_pred             eEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeee
Q psy7685          72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  126 (137)
Q Consensus        72 ~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~  126 (137)
                      ++++++|.+...+||+|.+|+.|.++...+  +..|.+.++.|..|++|.||.+.
T Consensus         3 a~a~n~f~a~i~dELsFlkg~~lk~l~~~d--~~nw~~ael~g~~g~~P~Nai~~   55 (222)
T KOG3601|consen    3 AVAKNDFLAGIRDELSFLKGDNLKILNMED--DINWYKAELDGPEGFIPKNAIRM   55 (222)
T ss_pred             hhhhhhhhhcCcccceeecCCceEecchHH--hhhhhhHhhcCccccCccccccc
Confidence            567899999999999999999999988754  33488888999999999999854

>KOG4429|consensus

Probab=96.95  E-value=0.00023  Score=55.12  Aligned_cols=55  Identities=20%  Similarity=0.143  Sum_probs=47.7

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      .+.++|.|.+...++|...+|+++.+-++.   ..|||.|++.|..|-||..|+++.+
T Consensus       365 lcdafYSfqarqddel~~e~gditif~Ekk---eeg~~f~rl~gd~~hf~Aa~iEea~  419 (421)
T KOG4429|consen  365 LCDAFYSFQARQDDELGGEIGDITIFDEKK---EEGPTFCRLLGDFEHFHAAEIEEAL  419 (421)
T ss_pred             HhhhhhccccccccccCCcccceeeecCcc---cCCCceeeeccccCCCcHHHHHHhc
Confidence            478999999999999999999998776654   4569999999999999999988754

>KOG3775|consensus

Probab=96.76  E-value=0.0007  Score=54.00  Aligned_cols=57  Identities=18%  Similarity=0.348  Sum_probs=49.3

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~  129 (137)
                      ..-++++-|.+..++||.+..||-|.|-...++-   |.+|.  .+|++|+||+.|+-+++.
T Consensus       263 ~THR~~~rFvPRHpDELeLEIgDav~Ve~eadD~---W~~G~NlRTG~~GIFPA~ya~evd~  321 (482)
T KOG3775|consen  263 QTHRAVFRFVPRHPDELELEIGDAVLVEAEADDF---WFEGFNLRTGERGIFPAFYAHEVDG  321 (482)
T ss_pred             hhhhhhhhccCCCcceeeeecCCeeEeeecccch---hhccccccccccccccceeEEecCC
Confidence            4467899999999999999999999888776655   88888  889999999999988853

>KOG3565|consensus

Probab=96.39  E-value=0.00079  Score=57.47  Aligned_cols=62  Identities=24%  Similarity=0.444  Sum_probs=53.6

Q ss_pred             ccCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685          66 ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        66 ~~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~  129 (137)
                      .+..+++.|+|.|.++.++++++..|+++.+++.+.  +.||-+++  .++..|+||.+|+.....
T Consensus       575 ~p~~~~~~a~~~~~~~s~~~~si~~~~il~~ie~~~--g~gwt~~r~~~~~~~g~~Ptsyl~~~~~  638 (640)
T KOG3565|consen  575 SPPIRTSKALYAFEGQSEGTISIDPGEILQVIEEDK--GDGWTRGRLEPNGEKGYVPTSYLDVTET  638 (640)
T ss_pred             CCCccceecccCcCCCCCCccccCcchhHHHHhhcc--cCCCCCCCCCCCCcCCCCCccccccccc
Confidence            345677899999999999999999999999998855  45899998  788999999999987654

>PF13606 Ank_3: Ankyrin repeat

Probab=96.36  E-value=0.0014  Score=33.54  Aligned_cols=24  Identities=0%  Similarity=-0.227  Sum_probs=21.7

Q ss_pred             hhhhhhcCCCchhhhhh-cccceec
Q psy7685           6 IQKIHFTCTTLAVCSLS-FVLYCIF   29 (137)
Q Consensus         6 ~~~~~a~~~~~~~~~~l-~~g~~~~   29 (137)
                      ..|.|+++|+.++++.| ++|+++.
T Consensus         5 ~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    5 PLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             HHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36999999999999999 9999874

>KOG3632|consensus

Probab=96.15  E-value=0.0081  Score=53.21  Aligned_cols=60  Identities=22%  Similarity=0.385  Sum_probs=49.1

Q ss_pred             cceEEeeccCCC------CCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCCC
Q psy7685          70 GAVYALYDYEAN------NTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        70 ~~~~al~dy~~~------~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~  131 (137)
                      ..+.|.|+|.+.      ...||.+..|+.|+|....+  +.|++.|+ ..|++|++|+|+|+.+++.+
T Consensus       448 q~~~arySynPFegpNenpeaelpltAg~yiYiyGdmd--EdgfyegeL~dgrrglvPsnFVe~v~d~~  514 (1335)
T KOG3632|consen  448 QPFTARYSYNPFEGPNENPEAELPLTAGYYIYIYGDMD--EDGFYEGELRDGRRGLVPSNFVEVVTDTK  514 (1335)
T ss_pred             ceEEEEEeccCCcCCCCCCccccccccceEEEEecCCC--ccccceeeeecccccCCCchheEEeccch
Confidence            447889998872      24579999999999987655  45899999 88999999999999987543

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=95.30  E-value=0.0085  Score=30.92  Aligned_cols=26  Identities=12%  Similarity=-0.226  Sum_probs=23.3

Q ss_pred             hhhhhcCCCchhhhhh-cccceecccc
Q psy7685           7 QKIHFTCTTLAVCSLS-FVLYCIFATT   32 (137)
Q Consensus         7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~   32 (137)
                      .|.||..++.+++++| ++|+++.+.+
T Consensus         6 Lh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    6 LHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             HHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            6999999999999999 9999887653

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>PF08239 SH3_3: Bacterial SH3 domain; InterPro: IPR013247 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=95.21  E-value=0.041  Score=31.53  Aligned_cols=37  Identities=24%  Similarity=0.578  Sum_probs=28.8

Q ss_pred             CCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCee
Q psy7685          87 SFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLG  125 (137)
Q Consensus        87 s~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~  125 (137)
                      .+..|+.|.++.....  .+|++.+ .+|..||+...||+
T Consensus        18 ~l~~g~~v~v~~~~~~--~~W~~V~~~~g~~GwV~~~~l~   55 (55)
T PF08239_consen   18 QLPKGEKVTVLGESGD--GNWYKVRTYDGKTGWVSSSYLS   55 (55)
T ss_dssp             EEETTSEEEEEEEETT----EEEEEEETTEEEEEEGGCEE
T ss_pred             EEeCCCEEEEEEEcCC--cEEEEEECcCCcEEEEEccccC
Confidence            4577899999987542  2399995 89999999999874

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. A homologue of the SH3 domain has been found in a number of different bacterial proteins including glycyl-glycine endopeptidase, bacteriocin and some hypothetical proteins.; PDB: 3PVQ_B 3NPF_B 3H41_A 2KQ8_A 2KRS_A 2KYB_A 2KT8_A.

>PF14603 hSH3: Helically-extended SH3 domain; PDB: 1RI9_A

Probab=95.21  E-value=0.029  Score=35.96  Aligned_cols=43  Identities=30%  Similarity=0.367  Sum_probs=28.6

Q ss_pred             CCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeec
Q psy7685          82 NTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        82 ~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~  127 (137)
                      +.-+|.+++|+++.|++..+.+   -|.|| ..|+-|+|+.+++-..
T Consensus        29 G~kDLpi~~GE~LeVI~~t~~~---kvlCRN~~GKYGYV~~~~L~~~   72 (89)
T PF14603_consen   29 GGKDLPIKPGEILEVIQFTDDN---KVLCRNSEGKYGYVLRSHLLPL   72 (89)
T ss_dssp             -TTB----TT-B-EEEEESSSS---EEEEEETTTEEEEEEGGGS---
T ss_pred             CcccCCcCCCCEEEEEEeCCCC---eEEEeCCCCceeEEEHHHccCC
Confidence            4568999999999999987544   89999 8899999999887544

>KOG0199|consensus

Probab=94.97  E-value=0.031  Score=48.60  Aligned_cols=53  Identities=23%  Similarity=0.423  Sum_probs=42.8

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCee
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG  125 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~  125 (137)
                      .++|.-+|+....+.|.|++||.|+||+....  +-||+|.  .+++.|.||.+-|-
T Consensus       376 p~~a~~~~d~~ep~aLh~~kgD~IvVIegs~a--~y~WfgQn~Rn~kvG~Fprsvvt  430 (1039)
T KOG0199|consen  376 PAVARETYDSIEPGALHLTKGDEIVVIEGSGA--GYDWFGQNKRNQKVGTFPRSVVT  430 (1039)
T ss_pred             CceeeeeccccCCCceeeccCCeEEEEecCCc--cceeeccccccceecccCcceee
Confidence            35555667778899999999999999987542  3499996  78999999998776

>PRK10884 SH3 domain-containing protein; Provisional

Probab=94.81  E-value=0.036  Score=41.12  Aligned_cols=41  Identities=15%  Similarity=0.353  Sum_probs=33.3

Q ss_pred             CCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          87 SFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        87 s~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      .+..|+.++|+...+  +.+|.+.+ .+|++|||+..|+...+.
T Consensus        49 ~l~~G~~v~vl~~~~--~~~w~~Vr~~~G~~GWV~~~~Ls~~p~   90 (206)
T PRK10884         49 TLNAGEEVTLLQVNA--NTNYAQIRDSKGRTAWIPLKQLSTTPS   90 (206)
T ss_pred             EEcCCCEEEEEEEcC--CCCEEEEEeCCCCEEeEEHHHhcCCcc
Confidence            467899999998754  24699999 789999999999876654

>KOG0040|consensus

Probab=93.81  E-value=0.00083  Score=61.37  Aligned_cols=57  Identities=28%  Similarity=0.685  Sum_probs=49.5

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      .+.|+|+|...++.+.+.++||+++++.....+   ||.++.+.+.|++|..||+.+.+.
T Consensus       970 ~v~alyd~q~kSprev~mKkgDvltll~s~nkd---wwkve~~d~qg~vpa~yvk~~~~~ 1026 (2399)
T KOG0040|consen  970 CVLALYDYQEKSPREVTMKKGDVLTLLNSINKD---WWKVEVNDRQGFVPAAYVKRLDPG 1026 (2399)
T ss_pred             HHHHHHHHHhcCHHHHHHhhhhHHHHHhhcccc---cccchhhhhcCcchHHHHHHhccC
Confidence            467899999999999999999999887665444   999999999999999999987554

>smart00287 SH3b Bacterial SH3 domain homologues

Probab=93.43  E-value=0.2  Score=29.28  Aligned_cols=35  Identities=26%  Similarity=0.561  Sum_probs=26.9

Q ss_pred             CCCCCCEEEEEEecCCCCCCeEEEEe-CCeeEEEcCCCe
Q psy7685          87 SFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLL  124 (137)
Q Consensus        87 s~~~Gd~i~vl~~~~~~~~gWw~g~~-~g~~G~~P~~yv  124 (137)
                      .+..|+.+.++.....   +|.+.+. +|..||++..++
T Consensus        26 ~l~~g~~v~i~~~~~~---~W~~v~~~~g~~Gwi~~~~~   61 (63)
T smart00287       26 TLKKGDKVKVLGVDGQ---DWAKITYGSGQRGYVPGYVV   61 (63)
T ss_pred             EecCCCEEEEEEccCC---ceEEEEcCCCCEEEEEeeee
Confidence            4678999999876321   5999995 599999977655

>PF06347 SH3_4: Bacterial SH3 domain; InterPro: IPR010466 SH3 (src Homology-3) domains are small protein modules containing approximately 50 amino acid residues [, ]

Probab=93.29  E-value=0.25  Score=28.43  Aligned_cols=35  Identities=20%  Similarity=0.445  Sum_probs=27.6

Q ss_pred             CCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCe
Q psy7685          86 LSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL  124 (137)
Q Consensus        86 Ls~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv  124 (137)
                      ..+.+|..+.|+..    ..+|.+.+.+|..||++...|
T Consensus        19 ~~l~~g~~v~v~~~----~~~W~~V~~~g~~GWv~~~~l   53 (55)
T PF06347_consen   19 ARLEPGVPVRVIEC----RGGWCKVRADGRTGWVHKSLL   53 (55)
T ss_pred             EEECCCCEEEEEEc----cCCeEEEEECCeEEeEEeeec
Confidence            45678888888854    335999999999999988765

They are found in a great variety of intracellular or membrane-associated proteins [, , ] for example, in a variety of proteins with enzymatic activity, in adaptor proteins that lack catalytic sequences and in cytoskeletal proteins, such as fodrin and yeast actin binding protein ABP-1. The SH3 domain has a characteristic fold which consists of five or six beta-strands arranged as two tightly packed anti-parallel beta sheets. The linker regions may contain short helices []. The surface of the SH3-domain bears a flat, hydrophobic ligand-binding pocket which consists of three shallow grooves defined by conservative aromatic residues in which the ligand adopts an extended left-handed helical arrangement. The ligand binds with low affinity but this may be enhanced by multiple interactions. The region bound by the SH3 domain is in all cases proline-rich and contains PXXP as a core-conserved binding motif. The function of the SH3 domain is not well understood but they may mediate many diverse processes such as increasing local concentration of proteins, altering their subcellular location and mediating the assembly of large multiprotein complexes []. This family consists of several hypothetical bacterial proteins of unknown function, but that contain an SH-3 region.

>KOG2996|consensus

Probab=91.36  E-value=0.11  Score=44.21  Aligned_cols=44  Identities=20%  Similarity=0.526  Sum_probs=35.1

Q ss_pred             CCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685          84 DELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        84 ~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~  129 (137)
                      .-|.+..|+++.++.-+.  ++.||.|+  .++..|+||++-|...+.
T Consensus       625 P~l~~~~gdvlel~~~d~--~s~~w~gr~~~sr~sg~fpss~vkp~~~  670 (865)
T KOG2996|consen  625 PRLVLQEGDVLELLKGDA--ESSWWEGRNHGSRESGNFPSSTVKPCPS  670 (865)
T ss_pred             CceEecCCceeehhcCCC--CCcccccCCccCCccCCCCccccCcCCC
Confidence            358899999998876543  55799999  567789999999987654

>KOG3812|consensus

Probab=90.31  E-value=0.13  Score=41.03  Aligned_cols=47  Identities=19%  Similarity=0.555  Sum_probs=33.8

Q ss_pred             eEEeeccCCCCCC-------CCCCCCCCEEEEEEecCCCCCCeEEEE--e-CCeeEEEcC
Q psy7685          72 VYALYDYEANNTD-------ELSFKTGECIIVLRKGDENEREWWWSK--L-NNKEGYVPR  121 (137)
Q Consensus        72 ~~al~dy~~~~~~-------eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~-~g~~G~~P~  121 (137)
                      +++..+|.+.-.+       .++|...|.|-|-++-..+   ||.|+  . .+..||+|+
T Consensus        61 V~tnv~Y~gslde~~Pv~g~aisF~~kDFlHIkeKynnD---WWIGRlVkeg~e~gFiPs  117 (475)
T KOG3812|consen   61 VRTNVSYDGSLDEDSPVQGHAISFEAKDFLHIKEKYNND---WWIGRLVKEGCEIGFIPS  117 (475)
T ss_pred             EEeccccCCccCCCCCCCCceeeeccccceeehhhcccc---hhHHHHhhcCCccccccc
Confidence            3455678765443       4788899998888776444   99999  3 345799996

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=89.77  E-value=0.14  Score=29.56  Aligned_cols=33  Identities=12%  Similarity=-0.196  Sum_probs=21.4

Q ss_pred             hhhhhhcCCCchhhhhh-cccceecccccCChhhh
Q psy7685           6 IQKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETA   39 (137)
Q Consensus         6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~   39 (137)
                      -.|.||..|+.+++++| +.|+++....... .|+
T Consensus        19 ~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G-~Tp   52 (56)
T PF13857_consen   19 PLHWAARYGHSEVVRLLLQNGADPNAKDKDG-QTP   52 (56)
T ss_dssp             HHHHHHHHT-HHHHHHHHHCT--TT---TTS---H
T ss_pred             HHHHHHHcCcHHHHHHHHHCcCCCCCCcCCC-CCH
Confidence            36999999999999999 9999998776653 444

>KOG3705|consensus

Probab=88.86  E-value=0.54  Score=38.44  Aligned_cols=56  Identities=18%  Similarity=0.162  Sum_probs=40.7

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeee
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGL  126 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~  126 (137)
                      +.....++++..++..+|+.++.||+|.|-...=+   |.-+|.  ..++.|+||+--|++
T Consensus       508 nAHn~ivi~aH~prt~~ei~l~vGD~vgvAGNHWd---GySKG~Nr~t~~~GlfPSyKvre  565 (580)
T KOG3705|consen  508 NAHNVIVIEAHIPRTNKEIDLKVGDKVGVAGNHWD---GYSKGTNRQTYKEGLFPSYKVRE  565 (580)
T ss_pred             cccceEEEEecCCCcccccCcccCCeeeecccccc---cccccccccccccCCCccceeee
Confidence            34457899999999999999999999988643111   233444  567899999866554

>PRK13914 invasion associated secreted endopeptidase; Provisional

Probab=87.96  E-value=1.1  Score=37.39  Aligned_cols=41  Identities=22%  Similarity=0.264  Sum_probs=32.0

Q ss_pred             CCCCCCCEEEEEEecCCCCCCeEEEEe-CCeeEEEcCCCeeecCC
Q psy7685          86 LSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        86 Ls~~~Gd~i~vl~~~~~~~~gWw~g~~-~g~~G~~P~~yv~~~~~  129 (137)
                      -++..|+.|.|+...   ..||++.+. +|+.|||-..||..-+.
T Consensus       103 gsl~~G~~V~Vl~~~---~ngW~kI~~~~GktGwV~~~YLs~~~~  144 (481)
T PRK13914        103 TSIKGGTKVTVETTE---SNGWHKITYNDGKTGFVNGKYLTDKVT  144 (481)
T ss_pred             eeecCCCEEEEeecc---cCCeEEEEcCCCCEEEEecccccCCCc
Confidence            367899999997532   346999996 59999999999886543

>COG3103 SH3 domain protein [Signal transduction mechanisms]

Probab=85.17  E-value=1.6  Score=32.35  Aligned_cols=40  Identities=23%  Similarity=0.389  Sum_probs=32.6

Q ss_pred             CCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecC
Q psy7685          87 SFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        87 s~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~  128 (137)
                      ++++|+.++|+....  ..||...+ ..|+.|||+..++..-+
T Consensus        49 ~i~~Ge~vtvl~~~~--~~~~~qI~~~~g~t~wi~~~~lt~e~   89 (205)
T COG3103          49 SIKAGEKVTVLGTDG--NTGYYQIRDSSGRTGWILSKNLTSEP   89 (205)
T ss_pred             EecCCcEEEEEEEcC--cccEEEEEecCCceEEEechhhcccc
Confidence            678999999998854  34699999 78999999988876654

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=83.26  E-value=0.68  Score=26.14  Aligned_cols=34  Identities=18%  Similarity=-0.062  Sum_probs=23.2

Q ss_pred             hhhhhhcCCCchhhhhh-cccceecccccCChhhhh
Q psy7685           6 IQKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAA   40 (137)
Q Consensus         6 ~~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~   40 (137)
                      ..|.|+..|++++++.| +.|.++... ..+..|+.
T Consensus         4 ~lh~A~~~g~~~~~~~Ll~~~~din~~-d~~g~t~l   38 (54)
T PF13637_consen    4 PLHWAARSGNLEIVKLLLEHGADINAQ-DEDGRTPL   38 (54)
T ss_dssp             HHHHHHHTT-HHHHHHHHHTTSGTT-B--TTS--HH
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCCCCCC-CCCCCCHH
Confidence            36899999999999999 899987666 33344443

...

>KOG0505|consensus

Probab=82.50  E-value=0.5  Score=39.50  Aligned_cols=40  Identities=15%  Similarity=0.117  Sum_probs=31.6

Q ss_pred             hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhhcccc
Q psy7685           7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKCEEDE   47 (137)
Q Consensus         7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~~~   47 (137)
                      -|.||+|+++.+++.| .+|+++.+. .+|...+.+.|+...
T Consensus       110 lhaaascg~~~i~~~li~~gA~~~av-Nsdg~~P~dl~e~ea  150 (527)
T KOG0505|consen  110 LHAAASCGYLNIVEYLIQHGANLLAV-NSDGNMPYDLAEDEA  150 (527)
T ss_pred             chhhcccccHHHHHHHHHhhhhhhhc-cCCCCCccccccCcc
Confidence            3999999999999999 999988554 455677777776653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	137
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		2e-32
1ycs_B	239	P53-53bp2 Complex Length = 239		2e-32
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		4e-25
3gf9_A	295	Crystal Structure Of Human Intersectin 2 Rhogef Dom		6e-08
2drk_A	59	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		7e-08
2drm_A	58	Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 L		8e-08
1udl_A	98	The Solution Structure Of The Fifth Sh3 Domain Of I		3e-07
4gbq_A	74	Solution Nmr Structure Of The Grb2 N-Terminal Sh3 D		4e-07
1gri_A	217	Grb2 Length = 217		7e-07
3jv3_A	283	Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l		2e-06
1k76_A	62	Solution Structure Of The C-Terminal Sem-5 Sh3 Doma		2e-06
2pz1_A	466	Crystal Structure Of Auto-Inhibited Asef Length = 4		4e-06
1wyx_A	69	The Crystal Structure Of The P130cas Sh3 Domain At		4e-06
1ad5_A	438	Src Family Kinase Hck-Amp-Pnp Complex Length = 438		5e-06
1qcf_A	454	Crystal Structure Of Hck In Complex With A Src Fami		5e-06
1oeb_A	62	MonaGADS SH3C DOMAIN Length = 62		5e-06
2oi3_A	86	Nmr Structure Analysis Of The Hematopoetic Cell Kin		6e-06
2d0n_A	59	Crystal Structure Of The C-Terminal Sh3 Domain Of T		7e-06
2dx1_A	482	Crystal Structure Of Rhogef Protein Asef Length = 4		7e-06
4hck_A	72	Human Hck Sh3 Domain, Nmr, 25 Structures Length = 7		7e-06
1uti_A	58	MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE L		7e-06
3nhn_A	193	Crystal Structure Of The Src-Family Kinase Hck Sh3-		7e-06
3sem_A	60	Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Le		7e-06
1h3h_A	60	Structural Basis For Specific Recognition Of An Rxx		7e-06
2a08_A	60	Structure Of The Yeast Yhh6 Sh3 Domain Length = 60		7e-06
1bu1_A	57	Src Family Kinase Hck Sh3 Domain Length = 57		7e-06
1sem_A	58	Structural Determinants Of Peptide-Binding Orientat		7e-06
1aze_A	56	Nmr Structure Of The Complex Between The C32s-Y7v M		8e-06
3nmz_D	116	Crytal Structure Of Apc Complexed With Asef Length		1e-05
4esr_A	69	Molecular And Structural Characterization Of The Sh		1e-05
2dl7_A	73	Solution Structure Of The Second Sh3 Domain Of Huma		1e-05
1wa7_A	65	Sh3 Domain Of Human Lyn Tyrosine Kinase Length = 65		2e-05
2yt6_A	109	Solution Structure Of The Sh3_1 Domain Of Yamaguchi		2e-05
1oot_A	60	Crystal Structure Of The Sh3 Domain From A S. Cerev		2e-05
2xmf_A	60	Myosin 1e Sh3 Length = 60		2e-05
1x2q_A	88	Solution Structure Of The Sh3 Domain Of The Signal		2e-05
2jte_A	64	Third Sh3 Domain Of Cd2ap Length = 64		3e-05
2ysq_A	81	Solution Structure Of The Sh3 Domain From Rho Guani		3e-05
2hda_A	64	Yes Sh3 Domain Length = 64		3e-05
3reb_B	90	Hiv-1 Nef Protein In Complex With Engineered Hck-Sh		3e-05
2kgt_A	72	Solution Structure Of Sh3 Domain Of Ptk6 Length = 7		4e-05
1uj0_A	62	Crystal Structure Of Stam2 Sh3 Domain In Complex Wi		4e-05
2l0a_A	72	Solution Nmr Structure Of Signal Transducing Adapte		4e-05
2x3w_D	60	Structure Of Mouse Syndapin I (Crystal Form 2) Leng		4e-05
3rea_B	61	Hiv-1 Nef Protein In Complex With Engineered Hck-Sh		5e-05
2dil_A	69	Solution Structure Of The Sh3 Domain Of The Human P		5e-05
2ydl_A	69	Crystal Structure Of Sh3c From Cin85 Length = 69		5e-05
1x2p_A	68	Solution Structure Of The Sh3 Domain Of The Protein		6e-05
2yun_A	79	Solution Structure Of The Sh3 Domain Of Human Nostr		7e-05
3haj_A	486	Crystal Structure Of Human Pacsin2 F-Bar Domain (P2		7e-05
3m0p_A	62	Crystal Structure Of The R21d Mutant Of Alpha-Spect		7e-05
3m0s_A	57	Crystal Structure Of The R21d Mutant Of Alpha-Spect		7e-05
2k2m_A	68	Structural Basis Of Pxxdy Motif Recognition In Sh3		7e-05
2k6d_A	62	Cin85 Sh3-C Domain In Complex With Ubiquitin Length		8e-05
2k9g_A	73	Solution Structure Of The Third Sh3 Domain Of The C		9e-05
2d8h_A	80	Solution Structure Of The Sh3 Domain Of Hypothetica		9e-05
1a0n_B	69	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		1e-04
1g83_A	165	Crystal Structure Of Fyn Sh3-Sh2 Length = 165		1e-04
1azg_B	67	Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene		1e-04
2dbm_A	73	Solution Structures Of The Sh3 Domain Of Human Sh3-		1e-04
3uf4_A	164	Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn P		1e-04
3iql_A	71	Crystal Structure Of The Rat Endophilin-A1 Sh3 Doma		2e-04
1uhc_A	79	Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of		2e-04
2vvk_A	56	Grb2 Sh3c (1) Length = 56		2e-04
3ua6_A	64	Crystal Structure Of The Human Fyn Sh3 Domain Lengt		2e-04
2a37_A	59	Solution Structure Of The T22g Mutant Of N-Terminal		2e-04
1hd3_A	62	A-Spectrin Sh3 Domain F52y Mutant Length = 62		2e-04
1fyn_A	62	Phosphotransferase Length = 62		2e-04
2bz8_A	58	N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Pepti		3e-04
3c0c_A	73	X-Ray Crystal Structure Of The Rat Endophilin A2 Sh		3e-04
1m27_C	61	Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX		3e-04
2rol_A	64	Structural Basis Of Pxxdy Motif Recognition In Sh3		3e-04
1avz_C	57	V-1 Nef Protein In Complex With Wild Type Fyn Sh3 D		3e-04
3thk_A	73	Structure Of Sh3 Chimera With A Type Ii Ligand Link		3e-04
1shf_A	59	Crystal Structure Of The Sh3 Domain In Human Fyn; C		3e-04
3h0h_A	73	Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Le		3e-04
1uue_A	62	A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length =		3e-04
2da9_A	70	Solution Structure Of The Third Sh3 Domain Of Sh3-D		3e-04
2krn_A	60	High Resolution Structure Of The Second Sh3 Domain		4e-04
2ed1_A	76	Solution Structure Of The Sh3 Domain Of 130 Kda Pho		4e-04
2ed0_A	78	Solution Structure Of The Sh3 Domain Of Abl Interac		4e-04
1pwt_A	61	Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Tw		4e-04
1neg_A	83	Crystal Structure Analysis Of N-And C-Terminal Labe		4e-04
2f2x_A	62	Alpha-Spectrin Sh3 Domain R21g Mutant Length = 62		5e-04
3i9q_A	57	Crystal Structure Of The Triple Mutant S19g-P20d-R2		5e-04
2lj3_A	63	Pfbd: High-Throughput Strategy Of Backbone Fold Det		5e-04
1m8m_A	62	Solid-State Mas Nmr Structure Of The A-Spectrin Sh3		5e-04
2cdt_A	62	Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62		6e-04
2f2v_A	62	Alpha-Spectrin Sh3 Domain A56g Mutant Length = 62		6e-04
2f2w_A	62	Alpha-Spectrin Sh3 Domain R21a Mutant Length = 62		6e-04
1efn_A	59	Hiv-1 Nef Protein In Complex With R96i Mutant Fyn S		6e-04
2h8h_A	535	Src Kinase In Complex With A Quinazoline Inhibitor		7e-04
3h0f_A	73	Crystal Structure Of The Human Fyn Sh3 R96w Mutant		7e-04
1wxb_A	68	Solution Structure Of The Sh3 Domain From Human Epi		7e-04
1bk2_A	57	A-Spectrin Sh3 Domain D48g Mutant Length = 57		7e-04
3rbb_B	61	Hiv-1 Nef Protein In Complex With Engineered Hck Sh		8e-04
3cqt_A	79	N53i V55l Mutant Of Fyn Sh3 Domain Length = 79		8e-04

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 12  TCTTLAVCS-LSFVLYCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
           +C  + VC  L      +FA T+SD +TAA K              LY VQEK+GI+N G
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 171
Query: 71  AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
            +YAL+DYE  N DEL  K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLGLYPR+
Sbjct: 172 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 231
Query: 131 QP 132
           +P
Sbjct: 232 KP 233

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score =  133 bits (335), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 12  TCTTLAVCS-LSFVLYCIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNNG 70
           +C  + VC  L      +FA T+SD +TAA K              LY VQEK+GI+N G
Sbjct: 112 SCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG 171
Query: 71  AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
            +YAL+DYE  N DEL  K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLGLYPR+
Sbjct: 172 VIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRI 231
Query: 131 QP 132
           +P
Sbjct: 232 KP 233

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/123 (43%), Positives = 75/123 (60%), Gaps = 3/123 (2%)
Query: 12  TCTTLAVCSLSFVLY--CIFATTHSDHETAAVKXXXXXXXXXXXXXXLYSVQEKLGILNN 69
           +C    +C ++ V +   IFATT SD  TA  K              L  V++ +G++N+
Sbjct: 96  SCNDTVIC-MALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNS 154
Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR 129
           GAVYAL+DY A   DELSF+ GE + VLR+    E +WWW+ L+ +EGYVPRN  GL+PR
Sbjct: 155 GAVYALWDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPR 214
Query: 130 VQP 132
           V+P
Sbjct: 215 VKP 217

>pdb|3GF9|A Chain A, Crystal Structure Of Human Intersectin 2 Rhogef Domain Length = 295

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V A+YDY ANN DELSF  G+ I V+ K D +   WW  ++N   G  P N + +     
Sbjct: 21  VIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSNYVKMTTDSD 77
Query: 132 PS 133
           PS
Sbjct: 78  PS 79

>pdb|2DRK|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 59

Iteration: 1
 Score = 52.4 bits (124), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           V ALYDY+A   DEL+FK G+ IIV +K   +   WW  +LN K G+VP N +
Sbjct: 7   VKALYDYDAQTGDELTFKEGDTIIVHQK---DPAGWWEGELNGKRGWVPANYV 56

>pdb|2DRM|A Chain A, Acanthamoeba Myosin I Sh3 Domain Bound To Acan125 Length = 58

Iteration: 1
 Score = 52.4 bits (124), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           V ALYDY+A   DEL+FK G+ IIV +K   +   WW  +LN K G+VP N +
Sbjct: 6   VKALYDYDAQTGDELTFKEGDTIIVHQK---DPAGWWEGELNGKRGWVPANYV 55

>pdb|1UDL|A Chain A, The Solution Structure Of The Fifth Sh3 Domain Of Intersectin 2 (Kiaa1256) Length = 98

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 32/55 (58%), Gaps = 3/55 (5%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           V A+YDY ANN DELSF  G+ I V+ K D    +WW  ++N   G  P N + +
Sbjct: 37  VIAMYDYAANNEDELSFSKGQLINVMNKDDP---DWWQGEINGVTGLFPSNYVKM 88

>pdb|4GBQ|A Chain A, Solution Nmr Structure Of The Grb2 N-Terminal Sh3 Domain Complexed With A Ten-Residue Peptide Derived From Sos Direct Refinement Against Noes, J-Couplings, And 1h And 13c Chemical Shifts, 15 Structures Length = 74

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           A YD++A   DELSFK G+ + VL   +E ++ W+ ++LN K+G++P+N + + P
Sbjct: 14  AKYDFKATADDELSFKRGDILKVLN--EECDQNWYKAELNGKDGFIPKNYIEMKP 66

>pdb|1GRI|A Chain A, Grb2 Length = 217

Iteration: 1
 Score = 49.3 bits (116), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 22/55 (40%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           A YD++A   DELSFK G+ + VL   +E ++ W+ ++LN K+G++P+N + + P
Sbjct: 5   AKYDFKATADDELSFKRGDILKVL--NEECDQNWYKAELNGKDGFIPKNYIEMKP 57

>pdb|3JV3|A Chain A, Structure Of Sh3e-Dh Unit Of Murine Intersectin-1l Length = 283

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V  +YDY A N DEL+F  G+ I VL K D +   WW  +++ + G  P N + L   + 
Sbjct: 5   VIGMYDYTAQNDDELAFSKGQIINVLNKEDPD---WWKGEVSGQVGLFPSNYVKLTTDMD 61
Query: 132 PS 133
           PS
Sbjct: 62  PS 63

>pdb|1K76|A Chain A, Solution Structure Of The C-Terminal Sem-5 Sh3 Domain (Minimized Average Structure) Length = 62

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127
           V AL+D+    + EL+FK G+ I ++ K D N   WW  +LNN+ G  P N +  Y
Sbjct: 7   VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVAPY 59

>pdb|2PZ1|A Chain A, Crystal Structure Of Auto-Inhibited Asef Length = 466

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 66  ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ++++G+V    AL+D+   +  EL FK G+ I V+   D   REWWW ++ + EG+ P +
Sbjct: 24  LISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPAS 80
Query: 123 LLGL 126
            + L
Sbjct: 81  FVRL 84

>pdb|1WYX|A Chain A, The Crystal Structure Of The P130cas Sh3 Domain At 1.1 A Resolution Length = 69

Iteration: 1
 Score = 46.6 bits (109), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LLGLYPR 129
           ALYD  A + DELSF+ G+ + VL +  +    WW   L+ ++G VP N    L+G+Y +
Sbjct: 8   ALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGMYDK 67

>pdb|1AD5|A Chain A, Src Family Kinase Hck-Amp-Pnp Complex Length = 438

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
           V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY+P N + 
Sbjct: 5   VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYVA 56

>pdb|1QCF|A Chain A, Crystal Structure Of Hck In Complex With A Src Family- Selective Tyrosine Kinase Inhibitor Length = 454

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 26/63 (41%), Positives = 38/63 (60%), Gaps = 9/63 (14%)
Query: 65  GILNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYV 119
           G + +G    V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY+
Sbjct: 1   GAMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYI 56
Query: 120 PRN 122
           P N
Sbjct: 57  PSN 59

>pdb|1OEB|A Chain A, MonaGADS SH3C DOMAIN Length = 62

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALYD+EA   DEL F++GE + VL   D +   WW  +L+NK G  P N
Sbjct: 10  ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 55

>pdb|2OI3|A Chain A, Nmr Structure Analysis Of The Hematopoetic Cell Kinase Sh3 Domain Complexed With An Artificial High Affinity Ligand (Pd1) Length = 86

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 6/55 (10%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
           V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY+P N +
Sbjct: 28  VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYV 78

>pdb|2D0N|A Chain A, Crystal Structure Of The C-Terminal Sh3 Domain Of The Adaptor Protein Gads In Complex With Slp-76 Motif Peptide Reveals A Unique Sh3-Sh3 Interaction Length = 59

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALYD+EA   DEL F++GE + VL   D +   WW  +L+NK G  P N
Sbjct: 7   ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 52

>pdb|2DX1|A Chain A, Crystal Structure Of Rhogef Protein Asef Length = 482

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 6/64 (9%)
Query: 66  ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ++++G+V    AL+D+   +  EL FK G+ I V    D   REWWW ++ + EG+ P +
Sbjct: 61  LISDGSVVCAEALWDHVTXDDQELGFKAGDVIEVX---DATNREWWWGRVADGEGWFPAS 117
Query: 123 LLGL 126
            + L
Sbjct: 118 FVRL 121

>pdb|4HCK|A Chain A, Human Hck Sh3 Domain, Nmr, 25 Structures Length = 72

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/64 (42%), Positives = 38/64 (59%), Gaps = 10/64 (15%)
Query: 65  GILNNGA----VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGY 118
           GI   G+    V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY
Sbjct: 1   GIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGY 56
Query: 119 VPRN 122
           +P N
Sbjct: 57  IPSN 60

>pdb|1UTI|A Chain A, MonaGADS SH3C IN COMPLEX WITH HPK DERIVED PEPTIDE Length = 58

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALYD+EA   DEL F++GE + VL   D +   WW  +L+NK G  P N
Sbjct: 6   ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 51

>pdb|3NHN|A Chain A, Crystal Structure Of The Src-Family Kinase Hck Sh3-Sh2-Linker Regulatory Region Length = 193

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
Query: 65  GILNNGA----VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGY 118
           GI   G+    V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY
Sbjct: 1   GIREAGSEDIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGY 56
Query: 119 VPRNLL 124
           +P N +
Sbjct: 57  IPSNYV 62

>pdb|3SEM|A Chain A, Sem5 Sh3 Domain Complexed With Peptoid Inhibitor Length = 60

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127
           V AL+D+    + EL+FK G+ I ++ K D N   WW  +LNN+ G  P N +  Y
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVCPY 57

>pdb|1H3H|A Chain A, Structural Basis For Specific Recognition Of An Rxxk-Containing Slp-76 Peptide By The Gads C-Terminal Sh3 Domain Length = 60

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/49 (46%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALYD+EA   DEL F++GE + VL   D +   WW  +L+NK G  P N
Sbjct: 8   ALYDFEALEEDELGFRSGEVVEVL---DSSNPSWWTGRLHNKLGLFPAN 53

>pdb|2A08|A Chain A, Structure Of The Yeast Yhh6 Sh3 Domain Length = 60

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           ALY++      +L+FK G+ I +L+K D ++ +WW  + N KEG  P N +
Sbjct: 8   ALYNFAGEQPGDLAFKKGDVITILKKSD-SQNDWWTGRTNGKEGIFPANYV 57

>pdb|1BU1|A Chain A, Src Family Kinase Hck Sh3 Domain Length = 57

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 6/56 (10%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
           V ALYDYEA + ++LSF+ G+ ++VL    E   EWW ++     KEGY+P N + 
Sbjct: 3   VVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYVA 54

>pdb|1SEM|A Chain A, Structural Determinants Of Peptide-Binding Orientation And Of Sequence Specificity In Sh3 Domains Length = 58

Iteration: 1
 Score = 45.8 bits (107), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127
           V AL+D+    + EL+FK G+ I ++ K D N   WW  +LNN+ G  P N +  Y
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSNYVCPY 57

>pdb|1AZE|A Chain A, Nmr Structure Of The Complex Between The C32s-Y7v Mutant Of The Nsh3 Domain Of Grb2 With A Peptide From Sos, 10 Structures Length = 56

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 37/53 (69%), Gaps = 2/53 (3%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           A  D++A   DELSFK G+ + VL   +E+++ W+ ++LN K+G++P+N + +
Sbjct: 5   AKVDFKATADDELSFKRGDILKVLN--EESDQNWYKAELNGKDGFIPKNYIEM 55

>pdb|3NMZ|D Chain D, Crytal Structure Of Apc Complexed With Asef Length = 116

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/64 (34%), Positives = 38/64 (59%), Gaps = 6/64 (9%)
Query: 66  ILNNGAVY---ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ++++G+V    AL+D+   +  EL FK G+ I V+   D   REWWW ++ + EG+ P +
Sbjct: 30  LISDGSVVCAEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPAS 86
Query: 123 LLGL 126
            + L
Sbjct: 87  FVRL 90

>pdb|4ESR|A Chain A, Molecular And Structural Characterization Of The Sh3 Domain Of Ahi-1 In Regulation Of Cellular Resistance Of Bcr-Abl+ Chronic Myeloid Leukemia Cells To Tyrosine Kinase Inhibitors Length = 69

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 31/52 (59%), Gaps = 4/52 (7%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRN 122
           V ALYDY AN +DEL+   G+ I V  K +E   +WW+  +   +EGY P N
Sbjct: 9   VVALYDYTANRSDELTIHRGDIIRVFFKDNE---DWWYGSIGKGQEGYFPAN 57

>pdb|2DL7|A Chain A, Solution Structure Of The Second Sh3 Domain Of Human Kiaa0769 Protein Length = 73

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 30/53 (56%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           V ALYDYE    DELSF  G  I +L K ++++  +W  + N + G  P  L+
Sbjct: 11  VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLV 63

>pdb|2YT6|A Chain A, Solution Structure Of The Sh3_1 Domain Of Yamaguchi Sarcoma Viral (V-Yes) Oncogene Homolog 1 Length = 109

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
           ALYDYEA  T++LSFK GE   ++   +  E +WW ++     K GY+P N +
Sbjct: 32  ALYDYEARTTEDLSFKKGERFQII---NNTEGDWWEARSIATGKSGYIPSNYV 81

>pdb|1OOT|A Chain A, Crystal Structure Of The Sh3 Domain From A S. Cerevisiae Hypothetical 40.4 Kda Protein At 1.39 A Resolution Length = 60

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           ALY +    + +L F+ G+ I +L+K D ++ +WW  ++N +EG  P N + L
Sbjct: 8   ALYSFAGEESGDLPFRKGDVITILKKSD-SQNDWWTGRVNGREGIFPANYVEL 59

>pdb|2XMF|A Chain A, Myosin 1e Sh3 Length = 60

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 65  GILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           G L +    ALY Y+A +TDELSF   + I +++   E+   WW  +L  K+G  P N
Sbjct: 1   GPLGSPQCKALYAYDAQDTDELSFNANDIIDIIK---EDPSGWWTGRLRGKQGLFPNN 55

>pdb|1X2Q|A Chain A, Solution Structure Of The Sh3 Domain Of The Signal Transducing Adaptor Molecule 2 Length = 88

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRNLL 124
           V ALYD+EA   +EL+FK GE IIVL   D N    WW   N++  G  P N +
Sbjct: 20  VRALYDFEAVEDNELTFKHGEIIIVLDDSDAN----WWKGENHRGIGLFPSNFV 69

>pdb|2JTE|A Chain A, Third Sh3 Domain Of Cd2ap Length = 64

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Query: 75  LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNL 123
           L+ Y   N DEL+F+ GE I ++ K +  E  WW  +LN KEG  P N 
Sbjct: 12  LFPYTGTNEDELTFREGEIIHLISK-ETGEAGWWKGELNGKEGVFPDNF 59

>pdb|2YSQ|A Chain A, Solution Structure Of The Sh3 Domain From Rho Guanine Nucleotide Exchange Factor 9 Length = 81

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 18/54 (33%), Positives = 35/54 (64%), Gaps = 3/54 (5%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY 127
           A++D+      EL+FK G+ I VL   D + ++WWW +++++EG+ P + + L+
Sbjct: 15  AVWDHVTMANRELAFKAGDVIKVL---DASNKDWWWGQIDDEEGWFPASFVRLW 65

>pdb|2HDA|A Chain A, Yes Sh3 Domain Length = 64

Iteration: 1
 Score = 43.9 bits (102), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 32/53 (60%), Gaps = 5/53 (9%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
           ALYDYEA  T++LSFK GE   ++   +  E +WW ++     K GY+P N +
Sbjct: 10  ALYDYEARTTEDLSFKKGERFQII---NNTEGDWWEARSIATGKNGYIPSNYV 59

>pdb|3REB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain Length = 90

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 6/61 (9%)
Query: 67  LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
           + +  V ALYDY + + D+LSF+ G+ ++VL    E   EWW ++     KEGY+P N +
Sbjct: 1   MEDIIVVALYDYVSWSPDDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYV 56
Query: 125 G 125
Sbjct: 57  A 57

>pdb|2KGT|A Chain A, Solution Structure Of Sh3 Domain Of Ptk6 Length = 72

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 10/57 (17%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK------EGYVPRNLL 124
            L+D+++   +ELSF+ G+   V RK    E +WWW+ L ++      +GYVP N L
Sbjct: 15  GLWDFKSRTDEELSFRAGDVFHVARK----EEQWWWATLLDEAGGAVAQGYVPHNYL 67

>pdb|1UJ0|A Chain A, Crystal Structure Of Stam2 Sh3 Domain In Complex With A Ubpy-Derived Peptide Length = 62

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 23/53 (43%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           V ALYD+EA   +EL+FK GE I VL   D N   WW  + +   G  P N +
Sbjct: 8   VRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSNFV 57

>pdb|2L0A|A Chain A, Solution Nmr Structure Of Signal Transducing Adapter Molecule 1 Stam-1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4479e Length = 72

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           V A+YD+EA   +EL+FK GE I VL   D N   WW  + +   G  P N +
Sbjct: 20  VRAIYDFEAAEDNELTFKAGEIITVLDDSDPN---WWKGETHQGIGLFPSNFV 69

>pdb|2X3W|D Chain D, Structure Of Mouse Syndapin I (Crystal Form 2) Length = 60

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 9/57 (15%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           V ALYDY+    DELSFK G+ +  L  G+E+E+ W   +L++ +       LGLYP
Sbjct: 6   VRALYDYDGQEQDELSFKAGDELTKL--GEEDEQGWCRGRLDSGQ-------LGLYP 53

>pdb|3REA|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck-Sh3 Domain Length = 61

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 6/56 (10%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
           V ALYDY + + D+LSF+ G+ ++VL    E   EWW ++     KEGY+P N + 
Sbjct: 6   VVALYDYVSWSPDDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYVA 57

>pdb|2DIL|A Chain A, Solution Structure Of The Sh3 Domain Of The Human Proline- Serine-Threonine Phosphatase-Interacting Protein 1 Length = 69

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           ALYDY A N DEL    G+ + V+ +G++    WW  + N + G+VP + L
Sbjct: 13  ALYDYTAQNPDELDLSAGDILEVILEGEDG---WWTVERNGQRGFVPGSYL 60

>pdb|2YDL|A Chain A, Crystal Structure Of Sh3c From Cin85 Length = 69

Iteration: 1
 Score = 43.1 bits (100), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 1/58 (1%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
            ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N + L P ++
Sbjct: 7   VIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLPPLE 63

>pdb|1X2P|A Chain A, Solution Structure Of The Sh3 Domain Of The Protein Arginine N-Methyltransferase 2 Length = 68

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 125
           A+ DY A +  +LSF  GE I++LR   +   +WWW +     GY+P N +G
Sbjct: 12  AIADYAATDETQLSFLRGEKILILR---QTTADWWWGERAGCCGYIPANHVG 60

>pdb|2YUN|A Chain A, Solution Structure Of The Sh3 Domain Of Human Nostrin Length = 79

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 18/47 (38%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           ALY ++A   DEL+ + G+ +I+  K +E    WW+  LN K+G+ P
Sbjct: 12  ALYSFQARQDDELNLEKGDIVIIHEKKEEG---WWFGSLNGKKGHFP 55

>pdb|3HAJ|A Chain A, Crystal Structure Of Human Pacsin2 F-Bar Domain (P212121 Lattice) Length = 486

Iteration: 1
 Score = 42.7 bits (99), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 24/57 (42%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           V ALYDYE    DELSFK G+ +  +   DE+E+ W   +L+N +       +GLYP
Sbjct: 431 VRALYDYEGQEHDELSFKAGDELTKME--DEDEQGWCKGRLDNGQ-------VGLYP 478

>pdb|3M0P|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 4. Length = 62

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  + DE++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 9   VLALYDYQEKSPDEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54

>pdb|3M0S|A Chain A, Crystal Structure Of The R21d Mutant Of Alpha-Spectrin Sh3 Domain. Crystal Obtained In Ammonium Sulphate At Ph 7 Length = 57

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 33/49 (67%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  + DE++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 4   VLALYDYQEKSPDEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 49

>pdb|2K2M|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding Length = 68

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 12/70 (17%)
Query: 65  GILNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGY 118
           G L +GA   V   YD++A N+ ELS K  + + VL    ++ R+WW  K+ +   +EGY
Sbjct: 1   GPLGSGALKWVLCNYDFQARNSSELSVKQRDVLEVL----DDSRKWW--KVRDPAGQEGY 54
Query: 119 VPRNLLGLYP 128
           VP N+L  YP
Sbjct: 55  VPYNILTPYP 64

>pdb|2K6D|A Chain A, Cin85 Sh3-C Domain In Complex With Ubiquitin Length = 62

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
            ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N + L P
Sbjct: 8   VIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLP 61

>pdb|2K9G|A Chain A, Solution Structure Of The Third Sh3 Domain Of The Cin85 Adapter Protein Length = 73

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
            ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N + L P
Sbjct: 14  VIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKLLP 67

>pdb|2D8H|A Chain A, Solution Structure Of The Sh3 Domain Of Hypothetical Protein Sh3yl1 Length = 80

Iteration: 1
 Score = 42.0 bits (97), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 59  SVQEKLGILNNG-AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG 117
           S  E++G LN    V ALY +E     +L+F+ G+ I V+ K D +  +WW  KL  + G
Sbjct: 6   SGHERVGNLNQPIEVTALYSFEGQQPGDLNFQAGDRITVISKTD-SHFDWWEGKLRGQTG 64
Query: 118 YVPRNLL 124
             P N +
Sbjct: 65  IFPANYV 71

>pdb|1A0N|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3- Kinase, Family Of 25 Structures Length = 69

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 131
           ALYDYEA   D+LSF  GE   +L     +E +WW ++     + GY+P N +     +Q
Sbjct: 10  ALYDYEARTEDDLSFHKGEKFQILNS---SEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 66

>pdb|1G83|A Chain A, Crystal Structure Of Fyn Sh3-Sh2 Length = 165

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 131
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N +     +Q
Sbjct: 8   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 64

>pdb|1AZG|B Chain B, Nmr Study Of The Sh3 Domain From Fyn Proto-Oncogene Tyrosine Kinase Kinase Complexed With The Synthetic Peptide P2l Corresponding To Residues 91-104 Of The P85 Subunit Of Pi3-Kinase, Minimized Average (Probmap) Structure Length = 67

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 131
           ALYDYEA   D+LSF  GE   +L     +E +WW ++     + GY+P N +     +Q
Sbjct: 8   ALYDYEARTEDDLSFHKGEKFQILNS---SEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 64

>pdb|2DBM|A Chain A, Solution Structures Of The Sh3 Domain Of Human Sh3- Containing Grb2-Like Protein 2 Length = 73

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 6/64 (9%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN---LLGLYPRV 130
           ALYD+E  N  EL FK G+ I +  + DEN   W+   L+   G+ P N   +L   P  
Sbjct: 12  ALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGHSGFFPINYVEILVALPHS 68
Query: 131 QPSA 134
            PS+
Sbjct: 69  GPSS 72

>pdb|3UF4|A Chain A, Crystal Structure Of A Sh3 And Sh2 Domains Of Fyn Protein (Proto- Concogene Tyrosine-Protein Kinase Fyn) From Mus Musculus At 1.98 A Resolution Length = 164

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 131
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N +     +Q
Sbjct: 9   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVAPVDSIQ 65

>pdb|3IQL|A Chain A, Crystal Structure Of The Rat Endophilin-A1 Sh3 Domain Length = 71

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALYD+E  N  EL FK G+ I +  + DEN   W+   L+ + G+ P N
Sbjct: 16  ALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGQSGFFPIN 61

>pdb|1UHC|A Chain A, Solution Structure Of Rsgi Ruh-002, A Sh3 Domain Of Kiaa1010 Protein [homo Sapiens] Length = 79

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 69  NGAVYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLL 124
           N   +A+Y ++A N +ELS    + + +L   D     EWW +++N K+GYVP N +
Sbjct: 13  NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYI 69

>pdb|2VVK|A Chain A, Grb2 Sh3c (1) Length = 56

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           G+V AL+D++     EL F+ G+ I V+   D N   WW    + + G  PRN +
Sbjct: 1   GSVQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRNYV 52

>pdb|3UA6|A Chain A, Crystal Structure Of The Human Fyn Sh3 Domain Length = 64

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N +
Sbjct: 10  ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYV 59

>pdb|2A37|A Chain A, Solution Structure Of The T22g Mutant Of N-Terminal Sh3 Domain Of Drk (Drkn Sh3 Domain) Length = 59

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
           A +D+ A   DELSF+ G+ + +L    E++  W+ ++L+ KEG +P N + +
Sbjct: 5   AKHDFSATADDELSFRKGQILKILNM--EDDSNWYRAELDGKEGLIPSNYIEM 55

>pdb|1HD3|A Chain A, A-Spectrin Sh3 Domain F52y Mutant Length = 62

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/49 (34%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++GYVP
Sbjct: 9   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGYVP 54

>pdb|1FYN|A Chain A, Phosphotransferase Length = 62

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N +
Sbjct: 9   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYV 58

>pdb|2BZ8|A Chain A, N-Terminal Sh3 Domain Of Cin85 Bound To Cbl-B Peptide Length = 58

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Query: 76  YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           +DY+A + DEL+   GE I  +RK D     WW  ++N + G  P N +
Sbjct: 8   FDYQAQHDDELTISVGEIITNIRKEDGG---WWEGQINGRRGLFPDNFV 53

>pdb|3C0C|A Chain A, X-Ray Crystal Structure Of The Rat Endophilin A2 Sh3 Domain Length = 73

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
Query: 62  EKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           E +  L+  +  ALYD+E  N  EL F+ G+ I +  + DEN   W+   L+ + G+ P
Sbjct: 6   EFMPPLDQPSCKALYDFEPENDGELGFREGDLITLTNQIDEN---WYEGXLHGQSGFFP 61

>pdb|1M27|C Chain C, Crystal Structure Of SapFYNSH3SLAM TERNARY COMPLEX Length = 61

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N + 
Sbjct: 6   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVA 56

>pdb|2ROL|A Chain A, Structural Basis Of Pxxdy Motif Recognition In Sh3 Binding Length = 64

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 9/56 (16%)
Query: 76  YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLYP 128
           YD++A N+ ELS K  + + VL    ++ R+WW  K+ +   +EGYVP N+L  YP
Sbjct: 14  YDFQARNSSELSVKQRDVLEVL----DDSRKWW--KVRDPAGQEGYVPYNILTPYP 63

>pdb|1AVZ|C Chain C, V-1 Nef Protein In Complex With Wild Type Fyn Sh3 Domain Length = 57

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N + 
Sbjct: 5   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVA 55

>pdb|3THK|A Chain A, Structure Of Sh3 Chimera With A Type Ii Ligand Linked To The Chain C- Terminal Length = 73

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 8   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 53

>pdb|1SHF|A Chain A, Crystal Structure Of The Sh3 Domain In Human Fyn; Comparison Of The Three-Dimensional Structures Of Sh3 Domains In Tyrosine Kinases And Spectrin Length = 59

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 31/54 (57%), Gaps = 5/54 (9%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N + 
Sbjct: 6   ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYVA 56

>pdb|3H0H|A Chain A, Human Fyn Sh3 Domain R96i Mutant, Crystal Form I Length = 73

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 5/51 (9%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRN 122
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N
Sbjct: 20  ALYDYEAITEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSN 67

>pdb|1UUE|A Chain A, A-Spectrin Sh3 Domain (V44t, D48g Mutant) Length = 62

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW +++N ++G+VP
Sbjct: 9   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKTEVNGRQGFVP 54

>pdb|2DA9|A Chain A, Solution Structure Of The Third Sh3 Domain Of Sh3-Domain Kinase Binding Protein 1 (Regulator Of Ubiquitous Kinase, Ruk) Length = 70

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL 126
            ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N + L
Sbjct: 12  VIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDNFVKL 63

>pdb|2KRN|A Chain A, High Resolution Structure Of The Second Sh3 Domain Of Cd2ap Length = 60

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
            L+DY   N DEL    G+ I V+   +E E  WW   LNNK G  P N +
Sbjct: 9   VLFDYSPQNEDELELIVGDVIDVI---EEVEEGWWSGTLNNKLGLFPSNFV 56

>pdb|2ED1|A Chain A, Solution Structure Of The Sh3 Domain Of 130 Kda Phosphatidylinositol 4,5-Biphosphate-Dependent Arf1 Gtpase- Activating Protein Length = 76

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 6/66 (9%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLYP 128
           V  +YD +A+N DEL+F  GE IIV     E ++EWW   +     ++G  P + + +  
Sbjct: 13  VKTIYDCQADNDDELTFIEGEVIIVT---GEEDQEWWIGHIEGQPERKGVFPVSFVHILS 69
Query: 129 RVQPSA 134
              PS+
Sbjct: 70  DSGPSS 75

>pdb|2ED0|A Chain A, Solution Structure Of The Sh3 Domain Of Abl Interactor 2 (Abelson Interactor 2) Length = 78

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           V A+YDY  +  DELSF+ G  I V++K D+    W+   +N   G  P N +
Sbjct: 20  VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDG---WYEGVMNGVTGLFPGNYV 69

>pdb|1PWT|A Chain A, Thermodynamic Analysis Of Alpha-Spectrin Sh3 And Two Of Its Circular Permutants With Different Loop Lengths: Discerning The Reasons For Rapid Folding In Proteins Length = 61

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 8   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 53

>pdb|1NEG|A Chain A, Crystal Structure Analysis Of N-And C-Terminal Labeled Sh3- Domain Of Alpha-Chicken Spectrin Length = 83

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 20  VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 65

>pdb|2F2X|A Chain A, Alpha-Spectrin Sh3 Domain R21g Mutant Length = 62

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 9   VLALYDYQEKSPGEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54

>pdb|3I9Q|A Chain A, Crystal Structure Of The Triple Mutant S19g-P20d-R21s Of Alpha Spectrin Sh3 Domain Length = 57

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+     E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 4   VLALYDYQEKGDSEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 49

>pdb|2LJ3|A Chain A, Pfbd: High-Throughput Strategy Of Backbone Fold Determination For Small Well-Folded Proteins In Less Than A Day Length = 63

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 9   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54

>pdb|1M8M|A Chain A, Solid-State Mas Nmr Structure Of The A-Spectrin Sh3 Domain Length = 62

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 9   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54

>pdb|2CDT|A Chain A, Alpha-Spectrin Sh3 Domain A56s Mutant Length = 62

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 9   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54

>pdb|2F2V|A Chain A, Alpha-Spectrin Sh3 Domain A56g Mutant Length = 62

Iteration: 1
 Score = 39.7 bits (91), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 9   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54

>pdb|2F2W|A Chain A, Alpha-Spectrin Sh3 Domain R21a Mutant Length = 62

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N+++G+VP
Sbjct: 9   VLALYDYQEKSPAEVTMKKGDILTLL---NSTNKDWWKVEVNDRQGFVP 54

>pdb|1EFN|A Chain A, Hiv-1 Nef Protein In Complex With R96i Mutant Fyn Sh3 Domain Length = 59

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/54 (38%), Positives = 30/54 (55%), Gaps = 5/54 (9%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
           ALYDYEA   D+LSF  GE   +L     +E +WW ++     + GY+P N + 
Sbjct: 5   ALYDYEAITEDDLSFHKGEKFQILNS---SEGDWWEARSLTTGETGYIPSNYVA 55

>pdb|2H8H|A Chain A, Src Kinase In Complex With A Quinazoline Inhibitor Length = 535

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 7/74 (9%)
Query: 62  EKLGILNNGAV--YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEG 117
           ++ G L  G     ALYDYE+    +LSFK GE + ++   +  E +WW   S    + G
Sbjct: 76  QRAGPLAGGVTTFVALYDYESRTETDLSFKKGERLQIV---NNTEGDWWLAHSLSTGQTG 132
Query: 118 YVPRNLLGLYPRVQ 131
           Y+P N +     +Q
Sbjct: 133 YIPSNYVAPSDSIQ 146

>pdb|3H0F|A Chain A, Crystal Structure Of The Human Fyn Sh3 R96w Mutant Length = 73

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLL 124
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P N +
Sbjct: 20  ALYDYEAWTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSNYV 69

>pdb|1WXB|A Chain A, Solution Structure Of The Sh3 Domain From Human Epidermal Growth Factor Receptor Pathway Substrate 8-Like Protein Length = 68

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 25/57 (43%), Positives = 33/57 (57%), Gaps = 9/57 (15%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE---GYVPRNLLG 125
           V  LYD+ A N +ELS    E + VL    E+ R+WW  KL ++    GYVP N+LG
Sbjct: 10  VKILYDFTARNANELSVLKDEVLEVL----EDGRQWW--KLRSRSGQAGYVPCNILG 60

>pdb|1BK2|A Chain A, A-Spectrin Sh3 Domain D48g Mutant Length = 57

Iteration: 1
 Score = 39.3 bits (90), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/49 (32%), Positives = 31/49 (63%), Gaps = 3/49 (6%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVP 120
           V ALYDY+  +  E++ K G+ + +L   +   ++WW  ++N ++G+VP
Sbjct: 4   VLALYDYQEKSPREVTMKKGDILTLL---NSTNKDWWKVEVNGRQGFVP 49

>pdb|3RBB|B Chain B, Hiv-1 Nef Protein In Complex With Engineered Hck Sh3 Domain Length = 61

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 33/56 (58%), Gaps = 6/56 (10%)
Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLG 125
           V ALYDY +  + +LSF+ G+ ++VL    E   EWW ++     KEGY+P N + 
Sbjct: 6   VVALYDYYSPFSWDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYIPSNYVA 57

>pdb|3CQT|A Chain A, N53i V55l Mutant Of Fyn Sh3 Domain Length = 79

Iteration: 1
 Score = 38.9 bits (89), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ 131
           ALYDYEA   D+LSF  GE   +L   + +E +WW ++     + GY+P   L    R+ 
Sbjct: 10  ALYDYEARTEDDLSFHKGEKFQIL---NSSEGDWWEARSLTTGETGYIPSIYLAPVDRLD 66

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-36
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	6e-28
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	2e-23
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	4e-23
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	1e-19
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	8e-19
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	9e-19
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	1e-18
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	2e-18
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	2e-18
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	2e-18
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	4e-18
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	4e-18
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	6e-18
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	8e-18
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	9e-18
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	1e-17
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	1e-17
1wxb_A	68	Epidermal growth factor receptor pathway substrate	1e-17
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	1e-17
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	1e-17
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	2e-17
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	2e-17
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	2e-17
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	3e-17
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	4e-17
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	4e-17
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	5e-17
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	5e-17
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	5e-17
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	6e-17
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	6e-17
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	7e-17
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	8e-17
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	9e-17
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	9e-17
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	1e-16
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	1e-16
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	1e-16
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	1e-16
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	1e-16
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	1e-16
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	1e-16
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	2e-16
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	2e-16
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	2e-16
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	2e-16
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	2e-16
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	2e-16
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	2e-16
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	3e-16
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	3e-16
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	3e-16
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	3e-16
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	3e-16
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	3e-16
1awj_A	77	ITK; transferase, regulatory intramolecular comple	4e-16
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	4e-16
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	4e-16
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	4e-16
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	5e-16
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	6e-16
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	6e-16
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	6e-16
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	7e-16
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	8e-16
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	9e-16
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	1e-15
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	1e-15
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	1e-15
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	1e-15
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	1e-15
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	1e-15
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	1e-15
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	1e-15
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	1e-15
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	1e-15
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	2e-15
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	2e-15
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	2e-15
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	2e-15
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	2e-15
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	2e-15
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	3e-15
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	3e-15
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	3e-15
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	3e-15
1i07_A	60	Epidermal growth factor receptor kinase substrate	3e-15
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	3e-15
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens} Length	3e-15
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	3e-15
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	3e-15
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	3e-15
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	4e-15
3u23_A	65	CD2-associated protein; structural genomics, struc	4e-15
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	5e-15
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	5e-15
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	5e-15
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	9e-15
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	5e-15
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	6e-15
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	6e-15
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	6e-15
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	7e-15
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	7e-15
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	7e-15
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	8e-15
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	8e-15
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	8e-15
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	8e-15
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	8e-15
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	9e-15
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	1e-14
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	1e-14
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	1e-14
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	1e-14
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	1e-14
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	1e-14
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	2e-14
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	2e-14
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	2e-14
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	2e-14
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	3e-14
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	4e-14
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	7e-14
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	7e-14
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	8e-14
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	9e-14
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	1e-13
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	1e-13
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	7e-12
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	2e-13
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	2e-13
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	2e-13
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	2e-13
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	2e-13
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	4e-13
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	4e-13
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	5e-13
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	6e-13
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	8e-13
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	9e-13
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	1e-12
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	1e-12
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	1e-12
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	2e-12
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	2e-12
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	2e-12
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	2e-12
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-12
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	2e-12
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	3e-12
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	3e-12
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	4e-12
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	4e-12
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	4e-12
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	5e-12
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	5e-12
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	8e-08
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	5e-12
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	5e-12
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	1e-11
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	2e-11
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	2e-11
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	2e-11
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	3e-11
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	4e-11
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	4e-11
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	7e-11
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	1e-10
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	2e-10
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-10
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	2e-07
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	2e-10
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	3e-10
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	3e-10
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	3e-10
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	3e-10
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	4e-10
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	6e-10
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	9e-10
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	8e-08
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	1e-09
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	1e-09
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	2e-09
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	4e-09
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	7e-09
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	2e-08
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	4e-08
1u3o_A	82	Huntingtin-associated protein-interacting protein;	5e-08
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	3e-07
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	6e-07
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	2e-06
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	4e-05
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	4e-05
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	7e-05
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	9e-05

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  123 bits (312), Expect = 2e-36
 Identities = 66/110 (60%), Positives = 86/110 (78%)

Query: 27  CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
            +FA T+SD +TAA KCEE EEG+  CS+FLY VQEK+GI+N G +YAL+DYE  N DEL
Sbjct: 128 AVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDEL 187

Query: 87  SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATP 136
             K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLGLYPR++P    
Sbjct: 188 PMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPRQRS 237

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  101 bits (254), Expect = 6e-28
 Identities = 55/106 (51%), Positives = 75/106 (70%)

Query: 27  CIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDEL 86
            IFATT SD  TA  KC+   EG+  C+ +L  V++ +G++N+GAVYAL+DY A   DEL
Sbjct: 112 AIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDEL 171

Query: 87  SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP 132
           SF+ GE + VLR+    E +WWW+ L+ +EGYVPRN  GL+PRV+P
Sbjct: 172 SFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKP 217

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens} Length = 69

 Score = 85.8 bits (213), Expect = 2e-23
 Identities = 24/65 (36%), Positives = 36/65 (55%), Gaps = 4/65 (6%)

Query: 69  NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LL 124
           N    ALYD  A + DELSF+ G+ + VL +  +    WW   L+ ++G VP N    L+
Sbjct: 3   NVLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILV 62

Query: 125 GLYPR 129
           G+Y +
Sbjct: 63  GMYDK 67

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 79

 Score = 85.1 bits (211), Expect = 4e-23
 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
            +A+Y ++A N +ELS    + + +L   D     EWW +++N K+GYVP N +      
Sbjct: 16  YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG 75

Query: 131 QPS 133
             S
Sbjct: 76  PSS 78

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 72

 Score = 75.9 bits (187), Expect = 1e-19
 Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 11/68 (16%)

Query: 65  GILNNGAVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN------KEG 117
              + G  Y  L+D+++   +ELSF+ G+   V RK +    +WWW+ L +       +G
Sbjct: 5   DQAHLGPKYVGLWDFKSRTDEELSFRAGDVFHVARKEE----QWWWATLLDEAGGAVAQG 60

Query: 118 YVPRNLLG 125
           YVP N L 
Sbjct: 61  YVPHNYLA 68

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A Length = 68

 Score = 73.9 bits (182), Expect = 8e-19
 Identities = 23/61 (37%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLYPRV 130
           V   YD++A N+ ELS K  + + VL    ++ R+WW  +    +EGYVP N+L  YP  
Sbjct: 11  VLCNYDFQARNSSELSVKQRDVLEVL----DDSRKWWKVRDPAGQEGYVPYNILTPYPAA 66

Query: 131 Q 131
            
Sbjct: 67  A 67

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A Length = 71

 Score = 73.9 bits (182), Expect = 9e-19
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
           V  LY + +   +EL+F+ GE + V+ K + +  EWW  K    + G VP+N + +    
Sbjct: 9   VQTLYPFSSVTEEELNFEKGETMEVIEKPENDP-EWWKCKNARGQVGLVPKNYVVVLSDG 67

Query: 131 QPS 133
              
Sbjct: 68  PAL 70

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 73.1 bits (180), Expect = 1e-18
 Identities = 21/65 (32%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
             A+ DY A +  +LSF  GE I++LR+   +   WWW +     GY+P N    +  V 
Sbjct: 10  FVAIADYAATDETQLSFLRGEKILILRQTTAD---WWWGERAGCCGYIPAN----H--VG 60

Query: 132 PSATP 136
             + P
Sbjct: 61  KHSGP 65

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens} Length = 90

 Score = 73.6 bits (181), Expect = 2e-18
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 6/58 (10%)

Query: 67  LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           + +  V ALYDY + + D+LSF+ G+ ++VL +      EWW   S    KEGY+P N
Sbjct: 1   MEDIIVVALYDYVSWSPDDLSFQKGDQMVVLEE----SGEWWKARSLATRKEGYIPSN 54

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum} Length = 80

 Score = 72.8 bits (179), Expect = 2e-18
 Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
             AL DY  ++T  L FK  + I +  K  EN  +W+  +LN KEG  P + + +     
Sbjct: 13  ARALKDYNVSDTSLLPFKRNDIITITFKDQEN--KWFMGQLNGKEGSFPVDHVEILLSDV 70

Query: 132 PSATPQ 137
           P   P 
Sbjct: 71  PPPQPV 76

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 80

 Score = 72.9 bits (179), Expect = 2e-18
 Identities = 17/66 (25%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
                 Y+     E+SF  G  + VL K +     WW+ +    EG+ P + L L    Q
Sbjct: 11  YMTCSAYQKVQDSEISFPAGVEVQVLEKQES---GWWYVRFGELEGWAPSHYLVLDENEQ 67

Query: 132 PSATPQ 137
           P  + +
Sbjct: 68  PDPSGK 73

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Length = 91

 Score = 72.9 bits (179), Expect = 4e-18
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
           V  LY + +   +EL+F+ GE + V+ K + +  EWW  K    + G VP+N + +    
Sbjct: 20  VQTLYPFSSVTEEELNFEKGETMEVIEKPENDP-EWWKCKNARGQVGLVPKNYVVVLSDG 78

Query: 131 QPSATPQ 137
                  
Sbjct: 79  PALHPAH 85

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A Length = 63

 Score = 71.8 bits (177), Expect = 4e-18
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALYD+ A+  + LS   GE + VL     +  EW  ++  N +G+VP  
Sbjct: 8   FVALYDFVASGDNTLSITKGEKLRVLGY--NHNGEWCEAQTKNGQGWVPSA 56

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 72.0 bits (177), Expect = 6e-18
 Identities = 18/70 (25%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN----LLGLY 127
             A++D+      EL+FK G+ I VL   +++   WWW +++++EG+ P +     +   
Sbjct: 13  AEAVWDHVTMANRELAFKAGDVIKVLDASNKD---WWWGQIDDEEGWFPASFVRLWVNQE 69

Query: 128 PRVQPSATPQ 137
             V+  + P 
Sbjct: 70  DEVEEGSGPS 79

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 78

 Score = 71.2 bits (175), Expect = 9e-18
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLLGLYPR 129
              +Y Y+A+  DEL+ +  E + V+  GD    E W        + GYVP   L     
Sbjct: 16  CKVVYSYKASQPDELTIEEHEVLEVIEDGDM---EDWVKARNKVGQVGYVPEKYLQFPTS 72

Query: 130 VQPSA 134
             PS+
Sbjct: 73  SGPSS 77

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} PDB: 3h0i_A 3h0f_A* Length = 73

 Score = 71.2 bits (175), Expect = 1e-17
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
             ALYDYEA   D+LSF  GE   +L   + +   WW   S    + GY+P N
Sbjct: 18  FVALYDYEAITEDDLSFHKGEKFQILNSSEGD---WWEARSLTTGETGYIPSN 67

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} Length = 73

 Score = 71.2 bits (175), Expect = 1e-17
 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALYDY+  +  E++ K G+ + +L   +++   WW  ++N+++G+VP  
Sbjct: 8   VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 55

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 70.7 bits (174), Expect = 1e-17
 Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 7/64 (10%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
           V  LYD+ A N +ELS    E + VL  G     +WW  +  + + GYVP N+LG     
Sbjct: 10  VKILYDFTARNANELSVLKDEVLEVLEDGR----QWWKLRSRSGQAGYVPCNILGEAS-- 63

Query: 131 QPSA 134
            PS+
Sbjct: 64  GPSS 67

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 71.2 bits (175), Expect = 1e-17
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
             A +DY      ELSFK G  +++ ++  ++   WW  + N  +G +P   + +     
Sbjct: 12  AIAKFDYVGRTARELSFKKGASLLLYQRASDD---WWEGRHNGIDGLIPHQYIVVQDTSG 68

Query: 132 PSA 134
           PS+
Sbjct: 69  PSS 71

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1 Length = 83

 Score = 70.9 bits (174), Expect = 1e-17
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V ALYDY+  +  E++ K G+ + +L   +++   WW  ++N+++G+VP   +       
Sbjct: 20  VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAAYVKKLAAAW 76

Query: 132 PS 133
             
Sbjct: 77  SH 78

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 70.4 bits (173), Expect = 2e-17
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
              + +Y+     ELS + GE + V+ K +     WW+   + ++G+VP   L       
Sbjct: 11  YVVVSNYKKQENSELSLQAGEVVDVIEKNESG---WWFVSTSEEQGWVPATYLEAQNSGP 67

Query: 132 PSA 134
            S 
Sbjct: 68  SSG 70

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 68

 Score = 70.3 bits (173), Expect = 2e-17
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
            L+ +     +EL    G  + VL+KG++N   W     N ++G VP N
Sbjct: 12  VLFGFVPETKEELQVMPGNIVFVLKKGNDN---WATVMFNGQKGLVPCN 57

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae} Length = 54

 Score = 69.5 bits (171), Expect = 2e-17
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           GA+ A+Y YEA   DE+S   G+ I V+R  D +   W + + +  +G  P +
Sbjct: 1   GAMEAIYAYEAQGDDEISIDPGDIITVIRGDDGS--GWTYGECDGLKGLFPTS 51

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens} Length = 68

 Score = 70.0 bits (172), Expect = 3e-17
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP 128
           +  LY++EA N  EL+   GE + VL         WW  K    + GY+P N+L    
Sbjct: 10  MQVLYEFEARNPRELTVVQGEKLEVLDHSK----RWWLVKNEAGRSGYIPSNILEPLS 63

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 69.6 bits (171), Expect = 4e-17
 Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 6/65 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
             ALYD   + +DEL+F  G+ + +L +       WW   L+ ++G  P N      R+Q
Sbjct: 10  ARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPAN------RLQ 63

Query: 132 PSATP 136
             + P
Sbjct: 64  ILSGP 68

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 85

 Score = 69.8 bits (171), Expect = 4e-17
 Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 7/65 (10%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V AL  Y  +N   LSF  G+ I +L      E  W +     + G  P +       VQ
Sbjct: 11  VIALRSYITDNCSLLSFHRGDLIKLLPV-ATLEPGWQFGSAGGRSGLFPAD----I--VQ 63

Query: 132 PSATP 136
           P+A P
Sbjct: 64  PAAAP 68

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 73

 Score = 69.3 bits (170), Expect = 5e-17
 Identities = 20/51 (39%), Positives = 28/51 (54%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALYDYE    DELSF  G  I +L K ++++  +W  + N + G  P  
Sbjct: 11  VKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSV 61

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 69

 Score = 69.2 bits (170), Expect = 5e-17
 Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALY Y +    +L+F  GE I+V +K    + EWW   + ++ G  P N
Sbjct: 11  YIALYPYSSVEPGDLTFTEGEEILVTQK----DGEWWTGSIGDRSGIFPSN 57

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ... Length = 62

 Score = 69.2 bits (170), Expect = 5e-17
 Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V  LYDY+  +  EL+ K G+ + +L   +++   WW  ++N ++G+VP  
Sbjct: 9   VLVLYDYQEKSPRELTVKKGDILTLLNSTNKD---WWKIEVNGRQGFVPAA 56

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 71

 Score = 69.3 bits (170), Expect = 6e-17
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 3/63 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
              +  Y + + DE+ F+ G  + V+RK  E    WW+ +   KEG+ P + L       
Sbjct: 11  YVTVQPYTSQSKDEIGFEKGVTVEVIRKNLEG---WWYIRYLGKEGWAPASYLKKAKDSG 67

Query: 132 PSA 134
           PS+
Sbjct: 68  PSS 70

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens} Length = 72

 Score = 69.3 bits (170), Expect = 6e-17
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
           V A +DY A    EL  K  E + +L    ++ + WW  +   NK G+VP N +      
Sbjct: 10  VVAKFDYVAQQEQELDIKKNERLWLL----DDSKSWWRVRNSMNKTGFVPSNYVERKNSA 65

Query: 131 QPSA 134
           + +A
Sbjct: 66  RAAA 69

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 68.8 bits (169), Expect = 7e-17
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALY +E    DEL F+ G+ I +    D N   WW      + G +P N
Sbjct: 10  FRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSN 57

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 69.4 bits (170), Expect = 8e-17
 Identities = 25/66 (37%), Positives = 33/66 (50%), Gaps = 3/66 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V ALYD+EA   +EL+FK GE IIVL   D N   WW  + +   G  P N +     ++
Sbjct: 20  VRALYDFEAVEDNELTFKHGEIIIVLDDSDAN---WWKGENHRGIGLFPSNFVTTNLNIE 76

Query: 132 PSATPQ 137
             A   
Sbjct: 77  TEAAAV 82

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus} Length = 93

 Score = 69.4 bits (170), Expect = 9e-17
 Identities = 15/68 (22%), Positives = 33/68 (48%), Gaps = 2/68 (2%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNK-EGYVPRNLLGLYPR 129
             A YD+ A + +E+SF+ G+ + +  K  + +   W    L+ +  G +P N + +  +
Sbjct: 20  ARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGK 79

Query: 130 VQPSATPQ 137
            +   T +
Sbjct: 80  RRGRKTIE 87

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A Length = 60

 Score = 68.3 bits (168), Expect = 9e-17
 Identities = 14/57 (24%), Positives = 29/57 (50%), Gaps = 3/57 (5%)

Query: 66  ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ++ +    AL+D+  N+  EL+FK G+ I +L + +++   W    +    G  P +
Sbjct: 1   LIKHMRAEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLS 54

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 68.6 bits (168), Expect = 1e-16
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 18/75 (24%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---------NNKEGYVPRN 122
             AL+DY+A   ++LSF+ G+ + VL    E    WW ++             +GY+P N
Sbjct: 10  FVALFDYQARTAEDLSFRAGDKLQVLDTSHEG---WWLARHLEKKGTGLGQQLQGYIPSN 66

Query: 123 LLGLYPRVQPSATPQ 137
               Y  V   + P 
Sbjct: 67  ----Y--VAEDSGPS 75

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A Length = 86

 Score = 68.6 bits (168), Expect = 1e-16
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           V ALYDYEA + ++LSF+ G+ ++VL +      EWW   S    KEGY+P N
Sbjct: 28  VVALYDYEAIHHEDLSFQKGDQMVVLEESG----EWWKARSLATRKEGYIPSN 76

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 68.5 bits (168), Expect = 1e-16
 Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             A + Y      ELSF+ G+ + +  +   +   WW  + N   G +P  
Sbjct: 13  AVACFAYTGRTAQELSFRRGDVLRLHERASSD---WWRGEHNGMRGLIPHK 60

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 68.0 bits (167), Expect = 1e-16
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALY +     ++L  + G+ I +L   +E+   WW  K+ ++ G+ P N
Sbjct: 10  YVALYKFVPQENEDLEMRPGDIITLLEDSNED---WWKGKIQDRIGFFPAN 57

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A Length = 58

 Score = 67.6 bits (166), Expect = 1e-16
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALYD+EA   DEL F++GE + VL   + +   WW  +L+NK G  P N
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPS---WWTGRLHNKLGLFPAN 51

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A Length = 73

 Score = 68.1 bits (167), Expect = 1e-16
 Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 6/66 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN---LLGLYP 128
             ALYD+E  N  EL FK G+ I +  + DEN   W+   L+   G+ P N   +L   P
Sbjct: 10  CRALYDFEPENEGELGFKEGDIITLTNQIDEN---WYEGMLHGHSGFFPINYVEILVALP 66

Query: 129 RVQPSA 134
              PS+
Sbjct: 67  HSGPSS 72

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus} Length = 60

 Score = 67.6 bits (166), Expect = 2e-16
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             A +DY   +  ELSFK G  +++  +  E+   WW  + N  +G VP  
Sbjct: 9   AIAKFDYVGRSARELSFKKGASLLLYHRASED---WWEGRHNGIDGLVPHQ 56

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1 Length = 71

 Score = 68.1 bits (167), Expect = 2e-16
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 122
             A Y++      +L F  G+ + ++    +    W+ +K    +EG +P N
Sbjct: 14  CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDP--NWYKAKNKVGREGIIPAN 63

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 98

 Score = 68.6 bits (168), Expect = 2e-16
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A+YDY ANN DELSF  G+ I V+ K D +   WW  ++N   G  P N
Sbjct: 37  VIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSN 84

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic} Length = 73

 Score = 67.8 bits (166), Expect = 2e-16
 Identities = 13/49 (26%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
            L  Y A    E++ K G+ + +L   +++   WW  ++N+++G+VP  
Sbjct: 5   PLPPYSAGG-REVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 49

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens} Length = 69

 Score = 67.7 bits (166), Expect = 2e-16
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALYDY A N DEL    G+ + V+ +G++    WW  + N + G+VP +
Sbjct: 11  YRALYDYTAQNPDELDLSAGDILEVILEGEDG---WWTVERNGQRGFVPGS 58

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A Length = 58

 Score = 67.2 bits (165), Expect = 2e-16
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V AL+D+    + EL+FK G+ I ++ K D N   WW  +LNN+ G  P N
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSN 52

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus} Length = 70

 Score = 67.6 bits (166), Expect = 2e-16
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
             AL+ Y A+  +EL  + GE I VL K  +    W    S L  + G  P +
Sbjct: 10  FVALHTYSAHRPEELDLQKGEGIRVLGKYQDG---WLKGLSLLTGRTGIFPSD 59

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1 Length = 65

 Score = 67.3 bits (165), Expect = 3e-16
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           V AL+D+  N+ ++L FK G+ + +  K +E     WW       K G +P  
Sbjct: 6   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ----WWNAEDSEGKRGMIPVP 54

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 67.8 bits (166), Expect = 3e-16
 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 7/65 (10%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V ALY +E     +L+F+ G+ I V+ K D    +WW  KL  + G  P N    Y  V 
Sbjct: 20  VTALYSFEGQQPGDLNFQAGDRITVISKTDS-HFDWWEGKLRGQTGIFPAN----Y--VT 72

Query: 132 PSATP 136
            ++ P
Sbjct: 73  MNSGP 77

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A Length = 58

 Score = 66.8 bits (164), Expect = 3e-16
 Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 9/61 (14%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V ALY ++     +L  K G+ + +L K       W+    N + G  P N    Y  V+
Sbjct: 5   VEALYQFDPQQDGDLGLKPGDKVQLLEKLSPE---WYKGSCNGRTGIFPAN----Y--VK 55

Query: 132 P 132
           P
Sbjct: 56  P 56

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens} Length = 58

 Score = 66.8 bits (164), Expect = 3e-16
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALY +E    DEL F+ G+ I +    D N   WW      + G +P N
Sbjct: 6   FRALYTFEPRTPDELYFEEGDIIYITDMSDTN---WWKGTSKGRTGLIPSN 53

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1 Length = 62

 Score = 66.9 bits (164), Expect = 3e-16
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALYD+EA   +EL+FK GE I VL   D N   WW  + +   G  P N
Sbjct: 8   VRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSN 55

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 78

 Score = 67.4 bits (165), Expect = 3e-16
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A+YDY  +  DELSF+ G  I V++K D+    W+   +N   G  P N
Sbjct: 20  VVAIYDYTKDKEDELSFQEGAIIYVIKKNDDG---WYEGVMNGVTGLFPGN 67

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A Length = 77

 Score = 67.4 bits (165), Expect = 4e-16
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
           V ALYDY+ N+  EL+ +  E   +L   + +   WW  +  N  EGY P +
Sbjct: 23  VIALYDYQTNDPQELALRCDEEYYLLDSSEIH---WWRVQDKNGHEGYAPSS 71

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A Length = 57

 Score = 66.8 bits (164), Expect = 4e-16
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 6/53 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           V AL+D+  N+ ++L FK G+ + +  K +E     WW       K G +P  
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ----WWNAEDSEGKRGMIPVP 52

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A Length = 79

 Score = 67.4 bits (165), Expect = 4e-16
 Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
             ALYDYEA   D+LSF  GE   +L   +    +WW   S    + GY+P  
Sbjct: 8   FEALYDYEARTEDDLSFHKGEKFQILNSSEG---DWWEARSLTTGETGYIPSI 57

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A 1qwf_A 1prl_C ... Length = 84

 Score = 67.4 bits (165), Expect = 4e-16
 Identities = 20/53 (37%), Positives = 25/53 (47%), Gaps = 5/53 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
             ALYDY A    +LSF  GE   +L  G  +   WW   S    + GY+P N
Sbjct: 9   FVALYDYNATRWTDLSFHKGEKFQILEFGPGD---WWEARSLTTGETGYIPSN 58

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus} Length = 109

 Score = 67.9 bits (166), Expect = 5e-16
 Identities = 22/53 (41%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
             ALYDYEA  T++LSFK GE   ++   + +   WW   S    K GY+P N
Sbjct: 30  FVALYDYEARTTEDLSFKKGERFQIINNTEGD---WWEARSIATGKSGYIPSN 79

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A Length = 68

 Score = 66.5 bits (163), Expect = 6e-16
 Identities = 12/51 (23%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             A +D++A    EL  + G+ + + ++ D+N   W+  + + + G  PR 
Sbjct: 10  ARAKFDFKAQTLKELPLQKGDIVYIYKQIDQN---WYEGEHHGRVGIFPRT 57

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 66.7 bits (163), Expect = 6e-16
 Identities = 14/53 (26%), Positives = 23/53 (43%), Gaps = 6/53 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           +  L DY + +     F+ GE + V+     +E  WW   S    +E Y+P  
Sbjct: 20  LAVLSDYPSPDISPPIFRRGEKLRVI----SDEGGWWKAISLSTGRESYIPGI 68

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 66.6 bits (163), Expect = 6e-16
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           AL D+E ++ DEL F+  + I ++ + DE+    W  +LN   G+ P  
Sbjct: 12  ALLDFERHDDDELGFRKNDIITIISQKDEH---CWVGELNGLRGWFPAK 57

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A Length = 60

 Score = 66.0 bits (162), Expect = 7e-16
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALY +    + +L F+ G+ I +L+K D    +WW  ++N +EG  P N
Sbjct: 6   AVALYSFAGEESGDLPFRKGDVITILKKSDSQN-DWWTGRVNGREGIFPAN 55

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 66.6 bits (163), Expect = 8e-16
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
           V ALYDY+ N+  EL+ +  E   +L   + +   WW  +  N  EGYVP +
Sbjct: 22  VIALYDYQTNDPQELALRRNEEYCLLDSSEIH---WWRVQDRNGHEGYVPSS 70

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 62

 Score = 65.7 bits (161), Expect = 9e-16
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 9/64 (14%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V AL+ YEA   ++L F+ G+ I+VL K +E    W   +   K G  P+     +  V+
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEE---WLEGESKGKVGIFPKV----F--VE 58

Query: 132 PSAT 135
            SAT
Sbjct: 59  DSAT 62

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A Length = 64

 Score = 65.7 bits (161), Expect = 1e-15
 Identities = 21/51 (41%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
              L+ Y   N DEL+F+ GE I ++ K +  E  WW  +LN KEG  P N
Sbjct: 9   CRTLFPYTGTNEDELTFREGEIIHLISK-ETGEAGWWKGELNGKEGVFPDN 58

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A Length = 67

 Score = 65.7 bits (161), Expect = 1e-15
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRN 122
           V ALYDY   N ++L  + G+   +L + +     WW ++  N +EGY+P N
Sbjct: 11  VVALYDYMPMNANDLQLRKGDEYFILEESNLP---WWRARDKNGQEGYIPSN 59

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 81

 Score = 66.3 bits (162), Expect = 1e-15
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
            LYDY+A N+ ELS    E I V      +  +W   +  N++G VP  
Sbjct: 22  VLYDYDAANSTELSLLADEVITVFSVVGMDS-DWLMGERGNQKGKVPIT 69

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A Length = 58

 Score = 65.7 bits (161), Expect = 1e-15
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V AL+D++     EL F+ G+ I V+   D N   WW    + + G  PRN
Sbjct: 5   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 52

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens} Length = 86

 Score = 66.4 bits (162), Expect = 1e-15
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
           V A +DY A    EL  K  E + +L    ++ + WW  +   N+ GYVP N
Sbjct: 34  VIAKWDYTAQQDQELDIKKNERLWLL----DDSKTWWRVRNAANRTGYVPSN 81

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A Length = 60

 Score = 65.3 bits (160), Expect = 1e-15
 Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
             YD+ A + DEL+ K+G+ + +L   D+  ++WW  +L  + K G VP  
Sbjct: 7   VQYDFMAESQDELTIKSGDKVYILD--DKKSKDWWMCQLVDSGKSGLVPAQ 55

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens} Length = 79

 Score = 65.8 bits (161), Expect = 1e-15
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             AL+D+  N+  EL+FK G+ I +L + +++   W    +    G  P +
Sbjct: 21  AEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLS 68

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae} Length = 71

 Score = 65.7 bits (161), Expect = 1e-15
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 4/53 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
               YD+ A + DEL+ K+G+ + +L   D+  ++WW  +L  + K G VP  
Sbjct: 9   GIVQYDFMAESQDELTIKSGDKVYILD--DKKSKDWWMCQLVDSGKSGLVPAQ 59

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens} Length = 68

 Score = 65.7 bits (161), Expect = 1e-15
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
              LYD+E  N  EL FK G+ I +  + DEN   W+   ++ + G+ P N
Sbjct: 6   CRGLYDFEPENQGELGFKEGDIITLTNQIDEN---WYEGMIHGESGFFPIN 53

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A Length = 58

 Score = 65.3 bits (160), Expect = 1e-15
 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALYDY+A   DEL+FK G+ IIV +K       WW  +LN K G+VP N
Sbjct: 6   VKALYDYDAQTGDELTFKEGDTIIVHQKDPAG---WWEGELNGKRGWVPAN 53

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 65.4 bits (160), Expect = 2e-15
 Identities = 12/51 (23%), Positives = 24/51 (47%), Gaps = 5/51 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           A+Y +E ++   +S   GE + ++ +      + W    +    EGYVP +
Sbjct: 12  AIYHFEGSSEGTISMAEGEDLSLMEEDKG---DGWTRVRRKEGGEGYVPTS 59

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens} Length = 72

 Score = 65.4 bits (160), Expect = 2e-15
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A+YD+EA   +EL+FK GE I VL   D N   WW  + +   G  P N
Sbjct: 20  VRAIYDFEAAEDNELTFKAGEIITVLDDSDPN---WWKGETHQGIGLFPSN 67

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A Length = 65

 Score = 65.1 bits (159), Expect = 2e-15
 Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 11/59 (18%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--------NNKEGYVPRN 122
           V ALYDY+  +  E++ K G+ + +L   +++   WW  ++          ++G+VP  
Sbjct: 4   VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVKITVNGKTYERQGFVPAA 59

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens} Length = 68

 Score = 65.4 bits (160), Expect = 2e-15
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
             A+ D+ A    +L+FK GE ++V+ K  +    WW +K     EG VPR 
Sbjct: 13  YIAVGDFTAQQVGDLTFKKGEILLVIEKKPDG---WWIAKDAKGNEGLVPRT 61

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1 Length = 67

 Score = 65.0 bits (159), Expect = 2e-15
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
           V A+YD++A    +L  + G+  I+L K D +   WW ++     EGY+P N
Sbjct: 5   VVAMYDFQATEAHDLRLERGQEYIILEKNDLH---WWRARDKYGSEGYIPSN 53

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A Length = 62

 Score = 64.6 bits (158), Expect = 2e-15
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           V AL+ YE ++  +L F+ GE + +L    E   EWW   S    +EG++P N
Sbjct: 9   VIALHSYEPSHDGDLGFEKGEQLRIL----EQSGEWWKAQSLTTGQEGFIPFN 57

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus} Length = 73

 Score = 65.0 bits (159), Expect = 3e-15
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALYD+E  N  EL F+ G+ I +  + DEN   W+   L+ + G+ P +
Sbjct: 16  CKALYDFEPENDGELGFREGDLITLTNQIDEN---WYEGMLHGQSGFFPLS 63

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens} Length = 58

 Score = 64.5 bits (158), Expect = 3e-15
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
               +DY+A + DEL+   GE I  +RK D     WW  ++N + G  P N
Sbjct: 4   AIVEFDYQAQHDDELTISVGEIITNIRKEDGG---WWEGQINGRRGLFPDN 51

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A Length = 74

 Score = 65.0 bits (159), Expect = 3e-15
 Identities = 21/51 (41%), Positives = 35/51 (68%), Gaps = 2/51 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             A YD++A   DELSFK G+ + VL +  E ++ W+ ++LN K+G++P+N
Sbjct: 12  AIAKYDFKATADDELSFKRGDILKVLNE--ECDQNWYKAELNGKDGFIPKN 60

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} Length = 68

 Score = 64.6 bits (158), Expect = 3e-15
 Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
               + Y   N DEL  K G+ I V+ + +E    WW   LN K G  P N
Sbjct: 10  CQVAFSYLPQNDDELELKVGDIIEVVGEVEEG---WWEGVLNGKTGMFPSN 57

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A Length = 60

 Score = 64.6 bits (158), Expect = 3e-15
 Identities = 16/61 (26%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
             + YD+ A N+ ELS    + + +L    ++ R+WW  +  +   G+VP N+L +    
Sbjct: 4   AKSKYDFVARNSSELSVMKDDVLEIL----DDRRQWWKVRNASGDSGFVPNNILDIMRTP 59

Query: 131 Q 131
           +
Sbjct: 60  E 60

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus} Length = 60

 Score = 64.5 bits (158), Expect = 3e-15
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALY Y+A +TDELSF   + I ++++       WW  +L  K+G  P N
Sbjct: 8   CKALYAYDAQDTDELSFNANDIIDIIKEDPSG---WWTGRLRGKQGLFPNN 55

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens} Length = 65

 Score = 64.5 bits (158), Expect = 3e-15
 Identities = 11/49 (22%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             +D++A +  EL+ + G+ + + ++ D+N   W   + + + G  P N
Sbjct: 6   LKFDFQAQSPKELTLQKGDIVYIHKEVDKN---WLEGEHHGRLGIFPAN 51

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D Length = 60

 Score = 64.5 bits (158), Expect = 3e-15
 Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 9/57 (15%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           V ALYDY+    DELSFK G+ +  L + DE     W        G +    LGLYP
Sbjct: 6   VRALYDYDGQEQDELSFKAGDELTKLGEEDEQ---GWC------RGRLDSGQLGLYP 53

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 65.1 bits (159), Expect = 3e-15
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALYDY+A   DE+SF   + I  +   D+    WW      + G  P N
Sbjct: 20  AVALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPAN 67

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens} Length = 65

 Score = 64.6 bits (158), Expect = 3e-15
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
              L++Y   N DEL  K G+ I +  + +E    WW   LNNK G  P N
Sbjct: 4   CKVLFEYIPQNEDELELKVGDIIDINEEVEEG---WWSGTLNNKLGLFPSN 51

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A Length = 67

 Score = 64.2 bits (157), Expect = 4e-15
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
           V A +DY A    EL  K  E + +L    ++ + WW  +   N+ GYVP N
Sbjct: 7   VIAKWDYTAQQDQELDIKKNERLWLL----DDSKTWWRVRNAANRTGYVPSN 54

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A Length = 65

 Score = 64.2 bits (157), Expect = 4e-15
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
              L++Y   N DEL  K G+ I +  + +E    WW   LNNK G  P N
Sbjct: 10  CKVLFEYIPQNEDELELKVGDIIDINEEVEEG---WWSGTLNNKLGLFPSN 57

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 93

 Score = 64.8 bits (158), Expect = 5e-15
 Identities = 19/49 (38%), Positives = 25/49 (51%), Gaps = 1/49 (2%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY +EA N DE+SF +G+ I V  K    E  W +       G+ P N
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEK-TVGEPGWLYGSFQGNFGWFPCN 57

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 90

 Score = 64.8 bits (158), Expect = 5e-15
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW--WSKLNNKEGYVPRN 122
             A Y ++ +   ELSF+ GE I ++RK +EN   W+        ++G  P +
Sbjct: 20  AVAQYTFKGDLEVELSFRKGEHICLIRKVNEN---WYEGRITGTGRQGIFPAS 69

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 67.3 bits (164), Expect = 5e-15
 Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 3/66 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
             A+ DYE  +  E++  TG+ + V+ K +     WW+ ++  K G++P + L       
Sbjct: 14  YRAIADYEKTSGSEMALSTGDVVEVVEKSESG---WWFCQMKAKRGWIPASFLEPLDSPD 70

Query: 132 PSATPQ 137
            +  P+
Sbjct: 71  ETEDPE 76

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B Length = 193

 Score = 66.6 bits (162), Expect = 9e-15
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
             A+  Y A   DE+S   GE + V+ K  +    WW  + ++  GY P   L    +  
Sbjct: 84  YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYLQKSGQDV 140

Query: 132 PSATPQ 137
             A  Q
Sbjct: 141 SQAQRQ 146

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus} Length = 68

 Score = 64.2 bits (157), Expect = 5e-15
 Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           AL +Y   N  +L F  G+ I++ R+ DEN   W+  ++N   G  P +
Sbjct: 12  ALCNYRGKNPGDLKFNKGDVILLRRQLDEN---WYQGEINGVSGIFPAS 57

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 79

 Score = 64.3 bits (157), Expect = 6e-15
 Identities = 18/49 (36%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY ++A   DEL+ + G+ +I+  K +E    WW+  LN K+G+ P  
Sbjct: 12  ALYSFQARQDDELNLEKGDIVIIHEKKEEG---WWFGSLNGKKGHFPAA 57

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} PDB: 2d1x_A Length = 65

 Score = 63.8 bits (156), Expect = 6e-15
 Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALYDY+A   DE+SF   + I  +   D+    WW      + G  P N
Sbjct: 12  AIALYDYQAAGDDEISFDPDDIITNIEMIDDG---WWRGVCKGRYGLFPAN 59

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A Length = 64

 Score = 63.8 bits (156), Expect = 6e-15
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A ++++  N DELSF  G+ I V R  +     WW    N + G+ P N
Sbjct: 9   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSN 56

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 63.9 bits (156), Expect = 7e-15
 Identities = 14/54 (25%), Positives = 27/54 (50%), Gaps = 6/54 (11%)

Query: 72  VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           V A+  Y    +TDE+SF  G+  IV  + ++    W W  +   +++G +  +
Sbjct: 10  VRAILPYTKVPDTDEISFLKGDMFIVHNELEDG---WMWVTNLRTDEQGLIVED 60

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A Length = 62

 Score = 63.7 bits (156), Expect = 7e-15
 Identities = 19/52 (36%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS-KLNNKEGYVPRN 122
               YDY+A + DEL+ + GE I  ++K  E   E W   +LN + G  P N
Sbjct: 4   YIVEYDYDAVHDDELTIRVGEIIRNVKKLQE---EGWLEGELNGRRGMFPDN 52

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A Length = 69

 Score = 63.8 bits (156), Expect = 7e-15
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
              ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N
Sbjct: 5   CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 54

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens} Length = 73

 Score = 63.9 bits (156), Expect = 8e-15
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
              ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N
Sbjct: 12  CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 61

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 73

 Score = 63.9 bits (156), Expect = 8e-15
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             A Y++ A +  ELS + G+ + +  +    ++ WW  + N + G+ P  
Sbjct: 10  AVARYNFAARDMRELSLREGDVVRIYSR-IGGDQGWWKGETNGRIGWFPST 59

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 76

 Score = 63.9 bits (156), Expect = 8e-15
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A ++++  N DELS   G+ I V R  +     WW   LN + G+ P N
Sbjct: 13  VKARFNFKQTNEDELSVCKGDIIYVTRVEEGG---WWEGTLNGRTGWFPSN 60

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A Length = 76

 Score = 63.9 bits (156), Expect = 8e-15
 Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 6/66 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN---NKEGYVPRNLLGLYP 128
           V  +YD +A+N DEL+F  GE IIV  + D+    WW   +     ++G  P + + +  
Sbjct: 13  VKTIYDCQADNDDELTFIEGEVIIVTGEEDQE---WWIGHIEGQPERKGVFPVSFVHILS 69

Query: 129 RVQPSA 134
              PS+
Sbjct: 70  DSGPSS 75

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A Length = 59

 Score = 63.4 bits (155), Expect = 8e-15
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A ++++  N DELSF  G+ I V R  +     WW    N + G+ P N
Sbjct: 7   VRAKFNFQQTNEDELSFSKGDVIHVTRVEEGG---WWEGTHNGRTGWFPSN 54

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens} Length = 69

 Score = 63.5 bits (155), Expect = 9e-15
 Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 10/67 (14%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRNLLGLYPRV 130
           V ALYDY AN +DEL+   G+ I V  K +E+   WW+  +   +EGY P N    +  V
Sbjct: 9   VVALYDYTANRSDELTIHRGDIIRVFFKDNED---WWYGSIGKGQEGYFPAN----H--V 59

Query: 131 QPSATPQ 137
                 Q
Sbjct: 60  ASETLYQ 66

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A Length = 58

 Score = 63.0 bits (154), Expect = 1e-14
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 7/54 (12%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWS---KLNNKEGYVPRN 122
             A YDY+A   +EL+F   + II +   D++    WW    + +  +G  P N
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDDD----WWLGELEKDGSKGLFPSN 52

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 70

 Score = 63.4 bits (155), Expect = 1e-14
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
              ++ YEA N DEL+ K G+ + ++ K D  +  WW  +LN + G  P N
Sbjct: 10  CKVIFPYEAQNDDELTIKEGDIVTLINK-DCIDVGWWEGELNGRRGVFPDN 59

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens} Length = 92

 Score = 64.0 bits (156), Expect = 1e-14
 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             + Y   N DEL  K G+ I V+ + +E    WW   LN K G  P N
Sbjct: 23  VAFSYLPQNDDELELKVGDIIEVVGEVEEG---WWEGVLNGKTGMFPSN 68

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 70

 Score = 63.0 bits (154), Expect = 1e-14
 Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 5/53 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
             A+Y Y   N DEL  + G+ + V+++ D+    W+   S+   K G  P N
Sbjct: 10  YRAMYQYRPQNEDELELREGDRVDVMQQCDDG---WFVGVSRRTQKFGTFPGN 59

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens} Length = 70

 Score = 63.0 bits (154), Expect = 1e-14
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 5/51 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 122
           A +++  +   E+SF+ GE I +LR+ DEN   W+  ++   +++G  P  
Sbjct: 12  AKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFPIT 59

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A Length = 67

 Score = 63.0 bits (154), Expect = 1e-14
 Identities = 16/55 (29%), Positives = 30/55 (54%), Gaps = 5/55 (9%)

Query: 70  GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRN 122
           G   A +++  +   E+SF+ GE I +LR+ DEN   W+  ++   +++G  P  
Sbjct: 7   GEAIAKFNFNGDTQVEMSFRKGERITLLRQVDEN---WYEGRIPGTSRQGIFPIT 58

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 74

 Score = 63.1 bits (154), Expect = 2e-14
 Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 4/51 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             AL  + A   + L+F   + I VL +  EN   WW+ +++   G+ P++
Sbjct: 13  AQALCSWTAKKDNHLNFSKHDIITVLEQ-QEN---WWFGEVHGGRGWFPKS 59

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 63.3 bits (154), Expect = 2e-14
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
            Y  ++Y A   DELS   G  +IV+ K  +    WW    N + G+ P N
Sbjct: 20  AYVKFNYMAEREDELSLIKGTKVIVMEKCSDG---WWRGSYNGQVGWFPSN 67

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 63.2 bits (154), Expect = 2e-14
 Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 6/54 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
                ++      EL+F+ G+ + +L   +    + W+      + +EG +   
Sbjct: 20  CITKCEHTRPKPGELAFRKGDVVTILEACEN---KSWYRVKHHTSGQEGLLAAG 70

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 58

 Score = 62.2 bits (152), Expect = 2e-14
 Identities = 11/52 (21%), Positives = 20/52 (38%), Gaps = 6/52 (11%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
            LY Y   + DE++   G+ I ++ +        W    +    + G VP  
Sbjct: 6   VLYAYVQKDDDEITITPGDKISLVARDTG---SGWTKINNDTTGETGLVPTT 54

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 97

 Score = 63.0 bits (153), Expect = 3e-14
 Identities = 15/59 (25%), Positives = 25/59 (42%), Gaps = 10/59 (16%)

Query: 72  VYALYDYEANNT--------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             AL+DY+            +EL FK G+ I V    D +   ++  +   + G +P N
Sbjct: 20  FVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKDADG--FYRGETCARLGLIPCN 76

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A Length = 68

 Score = 61.9 bits (151), Expect = 4e-14
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-----KEGYVPRN 122
           V A + Y+++  D+L+F+  + IIV    D    EW++ +  +      EG  P++
Sbjct: 10  VVAQFPYKSDYEDDLNFEKDQEIIVTSVEDA---EWYFGEYQDSNGDVIEGIFPKS 62

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 72

 Score = 61.1 bits (149), Expect = 7e-14
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALY  +A +  ELSF  G     +    E    W    LN K G +P N
Sbjct: 13  AKALYACKAEHDSELSFTAGTVFDNVHPSQEP--GWLEGTLNGKTGLIPEN 61

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 69

 Score = 61.1 bits (149), Expect = 7e-14
 Identities = 19/52 (36%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-EGYVPRN 122
           V ALYDY+A  +DEL+F  G  I  + K       WW      + + Y P N
Sbjct: 10  VKALYDYKAKRSDELTFCRGALIHNVSKEPGG---WWKGDYGTRIQQYFPSN 58

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A Length = 108

 Score = 62.1 bits (151), Expect = 8e-14
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 8/58 (13%)

Query: 70  GAVYA--LYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRN 122
           G++YA  LYD++A   DEL+   GE + +    +    EW+ +K        G VP  
Sbjct: 4   GSLYAIVLYDFKAEKADELTTYVGENLFICAHHNC---EWFIAKPIGRLGGPGLVPVG 58

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus} Length = 120

 Score = 62.3 bits (151), Expect = 9e-14
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLYPRV 130
            LY+++A   DEL    GE + +    D    EW+ +K  N     G VP + + +   +
Sbjct: 8   TLYEFKAERDDELDVSPGENLSICAHYDY---EWFIAKPINRLGGPGLVPVSYVRIIDLM 64

Query: 131 QPSATP 136
            P+   
Sbjct: 65  DPAKYA 70

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 80

 Score = 60.9 bits (148), Expect = 1e-13
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 72  VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRN 122
             ALYD+   N + E++ K G+ + +L K D    + +WW  +  N   GY+P N
Sbjct: 17  ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 71

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 64.3 bits (156), Expect = 1e-13
 Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 2/49 (4%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           A YD++A   DELSFK G+ + VL +  E ++ W+ ++LN K+G++P+N
Sbjct: 5   AKYDFKATADDELSFKRGDILKVLNE--ECDQNWYKAELNGKDGFIPKN 51

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A Length = 217

 Score = 59.3 bits (143), Expect = 7e-12
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V AL+D++     EL F+ G+ I V+   D N   WW    + + G  PRN
Sbjct: 161 VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 208

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 61.0 bits (148), Expect = 2e-13
 Identities = 14/52 (26%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
            +Y Y   N DEL    G+ I +      +  E W    S      G +P N
Sbjct: 21  VIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPEN 72

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens} Length = 89

 Score = 60.6 bits (147), Expect = 2e-13
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 9/64 (14%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENERE--WWWSKLNN-KEGYVPRNLLGLYP 128
             A++DYEA   +EL+ + G+ + VL +      +  WW  +L + + G  P N    Y 
Sbjct: 32  WTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSN----Y- 86

Query: 129 RVQP 132
            V P
Sbjct: 87  -VAP 89

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus} Length = 142

 Score = 62.0 bits (150), Expect = 2e-13
 Identities = 17/53 (32%), Positives = 29/53 (54%), Gaps = 2/53 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
             A YD+ A +  ELS K G+ I +L K  + ++ WW  ++  + G+ P N +
Sbjct: 8   AKARYDFCARDRSELSLKEGDIIKILNK--KGQQGWWRGEIYGRIGWFPSNYV 58

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1 Length = 69

 Score = 60.1 bits (146), Expect = 2e-13
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 72  VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRN 122
             ALYD+   N + E++ K G+ + +L K D    + +WW  +  N   GY+P N
Sbjct: 10  ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 64

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A Length = 61

 Score = 59.5 bits (145), Expect = 2e-13
 Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRN 122
           V AL+DY+A   DEL+F     I  + K D     WW      K+  + P N
Sbjct: 6   VKALFDYKAQREDELTFTKSAIIQNVEKQDGG---WWRGDYGGKKQLWFPSN 54

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae} Length = 59

 Score = 59.1 bits (144), Expect = 4e-13
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
           ALYD+E  N +EL    G+ + +  K  +     W    ++  +K G VP  
Sbjct: 6   ALYDFEPENDNELRLAEGDIVFISYKHGQG----WLVAENESGSKTGLVPEE 53

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A Length = 92

 Score = 59.8 bits (145), Expect = 4e-13
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 72  VYALYDYEANNTD-ELSFKTGECIIVLRKGD--ENEREWWWSKLNN-KEGYVPRNLLGLY 127
             ALYD+   N + E++ K G+ + +L K D    + +WW  +  N   GY+P N + + 
Sbjct: 17  ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII 76

Query: 128 PRVQPSATPQ 137
            R +      
Sbjct: 77  KRRKKIEHVD 86

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae} Length = 73

 Score = 58.9 bits (143), Expect = 5e-13
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 7/52 (13%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
           ALYD+E  N +EL    G+ + +  K  +     W    ++  +K G VP  
Sbjct: 10  ALYDFEPENDNELRLAEGDIVFISYKHGQG----WLVAENESGSKTGLVPEE 57

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A Length = 71

 Score = 58.8 bits (143), Expect = 6e-13
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRN 122
           V AL+DY+A   DEL+F     I  + K +     WW      K+  + P N
Sbjct: 9   VKALFDYKAQREDELTFIKSAIIQNVEKQEGG---WWRGDYGGKKQLWFPSN 57

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B Length = 115

 Score = 59.7 bits (144), Expect = 8e-13
 Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENERE--WWW----------SKLNNKEGYV 119
           V A +DY A +TDEL  K G+ ++V+   +  E++  W             +L    G  
Sbjct: 47  VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 106

Query: 120 PRN 122
           P N
Sbjct: 107 PEN 109

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A Length = 64

 Score = 58.0 bits (141), Expect = 9e-13
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 7/52 (13%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
           A+YDY A + DE+SF+ G+ I+ ++  D+     W     +   + G +P N
Sbjct: 11  AMYDYSAQDEDEVSFRDGDYIVNVQPIDDG----WMYGTVQRTGRTGMLPAN 58

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A Length = 62

 Score = 58.2 bits (141), Expect = 1e-12
 Identities = 13/42 (30%), Positives = 25/42 (59%), Gaps = 3/42 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN 113
           V ALYDY+  +  E++ K G+ + +L   +++   WW  ++N
Sbjct: 24  VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVN 62

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 96

 Score = 58.8 bits (142), Expect = 1e-12
 Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 11/74 (14%)

Query: 72  VYALYDYE------ANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNL 123
             A Y Y        N   EL    G+ + V    DE   + ++    L+ + G VP N 
Sbjct: 20  CVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDE---DGFYEGELLDGQRGLVPSNF 76

Query: 124 LGLYPRVQPSATPQ 137
           +      +      
Sbjct: 77  VDFVQDNESRLAST 90

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A Length = 65

 Score = 58.2 bits (141), Expect = 1e-12
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 6/56 (10%)

Query: 72  VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRNLL 124
           V A+  Y    +TDE+SF  G+  IV  + ++    W W  +   +++G +  +L+
Sbjct: 8   VRAILPYTKVPDTDEISFLKGDMFIVHNELEDG---WMWVTNLRTDEQGLIVEDLV 60

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A Length = 69

 Score = 57.7 bits (140), Expect = 2e-12
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 74  ALYDYEAN-NTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
           A YD+  + ++ EL  K G+ + + R        W  +KL   +KEG+VP  
Sbjct: 7   AAYDFPGSGSSSELPLKKGDIVFISRDEPSG---WSLAKLLDGSKEGWVPTA 55

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 76

 Score = 57.8 bits (140), Expect = 2e-12
 Identities = 20/58 (34%), Positives = 33/58 (56%), Gaps = 9/58 (15%)

Query: 72  VYALYDYEANNT-------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           + ALYDY+   +        EL+F TG+ I V  + DE+   +++ +LN ++G VP N
Sbjct: 10  MVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDED--GFYYGELNGQKGLVPSN 65

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens} Length = 341

 Score = 61.9 bits (149), Expect = 2e-12
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
             AL+D+  N+  EL+FK G+ I +L + +++   W    +    G  P + + +     
Sbjct: 177 AEALFDFTGNSKLELNFKAGDVIFLLSRINKD---WLEGTVRGATGIFPLSFVKILKDFP 233

Query: 132 PSATPQ 137
               P 
Sbjct: 234 EEDDPT 239

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans} Length = 174

 Score = 60.2 bits (145), Expect = 2e-12
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 4/81 (4%)

Query: 43  CEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDE 102
                  F+       S+           V   + +      +L F+ GE + +L K ++
Sbjct: 92  IPALLNHFKMRVLTEASLLAAYKKPIIEVVVGTFKFTGERETDLPFEQGERLEILSKTNQ 151

Query: 103 NEREWWWSK-LNNKEGYVPRN 122
           +   WW ++      G VP N
Sbjct: 152 D---WWEARNALGTTGLVPAN 169

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens} Length = 67

 Score = 57.3 bits (139), Expect = 2e-12
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 7/60 (11%)

Query: 67  LNNGAVY--ALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           L NG +Y   +     N  +   L+ + GE + V +         W  + N K G+ P  
Sbjct: 2   LQNGPIYARVIQKRVPNAYDKTALALEVGELVKVTKINVSG---QWEGECNGKRGHFPFT 58

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus} Length = 77

 Score = 57.5 bits (139), Expect = 2e-12
 Identities = 14/58 (24%), Positives = 30/58 (51%), Gaps = 7/58 (12%)

Query: 80  ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSATPQ 137
           A    E++ K G+ + +L   +++   WW  ++N+++G+VP      Y +   S T +
Sbjct: 2   AMGPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA----YVKKLDSGTGK 52

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 88

 Score = 57.5 bits (139), Expect = 3e-12
 Identities = 9/51 (17%), Positives = 18/51 (35%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
                   A +   L+ + G+ + V R         W  ++N ++G  P  
Sbjct: 21  AIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPFT 68

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae} Length = 70

 Score = 57.0 bits (138), Expect = 3e-12
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 7/54 (12%)

Query: 72  VYALYDYEANNTD--ELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
             ALY Y+A++ D  E+SF+  E + V     + E  WW ++  N + G +P N
Sbjct: 8   AKALYPYDADDDDAYEISFEQNEILQVS----DIEGRWWKARRANGETGIIPSN 57

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 80

 Score = 57.1 bits (138), Expect = 4e-12
 Identities = 13/56 (23%), Positives = 26/56 (46%), Gaps = 8/56 (14%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNK-----EGYVPRN 122
                 Y A+ +++LS   G+ I++L+K       WW  +L  +     +G+ P +
Sbjct: 10  AQVTSAYVASGSEQLSLAPGQLILILKKNTSG---WWQGELQARGKKRQKGWFPAS 62

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 92

 Score = 57.3 bits (138), Expect = 4e-12
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRVQP 132
           A  ++ A    ++S   G+ + V++K D    +  W       +G+V  + L  Y   + 
Sbjct: 22  AERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRS 81

Query: 133 SATPQ 137
            +   
Sbjct: 82  HSDAS 86

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 56.6 bits (137), Expect = 4e-12
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 9/58 (15%)

Query: 72  VYALYDYEANNT-------DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           + A  DY+  +          L+ + G+ ++V    D+    +++ +L    G VP +
Sbjct: 10  MIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMDDQ--GFYYGELGGHRGLVPAH 65

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A Length = 58

 Score = 56.4 bits (136), Expect = 5e-12
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 3/49 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             + Y A   DELS   G  + V+    +    WW    N + G+ P N
Sbjct: 6   VXFAYVAEREDELSLVXGSRVTVMEXCSDG---WWRGSYNGQIGWFPSN 51

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 60.6 bits (146), Expect = 5e-12
 Identities = 13/52 (25%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
           V   + +      +L F+ GE + +L K +++   WW ++      G VP N
Sbjct: 150 VVGTFKFTGERETDLPFEQGERLEILSKTNQD---WWEARNALGTTGLVPAN 198

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans} Length = 308

 Score = 48.7 bits (115), Expect = 8e-08
 Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)

Query: 76  YDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
               A +  +L  K G+ ++V +K        + ++L+ + G VP  
Sbjct: 256 RVPNAYDPTQLRVKKGQTVLVTQKMSNG---MYKAELDGQIGSVPHT 299

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 56.7 bits (137), Expect = 5e-12
 Identities = 13/53 (24%), Positives = 25/53 (47%), Gaps = 8/53 (15%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL----NNKEGYVPRN 122
           ++ DYE +  +   F+ G  + VL +       WW+ ++       +G+VP N
Sbjct: 15  SIADYEGDE-ETAGFQEGVSMEVLERNPN---GWWYCQILDGVKPFKGWVPSN 63

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A Length = 58

 Score = 56.1 bits (136), Expect = 5e-12
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 6/52 (11%)

Query: 74  ALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
           A YD+    +  EL  K G+ I + R+       W   KL   +KEG+VP  
Sbjct: 5   AAYDFPGSGSPSELPLKKGDVIYITREEPSG---WSLGKLLDGSKEGWVPTA 53

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 77

 Score = 55.4 bits (134), Expect = 1e-11
 Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 6/54 (11%)

Query: 72  VYALYDYEAN-NTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
              +YD+ A    +EL+   GE I V           W        ++G VP +
Sbjct: 12  ARVMYDFAAEPGNNELTVTEGEIITVTNPNVG---GGWLEGKNNKGEQGLVPTD 62

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A Length = 495

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 2/51 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALYD+ A+  + LS   GE + VL     +  EW  ++  N +G+VP N
Sbjct: 46  FVALYDFVASGDNTLSITKGEKLRVLGY--NHNGEWCEAQTKNGQGWVPSN 94

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A Length = 67

 Score = 54.6 bits (132), Expect = 2e-11
 Identities = 10/53 (18%), Positives = 20/53 (37%), Gaps = 5/53 (9%)

Query: 72  VYALYDYE--ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             A+      A +   L+ + G+ + V R         W  ++N ++G  P  
Sbjct: 4   AKAIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPFT 53

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A Length = 73

 Score = 54.7 bits (132), Expect = 2e-11
 Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V+  +     +TD L  K G+ I ++ K        W   LNNK G     
Sbjct: 14  VHTDFTPSPYDTDSLKLKKGDIIDIISKPPMG---TWMGLLNNKVGTFKFI 61

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A Length = 450

 Score = 58.5 bits (142), Expect = 3e-11
 Identities = 10/51 (19%), Positives = 21/51 (41%), Gaps = 5/51 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           A Y++      +L F  G+ + ++      +   W+       +EG +P N
Sbjct: 16  AKYNFHGTAEQDLPFCKGDVLTIV---AVTKDPNWYKAKNKVGREGIIPAN 63

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1 Length = 72

 Score = 54.3 bits (131), Expect = 4e-11
 Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 72  VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
           V  ++ + A NN   LSF  G+ + +L   +++   W + +       G+ P +
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKD--GWLYGEHDTTKARGWFPSS 61

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus} Length = 71

 Score = 54.2 bits (131), Expect = 4e-11
 Identities = 8/53 (15%), Positives = 21/53 (39%), Gaps = 5/53 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
             A++ +   + DEL  +  + ++V  + ++    W+   +      G  P  
Sbjct: 9   HRAIFRFVPRHEDELELEVDDPLLVELQAEDY---WYEAYNMRTGARGVFPAY 58

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 79

 Score = 53.5 bits (129), Expect = 7e-11
 Identities = 10/54 (18%), Positives = 23/54 (42%), Gaps = 8/54 (14%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
           V     + A   DE++ +  + ++VL++ D      W       + + G+ P +
Sbjct: 20  VEITKAFFAKQADEVTLQQADVVLVLQQEDG-----WLYGERLRDGETGWFPED 68

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens} Length = 67

 Score = 52.7 bits (127), Expect = 1e-10
 Identities = 12/54 (22%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 72  VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
           V  ++ + A +N   LSF  G+ I +L   +++   W + +   +   G+ P +
Sbjct: 9   VKTIFPHTAGSNKTLLSFAQGDVITLLIPEEKD--GWLYGEHDVSKARGWFPSS 60

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A Length = 108

 Score = 53.5 bits (128), Expect = 2e-10
 Identities = 15/61 (24%), Positives = 25/61 (40%), Gaps = 8/61 (13%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWW--------WSKLNNKEGYVPRNL 123
             AL DY A +   L+   G+ + V  K     R +W        +  L  + GY P ++
Sbjct: 25  AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSI 84

Query: 124 L 124
           +
Sbjct: 85  V 85

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 56.1 bits (134), Expect = 2e-10
 Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 7/66 (10%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V       A +   L+ + GE + V +         W  + N K G+ P      + R+ 
Sbjct: 242 VIQKRVPNAYDKTALALEVGELVKVTKINVSG---QWEGECNGKRGHFPFT----HVRLL 294

Query: 132 PSATPQ 137
               P+
Sbjct: 295 DQQNPE 300

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A Length = 304

 Score = 47.3 bits (111), Expect = 2e-07
 Identities = 15/63 (23%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 76  YDYEANNTDELSFKTGECIIVLRKGDENEREWWW-SKLNNKEGYVPRNLLGLYPRVQPSA 134
           +D+  N+ ++L FK G+ + +  K +E    WW       K G +P   +  Y     S 
Sbjct: 141 FDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVPYVEKYRPASASV 197

Query: 135 TPQ 137
           +  
Sbjct: 198 SAL 200

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B Length = 454

 Score = 55.9 bits (135), Expect = 2e-10
 Identities = 27/63 (42%), Positives = 37/63 (58%), Gaps = 9/63 (14%)

Query: 65  GILNNGA---VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYV 119
           G + +G    V ALYDYEA + ++LSF+ G+ ++VL    E   EWW   S    KEGY+
Sbjct: 1   GAMGSGIRIIVVALYDYEAIHHEDLSFQKGDQMVVL----EESGEWWKARSLATRKEGYI 56

Query: 120 PRN 122
           P N
Sbjct: 57  PSN 59

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A Length = 230

 Score = 55.3 bits (132), Expect = 3e-10
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV 130
           V AL+D+  N+ ++L FK G+ + +  K +E    WW ++    K G +P   +  Y   
Sbjct: 139 VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVPYVEKYRPA 195

Query: 131 QPSATPQ 137
             S +  
Sbjct: 196 SASVSAL 202

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D Length = 466

 Score = 55.7 bits (134), Expect = 3e-10
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
             AL+D+   +  EL FK G+ I V+   D   REWWW ++ + EG+ P + + L     
Sbjct: 33  AEALWDHVTMDDQELGFKAGDVIEVM---DATNREWWWGRVADGEGWFPASFVRLRVNQD 89

Query: 132 PS 133
             
Sbjct: 90  EP 91

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} Length = 67

 Score = 51.9 bits (125), Expect = 3e-10
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 7/55 (12%)

Query: 72  VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
           V A++ + A +N+  LSFK G+ I +L        + W    S+     G+ P +
Sbjct: 10  VKAIFSHAAGDNSTLLSFKEGDLITLLVPEAR---DGWHYGESEKTKMRGWFPFS 61

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A* Length = 62

 Score = 51.4 bits (124), Expect = 3e-10
 Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 7/54 (12%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW---SKLNNKEGYVPRN 122
             A++ +   + DEL  +  + ++V  + ++     W+   +      G  P  
Sbjct: 6   HRAIFRFVPRHEDELELEVDDPLLVELQAEDY----WYEAYNMRTGARGVFPAY 55

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1 Length = 63

 Score = 51.2 bits (123), Expect = 4e-10
 Identities = 10/39 (25%), Positives = 24/39 (61%), Gaps = 3/39 (7%)

Query: 84  DELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
            E++ K G+ + +L   +++   WW  ++N+++G+VP  
Sbjct: 4   REVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 39

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens} Length = 83

 Score = 51.4 bits (123), Expect = 6e-10
 Identities = 13/58 (22%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 72  VYALYDYE-ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP 128
           V AL D+   ++   L+ + G+ I VL +  +     W   ++  +    R  +G +P
Sbjct: 21  VRALKDFWNLHDPTALNVRAGDVITVLEQHPDG---RWKGHIHESQRGTDR--IGYFP 73

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 54.2 bits (129), Expect = 9e-10
 Identities = 12/121 (9%), Positives = 31/121 (25%), Gaps = 5/121 (4%)

Query: 2   PKSHIQKIHFTCTTLAVCSLSFVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQ 61
           P  +++K+  +       + +   Y       +                      +  + 
Sbjct: 174 PVPYVEKLVRSSPHGKHGNRNSNSYG--IPEPAHAYAQPQTTTPLPAVSGSPGAAITPLP 231

Query: 62  EKLGILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPR 121
                             A +   L+ + G+ + V R         W  ++N ++G  P 
Sbjct: 232 STQNGPVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNING---QWEGEVNGRKGLFPF 288

Query: 122 N 122
            
Sbjct: 289 T 289

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A* Length = 303

 Score = 48.5 bits (114), Expect = 8e-08
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 4/51 (7%)

Query: 73  YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRN 122
             LYD+  N+ ++L FK GE ++++ K +E    WW ++  + + G +P  
Sbjct: 129 RTLYDFPGNDAEDLPFKKGEILVIIEKPEEQ---WWSARNKDGRVGMIPVP 176

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens} Length = 486

 Score = 54.0 bits (128), Expect = 1e-09
 Identities = 21/50 (42%), Positives = 27/50 (54%), Gaps = 3/50 (6%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 122
           ALYDYE    DELSFK G+ +  +   DE    W   +L+N + G  P N
Sbjct: 433 ALYDYEGQEHDELSFKAGDELTKMEDEDEQ--GWCKGRLDNGQVGLYPAN 480

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens} Length = 119

 Score = 51.6 bits (123), Expect = 1e-09
 Identities = 8/49 (16%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           A+Y+++ +   +LS + G+ + +      +    +  K    +G  P++
Sbjct: 64  AIYNFQGSGAPQLSLQIGDVVRIQET-CGDWYRGYLIKHKMLQGIFPKS 111

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1 Length = 213

 Score = 52.4 bits (124), Expect = 2e-09
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENERE--WWW----------SKLNNKEGYV 119
           V A +DY A +TDEL  K G+ ++V+   +  E++  W             KL    G  
Sbjct: 145 VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKKLEKCRGVF 204

Query: 120 PRN 122
           P N
Sbjct: 205 PEN 207

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ... Length = 452

 Score = 52.5 bits (126), Expect = 4e-09
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           ALYDYE+    +LSFK GE + ++   +    +WW   S    + GY+P N
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEG---DWWLAHSLSTGQTGYIPSN 54

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A Length = 283

 Score = 51.3 bits (123), Expect = 7e-09
 Identities = 24/66 (36%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V  +YDY A N DEL+F  G+ I VL K D    +WW  +++ + G  P N + L   + 
Sbjct: 5   VIGMYDYTAQNDDELAFSKGQIINVLNKEDP---DWWKGEVSGQVGLFPSNYVKLTTDMD 61

Query: 132 PSATPQ 137
           PS    
Sbjct: 62  PSQQWC 67

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} PDB: 2kt1_A Length = 90

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 14/63 (22%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDEN-----------EREWWW---SKLNNKEGYV 119
           ALY +     ++L    G+ ++V R   +            +   W    ++   + G  
Sbjct: 16  ALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQSVGWMPGLNERTRQRGDF 75

Query: 120 PRN 122
           P  
Sbjct: 76  PGT 78

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 Length = 535

 Score = 49.5 bits (118), Expect = 4e-08
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 5/53 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
             ALYDYE+    +LSFK GE + ++   +    +WW   S    + GY+P N
Sbjct: 88  FVALYDYESRTETDLSFKKGERLQIVNNTEG---DWWLAHSLSTGQTGYIPSN 137

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus} Length = 82

 Score = 46.5 bits (110), Expect = 5e-08
 Identities = 14/59 (23%), Positives = 26/59 (44%), Gaps = 5/59 (8%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN----KEGYVPRNLLGL 126
              L D+ A ++ ELS + G+ + +L +       W   +       +EG VP + L +
Sbjct: 20  TVVLQDFSAAHSSELSIQVGQTVELLER-PSERPGWCLVRTTERSPPQEGLVPSSTLCI 77

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A* Length = 175

 Score = 46.2 bits (109), Expect = 3e-07
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           V AL+ YE ++  +L F+ GE + +L    E   EWW   S    +EG++P N
Sbjct: 15  VIALHSYEPSHDGDLGFEKGEQLRIL----EQSGEWWKAQSLTTGQEGFIPFN 63

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens} Length = 184

 Score = 45.5 bits (107), Expect = 6e-07
 Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 7/67 (10%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGLYPRV 130
           A+Y+++ +   +LS + G+ + +         +W+   L      +G  P++ + +    
Sbjct: 22  AIYNFQGSGAPQLSLQIGDVVRIQETCG----DWYRGYLIKHKMLQGIFPKSFIHIKEVT 77

Query: 131 QPSATPQ 137
                  
Sbjct: 78  VEKRRNT 84

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1 Length = 78

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 4/57 (7%)

Query: 73  YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY 127
           Y +          L    G+ + + +   E E  WW  +    N+ G+ P N +  Y
Sbjct: 22  YGIPPPPGAFGGFLRLNPGDIVELTKA--EAEHNWWEGRNTATNEVGWFPCNRVHPY 76

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A Length = 96

 Score = 38.9 bits (90), Expect = 4e-05
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL 124
           A  D +    +ELSFK GE I ++R  D N    W  +      GY+    +
Sbjct: 33  ACCDVK-GGKNELSFKQGEQIEIIRITD-NPEGKWLGRTARGSYGYIKTTAV 82

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A Length = 70

 Score = 38.4 bits (89), Expect = 4e-05
 Identities = 12/64 (18%), Positives = 22/64 (34%), Gaps = 10/64 (15%)

Query: 72  VYALYDYEAN------NTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNL 123
           +    +Y             L    G+ + + +   E E  WW  +    N+ G+ P N 
Sbjct: 7   MEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKA--EAEHNWWEGRNTATNEVGWFPCNR 64

Query: 124 LGLY 127
           +  Y
Sbjct: 65  VHPY 68

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A Length = 83

 Score = 38.1 bits (88), Expect = 7e-05
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 14/74 (18%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLR---------KGDENERE---WW--WSKLNNKEGYV 119
           ALYDY+    +++    G+ + V +          G E   E   W   +++   + G  
Sbjct: 10  ALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDF 69

Query: 120 PRNLLGLYPRVQPS 133
           P   +    R + S
Sbjct: 70  PGTYVEYIGRKKIS 83

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308

 Score = 39.8 bits (92), Expect = 9e-05
 Identities = 7/52 (13%), Positives = 15/52 (28%), Gaps = 6/52 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDEN------EREWWWSKLNNKEG 117
           +   ++ E +    L F  G+   VL                W +    ++ 
Sbjct: 7   IRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDL 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2lx7_A	60	GAS-7, growth arrest-specific protein 7; structura	99.75
2i0n_A	80	Class VII unconventional myosin; beta-sheet loop,	99.71
2lj0_A	65	Sorbin and SH3 domain-containing protein 1; R85FL,	99.7
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.7
2nwm_A	65	Vinexin; cell adhesion; NMR {Homo sapiens}	99.69
2dl7_A	73	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.68
2xmf_A	60	Myosin 1E SH3; motor protein, SH3 domain; HET: DIA	99.67
2dmo_A	68	Neutrophil cytosol factor 2; SH3 domain, structura	99.67
2dl8_A	72	SLIT-ROBO RHO GTPase-activating protein 2; SH3 dom	99.67
2dl4_A	68	Protein STAC; SH3 domain, STAC protein, SRC homolo	99.67
2ew3_A	68	SH3-containing GRB2-like protein 3; SH3GL3, soluti	99.66
2ebp_A	73	SAM and SH3 domain-containing protein 1; proline-g	99.66
2ekh_A	80	SH3 and PX domain-containing protein 2A; SH3 domai	99.66
2g6f_X	59	RHO guanine nucleotide exchange factor 7; SH3 doma	99.66
1w70_A	60	Neutrophil cytosol factor 4; NADPH oxidase, P40PHO	99.66
2bz8_A	58	SH3-domain kinase binding protein 1; SH3 domain, C	99.66
2fei_A	65	CD2-associated protein; CMS SH3 domain, structural	99.66
1k4u_S	62	Phagocyte NADPH oxidase subunit P67PHOX; SH3-pepti	99.65
2bzy_A	67	CRK-like protein, CRKL SH3C; SH3 domain, dimer, nu	99.65
2b86_A	67	Cytoplasmic protein NCK2; NCK SH3 domain, signalin	99.65
2dbm_A	73	SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH	99.65
2djq_A	68	SH3 domain containing ring finger 2; MUS musculus	99.65
2cre_A	71	HEF-like protein; SH3 domain, SRC homology 3 domai	99.65
2ed1_A	76	130 kDa phosphatidylinositol 4,5-biphosphate- depe	99.65
1uti_A	58	GRB2-related adaptor protein 2; signaling protein	99.65
2j6f_A	62	CD2-associated protein; metal-binding, immune resp	99.64
1jo8_A	58	ABP1P, actin binding protein; SH3 domain actin-bin	99.64
2dlp_A	85	KIAA1783 protein; SH3 domain, structural genomics,	99.64
2jte_A	64	CD2-associated protein; SH3 domain, coiled coil, c	99.64
2lcs_A	73	NAP1-binding protein 2; adaptor, transferase, sign	99.64
2yun_A	79	Nostrin; nitric oxide synthase trafficker, structu	99.64
2drm_A	58	Acanthamoeba myosin IB; SH3 domain, contractIle pr	99.64
1x69_A	79	Cortactin isoform A; SH3 domain, CTTN, oncogene EM	99.64
1zx6_A	58	YPR154WP; SH3 domain, protein binding; 1.60A {Sacc	99.64
1z9q_A	79	Neutrophil cytosol factor 4; oxidoreductase activa	99.64
1wyx_A	69	CRK-associated substrate; beta sheets, cell adhesi	99.64
2ydl_A	69	SH3 domain-containing kinase-binding protein 1; si	99.64
3ulr_B	65	SRC substrate cortactin; SH3, protein-protein inte	99.64
2ed0_A	78	ABL interactor 2; coiled coil, cytoskeleton, nucle	99.64
1x2p_A	68	Protein arginine N-methyltransferase 2; SH3 domain	99.63
1oot_A	60	Hypothetical 40.4 kDa protein in PES4-His2 interge	99.63
2ak5_A	64	RHO guanine nucleotide exchange factor 7; adaptor	99.63
2yuo_A	78	CIP85, RUN and TBC1 domain containing 3; structura	99.63
3thk_A	73	Spectrin alpha chain, brain; SH3 domain, chimera,	99.63
1ue9_A	80	Intersectin 2; beta barrel, SH3 domain, riken stru	99.63
1uhc_A	79	KIAA1010 protein; beta barrel, SH3, human cDNA, st	99.63
2dl3_A	68	Sorbin and SH3 domain-containing protein 1; ponsin	99.63
2eyx_A	67	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.63
1neg_A	83	Spectrin alpha chain, brain; SH3-domain fold, five	99.63
1uff_A	93	Intersectin 2; beta barrel, SH3 domain, endocytosi	99.63
2epd_A	76	RHO GTPase-activating protein 4; SH3 domain, struc	99.63
1u5s_A	71	Cytoplasmic protein NCK2; protein-protein complex,	99.63
1sem_A	58	SEM-5; SRC-homology 3 (SH3) domain, peptide-bindin	99.63
2fpf_A	71	C-JUN-amino-terminal kinase interacting protein 1;	99.63
3c0c_A	73	Endophilin-A2; endocytosis, SH3, voltage-gated cal	99.63
2ega_A	70	SH3 and PX domain-containing protein 2A; SH3 domai	99.63
2jt4_A	71	Cytoskeleton assembly control protein SLA1; endocy	99.63
1ugv_A	72	KIAA0621, olygophrenin-1 like protein; beta barrel	99.63
3cqt_A	79	P59-FYN, proto-oncogene tyrosine-protein kinase FY	99.63
2cub_A	88	Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor	99.63
2csi_A	76	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.63
4e6r_A	58	Cytoplasmic protein NCK2; SH3 domain, protein bind	99.63
2dm1_A	73	Protein VAV-2; RHO family guanine nucleotide excha	99.62
3ngp_A	62	Spectrin alpha chain, brain; beta barrel, structur	99.62
1y0m_A	61	1-phosphatidylinositol-4,5-bisphosphate phosphodie	99.62
2j05_A	65	RAS GTPase-activating protein 1; GTPase activation	99.62
2vwf_A	58	Growth factor receptor-bound protein 2; polymorphi	99.62
2pqh_A	80	Spectrin alpha chain, brain; SH3 domain, chimera,	99.62
1x43_A	81	Endophilin B1, SH3 domain GRB2-like protein B1; st	99.62
1gl5_A	67	Tyrosine-protein kinase TEC; transferase, ATP-bind	99.62
2dbk_A	88	CRK-like protein; structural genomics, NPPSFA, nat	99.62
2fpe_A	62	C-JUN-amino-terminal kinase interacting protein 1;	99.62
2dnu_A	71	RUH-061, SH3 multiple domains 1; RSGI, structural	99.62
1x2k_A	68	OSTF1, osteoclast stimulating factor 1; SH3 domain	99.62
1b07_A	65	Protein (proto-oncogene CRK (CRK)); SH3 domain, in	99.62
1x2q_A	88	Signal transducing adapter molecule 2; SH3 domain,	99.62
4glm_A	72	Dynamin-binding protein; SH3 domain, DNMBP, struct	99.62
3eg3_A	63	Proto-oncogene tyrosine-protein kinase ABL1; beta,	99.61
1j3t_A	74	Intersectin 2; beta barrel, SH3 domain, riken stru	99.61
2k9g_A	73	SH3 domain-containing kinase-binding protein 1; CI	99.61
2da9_A	70	SH3-domain kinase binding protein 1; structural ge	99.61
1wi7_A	68	SH3-domain kinase binding protein 1; beta barrel,	99.61
2x3w_D	60	Syndapin I, protein kinase C and casein kinase sub	99.61
1uhf_A	69	Intersectin 2; beta barrel, SH3 domain, riken stru	99.61
2ysq_A	81	RHO guanine nucleotide exchange factor 9; SH3 doma	99.61
2dil_A	69	Proline-serine-threonine phosphatase-interacting p	99.61
2a28_A	54	BZZ1 protein; SH3 domain, signaling protein; 1.07A	99.61
2gnc_A	60	SLIT-ROBO RHO GTPase-activating protein 1; beta ba	99.61
3u23_A	65	CD2-associated protein; structural genomics, struc	99.61
2ege_A	75	Uncharacterized protein KIAA1666; SH3 domain, KIAA	99.61
1cka_A	57	C-CRK N-terminal SH3 domain; complex (oncogene pro	99.61
2gqi_A	71	RAS GTPase-activating protein 1; GAP, RAS P21 prot	99.6
2iim_A	62	Proto-oncogene tyrosine-protein kinase LCK; beta-b	99.6
1wxt_A	68	Hypothetical protein FLJ21522; SH3 domain, EPS8-re	99.6
1nm7_A	69	Peroxisomal membrane protein PAS20; yeast, PEX5P,	99.6
1zlm_A	58	Osteoclast stimulating factor 1; beta barrel, sign	99.6
2ct4_A	70	CDC42-interacting protein 4; thyroid receptor inte	99.6
1tg0_A	68	BBC1 protein, myosin tail region-interacting prote	99.6
2csq_A	97	RIM-BP2, RIM binding protein 2; SH3 domain, struct	99.6
2jw4_A	72	Cytoplasmic protein NCK1; SH3 domain, phosphorylat	99.6
2ecz_A	70	Sorbin and SH3 domain-containing protein 1; glycop	99.6
2v1q_A	60	SLA1, cytoskeleton assembly control protein SLA1;	99.6
1csk_A	71	C-SRC SH3 domain; phosphotransferase; 2.50A {Homo	99.6
3rnj_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.6
1yn8_A	59	NBP2, NAP1-binding protein 2; SH3 domain, unknown	99.6
1uj0_A	62	Signal transducing adaptor molecule (SH3 domain an	99.6
4f14_A	64	Nebulette; SH3 domain, heart muscle, actin-binding	99.6
1ujy_A	76	RHO guanine nucleotide exchange factor 6; structur	99.59
2l0a_A	72	STAM-1, signal transducing adapter molecule 1; str	99.59
2dl5_A	78	KIAA0769 protein; SH3 domain, FCHSD2, structural g	99.59
2k2m_A	68	EPS8-like protein 1; alternative splicing, coiled	99.59
1s1n_A	68	Nephrocystin 1; beta barrel, cell adhesion; NMR {H	99.59
3h0h_A	73	Proto-oncogene tyrosine-protein kinase FYN; beta b	99.59
1ruw_A	69	Myosin-3 isoform, MYO3; SH3 domain, yeast, high-th	99.59
1wxb_A	68	Epidermal growth factor receptor pathway substrate	99.59
1zuu_A	58	BZZ1 protein; SH3 domain, unknown function; 0.97A	99.59
1w1f_A	65	Tyrosine-protein kinase LYN; SH3-domain, SH3 domai	99.59
2enm_A	77	Sorting nexin-9; SH3-like barrel, protein transpor	99.59
2yuq_A	85	Tyrosine-protein kinase ITK/TSK; T-cell-specific k	99.59
4esr_A	69	Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domai	99.58
1spk_A	72	RSGI RUH-010, riken cDNA 1300006M19; structural ge	99.58
2oaw_A	65	Spectrin alpha chain, brain; SH3 domain, chimera,	99.58
2o9s_A	67	Ponsin; SH3 domain, signaling protein; 0.83A {Homo	99.58
2cuc_A	70	SH3 domain containing ring finger 2; structural ge	99.58
2kxd_A	73	11-MER peptide, SH3 domain of spectrin alpha CHAI;	99.58
2ct3_A	70	Vinexin; SH3 domian, structural genomics, NPPSFA,	99.58
1wx6_A	91	Cytoplasmic protein NCK2; SH3 domain, structural g	99.58
2egc_A	75	SH3 and PX domain-containing protein 2A; SH3 domai	99.58
1zuy_A	58	Myosin-5 isoform; SH3 domain, contractIle protein;	99.58
1i07_A	60	Epidermal growth factor receptor kinase substrate	99.58
1i1j_A	108	Melanoma derived growth regulatory protein; SH3 su	99.58
4ag1_C	84	Fynomer; hydrolase-de novo protein complex, inhibi	99.58
2eqi_A	69	Phospholipase C, gamma 2; SH3 domain, PLCG2, struc	99.58
2o2o_A	92	SH3-domain kinase-binding protein 1; CIN85, protei	99.57
2kxc_A	67	Brain-specific angiogenesis inhibitor 1-associate	99.57
2d8j_A	77	FYN-related kinase; SH3 domain, structural genomic	99.57
2yup_A	90	Vinexin; sorbin and SH3 domain-containing protein	99.57
2d8h_A	80	SH3YL1 protein; SH3 domain, hypothetical protein S	99.57
1gbq_A	74	GRB2; complex (signal transduction/peptide), SH3 d	99.57
2ke9_A	83	Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosp	99.57
1x6b_A	79	RHO guanine exchange factor (GEF) 16; SH3 domain,	99.57
2v1r_A	80	Peroxisomal membrane protein PAS20; protein transp	99.56
1x6g_A	81	Megakaryocyte-associated tyrosine-protein kinase;	99.56
1jqq_A	92	PEX13P, peroxisomal membrane protein PAS20, PAS20P	99.56
1wie_A	96	RIM binding protein 2; beta barrel, KIAA0318 prote	99.55
2rf0_A	89	Mitogen-activated protein kinase kinase kinase 10;	99.55
1udl_A	98	Intersectin 2, KIAA1256; beta barrel, SH3 domain,	99.55
2oi3_A	86	Tyrosine-protein kinase HCK; human HCK, SH3, SRC-t	99.54
1aww_A	67	ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linke	99.54
2vkn_A	70	Protein SSU81; membrane, SH3 domain, transmembrane	99.54
2kgt_A	72	Tyrosine-protein kinase 6; SH3 domain, SRC kinase,	99.54
3reb_B	90	Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain	99.53
2rqv_A	108	BUD emergence protein 1; BEM1P, SH3, CDC42P, cytop	99.53
2cud_A	79	SRC-like-adapter; SH3 domain, negative mitogenesis	99.53
1wxu_A	93	Peroxisomal biogenesis factor 13; SH3 domain, PEX1	99.52
2e5k_A	94	Suppressor of T-cell receptor signaling 1; SH3 dom	99.52
2kbt_A	142	Chimera of proto-oncogene VAV, linker, immunoglobu	99.51
1hsq_A	71	Phospholipase C-gamma (SH3 domain); phosphoric die	99.51
2m0y_A	74	Dedicator of cytokinesis protein 1; apoptosis; NMR	99.5
2yt6_A	109	Adult MALE urinary bladder cDNA, riken FULL- lengt	99.49
2jxb_A	86	T-cell surface glycoprotein CD3 epsilon chain, cyt	99.48
3o5z_A	90	Phosphatidylinositol 3-kinase regulatory subunit;	99.48
2kym_A	120	BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI	99.47
2rqr_A	119	CED-12 homolog, engulfment and cell motility prote	99.46
3i5r_A	83	Phosphatidylinositol 3-kinase regulatory subunit a	99.46
1bb9_A	115	Amphiphysin 2; transferase, SH3 domain; 2.20A {Rat	99.45
1awj_A	77	ITK; transferase, regulatory intramolecular comple	99.44
1k1z_A	78	VAV; SH3, proto-oncogene, signaling protein; NMR {	99.42
1mv3_A	213	MYC box dependent interacting protein 1; tumor sup	99.4
1gcq_C	70	VAV proto-oncogene; SH3 domain, protein-protein co	99.39
3qwx_X	174	Cell death abnormality protein 2; cell engulfment,	99.38
3jv3_A	283	Intersectin-1; SH3 domain, DH domain, guanine nucl	99.38
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.37
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.37
2dvj_A	230	V-CRK sarcoma virus CT10 oncogene homolog, isoform	99.36
1u3o_A	82	Huntingtin-associated protein-interacting protein;	99.34
4d8k_A	175	Tyrosine-protein kinase LCK; protein kinases, SH2	99.34
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	99.33
1ng2_A	193	Neutrophil cytosolic factor 1; P47PHOX, autoinhibi	99.33
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.31
3a98_A	184	DOCK2, dedicator of cytokinesis protein 2; protein	99.31
1v1c_A	71	Obscurin; muscle, sarcomere, adapter, myogenesis,	99.3
2eyz_A	304	V-CRK sarcoma virus CT10 oncogene homolog isoform	99.28
1tuc_A	63	Alpha-spectrin; capping protein, calcium-binding,	99.28
2pz1_A	466	RHO guanine nucleotide exchange factor 4; helical	99.28
1gri_A	217	Growth factor bound protein 2; SH2, SH3, signal tr	99.25
1k9a_A	450	Carboxyl-terminal SRC kinase; COOH-terminal SRC ki	99.22
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.2
2de0_X	526	Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltran	99.19
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	99.18
2h8h_A	535	Proto-oncogene tyrosine-protein kinase SRC; SRC ki	99.18
1qcf_A	454	Haematopoetic cell kinase (HCK); tyrosine kinase-i	99.17
1fmk_A	452	C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyros	99.17
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.79
2lqn_A	303	CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT	98.7
3haj_A	486	Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR,	99.11
1opk_A	495	P150, C-ABL, proto-oncogene tyrosine-protein kinas	99.1
3qwy_A	308	Cell death abnormality protein 2; cell engulfment,	99.08
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	99.0
1ri9_A	102	FYN-binding protein; SH3-like, helically extended,	99.0
3pvl_A	655	Myosin VIIA isoform 1; protein complex, novel fold	98.95
1kjw_A	295	Postsynaptic density protein 95; protein-protein i	98.94
2gtj_A	96	FYN-binding protein; SH3, redox, signaling protein	98.88
1ug1_A	92	KIAA1010 protein; structural genomics, SH3 domain,	98.85
4dey_A	337	Voltage-dependent L-type calcium channel subunit;	98.76
3kfv_A	308	Tight junction protein ZO-3; structural genomics c	98.58
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	98.56
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	98.42
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	98.42
3pe0_A	283	Plectin; cytoskeleton, plakin, spectrin repeat, SH	98.38
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	98.36
3tvt_A	292	Disks large 1 tumor suppressor protein; DLG, SRC-h	98.22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	98.18
3r6n_A	450	Desmoplakin; spectrin repeat, SH3 domain, cell adh	97.81
2dyb_A	341	Neutrophil cytosol factor 4; P40(PHOX), NADPH oxid	97.68
2krs_A	74	Probable enterotoxin; all beta, SH3, ENTD, CPF_058	96.67
2kt8_A	76	Probable surface protein; SH3 family, structural g	96.57
2kq8_A	70	Cell WALL hydrolase; GFT protein structure, NESG,	95.99
1wfw_A	74	Kalirin-9A; SH3 domain, neuron-specific GDP/GTP ex	93.24
2jmc_A	77	Spectrin alpha chain, brain and P41 peptide chimer	92.72
1g2b_A	62	Spectrin alpha chain; capping protein, calcium-bin	90.31
3npf_A	306	Putative dipeptidyl-peptidase VI; structural genom	83.34

>2lx7_A GAS-7, growth arrest-specific protein 7; structural genomics, northeast structural genomics consortiu target HR8574A, PSI-biology; NMR {Homo sapiens}

Probab=99.75  E-value=1.4e-18  Score=103.88  Aligned_cols=57  Identities=25%  Similarity=0.568  Sum_probs=50.2

Q ss_pred             CCcceEEeeccCCCCCCC-CCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeec
Q psy7685          68 NNGAVYALYDYEANNTDE-LSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~e-Ls~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~  127 (137)
                      .+.+++|+|||.++.++| |+|++||+|.|+++.++   |||.|+ .+|++|+||+|||+.+
T Consensus         2 sg~~~rAlydy~~~~~~e~Ls~~~Gd~i~v~~~~~~---~Ww~g~~~~G~~G~fP~nyVe~i   60 (60)
T 2lx7_A            2 SGARCRTLYPFSGERHGQGLRFAAGELITLLQVPDG---GWWEGEKEDGLRGWFPASYVQLL   60 (60)
T ss_dssp             CSCEEEESCCCCSCCCSSCCCCCTTCEEEBSCCCTT---SCEEEECTTSCEEEECGGGEEEC
T ss_pred             CCCEEEECcccCCCCCCCCccCCCCCEEEEeEecCC---CeEEEEeCCCCEEEEcHHHEEEC
Confidence            457899999999998887 99999999999987643   599999 5789999999999975

>2i0n_A Class VII unconventional myosin; beta-sheet loop, structural protein; NMR {Dictyostelium discoideum}

Probab=99.71  E-value=4.8e-17  Score=102.31  Aligned_cols=63  Identities=30%  Similarity=0.473  Sum_probs=55.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ...+++|+|||.++..+||+|++||+|.|+++.+  +.|||.|+.+|+.|+||.+||+.+....+
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~--~~gWw~g~~~g~~G~fP~~yv~~~~~~~~   71 (80)
T 2i0n_A            9 FAKYARALKDYNVSDTSLLPFKRNDIITITFKDQ--ENKWFMGQLNGKEGSFPVDHVEILLSDVP   71 (80)
T ss_dssp             CCCEEEESSCBCCCSSSSCCBCSSEEEEEEEESS--SSSEEEEEETTEEEEEEGGGEEEESSCCC
T ss_pred             CCeEEEECCCCCcCCCCCcCCCCCCEEEEEEecC--CCCEEEEEECCcEEEechHHEEECCCCCC
Confidence            4567999999999999999999999999999864  33599999999999999999999976544

>2lj0_A Sorbin and SH3 domain-containing protein 1; R85FL, ponsin, CAP, signaling protein; NMR {Homo sapiens} PDB: 2lj1_A

Probab=99.70  E-value=5.5e-17  Score=98.44  Aligned_cols=56  Identities=29%  Similarity=0.476  Sum_probs=50.2

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~  127 (137)
                      ...++|+|||.++.++||+|++||+|.|+++.++   |||.|+  .+|+.|+||+|||+++
T Consensus         6 ~~~~~Alydy~a~~~~ELs~~~Gd~i~v~~~~~~---gWw~g~~~~~g~~G~~P~nyVe~l   63 (65)
T 2lj0_A            6 LFSYQALYSYIPQNDDELELRDGDIVDVMEKCDD---GWFVGTSRRTKQFGTFPGNYVKPL   63 (65)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECTT---SEEEEEETTTCCEEEEETTSEEEC
T ss_pred             CEEEEEceeECCCCcCCcCCCCCCEEEEeEeCCC---CEEEEEECCCCCEEEEehhHeEEE
Confidence            3468999999999999999999999999998644   599998  4799999999999987

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.70  E-value=5.3e-17  Score=119.39  Aligned_cols=129  Identities=53%  Similarity=1.041  Sum_probs=103.0

Q ss_pred             hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhhccccCCcccccchhhhhHhhhcccCCcceEEeeccCCCCCCC
Q psy7685           7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDE   85 (137)
Q Consensus         7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dy~~~~~~e   85 (137)
                      .|.|+..|+.+++++| +.|+++......+..|+...+.....++..+.+++................++|+|.+....+
T Consensus       107 L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~~~~al~d~~~~~~~e  186 (239)
T 1ycs_B          107 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALWDYEPQNDDE  186 (239)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGGEEEESSCBCCSSTTB
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccceEEEEeccCCCCCCc
Confidence            6899999999999999 999999888887777888877555566666666666655555555667789999999999999


Q ss_pred             CCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCCCCC
Q psy7685          86 LSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSAT  135 (137)
Q Consensus        86 Ls~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~~~  135 (137)
                      |.+++|+++.|+.+.+.+..+||+++.+|+.|+||.+||+.++..+|...
T Consensus       187 La~~~G~~i~vl~~~~~~~~~Ww~~~~~~~~G~~P~~yv~~~~~~~~~~~  236 (239)
T 1ycs_B          187 LPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYPRIKPRQR  236 (239)
T ss_dssp             CCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC-------
T ss_pred             ccccCCCEEEEEEecCCCCCCEEEEEECCcEEEeehHHeeECCcCCcccc
Confidence            99999999999988765555799999999999999999999987776543

>2nwm_A Vinexin; cell adhesion; NMR {Homo sapiens}

Probab=99.69  E-value=8.2e-17  Score=97.55  Aligned_cols=60  Identities=20%  Similarity=0.475  Sum_probs=52.2

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCCC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS  133 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~  133 (137)
                      .++|+|+|.++..++|+|++||+|.|+++.+   .|||.|+.+|+.|+||++||+.+....+.
T Consensus         3 ~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~fP~~yv~~~~~~~~~   62 (65)
T 2nwm_A            3 AARLKFDFQAQSPKELTLQKGDIVYIHKEVD---KNWLEGEHHGRLGIFPANYVEVLPLEHHH   62 (65)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCT---TTCEEEEETTEEEEECGGGEEECCCC---
T ss_pred             EEEEeeeECCCCcCccCCcCCCEEEEEEecC---CCEEEEEECCcEEEEehhhEEEcCCCCCC
Confidence            5899999999999999999999999998754   45999999999999999999998765443

>2dl7_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.68  E-value=2.4e-16  Score=97.34  Aligned_cols=64  Identities=33%  Similarity=0.540  Sum_probs=54.7

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      ....++|+|+|.++..+||+|++||+|.|+.+....+.|||.++.+|+.|+||.+||+.+...+
T Consensus         7 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~   70 (73)
T 2dl7_A            7 GVCFVKALYDYEGQTDDELSFPEGAIIRILNKENQDDDGFWEGEFNGRIGVFPSVLVEELSSGP   70 (73)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCCSSSSSCEEEEETTEEEEECSSSEEECCSSC
T ss_pred             CCEEEEECccCCcCCCCcCCCCCCCEEEEEECCCCCCCCcEEEEECCCEEEEChHHEEECCCCC
Confidence            3457899999999999999999999999998742124569999999999999999999986543

>2xmf_A Myosin 1E SH3; motor protein, SH3 domain; HET: DIA; 1.50A {Mus musculus}

Probab=99.67  E-value=2e-16  Score=94.05  Aligned_cols=58  Identities=34%  Similarity=0.695  Sum_probs=52.1

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      .....++|+|+|.++..++|+|++||+|.|+++.+   .|||.++.+|+.|+||++||+.+
T Consensus         3 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 2xmf_A            3 LGSPQCKALYAYDAQDTDELSFNANDIIDIIKEDP---SGWWTGRLRGKQGLFPNNYVTKI   60 (60)
T ss_dssp             SCSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECT---TSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCCcEEEECccCCcCCcCCcCCCCCCEEEEEEecC---CCEEEEEECCEEEEEcHHHEEEC
Confidence            34567999999999999999999999999999864   45999999999999999999874

>2dmo_A Neutrophil cytosol factor 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=3.6e-16  Score=95.33  Aligned_cols=60  Identities=27%  Similarity=0.479  Sum_probs=53.9

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.++..+||+|++||+|.|+++.+   .|||.++.+|+.|+||.+||+.++..
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dmo_A            6 SGEAHRVLFGFVPETKEELQVMPGNIVFVLKKGN---DNWATVMFNGQKGLVPCNYLEPVSGP   65 (68)
T ss_dssp             CSEEEEECSSCCCCSSSSCCCCTTCEEEECEECS---SSCEEEEETTEEEEECSTTEEECCCS
T ss_pred             CCCEEEECcCCCcCCcCCCCCCCCCEEEEEEeCC---CCEEEEEeCCCEEEeehHHeEECCCC
Confidence            4567999999999999999999999999999864   35999999999999999999998653

>2dl8_A SLIT-ROBO RHO GTPase-activating protein 2; SH3 domain, formin-binding protein 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=3e-16  Score=96.66  Aligned_cols=63  Identities=25%  Similarity=0.597  Sum_probs=55.6

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSA  134 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~~  134 (137)
                      ..+++|+|+|.++..++|+|++||+|.|+.+.++   +||.++.+|+.||||.+||+.+....|.+
T Consensus         9 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~---~Ww~g~~~g~~G~~P~~yv~~~~~~~p~s   71 (72)
T 2dl8_A            9 PIEAIAKFDYVGRTARELSFKKGASLLLYQRASD---DWWEGRHNGIDGLIPHQYIVVQDTSGPSS   71 (72)
T ss_dssp             CEEEEESSCBCCSSSSBCCBCTTCEEEEEEEEET---TEEEEEETTEEEEECSSSEEECCSSSCCC
T ss_pred             CEEEEECccCCcCCCCEeccCCCCEEEEEeecCC---CEEEEEECCEEEEEchHHeEEcCCCCCCC
Confidence            3568999999999999999999999999998643   59999999999999999999997766543

>2dl4_A Protein STAC; SH3 domain, STAC protein, SRC homology 3, cysteine-rich domain protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=3.7e-16  Score=95.25  Aligned_cols=61  Identities=21%  Similarity=0.621  Sum_probs=54.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      ....++|+|+|.++..+||+|++||+|.|+++.+   .+||.++.+|+.|+||.+||+.+....
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (68)
T 2dl4_A            6 SGNTYVALYKFVPQENEDLEMRPGDIITLLEDSN---EDWWKGKIQDRIGFFPANFVQRLSGPS   66 (68)
T ss_dssp             CCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCC---SSEEEEECSSCEEEEETTTEEECCCCC
T ss_pred             CCCEEEEeeeECCCCcCCcCCCCCCEEEEEEeCC---CCEEEEEECCcEEEEehHHeEECCCCC
Confidence            3457999999999999999999999999999753   459999999999999999999997643

>2ew3_A SH3-containing GRB2-like protein 3; SH3GL3, solution structure, signaling protein; NMR {Homo sapiens}

Probab=99.66  E-value=2.6e-16  Score=96.15  Aligned_cols=59  Identities=27%  Similarity=0.582  Sum_probs=52.7

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...++|+|||.++..+||+|++||+|.|+++.+   .|||.|+.+|+.||||++||+.+...
T Consensus         3 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~   61 (68)
T 2ew3_A            3 QPCCRGLYDFEPENQGELGFKEGDIITLTNQID---ENWYEGMIHGESGFFPINYVEVIVPL   61 (68)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEEESS---SSEEEEEETTEEEEEEGGGEEESCC-
T ss_pred             CCEEEEeeeECCCCCCccCCCCCCEEEEEEecC---CCEEEEEECCcEEEeeHHHEEEcCcc
Confidence            357899999999999999999999999999864   35999999999999999999998654

>2ebp_A SAM and SH3 domain-containing protein 1; proline-glutamate repeat-containing protein, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2kea_A

Probab=99.66  E-value=2.9e-16  Score=97.13  Aligned_cols=61  Identities=25%  Similarity=0.335  Sum_probs=53.5

Q ss_pred             CcceEEeeccCCC--CCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          69 NGAVYALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        69 ~~~~~al~dy~~~--~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ..+++|+|+|.+.  ..+||+|++||+|.|+++.+   .|||+|+.+|+.|+||++||+.+...++
T Consensus         9 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~---~gWw~g~~~g~~G~fP~~yv~~~~~~~~   71 (73)
T 2ebp_A            9 CGRARVHTDFTPSPYDTDSLKLKKGDIIDIISKPP---MGTWMGLLNNKVGTFKFIYVDVLSSGPS   71 (73)
T ss_dssp             SEEEEECSCBCCCTTCCSBCCBCSSCEEEEEECCS---SSCEEEECSSCEEEECSTTEEECCCCSC
T ss_pred             ceEEEEeeccCCCCCCCCccCCCCCCEEEEEEeCC---CCeEEEEECCCEEEEeHHHEEECCCCCC
Confidence            4578999999976  89999999999999999853   4599999999999999999999976443

>2ekh_A SH3 and PX domain-containing protein 2A; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.66  E-value=6.5e-16  Score=97.09  Aligned_cols=62  Identities=27%  Similarity=0.552  Sum_probs=54.8

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++.+   .|||+++.+|+.||||.+||+.+....+
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~---~gWw~g~~~g~~G~~P~~yv~~~~~~~~   68 (80)
T 2ekh_A            7 GATSYMTCSAYQKVQDSEISFPAGVEVQVLEKQE---SGWWYVRFGELEGWAPSHYLVLDENEQP   68 (80)
T ss_dssp             SCEEEEECSCBCCSSTTSCCBCTTCEEEEEEECT---TSEEEEEETTEEEEEETTTEECCCCCCC
T ss_pred             CCCEEEECCCCCCCCCCccCcCCCCEEEEEEeCC---CCeEEEEECCCEEEEEhHHeEECCCCCC
Confidence            4457999999999999999999999999999864   3599999999999999999999876443

>2g6f_X RHO guanine nucleotide exchange factor 7; SH3 domain, peptide interaction, signaling protein; HET: NCO; 0.92A {Rattus norvegicus} PDB: 2df6_A* 2p4r_A 2esw_A

Probab=99.66  E-value=3e-16  Score=93.01  Aligned_cols=57  Identities=32%  Similarity=0.613  Sum_probs=51.3

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      .+..++|+|+|.++..++|+|++||+|.|+++.+   .|||.++.+|+.|+||++||+.+
T Consensus         3 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~l   59 (59)
T 2g6f_X            3 LGSVVRAKFNFQQTNEDELSFSKGDVIHVTRVEE---GGWWEGTHNGRTGWFPSNYVREI   59 (59)
T ss_dssp             CCCEEEESSCBCCSSTTBCCBCTTCEEEEEEECT---TSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCcEEEECceeCCCCcCCcCCCCCCEEEEEEecC---CCEEEEEECCcEEEEeHHHEEEC
Confidence            3467999999999999999999999999998864   35999999999999999999875

>1w70_A Neutrophil cytosol factor 4; NADPH oxidase, P40PHOX, P47PHOX, SH3 domain, polyproline; 1.46A {Homo sapiens} PDB: 1w6x_A

Probab=99.66  E-value=3.2e-16  Score=93.22  Aligned_cols=57  Identities=25%  Similarity=0.532  Sum_probs=51.6

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      ...++|+|+|.++.+++|+|++||+|.|++..+   .|||.|+.+|+.|+||++||+.++
T Consensus         4 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~W~~g~~~g~~G~~P~~yv~~l~   60 (60)
T 1w70_A            4 HMRAEALFDFTGNSKLELNFKAGDVIFLLSRIN---KDWLEGTVRGATGIFPLSFVKILK   60 (60)
T ss_dssp             SCEEEESSCBCCSSTTBCCBCTTCEEEEEEECS---SSEEEEEETTEEEEEEGGGEEECC
T ss_pred             CcEEEECccCCcCCCCCccCCCCCEEEEEEeCC---CCeEEEEECCCEEEechHHEEECC
Confidence            457999999999999999999999999999864   459999999999999999999863

>2bz8_A SH3-domain kinase binding protein 1; SH3 domain, CIN85 adaptor protein, CBL ubiquitin ligase; 2.0A {Homo sapiens}

Probab=99.66  E-value=2.9e-16  Score=92.76  Aligned_cols=55  Identities=33%  Similarity=0.672  Sum_probs=50.5

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      .++|+|+|.++.+++|+|++||+|.|+++.+   .|||.|+.+|+.|+||++||+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 2bz8_A            3 EAIVEFDYQAQHDDELTISVGEIITNIRKED---GGWWEGQINGRRGLFPDNFVREIK   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCT---TTEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECcccCCCCcCEeeECCCCEEEEEEeCC---CCEEEEEECCeEEEEehHHeEEcC
Confidence            5899999999999999999999999999754   459999999999999999999875

>2fei_A CD2-associated protein; CMS SH3 domain, structural protein; NMR {Homo sapiens}

Probab=99.66  E-value=1.2e-16  Score=96.89  Aligned_cols=58  Identities=31%  Similarity=0.552  Sum_probs=51.9

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      .+++|+|+|.++..+||+|++||+|.|+++.+   .|||.|+.+|+.|+||++||+.+...
T Consensus         2 ~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~---~gWw~g~~~g~~G~fP~~yv~~~~~~   59 (65)
T 2fei_A            2 RQCKVLFEYIPQNEDELELKVGDIIDINEEVE---EGWWSGTLNNKLGLFPSNFVKELELE   59 (65)
T ss_dssp             CEEECSSCCCCCSTTBCCCCTTCEEECCCCSS---SSEEEEESSSCEEEEETTTSCBCCCC
T ss_pred             eEEEECccCCcCCcCccCCCCCCEEEEEEecC---CCEEEEEECCcEEEecHHHEEEcCCC
Confidence            36899999999999999999999999998753   46999999999999999999988643

>1k4u_S Phagocyte NADPH oxidase subunit P67PHOX; SH3-peptide complex, helix-turn-helix, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.65  E-value=1.7e-16  Score=94.98  Aligned_cols=58  Identities=31%  Similarity=0.565  Sum_probs=52.3

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      ....++|+|+|.+...++|+|++||+|.|+++.+   .|||.|+.+|+.|+||++||+.++
T Consensus         4 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~   61 (62)
T 1k4u_S            4 KGSQVEALFSYEATQPEDLEFQEGDIILVLSKVN---EEWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CCEEEECCSCBCCCSSSBCCBCSSCEEEEEEESS---SSCEEEECSSCEEEECGGGCCCSC
T ss_pred             CCeEEEECCCCCcCCCCCccCCCCCEEEEEEeCC---CCEEEEEECCcEEEEeHHHEEECC
Confidence            3457999999999999999999999999999854   359999999999999999998875

>2bzy_A CRK-like protein, CRKL SH3C; SH3 domain, dimer, nuclear export; 2.5A {Homo sapiens} PDB: 2bzx_A

Probab=99.65  E-value=3.1e-16  Score=95.37  Aligned_cols=59  Identities=17%  Similarity=0.329  Sum_probs=52.5

Q ss_pred             ceEEeeccCCC--CCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          71 AVYALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        71 ~~~al~dy~~~--~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      +++|+|+|.++  ..++|+|++||+|.|+.+.+   .|||.|+.+|+.|+||++||+.+....+
T Consensus         3 ~~~al~dy~~~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~fP~~yv~~~~~~~~   63 (67)
T 2bzy_A            3 FAKAIQKRVPCAYDKTALALEVGDIVKVTRMNI---NGQWEGEVNGRKGLFPFTHVKIFDPQNP   63 (67)
T ss_dssp             EEEECSCBCSEEECTTBCCBCTTCEEEEEEECS---SSEEEEEETTEEEEEEGGGEEECCSCC-
T ss_pred             EEEEeeeECCCCCCCCccccCCCCEEEEEEecC---CCeEEEEeCCcEEEEehHHeEECCCcCc
Confidence            58999999998  99999999999999999864   4599999999999999999999976544

>2b86_A Cytoplasmic protein NCK2; NCK SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2js2_A

Probab=99.65  E-value=2.3e-16  Score=96.18  Aligned_cols=60  Identities=30%  Similarity=0.559  Sum_probs=50.1

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ...++|+|||.++..+||+|++||+|.|+++.    .|||.++ .+|+.|+||++||+.+++..+
T Consensus         4 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~----~~Ww~~~~~~g~~G~~Psnyv~~~~~~~~   64 (67)
T 2b86_A            4 EVIVIAKWDYTAQQDQELDIKKNERLWLLDDS----KTWWRVRNAANRTGYVPSNYVERKLEHHH   64 (67)
T ss_dssp             CEEEEESSCBCCSSTTSCCBCTTCEEEEEECS----SSSCEEECTTSCEEECCCCSEEEC-----
T ss_pred             CeEEEEeeeECCCCCCccccCCCCEEEEEecC----CCeEEEEeCCCCEEEeChHHEeEcCCCCC
Confidence            35689999999999999999999999999873    3699999 789999999999999876543

>2dbm_A SH3-containing GRB2-like protein 2; EC 2.3.1.-, SH3 domain protein 2A, endophilin 1, EEN-B1, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2knb_B 3iql_A

Probab=99.65  E-value=7.3e-16  Score=95.14  Aligned_cols=62  Identities=29%  Similarity=0.574  Sum_probs=54.7

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ...+++|+|+|.++..++|+|++||+|.|+.+.+   .+||.++.+|+.||||.+||+.+...+.
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   67 (73)
T 2dbm_A            6 SGPCCRALYDFEPENEGELGFKEGDIITLTNQID---ENWYEGMLHGHSGFFPINYVEILVALPH   67 (73)
T ss_dssp             CCCEEEESSCBCCCSTTCCCBCTTCEEECCBCSS---SSEEEEEETTEEEEEESSSEEESSCCSC
T ss_pred             CCCEEEEccccCCCCCCCccCCCCCEEEEEEecC---CCEEEEEECCCEEEechHHEEEccCCCC
Confidence            3457999999999999999999999999998754   3599999999999999999999976543

>2djq_A SH3 domain containing ring finger 2; MUS musculus 0 DAY neonate head cDNA, riken FULL-length enriched library, clone:4831401O22, structural genomics; NMR {Mus musculus}

Probab=99.65  E-value=9.7e-16  Score=93.28  Aligned_cols=60  Identities=23%  Similarity=0.507  Sum_probs=53.4

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.+...++|+|++||+|.|+++.+   .+||.++.+|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2djq_A            6 SGPRAKALCNYRGKNPGDLKFNKGDVILLRRQLD---ENWYQGEINGVSGIFPASSVEVISGP   65 (68)
T ss_dssp             SCCEEEECSCCCSCCTTCCCCCTTCEEEEEECCC---SSEEEEEETTEEEEEESSSEETTCSC
T ss_pred             CceEEEECCCCCCCCcCCccCCCCCEEEEEEecC---CCEEEEEECCcEEEeehHHEEEcCCC
Confidence            3457999999999999999999999999998754   45999999999999999999988653

>2cre_A HEF-like protein; SH3 domain, SRC homology 3 domain, beta barrel, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=5e-16  Score=95.23  Aligned_cols=63  Identities=27%  Similarity=0.519  Sum_probs=54.3

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++....+.|||.++.+|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (71)
T 2cre_A            6 SGLLARALYDNCPDCSDELAFSRGDILTILEQHVPESEGWWKCLLHGRQGLAPANRLQILSGP   68 (71)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCCEEEEESCCTTSTTEEEEESSSCCEEEETTTEEECCCS
T ss_pred             CcEEEEECcccCcCCCCCCCCCCCCEEEEeEcCCCCCCCcEEEEECCCEEEEehHHEEECCCC
Confidence            345799999999999999999999999999985222346999999999999999999998654

>2ed1_A 130 kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; GTPase activation, membrane, metal-binding, SH3 domain; NMR {Homo sapiens} PDB: 2rqt_A 2rqu_A

Probab=99.65  E-value=3.6e-16  Score=97.31  Aligned_cols=63  Identities=35%  Similarity=0.702  Sum_probs=54.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCC---eeEEEcCCCeeecCCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN---KEGYVPRNLLGLYPRVQPS  133 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g---~~G~~P~~yv~~~~~~~~~  133 (137)
                      ...+++|+|+|.++..+||+|++||+|.|+++.+   .|||.++..+   +.|+||.+||+.+....|.
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~~~~g~~G~~P~~yv~~~~~~~p~   74 (76)
T 2ed1_A            9 KVRRVKTIYDCQADNDDELTFIEGEVIIVTGEED---QEWWIGHIEGQPERKGVFPVSFVHILSDSGPS   74 (76)
T ss_dssp             CCEEEEESSCCCCSSSSBCCCCSSCEEEESSCCS---SSEEEEEETTCTTCEEEEEGGGEEECCCCCCS
T ss_pred             CCeEEEECccCCCCCcCCcCcCCCCEEEEEEecC---CCEEEEEECCCCCCEEEEehHHeEECCCCCCC
Confidence            4567999999999999999999999999998653   4599999655   9999999999999876554

>1uti_A GRB2-related adaptor protein 2; signaling protein regulator, SH3 domain/complex, adaptor protein (MONA); 1.5A {Mus musculus} SCOP: b.34.2.1 PDB: 1h3h_A 1oeb_A 2w10_A 2d0n_A

Probab=99.65  E-value=4.7e-16  Score=91.83  Aligned_cols=55  Identities=40%  Similarity=0.718  Sum_probs=50.3

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      .++|+|+|.++.+++|+|++||+|.|++..+   .|||.|+.+|+.|+||++||+.+.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~   57 (58)
T 1uti_A            3 WARALYDFEALEEDELGFRSGEVVEVLDSSN---PSWWTGRLHNKLGLFPANYVAPMM   57 (58)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCcCCCCCCCCCEEEEEEECC---CCEEEEEECCeEEEeeHHHeEEcc
Confidence            5899999999999999999999999998753   469999999999999999999874

>2j6f_A CD2-associated protein; metal-binding, immune response, SH3, SH2 domain, SH3 zinc-finger, SH3- binding, UBL conjugation pathway; 1.7A {Homo sapiens} PDB: 2j6k_A 2j6o_A 2j7i_A 2krm_A

Probab=99.64  E-value=4.9e-16  Score=93.00  Aligned_cols=57  Identities=33%  Similarity=0.562  Sum_probs=50.7

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      +++|+|+|.++..++|+|++||+|.|+.+..  +.|||.|+.+|+.|+||.+||+.++.
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~--~~~Ww~g~~~g~~G~~P~~yv~~~~~   59 (62)
T 2j6f_A            3 DYIVEYDYDAVHDDELTIRVGEIIRNVKKLQ--EEGWLEGELNGRRGMFPDNFVKEIKR   59 (62)
T ss_dssp             CEEECSCBCCSSTTBCCBCTTCEEEEEEECS--STTEEEEEETTEEEEEEGGGEEECC-
T ss_pred             EEEECccCCcCCcCCcCCcCCCEEEEEEecC--CCCEEEEEECCcEEEechHHEEECCC
Confidence            5899999999999999999999999998822  34699999999999999999999864

>1jo8_A ABP1P, actin binding protein; SH3 domain actin-binding-protein, structural protein; 1.30A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 2k3b_A 2rpn_A

Probab=99.64  E-value=4.6e-16  Score=91.90  Aligned_cols=54  Identities=33%  Similarity=0.633  Sum_probs=49.0

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC--CeeEEEcCCCeeec
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLY  127 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~--g~~G~~P~~yv~~~  127 (137)
                      +++|+|+|.++..++|+|++||+|.|+++.+   .|||.|+..  |+.|+||++||+.+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~~g~~G~~P~~yv~~~   57 (58)
T 1jo8_A            2 WATAEYDYDAAEDNELTFVENDKIINIEFVD---DDWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CEEESSCBCCCSTTBCCBCTTCEEEEEECCS---SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             EEEECceECCCCCCCcccCCCCEEEEEEecC---CCcEEEEECCCCCEEEechHHeEEC
Confidence            5899999999999999999999999999754   459999965  99999999999876

>2dlp_A KIAA1783 protein; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=7.4e-16  Score=97.86  Aligned_cols=62  Identities=26%  Similarity=0.427  Sum_probs=53.4

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.++..++|+|++||+|.|+.+.. .+.|||.|+.+|+.|+||.+||+.+...
T Consensus         7 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~-~~~~Ww~g~~~g~~G~fP~~yv~~~~~~   68 (85)
T 2dlp_A            7 GSGYVIALRSYITDNCSLLSFHRGDLIKLLPVAT-LEPGWQFGSAGGRSGLFPADIVQPAAAP   68 (85)
T ss_dssp             CCCEEEESSCBCCSSSSBCCBCTTCEEEECCCSC-CCTTEEEEESSSCEEEEETTSEEECCCS
T ss_pred             CCEEEEECCCCCccCcCCccCcCCCEEEEEEccC-CCCCeEEEEECCEEEEechHHeEECCCc
Confidence            4457999999999999999999999999998611 1346999999999999999999998654

>2jte_A CD2-associated protein; SH3 domain, coiled coil, cytoplasm, phosphorylation, SH3-binding, signaling protein; NMR {Mus musculus} PDB: 2kro_A

Probab=99.64  E-value=5.6e-16  Score=93.23  Aligned_cols=60  Identities=35%  Similarity=0.637  Sum_probs=52.3

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      ...+++|+|+|.++..++|+|++||+|.|+++.. .+.|||.|+.+|+.|+||++||+.++
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~-~~~~W~~g~~~g~~G~~P~~yv~~l~   64 (64)
T 2jte_A            5 AKEYCRTLFPYTGTNEDELTFREGEIIHLISKET-GEAGWWKGELNGKEGVFPDNFAVQIS   64 (64)
T ss_dssp             SSEEEEESSCBCCSSSSBCCBCTTCEEEEEESCS-SSTTEEEEEETTEEEEEEGGGEEECC
T ss_pred             CCEEEEECccCCccCCCccCCCCCCEEEEEECCC-CCCCEEEEEECCeEEEEeHHHEEECc
Confidence            3457899999999999999999999999998742 13469999999999999999999874

>2lcs_A NAP1-binding protein 2; adaptor, transferase, signaling protein; NMR {Saccharomyces cerevisiae}

Probab=99.64  E-value=6.7e-16  Score=95.52  Aligned_cols=62  Identities=26%  Similarity=0.490  Sum_probs=53.1

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCCCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRVQPS  133 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~~~~  133 (137)
                      ..+++|+|||.++..+||+|++||+|.|+++.++   |||.|+.  +|+.||||.+||+.+....+.
T Consensus         5 ~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~~~~---gWw~g~~~~~g~~G~~P~~yv~~~~~~~~~   68 (73)
T 2lcs_A            5 NQRAVALYDFEPENDNELRLAEGDIVFISYKHGQ---GWLVAENESGSKTGLVPEEFVSYIQPELEH   68 (73)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEETT---TEEEEECTTSSCEEEEESTTEEECCSSCC-
T ss_pred             CCEEEECccCCCCCCCccCCcCCCEEEEEEEcCC---CEEEEEECCCCCEEEeeHHHEEECCCCCCC
Confidence            4579999999999999999999999999998643   5999995  489999999999998654433

>2yun_A Nostrin; nitric oxide synthase trafficker, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=8.4e-16  Score=96.22  Aligned_cols=62  Identities=29%  Similarity=0.633  Sum_probs=54.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      .+..++|+|+|.+...++|+|++||+|.|+++.+   .+||.++.+|+.||||.+||+.+.....
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   67 (79)
T 2yun_A            6 SGRLCKALYSFQARQDDELNLEKGDIVIIHEKKE---EGWWFGSLNGKKGHFPAAYVEELPSNAG   67 (79)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCS---SSCEEEESSSCEEEECSTTEEEESSCSS
T ss_pred             CCCEEEECccCCcCCCCCcCCCCCCEEEEEEcCC---CCEEEEEECCCEEEEEhHHeEECCCCCC
Confidence            3567999999999999999999999999998754   3599999999999999999999976433

>2drm_A Acanthamoeba myosin IB; SH3 domain, contractIle protein; 1.35A {Acanthamoeba} PDB: 2drk_A

Probab=99.64  E-value=5.8e-16  Score=91.35  Aligned_cols=56  Identities=46%  Similarity=0.787  Sum_probs=50.6

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      +..++|+|+|.++..++|+|++||+|.|+.+.+   .|||.++.+|+.|+||.+||+.+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~W~~g~~~g~~G~~P~~yv~~l   58 (58)
T 2drm_A            3 GIQVKALYDYDAQTGDELTFKEGDTIIVHQKDP---AGWWEGELNGKRGWVPANYVQDI   58 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCT---TSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CcEEEECccCCCCCcCCcCCCCCCEEEEEEecC---CCEEEEEECCcEEEEeHHHEEEC
Confidence            456899999999999999999999999998853   45999999999999999999864

>1x69_A Cortactin isoform A; SH3 domain, CTTN, oncogene EMS1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=95.54  Aligned_cols=62  Identities=29%  Similarity=0.487  Sum_probs=54.8

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ....++|+|+|.++..++|+|++||+|.|+.+.+   .+||+++.+|+.||||.+||+.+...++
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~p~   77 (79)
T 1x69_A           16 LGITAVALYDYQAAGDDEISFDPDDIITNIEMID---DGWWRGVCKGRYGLFPANYVELRQSGPS   77 (79)
T ss_dssp             CCCCEEESSCCCCSSSSBCCCCTTCEEEEEEECS---SSEEEEEETTEEEEEETTSEEECCCCCS
T ss_pred             CCeEEEECccCCCCCCCCcCcCCCCEEEEeEecC---CCeEEEEECCcEEEechHHEEECCCCCC
Confidence            4457999999999999999999999999998864   3599999999999999999999876543

>1zx6_A YPR154WP; SH3 domain, protein binding; 1.60A {Saccharomyces cerevisiae} PDB: 1ynz_A

Probab=99.64  E-value=6.8e-16  Score=91.16  Aligned_cols=55  Identities=27%  Similarity=0.512  Sum_probs=50.2

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ..++|+|+|.++.+++|+|++||+|.|+++.+   .|||.++.+|+.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1zx6_A            3 EYVEALYQFDPQQDGDLGLKPGDKVQLLEKLS---PEWYKGSCNGRTGIFPANYVKPA   57 (58)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEEECS---SSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCCCCccCCCCCEEEEEEecC---CCEEEEEECCcEEEeeHHHEEEc
Confidence            46899999999999999999999999998864   45999999999999999999875

>1z9q_A Neutrophil cytosol factor 4; oxidoreductase activator; NMR {Homo sapiens}

Probab=99.64  E-value=3e-16  Score=98.65  Aligned_cols=62  Identities=23%  Similarity=0.503  Sum_probs=55.2

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      .....++|+|+|.++..+||+|++||+|.|+.+.+   .|||.|+.+|+.|+||++||+.+...+
T Consensus        16 ~~~~~~~Alydy~a~~~~eLsf~~Gd~I~Vl~~~~---~gWw~g~~~g~~G~fP~nyV~~~~~~p   77 (79)
T 1z9q_A           16 MAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRIN---KDWLEGTVRGATGIFPLSFVKILKDFP   77 (79)
T ss_dssp             SSCCCEEESSCCCCSSTTBCCCCTTCCBCCCEESS---SSEEEEEETTEEEEEEGGGEEESSCCC
T ss_pred             CCceEEEEcCccCCCCCCcccccCCCEEEEeEecC---CCEEEEEECCeEEEecHHHEEECCCCC
Confidence            45567999999999999999999999999999864   459999999999999999999997643

>1wyx_A CRK-associated substrate; beta sheets, cell adhesion; 1.14A {Homo sapiens}

Probab=99.64  E-value=2e-16  Score=96.60  Aligned_cols=61  Identities=34%  Similarity=0.631  Sum_probs=52.6

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ..++|+|+|.++..+||+|++||+|.|+.+....+.|||.|+.+|+.||||++||+.+...
T Consensus         4 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   64 (69)
T 1wyx_A            4 VLAKALYDNVAESPDELSFRKGDIMTVLEQDTQGLDGWWLCSLHGRQGIVPGNRLKILVGM   64 (69)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEETTGGGCTTEEEEEETTEEEEEEGGGEEEEEEE
T ss_pred             EEEEECccCCcCCCCccCCcCCCEEEEeECCCCCCCCcEEEEECCcEEEechhhEEECCCC
Confidence            4689999999999999999999999999875211245999999999999999999988653

>2ydl_A SH3 domain-containing kinase-binding protein 1; signaling protein; 2.05A {Homo sapiens} PDB: 2k6d_A

Probab=99.64  E-value=7.1e-16  Score=94.46  Aligned_cols=59  Identities=32%  Similarity=0.674  Sum_probs=52.0

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ..++|+|||.++..+||+|++||+|.|+.+... +.|||.|+.+|+.|+||++||+.+..
T Consensus         3 ~~~~Alydy~a~~~~eLs~~~Gd~i~vl~~~~~-~~gWw~g~~~g~~G~~P~~yV~~~~~   61 (69)
T 2ydl_A            3 DYCKVIFPYEAQNDDELTIKEGDIVTLINKDCI-DVGWWEGELNGRRGVFPDNFVKLLPP   61 (69)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEESCCS-STTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             cEEEEcccCCCCCCCccccCCCCEEEEEEcCCC-CCCEEEEEECCcEEEecHHHEEECCC
Confidence            468999999999999999999999999987411 34699999999999999999999864

>3ulr_B SRC substrate cortactin; SH3, protein-protein interaction, hydrolase, protein binding; 1.65A {Mus musculus} SCOP: b.34.2.0 PDB: 2d1x_A

Probab=99.64  E-value=8.3e-16  Score=92.61  Aligned_cols=57  Identities=32%  Similarity=0.553  Sum_probs=51.6

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++.+   .|||.++.+|+.|+||++||+.+
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~   64 (65)
T 3ulr_B            8 LGITAIALYDYQAAGDDEISFDPDDIITNIEMID---DGWWRGVCKGRYGLFPANYVELR   64 (65)
T ss_dssp             CCSCEEECSCBCCCSTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CceEEEEEeeECCCCcCEeeEecCCEEEEEEecC---CCEEEEEECCcEEEEehHHeEEC
Confidence            4457999999999999999999999999998864   35999999999999999999986

>2ed0_A ABL interactor 2; coiled coil, cytoskeleton, nuclear protein, phosphorylation, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.64  E-value=1.2e-15  Score=95.47  Aligned_cols=59  Identities=34%  Similarity=0.592  Sum_probs=53.0

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ..+++|+|+|.++..+||+|++||+|.|+++.+   .|||.++.+|+.||||.+||+.+...
T Consensus        17 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~---~gWw~g~~~g~~G~~P~~yv~~~~~~   75 (78)
T 2ed0_A           17 LEKVVAIYDYTKDKEDELSFQEGAIIYVIKKND---DGWYEGVMNGVTGLFPGNYVESISGP   75 (78)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCSSCEEEEEEECS---SSEEEEEETTEEEEEETTSEEECSSS
T ss_pred             CEEEEECccCCccCcCcccccCCCEEEEEEeCC---CCEEEEEECCcEEEeChHHEEEcCCC
Confidence            346899999999999999999999999999864   35999999999999999999998653

>1x2p_A Protein arginine N-methyltransferase 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=1e-15  Score=93.20  Aligned_cols=60  Identities=33%  Similarity=0.697  Sum_probs=53.4

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++.+   .+||.++.+|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1x2p_A            6 SGEEFVAIADYAATDETQLSFLRGEKILILRQTT---ADWWWGERAGCCGYIPANHVGKHSGP   65 (68)
T ss_dssp             SCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCS---SSEEEEECTTCCEEEESSSEECCCCS
T ss_pred             CCCEEEECceECCCCcCCcCCCCCCEEEEEEcCC---CCEEEEEECCeEEEEehHHeEECCCC
Confidence            3457999999999999999999999999999864   45999999999999999999988653

>1oot_A Hypothetical 40.4 kDa protein in PES4-His2 intergenic region; SH3 domain, sturctural genomics, structural genomics; 1.39A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1ssh_A 2a08_A

Probab=99.63  E-value=7.8e-16  Score=91.45  Aligned_cols=58  Identities=31%  Similarity=0.777  Sum_probs=51.0

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ..+++|+|+|.++..++|+|++||+|.|+++.+. +.|||.++.+|+.|+||++||+.+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-~~~Ww~g~~~g~~G~~P~~yv~~l   60 (60)
T 1oot_A            3 SPKAVALYSFAGEESGDLPFRKGDVITILKKSDS-QNDWWTGRVNGREGIFPANYVELV   60 (60)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCSC-TTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             ccEEEECccCCcCCcCEeeEcCCCEEEEEEeCCC-CCCeEEEEECCEEEEEeHHHEEEC
Confidence            3578999999999999999999999999987521 346999999999999999999864

>2ak5_A RHO guanine nucleotide exchange factor 7; adaptor proteins, CIN85, PIX/COOL, protein-protein interaction, X-RAY, endocytosis; 1.85A {Rattus norvegicus} PDB: 1zsg_A

Probab=99.63  E-value=9.8e-16  Score=92.14  Aligned_cols=58  Identities=31%  Similarity=0.585  Sum_probs=52.2

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ...++|+|+|.+...++|+|++||+|.|+.+.+   .|||.++.+|+.||||.+||+.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~   63 (64)
T 2ak5_A            6 QLVVRAKFNFQQTNEDELSFSKGDVIHVTRVEE---GGWWEGTHNGRTGWFPSNYVREIKP   63 (64)
T ss_dssp             CCEEEESSCBCCCSTTBCCBCTTCEEEEEECCT---TSEEEEEETTEEEEEEGGGEEECCC
T ss_pred             CEEEEEccccCCcCcCcccCCCCCEEEEeEecC---CCEEEEEECCCEEEEehHHeEEcCC
Confidence            456899999999999999999999999998754   4599999999999999999998854

>2yuo_A CIP85, RUN and TBC1 domain containing 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.63  E-value=1.2e-15  Score=95.34  Aligned_cols=60  Identities=25%  Similarity=0.554  Sum_probs=53.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.++..++|+|++||+|.|+.+.+   .+||.++.+|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (78)
T 2yuo_A            6 SGRRAKALLDFERHDDDELGFRKNDIITIISQKD---EHCWVGELNGLRGWFPAKFVEVLDER   65 (78)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEEECCC
T ss_pred             CceEEEECccCCCCCCCCccCCCCCEEEEEEecC---CCEEEEEECCCEEEEehHHEEECCCc
Confidence            4567999999999999999999999999998754   35999999999999999999998653

>3thk_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.70A {Rattus norvegicus} SCOP: b.34.2.1

Probab=99.63  E-value=8.8e-16  Score=94.60  Aligned_cols=61  Identities=28%  Similarity=0.690  Sum_probs=52.7

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ...++|+|||.++..++|+|++||+|.|+++.+   .+||.++.+|+.||||.+||+.+....+
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   65 (73)
T 3thk_A            5 KELVLALYDYQEKSPREVTMKKGDILTLLNSTN---KDWWKVEVNDRQGFVPAAYVKKLDPAQS   65 (73)
T ss_dssp             CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEECCC---
T ss_pred             CEEEEECcCCCcCCCCccCCCCCCEEEEEECCC---CCeEEEEECCcEEEEehHHeEECCCCCC
Confidence            356899999999999999999999999999864   3599999999999999999999875433

>1ue9_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.63  E-value=2e-15  Score=94.66  Aligned_cols=64  Identities=23%  Similarity=0.520  Sum_probs=54.0

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC-----CeeEEEcCCCeeecCCCCCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-----NKEGYVPRNLLGLYPRVQPSAT  135 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-----g~~G~~P~~yv~~~~~~~~~~~  135 (137)
                      ...++|+|+|.++..++|+|++||+|.|+++.+   .|||.++..     ++.||||.+||+.+........
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~gWw~g~~~~~g~~~~~G~fP~~yv~~~~~~~~~~~   75 (80)
T 1ue9_A            7 GEIAQVTSAYVASGSEQLSLAPGQLILILKKNT---SGWWQGELQARGKKRQKGWFPASHVKLLGPSSERAS   75 (80)
T ss_dssp             CEEEEECSCCCCCSTTBCCCCTTCEEEEEEECS---SSEEEEEECSCCSSCCEEEEETTSEEECCSCCSSCC
T ss_pred             CeEEEECcccCCCCCCCCCCCCCCEEEEEEecC---CCcEEEEECCCCCCCcEEEEchHHeEECCCCCCCCC
Confidence            456899999999999999999999999999864   359999954     4899999999999976544433

>1uhc_A KIAA1010 protein; beta barrel, SH3, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.63  E-value=9.5e-16  Score=96.02  Aligned_cols=63  Identities=32%  Similarity=0.629  Sum_probs=54.1

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCC-CCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDE-NEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~-~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|+|.++..+||+|++||+|.|+.+.+. .+.+||+++.+|+.||||.+||+.+...
T Consensus        12 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~~~~~~~Ww~g~~~g~~G~~P~~yv~~~~~~   75 (79)
T 1uhc_A           12 GNQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             SSCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CCeEEEECccCCCCCCCccCCCCCCEEEEEECCCCCCCCCeEEEEeCCCEEEEchHHeEECCCC
Confidence            34579999999999999999999999999997541 1246999999999999999999998653

>2dl3_A Sorbin and SH3 domain-containing protein 1; ponsin, C-CBL-associated protein, CAP, SH3 domain protein 5 SH3P12, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dlm_A

Probab=99.63  E-value=1.4e-15  Score=92.56  Aligned_cols=60  Identities=20%  Similarity=0.494  Sum_probs=53.3

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++.+   .+||.++.+|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~W~~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 2dl3_A            6 SGRPARAKFDFKAQTLKELPLQKGDIVYIYKQID---QNWYEGEHHGRVGIFPRTYIELLSGP   65 (68)
T ss_dssp             CSEEEEESSCBCCSSTTBCCBCTTCEEEEEECCS---TTEEEEECSSCEEEEETTTEEECCSC
T ss_pred             CCcEEEECccCCCCCcCCccCCCCCEEEEeEecC---CCEEEEEECCCEEEEchHHEEECCCC
Confidence            4557999999999999999999999999998754   35999999999999999999998653

>2eyx_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH3, signaling protein; NMR {Homo sapiens}

Probab=99.63  E-value=6.4e-16  Score=93.97  Aligned_cols=57  Identities=19%  Similarity=0.244  Sum_probs=51.3

Q ss_pred             cceEEeeccCCC--CCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~--~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      .+++|+|+|.++  ..++|+|++||+|.|+.+.+   .|||.|+.+|+.|+||++||+.+..
T Consensus         7 ~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~---~gWw~g~~~g~~G~fP~~yv~~~~~   65 (67)
T 2eyx_A            7 IYARVIQKRVPNAYDKTALALEVGELVKVTKINV---SGQWEGECNGKRGHFPFTHVRLLDQ   65 (67)
T ss_dssp             CBEEECCCBCCCTTCSSBCCBCSSEEEEEEEECT---TSEEEEEETTEEEEEEGGGBCCBCS
T ss_pred             EEEEEeEEECCCCCCCCccccCCCCEEEEEEecC---CCEEEEEECCCEEEEehHhEEEcCC
Confidence            468999999998  88899999999999998864   4599999999999999999998754

>1neg_A Spectrin alpha chain, brain; SH3-domain fold, five antiparallel beta sheets, structural protein; 2.30A {Gallus gallus} SCOP: b.34.2.1

Probab=99.63  E-value=1.1e-15  Score=96.89  Aligned_cols=62  Identities=26%  Similarity=0.650  Sum_probs=53.8

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      .....++|+|||.++..+||+|++||+|.|+...+   .|||.|+.+|+.||||++||+.+....
T Consensus        15 ~~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~---~gWw~g~~~g~~G~~P~~yv~~~~~~~   76 (83)
T 1neg_A           15 TGKELVLALYDYQEKSPREVTMKKGDILTLLNSTN---KDWWKVEVNDRQGFVPAAYVKKLAAAW   76 (83)
T ss_dssp             --CCEEEESSCBCCSSTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEECCTTS
T ss_pred             CCceEEEEccccCCCCCCccccCCCCEEEEEEecC---CCEEEEEECCeEEEEEHHHEEECCCCC
Confidence            34567999999999999999999999999998854   359999999999999999999986543

>1uff_A Intersectin 2; beta barrel, SH3 domain, endocytosis, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.63  E-value=1.5e-15  Score=97.97  Aligned_cols=62  Identities=32%  Similarity=0.566  Sum_probs=53.6

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|||.++..+||+|++||+|.|+.+.. ++.|||+|+.+|+.||||.+||+.+...
T Consensus         4 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~v~~~~~-~~~gWw~g~~~g~~G~~P~~yv~~~~~~   65 (93)
T 1uff_A            4 GSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTV-GEPGWLYGSFQGNFGWFPCNYVEKMPSS   65 (93)
T ss_dssp             SCCCEEESSCBCCCSSSCCCBCTTCEEEECSSCC-CSSSEEEEEETTEEEEEETTTEEECCSS
T ss_pred             CCEEEEECccCCCCCCCCcCCCCCCEEEEeEccC-CCCCEEEEEECCCEEEechHHeEEcCCc
Confidence            3457999999999999999999999999998742 1346999999999999999999998643

>2epd_A RHO GTPase-activating protein 4; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=6.5e-16  Score=96.16  Aligned_cols=61  Identities=21%  Similarity=0.531  Sum_probs=54.2

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ..+++|+|+|.++..++|+|++||+|.|+++.++   +||+++.+|+.||||.+||+.+....+
T Consensus        10 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~---~Ww~g~~~g~~G~~P~~yv~~~~~~~~   70 (76)
T 2epd_A           10 VVEAVACFAYTGRTAQELSFRRGDVLRLHERASS---DWWRGEHNGMRGLIPHKYITLPAGTEK   70 (76)
T ss_dssp             CEEEEESSCEECSSTTBCEECTTCEEEEEEEEET---TEEEEEETTEEEEEESSSEECCSSCSC
T ss_pred             CEEEEECcCCCCCCCCccCCCCCCEEEEEEeCCC---CEEEEEECCcEEEEehHHEEEcCCCCC
Confidence            3568999999999999999999999999998643   599999999999999999999876544

>1u5s_A Cytoplasmic protein NCK2; protein-protein complex, beta barrel, beta sheet, zinc finger, metal binding protein; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2fry_A

Probab=99.63  E-value=1.4e-15  Score=93.31  Aligned_cols=63  Identities=29%  Similarity=0.575  Sum_probs=54.2

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ...++|+|+|.+...++|+|++||+|.|+.+.+. +.|||.|+ .+|+.||||++||+.+....+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   69 (71)
T 1u5s_A            6 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPEN-DPEWWKCKNARGQVGLVPKNYVVVLSDGPA   69 (71)
T ss_dssp             SSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCT-TTCEEEEEETTTEEEEEETTSEEECCCSCC
T ss_pred             cEEEEEcccCCCCCCCcccCCCCCEEEEEECCCC-CCCCEEEEeCCCCEEEEeHHHEEECCCCCC
Confidence            4579999999999999999999999999997311 34699998 889999999999999976544

>1sem_A SEM-5; SRC-homology 3 (SH3) domain, peptide-binding protein; 2.00A {Caenorhabditis elegans} SCOP: b.34.2.1 PDB: 2sem_A 3sem_A 1k76_A 1kfz_A

Probab=99.63  E-value=1e-15  Score=90.26  Aligned_cols=55  Identities=38%  Similarity=0.797  Sum_probs=50.2

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ..++|+|+|.++..++|+|++||+|.|+...+   .|||.|+.+|+.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 1sem_A            3 KFVQALFDFNPQESGELAFKRGDVITLINKDD---PNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSS---SSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECcCCCCCCCCCcCCCCCCEEEEEEecC---CCEEEEEECCcEEEechHHeEEC
Confidence            46899999999999999999999999999853   45999999999999999999876

>2fpf_A C-JUN-amino-terminal kinase interacting protein 1; scaffold protein 1, islet-brain-1, IB-1, mitogen-activated P kinase 8-interacting protein 1; 3.00A {Rattus norvegicus}

Probab=99.63  E-value=8.8e-16  Score=94.28  Aligned_cols=61  Identities=13%  Similarity=0.263  Sum_probs=52.2

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~~~  131 (137)
                      ....++|+|+|.++..+||+|++||+|.|+...+   .|||.|+  .+|+.|+||++||+.+....
T Consensus         5 ~~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~---~gW~~g~~~~~g~~G~fP~~yv~~~~~~~   67 (71)
T 2fpf_A            5 HEQTHRAIFRFVPRHEDELELEVDDPLLVELQAE---DYWYEAYNMRTGARGVFPAYYAIEVTKEP   67 (71)
T ss_dssp             CCCCEEECSCBCCSSTTBCCBCTTCEEEEEEECT---TSEEEEEETTTTEEEEEEGGGEEECC---
T ss_pred             cCeEEEECeeECccCCCcccCcCCcEEEEeEecC---CCEEEEEECCCCCEEEeehHHEEECCCCC
Confidence            3457999999999999999999999999998764   4599999  78999999999999987543

>3c0c_A Endophilin-A2; endocytosis, SH3, voltage-gated calcium channel, endosome, L binding, membrane, phosphoprotein, proto-oncogene, SH3 DOMA; 1.70A {Rattus norvegicus}

Probab=99.63  E-value=1e-15  Score=94.54  Aligned_cols=60  Identities=27%  Similarity=0.588  Sum_probs=53.9

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|||.++..+||+|++||+|.|+++.+   .|||.|+.+|+.|+||++||+.+...
T Consensus        12 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~W~~g~~~g~~G~~P~~yv~~~~~~   71 (73)
T 3c0c_A           12 DQPSCKALYDFEPENDGELGFREGDLITLTNQID---ENWYEGMLHGQSGFFPLSYVQVLVPL   71 (73)
T ss_dssp             CSCEEEESSCBCCSSTTBCCBCTTCEEEEEEECS---SSEEEEEETTEEEEEEGGGEEEEECC
T ss_pred             CCeEEEECccCCCCCCCCccCcCCCEEEEEEecC---CCEEEEEECCCEEEeChHHEEECCCC
Confidence            4567999999999999999999999999999864   35999999999999999999998653

>2ega_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=6.3e-16  Score=94.62  Aligned_cols=63  Identities=22%  Similarity=0.493  Sum_probs=55.2

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ....+++|+|+|.++..+||+|++||+|.|+++.+   .|||.++..|+.||||.+||+.+....+
T Consensus         6 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   68 (70)
T 2ega_A            6 SGLEQYVVVSNYKKQENSELSLQAGEVVDVIEKNE---SGWWFVSTSEEQGWVPATYLEAQNSGPS   68 (70)
T ss_dssp             CCCBCEECCSCCCCCSSSSCCCCTTCBCEEEEECT---TSEEEEECSSCEEEEEGGGCEESCCCCC
T ss_pred             CCCcEEEECceECCCCCCcccCCCCCEEEEEEccC---CCeEEEEECCCEEEEehHHcEECCCCCC
Confidence            34567999999999999999999999999999864   4599999889999999999999876543

>2jt4_A Cytoskeleton assembly control protein SLA1; endocytosis, SH3, actin-binding, cytoplasm, cytoskeleton, phosphorylation, SH3 domain, DNA damage, DNA repair, nucleus; NMR {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.3e-15  Score=93.34  Aligned_cols=62  Identities=26%  Similarity=0.590  Sum_probs=54.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~~  131 (137)
                      ...+++|+|+|.++..++|+|++||+|.|+.+..  +.|||.|+.  +|+.||||.+||+.+....
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~--~~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~   68 (71)
T 2jt4_A            5 SKKRGIVQYDFMAESQDELTIKSGDKVYILDDKK--SKDWWMCQLVDSGKSGLVPAQFIEPVRDKK   68 (71)
T ss_dssp             CCEEEEECSCBCCSSTTBCCBCTTCEEEEEESSS--CSSEEEEEETTTCCEEEEEGGGEEETTTSS
T ss_pred             CCCEEEEcccCCCCCCCcccCCCCCEEEEEECCC--CCCCEEEEECCCCCeEEechHHeEECCCcC
Confidence            3567999999999999999999999999998752  346999996  8999999999999987644

>1ugv_A KIAA0621, olygophrenin-1 like protein; beta barrel, GRAF protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.63  E-value=4.6e-16  Score=95.91  Aligned_cols=61  Identities=28%  Similarity=0.435  Sum_probs=53.2

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.++..+||+|++||+|.|+.+..  +.+||.++.+|+.|+||.+||+.+...
T Consensus         9 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~--~~~Ww~g~~~g~~G~~P~~yv~~~~~~   69 (72)
T 1ugv_A            9 PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQ--EPGWLEGTLNGKTGLIPENYVEFLSGP   69 (72)
T ss_dssp             SCCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCS--STTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CccEEEEccccCCcCCCEeCCcCCCEEEEEEecC--CCCeEEEEECCcEEEecHHHEEECCCC
Confidence            4567999999999999999999999999887422  346999999999999999999998653

>3cqt_A P59-FYN, proto-oncogene tyrosine-protein kinase FYN; beta barrel, ATP-binding, developmental protein, lipoprotein, manganese, metal-binding; 1.60A {Gallus gallus} PDB: 2l2p_A

Probab=99.63  E-value=7.7e-16  Score=96.63  Aligned_cols=61  Identities=34%  Similarity=0.678  Sum_probs=51.1

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ...++|+|+|.++..+||+|++||+|.|+++.+   .|||.|+.  +|+.|+||++||+.+.....
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~i~vl~~~~---~~Ww~g~~~~~g~~G~~P~~yv~~~~~~~~   67 (79)
T 3cqt_A            5 STLFEALYDYEARTEDDLSFHKGEKFQILNSSE---GDWWEARSLTTGETGYIPSIYLAPVDRLDY   67 (79)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEECTT---SSEEEEEETTTCCEEEEEGGGEEEC-----
T ss_pred             CcEEEECccCCCCCcCcCCCCCCCEEEEEEecC---CCeEEEEECCCCCEEEeehHHeEECCcccc
Confidence            457999999999999999999999999998754   46999996  89999999999999976543

>2cub_A Cytoplasmic protein NCK1; SH3 domain, NCK1 adaptor, tyrosine kinase, signal transduction, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=1.2e-15  Score=97.57  Aligned_cols=60  Identities=30%  Similarity=0.577  Sum_probs=53.7

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      ...++|+|+|.++..+||+|++||+|.|+.+.++   +||+++.+|+.||||.+||+.+....
T Consensus        17 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~---gWw~g~~~g~~G~~P~~yv~~~~~~~   76 (88)
T 2cub_A           17 NMPAYVKFNYMAEREDELSLIKGTKVIVMEKCSD---GWWRGSYNGQVGWFPSNYVTEEGDSP   76 (88)
T ss_dssp             CEEEEESSCCCCCSTTBCCCCTTEEEEEEEECTT---SEEEEEETTEEEEEEGGGEEECCCCC
T ss_pred             CCEEEEccccCCCCCCCcCCCCCCEEEEEEccCC---CeEEEEECCcEEEEehHHEEECCCcc
Confidence            4568999999999999999999999999998643   59999999999999999999986543

>2csi_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.63  E-value=7.8e-16  Score=95.80  Aligned_cols=61  Identities=34%  Similarity=0.606  Sum_probs=53.4

Q ss_pred             CCcceEEeeccCCCC-------CCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANN-------TDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~-------~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.++.       .++|+|++||+|.|+.+.+.  .|||.++.+|+.||||++||+.+...
T Consensus         6 ~~~~~~Al~dy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~~--~gWw~g~~~g~~G~~P~~yv~~~~~~   73 (76)
T 2csi_A            6 SGRRMVALYDYDPRESSPNVDVEAELTFCTGDIITVFGEIDE--DGFYYGELNGQKGLVPSNFLEEVSGP   73 (76)
T ss_dssp             CSEEEECSSCCCTTTTSCSSSTTTSCCCCTTCEEEEESSCCS--SSEEEEEETTEEEEEEGGGCCBCCCC
T ss_pred             CccEEEEcccCCCCCcccCCCCCCcccCCCCCEEEEeEecCC--CCeEEEEECCcEEEEehHHEEECCCC
Confidence            456799999999998       89999999999999987542  36999999999999999999988653

>4e6r_A Cytoplasmic protein NCK2; SH3 domain, protein binding, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MLY; 2.20A {Homo sapiens} PDB: 2frw_A 2js0_A

Probab=99.63  E-value=1.2e-15  Score=89.83  Aligned_cols=55  Identities=25%  Similarity=0.506  Sum_probs=50.3

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      .++|+|+|.++..++|+|++||+|.|+++.+   .|||.++.+|+.|+||++||+...
T Consensus         3 ~a~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~W~~g~~~g~~G~~P~~yv~~~~   57 (58)
T 4e6r_A            3 PAFVXFAYVAEREDELSLVXGSRVTVMEXCS---DGWWRGSYNGQIGWFPSNYVLEEV   57 (58)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEEECT---TSEEEEEETTEEEEEEGGGEEECC
T ss_pred             EEEECccCCCCCCCEeeEeCCCEEEEeEcCC---CCEEEEEECCcEEEEehHHEEECC
Confidence            5899999999999999999999999998864   359999999999999999999764

>2dm1_A Protein VAV-2; RHO family guanine nucleotide exchange factor, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=93.91  Aligned_cols=61  Identities=21%  Similarity=0.518  Sum_probs=53.7

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      .+.+++|+|+|.++..++|+|++||+|.|+++... +.|||.++.+|+.||||.+||+.+..
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~   66 (73)
T 2dm1_A            6 SGGTAVARYNFAARDMRELSLREGDVVRIYSRIGG-DQGWWKGETNGRIGWFPSTYVEEEGI   66 (73)
T ss_dssp             SSSEEEESSCBCCCSTTBCCBCTTCEEECCBSSSS-SSSCEEEEETTEEEEECSSSEEECCC
T ss_pred             CCCEEEECccCCcCCCCcCCCCCCCEEEEEEecCC-CCCeEEEEECCeEEEeehHHEEEcCC
Confidence            45679999999999999999999999999987532 23699999999999999999999864

>3ngp_A Spectrin alpha chain, brain; beta barrel, structural protein; 1.08A {Gallus gallus} PDB: 1e7o_A 1e6g_A 1e6h_A 1uue_A 1h8k_A 2lj3_A 1aey_A 1m8m_A 1shg_A 1u06_A 2nuz_A 2cdt_A 1hd3_A 2f2v_A 2f2w_A 2jm8_A 2jm9_A 2jma_A 3m0r_A 3m0p_A ...

Probab=99.62  E-value=1.2e-15  Score=91.08  Aligned_cols=57  Identities=30%  Similarity=0.720  Sum_probs=51.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++.+   .+||.++.+|+.||||.+||+.+
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~~~~~g~~G~~P~~yv~~~   61 (62)
T 3ngp_A            5 GKELVLVLYDYQEKSPRELTVKKGDILTLLNSTN---KDWWKIEVNGRQGFVPAAYLKKL   61 (62)
T ss_dssp             -CCEEEECSCBCCCSTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CCEEEEECcCCCCCCCCCccCCCCCEEEEeEecC---CCeEEEEECCEEEEEEHHHEEEC
Confidence            3457899999999999999999999999999864   45999999999999999999876

>1y0m_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; SH3 domain, hydrolase; 1.20A {Rattus norvegicus} PDB: 1ywp_A 1ywo_A

Probab=99.62  E-value=1.4e-15  Score=90.71  Aligned_cols=57  Identities=33%  Similarity=0.606  Sum_probs=51.0

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeE-EEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G-~~P~~yv~~~~  128 (137)
                      ..+++|+|+|.++..++|+|++||+|.|+.+.+   .|||.|+.+++.| |||++||+.++
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~W~~g~~~g~~gG~~P~~yv~~~~   60 (61)
T 1y0m_A            3 KSAVKALFDYKAQREDELTFTKSAIIQNVEKQD---GGWWRGDYGGKKQLWFPSNYVEEMI   60 (61)
T ss_dssp             CCCEEESSCBCCCSTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEEGGGEEECC
T ss_pred             CCEEEECcCCCcCCCCCcCCcCCCEEEEEEecC---CCEEEEEECCeEEEEEChHHcEECC
Confidence            356899999999999999999999999999854   3599999888886 99999999885

>2j05_A RAS GTPase-activating protein 1; GTPase activation, SH3 domain, SH2 domain, SRC homology 3, RAS signaling pathway, proto- oncogene, phosphorylation; 1.5A {Homo sapiens} PDB: 2j06_A

Probab=99.62  E-value=1.2e-15  Score=92.16  Aligned_cols=57  Identities=26%  Similarity=0.514  Sum_probs=51.0

Q ss_pred             CcceEEeeccCC-CCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~-~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~  128 (137)
                      ..+++|+|+|.+ +..+||+|++||+|.|+...+   .|||.++  .+|+.|+||++||+.+.
T Consensus         5 ~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~---~gW~~g~~~~~g~~G~~P~~yv~~~~   64 (65)
T 2j05_A            5 RRRVRAILPYTKVPDTDEISFLKGDMFIVHNELE---DGWMWVTNLRTDEQGLIVEDLVEEVG   64 (65)
T ss_dssp             TCEEEESSCBCCCTTSSBCCBCTTCEEEEEEECT---TSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CcEEEEccccCCCCCCCcCcCCCCCEEEEeEecC---CCEEEEEECCCCCEEEEEhHHeEECc
Confidence            356999999999 999999999999999998864   3599999  78999999999999874

>2vwf_A Growth factor receptor-bound protein 2; polymorphism, phosphoprotein, golgi apparatus, alternative splicing, HOST-virus interaction, SH3C, signaling; 1.58A {Homo sapiens} PDB: 2w0z_A 1gcq_A 1gfc_A 1gfd_A 1io6_A 2vvk_A

Probab=99.62  E-value=1.2e-15  Score=89.93  Aligned_cols=55  Identities=31%  Similarity=0.675  Sum_probs=50.1

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ..++|+|+|.++..++|+|++||+|.|+++.+   .+||.++.+|+.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~   57 (58)
T 2vwf_A            3 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSD---PNWWKGACHGQTGMFPRNYVTAV   57 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEEC
T ss_pred             eEEEECceECCCCcCCcCCCCCCEEEEEEcCC---CCEEEEEECCcEEEEchHHeEEC
Confidence            36899999999999999999999999998753   45999999999999999999876

>1x43_A Endophilin B1, SH3 domain GRB2-like protein B1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.62  E-value=1.5e-15  Score=95.61  Aligned_cols=64  Identities=33%  Similarity=0.496  Sum_probs=54.9

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ....++|+|+|.++..+||+|++||+|.|+.+.. .+.|||.++.+|+.||||.+||+.+...++
T Consensus        16 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~-~~~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   79 (81)
T 1x43_A           16 NNRKARVLYDYDAANSTELSLLADEVITVFSVVG-MDSDWLMGERGNQKGKVPITYLELLNSGPS   79 (81)
T ss_dssp             CCEEEEESSCCCCSSTTBCCCCTTCEEEEECCTT-CCTTEEEEEETTEEEEEEGGGEEECCCCCC
T ss_pred             CCeEEEEcccCCCCCCCcCCCCCCCEEEEEEcCC-CCCCcEEEEECCCEEEEehHHEEECCCCCC
Confidence            4567999999999999999999999999998742 124699999999999999999999976443

>1gl5_A Tyrosine-protein kinase TEC; transferase, ATP-binding, SH3 domain, phosphorylation; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.62  E-value=2e-15  Score=91.68  Aligned_cols=56  Identities=32%  Similarity=0.688  Sum_probs=50.9

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~  128 (137)
                      ..++|+|+|.++..++|+|++||+|.|+.+.+   .|||.|+ .+|+.|+||++||+.++
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~g~~G~~P~~yv~~~~   59 (67)
T 1gl5_A            3 EIVVAMYDFQATEAHDLRLERGQEYIILEKND---LHWWRARDKYGSEGYIPSNYVTGKK   59 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSS---SSEEEEECSSSCEEEEETTSEESST
T ss_pred             eEEEECccCCCCCCCeecCCcCCEEEEEEccC---CCcEEEEECCCCEEEEEhHhEEEcC
Confidence            46899999999999999999999999999854   4599999 79999999999999983

>2dbk_A CRK-like protein; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1.8e-15  Score=96.63  Aligned_cols=60  Identities=15%  Similarity=0.258  Sum_probs=52.4

Q ss_pred             CcceEEeeccCCC--CCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          69 NGAVYALYDYEAN--NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        69 ~~~~~al~dy~~~--~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      ..+++|+|+|.+.  ..++|+|++||+|.|+.+.+   .|||+|+.+|+.||||.+||+.+....
T Consensus        16 ~~~~~alydy~~~a~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~fP~~yv~~~~~~~   77 (88)
T 2dbk_A           16 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNI---NGQWEGEVNGRKGLFPFTHVKIFDPQN   77 (88)
T ss_dssp             CEEEEECSCBCCCTTCSSBCCBCTTCEEEEEEECT---TSCEEEECSSCEEEECTTTEEECCSSC
T ss_pred             CEEEEEcccccCCCCCCCcccCCCCCEEEEEEecC---CCEEEEEeCCCEEEEehHHeEECCCCC
Confidence            3468999999955  99999999999999999864   459999999999999999999996543

>2fpe_A C-JUN-amino-terminal kinase interacting protein 1; SRC-homology 3 (SH3) domain, all beta structure, signaling protein; HET: P6G; 1.75A {Rattus norvegicus} PDB: 2fpd_A*

Probab=99.62  E-value=1.2e-15  Score=91.20  Aligned_cols=56  Identities=14%  Similarity=0.271  Sum_probs=50.5

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~  128 (137)
                      ..++|+|+|.++.++||+|++||+|.|+...+   .|||.|+  .+|+.|+||++||+.+.
T Consensus         4 ~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~---~~W~~g~~~~~g~~G~fP~~yv~~~~   61 (62)
T 2fpe_A            4 QTHRAIFRFVPRHEDELELEVDDPLLVELQAE---DYWYEAYNMRTGARGVFPAYYAIEVT   61 (62)
T ss_dssp             CCEEECSCBCCSSTTBCCBCTTCEEEEEEECT---TSEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CEEEECccCCccCcCcCcCCCCCEEEEEEecC---CCEEEEEECCCCCEEEechHHEEECc
Confidence            46899999999999999999999999998764   4599999  78999999999999874

>2dnu_A RUH-061, SH3 multiple domains 1; RSGI, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1.1e-15  Score=93.80  Aligned_cols=62  Identities=26%  Similarity=0.552  Sum_probs=54.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++.+   .|||.++..|+.||||.+||+.+....+
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   68 (71)
T 2dnu_A            7 GEEKYVTVQPYTSQSKDEIGFEKGVTVEVIRKNL---EGWWYIRYLGKEGWAPASYLKKAKDSGP   68 (71)
T ss_dssp             CSEEEECSSCBCCSSTTBCCBCTTCEEEECCCCS---SSEEEEEETTEEEEEEGGGCEECCCCCS
T ss_pred             CCCEEEECCccCCCCCCCCcCCCCCEEEEeECCC---CCeEEEEECCcEEEEEHHHeEEccCCCC
Confidence            4567999999999999999999999999998754   4599999889999999999999976443

>1x2k_A OSTF1, osteoclast stimulating factor 1; SH3 domain, human osteoclast stimulating factor 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.8e-15  Score=92.08  Aligned_cols=59  Identities=27%  Similarity=0.587  Sum_probs=52.6

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++.+   .+||.++.+|+.||||.+||+.+..
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~   64 (68)
T 1x2k_A            6 SGKVFRALYTFEPRTPDELYFEEGDIIYITDMSD---TNWWKGTSKGRTGLIPSNYVAEQSG   64 (68)
T ss_dssp             CSEEEEESSCCCCCSTTBCCCCSSCEEEEEECSC---SSEEEEESSSCEEEEETTTEEECCC
T ss_pred             CcEEEEECceECCCCCCcccCCCCCEEEEEEcCC---CCEEEEEECCcEEEEehHHeEEcCC
Confidence            3456899999999999999999999999998853   4599999999999999999999854

>1b07_A Protein (proto-oncogene CRK (CRK)); SH3 domain, inhibitors, peptoids, protein-protein recognition, proline-rich motifs, signal transduction; 2.50A {Mus musculus} SCOP: b.34.2.1

Probab=99.62  E-value=1.1e-15  Score=92.50  Aligned_cols=57  Identities=28%  Similarity=0.662  Sum_probs=51.1

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      ..++|+|||.++..++|+|++||+|.|+++.+   .|||.++ .+|+.|+||++||+.+..
T Consensus         4 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~~g~~G~~P~~yv~~~~~   61 (65)
T 1b07_A            4 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPE---EQWWNAEDSEGKRGMIPVPYVEKYHH   61 (65)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSS---SSEEEEECTTSCEEEEEGGGEEECC-
T ss_pred             eEEEECCcCCCCCCCccCCcCCCEEEEEEecC---CCeEEEEECCCCEEEEChHHEeecCC
Confidence            46899999999999999999999999999754   4599999 889999999999998864

>1x2q_A Signal transducing adapter molecule 2; SH3 domain, signal transducing adaptor molecule, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.7e-15  Score=96.72  Aligned_cols=62  Identities=37%  Similarity=0.644  Sum_probs=54.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ....++|+|||.++..+||+|++||+|.|+.+.+   .|||+|+..|+.||||.+||+.+....+
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~~~   77 (88)
T 1x2q_A           16 VARKVRALYDFEAVEDNELTFKHGEIIIVLDDSD---ANWWKGENHRGIGLFPSNFVTTNLNIET   77 (88)
T ss_dssp             CCEEEEESSCCCCCSSSCCCCCSSCEEEEEECSC---SSSEEEEETTEEEEECGGGEESCSSCCS
T ss_pred             CCeEEEEcccCCCCCcCccCCCCCCEEEEEEeCC---CCEEEEEECCcEEEEehHHEEEcCCcCc
Confidence            4567999999999999999999999999998753   4599999999999999999999876543

>4glm_A Dynamin-binding protein; SH3 domain, DNMBP, structural genomics, structural genomics consortium, SGC, SRC homology 3 domains, cell junctions; 1.90A {Homo sapiens}

Probab=99.62  E-value=1.4e-15  Score=93.33  Aligned_cols=59  Identities=27%  Similarity=0.488  Sum_probs=52.2

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|||.++..++|+|++||+|.|+++.++   |||.++.+|+.|+||.+||+.++.
T Consensus        12 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~---~W~~g~~~g~~G~~P~~yv~~~~~   70 (72)
T 4glm_A           12 ALTYGVALYRFQALEPNELDFEVGDKIRILATLED---GWLEGSLKGRTGIFPYRFVKLCPA   70 (72)
T ss_dssp             -CCEEEESSCBCCCSTTBCCBCTTCEEEEEEECST---TEEEEEETTEEEEEEGGGEEEEC-
T ss_pred             CCeEEEECccCCCCCCCcCCCCCCCEEEEEEccCC---CEEEEEECCcEEEEChHHeEECCC
Confidence            34579999999999999999999999999998643   599999999999999999999864

>3eg3_A Proto-oncogene tyrosine-protein kinase ABL1; beta, ATP-binding, cell adhesion, cytoskeleton, LIPO magnesium, manganese, metal-binding, myristate; 1.40A {Homo sapiens} PDB: 3egu_A 3eg0_A 3eg2_A 3eg1_A 1abo_A 1abq_A 1ju5_C* 2o88_A 1bbz_A 1awo_A

Probab=99.61  E-value=2.1e-15  Score=90.24  Aligned_cols=58  Identities=29%  Similarity=0.478  Sum_probs=51.3

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      ...++|+|+|.++..++|+|++||+|.|+.+..  +.+||.++.+|+.||||++||+.+.
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~--~~~W~~~~~~g~~G~~P~~yv~~~~   62 (63)
T 3eg3_A            5 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNH--NGEWCEAQTKNGQGWVPSAYITPVN   62 (63)
T ss_dssp             TTEEEESSCBCCCSSSBCCBCTTCEEEEEEECT--TSSEEEEEETTEEEEEEGGGEEESC
T ss_pred             CEEEEEcceECCCCCCccCCCCCCEEEEEEeCC--CCCeEEEEECCCeEEEehHHeEECC
Confidence            356999999999999999999999999998643  3469999999999999999999874

>1j3t_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.61  E-value=1.8e-15  Score=93.67  Aligned_cols=61  Identities=25%  Similarity=0.616  Sum_probs=54.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ...+++|+|+|.++..++|+|++||+|.|+++. +   |||+++.+|+.||||.+||+.+.....
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~---~Ww~g~~~g~~G~~P~~yv~~~~~~~~   69 (74)
T 1j3t_A            9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-E---NWWFGEVHGGRGWFPKSYVKIIPGSES   69 (74)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-S---SEEEEESTTCCCEEEGGGEEECCCSTT
T ss_pred             CCeEEEECCCCCCCCCCccCCCCCCEEEEEecC-C---CEEEEEECCcEEEEchHHeEECCCCCC
Confidence            456799999999999999999999999999983 3   599999999999999999999976443

>2k9g_A SH3 domain-containing kinase-binding protein 1; CIN85, adaptor protein, downregulation, CBL, apoptosis, junction, cytoplasmic vesicle, cytoskeleton; NMR {Homo sapiens}

Probab=99.61  E-value=1.3e-15  Score=94.00  Aligned_cols=61  Identities=31%  Similarity=0.662  Sum_probs=53.3

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ...+++|+|+|.++..++|+|++||+|.|+.+... +.|||.|+.+|+.|+||.+||+.++.
T Consensus         8 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-~~~W~~g~~~g~~G~~P~~yv~~~~~   68 (73)
T 2k9g_A            8 SKDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCI-DVGWWEGELNGRRGVFPDNFVKLLPP   68 (73)
T ss_dssp             SCEEEEECSCBCCSSTTBCCBCTTCEEEEEECCSS-STTEEEEEETTEEEEEEGGGEEECCS
T ss_pred             CccEEEECccCCCCCCCeeeECCCCEEEEEECCCC-CCCEEEEEECCeEEEEchHHEEECCc
Confidence            45679999999999999999999999999987411 34699999999999999999999864

>2da9_A SH3-domain kinase binding protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.61  E-value=1.6e-15  Score=92.81  Aligned_cols=62  Identities=29%  Similarity=0.600  Sum_probs=53.6

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.++..+||+|++||+|.|+.+... +.|||.++.+|+.|+||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~-~~~W~~g~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2da9_A            6 SGDYCKVIFPYEAQNDDELTIKEGDIVTLINKDCI-DVGWWEGELNGRRGVFPDNFVKLLSGP   67 (70)
T ss_dssp             SSEEEEECSCCCCSSTTBCCCCTTEEEEEEECCCS-STTEEEEECSSCEEEEEGGGEEECCCC
T ss_pred             CCcEEEECcCCCCCCcCEeeEcCCCEEEEEECCCC-CCCeEEEEECCcEEEechHHeEECCCC
Confidence            34579999999999999999999999999987411 346999999999999999999998653

>1wi7_A SH3-domain kinase binding protein 1; beta barrel, SH3KBP1, RUK, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.61  E-value=7e-16  Score=93.93  Aligned_cols=60  Identities=28%  Similarity=0.524  Sum_probs=53.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.++..+||+|++||+|.|+.+.+   .|||.++.+|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wi7_A            6 SGRRCQVAFSYLPQNDDELELKVGDIIEVVGEVE---EGWWEGVLNGKTGMFPSNFIKELSGP   65 (68)
T ss_dssp             CCCCEEESSCBCCSSTTBCCBCTTCEECCCEEEE---TTEEEECSTTCCEEEETTSEEECCSS
T ss_pred             CCCEEEECccCCcCCCCCccCcCCCEEEEEEcCC---CCeEEEEECCcEEEEchHHEEECCCC
Confidence            4567999999999999999999999999998854   35999999999999999999998653

>2x3w_D Syndapin I, protein kinase C and casein kinase substrate in N protein 1; endocytosis, N-WAsp, dynamin, pacsin I, transferase; 2.64A {Mus musculus} PDB: 2x3x_D

Probab=99.61  E-value=7.6e-16  Score=91.44  Aligned_cols=57  Identities=37%  Similarity=0.641  Sum_probs=48.8

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC-CeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-g~~G~~P~~yv~~~  127 (137)
                      +.+++|+|+|.++.+++|+|++||+|.|+++.+  +.|||.++.. |+.|+||++||+.+
T Consensus         3 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~--~~~W~~g~~~~g~~G~~P~~yv~~l   60 (60)
T 2x3w_D            3 GVRVRALYDYDGQEQDELSFKAGDELTKLGEED--EQGWCRGRLDSGQLGLYPANYVEAI   60 (60)
T ss_dssp             -CEEEECSCBCCSSSSBCCBCTTCEEEECSCCC--SSSEEEEECSSCCEEEEEGGGEEC-
T ss_pred             CCEEEECcccCccCCCcccCCCCCEEEEEEccC--CCCceEEEeCCCCEEEecHHHEEEC
Confidence            456899999999999999999999999998643  3469999965 99999999999864

>1uhf_A Intersectin 2; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.61  E-value=6.3e-16  Score=94.51  Aligned_cols=61  Identities=30%  Similarity=0.567  Sum_probs=53.9

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      .....++|+|+|.++..++|+|++||+|.|+++ +   .|||.++.+|+.||||.+||+.+....
T Consensus         6 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~---~~Ww~g~~~g~~G~~P~~yv~~~~~~~   66 (69)
T 1uhf_A            6 SGGEEYIALYPYSSVEPGDLTFTEGEEILVTQK-D---GEWWTGSIGDRSGIFPSNYVKPKDSGP   66 (69)
T ss_dssp             CCSEEEECSSCBCCSSSSBCCBCTTCEEEECEE-E---TTEEEECSTTCCEEECGGGCEECCCCC
T ss_pred             CCCCEEEEeeeECCCCcCccCCCCCCEEEEEEe-C---CCEEEEEeCCcEEEEchHHeEECCCCC
Confidence            345679999999999999999999999999987 3   359999999999999999999987644

>2ysq_A RHO guanine nucleotide exchange factor 9; SH3 domain, CDC42 guanine nucleotide exchange factor (GEF) 9, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=2.2e-15  Score=94.79  Aligned_cols=60  Identities=28%  Similarity=0.717  Sum_probs=53.6

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.++..++|+|++||+|.|+.+.+   .+||+++..|+.||||.+||+.+...
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~   68 (81)
T 2ysq_A            9 SIVSAEAVWDHVTMANRELAFKAGDVIKVLDASN---KDWWWGQIDDEEGWFPASFVRLWVNQ   68 (81)
T ss_dssp             CCEEEEESSCCCCSSSSSCCCCTTCEEEEEECCS---SSEEEEECSSCEEEEEGGGEEESSCC
T ss_pred             CceEEEEeeeECCCCCCcCCCCCCCEEEEEEEcC---cCEEEEEECCCEEEechHHEEEcCCc
Confidence            3457999999999999999999999999998854   45999998899999999999999654

>2dil_A Proline-serine-threonine phosphatase-interacting protein 1; SH3 domain, PEST phosphatase-interacting protein 1, CD2- binding protein 1; NMR {Homo sapiens}

Probab=99.61  E-value=1.5e-15  Score=92.62  Aligned_cols=59  Identities=34%  Similarity=0.673  Sum_probs=53.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ...+++|+|+|.++..++|+|++||+|.|+.+.+   .+||.++.+|+.||||.+||+.+..
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~   65 (69)
T 2dil_A            7 GAQEYRALYDYTAQNPDELDLSAGDILEVILEGE---DGWWTVERNGQRGFVPGSYLEKLSG   65 (69)
T ss_dssp             CCCEEECCSCBCCSSSSSCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGCCBCCC
T ss_pred             CCcEEEECccCCccCcCccCCCCCCEEEEEECCC---CCEEEEEECCCEEEEehHHeEEcCC
Confidence            4567999999999999999999999999998853   4599999999999999999998864

>2a28_A BZZ1 protein; SH3 domain, signaling protein; 1.07A {Saccharomyces cerevisiae}

Probab=99.61  E-value=1.1e-15  Score=88.93  Aligned_cols=53  Identities=32%  Similarity=0.612  Sum_probs=48.1

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCee
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  125 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~  125 (137)
                      +++|+|+|.++..++|+|++||+|.|+++.+  +.|||.++.+|+.|+||.+||+
T Consensus         2 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~--~~~W~~g~~~g~~G~~P~~yv~   54 (54)
T 2a28_A            2 AMEAIYAYEAQGDDEISIDPGDIITVIRGDD--GSGWTYGECDGLKGLFPTSYCK   54 (54)
T ss_dssp             EEEBCSCBCCCSTTBCCBCTTCEEEEEECCC--SSSEEEEEETTEEEEEEGGGBC
T ss_pred             EEEECccCCcCCCCCccCCCCCEEEEEEecC--CCCEEEEEECCeEEEeeHHHcC
Confidence            5899999999999999999999999999863  2469999999999999999985

>2gnc_A SLIT-ROBO RHO GTPase-activating protein 1; beta barrel, signaling protein; 1.80A {Mus musculus}

Probab=99.61  E-value=1e-15  Score=91.01  Aligned_cols=55  Identities=29%  Similarity=0.658  Sum_probs=49.7

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeee
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  126 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~  126 (137)
                      ..+++|+|+|.++..++|+|++||+|.|+++.++   |||.++.+|+.|+||++||+.
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~---~Ww~g~~~g~~G~~P~~yv~~   60 (60)
T 2gnc_A            6 PEFAIAKFDYVGRSARELSFKKGASLLLYHRASE---DWWEGRHNGIDGLVPHQYIVV   60 (60)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEET---TEEEEEETTEEEEEEGGGEEC
T ss_pred             CEEEEECCCCCcCCcCCcCCCCCCEEEEEEecCC---CEEEEEECCeEEEEeHhhEEC
Confidence            4568999999999999999999999999998643   599999999999999999973

>3u23_A CD2-associated protein; structural genomics, structural genomics consortium, SGC, BE barrel, adaptor protein, protein binding; 1.11A {Homo sapiens} PDB: 2krn_A

Probab=99.61  E-value=1.5e-15  Score=91.32  Aligned_cols=57  Identities=33%  Similarity=0.609  Sum_probs=51.4

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      ..+++|+|||.++..++|+|++||+|.|+++.++   |||.|+.+|+.|+||.+||+.++
T Consensus         7 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~---~W~~g~~~g~~G~~P~~yv~~~~   63 (65)
T 3u23_A            7 KRQCKVLFEYIPQNEDELELKVGDIIDINEEVEE---GWWSGTLNNKLGLFPSNFVKELE   63 (65)
T ss_dssp             -CEEEECSCBCCSSTTBCCBCTTCEEEEEEEEET---TEEEEEETTEEEEEEGGGEEECC
T ss_pred             CeEEEEeeeeCCCCcCCcCCCCCCEEEEEEecCC---CEEEEEECCCEEEeehHHEEECc
Confidence            4579999999999999999999999999988643   59999999999999999999875

>2ege_A Uncharacterized protein KIAA1666; SH3 domain, KIAA1666 protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.8e-15  Score=93.93  Aligned_cols=60  Identities=22%  Similarity=0.520  Sum_probs=51.8

Q ss_pred             CCcceEEeeccCCCC-------CCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANN-------TDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~-------~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|+|.++.       .++|+|++||+|.|+....  +.|||.++.+|++|+||++||+.++.
T Consensus         6 ~~~~~~Alydy~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~--~~gWw~g~~~g~~G~fP~~yv~~~~~   72 (75)
T 2ege_A            6 SGKIMIAALDYDPGDGQMGGQGKGRLALRAGDVVMVYGPMD--DQGFYYGELGGHRGLVPAHLLDHMSL   72 (75)
T ss_dssp             CSEEEEESSCBCTTTTCCCSSSCCBCCBCTTCEEEEESCCC--TTCEEEEESSSCEEEEETTTEEECCC
T ss_pred             CCcEEEECCCCCCCccccCCCCCCcceECCCCEEEEeEccC--CCCEEEEEECCcEEEEChHHeEEccC
Confidence            345799999999999       9999999999999997422  34699999999999999999998853

>1cka_A C-CRK N-terminal SH3 domain; complex (oncogene protein/peptide); 1.50A {Mus musculus} SCOP: b.34.2.1 PDB: 1ckb_A 1m3c_A 1m30_A 1m3b_A 1m3a_A

Probab=99.61  E-value=1.2e-15  Score=89.67  Aligned_cols=54  Identities=30%  Similarity=0.707  Sum_probs=48.6

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeec
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~  127 (137)
                      .++|+|+|.++..++|+|++||+|.|+++.+   .|||.++ .+|+.|+||++||+.+
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~g~~G~~P~~yv~~~   57 (57)
T 1cka_A            3 YVRALFDFNGNDEEDLPFKKGDILRIRDKPE---EQWWNAEDSEGKRGMIPVPYVEKY   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSS---SSEEEEECTTSCEEEEEGGGEEC-
T ss_pred             EEEECCcCCCCCCCCCCCCCCCEEEEEEecC---CCcEEEEeCCCCEEEEeHHHEEEC
Confidence            5899999999999999999999999998754   4599999 8899999999999864

>2gqi_A RAS GTPase-activating protein 1; GAP, RAS P21 protein activator, P120GAP, rasgap, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=1.2e-15  Score=93.72  Aligned_cols=59  Identities=25%  Similarity=0.525  Sum_probs=52.6

Q ss_pred             CCcceEEeeccCC-CCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~-~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|+|.+ +..+||+|++||+|.|+.+.++   |||+++  .+|+.|+||++||+.+..
T Consensus         6 ~~~~~~Alydy~~~~~~~eLsf~~Gd~i~v~~~~~~---~W~~g~~~~~g~~G~~P~~yv~~~~~   67 (71)
T 2gqi_A            6 SGRRVRAILPYTKVPDTDEISFLKGDMFIVHNELED---GWMWVTNLRTDEQGLIVEDLVEEVSG   67 (71)
T ss_dssp             SCCCEEESSCCCCCTTSSCCCCCTTCBCCCCEECSS---SCEEEECTTTCCEEEECTTSEEECCC
T ss_pred             CCCEEEECcccCCCCCCCCCCCCCCCEEEEEEecCC---CEEEEEECCCCCEEEeeHHHEEECCC
Confidence            3457999999999 9999999999999999988643   599999  789999999999999854

>2iim_A Proto-oncogene tyrosine-protein kinase LCK; beta-barrels, signaling protein; HET: PG4; 1.00A {Homo sapiens} SCOP: b.34.2.1 PDB: 1h92_A 1kik_A

Probab=99.60  E-value=1.9e-15  Score=90.36  Aligned_cols=56  Identities=30%  Similarity=0.680  Sum_probs=49.8

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeec
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~  127 (137)
                      ....++|+|+|.+...++|+|++||+|.|+++.    .|||.++  .+|+.|+||++||+.+
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~----~~Ww~g~~~~~g~~G~~P~~yv~~~   62 (62)
T 2iim_A            5 QDNLVIALHSYEPSHDGDLGFEKGEQLRILEQS----GEWWKAQSLTTGQEGFIPFNFVAKA   62 (62)
T ss_dssp             TTCEEEESSCBCCCSTTBCCBCTTCEEEEEECC----SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCcEEEEcccCCCCCCCCcCCCCCCEEEEEEcC----CCEEEEEECCCCCEEEEEHHHEEEC
Confidence            445799999999999999999999999999873    2699999  6899999999999864

>1wxt_A Hypothetical protein FLJ21522; SH3 domain, EPS8-related protein 3, protein-protein interaction, structural genomics; NMR {Homo sapiens}

Probab=99.60  E-value=1.9e-15  Score=92.08  Aligned_cols=58  Identities=33%  Similarity=0.641  Sum_probs=52.2

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...++|+|+|.++..+||+|++||+|.|+.+.    .+||.++ .+|+.||||.+||+.+...
T Consensus         7 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~----~~Ww~~~~~~g~~G~~P~~yv~~~~~~   65 (68)
T 1wxt_A            7 GLKMQVLYEFEARNPRELTVVQGEKLEVLDHS----KRWWLVKNEAGRSGYIPSNILEPLSGP   65 (68)
T ss_dssp             CEEEEESSCBCCCSSSBCCBCTTCEEEEEECS----SSEEEEECTTSCEEEEEGGGEECCCCS
T ss_pred             CeEEEECceECCCCcCcCCCCCCCEEEEEEcC----CCEEEEEECCCCEEEEEhHHcEECCCC
Confidence            45699999999999999999999999999883    3599999 8999999999999998653

>1nm7_A Peroxisomal membrane protein PAS20; yeast, PEX5P, PEX14P, PEX13P, import machine, SH3 domain, protein transport; NMR {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.60  E-value=1.5e-15  Score=93.04  Aligned_cols=58  Identities=31%  Similarity=0.709  Sum_probs=49.7

Q ss_pred             cceEEeeccCCCCCC-CCCCCCCCEEEEEEecCC--CCCCeEEEEe-CCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTD-ELSFKTGECIIVLRKGDE--NEREWWWSKL-NNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~-eLs~~~Gd~i~vl~~~~~--~~~gWw~g~~-~g~~G~~P~~yv~~~  127 (137)
                      .+++|+|+|.++.++ ||+|++||+|.|+++.+.  ++.|||.++. +|+.|+||+|||+.+
T Consensus         8 ~~~~aly~y~a~~~~dELsf~~Gd~i~Vl~~~~~~~~~~gWW~g~~~~G~~G~~PsnyV~~l   69 (69)
T 1nm7_A            8 HFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   69 (69)
T ss_dssp             -CEEECSCCCCSSTTSCCCCCTTCEEEECCSSSSSCCSSSCEEEEETTTEEEEECGGGEEEC
T ss_pred             eEEEEEecccCCCCCCccCCCCCCEEEEEecCCCCCCCCCeeEEEeCCCCEEEecHHHEEEC
Confidence            358999999999998 999999999999987542  1247999996 899999999999864

>1zlm_A Osteoclast stimulating factor 1; beta barrel, signaling protein; 1.07A {Homo sapiens}

Probab=99.60  E-value=2.2e-15  Score=88.94  Aligned_cols=54  Identities=30%  Similarity=0.647  Sum_probs=49.2

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeee
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  126 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~  126 (137)
                      ..++|+|+|.+...++|+|++||+|.|+...+   .|||.++.+|+.|+||++||++
T Consensus         4 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~   57 (58)
T 1zlm_A            4 KVFRALYTFEPRTPDELYFEEGDIIYITDMSD---TNWWKGTSKGRTGLIPSNYVAE   57 (58)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEE
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEEEeCC---CCEEEEEECCCEEEEehHHEEe
Confidence            46899999999999999999999999998753   4699999999999999999975

>2ct4_A CDC42-interacting protein 4; thyroid receptor interacting protein 10, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=3.9e-15  Score=91.06  Aligned_cols=61  Identities=23%  Similarity=0.483  Sum_probs=52.8

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC-CeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.++..+||+|++||+|.|++..+  ..|||.++.. |+.||||.+||+.+...
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~vl~~~~--~~gW~~~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct4_A            6 SGGHCVAIYHFEGSSEGTISMAEGEDLSLMEEDK--GDGWTRVRRKEGGEGYVPTSYLRVTSGP   67 (70)
T ss_dssp             SSCEEEESSCBCCCSTTCCCBCTTCEEEEEECCS--SSCEEEEECSSSCEEEEEGGGEEECCCC
T ss_pred             cCCEEEEcccCCCCCCCcCCCCCCCEEEEEeccC--CCCeEEEEeCCCCEEEEEhHHeEEcCCC
Confidence            3457999999999999999999999999998753  3469999955 99999999999988653

>1tg0_A BBC1 protein, myosin tail region-interacting protein MTI1; yeast, SH3 domain, structural genomics, contractIle protein; 0.97A {Saccharomyces cerevisiae} PDB: 1zuk_A 1wdx_A

Probab=99.60  E-value=2.2e-15  Score=91.75  Aligned_cols=56  Identities=27%  Similarity=0.571  Sum_probs=49.1

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCC-----eeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-----KEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g-----~~G~~P~~yv~~~  127 (137)
                      ..+++|+|+|.++..++|+|++||+|.|+++.+   .|||.|+..+     +.|+||++||+.+
T Consensus         7 ~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~~~g~~~~~G~fP~~yv~~~   67 (68)
T 1tg0_A            7 PFKVVAQFPYKSDYEDDLNFEKDQEIIVTSVED---AEWYFGEYQDSNGDVIEGIFPKSFVAVQ   67 (68)
T ss_dssp             SEEEEESSCBCCSCTTBCCBCTTCEEEEEEECS---SSEEEEEEECTTSCEEEEEEEGGGEEEC
T ss_pred             CEEEEECeeECcCCcCCCCCCCCCEEEEEEecC---CCeEEEEECCCCCCCEEEEEchHHEEEC
Confidence            346899999999999999999999999998854   3599999544     9999999999875

>2csq_A RIM-BP2, RIM binding protein 2; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.60  E-value=2.8e-15  Score=97.46  Aligned_cols=61  Identities=25%  Similarity=0.415  Sum_probs=52.7

Q ss_pred             CCcceEEeeccCCC--------CCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEAN--------NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~--------~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|+|.+.        ..++|+|++||+|.|+.+.+  +.|||+|+.+|+.||||.+||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~~~eLsf~~Gd~i~vl~~~~--~~gWw~g~~~g~~G~~P~~yv~~~~~~   84 (97)
T 2csq_A           16 PARIFVALFDYDPLTMSPNPDAAEEELPFKEGQIIKVYGDKD--ADGFYRGETCARLGLIPCNMVSEIQAD   84 (97)
T ss_dssp             CCEEEECSSCBCTTTTSSCHHHHTTBCCBCTTCEEEEEEEEC--TTCEEEEEETTEEEEEETTTSEECCCC
T ss_pred             CceEEEEccccCCCcccccCCCCCCccCCCCCCEEEEEEecC--CCCeEEEEECCcEEEEehHHeEECCCC
Confidence            34568999999998        78999999999999997543  346999999999999999999999653

>2jw4_A Cytoplasmic protein NCK1; SH3 domain, phosphorylation, SH2 domain, signaling protein; NMR {Homo sapiens}

Probab=99.60  E-value=3.4e-15  Score=91.95  Aligned_cols=61  Identities=30%  Similarity=0.553  Sum_probs=53.1

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++ +   .|||.++ .+|+.||||.+||+.+.....
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~---~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   67 (72)
T 2jw4_A            6 EEVVVVAKFDYVAQQEQELDIKKNERLWLLDD-S---KSWWRVRNSMNKTGFVPSNYVERKNSARA   67 (72)
T ss_dssp             CCEEEECSSCCCCSSTTSCCCCTTCEEEEEEC-S---SSSEEEECTTSCEEEECTTSCEECCCCCS
T ss_pred             CCeEEEECcCCCcCCCCcccCCCCCEEEEEEC-C---CCEEEEEECCCCEEEEEhhHEEEcCCCcc
Confidence            34578999999999999999999999999986 2   3699999 589999999999999876543

>2ecz_A Sorbin and SH3 domain-containing protein 1; glycoprotein, membrane, nuclear protein, phosphorylation, polymorphism, transport, structural genomics; NMR {Homo sapiens}

Probab=99.60  E-value=3e-15  Score=91.55  Aligned_cols=60  Identities=25%  Similarity=0.587  Sum_probs=52.6

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC--CeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~--g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.++..++|+|++||+|.|+++.++   +||.++..  |+.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~~---~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ecz_A            6 SGGEAIAKFNFNGDTQVEMSFRKGERITLLRQVDE---NWYEGRIPGTSRQGIFPITYVDVISGP   67 (70)
T ss_dssp             CCBCEEESSCCCCCSTTBCCCCTTCBCEEEEEEET---TEEEEEETTTTEEEEECTTTEEESSSC
T ss_pred             CCCEEEECccCCCCCcCCcCCCCCCEEEEEEecCC---CeEEEEECCCCCEEEEchHHEEECCCC
Confidence            45679999999999999999999999999998543   59999955  59999999999998654

>2v1q_A SLA1, cytoskeleton assembly control protein SLA1; structural genomics, phosphorylation, structural protein, yeast, SH3 domain; 1.2A {Saccharomyces cerevisiae} PDB: 1z9z_A

Probab=99.60  E-value=2.5e-15  Score=89.15  Aligned_cols=56  Identities=29%  Similarity=0.653  Sum_probs=49.6

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~  127 (137)
                      .+++|+|+|.++.+++|+|++||+|.|++...  +.|||.++.  +|+.|+||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~--~~~Ww~g~~~~~g~~G~~P~~yv~~l   60 (60)
T 2v1q_A            3 ERGIVQYDFMAESQDELTIKSGDKVYILDDKK--SKDWWMCQLVDSGKSGLVPAQFIEPV   60 (60)
T ss_dssp             CEEEECSCBCCCSTTBCCBCTTCEEEEEESSS--CSSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             cEEEEeeeECCCCCCCccCCCCCEEEEEeCCC--CCCCEEEEECCCCCEEEEEHHHEEEC
Confidence            46899999999999999999999999998732  346999996  899999999999864

>1csk_A C-SRC SH3 domain; phosphotransferase; 2.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.60  E-value=2.1e-15  Score=92.54  Aligned_cols=59  Identities=19%  Similarity=0.465  Sum_probs=49.9

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~  128 (137)
                      .+..++|+|||.++..++|+|++||+|.|+....  +.|||.|+ .+|+.||||++||+...
T Consensus        10 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~--~~~Ww~g~~~~g~~G~~P~~yv~~~~   69 (71)
T 1csk_A           10 SGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTK--DPNWYKAKNKVGREGIIPANYVQKRE   69 (71)
T ss_dssp             -CEEEEESSCBCCSSTTBCCBCTTCEEEEEEECS--STTEEEEECTTSCEEEEETTSEEC--
T ss_pred             CCCEEEEceeECcCCCCcCCCCCCCEEEEeECCC--CCCCEEEEeCCCCEEEEehHHeEEcc
Confidence            4567999999999999999999999999998322  34699999 89999999999998764

>3rnj_A Brain-specific angiogenesis inhibitor 1-associate 2; structural genomics, structural genomics consortium, SGC, BE barrel; HET: EDT; 1.50A {Homo sapiens} SCOP: b.34.2.1

Probab=99.60  E-value=1.7e-15  Score=91.91  Aligned_cols=58  Identities=22%  Similarity=0.421  Sum_probs=49.4

Q ss_pred             CcceEEeeccCCCCCCC-CCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDE-LSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~e-Ls~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~  128 (137)
                      ..+++|+|+|.+...++ |+|++||+|.|+....  +.|||.|+  .+|+.|+||.+||+.++
T Consensus         7 ~~~~~al~dy~~~~~~e~Lsf~~Gd~i~v~~~~~--~~gW~~g~~~~~g~~G~fP~~yv~~l~   67 (67)
T 3rnj_A            7 RMRVKAIFSHAAGDNSTLLSFKEGDLITLLVPEA--RDGWHYGESEKTKMRGWFPFSYTRVLD   67 (67)
T ss_dssp             CCEEEESSCBCCCSCTTBCCBCTTCEEEECSSSC--BTTEEEEEETTTCCEEEEEGGGEEECC
T ss_pred             CeEEEEccccCCCCCCCCccCCCCCEEEEeeccC--CCCCEEEEECCCCCEEEEEHHHeEECc
Confidence            45799999999988777 9999999999986422  34699999  68999999999999863

>1yn8_A NBP2, NAP1-binding protein 2; SH3 domain, unknown function; 1.70A {Saccharomyces cerevisiae}

Probab=99.60  E-value=1.9e-15  Score=89.34  Aligned_cols=56  Identities=27%  Similarity=0.548  Sum_probs=49.5

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYP  128 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~  128 (137)
                      .+++|+|+|.++..++|+|++||+|.|+.+.+   .|||.++.  +|+.|+||++||+.++
T Consensus         2 ~~~~al~d~~~~~~~eLs~~~Gd~i~v~~~~~---~gW~~g~~~~~g~~G~~P~~yv~~~~   59 (59)
T 1yn8_A            2 QRAVALYDFEPENDNELRLAEGDIVFISYKHG---QGWLVAENESGSKTGLVPEEFVSYIQ   59 (59)
T ss_dssp             EEEEECSCBCCCSTTBCCBCTTCEEEEEEEEE---TTEEEEECTTSSCEEEEEGGGEEECC
T ss_pred             CEEEECccCCCCCCCCcCCCCCCEEEEEEcCC---CCeEEEEECCCCCEEEEehHHeEECC
Confidence            46899999999999999999999999998864   35999994  3899999999999863

>1uj0_A Signal transducing adaptor molecule (SH3 domain and ITAM motif) 2; STAM, SH3, GRB2, GADS, PXXP, HRS, endocytosis, early endosome, signaling protein/signaling protein complex; 1.70A {Mus musculus} SCOP: b.34.2.1

Probab=99.60  E-value=2.3e-15  Score=90.05  Aligned_cols=56  Identities=39%  Similarity=0.689  Sum_probs=50.3

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ..+++|+|+|.++..++|+|++||+|.|+...+   .|||.|+..|+.|+||.+||+..
T Consensus         5 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~   60 (62)
T 1uj0_A            5 ARRVRALYDFEAVEDNELTFKHGELITVLDDSD---ANWWQGENHRGTGLFPSNFVTTD   60 (62)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEESC
T ss_pred             CeEEEECccCCCCCcCCcCCCCCCEEEEEEeCC---CCEEEEEECCCEEEechhHEEEe
Confidence            457899999999999999999999999998753   46999999999999999999864

>4f14_A Nebulette; SH3 domain, heart muscle, actin-binding protein-peptide COMP; 1.20A {Homo sapiens} PDB: 1ark_A 1neb_A 3i35_A

Probab=99.60  E-value=2.9e-15  Score=89.82  Aligned_cols=56  Identities=29%  Similarity=0.638  Sum_probs=49.5

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~  127 (137)
                      ...++|+|||.++..++|+|++||+|.|+.+.+   .|||.++.  +|+.|+||.+||+.+
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~W~~g~~~~~g~~G~~P~~yv~~~   63 (64)
T 4f14_A            6 LRTYRAMYDYSAQDEDEVSFRDGDYIVNVQPID---DGWMYGTVQRTGRTGMLPANYIEFV   63 (64)
T ss_dssp             --CEEESSCBCCCSTTBCCBCTTCEEEEEEECS---SSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CEEEEECeeeCCcCCCcCCCCCCCEEEEEEeCC---CCeEEEEECCCCCEEEEeHHHeEEC
Confidence            346899999999999999999999999998864   35999995  899999999999986

>1ujy_A RHO guanine nucleotide exchange factor 6; structural genomics, SH3 domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.59  E-value=6e-16  Score=96.21  Aligned_cols=59  Identities=31%  Similarity=0.556  Sum_probs=52.7

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++.+   .|||.++.+|+.||||.+||+.+..
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~   67 (76)
T 1ujy_A            9 HQLIVKARFNFKQTNEDELSVCKGDIIYVTRVEE---GGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             CCEEEECCSCBCCSSTTSCCBCSSCCEEESSCCS---SSCEEEEETTEEEEECTTTSEECCH
T ss_pred             CCEEEEECccCCcCCCCcccCCCCCEEEEEEecC---CCEEEEEECCCEEEechHHEEECCc
Confidence            3456899999999999999999999999998753   4599999999999999999999864

>2l0a_A STAM-1, signal transducing adapter molecule 1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}

Probab=99.59  E-value=2.2e-15  Score=93.05  Aligned_cols=56  Identities=38%  Similarity=0.718  Sum_probs=50.2

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeee
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  126 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~  126 (137)
                      ...+++|+|+|.++..++|+|++||+|.|+...++   |||+|+..++.||||++||+.
T Consensus        16 ~~~~~~Alydy~a~~~~eLsf~~Gd~i~Vl~~~~~---gWw~g~~~g~~G~fP~~yV~~   71 (72)
T 2l0a_A           16 EARKVRAIYDFEAAEDNELTFKAGEIITVLDDSDP---NWWKGETHQGIGLFPSNFVTA   71 (72)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTCEEEEEEEEET---TEEEEECSSCEEECTTCCEEE
T ss_pred             CCeEEEECCccCCCCCCccCCCCCCEEEEEEecCC---CEEEEEECCCEEEechhhCcc
Confidence            44679999999999999999999999999987543   599999889999999999975

>2dl5_A KIAA0769 protein; SH3 domain, FCHSD2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=2.6e-15  Score=93.87  Aligned_cols=61  Identities=28%  Similarity=0.541  Sum_probs=53.3

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC-CeeEEEcCCCeeecCCCCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-g~~G~~P~~yv~~~~~~~~  132 (137)
                      .+++|+|+|.++..+||+|++||+|.|+++.+  +.+||+++.. |+.||||.+||+.+....+
T Consensus        14 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~--~~~Ww~g~~~~g~~G~~P~~yv~~~~~~~~   75 (78)
T 2dl5_A           14 LTCKVVYSYKASQPDELTIEEHEVLEVIEDGD--MEDWVKARNKVGQVGYVPEKYLQFPTSSGP   75 (78)
T ss_dssp             EEEEECSCBCCCSTTBCCBCSSEEEEEEECCS--SSSEEEEECTTCCEEEEETTTSCCSCCCCS
T ss_pred             cEEEEceeECCCCCCCCCCCCCCEEEEEeccC--CCCcEEEEeCCCCEEEEEhHHEEECCCCCC
Confidence            46899999999999999999999999999853  2469999955 9999999999999876554

>2k2m_A EPS8-like protein 1; alternative splicing, coiled coil, cytoplasm, SH3 domain, signaling protein; NMR {Homo sapiens} PDB: 2rol_A

Probab=99.59  E-value=3e-15  Score=91.21  Aligned_cols=58  Identities=40%  Similarity=0.716  Sum_probs=51.7

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|+|.++..+||+|++||+|.|+++.    .+||.++ .+|+.||||++||+.+..
T Consensus         7 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~----~~Ww~~~~~~g~~G~~P~~yv~~~~~   65 (68)
T 2k2m_A            7 ALKWVLCNYDFQARNSSELSVKQRDVLEVLDDS----RKWWKVRDPAGQEGYVPYNILTPYPA   65 (68)
T ss_dssp             CCCEEEESSCBCCCSSSBCCBCTTCEEEEEECS----SSEEEEECTTSCCEEEEGGGEEECCS
T ss_pred             CCEEEEECccCCCCCCCcccCCCCCEEEEEEcC----CCeEEEEeCCCCEEEEEhhhEEEcCC
Confidence            345799999999999999999999999999873    3599998 679999999999999865

>1s1n_A Nephrocystin 1; beta barrel, cell adhesion; NMR {Homo sapiens}

Probab=99.59  E-value=2.2e-15  Score=91.65  Aligned_cols=58  Identities=34%  Similarity=0.686  Sum_probs=52.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~  128 (137)
                      ....++|+|+|.+...++|+|++||+|.|+.+.+   .|||.++ .+|+.||||.+||+.+.
T Consensus         9 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~g~~G~~P~~yv~~~~   67 (68)
T 1s1n_A            9 TGEEYIAVGDFTAQQVGDLTFKKGEILLVIEKKP---DGWWIAKDAKGNEGLVPRTYLEPYS   67 (68)
T ss_dssp             CCEEEEECSCBCCSSSSCCCBCSSEEEEECSCCS---SSEEEEECSSSCEEEEESTTEEECC
T ss_pred             CCCEEEEcccCCCCCCCcCCCCCCCEEEEEEcCC---CCeEEEEECCCCEEEEehHHeEECc
Confidence            4567899999999999999999999999998753   4699999 89999999999999874

>3h0h_A Proto-oncogene tyrosine-protein kinase FYN; beta barrel, transferase; HET: PG4; 1.76A {Homo sapiens} SCOP: b.34.2.1 PDB: 3h0i_A 3h0f_A*

Probab=99.59  E-value=3.4e-15  Score=91.91  Aligned_cols=57  Identities=35%  Similarity=0.706  Sum_probs=51.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeec
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLY  127 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~  127 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++.+   .+||.++.  +|+.||||.+||+.+
T Consensus        14 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~~g~~G~~P~~yv~~~   72 (73)
T 3h0h_A           14 GVTLFVALYDYEAITEDDLSFHKGEKFQILNSSE---GDWWEARSLTTGETGYIPSNYVAPV   72 (73)
T ss_dssp             TTCEEEESSCBCCSSTTBCCBCTTCEEEEEECSS---SSEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CCEEEEECccCCCCCCCcceEeCCCEEEEEEecC---CCeEEEEECCCCCEEEEEHHHeEEC
Confidence            3457899999999999999999999999998764   35999995  899999999999976

>1ruw_A Myosin-3 isoform, MYO3; SH3 domain, yeast, high-throughput, structural genomics, contractIle protein; 1.80A {Saccharomyces cerevisiae} PDB: 2btt_A 1va7_A

Probab=99.59  E-value=5.9e-15  Score=90.02  Aligned_cols=58  Identities=29%  Similarity=0.564  Sum_probs=50.9

Q ss_pred             cceEEeeccC-CCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC--CeeEEEcCCCeeecCCC
Q psy7685          70 GAVYALYDYE-ANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        70 ~~~~al~dy~-~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~--g~~G~~P~~yv~~~~~~  130 (137)
                      ..++|+|+|. +...++|+|++||+|.|+++.+   .|||.|+..  |+.||||++||+.+...
T Consensus         3 ~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~---~~W~~g~~~~~g~~G~~P~~yv~~~~~~   63 (69)
T 1ruw_A            3 PKFEAAYDFPGSGSSSELPLKKGDIVFISRDEP---SGWSLAKLLDGSKEGWVPTAYMTPYKDT   63 (69)
T ss_dssp             SEEEESSCBCCCSCTTBCCBCTTCEEEEEEECT---TSEEEEEETTSSCEEEEEGGGEEECCSC
T ss_pred             cEEEEccccCCCCCCCcccCCCCCEEEEEEecC---CCeEEEEECCCCCEEEEehHHeEEcCCc
Confidence            4689999996 9999999999999999999864   459999955  99999999999988653

>1wxb_A Epidermal growth factor receptor pathway substrate 8-like protein; SH3, EPS8, EPS8L2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=3.3e-15  Score=91.02  Aligned_cols=58  Identities=40%  Similarity=0.708  Sum_probs=51.8

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|+|.++..+||+|++||+|.|+++.    .+||.++ .+|+.||||.+||+.+..
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~----~~Ww~~~~~~g~~G~~P~~yv~~~~~   64 (68)
T 1wxb_A            6 SGKYVKILYDFTARNANELSVLKDEVLEVLEDG----RQWWKLRSRSGQAGYVPCNILGEASG   64 (68)
T ss_dssp             SCCCEECSSCBCCSSSSBCCBCTTCEEEEEECS----SSEEEEECTTSCEEEEETTTCCBCCC
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEcC----CCEEEEEECCCCEEEEEHHHeEECCC
Confidence            345799999999999999999999999999873    3599999 689999999999998864

>1zuu_A BZZ1 protein; SH3 domain, unknown function; 0.97A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.59  E-value=2.1e-15  Score=88.93  Aligned_cols=55  Identities=20%  Similarity=0.405  Sum_probs=48.4

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeee
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGL  126 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~  126 (137)
                      .+++|+|+|.++.++||+|++||+|.|++..+  +.|||.++.  +|+.||||++||+.
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~--~~~W~~g~~~~~g~~G~~P~~yv~~   58 (58)
T 1zuu_A            2 MENKVLYAYVQKDDDEITITPGDKISLVARDT--GSGWTKINNDTTGETGLVPTTYIRI   58 (58)
T ss_dssp             -CCEECSCBCCCSTTBCCBCTTCCEEEEECCS--SSSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEEEeeeECCcCCCcccCCCCCEEEEeEcCC--CCCCEEEEECCCCCEEEEEHHHEEC
Confidence            35899999999999999999999999998754  246999996  99999999999973

>2enm_A Sorting nexin-9; SH3-like barrel, protein transport, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.59  E-value=5.8e-15  Score=91.89  Aligned_cols=61  Identities=25%  Similarity=0.454  Sum_probs=53.5

Q ss_pred             cceEEeeccCCC-CCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCCCC
Q psy7685          70 GAVYALYDYEAN-NTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        70 ~~~~al~dy~~~-~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      .+++|+|+|.++ ..++|+|++||+|.|+.+..  +.|||.++ .+|+.||||.+||+.+.....
T Consensus        10 ~~~~al~dy~~~~~~~eLs~~~Gd~i~v~~~~~--~~gW~~g~~~~g~~G~~P~~yv~~~~~~~~   72 (77)
T 2enm_A           10 TKARVMYDFAAEPGNNELTVTEGEIITVTNPNV--GGGWLEGKNNKGEQGLVPTDYVEILPNDGK   72 (77)
T ss_dssp             EEEEESSCCCCCTTSSBCCCCTTCEEEEEESCC--SSSEEEEECTTCCEEEEETTTEEEECCCCC
T ss_pred             cEEEECccCCCCCCCCeecCCCCCEEEEeEccC--CCCeEEEEECCCCEEEeehHHeEECCCCCC
Confidence            579999999999 99999999999999998742  24699999 899999999999999976543

>2yuq_A Tyrosine-protein kinase ITK/TSK; T-cell-specific kinase, tyrosine-protein kinase LYK, kinase EMT, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=5.2e-15  Score=93.89  Aligned_cols=62  Identities=32%  Similarity=0.590  Sum_probs=53.7

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ....++|+|+|.++..++|+|++||+|.|+.+.+   .+||.++ .+|+.|+||++||+.+.....
T Consensus        18 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~~~~~~g~~G~~P~~yv~~~~~~~l   80 (85)
T 2yuq_A           18 EETVVIALYDYQTNDPQELALRRNEEYCLLDSSE---IHWWRVQDRNGHEGYVPSSYLVEKSPNNL   80 (85)
T ss_dssp             SSCEEEESSCCCCSCSSBCCCCBTEEEEEEECCS---SSEEEEECSSSCEEEEETTTCEECCCCSC
T ss_pred             CCeEEEECcCCCCCCCCcCCCCCCCEEEEEEecC---CCeEEEEECCCCEEEEehHHeEEccCCCc
Confidence            3456999999999999999999999999998864   3599998 789999999999999854433

>4esr_A Jouberin; AHI-1, AHI1, AHI-1 SH3 domain, SH3 domain, dynamin-2, protei binding, chronic myeloid leukemia; 1.53A {Homo sapiens}

Probab=99.58  E-value=3.9e-15  Score=90.76  Aligned_cols=58  Identities=38%  Similarity=0.776  Sum_probs=51.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe-CCeeEEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~-~g~~G~~P~~yv~~~~  128 (137)
                      ....++|+|||.+...++|+|++||+|.|+.+.+   .|||.|+. +|+.|+||++||+.+.
T Consensus         5 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~g~~G~~P~~yv~~~~   63 (69)
T 4esr_A            5 TAPTVVALYDYTANRSDELTIHRGDIIRVFFKDN---EDWWYGSIGKGQEGYFPANHVASET   63 (69)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEECS---SSEEEEEEETTEEEEEEGGGEEEHH
T ss_pred             ccCEEEECccCCCCCcCcCCCCCCCEEEEEEecC---CCeEEEEeCCCCEEEEchHHeEECc
Confidence            3457999999999999999999999999998864   35999995 9999999999999764

>1spk_A RSGI RUH-010, riken cDNA 1300006M19; structural genomics, SH3 domain, five-stranded barrel, mouse cDNA; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.58  E-value=3e-15  Score=92.08  Aligned_cols=62  Identities=21%  Similarity=0.441  Sum_probs=52.4

Q ss_pred             CCcceEEeeccCC-CCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC--CeeEEEcCCCeeecCCCC
Q psy7685          68 NNGAVYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        68 ~~~~~~al~dy~~-~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~--g~~G~~P~~yv~~~~~~~  131 (137)
                      ...+++|+|+|.+ +..++|+|++||+|.|+.+..  +.|||+|+..  |+.||||.+||+.+....
T Consensus         6 ~~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~--~~gWw~g~~~~~g~~G~fP~~yv~~~~~~~   70 (72)
T 1spk_A            6 SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEE--KDGWLYGEHDTTKARGWFPSSYTKLLSGPS   70 (72)
T ss_dssp             CSCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSC--BTTEEEEEETTTCCEEEEEGGGCEECSSCC
T ss_pred             CceEEEEeeeeCCCCCCCCCcCCCCCEEEEeEccC--CCCcEEEEECCCCCEEEEehHHeEECCCCC
Confidence            4467999999995 899999999999999997622  3469999965  999999999999987543

>2oaw_A Spectrin alpha chain, brain; SH3 domain, chimera, structural protein; 1.90A {Gallus gallus} PDB: 2rot_A 2rmo_A 2kr3_A

Probab=99.58  E-value=2.6e-15  Score=90.35  Aligned_cols=55  Identities=27%  Similarity=0.725  Sum_probs=48.8

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC--------CeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--------NKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~--------g~~G~~P~~yv~~~  127 (137)
                      ..++|+|+|.++..++|+|++||+|.|+.+.+   .|||.|+..        |+.||||++||+.+
T Consensus         2 ~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~~~~g~~~g~~G~~P~~yv~~l   64 (65)
T 2oaw_A            2 ELVLALYDYQEKSPREVTMKKGDILTLLNSTN---KDWWKVEVKITVNGKTYERQGFVPAAYVKKL   64 (65)
T ss_dssp             EEEEECSCBCCSSTTBCCBCTTCEEEEEECCS---SSEEEEEEEEEETTEEEEEEEEEEGGGEEEC
T ss_pred             cEEEEcccCCccCCCCCCCCCCCEEEEEEcCC---CCEEEEEEccccCCCcCCcEEEEchHHeEEc
Confidence            35899999999999999999999999999754   459999944        88999999999876

>2o9s_A Ponsin; SH3 domain, signaling protein; 0.83A {Homo sapiens} PDB: 2o31_A 2o9v_A 2o2w_A

Probab=99.58  E-value=4e-15  Score=90.28  Aligned_cols=58  Identities=26%  Similarity=0.621  Sum_probs=50.8

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC--CeeEEEcCCCeeecCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYPR  129 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~--g~~G~~P~~yv~~~~~  129 (137)
                      ..+++|+|+|.++..++|+|++||+|.|+++.+   .|||.|+..  |+.|+||++||+.+..
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~~g~~G~~P~~yv~~~~~   65 (67)
T 2o9s_A            6 TGEAIAKFNFNGDTQVEMSFRKGERITLLRQVD---ENWYEGRIPGTSRQGIFPITYVDVIKR   65 (67)
T ss_dssp             SEEEEECSCBCCSSTTBCCBCTTCEEEEEEECS---SSEEEEECTTSSCEEEEEGGGEEEEEC
T ss_pred             CEEEEECccCCcCCcCccCCCCCCEEEEEEecC---CCEEEEEECCCCCEEEEChHHeEECCC
Confidence            356899999999999999999999999999754   359999954  5999999999998853

>2cuc_A SH3 domain containing ring finger 2; structural genomics, ring finger 2 containing protein, NPPSFA; NMR {Mus musculus}

Probab=99.58  E-value=3.7e-15  Score=91.03  Aligned_cols=60  Identities=27%  Similarity=0.400  Sum_probs=53.4

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++.++   |||.++  .+|+.||||.+||+.+...
T Consensus         6 ~~~~~~al~~y~~~~~~eLs~~~Gd~i~v~~~~~~---~Ww~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2cuc_A            6 SGNMFVALHTYSAHRPEELDLQKGEGIRVLGKYQD---GWLKGLSLLTGRTGIFPSDYVIPVSGP   67 (70)
T ss_dssp             SSCCEECCSCBCCCSTTBCCBCTTCEEEEEEEEET---TEEEEEETTTCCEEEEEGGGCEECCCT
T ss_pred             CCcEEEECeeECcCCCCcCCCCCCCEEEEEEecCC---CeEEEEECCCCCEEEEchHHeEECcCC
Confidence            34579999999999999999999999999998643   599999  7899999999999998653

>2kxd_A 11-MER peptide, SH3 domain of spectrin alpha CHAI; alpha spectrin SH3 domain, SPC-S19P20S circular permutant, S protein; NMR {Synthetic}

Probab=99.58  E-value=4e-15  Score=91.80  Aligned_cols=56  Identities=23%  Similarity=0.571  Sum_probs=50.4

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      .++|+|+|.+ ..+||+|++||+|.|+++.+   .|||.|+.+|+.|+||.+||+.+...
T Consensus         2 ~a~alydy~~-~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~   57 (73)
T 2kxd_A            2 GAPPLPPYSA-GGREVTMKKGDILTLLNSTN---KDWWKVEVNDRQGFVPAAYVKKLDSG   57 (73)
T ss_dssp             CCCCCCSSCC-CSCCCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEECCSS
T ss_pred             eEEEeeeeCC-CCCEeeEcCCCEEEEEEecC---CCEEEEEECCCEEEEehHHeEEcCCC
Confidence            3789999998 89999999999999999864   45999999999999999999998654

>2ct3_A Vinexin; SH3 domian, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=6.7e-15  Score=89.88  Aligned_cols=60  Identities=25%  Similarity=0.460  Sum_probs=52.9

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~  130 (137)
                      .+..++|+|+|.++..++|+|++||+|.|+++.+   .|||+++.  +++.||||.+||+.+...
T Consensus         6 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~gW~~g~~~~~g~~G~~P~~yv~~~~~~   67 (70)
T 2ct3_A            6 SGTPYRAMYQYRPQNEDELELREGDRVDVMQQCD---DGWFVGVSRRTQKFGTFPGNYVAPVSGP   67 (70)
T ss_dssp             CCEEEEESSCBCCSSTTBCCBCTTEEEEEEEECS---SSCEEEEESSSCCEEEECTTTEEETTCS
T ss_pred             CCcEEEECccCCcCCcCCccCCCCCEEEEEEECC---CCEEEEEECCCCCEEEechHHeEECCCC
Confidence            4567999999999999999999999999999864   35999994  599999999999998654

>1wx6_A Cytoplasmic protein NCK2; SH3 domain, structural genomics, signal transduction, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens}

Probab=99.58  E-value=3.3e-15  Score=95.90  Aligned_cols=61  Identities=30%  Similarity=0.593  Sum_probs=53.0

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~  130 (137)
                      ..+++|+|+|.++..+||+|++||+|.|+++.+. +.|||+++ .+|+.||||.+||+.+...
T Consensus        17 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~~-~~~Ww~g~~~~g~~G~~P~~yv~~~~~~   78 (91)
T 1wx6_A           17 LHVVQTLYPFSSVTEEELNFEKGETMEVIEKPEN-DPEWWKCKNARGQVGLVPKNYVVVLSDG   78 (91)
T ss_dssp             CEEEEESSCCCCSSSSBCCCCTTCEEEEEECCSS-CTTEEEEECTTCCEEEEEGGGEEEEEES
T ss_pred             cEEEEEeecCCcCCCCcccCCCCCEEEEEECCCC-CCCcEEEEeCCCCEEEEchHHEEECCCc
Confidence            3569999999999999999999999999997311 34699999 8899999999999998654

>2egc_A SH3 and PX domain-containing protein 2A; SH3 domain, KIAA0418 protein, SH3MD1, SH3 multiple domains 1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=6.9e-15  Score=91.27  Aligned_cols=57  Identities=25%  Similarity=0.595  Sum_probs=50.3

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe----CCeeEEEcCCCeeecCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL----NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~----~g~~G~~P~~yv~~~~~  129 (137)
                      ...++|+|+|.++ .++|+|++||+|.|+++.+   .|||+++.    +|+.||||.+||+.++.
T Consensus        10 ~~~~~alydy~~~-~~eLs~~~Gd~i~vl~~~~---~gWw~g~~~~~~~g~~G~~P~~yv~~~~~   70 (75)
T 2egc_A           10 KDVYVSIADYEGD-EETAGFQEGVSMEVLERNP---NGWWYCQILDGVKPFKGWVPSNYLEKKNS   70 (75)
T ss_dssp             CEEEEECSCBCCC-SSSCCBCTTCEEEECEECT---TSEEEEEECCSSSCEEEEEEGGGEEECCS
T ss_pred             CeEEEECCCcCCC-CCcCCCCCCCEEEEEEcCC---CCeEEEEeCCCCCCcEEEEehHHCEECCC
Confidence            4568999999999 9999999999999999864   35999994    47999999999999865

>1zuy_A Myosin-5 isoform; SH3 domain, contractIle protein; 1.39A {Saccharomyces cerevisiae} PDB: 1yp5_A

Probab=99.58  E-value=4.7e-15  Score=87.35  Aligned_cols=53  Identities=32%  Similarity=0.579  Sum_probs=47.6

Q ss_pred             ceEEeecc-CCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC--CeeEEEcCCCeee
Q psy7685          71 AVYALYDY-EANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGL  126 (137)
Q Consensus        71 ~~~al~dy-~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~--g~~G~~P~~yv~~  126 (137)
                      .++|+|+| .+...++|+|++||+|.|+.+.+   .|||.|+..  |+.|+||.+||+.
T Consensus         2 ~~~al~d~~~~~~~~eLs~~~Gd~i~v~~~~~---~gW~~g~~~~~g~~G~~P~~yv~~   57 (58)
T 1zuy_A            2 MFEAAYDFPGSGSPSELPLKKGDVIYITREEP---SGWSLGKLLDGSKEGWVPTAYMKP   57 (58)
T ss_dssp             EEEESSCBCCCSCTTBCCBCTTCEEEEEEECT---TSEEEEEESSCSCEEEEEGGGEEC
T ss_pred             EEEEecccCCCCCCCcCCCCCCCEEEEEEecC---CCeEEEEECCCCCEEEecHHHEEE
Confidence            58999999 89999999999999999999864   459999954  9999999999975

>1i07_A Epidermal growth factor receptor kinase substrate EPS8; hormone/growth factor; 1.80A {Mus musculus} SCOP: b.34.2.1 PDB: 1aoj_A 1i0c_A

Probab=99.58  E-value=2.5e-15  Score=89.25  Aligned_cols=55  Identities=27%  Similarity=0.620  Sum_probs=50.0

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      .++|+|+|.+...++|+|++||+|.|+.. ++   +||.++ .+|+.||||++||+.+..
T Consensus         3 ~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~---~Ww~~~~~~g~~G~~P~~yv~~~~~   58 (60)
T 1i07_A            3 YAKSKYDFVARNSSELSVMKDDVLEILDD-RR---QWWKVRNASGDSGFVPNNILDIMRT   58 (60)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEECGG-GC---CEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             EEEECccCCCCCCCcccCCCCCEEEEEEc-CC---CeEEEEECCCCEEEEEHHHeEEccC
Confidence            58999999999999999999999999987 33   599999 789999999999999864

>1i1j_A Melanoma derived growth regulatory protein; SH3 subdomain, hormone/growth factor complex; 1.39A {Homo sapiens} SCOP: b.34.2.1 PDB: 1k0x_A 1hjd_A

Probab=99.58  E-value=2e-15  Score=100.19  Aligned_cols=62  Identities=23%  Similarity=0.385  Sum_probs=51.7

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC--------CeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--------NKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~--------g~~G~~P~~yv~~~~~~  130 (137)
                      ...++|+|||.++..++|+|++||+|.|+.+..+.+.+||.|+..        |+.||||+|||+.+...
T Consensus        22 ~~~~~Alydy~a~~~~ELsf~~GDiI~Vl~k~~~~g~dWW~G~~~~~~~~~~~g~~G~fPsnYV~~~~~~   91 (108)
T 1i1j_A           22 ISMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTL   91 (108)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEEC
T ss_pred             eeEEEECCccCCCCCCccccCCCCEEEEEEecCCCCCCEEEEEECCccccCCCCCEEEEchhHEEEcccc
Confidence            346899999999999999999999999998832112239999955        89999999999988643

>4ag1_C Fynomer; hydrolase-de novo protein complex, inhibitor, serine proteas; 1.40A {Synthetic construct} PDB: 4afz_C 4ag2_C* 4afq_C* 4afs_C 4afu_C 1azg_B 1nyf_A 1nyg_A 1a0n_B 3ua7_A 3ua6_A 1fyn_A 1m27_C* 1shf_A 1zbj_A 1efn_A 1avz_C 1nlo_C* 1nlp_C* 1qwe_A ...

Probab=99.58  E-value=5.3e-15  Score=93.80  Aligned_cols=59  Identities=32%  Similarity=0.646  Sum_probs=52.8

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~  130 (137)
                      ...++|+|+|.++..++|+|++||+|.|+.+.+   .|||.|+.  +|+.|+||.+||+.+...
T Consensus         6 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~~---~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   66 (84)
T 4ag1_C            6 VTLFVALYDYNATRWTDLSFHKGEKFQILEFGP---GDWWEARSLTTGETGYIPSNYVAPVDSI   66 (84)
T ss_dssp             CCEEEESSCBCCSBTTBCCBCTTCEEEEEECCS---SSEEEEEETTTCCEEEEEGGGEEETTTC
T ss_pred             CEEEEEcccCCCCCCCcccccCCCEEEEEEecC---CCeEEEEECCCCCEEEEehHHeEECCCc
Confidence            457999999999999999999999999998764   45999996  899999999999998754

>2eqi_A Phospholipase C, gamma 2; SH3 domain, PLCG2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.58  E-value=4.7e-15  Score=90.44  Aligned_cols=60  Identities=32%  Similarity=0.544  Sum_probs=51.8

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCee-EEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~-G~~P~~yv~~~~~~  130 (137)
                      ....++|+|+|.++..++|+|++||+|.|+.+.+   .|||+++..+.. ||||.+||+.+...
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~~~~G~~P~~yv~~~~~~   66 (69)
T 2eqi_A            6 SGRTVKALYDYKAKRSDELTFCRGALIHNVSKEP---GGWWKGDYGTRIQQYFPSNYVEDISGP   66 (69)
T ss_dssp             CCCEEEESSCBCCCSSSCCCBCTTCEEESCCCCS---SSCEEEEETTEEEEEECGGGEEECCSC
T ss_pred             CCcEEEECeeECCCCcCccCCCCCCEEEEEEcCC---CCeEEEEECCCCEEEEchHHcEECccC
Confidence            3457999999999999999999999999998754   369999976666 99999999998653

>2o2o_A SH3-domain kinase-binding protein 1; CIN85, protein binding; NMR {Homo sapiens}

Probab=99.57  E-value=1.5e-15  Score=98.02  Aligned_cols=62  Identities=27%  Similarity=0.492  Sum_probs=54.6

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      ....+++|+|+|.++..++|+|++||+|.|+.+.+   .|||.|+.+|+.||||++||+.+....
T Consensus        16 ~~~~~~~Alydy~a~~~~eLsf~~Gd~i~V~~~~~---~gWw~g~~~g~~G~fPsnyV~~~~~~~   77 (92)
T 2o2o_A           16 RRRRRCQVAFSYLPQNDDELELKVGDIIEVVGEVE---EGWWEGVLNGKTGMFPSNFIKELSGES   77 (92)
T ss_dssp             CSSCEEEECSCBCCCSSSCCCBCSSCEEECCCGGG---SSCBCCEETTEECCBCSSSEECCSSCS
T ss_pred             CCCeEEEEccccCCCCCccccccCCCEEEEeEecC---CCEEEEEECCeEEEeehHHEEECCCCC
Confidence            34567999999999999999999999999998754   459999999999999999999987543

>2kxc_A Brain-specific angiogenesis inhibitor 1-associate 2-like protein 1; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Homo sapiens}

Probab=99.57  E-value=3.8e-15  Score=90.36  Aligned_cols=59  Identities=22%  Similarity=0.465  Sum_probs=50.2

Q ss_pred             CCcceEEeeccCC-CCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC--CeeEEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~-~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~--g~~G~~P~~yv~~~~  128 (137)
                      ...+++|+|+|.+ +..++|+|++||+|.|+.+..  +.|||.|+..  |+.||||++||+.+.
T Consensus         5 ~~~~~~al~dy~a~~~~~eLs~~~Gd~i~v~~~~~--~~~Ww~g~~~~~g~~G~~P~~yv~~~~   66 (67)
T 2kxc_A            5 KKQKVKTIFPHTAGSNKTLLSFAQGDVITLLIPEE--KDGWLYGEHDVSKARGWFPSSYTKLLE   66 (67)
T ss_dssp             CCCEEEESSCBCCSSCSSBCCBCTTCEEEESSSSC--BTTEEEEEESSSCCEEEEEGGGEEESC
T ss_pred             CCEEEEEeecCCCCCCCCCCcCCCCCEEEEeECCC--CCCcEEEEECCCCCEEEEehHHeEECC
Confidence            3457999999995 899999999999999997522  3469999955  999999999999874

>2d8j_A FYN-related kinase; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.57  E-value=6.8e-15  Score=91.46  Aligned_cols=60  Identities=28%  Similarity=0.627  Sum_probs=52.7

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC---Cee------EEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN---NKE------GYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~---g~~------G~~P~~yv~~~~~~  130 (137)
                      ....++|+|||.+...++|+|++||+|.|+++.+   .+||.++..   |+.      ||||.+||+.+...
T Consensus         6 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~~~g~~~~~~~~G~~P~~yv~~~~~~   74 (77)
T 2d8j_A            6 SGQYFVALFDYQARTAEDLSFRAGDKLQVLDTSH---EGWWLARHLEKKGTGLGQQLQGYIPSNYVAEDSGP   74 (77)
T ss_dssp             CCEEEEESSCBCCSSSSBCCBCTTCCEEEEECCS---SSEEEEEECSSCCSSCCCCSEEEEETTTEEECCCC
T ss_pred             CCCEEEEccCCCCCCCCccCCCCCCEEEEEECCC---CCeEEEEECCCCCcCcccCCceEECHHHeeEcCCc
Confidence            4567999999999999999999999999999864   459999954   888      99999999998754

>2yup_A Vinexin; sorbin and SH3 domain-containing protein 3, SH3-containing adapter molecule 1, SCAM-1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=4.5e-15  Score=95.12  Aligned_cols=60  Identities=25%  Similarity=0.547  Sum_probs=52.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC--CeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--NKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~--g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|+|.++..+||+|++||+|.|+.+.+   .|||+|+..  |+.||||.+||+.+...
T Consensus        16 ~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~~~g~~G~fP~~yv~~~~~~   77 (90)
T 2yup_A           16 EYGEAVAQYTFKGDLEVELSFRKGEHICLIRKVN---ENWYEGRITGTGRQGIFPASYVQVSREP   77 (90)
T ss_dssp             GSEEEEECSCCCCCSSSBCCCCTTCEEEESSCCC---SSEEEEECTTTCCEEEEEGGGEEEEECC
T ss_pred             cceEEEEeecCCcCCcCcCCCCCCCEEEEEEEcC---CCeEEEEECCCCCEEEEehHHeEEcCCC
Confidence            3457899999999999999999999999998753   459999965  99999999999998654

>2d8h_A SH3YL1 protein; SH3 domain, hypothetical protein SH3YL1, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=3.3e-15  Score=93.73  Aligned_cols=62  Identities=31%  Similarity=0.606  Sum_probs=53.7

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...+++|+|||.++..+||+|++||+|.|+.+.+. +.|||+++.+|+.||||.+||+.+...
T Consensus        16 ~~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~~-~~~Ww~g~~~g~~G~~P~~yv~~~~~~   77 (80)
T 2d8h_A           16 QPIEVTALYSFEGQQPGDLNFQAGDRITVISKTDS-HFDWWEGKLRGQTGIFPANYVTMNSGP   77 (80)
T ss_dssp             SCEEEECSSCEECSSTTBCEECTTCEEEEEECCSC-SSSEEEEEETTEEEEEEGGGCCBCCCC
T ss_pred             CCEEEEECccCCcCCCCeeeEcCCCEEEEeECcCC-CCCeEEEEECCEEEEEchhHeEEcCCC
Confidence            34568999999999999999999999999998531 246999999999999999999987653

>1gbq_A GRB2; complex (signal transduction/peptide), SH3 domain; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 1gbr_A 2gbq_A 3gbq_A 4gbq_A

Probab=99.57  E-value=3.3e-15  Score=92.46  Aligned_cols=59  Identities=36%  Similarity=0.750  Sum_probs=51.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      .+.+++|+|+|.++..+||+|++||+|.|+++..  +.+||.++.+|+.|+||++||+.+.
T Consensus         8 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~--~~~Ww~g~~~g~~G~~P~~yv~~~~   66 (74)
T 1gbq_A            8 GSMEAIAKYDFKATADDELSFKRGDILKVLNEEC--DQNWYKAELNGKDGFIPKNYIEMKP   66 (74)
T ss_dssp             --CEEEESSCBCCSSTTBCCBCTTCEEECCBCSS--CSSEEEEEETTEEEEEEGGGEEEEC
T ss_pred             CCeEEEECccCCCCCCCeeeEcCCCEEEEeEecC--CCCEEEEEECCCEEEEehHhEEEcC
Confidence            3456999999999999999999999999998753  3469999999999999999999875

>2ke9_A Caskin-2; SH3 domain, ANK repeat, cytoplasm, phosphoprotein, protein binding; NMR {Homo sapiens}

Probab=99.57  E-value=3e-15  Score=94.80  Aligned_cols=60  Identities=22%  Similarity=0.494  Sum_probs=50.9

Q ss_pred             cCCcceEEeecc-CCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC------CeeEEEcCCCeeecCC
Q psy7685          67 LNNGAVYALYDY-EANNTDELSFKTGECIIVLRKGDENEREWWWSKLN------NKEGYVPRNLLGLYPR  129 (137)
Q Consensus        67 ~~~~~~~al~dy-~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~------g~~G~~P~~yv~~~~~  129 (137)
                      ....+++|+||| .++..++|+|++||+|.|+++.++   |||.|+..      |+.|+||++||+.+..
T Consensus        16 ~~~~~~~Alydy~~a~~~~eLsf~~GDiI~V~~~~~~---gWw~G~~~~~~~~tg~~G~fPsnyV~~~~~   82 (83)
T 2ke9_A           16 RGSLKVRALKDFWNLHDPTALNVRAGDVITVLEQHPD---GRWKGHIHESQRGTDRIGYFPPGIVEVVSK   82 (83)
T ss_dssp             -CCEEEEESSCBCCCSCTTBCCBCTTCEEEESCSSCS---SCEEEEECCSSTTSCCCEEECGGGEESSCC
T ss_pred             CCCeEEEEccccCCCCCCCcccccCCCEEEEEEecCC---CeEEEEECCCCCCCCCEEEechHHEEECCC
Confidence            345679999999 789999999999999999987643   59999943      7999999999998753

>1x6b_A RHO guanine exchange factor (GEF) 16; SH3 domain, neuroblastoma, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=4.3e-15  Score=93.06  Aligned_cols=59  Identities=15%  Similarity=0.432  Sum_probs=52.7

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCC
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~  129 (137)
                      ....+++|+|+|.++..+||+|++||+|.|+++ ++   |||+++.  +|+.||||.+||+.+..
T Consensus        15 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~-~~---gW~~g~~~~~g~~G~fP~~yv~~~~~   75 (79)
T 1x6b_A           15 GDLPQVEITKAFFAKQADEVTLQQADVVLVLQQ-ED---GWLYGERLRDGETGWFPEDFARFISG   75 (79)
T ss_dssp             SSCCEEEESSCCCCCSSSBCCCCTTEEEEEEEE-ET---TEEEEEETTTCCEEEECGGGCEEEES
T ss_pred             CCCCEEEECeeECCCCcCCcCCCCCCEEEEEEe-CC---CEEEEEECCCCCEEEEchHHEEECCC
Confidence            345679999999999999999999999999998 43   5999996  89999999999999865

>2v1r_A Peroxisomal membrane protein PAS20; protein transport, translocation, transmembrane, peptide COM structural genomics, peroxisome; 2.1A {Saccharomyces cerevisiae} SCOP: b.34.2.1

Probab=99.56  E-value=4.5e-15  Score=92.96  Aligned_cols=62  Identities=31%  Similarity=0.677  Sum_probs=51.8

Q ss_pred             CCcceEEeeccCCCCCC-CCCCCCCCEEEEEEecCC--CCCCeEEEEe-CCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTD-ELSFKTGECIIVLRKGDE--NEREWWWSKL-NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~-eLs~~~Gd~i~vl~~~~~--~~~gWw~g~~-~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|+|.++..+ +|+|++||+|.|+.+.+.  ...|||.|+. +|+.||||.+||+.+..
T Consensus        13 ~~~~~~alydy~~~~~~~eLs~~~Gd~i~v~~~~~~~~~~~~Ww~g~~~~g~~G~~P~~yv~~~~~   78 (80)
T 2v1r_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKR   78 (80)
T ss_dssp             GCEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC--
T ss_pred             cCEEEEECccCCCCCCCCEecCCCCCEEEEEECCCCCCCCCCcEEEEeCCCCeEEEEHHHeEEcCC
Confidence            34569999999999999 999999999999998643  0126999996 89999999999999854

>1x6g_A Megakaryocyte-associated tyrosine-protein kinase; MATK, CTK, HYL, SH3 domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=91.55  Aligned_cols=61  Identities=16%  Similarity=0.351  Sum_probs=52.8

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|||.+...++|+|++||+|.|+.+.++  .+||.++.  +|+.|+||.+||+.....
T Consensus        16 ~~~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~--~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   78 (81)
T 1x6g_A           16 PGTQCITKCEHTRPKPGELAFRKGDVVTILEACEN--KSWYRVKHHTSGQEGLLAAGALRERSGP   78 (81)
T ss_dssp             TTCEEEESSCBSSCCTTCCCBCTTCEEEEEECCCS--SSEEEEEETTTCCEEEEEGGGEEECCCS
T ss_pred             CCCEEEECCCCCcCCCCCCCCCCCCEEEEEeccCC--CCeEEEEeCCCCCEEEEehHHEEEcccc
Confidence            45579999999999999999999999999987543  36999993  799999999999987654

>1jqq_A PEX13P, peroxisomal membrane protein PAS20, PAS20P, roxin-13; compact beta-barrel of five anti-parrallel beta-strands; 2.65A {Saccharomyces cerevisiae} SCOP: b.34.2.1 PDB: 1n5z_A

Probab=99.56  E-value=8.1e-15  Score=94.22  Aligned_cols=63  Identities=30%  Similarity=0.638  Sum_probs=53.7

Q ss_pred             CCcceEEeeccCCCCCC-CCCCCCCCEEEEEEecCCC--CCCeEEEEe-CCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTD-ELSFKTGECIIVLRKGDEN--EREWWWSKL-NNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~-eLs~~~Gd~i~vl~~~~~~--~~gWw~g~~-~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|+|.++..+ +|+|++||+|.|+.+.+..  +.|||.|+. +|+.||||.+||+.+...
T Consensus        13 ~~~~~~alydy~~~~~~~eLsf~~Gd~i~v~~~~~~~~~~~gWw~g~~~~g~~G~~P~~yv~~~~~~   79 (92)
T 1jqq_A           13 KLEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEIIKRR   79 (92)
T ss_dssp             TCEEEEESSBBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEEETTSCEEEEEGGGEEECCCC
T ss_pred             cCEEEEECccCCCCCCCCCcCCCCCCEEEEEECCCCCCCCCCCeEEEeCCCCEEEEehHHeEECCCC
Confidence            34569999999999999 9999999999999986430  126999996 899999999999999654

>1wie_A RIM binding protein 2; beta barrel, KIAA0318 protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.55  E-value=3.7e-15  Score=96.72  Aligned_cols=60  Identities=22%  Similarity=0.403  Sum_probs=51.9

Q ss_pred             CCcceEEeeccCCCC------CCCCCCCCCCEEEEE-EecCCCCCCeEEEEe-CCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANN------TDELSFKTGECIIVL-RKGDENEREWWWSKL-NNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~------~~eLs~~~Gd~i~vl-~~~~~~~~gWw~g~~-~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|||.++.      .+||+|++||+|.|+ ...   +.|||.|+. +|+.||||.+||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~---~~gWw~g~~~~g~~G~~Psnyv~~~~~~   83 (96)
T 1wie_A           16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMD---EDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCC---SSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CCcEEEECCccCCCcccCCCCCCeeeECCCCEEEEeEecC---CCCEEEEEECCCCEEEEchHHEEEcCCC
Confidence            345689999999988      999999999999999 554   346999996 999999999999998654

>2rf0_A Mitogen-activated protein kinase kinase kinase 10; MAP3K10, MLK2, SH3 domain, TKL kinase, MKN28, structural GEN structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=99.55  E-value=9.4e-15  Score=93.71  Aligned_cols=59  Identities=27%  Similarity=0.592  Sum_probs=50.1

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCC--CCCCeEEEEe-CCeeEEEcCCCeee
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDE--NEREWWWSKL-NNKEGYVPRNLLGL  126 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~--~~~gWw~g~~-~g~~G~~P~~yv~~  126 (137)
                      ....++|+|||.++..+||+|++||+|.|+++...  .+.|||.|+. +|+.||||++||+.
T Consensus        28 ~~~~~~Alydy~a~~~~ELsf~~GD~I~Vl~~~~~~~~~~gWw~g~~~~g~~G~fP~nyV~p   89 (89)
T 2rf0_A           28 AGPVWTAVFDYEAAGDEELTLRRGDRVQVLSQDCAVSGDEGWWTGQLPSGRVGVFPSNYVAP   89 (89)
T ss_dssp             CCCEEEECSCBCCSSTTBCCBCTTCEEEEEECCHHHHSSTTEEEEECTTCCEEEEEGGGEEC
T ss_pred             CCcEEEECCccCCCCCCccccCCCCEEEEEeccCCcccCCCEEEEEECCCCEEEEcHHHCcC
Confidence            45679999999999999999999999999987410  0246999996 99999999999973

>1udl_A Intersectin 2, KIAA1256; beta barrel, SH3 domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.55  E-value=5.7e-15  Score=96.07  Aligned_cols=64  Identities=38%  Similarity=0.676  Sum_probs=55.8

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSA  134 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~~  134 (137)
                      ...+++|+|+|.++..+||+|++||+|.|+.+.+   .|||.++.+|+.||||.+||+.+....+.+
T Consensus        33 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~~~~s   96 (98)
T 1udl_A           33 PVCQVIAMYDYAANNEDELSFSKGQLINVMNKDD---PDWWQGEINGVTGLFPSNYVKMTTDSSGPS   96 (98)
T ss_dssp             CSEEEEESSCCCCSSTTSCCCCTTCEEEECBCCS---SSEEBCBSSSCBCCEETTSEEECCCCSSCC
T ss_pred             CceEEEECCCCCCCCCCccCCcCCCEEEEEEecC---CCEEEEEECCcEEEEehHHeEEcCCCCCCC
Confidence            3456899999999999999999999999998753   459999999999999999999997765543

>2oi3_A Tyrosine-protein kinase HCK; human HCK, SH3, SRC-type tyrosine kinase, transferase; NMR {Homo sapiens} PDB: 2oj2_A 4hck_A 5hck_A

Probab=99.54  E-value=1.6e-14  Score=91.61  Aligned_cols=58  Identities=40%  Similarity=0.786  Sum_probs=52.1

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|+|.++..++|+|++||+|.|+++. +   |||+|+.  +|+.||||.+||+.+..
T Consensus        24 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~-~---~Ww~g~~~~~g~~G~~P~~yv~~~~~   83 (86)
T 2oi3_A           24 EDIIVVALYDYEAIHHEDLSFQKGDQMVVLEES-G---EWWKARSLATRKEGYIPSNYVARVDS   83 (86)
T ss_dssp             TSEEEEESSCCCCSSSSCCCCCTTCEEEEEEES-S---SEEEEEETTTCCEEEEEGGGEEEGGG
T ss_pred             CCcEEEECccCCCCCCCcCcCCCCCEEEEEEcC-C---CeEEEEECCCCCEEEEehHHcEEccc
Confidence            345799999999999999999999999999985 2   5999997  99999999999998854

>1aww_A ATK, AMGX1, BPK, bruton'S tyrosine kinase; X-linked agammaglobulinemia, XLA, BTK, SH3 domain, transferase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 1awx_A 1qly_A

Probab=99.54  E-value=2.3e-15  Score=91.36  Aligned_cols=59  Identities=31%  Similarity=0.658  Sum_probs=52.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|+|.++..++|+|++||+|.|+.+.+   .+||.++ .+|+.||||++||+.+..
T Consensus         7 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~g~~G~~P~~yv~~~~~   66 (67)
T 1aww_A            7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESN---LPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCS---SSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CCeEEEECccCCCCCCCCccCCCCCEEEEEEccC---CCcEEEEECCCCEEEEchHhEEEcCC
Confidence            3457999999999999999999999999998753   4599999 899999999999987653

>2vkn_A Protein SSU81; membrane, SH3 domain, transmembrane, membrane; 2.05A {Saccharomyces cerevisiae}

Probab=99.54  E-value=4.4e-15  Score=90.85  Aligned_cols=56  Identities=34%  Similarity=0.637  Sum_probs=48.7

Q ss_pred             cceEEeeccCCCCCC--CCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTD--ELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~--eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      .+++|+|+|.++..+  +|+|++||+|.|++.    +.|||.|+ .+|+.|+||++||+.+..
T Consensus         6 ~~~~alydy~~~~~~~~eLsf~~Gd~i~v~~~----~~~Ww~g~~~~g~~G~~P~~yv~~~~~   64 (70)
T 2vkn_A            6 YKAKALYPYDADDDDAYEISFEQNEILQVSDI----EGRWWKARRANGETGIIPSNYVQLIDG   64 (70)
T ss_dssp             EEEEESSCBCCCSSSTTBCCBCTTCEEEEECT----TSSEEEEECTTSCEEEEEGGGEEEEEE
T ss_pred             EEEEECccCCCCCCCCCcccCCCCCEEEEEEc----CCCeEEEEECCCCEEEEehHHEEECCC
Confidence            358999999998655  999999999999875    24699998 799999999999998864

>2kgt_A Tyrosine-protein kinase 6; SH3 domain, SRC kinase, PTK6, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=89.08  Aligned_cols=57  Identities=32%  Similarity=0.765  Sum_probs=50.1

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe---CCee---EEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKE---GYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~---~g~~---G~~P~~yv~~~~  128 (137)
                      ....++|+|+|.++..++|+|++||+|.| .+.+   .|||.|+.   +|+.   ||||++||+.+.
T Consensus         9 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v-~~~~---~~Ww~g~~~~~~g~~~~~G~~P~~yv~~~~   71 (72)
T 2kgt_A            9 LGPKYVGLWDFKSRTDEELSFRAGDVFHV-ARKE---EQWWWATLLDEAGGAVAQGYVPHNYLAERE   71 (72)
T ss_dssp             CCCEEECCTTCBCSSTTSCBCCTTCCEEE-EEEC---SSCEEEEEECTTSCEEEEEEECTTTSEEEC
T ss_pred             CCcEEEEcccCCCCCcCCcCCCCCCEEEE-eeCC---CCEEEEEEcCCCCCEeCCcEEcHhHEEEcc
Confidence            45679999999999999999999999999 7753   45999995   7999   999999999764

>3reb_B Tyrosine-protein kinase HCK; HIV-1 NEF, SH3 domain binding, signaling, HCK SH3 domain, PR binding; 3.45A {Homo sapiens}

Probab=99.53  E-value=1.7e-14  Score=92.34  Aligned_cols=58  Identities=38%  Similarity=0.730  Sum_probs=50.8

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~  130 (137)
                      ...++|+|||.++..++|+|++||+|.|+.. +   .|||.|+.  +|+.|+||++||+.+...
T Consensus         3 ~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~-~---~~Ww~g~~~~~g~~G~~P~~yv~~~~~~   62 (90)
T 3reb_B            3 DIIVVALYDYVSWSPDDLSFQKGDQMVVLEE-S---GEWWKARSLATRKEGYIPSNYVARVDSG   62 (90)
T ss_dssp             CCEEEESSCBCCSSTTBCCBCTTCEEEEEEC-S---SSEEEEEETTTCCEEEEEGGGEEEECC-
T ss_pred             cEEEEECCccCcCCcCcCCCCCCCEEEEEEe-C---CCEEEEEECCCCCEEEEehhheEECCCC
Confidence            3468999999999999999999999999987 2   35999995  899999999999988654

>2rqv_A BUD emergence protein 1; BEM1P, SH3, CDC42P, cytoplasm, cytoskeleton, SH3 domain, SIG protein; NMR {Saccharomyces cerevisiae} PDB: 2rqw_A

Probab=99.53  E-value=5.9e-15  Score=97.87  Aligned_cols=59  Identities=25%  Similarity=0.462  Sum_probs=50.8

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCee---EEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE---GYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~---G~~P~~yv~~~~~~  130 (137)
                      ..+++|+|||.++..+||+|++||+|.|+.+.+   .|||.++..|+.   |+||++||+.+...
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~---~~Ww~g~~~g~~g~~G~fPsnYV~~~~~~   66 (108)
T 2rqv_A            5 SLYAIVLYDFKAEKADELTTYVGENLFICAHHN---CEWFIAKPIGRLGGPGLVPVGFVSIIDIA   66 (108)
T ss_dssp             CCCEEESSCCCCCSSSBCCCCSSEEECCCCEET---TTEEEECCSSSSCCCEEEESTTCBCCCSS
T ss_pred             CeEEEECCCcCCCCCCcCCcCCCCEEEEeEecC---CCEEEEEECCccCCeeEeecceEEEecCC
Confidence            446899999999999999999999999998764   359999976655   99999999988643

>2cud_A SRC-like-adapter; SH3 domain, negative mitogenesis regulator, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=2.1e-14  Score=89.97  Aligned_cols=58  Identities=21%  Similarity=0.450  Sum_probs=50.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|||.++..+||+|++||+|.|++. +   .+||.++.  +|+.||||++||+.+..
T Consensus        16 ~~~~~~Alydy~a~~~~eLs~~~Gd~i~v~~~-~---~~Ww~~~~~~~g~~G~~P~~yv~~~~~   75 (79)
T 2cud_A           16 DSDFLAVLSDYPSPDISPPIFRRGEKLRVISD-E---GGWWKAISLSTGRESYIPGICVARVSG   75 (79)
T ss_dssp             CCCEEEESSCSSCTTTSCCSSCTTCEEEEEEE-E---TTEEEEEETTTCCEEEEEGGGEEEECC
T ss_pred             CCeEEEEccCCCCCCCCcCCCCCCCEEEEEec-C---CCeEEEEECCCCCEEEeeHHHeEEccC
Confidence            34569999999999999999999999999984 2   35999993  59999999999998754

>1wxu_A Peroxisomal biogenesis factor 13; SH3 domain, PEX13, protein-protein interaction, structural genomics; NMR {Mus musculus}

Probab=99.52  E-value=1.5e-14  Score=93.27  Aligned_cols=62  Identities=24%  Similarity=0.506  Sum_probs=52.7

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCC-CCCCeEEEEeCCe-eEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDE-NEREWWWSKLNNK-EGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~-~~~gWw~g~~~g~-~G~~P~~yv~~~~~~  130 (137)
                      ...++|||+|.+...+||+|++||+|.|+.+.++ ...|||.++..++ .||||.+||+.+...
T Consensus        17 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~~~~~~gWw~g~~~~~~~G~~P~~yv~~~~~~   80 (93)
T 1wxu_A           17 HVVARAEYDFVAVSDEEISFRAGDMLNLALKEQQPKVRGWLLASLDGQTTGLIPANYVKILGKR   80 (93)
T ss_dssp             BBCEEESSCBCCSSSSBCCBCSSCBCEECCTTTSCSCSSCEEEESSSSSCEEECSTTEEECCCB
T ss_pred             CEEEEECccCCCCCCCccCcCCCCEEEEEECCCCCCCCCcEEEEeCCcCEEEEehHHEEEcCCc
Confidence            4569999999999999999999999999987542 1147999997777 999999999998653

>2e5k_A Suppressor of T-cell receptor signaling 1; SH3 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=2.5e-14  Score=92.32  Aligned_cols=63  Identities=21%  Similarity=0.440  Sum_probs=53.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecC-CCCCCeEEEE--eCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSK--LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~-~~~~gWw~g~--~~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|+|.++..+||+|++||+|.|+.+.. +.+.|||.|+  .+|+.|+||.+||+.+...
T Consensus        15 ~~~~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~~~~~gWw~g~~~~~g~~G~fP~~yv~~~~~~   80 (94)
T 2e5k_A           15 NHETLQVIYPYTPQNDDELELVPGDFIFMSPMEQTSTSEGWIYGTSLTTGCSGLLPENYITKADEC   80 (94)
T ss_dssp             CCEEEEECSCBCCSSSSBCCBCTTCEEEECGGGCCSTTTTEEEEEESSSCCEEEEEGGGEEECCSC
T ss_pred             CCeEEEECCcCCCCCCCCcCCCCCCEEEEEECcCCCCCCCcEEEEECCCCCEEEechHHeEEcccC
Confidence            4567999999999999999999999999998731 1115699999  8999999999999998643

>2kbt_A Chimera of proto-oncogene VAV, linker, immunoglobulin G-binding protein G; sortase, protein ligation, intein, inset, solubility enhancement; NMR {Mus musculus}

Probab=99.51  E-value=7.9e-14  Score=96.55  Aligned_cols=59  Identities=31%  Similarity=0.585  Sum_probs=52.5

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ...++|+|||.++..+||+|++||+|.|+.+.+  +.|||.|+.+|+.||||++||+.+..
T Consensus         5 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~--~~gWw~g~~~g~~G~fP~~yv~~~~~   63 (142)
T 2kbt_A            5 FGTAKARYDFCARDRSELSLKEGDIIKILNKKG--QQGWWRGEIYGRIGWFPSNYVEEDYS   63 (142)
T ss_dssp             CCEEEESSCCCCSSSSBCCCCTTCEEEEEECCC--SSSEEEEEETTEEEEEETTSEEESSC
T ss_pred             CeEEEECCccCCCCCCcCCCCCCCEEEEEEecC--CCCeEEEEECCeeEEechHHEEEccc
Confidence            457999999999999999999999999998742  34699999999999999999999854

>1hsq_A Phospholipase C-gamma (SH3 domain); phosphoric diester hydrolase; NMR {Homo sapiens} SCOP: b.34.2.1 PDB: 2hsp_A

Probab=99.51  E-value=2e-15  Score=92.68  Aligned_cols=62  Identities=29%  Similarity=0.509  Sum_probs=53.6

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeE-EEcCCCeeecCCCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEG-YVPRNLLGLYPRVQPS  133 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G-~~P~~yv~~~~~~~~~  133 (137)
                      ..+++|+|+|.++..++|+|++||+|.|+.+.+   .|||.|+.+++.| |||++||+.+......
T Consensus         6 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~gG~~P~~yv~~~~~~~~~   68 (71)
T 1hsq_A            6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQE---GGWWRGDYGGKKQLWFPSNYVEEMVNPEGI   68 (71)
T ss_dssp             SSCCCCSSCCCCSSSSSCCCCTTCCCBSCCCBT---TTEECCBCSSSCSCCEETTTCCSCSCCCCC
T ss_pred             CeEEEECCCCCcCCCCccCCCCCCEEEEEEecC---CCEEEEEECCeEEeEEChHHcEECCCcccc
Confidence            457899999999999999999999999998754   3599999888886 9999999998765543

>2m0y_A Dedicator of cytokinesis protein 1; apoptosis; NMR {Mus musculus}

Probab=99.50  E-value=3e-14  Score=87.88  Aligned_cols=57  Identities=26%  Similarity=0.515  Sum_probs=50.8

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe---CCeeEEEcCCCeeecCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~---~g~~G~~P~~yv~~~~~  129 (137)
                      ...++|+|+|.++..++|+|++||+|.|++..    .|||.|+.   +|+.|+||++||+.++.
T Consensus        11 ~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~----~~W~~g~~~~~~g~~G~~P~~yv~~~~~   70 (74)
T 2m0y_A           11 EKYGVAFYNYDARGADELSLQIGDTVHILETY----EGWYRGYTLRKKSKKGIFPASYIHLKEA   70 (74)
T ss_dssp             CSCEEECSEECCCSSSBCCEETTEEEEEEEBS----SSCEEEEESSCSSCCEEECGGGEEECCC
T ss_pred             CeEEEEceeeCCCCcCcccCCCCCEEEEEEcC----CCeEEEEECCCCCCEEEEehHHEEEecc
Confidence            45789999999999999999999999999873    35999995   79999999999998764

>2yt6_A Adult MALE urinary bladder cDNA, riken FULL- length enriched library, clone:9530076O17...; SH3_1 domain; NMR {Mus musculus}

Probab=99.49  E-value=1.5e-13  Score=90.74  Aligned_cols=59  Identities=36%  Similarity=0.697  Sum_probs=52.3

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|||.+...++|+|++||+|.|+.+.+   .|||+++  .+|+.||||.+||+.+..
T Consensus        26 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~~~g~~G~~P~~yv~~~~~   86 (109)
T 2yt6_A           26 GVTIFVALYDYEARTTEDLSFKKGERFQIINNTE---GDWWEARSIATGKSGYIPSNYVVPADS   86 (109)
T ss_dssp             SCCEEEESSCCCCSSTTSCCCCTTCEEEEEECSC---TTCEEEEESSSCCEEEECTTTEEESSS
T ss_pred             CCEEEEECccCCCCCCCccCCCCCCEEEEEEccC---CCcEEEEECCCCCEEEechHHcEECCc
Confidence            3467999999999999999999999999998764   3599999  489999999999999854

>2jxb_A T-cell surface glycoprotein CD3 epsilon chain, cytoplasmic protein NCK2; T-cell receptor, SH3 domain, immunology, SH2 domain; NMR {Homo sapiens}

Probab=99.48  E-value=3.4e-14  Score=90.38  Aligned_cols=55  Identities=33%  Similarity=0.651  Sum_probs=49.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeee
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGL  126 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~  126 (137)
                      ....++|+|||.+...+||+|++||+|.|++. +   .|||.|+ .+|+.||||++||+.
T Consensus        30 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~---~~Ww~g~~~~g~~G~~P~~yv~~   85 (86)
T 2jxb_A           30 EEVIVIAKWDYTAQQDQELDIKKNERLWLLDD-S---KTWWRVRNAANRTGYVPSNYVER   85 (86)
T ss_dssp             CCEEEEESSCCCCCSSSBCCCCTTEEEEEEEC-C---SSEEEEECTTSCEEEEEGGGBCC
T ss_pred             CceEEEECccCCCCCCCEeccCCCCEEEEEec-C---CCeEEEEECCCCEEEeehHHEEe
Confidence            34579999999999999999999999999986 3   3699999 789999999999964

>3o5z_A Phosphatidylinositol 3-kinase regulatory subunit; SRC homology 3 domain, protein binding; 2.01A {Homo sapiens} SCOP: b.34.2.0 PDB: 2kt1_A

Probab=99.48  E-value=1.8e-14  Score=92.48  Aligned_cols=63  Identities=17%  Similarity=0.321  Sum_probs=51.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEe-------------cCCCCCCeEEEEe--CCeeEEEcCCCeeecCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRK-------------GDENEREWWWSKL--NNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~-------------~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~~~  131 (137)
                      ...+++|+|+|.++..+||+|++||+|.|+..             ..+ +.|||.|+.  +|+.|+||.+||+.+...+
T Consensus        10 ~~~~~~Alydy~a~~~~ELsf~~GD~I~V~~~~~~~l~~~~~~~~~~~-~~gW~~G~~~~~g~~G~fP~nyVe~i~~~~   87 (90)
T 3o5z_A           10 EGFQYRALYPFRRERPEDLELLPGDVLVVSRAALQALGVAEGGERCPQ-SVGWMPGLNERTRQRGDFPGTYVEFLGPVA   87 (90)
T ss_dssp             SEEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHTTCCTTGGGCHH-HHCEEEEEETTTCCEEEEEGGGEEEEEEEC
T ss_pred             CCcEEEEeeeECCCCCCccCCcCCCEEEEEeccccccccccccccCCC-CCCceEEEeCCCCCEEEeehHHEEEecccc
Confidence            45579999999999999999999999999843             111 236999984  6999999999999886543

>2kym_A BUD emergence protein 1; SH3 domain, BEM1P, SH3-CI, STE20P PRR, CDC42P-interacting, S signaling protein; NMR {Lodderomyces elongisporus}

Probab=99.47  E-value=6.7e-14  Score=94.33  Aligned_cols=60  Identities=27%  Similarity=0.470  Sum_probs=52.1

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE---eCCeeEEEcCCCeeecCCCCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK---LNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~---~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      .+++|+|||.++.++||+|++||+|.|+.+.+   .|||.|+   ..|+.|+||++||+.+....+
T Consensus         4 ~~~~Alydy~a~~~~ELsf~~Gd~i~vl~~~~---~~Ww~g~~~~~~g~~G~~P~nyv~~~~~~~~   66 (120)
T 2kym_A            4 LFAVTLYEFKAERDDELDVSPGENLSICAHYD---YEWFIAKPINRLGGPGLVPVSYVRIIDLMDP   66 (120)
T ss_dssp             CEEEECSCBCCCSTTCCCBCTTCEEEEEEEET---TTEEEEEESSSCSCCCCEEGGGEEEECSSCT
T ss_pred             EEEEEcccCCCCCCCccCCCCCCEEEEEEecC---CCEEEEEECCCCCCEEEEchHHEEEccCCCC
Confidence            46899999999999999999999999999864   3599998   468899999999999865444

>2rqr_A CED-12 homolog, engulfment and cell motility protein 1, linker, D of cytokinesis protein 2; KIAA0209, KIAA0281, apoptosis, membrane, phagocytosis; NMR {Homo sapiens}

Probab=99.46  E-value=7.8e-14  Score=93.90  Aligned_cols=56  Identities=16%  Similarity=0.472  Sum_probs=50.4

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe---CCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~---~g~~G~~P~~yv~~~~  128 (137)
                      ..+++|+|+|.++..+||+|++||+|.|+++. +   |||+|+.   +|+.|+||.+||+.+.
T Consensus        59 ~~~~~Alydy~a~~~~eLsf~~Gd~i~vl~~~-~---gWw~g~~~~~~g~~G~fP~nyV~~~~  117 (119)
T 2rqr_A           59 ERHGVAIYNFQGSGAPQLSLQIGDVVRIQETC-G---DWYRGYLIKHKMLQGIFPKSFIHIKE  117 (119)
T ss_dssp             CEEEEBCSCBCCCSTTBCCBCTTCEEEEEEEE-T---TEEEEEESSCTTCEEEEEGGGBCCCC
T ss_pred             ceEEEEccccCCCCCCcccCcCCCEEEEEEcC-C---CEEEEEECCCCCCEEEeChhHEEEec
Confidence            45789999999999999999999999999984 2   5999996   8999999999998764

>3i5r_A Phosphatidylinositol 3-kinase regulatory subunit alpha; SH3 domain, peptide complex, alternative splicing, disease mutation, HOST-virus interaction, phosphoprotein, polymorphism; 1.70A {Homo sapiens} SCOP: b.34.2.1 PDB: 3i5s_A 1pht_A 1pnj_A 2pni_A 1pks_A 1pkt_A

Probab=99.46  E-value=1.6e-14  Score=91.18  Aligned_cols=61  Identities=20%  Similarity=0.378  Sum_probs=50.1

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEec------------CCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKG------------DENEREWWWSK--LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~------------~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~  129 (137)
                      +.+++|+|+|.++..++|+|++||+|.|+.+.            ..++.|||.|+  .+|+.|+||.+||+.+..
T Consensus         5 ~~~~~Alydy~~~~~~eLs~~~Gd~I~V~~~~~~~~~~~~~~e~~~~~~gW~~g~~~~~g~~G~fP~~yV~~~~~   79 (83)
T 3i5r_A            5 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGR   79 (83)
T ss_dssp             EEEEEECSCBCCCSTTBCCBCTTCEEEEEHHHHHHHTCTTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEE
T ss_pred             CcEEEEccccCCCCCCccccCCCCEEEEeeccccccccccccccCCCCCccEEEEeCCCCCEEEEehHHEEECCc
Confidence            45689999999999999999999999999531            00123699997  569999999999998864

>1bb9_A Amphiphysin 2; transferase, SH3 domain; 2.20A {Rattus norvegicus} SCOP: b.34.2.1 PDB: 1muz_A 1mv0_B

Probab=99.45  E-value=5.3e-14  Score=94.21  Aligned_cols=57  Identities=28%  Similarity=0.446  Sum_probs=49.3

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEE-----ecCCCCCCeEEEEe----------CCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLR-----KGDENEREWWWSKL----------NNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~-----~~~~~~~gWw~g~~----------~g~~G~~P~~yv~~~~  128 (137)
                      ..+++|+|+|.++..+||+|++||+|.|+.     ..   +.|||.|+.          +|+.|+||.+||+.++
T Consensus        44 ~~~~~Alydy~a~~~dELsf~~GDiI~Vl~~~~~~~~---~~gWw~G~~~~t~~~~~~~~g~~G~fPsnyV~~l~  115 (115)
T 1bb9_A           44 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQ---DEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ  115 (115)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGC---CTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             ceEEEECCccCCCCCCccCcCCCCEEEEeeccCCccc---CCCeEEEEeCCCcccccccCCCEEEechHHEEECc
Confidence            456999999999999999999999999998     43   346999983          3889999999999874

>1awj_A ITK; transferase, regulatory intramolecular complex, kinase; NMR {Mus musculus} SCOP: b.34.2.1 PDB: 2rn8_A 2rna_A 2k79_A 2k7a_A

Probab=99.44  E-value=5.2e-15  Score=92.21  Aligned_cols=57  Identities=33%  Similarity=0.640  Sum_probs=50.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeec
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~  127 (137)
                      ....++|+|||.+...++|+|++||+|.|+++.+   .|||.++ .+|+.||||++||+..
T Consensus        19 ~~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~~~~~~g~~G~~P~~yv~~~   76 (77)
T 1awj_A           19 EETLVIALYDYQTNDPQELALRCDEEYYLLDSSE---IHWWRVQDKNGHEGYAPSSYLVEK   76 (77)
T ss_dssp             SSSCCCCCCCBCCCCTTSCCBCSSSCCSCCCTTS---SSBCCCCCSSSCCCCCBSTTCCCC
T ss_pred             CceEEEECccCCCCCcCCcCCCCCCEEEEEEecC---CCCEEEEECCCCEEEEehHHEEEc
Confidence            3456899999999999999999999999998753   4699999 6999999999999753

>1k1z_A VAV; SH3, proto-oncogene, signaling protein; NMR {Mus musculus} SCOP: b.34.2.1

Probab=99.42  E-value=9.2e-13  Score=82.02  Aligned_cols=54  Identities=20%  Similarity=0.433  Sum_probs=42.4

Q ss_pred             EEeeccCCC---CCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecC
Q psy7685          73 YALYDYEAN---NTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        73 ~al~dy~~~---~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~  128 (137)
                      +++|+|.++   ..+||+|++||+|.|+.+..  +.|||.|+  .+|+.|+||++||+.++
T Consensus        19 ~a~~~~~~~~~~~~~eLsf~~Gd~i~v~~~~~--~~gWw~g~~~~~g~~G~fP~nyV~~~~   77 (78)
T 1k1z_A           19 QEYYGIPPPPGAFGGFLRLNPGDIVELTKAEA--EHNWWEGRNTATNEVGWFPCNRVHPYV   77 (78)
T ss_dssp             SCBSSCSCCSSSSCCCCCBCTTCEEEEEECCS--SCSCEEEEETTTTEEEEECSTTEEESC
T ss_pred             EECCCCCCCCCCCCCccCCCCCCEEEEEEcCC--CCCeEEEEECCCCCEEEEehHHeEECC
Confidence            344455443   24899999999999999842  34699999  68999999999999864

>1mv3_A MYC box dependent interacting protein 1; tumor suppressor, endocytosis/exocytosis complex; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.40  E-value=2.3e-13  Score=99.96  Aligned_cols=57  Identities=30%  Similarity=0.491  Sum_probs=49.6

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEE-----ecCCCCCCeEEEEe----------CCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLR-----KGDENEREWWWSKL----------NNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~-----~~~~~~~gWw~g~~----------~g~~G~~P~~yv~~~~  128 (137)
                      ..+++|||+|.++..+||+|++||+|.|+.     ..   +.|||.|+.          +|+.||||.+||+.++
T Consensus       142 ~~~~rALYdY~a~~~dELSf~~GDiI~Vl~~~~~~~~---ddgWw~G~~~~t~~~~~d~~G~~G~FPsnYVe~l~  213 (213)
T 1mv3_A          142 MFKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQ---DEGWLMGVKESDWNQHKKLEKCRGVFPENFTERVP  213 (213)
T ss_dssp             CEEEEESSCBCCCSTTCCCBCSSCEEEECCCSCGGGS---CTTEEEEEEHHHHHTGGGGGGTCEEEESTTEEEEC
T ss_pred             ceEEEECCCcCCCCCCcCCcCCCCEEEEeecCCCCcc---CCCeeEEEeCCcccccccCCCCEEEecHHHeEECc
Confidence            346899999999999999999999999998     43   346999994          4899999999999863

>1gcq_C VAV proto-oncogene; SH3 domain, protein-protein complex, GRB2,VAV, signaling protein/signaling protein complex; 1.68A {Mus musculus} SCOP: b.34.2.1 PDB: 1gcp_A

Probab=99.39  E-value=1e-12  Score=80.14  Aligned_cols=50  Identities=20%  Similarity=0.406  Sum_probs=40.1

Q ss_pred             ccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecC
Q psy7685          77 DYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        77 dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~  128 (137)
                      +|.++..+||+|++||+|.|+++..  +.|||.|+  .+|+.|+||++||+.++
T Consensus        18 ~~~~~~~~eLsf~~Gd~i~v~~~~~--~~~Ww~g~~~~~g~~G~fP~~yv~~~~   69 (70)
T 1gcq_C           18 PPPGAFGPFLRLNPGDIVELTKAEA--EHNWWEGRNTATNEVGWFPCNRVHPYV   69 (70)
T ss_dssp             CCGGGCSCBCCBCTTCEEEEEECCT--TCSEEEEEETTTTEEEEEEGGGEEECC
T ss_pred             CCCCCCCCcCCcCCCCEEEEEeCCC--CCCCeEEEeCCCCCEeEeehHHeEECC
Confidence            3333445599999999999999832  34699996  78999999999999864

>3qwx_X Cell death abnormality protein 2; cell engulfment, signaling protein; 2.01A {Caenorhabditis elegans}

Probab=99.38  E-value=6.2e-13  Score=94.48  Aligned_cols=55  Identities=24%  Similarity=0.592  Sum_probs=49.7

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeee
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGL  126 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~  126 (137)
                      ...++|+|||.+...+||+|++||+|.|+++.+   .|||.|+ .+|+.|+||+|||+.
T Consensus       118 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~~g~~G~~P~nyv~~  173 (174)
T 3qwx_X          118 IEVVVGTFKFTGERETDLPFEQGERLEILSKTN---QDWWEARNALGTTGLVPANYVQI  173 (174)
T ss_dssp             SEEEEESSCBCCSSTTBCCBCTTCEEEEEECCS---SSEEEEECTTCCEEEEEGGGEEE
T ss_pred             ccEEEEecCcccCCCCccccccCCEEEEEEccC---CCeEEEEECCCCEEEEChHHEEe
Confidence            456899999999999999999999999998864   4599999 799999999999985

>3jv3_A Intersectin-1; SH3 domain, DH domain, guanine nucleotide exchange factor, autoinhibition, domain-swapped, cell junction, cell project endocytosis; 2.40A {Mus musculus} PDB: 3gf9_A

Probab=99.38  E-value=7.4e-13  Score=99.95  Aligned_cols=58  Identities=38%  Similarity=0.731  Sum_probs=52.5

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      +.+++|+|||.+...++|+|++||+|.|+...+   .|||.|+.+|+.||||++||+.+..
T Consensus         2 ~~~~~a~~~~~~~~~~el~~~~gd~i~v~~~~~---~~w~~~~~~g~~G~~P~~~v~~~~~   59 (283)
T 3jv3_A            2 SCQVIGMYDYTAQNDDELAFSKGQIINVLNKED---PDWWKGEVSGQVGLFPSNYVKLTTD   59 (283)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCS---TTEEEEEETTEEEEEEGGGEEEGGG
T ss_pred             CeEEEEccccCCCCCCcCCCCCCCEEEEEecCC---CCEEEEEECCCCCcCCCccccccCc
Confidence            357899999999999999999999999999864   4599999999999999999998754

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.37  E-value=8.2e-13  Score=96.50  Aligned_cols=59  Identities=31%  Similarity=0.644  Sum_probs=52.9

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|||.++..+||+|++||+|.|+.+.+   .|||.|+.+|+.||||.+||+.+..
T Consensus       157 ~~~~~~al~~y~~~~~~eL~~~~Gd~i~v~~~~~---~~W~~g~~~g~~G~~P~~yv~~~~~  215 (217)
T 1gri_A          157 QPTYVQALFDFDPQEDGELGFRRGDFIHVMDNSD---PNWWKGACHGQTGMFPRNYVTPVNR  215 (217)
T ss_dssp             CCCEEEESSCCCCSSTTBCCCCTTCEEEEEECCS---SSEEEEECSSCEEEEEGGGEEEECC
T ss_pred             CceEEEecCCccCCCCCcCCCCCCCEEEEEEeCC---CCeEEEEECCeEEEEeHHHeEECCC
Confidence            3567999999999999999999999999999854   4599999999999999999998853

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.37  E-value=1.1e-12  Score=94.88  Aligned_cols=59  Identities=27%  Similarity=0.438  Sum_probs=52.8

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      .+..++|+|+|.+...+||+|++||+|.|+.+.+   .|||.|+.+|+.||||.+||+.+..
T Consensus        80 ~~~~~~al~dy~a~~~~eLs~~~Gd~i~vl~~~~---~gWw~g~~~g~~G~~P~~yv~~~~~  138 (193)
T 1ng2_A           80 AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLL---DGWWVIRKDDVTGYFPSMYLQKSGQ  138 (193)
T ss_dssp             TCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCT---TSEEEEEETTEEEEEEGGGEEETTS
T ss_pred             cceeeeeccccCCCCCCcccccCCCEEEEEEecC---CCeEEEEECCCEEEEehHHeEECCC
Confidence            3456899999999999999999999999998863   4599999999999999999999864

>2dvj_A V-CRK sarcoma virus CT10 oncogene homolog, isoform A; SH3, SH2, signal transduction, adapter molecule, signaling protein; HET: PTR; NMR {Homo sapiens} PDB: 2eyy_A 2eyv_A 2eyw_A

Probab=99.36  E-value=2.6e-13  Score=100.61  Aligned_cols=59  Identities=27%  Similarity=0.632  Sum_probs=52.8

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...++|+|||.+...+||+|++||+|.|+++.+   .|||.|+ .+|+.||||++||+.+...
T Consensus       136 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~~g~~G~~P~~yv~~~~~~  195 (230)
T 2dvj_A          136 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPE---EQWWNAEDSEGKRGMIPVPYVEKYRPA  195 (230)
T ss_dssp             CCCCBCCSCCCCSSSSSCCCCSSCBCCCCBCSC---SSEEEEECTTSCEEEEEGGGSCCCCSS
T ss_pred             ceeEEEeeeecCCCCCCccCcCCCEEEEEEccC---CCcEEEEeCCCCEEEEehHHeEEcCCC
Confidence            456899999999999999999999999998864   4599999 8999999999999998654

>1u3o_A Huntingtin-associated protein-interacting protein; SH3, CIS-proline,, signaling protein; NMR {Rattus norvegicus}

Probab=99.34  E-value=1e-12  Score=82.40  Aligned_cols=54  Identities=28%  Similarity=0.509  Sum_probs=46.4

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe----CCeeEEEcCCCe
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL----NNKEGYVPRNLL  124 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~----~g~~G~~P~~yv  124 (137)
                      ..++|+|||.+...+||+|++|+++.|+++... +.+||.++.    .+++|+||+|||
T Consensus        18 e~~valydF~Ar~~~ELS~~kGd~vevle~~~~-~peW~lvr~~~~~~~qeGlVPsnyl   75 (82)
T 1u3o_A           18 ELTVVLQDFSAAHSSELSIQVGQTVELLERPSE-RPGWCLVRTTERSPPQEGLVPSSTL   75 (82)
T ss_dssp             EEEECSSCBCCCSTTCCCBCTTCEEEESSCTTS-STTEEEEEESSSSSCEEEEEEGGGS
T ss_pred             eEEEEEeeecCCCCCeeeEcCCCEEEEEecCCC-CCCEEEEEECCCCCCcEeeccccEE
Confidence            347899999999999999999999999987532 467999993    347899999998

>4d8k_A Tyrosine-protein kinase LCK; protein kinases, SH2 domain, SH3 domain, structural genomics center for structural genomics, JCSG; 2.36A {Homo sapiens} PDB: 1lck_A* 1x27_A*

Probab=99.34  E-value=2.8e-12  Score=91.18  Aligned_cols=57  Identities=30%  Similarity=0.654  Sum_probs=50.5

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~  129 (137)
                      ...++|+|||.++..+||+|++||+|.|+.. +   .+||.++.  +|+.|+||++||+.+..
T Consensus        12 ~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~-~---~~Ww~~~~~~~g~~G~vP~~yv~~~~~   70 (175)
T 4d8k_A           12 DNLVIALHSYEPSHDGDLGFEKGEQLRILEQ-S---GEWWKAQSLTTGQEGFIPFNFVAKANS   70 (175)
T ss_dssp             -CEEEESSCBCCCSSSBCCBCTTCEEEEEEC-C---SSEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             CcEEEEccCcCCcCCcccccccCCEEEEEcc-C---CCEEEEEECCCCceeeecccccccccc
Confidence            4579999999999999999999999999987 3   35999995  89999999999998754

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=99.33  E-value=2.5e-12  Score=100.31  Aligned_cols=62  Identities=23%  Similarity=0.503  Sum_probs=54.9

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      .....++|+|||.++..+||+|++||+|.|+.+.+   .|||.|+.+|+.||||++||+.+....
T Consensus       172 ~~~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~~  233 (341)
T 2dyb_A          172 MAAPRAEALFDFTGNSKLELNFKAGDVIFLLSRIN---KDWLEGTVRGATGIFPLSFVKILKDFP  233 (341)
T ss_dssp             CCCCEEEESSCBCCSSSSBCCBCTTCEEEEEEECS---SSEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             cCCcEEEEEEeeCCCCCCcCCccCCCEEEEEEecC---CCEEEEEECCcEEEechHHeEEcCCCC
Confidence            34567999999999999999999999999999854   469999999999999999999986543

>1ng2_A Neutrophil cytosolic factor 1; P47PHOX, autoinhibited, SH3 domain, NADPH oxidase, oxidoredu activator; 1.70A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 PDB: 1uec_A 1ov3_A 1wlp_B

Probab=99.33  E-value=1.1e-12  Score=94.90  Aligned_cols=60  Identities=25%  Similarity=0.587  Sum_probs=53.6

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|+|+|.+...+||+|++||+|.|+.+.+   .|||.|+.+|+.||||.+||+.+...
T Consensus        10 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~---~gWw~g~~~g~~G~~P~~yv~~~~~~   69 (193)
T 1ng2_A           10 ILQTYRAIADYEKTSGSEMALSTGDVVEVVEKSE---SGWWFCQMKAKRGWIPASFLEPLDSP   69 (193)
T ss_dssp             CCEEEECSSCBCCSSTTCCCBCTTCEEEEEECCT---TSCCEEEECCCCCCCCGGGCCCSSCS
T ss_pred             cCcEEEEcCCcCCCCCCcCCCCCCCEEEEEEecC---CCeEEEEECCeeeEechheEEeeccc
Confidence            3567899999999999999999999999999854   45999999999999999999988654

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.31  E-value=1.9e-12  Score=99.55  Aligned_cols=60  Identities=20%  Similarity=0.254  Sum_probs=53.1

Q ss_pred             cceEEeeccC--CCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          70 GAVYALYDYE--ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        70 ~~~~al~dy~--~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      .+++|+|||.  +...+||+|++||+|.|+++.++   |||.|+.+|+.||||.+||+.+....+
T Consensus       238 ~~~~al~d~~~~a~~~~eL~~~~Gd~i~v~~~~~~---gWw~g~~~g~~G~fP~~yv~~~~~~~~  299 (304)
T 2eyz_A          238 IYARVIQKRVPNAYDKTALALEVGELVKVTKINVS---GQWEGECNGKRGHFPFTHVRLLDQQNP  299 (304)
T ss_dssp             CCSCCSSCBCCCTTCSSCCCBCTTSCCEEEEECTT---SCEEEEETTEEEECCCTTSCCCSSCCT
T ss_pred             EEEEEeeeecCCCCCCCeecccCCCEEEEEEecCC---CeEEEEECCceEEechHHEEECCCCCc
Confidence            4688999999  66999999999999999988643   599999999999999999999976544

>3a98_A DOCK2, dedicator of cytokinesis protein 2; protein-protein complex, DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich sequence, cytoskeleton; 2.10A {Homo sapiens}

Probab=99.31  E-value=2.5e-12  Score=92.43  Aligned_cols=58  Identities=16%  Similarity=0.454  Sum_probs=51.3

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe---CCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~---~g~~G~~P~~yv~~~~~  129 (137)
                      ...+++|+|+|.++.+++|+|++||+|.|++..+    |||+|+.   +|+.|+||++||+.+..
T Consensus        16 ~~~~~~Alydf~~~~~~eLs~~~Gd~i~v~~~~~----~W~~g~~~~~~g~~G~fP~nyV~~~~~   76 (184)
T 3a98_A           16 KERHGVAIYNFQGSGAPQLSLQIGDVVRIQETCG----DWYRGYLIKHKMLQGIFPKSFIHIKEV   76 (184)
T ss_dssp             SCCEEEESSCBCCSSTTBCCBCTTCEEEEEEEET----TEEEEEETTEEEEEEEEEGGGEEEECC
T ss_pred             CceEEEEeeeeCCCCCCCCCcCCCCEEEEEecCC----CEEEEEEecCCCceEEECcceEEEecc
Confidence            3457999999999999999999999999998842    4999996   78999999999998864

>2eyz_A V-CRK sarcoma virus CT10 oncogene homolog isoform A; SH2, SH3, signaling protein; NMR {Homo sapiens} PDB: 2l3s_A 2l3p_A 2l3q_A 2ggr_A

Probab=99.28  E-value=1.2e-11  Score=95.04  Aligned_cols=59  Identities=27%  Similarity=0.632  Sum_probs=52.7

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...++|+|+|.++..+||+|++||+|.|+.+.+   .|||.++ .+|+.||||.+||+.+...
T Consensus       134 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~~g~~G~~P~~yv~~~~~~  193 (304)
T 2eyz_A          134 AEYVRALFDFNGNDEEDLPFKKGDILRIRDKPE---EQWWNAEDSEGKRGMIPVPYVEKYRPA  193 (304)
T ss_dssp             CCEEEECSCCCCSCSSSCCCCTTCEEEEEECCS---SSEEEEECTTSCEEEEESTTEEECCCS
T ss_pred             ceeEEEEeeecCCCCCcCcccCCCEEEEEEecC---CCcEEEEeCCCceeccchhccccccCC
Confidence            456899999999999999999999999999854   4599999 8999999999999998654

>1tuc_A Alpha-spectrin; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton; 2.02A {Gallus gallus} SCOP: b.34.2.1

Probab=99.28  E-value=1.3e-11  Score=73.90  Aligned_cols=46  Identities=22%  Similarity=0.643  Sum_probs=40.8

Q ss_pred             CCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          82 NTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        82 ~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      .++||+|++||+|.|+++.+   .+||.++.+|+.|+||.+||+.++..
T Consensus         2 ~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~   47 (63)
T 1tuc_A            2 GPREVTMKKGDILTLLNSTN---KDWWKVEVNDRQGFVPAAYVKKLDSG   47 (63)
T ss_dssp             CCCCCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEECSCS
T ss_pred             CccccCCCCCCEEEEEEecC---CCEEEEEECCcEEEEeHHHEEEcCCC
Confidence            46899999999999999864   45999999999999999999998654

>2pz1_A RHO guanine nucleotide exchange factor 4; helical bundle, beta barrel, beta sandwich, signaling protei; 2.25A {Homo sapiens} PDB: 2dx1_A 3nmz_D 3nmx_D

Probab=99.28  E-value=8.2e-12  Score=100.52  Aligned_cols=59  Identities=32%  Similarity=0.702  Sum_probs=53.0

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|||.+...++|+|++||+|.|+...+   .|||.|+.+|+.||||++||+.+..
T Consensus        29 ~~~~~~al~~~~~~~~~eL~~~~gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~   87 (466)
T 2pz1_A           29 SVVCAEALWDHVTMDDQELGFKAGDVIEVMDATN---REWWWGRVADGEGWFPASFVRLRVN   87 (466)
T ss_dssp             CCEEEEESSCBCCCCTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEECSC
T ss_pred             CccEEEEccccCCCCCCcCCCCCCCEEEEEEecC---CCEEEEEECCcEEEEehhHeeeccC
Confidence            3467899999999999999999999999998863   4599999999999999999998854

>1gri_A Growth factor bound protein 2; SH2, SH3, signal transduction adaptor; 3.10A {Homo sapiens} SCOP: b.34.2.1 b.34.2.1 d.93.1.1 PDB: 1aze_A 2a37_A 2azv_A 2a36_A 2azs_A

Probab=99.25  E-value=6e-12  Score=91.89  Aligned_cols=56  Identities=38%  Similarity=0.803  Sum_probs=46.5

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      .++|+|+|.++..+||+|++||+|.|+...+  +.|||.++.+|+.||||.+||+...
T Consensus         2 ~~~al~~~~~~~~~eLs~~~Gd~i~v~~~~~--~~~W~~~~~~g~~G~~P~~yv~~~~   57 (217)
T 1gri_A            2 EAIAKYDFKATADDELSFKRGDILKVLNEEC--DQNWYKAELNGKDGFIPKNYIEMKP   57 (217)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC--------CCEEEEESSSCEEEEEGGGEECCC
T ss_pred             EEEEeeccCCcCCCcCCCCCCCEEEEEeccC--CCCeEeeccCCccceECCccccccc
Confidence            4799999999999999999999999998753  3469999999999999999998764

>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A

Probab=99.22  E-value=2.3e-11  Score=97.20  Aligned_cols=62  Identities=19%  Similarity=0.454  Sum_probs=53.2

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC-CeeEEEcCCCeeecCCC
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-g~~G~~P~~yv~~~~~~  130 (137)
                      ..+..++|+|||.++.++||+|++||+|.|+++..  +.+||+++.. |+.|+||+|||+.....
T Consensus         9 ~~~~~~~aly~~~~~~~~el~~~~gd~i~v~~~~~--~~~ww~~~~~~g~~G~~P~~yv~~~~~~   71 (450)
T 1k9a_A            9 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTK--DPNWYKAKNKVGREGIIPANYVQKREGV   71 (450)
T ss_dssp             CTTCEEEESSCBCCSSSSBCCBCTTCEEEEEEECS--STTEEEEECTTCCEEEEEGGGEEECCCC
T ss_pred             CCCCEEEECCCcCccCCCcCCCCCCCEEEEeeccC--CCCceEEEECCCceeeechhcccccccc
Confidence            35567999999999999999999999999999843  3469999954 99999999999987553

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.20  E-value=2.1e-11  Score=93.70  Aligned_cols=56  Identities=23%  Similarity=0.571  Sum_probs=50.1

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~  127 (137)
                      ...++|+|||.++..++|+|++||+|.|+++.+   .+||.++ .+|+.||||.+||+.+
T Consensus       147 ~~~~~al~dy~~~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~~~g~~G~~P~~yv~~~  203 (308)
T 3qwy_A          147 IEVVVGTFKFTGERETDLPFEQGERLEILSKTN---QDWWEARNALGTTGLVPANYVQIQ  203 (308)
T ss_dssp             CEEEEESSCBCCSSTTBCCBCTTCEEEEEECCS---SSEEEEECTTSCEEEEEGGGEEEC
T ss_pred             ceeEEEeceEcCCCCCcCcCCCCCEEEEEEcCC---CCeEEEEeCCCCeeEecccccccc
Confidence            346899999999999999999999999998764   3599999 5999999999999944

>2de0_X Alpha-(1,6)-fucosyltransferase; FUT8, glycosyltransferase, N-glycan, COR SH3 domain; 2.61A {Homo sapiens}

Probab=99.19  E-value=3e-11  Score=99.06  Aligned_cols=59  Identities=15%  Similarity=0.133  Sum_probs=52.4

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...++|+|+|.++..+||+|++||+|.|++..+   .|||+|+  .+|+.|+||+|||+.+...
T Consensus       442 ~~~~~aly~y~a~~~dELs~~~GD~i~v~~~~~---~gW~~G~~~~~g~~G~fPsnyV~~~~~~  502 (526)
T 2de0_X          442 AHNQIAIYAHQPRTADEIPMEPGDIIGVAGNHW---DGYSKGVNRKLGRTGLYPSYKVREKIET  502 (526)
T ss_dssp             CCEEEECSCBCCSSTTBCCBCTTCEEEEEEECS---SSEEEEEETTTTEEEEEEGGGEEECCCE
T ss_pred             ccceEEeecCCCCCCCcCCcCCCCEEEEccccC---CCeeEEEeCCCCCEEEECchheeEcccC
Confidence            456899999999999999999999999998864   4599999  7899999999999987543

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=99.18  E-value=1.2e-11  Score=76.88  Aligned_cols=48  Identities=23%  Similarity=0.617  Sum_probs=41.9

Q ss_pred             CCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          80 ANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        80 ~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ++..+||+|++||+|.|+.+.+   .+||+++.+|+.||||.+||+.+...
T Consensus         2 a~~~~eLs~~~Gd~i~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~~~~~   49 (77)
T 2jmc_A            2 AMGPREVTMKKGDILTLLNSTN---KDWWKVEVNDRQGFVPAAYVKKLDSG   49 (77)
T ss_dssp             CSSSCCCCCCTTCEEECCCCCC---SSCCCEEETTEEECCCGGGEEECCCS
T ss_pred             CcCCCccCCCCCCEEEEEEecC---CCEEEEEECCcEEEEEeeEEEEcCCC
Confidence            4578899999999999998764   45999999999999999999988643

>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7

Probab=99.18  E-value=2.8e-11  Score=98.77  Aligned_cols=57  Identities=32%  Similarity=0.711  Sum_probs=50.2

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~  128 (137)
                      ...++|+|||.++..+||+|++||+|.|+++.+   .|||.|+.  +|+.||||++||+...
T Consensus        85 ~~~~~alyd~~~~~~~el~~~~gd~i~v~~~~~---~~ww~~~~~~~g~~G~~P~~yv~~~~  143 (535)
T 2h8h_A           85 VTTFVALYDYESRTETDLSFKKGERLQIVNNTE---GDWWLAHSLSTGQTGYIPSNYVAPSD  143 (535)
T ss_dssp             --CEEESSCBCCCSSSBCCBCTTCEEEEEECSS---SSEEEEEETTTCCEEEEEGGGEEETT
T ss_pred             CcEEEEccccCCcCCCcCCcCCCCEEEEEEecC---CCceEEEECCCCcceEecchhhcccc
Confidence            356899999999999999999999999999864   45999996  8999999999999864

>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B

Probab=99.17  E-value=3.4e-11  Score=96.20  Aligned_cols=58  Identities=40%  Similarity=0.758  Sum_probs=51.2

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|+|||.++.++||+|++||+|.|+++.    .|||+|+  .+|+.|+||+|||+.+..
T Consensus         7 ~~~~~~al~~~~~~~~~el~~~~gd~~~v~~~~----~~W~~~~~~~~g~~G~~P~~yv~~~~~   66 (454)
T 1qcf_A            7 IRIIVVALYDYEAIHHEDLSFQKGDQMVVLEES----GEWWKARSLATRKEGYIPSNYVARVDS   66 (454)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEECC----TTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             CCeEEEECcccCCcCCCcCcccCCCEEEEEecC----CCCeEEEECCCCceEEecchhcccccc
Confidence            445699999999999999999999999999873    3599999  789999999999997753

>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...

Probab=99.17  E-value=2.3e-11  Score=97.19  Aligned_cols=57  Identities=32%  Similarity=0.722  Sum_probs=50.6

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~  129 (137)
                      ..++|+|||.++.++||+|++||+|.|+++.+   .|||.++.  +|+.||||++||+....
T Consensus         3 ~~~~al~~~~~~~~~el~~~~gd~~~v~~~~~---~~ww~~~~~~~g~~G~~P~~yv~~~~~   61 (452)
T 1fmk_A            3 TTFVALYDYESRTETDLSFKKGERLQIVNNTE---GDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (452)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCS---SSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             eEEEECCccCCCCCCCCCccCCCEEEEeccCC---CCceEEEEcCCCcccccCccccccccc
Confidence            35899999999999999999999999998753   45999996  89999999999998643

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.79  E-value=2.7e-12  Score=98.62  Aligned_cols=61  Identities=16%  Similarity=0.282  Sum_probs=52.1

Q ss_pred             CcceEEeeccCCCC--CCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          69 NGAVYALYDYEANN--TDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        69 ~~~~~al~dy~~~~--~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ..+++|+|||.++.  .+||+|++||+|.|+.+.+   .|||.|+.+|+.||||.+||+.+....+
T Consensus       237 ~~~~~alydy~~~~~~~~eLs~~~Gd~i~v~~~~~---~gWw~g~~~g~~G~fP~~yv~~~~~~~~  299 (303)
T 2lqn_A          237 PVFAKAIQKRVPCAYDKTALALEVGDIVKVTRMNI---NGQWEGEVNGRKGLFPFTHVKIFDPQNP  299 (303)
Confidence            35689999998554  7799999999999998854   4599999999999999999999976544

>2lqn_A CRK-like protein; SH2, SH3, V-CRK sarcoma virus CT10 oncogene homolog (avian)- signaling protein; NMR {Homo sapiens} PDB: 2lqw_A*

Probab=98.70  E-value=7.4e-12  Score=96.15  Aligned_cols=59  Identities=29%  Similarity=0.682  Sum_probs=52.5

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...++|+|||.++..+||+|++||+|.|+++.++   |||.++ .+|+.||||.+||+.+...
T Consensus       125 ~~~~~alydy~~~~~~eLsf~~Gd~i~v~~~~~~---~Ww~~~~~~g~~G~~P~~yv~~~~~~  184 (303)
T 2lqn_A          125 LEYVRTLYDFPGNDAEDLPFKKGEILVIIEKPEE---QWWSARNKDGRVGMIPVPYVEKLVRS  184 (303)
Confidence            4568999999999999999999999999988643   599999 7899999999999988653

>3haj_A Human pacsin2 F-BAR; pacsin,syndapin,FAP52,F-BAR, alternative splicing, coiled coil, cytoplasmic vesicle, endocytosis, phosphoprotein, polymorphism; 2.78A {Homo sapiens}

Probab=99.11  E-value=7.5e-12  Score=101.68  Aligned_cols=57  Identities=37%  Similarity=0.638  Sum_probs=0.0

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC-CeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN-NKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~-g~~G~~P~~yv~~~  127 (137)
                      +..++|+|||.+...++|+|++||+|.|+...+  +.|||.|+.. |+.||||.+||+.+
T Consensus       428 ~~~~~alydy~~~~~~eLsf~~Gd~i~vl~~~~--~~~Ww~g~~~~g~~G~~P~nyv~~i  485 (486)
T 3haj_A          428 EVRVRALYDYEGQEHDELSFKAGDELTKMEDED--EQGWCKGRLDNGQVGLYPANYVEAI  485 (486)
T ss_dssp             ------------------------------------------------------------
T ss_pred             CeEEEEccccCCCCCCcCccCCCCEEEEEEecC--CCCeeEEEeCCCCEEEEeHHHceeC
Confidence            456899999999999999999999999998753  3479999966 99999999999876

>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A

Probab=99.10  E-value=1e-10  Score=94.54  Aligned_cols=59  Identities=31%  Similarity=0.492  Sum_probs=51.5

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ...++|+|||.+...+||+|++||+|.|+++.+  +.+||.++.+|+.|+||+|||+.+..
T Consensus        43 ~~~~~alyd~~~~~~~els~~~gd~~~v~~~~~--~~~w~~~~~~~~~G~~P~~yv~~~~~  101 (495)
T 1opk_A           43 PNLFVALYDFVASGDNTLSITKGEKLRVLGYNH--NGEWCEAQTKNGQGWVPSNYITPVNS  101 (495)
T ss_dssp             -CEEEESSCBCCCSTTBCCBCTTCEEEEEEECT--TSSEEEEECSSCEEEEEGGGEEESSS
T ss_pred             CcEEEEeCCcCCCCCCCCCccCCCEEEEeecCC--CCCceeeeecCCcceecccccccccc
Confidence            346999999999999999999999999998753  33699999889999999999998754

>3qwy_A Cell death abnormality protein 2; cell engulfment, signaling protein; 2.52A {Caenorhabditis elegans}

Probab=99.08  E-value=1.2e-11  Score=95.10  Aligned_cols=57  Identities=19%  Similarity=0.330  Sum_probs=0.0

Q ss_pred             cceEEeeccCC--CCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEA--NNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~--~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ..++|+|+|.+  ...+||+|++||+|.|+++..+   |||.|+.+|+.||||.+||+.+..
T Consensus       248 ~~a~alyd~~~~~~~~~ELs~~~Gd~i~v~~~~~~---~ww~g~~~g~~G~fP~~yv~~~~~  306 (308)
T 3qwy_A          248 AKAKVTFDRVPNAYDPTQLRVKKGQTVLVTQKMSN---GMYKAELDGQIGSVPHTYLRFTAV  306 (308)
T ss_dssp             --------------------------------------------------------------
T ss_pred             cccccccccccccCCcccceeCCCCEEEEEEEcCC---CcEEEEECCeeEEechHHeEEecC
Confidence            46889999954  4569999999999999988543   599999999999999999998854

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=99.00  E-value=7.2e-10  Score=65.83  Aligned_cols=41  Identities=29%  Similarity=0.763  Sum_probs=36.2

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL  112 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~  112 (137)
                      ...++|+|||.++..+||+|++||+|.|+++.+   .+||.|+.
T Consensus        21 ~~~~~alydy~a~~~~eLsf~~Gd~i~v~~~~~---~~Ww~g~~   61 (62)
T 1g2b_A           21 KELVLALYDYQEKSPREVTMKKGDILTLLNSTN---KDWWKVEV   61 (62)
T ss_dssp             SCEEEECSCBCCSSTTBCCBCTTCEEEEEECCS---SSEEEEEE
T ss_pred             ceEEEEeeeECCCCCCccCCCCCCEEEEEEecC---CCEEEEEe
Confidence            457999999999999999999999999999854   45999985

>1ri9_A FYN-binding protein; SH3-like, helically extended, signaling protein; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=99.00  E-value=2.4e-10  Score=74.04  Aligned_cols=58  Identities=22%  Similarity=0.213  Sum_probs=48.1

Q ss_pred             CcceEEeecc--CCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          69 NGAVYALYDY--EANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        69 ~~~~~al~dy--~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      ...++|+|+|  ...+..+|+|++|++|.||+..+.   +||.|| ..|+.|+||.+||..+..
T Consensus        39 l~~~~a~~~f~~~k~g~~DLpfkkGE~LeVI~~~e~---~wwLcRNs~GkyGyVP~~yl~~~d~   99 (102)
T 1ri9_A           39 LYSTKVTTSITSKKWGTRDLQVKPGESLEVIQTTDD---TKVLCRNEEGKYGYVLRSYLADNDG   99 (102)
T ss_dssp             SSCCBCCTTSCSSCCCTTBCCCCTTCBCEEEEESSS---SEEEEEETTTEEEEEEGGGSCC---
T ss_pred             EEEEEEeeccccccCCcccCCcCCCCEEEEEEeCCC---CEEEEECCCCCCCceeHHHhccccc
Confidence            3457788888  667889999999999999998753   699999 899999999999987653

>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}

Probab=98.95  E-value=5e-10  Score=93.95  Aligned_cols=66  Identities=24%  Similarity=0.316  Sum_probs=52.0

Q ss_pred             CCcceEEeeccC---CCCCCCCCCCCCCEEEEEEecCC--CCCCeEEEE--eCCeeEEEcCCCeeecCCCCCC
Q psy7685          68 NNGAVYALYDYE---ANNTDELSFKTGECIIVLRKGDE--NEREWWWSK--LNNKEGYVPRNLLGLYPRVQPS  133 (137)
Q Consensus        68 ~~~~~~al~dy~---~~~~~eLs~~~Gd~i~vl~~~~~--~~~gWw~g~--~~g~~G~~P~~yv~~~~~~~~~  133 (137)
                      ...+++|+|||.   +..++.|+|++||+|.++.....  .+.|||.|+  .+|+.|+||.+||..++.+..+
T Consensus       572 rs~~~~Al~d~~~~~~~~~~~L~f~kGDlI~l~~~~~~~~~~~~W~~G~~~~~g~~G~fP~~~V~~lptl~~p  644 (655)
T 3pvl_A          572 RSKYVVALQDNPNPAGEESGFLSFAKGDLIILDHDTGEQVMNSGWANGINERTKQRGDFPTDCVYVMPTVTLP  644 (655)
T ss_dssp             HCCEEEESSCCCC-----CCBCCCCTTCEEEESSCCHHHHHHSSEEEEEETTTCCEEEEEGGGEEECCCSSCC
T ss_pred             cchhhhHHhhcccCCCCCCCcccccCCCEEEEccccCcccCCCCeEEEEeCCCCceEEeEhhhEEECCCCCCC
Confidence            456899999999   67888999999999999876200  024699999  8999999999999999986543

>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A

Probab=98.94  E-value=1.3e-10  Score=89.12  Aligned_cols=54  Identities=30%  Similarity=0.640  Sum_probs=45.6

Q ss_pred             ceEEeeccCCCCCC-----CCCCCCCCEEEEEEecCCCCCCeEEEEeC------CeeEEEcCCCeeec
Q psy7685          71 AVYALYDYEANNTD-----ELSFKTGECIIVLRKGDENEREWWWSKLN------NKEGYVPRNLLGLY  127 (137)
Q Consensus        71 ~~~al~dy~~~~~~-----eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~------g~~G~~P~~yv~~~  127 (137)
                      +++|+|||.++.++     +|+|++||+|.|++..+   .|||.++..      |+.|+||++|+.+.
T Consensus         3 ~vrAlydy~~~~~~~~p~~eLsf~~GDil~V~~~~d---~~WW~a~~~~~~~~~~~~G~iPsny~~e~   67 (295)
T 1kjw_A            3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGD---EEWWQARRVHSDSETDDIGFIPSKRRVER   67 (295)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCS---SSEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEeeccCCCCCCCCCCcCCcCCCCCEEEEEEeCC---CCeEEEEECCCCCccCceeEeecHHHHHH
Confidence            48899999988777     99999999999999854   459999943      37899999998653

>2gtj_A FYN-binding protein; SH3, redox, signaling protein; NMR {Homo sapiens} PDB: 2gto_A

Probab=98.88  E-value=6.9e-10  Score=71.30  Aligned_cols=57  Identities=26%  Similarity=0.390  Sum_probs=49.0

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~  128 (137)
                      ..++|+|+ ...+..+|+|++|++|.|++..+. +.|||.+| ..|+.|+||.+||+.--
T Consensus        29 ~~a~a~~~-~k~g~~dLp~~~GE~LeII~~~e~-p~g~Wl~RN~~G~~GyVp~~~v~vd~   86 (96)
T 2gtj_A           29 HLAKACCD-VKGGKNELSFKQGEQIEIIRITDN-PEGKWLGRTARGSYGYIKTTAVEIDY   86 (96)
T ss_dssp             EEEEESSC-EECTTSCCEECTTCCEEEEECTTC-SSSCCEEECTTCCBCCCCGGGEEECS
T ss_pred             EEEEEeec-CCCCcccCCcCCCCEEEEEEccCC-CCCeEEEECCCCCCCccchhhEEEEh
Confidence            46789998 566888999999999999998653 57899999 89999999999998753

>1ug1_A KIAA1010 protein; structural genomics, SH3 domain, hypothetical protein BAA76854.1, riken structural genomics/proteomics initiative RSGI; NMR {Homo sapiens} SCOP: b.34.2.1

Probab=98.85  E-value=1.2e-08  Score=64.76  Aligned_cols=61  Identities=20%  Similarity=0.335  Sum_probs=48.3

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCC-CCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDE-NEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~-~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      .+.+..++.+...-+|++++||+|.|+++.++ +..+||++...|+.||||++|++.+...+
T Consensus        19 LY~~t~~~~~tq~~dl~l~~GdlVAVl~k~Dp~Gn~srW~Vdtgg~~GyvPs~yLe~~~~~~   80 (92)
T 1ug1_A           19 LFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRR   80 (92)
T ss_dssp             EEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCS
T ss_pred             eEEeccCcCCCCceeeeecCCCEEEEEecCCCCCCCcceEEECCCcEEeeEhhhceEcccCC
Confidence            45566666667778999999999999998655 23446667779999999999999997543

>4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A

Probab=98.76  E-value=9.1e-09  Score=79.97  Aligned_cols=54  Identities=26%  Similarity=0.517  Sum_probs=45.1

Q ss_pred             cCCcceEEeeccCCCCCCC-------CCCCCCCEEEEEEecCCCCCCeEEEEe---CCeeEEEcCCC
Q psy7685          67 LNNGAVYALYDYEANNTDE-------LSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNL  123 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~e-------Ls~~~Gd~i~vl~~~~~~~~gWw~g~~---~g~~G~~P~~y  123 (137)
                      ....+++|+|||.+..+++       |+|++||+|.|+...+.+   ||.++.   .|..|+||+++
T Consensus        36 ~~~~~vrAlfdY~~~~d~d~P~~e~~LsF~~GDiL~V~~~~d~~---WWqar~~~~~g~~GlIPS~~   99 (337)
T 4dey_A           36 PVAFAVRTNVSYSAAHEDDVPVPGMAISFEAKDFLHVKEKFNND---WWIGRLVKEGCEIGFIPSPV   99 (337)
T ss_dssp             CCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSS---EEEEEESSTTCCCEEEECHH
T ss_pred             CccEEEEEccccCCCCCCCCCcccccccccCCCEEEEEecCCCC---eEEEEECCCCCCccEecCHH
Confidence            3455789999999987654       999999999999986544   999994   57899999976

>3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens}

Probab=98.58  E-value=4.1e-08  Score=75.57  Aligned_cols=57  Identities=16%  Similarity=0.316  Sum_probs=43.4

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCC------CCCeEEEE-eC-----CeeEEEcCCCeee
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDEN------EREWWWSK-LN-----NKEGYVPRNLLGL  126 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~------~~gWw~g~-~~-----g~~G~~P~~yv~~  126 (137)
                      -+++|+|||.+..+.+|+|++||++.|+...+++      ..|||.++ ..     +..|+||++|+.+
T Consensus         5 fyVRalfdy~~~~~~eL~F~kGDil~V~dt~~~~~~~~~~~~gwW~A~~~~~~~~~~~~G~IPs~~~ae   73 (308)
T 3kfv_A            5 FYIRTHFELEPSPPSGLGFTRGDVFHVLDTLHPGPGQSHARGGHWLAVRMGRDLREQERGIIPNQSRAE   73 (308)
T ss_dssp             EEEEECSCBCCCSSSBCCBCTTCEEEEEEC-------------CEEEEEECTTSCEEEEEEECCHHHHH
T ss_pred             EEEEEecCcCCCCcccCCCccCCEEEEccccCCCcccccccCceEEEEecCCCCCcCCCCeeechHHHH
Confidence            3678999999999999999999999999876432      24699998 32     2689999988754

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=98.56  E-value=4.8e-08  Score=77.43  Aligned_cols=58  Identities=19%  Similarity=0.322  Sum_probs=46.2

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCC-----eeEEEcCCCeee
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNN-----KEGYVPRNLLGL  126 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g-----~~G~~P~~yv~~  126 (137)
                      .-+++|+|||.+....+|+|++||++.|+.....++.+||.++ ...     +.|+||++|+.+
T Consensus       106 ~~~vral~dy~~~~~~~Lsf~~Gdil~V~~~~~~~d~~wW~a~~~~~~~~~~~~G~IPs~~~~e  169 (391)
T 3tsz_A          106 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  169 (391)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGSSSEEEEEEECGGGCEEEEEEEECHHHHH
T ss_pred             ccccccccccCCCCCCcceEccCCEEEEEeccCCCCCCeEEEEEeCCCCCcccCCEecCHHHHH
Confidence            3457799999999999999999999999987321234699999 322     489999999864

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=98.42  E-value=1.7e-06  Score=63.00  Aligned_cols=128  Identities=45%  Similarity=0.875  Sum_probs=86.6

Q ss_pred             hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhhccccCCcccccchhhhhHhhhcccCCcceEEeeccCCCCCCC
Q psy7685           7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLGILNNGAVYALYDYEANNTDE   85 (137)
Q Consensus         7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~dy~~~~~~e   85 (137)
                      .|.|+..|+.+++++| +.|+++......+..|+...+.....+....-+++..........+.....+++.|......+
T Consensus        91 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~~~~~~~~~~  170 (229)
T 2vge_A           91 LHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALWDYSAEFGDE  170 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESSCBCCSSTTB
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHHHHhhccccc
Confidence            5778888888888888 888877776655566666654212222222222332222222233445567888888888888


Q ss_pred             CCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCCCC
Q psy7685          86 LSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPSA  134 (137)
Q Consensus        86 Ls~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~~~  134 (137)
                      +.+..|..+.+..++..+..-++.+...|....|+..|++.+++.++++
T Consensus       171 ~ll~~ga~~~~~~~d~~G~TpL~~A~~~g~~~~v~~~~l~~~p~~~~~~  219 (229)
T 2vge_A          171 LSFREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVKPQR  219 (229)
T ss_dssp             CCBCTTCEEEEEESSCTTCSSEEEEEETTEEEEEEGGGEESSCCCC---
T ss_pred             cCccccccccccccCCCcccHHHHHHHcCCcceeehhhhhhCCCCCCch
Confidence            9999999987777765555567888899999999999999999887764

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=98.42  E-value=2e-07  Score=78.96  Aligned_cols=55  Identities=31%  Similarity=0.612  Sum_probs=45.4

Q ss_pred             cceEEeeccCCCCCCC-----CCCCCCCEEEEEEecCCCCCCeEEEEeC------CeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDE-----LSFKTGECIIVLRKGDENEREWWWSKLN------NKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~e-----Ls~~~Gd~i~vl~~~~~~~~gWw~g~~~------g~~G~~P~~yv~~~  127 (137)
                      -+++|+|||++..+++     |+|++||+|.|+...+.   +||.++..      ++.|+||++|+.+.
T Consensus       428 ~~vrAl~dy~~~~d~~~p~~~LsF~~GDil~v~~~~~~---~WW~a~~~~~~~~~~~~G~iPs~~~~e~  493 (721)
T 2xkx_A          428 FYIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDE---EWWQARRVHSDSETDDIGFIPSKRRVER  493 (721)
T ss_pred             eeEEEeeccCcCCCCCCccccccccCCCEEEEeecCCC---CeEEEEECCCCCccCccceeecHHHHHH
Confidence            4578999999998888     99999999999988643   59999932      35699999998543

>3pe0_A Plectin; cytoskeleton, plakin, spectrin repeat, SH3, structural prote intermediate filament, crosslinking; 2.95A {Homo sapiens}

Probab=98.38  E-value=3.5e-07  Score=69.56  Aligned_cols=54  Identities=19%  Similarity=0.283  Sum_probs=43.6

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      ..++|+|||.+.   ++++.+|+.++++...+..   ||.++ .+|.+|+||++|+...++
T Consensus       199 ~~v~al~dy~~~---e~~~~kge~~~l~~~s~~~---wW~v~~~~G~~g~vPs~~~~ip~p  253 (283)
T 3pe0_A          199 LPLLAVCDYKQV---EVTVHKGDECQLVGPAQPS---HWKVLSSSGSEAAVPSVCFLVPPP  253 (283)
T ss_dssp             EEEEECSCEECS---SCEECTTCEEEEEEECSTT---EEEEECC---EEEEEGGGEECCSC
T ss_pred             ceEEeecCccCC---cccccCCCEEEEeeCCCCC---ceEEEcCCCCEeeccceEEeeCCC
Confidence            568999999764   7999999999999886444   99999 788999999999987654

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=98.36  E-value=4.4e-07  Score=73.43  Aligned_cols=58  Identities=21%  Similarity=0.344  Sum_probs=46.5

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-e--CC---eeEEEcCCCeee
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-L--NN---KEGYVPRNLLGL  126 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~--~g---~~G~~P~~yv~~  126 (137)
                      .-+++|+|+|.+..+.+|+|++||++.|+.....++.+||.++ .  ++   +.|+||++|+.+
T Consensus        98 s~yVralfdy~~~~~~~LsF~~GDIL~V~d~~~~~d~~wW~A~~~~~~~~~~~~GlIPs~~~~e  161 (468)
T 3shw_A           98 SFYIRTHFEYEKESPYGLSFNKGEVFRVVDTLYNGKLGSWLAIRIGKNHKEVERGIIPNKNRAE  161 (468)
T ss_dssp             CEEEEECSCBCCSSTTBCCBCTTCEEEEEESSGGGCTTEEEEEEECTTSCEEEEEEEECHHHHH
T ss_pred             ccccccccCcCCCCCCCceEccCCEEEEeecccCCCCCeEEEEEcCCCCcccccceecCHHHHH
Confidence            4467899999999999999999999999987321234699999 2  33   689999999854

>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*

Probab=98.22  E-value=1.2e-06  Score=66.94  Aligned_cols=51  Identities=37%  Similarity=0.726  Sum_probs=35.7

Q ss_pred             cceEEeeccCCCCCC-----CCCCCCCCEEEEEEecCCCCCCeEEEEe------CCeeEEEcCCC
Q psy7685          70 GAVYALYDYEANNTD-----ELSFKTGECIIVLRKGDENEREWWWSKL------NNKEGYVPRNL  123 (137)
Q Consensus        70 ~~~~al~dy~~~~~~-----eLs~~~Gd~i~vl~~~~~~~~gWw~g~~------~g~~G~~P~~y  123 (137)
                      -+++|+|||++..++     .|+|++||++.|+...++   +||.++.      ..+.|++|+..
T Consensus         6 ~yvRa~fdY~~~~D~~~P~~gL~F~~gDiL~V~~~~d~---~wWqA~~v~~~~~~~~~GlIPS~~   67 (292)
T 3tvt_A            6 LYVRALFDYDPNRDDGLPSRGLPFKHGDILHVTNASDD---EWWQARRVLGDNEDEQIGIVPSKR   67 (292)
T ss_dssp             CEEEECSCBCC---------CCCBCTTCEEEEEECCSS---SEEEECCCCC--------EEECHH
T ss_pred             EEEEEeccCCCCCCCCCCCCcCCcCCCCEEEEeecCCC---CeEEEEEeCCCCCccceeEEeChH
Confidence            468999999987655     599999999999998654   5999982      22479999853

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=98.18  E-value=1.7e-06  Score=61.91  Aligned_cols=56  Identities=27%  Similarity=0.566  Sum_probs=48.7

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ...++|+|+|.++...+|.|++|+++.|....+   .+||.+...|+.|++|.+|+...
T Consensus        14 ~~~~~al~d~~~~~~~el~~~~Gd~~~v~~~~~---~~w~~~~~~g~~gl~p~~~v~~~   69 (222)
T 3ehr_A           14 VKVFRALYTFEPRTPDELYIEEGDIIYITDMSD---TNWWKGTSKGRTGLIPSNYVAEQ   69 (222)
T ss_dssp             CEEEEESSCCCCSSTTBCCCCTTCEEEEEECCS---SSEEEEEETTEEEEEEHHHHHHH
T ss_pred             ceEEEEeCCcCCCCCCcccccCCCEEEEecccc---chhHhcccCCcceeechhhcccc
Confidence            346899999999999999999999999988754   45999999999999999887643

>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}

Probab=97.81  E-value=1.6e-05  Score=64.06  Aligned_cols=54  Identities=22%  Similarity=0.319  Sum_probs=46.0

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~  128 (137)
                      ...++|||||.   ..++++.+||+++++...+..   ||.++ .+|..|+||+.|+...+
T Consensus       283 ~~~V~alcdy~---~~e~~i~kge~~~L~~ns~~~---~W~V~~~~G~~~~vPavcf~ipp  337 (450)
T 3r6n_A          283 PIILRALCDYK---QDQKIVHKGDECILKDNNERS---KWYVTGPGGVDMLVPSVGLIIPP  337 (450)
T ss_dssp             CCEEEESSCEE---ETTEEECTTCEEEEEECSSSS---EEEEECSSSCCEEEEGGGEECCS
T ss_pred             CceEEEecccc---CCeeeEecCCEEEEecCCCCC---ceEEecCCCCeeccceeEEecCC
Confidence            45688999998   478999999999999876544   99999 67899999999987764

>2dyb_A Neutrophil cytosol factor 4; P40(PHOX), NADPH oxidase, oxidoreductase; HET: CAF; 3.15A {Homo sapiens}

Probab=97.68  E-value=1.6e-07  Score=73.08  Aligned_cols=57  Identities=11%  Similarity=0.165  Sum_probs=41.8

Q ss_pred             ceEEeeccCC----CCCCCCCC--CCCCEEEEEEecCCCCCCeEEEEeC---CeeEEEcCC-CeeecCCC
Q psy7685          71 AVYALYDYEA----NNTDELSF--KTGECIIVLRKGDENEREWWWSKLN---NKEGYVPRN-LLGLYPRV  130 (137)
Q Consensus        71 ~~~al~dy~~----~~~~eLs~--~~Gd~i~vl~~~~~~~~gWw~g~~~---g~~G~~P~~-yv~~~~~~  130 (137)
                      .++|+|+|.+    ....+|+|  ++||+|.|+.+.++   |||.|+.+   |+.|+||.+ ||+.+.+.
T Consensus       268 ~~~a~yd~~~~~~~~~e~eL~~~~~~GD~I~v~~~~d~---gWw~Ge~~g~~G~~glfP~~~~v~~~~~~  334 (341)
T 2dyb_A          268 LLKDLLELTRREFQREDIALNYRDAEGDLVRLLSDEDV---ALMVRQARGLPSQKRLFPWKLHITQKDNY  334 (341)
T ss_dssp             CHHHHHHHHHHHHTCSCEEEEEECSSSCEEECCSHHHH---HHHHHHHTTSCCBTTBCSSCEEEEECC--
T ss_pred             chhhhhhhhhhhcCCCcccccCCCCCCCEEEEeeecCC---CEeEEEECCCCCCCceecceeEEEecCCc
Confidence            3467888887    44555656  89999999988644   59999854   555699998 88877654

>2krs_A Probable enterotoxin; all beta, SH3, ENTD, CPF_0587, CPE0606, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium perfringens}

Probab=96.67  E-value=0.0049  Score=37.21  Aligned_cols=41  Identities=12%  Similarity=0.436  Sum_probs=33.8

Q ss_pred             CCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          87 SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        87 s~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      .+.+|+.+.|+...    .+|++.+.+|..||+...|+...+..+
T Consensus        26 ~l~~G~~v~v~~~~----~~W~kV~~~g~~GwV~~~yl~~~~~~~   66 (74)
T 2krs_A           26 TLRNNDKVEIIKEV----DGWYEIRFNGKVGYASKSYITIVNEGS   66 (74)
T ss_dssp             EEETTCEEEEEEEE----TTEEEEEETTEEEEECSSSEEESSSSC
T ss_pred             EECCCCEEEEEEEe----CCEEEEEECCeEEEEEhHHcCCCCCcc
Confidence            46679999999863    359999988999999999999876543

>2kt8_A Probable surface protein; SH3 family, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Clostridium perfringens} PDB: 2kyb_A

Probab=96.57  E-value=0.0043  Score=37.75  Aligned_cols=41  Identities=10%  Similarity=0.215  Sum_probs=34.1

Q ss_pred             CCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCC
Q psy7685          87 SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        87 s~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~  131 (137)
                      .+.+|+.+.|+...    .+|++.+.+|..||+...|+...+..+
T Consensus        28 ~l~~G~~v~vl~~~----~~W~kV~~~g~~GwV~~~yl~~~~~~~   68 (76)
T 2kt8_A           28 SLSGNTKVTIVGEE----GAFYKIEYKGSHGYVAKEYIKDIKDEV   68 (76)
T ss_dssp             EECTTCEEEEEEEE----TTEEEEEETTEEEEEEGGGEEEEECCC
T ss_pred             EECCCCEEEEEEEe----CCEEEEEECCEEEEEEhHHhCcCCCcc
Confidence            46789999999863    359999999999999999999876544

>2kq8_A Cell WALL hydrolase; GFT protein structure, NESG, PSI, SH3 domain, structural genomics, protein structure initiative; NMR {Bacillus thuringiensis serovarkonkukian}

Probab=95.99  E-value=0.0034  Score=37.50  Aligned_cols=38  Identities=18%  Similarity=0.401  Sum_probs=31.5

Q ss_pred             CCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          87 SFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        87 s~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      .+.+|+.+.|+...    .+|++.+.+|..||+...|+....
T Consensus        27 ~l~~G~~v~v~~~~----~~W~~V~~~G~~GwV~~~~l~~~~   64 (70)
T 2kq8_A           27 ALPQGQKVQVISEN----SGWSKINYNGQTGYIGTRYLSKLE   64 (70)
T ss_dssp             CCCSSSSCCCCEEE----TTEEEEEETTEEEEEETTSCSCCC
T ss_pred             EECCCCEEEEEEec----CCEEEEEECCEEEEEEhHHccchh
Confidence            56788888888762    359999999999999999987764

>1wfw_A Kalirin-9A; SH3 domain, neuron-specific GDP/GTP exchange factor, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.34.2.1

Probab=93.24  E-value=0.56  Score=27.98  Aligned_cols=54  Identities=24%  Similarity=0.397  Sum_probs=40.6

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eC----CeeEEEcCCCeee
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LN----NKEGYVPRNLLGL  126 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~----g~~G~~P~~yv~~  126 (137)
                      ..+.+.-||.+..++|++...|+++.++....-   ....+.  .+    ..+||+|..-+..
T Consensus         8 s~m~V~~dY~A~ke~eI~v~~ge~Vqila~nqq---nm~Lv~~~a~~q~paaegWvPG~vLg~   67 (74)
T 1wfw_A            8 STMTVIKDYYALKENEICVSQGEVVQVLAVNQQ---NMCLVYQPASDHSPAAEGWVPGSILAP   67 (74)
T ss_dssp             CEEECCSCBCCCSSSCCCBCTTCEEEEEEECTT---SEEEEEECSCSSSSSEEEEEEGGGCCB
T ss_pred             ccEEEEeeeeeeccceeccccCcEEEEEEecCc---ceEEEEeecCCCCccccCcccccEecc
Confidence            456678899999999999999999999987543   365554  22    3479999765443

>2jmc_A Spectrin alpha chain, brain and P41 peptide chimera; SPC-SH3, signaling protein; NMR {Gallus gallus}

Probab=92.72  E-value=0.066  Score=32.14  Aligned_cols=23  Identities=30%  Similarity=0.547  Sum_probs=20.1

Q ss_pred             CcceEEeeccCCCCCCCCCCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTG   91 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~G   91 (137)
                      ...++|+|||.++..+||+|.+.
T Consensus        52 ~~~~~alydy~a~~~dElsf~~~   74 (77)
T 2jmc_A           52 KELVLALYDYQESGDNAPSYSPP   74 (77)
T ss_dssp             CCEEEESSCCCCSSCCCCCSCCC
T ss_pred             CceEEECCCcCCCCCCccccCCC
Confidence            35789999999999999999863

>1g2b_A Spectrin alpha chain; capping protein, calcium-binding, duplication, repeat, SH3 domain, cytoskeleton, metal binding protein; 1.12A {Gallus gallus} SCOP: b.34.2.1 PDB: 1tud_A

Probab=90.31  E-value=0.13  Score=29.34  Aligned_cols=16  Identities=19%  Similarity=0.544  Sum_probs=13.8

Q ss_pred             CeeEEEcCCCeeecCC
Q psy7685         114 NKEGYVPRNLLGLYPR  129 (137)
Q Consensus       114 g~~G~~P~~yv~~~~~  129 (137)
                      |+.||||.+||+.+..
T Consensus         2 g~~G~~P~~yv~~~~~   17 (62)
T 1g2b_A            2 DRQGFVPAAYVKKLDS   17 (62)
T ss_dssp             CEEEEEEGGGEEECCC
T ss_pred             CCccccccceEeecCC
Confidence            6899999999998754

>3npf_A Putative dipeptidyl-peptidase VI; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: CSA GOL; 1.72A {Bacteroides ovatus} PDB: 3pvq_A

Probab=83.34  E-value=1.2  Score=33.54  Aligned_cols=37  Identities=19%  Similarity=0.305  Sum_probs=30.3

Q ss_pred             CCCCCCCEEEEEEecCCCCCCeEEEEe-CCeeEEEcCCCeeec
Q psy7685          86 LSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLY  127 (137)
Q Consensus        86 Ls~~~Gd~i~vl~~~~~~~~gWw~g~~-~g~~G~~P~~yv~~~  127 (137)
                      -.+..|+.+.|+++    + ||++.+. +|..||++..++..+
T Consensus        35 ~~l~~G~~v~Vl~~----~-gW~~V~~~dG~~GwV~~~~l~~~   72 (306)
T 3npf_A           35 TQALLGMPVKVLQY----N-GWYEIQTPDDYTGWVHRMVITPM   72 (306)
T ss_dssp             EEEETTCEEEEEEE----S-SEEEEECTTSCEEEEEGGGEEEE
T ss_pred             EEEcCCCEEEEEEE----C-CEEEEEcCCCCEEEEEhHHeeec
Confidence            34567999999986    1 4999995 899999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	137
d1ycsb2	63	b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [	3e-27
d1uhca_	79	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	1e-17
d1k4us_	62	b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId	4e-17
d1u06a1	55	b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chic	7e-17
d1ujya_	76	b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens	1e-16
d1gcqa_	56	b.34.2.1 (A:) Growth factor receptor-bound protein	1e-16
d1oota_	58	b.34.2.1 (A:) Hypothetical protein YFR024c {Baker'	2e-16
d1u5sa1	71	b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [Tax	2e-16
d1sema_	58	b.34.2.1 (A:) Growth factor receptor-bound protein	3e-16
d1j3ta_	74	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-16
d1utia_	57	b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona	6e-16
d1uj0a_	58	b.34.2.1 (A:) Signal transducing adaptor molecule	6e-16
d1uhfa_	69	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	8e-16
d1ng2a2	118	b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic	1e-15
d1udla_	98	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	1e-15
d1awwa_	67	b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Hom	3e-15
d1efna_	57	b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase,	4e-15
d1gria1	56	b.34.2.1 (A:1-56) Growth factor receptor-bound pro	4e-15
d1qcfa1	65	b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Hu	4e-15
d2hspa_	71	b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (	1e-14
d1arka_	60	b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo	1e-14
d1jo8a_	58	b.34.2.1 (A:) Actin binding protein ABP1 {Baker's	2e-14
d1opka1	57	b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domai	2e-14
d2iima1	62	b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 d	3e-14
d1zuua1	56	b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyc	4e-14
d1uffa_	93	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	4e-14
d1fmka1	64	b.34.2.1 (A:82-145) c-src protein tyrosine kinase	4e-14
d1ckaa_	57	b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse	4e-14
d1gl5a_	67	b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musc	6e-14
d1k9aa1	71	b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (cs	8e-14
d1bb9a_	83	b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicu	2e-13
d1i1ja_	106	b.34.2.1 (A:) Melanoma inhibitory activity protein	2e-13
d1ugva_	72	b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA062	3e-13
d1ue9a_	80	b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Hom	2e-12
d1spka_	72	b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RI	2e-12
d2v1ra1	67	b.34.2.1 (A:10-76) Peroxisomal membrane protein Pe	3e-12
d2rn8a1	53	b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus	6e-12
d1ng2a1	58	b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic	2e-11
d1i07a_	59	b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus	3e-11
d1wlpb1	53	b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic	3e-11
d1t0ha_	96	b.34.2.1 (A:) SH3-like domain of the L-type calciu	4e-11
d1ug1a_	92	b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIA	4e-11
d1gcqc_	69	b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mu	6e-10
d1phta_	83	b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-a	2e-09
d1wiea_	96	b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human	7e-09
d1kjwa1	96	b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicu	4e-08
d1wfwa_	74	b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [Ta	4e-08
d1vyva1	145	b.34.2.1 (A:71-215) SH3-like domain of the L-type	9e-07
d1vyua1	136	b.34.2.1 (A:39-174) SH3-like domain of the L-type	2e-05
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	5e-04

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.1 bits (234), Expect = 3e-27
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query: 66  ILNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG 125
           I+N G +YAL+DYE  N DEL  K G+C+ ++ + DE+E EWWW++LN+KEGYVPRNLLG
Sbjct: 1   IMNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLG 60

Query: 126 LYP 128
           LYP
Sbjct: 61  LYP 63

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.3 bits (172), Expect = 1e-17
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 2/64 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDE-NEREWWWSKLNNKEGYVPRNLLGLYPRV 130
            +A+Y ++A N +ELS    + + +L   D     EWW +++N K+GYVP N +      
Sbjct: 16  YFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTES- 74

Query: 131 QPSA 134
            PS+
Sbjct: 75  GPSS 78

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.2 bits (167), Expect = 4e-17
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 9/64 (14%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
           V AL+ YEA   ++L F+ G+ I+VL K +E    W   +   K G  P+        V+
Sbjct: 8   VEALFSYEATQPEDLEFQEGDIILVLSKVNEE---WLEGESKGKVGIFPKVF------VE 58

Query: 132 PSAT 135
            SAT
Sbjct: 59  DSAT 62

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]} Length = 55

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 67.4 bits (165), Expect = 7e-17
 Identities = 16/51 (31%), Positives = 32/51 (62%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALYDY+  +  E++ K G+ + +L   +++   WW  ++N+++G+VP  
Sbjct: 3   VLALYDYQEKSPREVTMKKGDILTLLNSTNKD---WWKVEVNDRQGFVPAA 50

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.6 bits (165), Expect = 1e-16
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A ++++  N DELS   G+ I V R  +     WW   LN + G+ P N
Sbjct: 13  VKARFNFKQTNEDELSVCKGDIIYVTRVEEGG---WWEGTLNGRTGWFPSN 60

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.6 bits (163), Expect = 1e-16
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V AL+D++     EL F+ G+ I V+   D N   WW    + + G  PRN
Sbjct: 4   VQALFDFDPQEDGELGFRRGDFIHVMDNSDPN---WWKGACHGQTGMFPRN 51

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.3 bits (162), Expect = 2e-16
 Identities = 17/49 (34%), Positives = 27/49 (55%), Gaps = 1/49 (2%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           ALY +    + +L F+ G+ I +L+K D     WW  ++N +EG  P N
Sbjct: 6   ALYSFAGEESGDLPFRKGDVITILKKSDSQND-WWTGRVNGREGIFPAN 53

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.8 bits (163), Expect = 2e-16
 Identities = 15/51 (29%), Positives = 26/51 (50%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V  LY + +   +EL+F+ GE + V+ K + +   W       + G VP+N
Sbjct: 9   VQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKN 59

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

 Score = 65.8 bits (161), Expect = 3e-16
 Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V AL+D+    + EL+FK G+ I ++ K D N   WW  +LNN+ G  P N
Sbjct: 5   VQALFDFNPQESGELAFKRGDVITLINKDDPN---WWEGQLNNRRGIFPSN 52

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (161), Expect = 4e-16
 Identities = 14/62 (22%), Positives = 29/62 (46%), Gaps = 4/62 (6%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
             AL  + A   + L+F   + I VL    E +  WW+ +++   G+ P++ + + P  +
Sbjct: 13  AQALCSWTAKKDNHLNFSKHDIITVL----EQQENWWFGEVHGGRGWFPKSYVKIIPGSE 68

Query: 132 PS 133
             
Sbjct: 69  SG 70

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (159), Expect = 6e-16
 Identities = 22/51 (43%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALYD+EA   DEL F++GE + VL   + +   WW  +L+NK G  P N
Sbjct: 4   ARALYDFEALEEDELGFRSGEVVEVLDSSNPS---WWTGRLHNKLGLFPAN 51

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 65.1 bits (159), Expect = 6e-16
 Identities = 23/51 (45%), Positives = 28/51 (54%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V ALYD+EA   +EL+FK GE I VL   D N   WW  + +   G  P N
Sbjct: 5   VRALYDFEAVEDNELTFKHGELITVLDDSDAN---WWQGENHRGTGLFPSN 52

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 8e-16
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALY Y +    +L+F  GE I+V +K      EWW   + ++ G  P N
Sbjct: 11  YIALYPYSSVEPGDLTFTEGEEILVTQKDG----EWWTGSIGDRSGIFPSN 57

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 118

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.8 bits (160), Expect = 1e-15
 Identities = 18/66 (27%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQ 131
             A+  Y A   DE+S   GE + V+ K  +    WW  + ++  GY P   L    +  
Sbjct: 17  YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYLQKSGQDV 73

Query: 132 PSATPQ 137
             A  Q
Sbjct: 74  SQAQRQ 79

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.3 bits (159), Expect = 1e-15
 Identities = 24/51 (47%), Positives = 30/51 (58%), Gaps = 3/51 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V A+YDY ANN DELSF  G+ I V+ K D +   WW  ++N   G  P N
Sbjct: 37  VIAMYDYAANNEDELSFSKGQLINVMNKDDPD---WWQGEINGVTGLFPSN 84

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (155), Expect = 3e-15
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
           V ALYDY   N ++L  + G+   +L + +     WW ++  N +EGY+P N
Sbjct: 11  VVALYDYMPMNANDLQLRKGDEYFILEESNL---PWWRARDKNGQEGYIPSN 59

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (153), Expect = 4e-15
 Identities = 22/55 (40%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 71  AVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           A++ ALYDYEA   D+LSF  GE   +L   +    +WW   S    + GY+P N
Sbjct: 1   ALFVALYDYEAITEDDLSFHKGEKFQILNSSEG---DWWEARSLTTGETGYIPSN 52

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (153), Expect = 4e-15
 Identities = 21/49 (42%), Positives = 35/49 (71%), Gaps = 2/49 (4%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           A YD++A   DELSFK G+ + VL   +E ++ W+ ++LN K+G++P+N
Sbjct: 5   AKYDFKATADDELSFKRGDILKVL--NEECDQNWYKAELNGKDGFIPKN 51

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.9 bits (153), Expect = 4e-15
 Identities = 24/53 (45%), Positives = 33/53 (62%), Gaps = 6/53 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           V ALYDYEA + ++LSF+ G+ ++VL +      EWW   S    KEGY+P N
Sbjct: 7   VVALYDYEAIHHEDLSFQKGDQMVVLEESG----EWWKARSLATRKEGYIPSN 55

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.1 bits (151), Expect = 1e-14
 Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKE-GYVPRN 122
           V AL+DY+A   DEL+F     I  + K +     WW      K+  + P N
Sbjct: 9   VKALFDYKAQREDELTFIKSAIIQNVEKQEGG---WWRGDYGGKKQLWFPSN 57

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.7 bits (150), Expect = 1e-14
 Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 6/56 (10%)

Query: 70  GAVY-ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
           G ++ A+YDY A + DE+SFK G+ II ++  DE    W +  +    + G +P N
Sbjct: 3   GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDEG---WMYGTVQRTGRTGMLPAN 55

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.3 bits (149), Expect = 2e-14
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 5/53 (9%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
             A YDY+A   +EL+F   + II +   D+   +WW  +L  +  +G  P N
Sbjct: 3   ATAEYDYDAAEDNELTFVENDKIINIEFVDD---DWWLGELEKDGSKGLFPSN 52

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (148), Expect = 2e-14
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 2/51 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALYD+ A+  + LS   GE + VL        EW  ++  N +G+VP N
Sbjct: 3   FVALYDFVASGDNTLSITKGEKLRVLGYNH--NGEWCEAQTKNGQGWVPSN 51

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 62

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 3e-14
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 6/53 (11%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWW--SKLNNKEGYVPRN 122
           V AL+ YE ++  +L F+ GE + +L +      EWW   S    +EG++P N
Sbjct: 9   VIALHSYEPSHDGDLGFEKGEQLRILEQSG----EWWKAQSLTTGQEGFIPFN 57

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.3 bits (146), Expect = 4e-14
 Identities = 10/49 (20%), Positives = 20/49 (40%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
            LY Y   + DE++   G+ I ++ +   +      +    + G VP  
Sbjct: 4   VLYAYVQKDDDEITITPGDKISLVARDTGSGWTKINNDTTGETGLVPTT 52

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.6 bits (149), Expect = 4e-14
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQPS 133
           ALY +EA N DE+SF +G+ I V  K    E  W +       G+ P N +   P  +  
Sbjct: 10  ALYPFEARNHDEMSFNSGDIIQVDEK-TVGEPGWLYGSFQGNFGWFPCNYVEKMPSSENE 68

Query: 134 ATPQ 137
               
Sbjct: 69  KAVS 72

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]} Length = 64

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (147), Expect = 4e-14
 Identities = 18/51 (35%), Positives = 28/51 (54%), Gaps = 5/51 (9%)

Query: 74  ALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
           ALYDYE+    +LSFK GE + ++   + +   WW +      + GY+P N
Sbjct: 7   ALYDYESRTETDLSFKKGERLQIVNNTEGD---WWLAHSLSTGQTGYIPSN 54

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 57

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.1 bits (146), Expect = 4e-14
 Identities = 16/52 (30%), Positives = 28/52 (53%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
           V AL+D+  N+ ++L FK G+ + +  K +E    WW ++    K G +P  
Sbjct: 4   VRALFDFNGNDEEDLPFKKGDILRIRDKPEEQ---WWNAEDSEGKRGMIPVP 52

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.2 bits (146), Expect = 6e-14
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRN 122
           V A+YD++A    +L  + G+  I+L K   N+  WW ++     EGY+P N
Sbjct: 5   VVAMYDFQATEAHDLRLERGQEYIILEK---NDLHWWRARDKYGSEGYIPSN 53

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (145), Expect = 8e-14
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 5/67 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRNLLGLYPRV 130
             A Y++      +L F  G+ + ++    +    W+ +K    +EG +P N +      
Sbjct: 9   CIAKYNFHGTAEQDLPFCKGDVLTIVAVTKDP--NWYKAKNKVGREGIIPANYVQKREG- 65

Query: 131 QPSATPQ 137
              A  +
Sbjct: 66  -VKAGTK 71

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 59.2 bits (143), Expect = 2e-13
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 12/63 (19%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWW-----------SKLNNKEGYV 119
           V A +DY A +TDEL  K G+ ++V+   + E + E W             +L    G  
Sbjct: 15  VQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVF 74

Query: 120 PRN 122
           P N
Sbjct: 75  PEN 77

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.7 bits (144), Expect = 2e-13
 Identities = 14/58 (24%), Positives = 21/58 (36%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR 129
             AL DY A +   L+   G+ + V  K     R +W   +           LG +P 
Sbjct: 24  AVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPS 81

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 3e-13
 Identities = 17/51 (33%), Positives = 21/51 (41%), Gaps = 2/51 (3%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
             ALY  +A +  ELSF  G     +    E    W    LN K G +P N
Sbjct: 13  AKALYACKAEHDSELSFTAGTVFDNVHPSQEP--GWLEGTLNGKTGLIPEN 61

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 2e-12
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDEN--EREWWWSKLNNKEGYVPRNLLGLY-P 128
                 Y A+ +++LS   G+ I++L+K      + E        ++G+ P + + L  P
Sbjct: 10  AQVTSAYVASGSEQLSLAPGQLILILKKNTSGWWQGELQARGKKRQKGWFPASHVKLLGP 69

Query: 129 RVQPSATP 136
             + ++ P
Sbjct: 70  SSERASGP 77

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]} Length = 72

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.4 bits (136), Expect = 2e-12
 Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 1/52 (1%)

Query: 72  VYALYDYEA-NNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRN 122
           V  ++ + A NN   LSF  G+ + +L   +++   +         G+ P +
Sbjct: 10  VKTIFPHTAGNNKTLLSFAQGDVLTLLIPEEKDGWLYGEHDTTKARGWFPSS 61

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 67

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.6 bits (134), Expect = 3e-12
 Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 4/55 (7%)

Query: 72  VYALYDYEANNTD-ELSFKTGECIIVLRKGDE--NEREWWWSKL-NNKEGYVPRN 122
             ALYD+   N + E++ K G+ + +L K D    + +WW  +  N   GY+P N
Sbjct: 8   ARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYN 62

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

 Score = 54.5 bits (131), Expect = 6e-12
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 4/52 (7%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNN-KEGYVPRN 122
           V ALYDY+ N+  EL+ +  E   +L   + +   WW  +  N  EGY P +
Sbjct: 1   VIALYDYQTNDPQELALRCDEEYYLLDSSEIH---WWRVQDKNGHEGYAPSS 49

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 58

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 2e-11
 Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
             A+ DYE  +  E++  TG+ + V+ K +     WW+ ++  K G++P + L
Sbjct: 5   YRAIADYEKTSGSEMALSTGDVVEVVEKSESG---WWFCQMKAKRGWIPASFL 54

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.4 bits (128), Expect = 3e-11
 Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
             + YD+ A N+ ELS    + + +L    +    W     +   G+VP N+L
Sbjct: 4   AKSKYDFVARNSSELSVMKDDVLEILDDRRQW---WKVRNASGDSGFVPNNIL 53

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 53

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (127), Expect = 3e-11
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
             A+  Y A   DE+S   GE + V+ K  +    WW  + ++  GY P   L
Sbjct: 3   YVAIKAYTAVEGDEVSLLEGEAVEVIHKLLDG---WWVIRKDDVTGYFPSMYL 52

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 53.8 bits (129), Expect = 4e-11
 Identities = 16/72 (22%), Positives = 29/72 (40%), Gaps = 13/72 (18%)

Query: 71  AVYALYDYEANNTDE-------LSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVP 120
           AV     Y A   D+       +SF+  + + V  K + +   WW  +L     + G++P
Sbjct: 23  AVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNND---WWIGRLVKEGCEIGFIP 79

Query: 121 RNLLGLYPRVQP 132
             +     R+Q 
Sbjct: 80  SPVKLENMRLQH 91

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (128), Expect = 4e-11
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 1/67 (1%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGD-ENEREWWWSKLNNKEGYVPRNLLGLYPRV 130
             A  ++ A    ++S   G+ + V++K D    +  W       +G+V  + L  Y   
Sbjct: 20  FQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPR 79

Query: 131 QPSATPQ 137
           +  +   
Sbjct: 80  RSHSDAS 86

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 6e-10
 Identities = 10/52 (19%), Positives = 19/52 (36%), Gaps = 4/52 (7%)

Query: 73  YALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRN 122
           Y +          L    G+ + + +   E+   WW  +    N+ G+ P N
Sbjct: 14  YGIPPPPGAFGPFLRLNPGDIVELTKAEAEH--NWWEGRNTATNEVGWFPCN 63

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 83

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (116), Expect = 2e-09
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 14/77 (18%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKG------------DENEREWWWSK--LNNKEG 117
             ALYDY+    +++    G+ + V +                 E  W         + G
Sbjct: 6   YRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERG 65

Query: 118 YVPRNLLGLYPRVQPSA 134
             P   +    R + S 
Sbjct: 66  DFPGTYVEYIGRKKISP 82

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (113), Expect = 7e-09
 Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 7/57 (12%)

Query: 74  ALYDYEA------NNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLL 124
           A Y Y        N   EL    G+ + V    DE+   +    L+ + G VP N +
Sbjct: 22  ARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMDEDGF-YEGELLDGQRGLVPSNFV 77

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 96

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.9 bits (108), Expect = 4e-08
 Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 72  VYALYDYEANNTD-----ELSFKTGECIIVLRKGDENEREWWWSKL------NNKEGYVP 120
           + AL+DY+           LSF+ G+ + V+  GDE    WW ++        +  G++P
Sbjct: 4   IRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDEE---WWQARRVHSDSETDDIGFIP 60

Query: 121 RNLL 124
               
Sbjct: 61  SKRR 64

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (107), Expect = 4e-08
 Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 11/69 (15%)

Query: 72  VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK------LNNKEGYVPRNLLG 125
           +  + DY A   +E+    GE + VL     N++                EG+VP ++L 
Sbjct: 10  MTVIKDYYALKENEICVSQGEVVQVLAV---NQQNMCLVYQPASDHSPAAEGWVPGSILA 66

Query: 126 LYPRVQPSA 134
            +    PS+
Sbjct: 67  PFSG--PSS 73

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.2 bits (101), Expect = 9e-07
 Identities = 14/76 (18%), Positives = 26/76 (34%), Gaps = 13/76 (17%)

Query: 71  AVYALYDYEANNTD-------ELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVP 120
           AV     Y     +        +SF   + + +  K + +   WW  +L     + G++P
Sbjct: 25  AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNND---WWIGRLVKEGCEIGFIP 81

Query: 121 RNLLGLYPRVQPSATP 136
             L     R+Q     
Sbjct: 82  SPLRLENIRIQQEQKR 97

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 136

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.6 bits (92), Expect = 2e-05
 Identities = 10/77 (12%), Positives = 24/77 (31%), Gaps = 13/77 (16%)

Query: 71  AVYALYDYEANNTD-------ELSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVP 120
           AV     Y     +        ++F+  + + +  K   +   WW  +L        ++P
Sbjct: 25  AVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSND---WWIGRLVKEGGDIAFIP 81

Query: 121 RNLLGLYPRVQPSATPQ 137
                   R++     +
Sbjct: 82  SPQRLESIRLKQEQKAR 98

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 5e-04
 Identities = 25/38 (65%), Positives = 31/38 (81%)

Query: 28  IFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKLG 65
           +FA T+SD +TAA KCEE EEG+  CS+FLY VQEK+G
Sbjct: 93  VFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMG 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	137
d1ycsb2	63	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1utia_	57	Grb2-related adaptor protein 2 (Mona/Gads) {Mouse	99.72
d1oota_	58	Hypothetical protein YFR024c {Baker's yeast (Sacch	99.72
d1gcqa_	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.72
d1sema_	58	Growth factor receptor-bound protein 2 (GRB2), N-	99.71
d1k4us_	62	p67phox {Human (Homo sapiens) [TaxId: 9606]}	99.7
d1uj0a_	58	Signal transducing adaptor molecule Stam2 {Mouse (	99.7
d1u06a1	55	alpha-Spectrin, SH3 domain {Chicken (Gallus gallus	99.7
d1u5sa1	71	Nck-2 {Human (Homo sapiens) [TaxId: 9606]}	99.69
d1j3ta_	74	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.69
d1k9aa1	71	Carboxyl-terminal src kinase (csk) {Human (Homo sa	99.69
d1uffa_	93	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.68
d1jo8a_	58	Actin binding protein ABP1 {Baker's yeast (Sacchar	99.68
d1wlpb1	53	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.68
d1udla_	98	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.67
d1opka1	57	Abl tyrosine kinase, SH3 domain {Mouse (Mus muscul	99.67
d1gria1	56	Growth factor receptor-bound protein 2 (GRB2), N-	99.67
d2v1ra1	67	Peroxisomal membrane protein Pex13p {Baker's yeast	99.67
d1ug1a_	92	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.66
d1ckaa_	57	C-Crk, N-terminal SH3 domain {Mouse (Mus musculus)	99.66
d2rn8a1	53	Bruton's tyrosine kinase {Mus musculus [TaxId: 100	99.66
d1ugva_	72	Olygophrenin-1 like protein (KIAA0621) {Human (Hom	99.66
d1ng2a1	58	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.66
d1gl5a_	67	tyrosine kinase tec {Mouse (Mus musculus) [TaxId:	99.66
d1arka_	60	SH3 domain from nebulin {Human (Homo sapiens) [Tax	99.66
d1uhca_	79	Hypothetical protein Baa76854.1 (KIAA1010) {Human	99.66
d1uhfa_	69	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.66
d1ue9a_	80	Intersectin 2 (KIAA1256) {Human (Homo sapiens) [Ta	99.65
d1i07a_	59	EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 1009	99.64
d1ujya_	76	Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606	99.64
d1spka_	72	BAI1-associated protein 2-like 1 (RIKEN cDNA 13000	99.64
d1efna_	57	Fyn proto-oncogene tyrosine kinase, SH3 domain {Hu	99.63
d1ng2a2	118	p47pox (neutrophil cytosolic factor 1) {Human (Hom	99.63
d1fmka1	64	c-src protein tyrosine kinase {Human (Homo sapiens	99.62
d1awwa_	67	Bruton's tyrosine kinase {Human (Homo sapiens) [Ta	99.62
d1zuua1	56	BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.61
d1qcfa1	65	Hemapoetic cell kinase Hck {Human (Homo sapiens) [	99.61
d1wfwa_	74	Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}	99.61
d2iima1	62	p56-lck tyrosine kinase, SH3 domain {Human (Homo s	99.61
d1wiea_	96	RIM binding protein 2, RIMBP2 {Human (Homo sapiens	99.58
d1phta_	83	Phosphatidylinositol 3-kinase (p85-alpha subunit,	99.58
d1i1ja_	106	Melanoma inhibitory activity protein {Human (Homo	99.55
d2hspa_	71	Phospholipase C, SH3 domain {Human (Homo sapiens)	99.55
d1gcqc_	69	Vav N-terminal SH3 domain {Mouse (Mus musculus) [T	99.55
d1bb9a_	83	Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 101	99.54
d1kjwa1	96	Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.47
d1t0ha_	96	SH3-like domain of the L-type calcium channel {Rab	99.45
d1vyva1	145	SH3-like domain of the L-type calcium channel {Rat	99.27
d1vyua1	136	SH3-like domain of the L-type calcium channel {Rat	99.03
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1ri9a_	77	Fyn-binding protein (T-cell adapter protein adap)	96.1
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	89.54
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	84.12
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	81.73

>d1ycsb2 b.34.2.1 (B:457-519) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=8e-20  Score=108.94  Aligned_cols=62  Identities=61%  Similarity=1.349  Sum_probs=55.6

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      ++.+.++|+|||.++.++||+|++||+|.|+++.+++..|||.|+.+|++|+||++||+.+|
T Consensus         2 ~n~g~v~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~gW~~g~~~g~~G~~P~~yv~~~P   63 (63)
T d1ycsb2           2 MNKGVIYALWDYEPQNDDELPMKEGDCMTIIHREDEDEIEWWWARLNDKEGYVPRNLLGLYP   63 (63)
T ss_dssp             TGGGEEEESSCBCCSSTTBCCBCSSCEEEECCCCTTSCSSEEEEEETTEEEEEEGGGEECCC
T ss_pred             CcCCEEEEeeCCCCCCCCCcCCCCCCEEEEEEecCCCCCCEEEEEECCeEEEEchHHhEeCc
Confidence            35567999999999999999999999999998866556689999999999999999999875

>d1utia_ b.34.2.1 (A:) Grb2-related adaptor protein 2 (Mona/Gads) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Grb2-related adaptor protein 2 (Mona/Gads)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=7.3e-18  Score=98.38  Aligned_cols=55  Identities=40%  Similarity=0.729  Sum_probs=50.4

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      .+++|+|||.++.++||+|++||+|.|++..++   |||.|+.+|+.|+||++||+++
T Consensus         2 ~yarAlydy~~~~~~eLs~~~Gd~i~v~~~~~~---~Ww~g~~~g~~G~~P~~yve~i   56 (57)
T d1utia_           2 RWARALYDFEALEEDELGFRSGEVVEVLDSSNP---SWWTGRLHNKLGLFPANYVAPM   56 (57)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSS---SEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCCCCcCCcCCCCCCEEEEeEEcCC---CEEEEEECCcEEEEEHHHEEEc
Confidence            368999999999999999999999999987643   5999999999999999999976

>d1oota_ b.34.2.1 (A:) Hypothetical protein YFR024c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein YFR024c
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=9.5e-18  Score=98.21  Aligned_cols=57  Identities=32%  Similarity=0.785  Sum_probs=51.3

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ++++|+|+|.++.++||+|++||+|.|+++.+. ..+||.++.+|++||||.+||+.|
T Consensus         2 P~~~Alydy~a~~~~ELs~~~Gd~v~vl~~~~~-~~~W~~~~~~g~~G~vP~~yve~i   58 (58)
T d1oota_           2 PKAVALYSFAGEESGDLPFRKGDVITILKKSDS-QNDWWTGRVNGREGIFPANYVELV   58 (58)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECCSC-TTSEEEEEETTEEEEEEGGGEEEC
T ss_pred             CeEEEccCCCCCCCCCccCCCCCEEEEEEeecC-CCCEEEEEECCcEEEEcHHHEEEC
Confidence            469999999999999999999999999988653 346999999999999999999975

>d1gcqa_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=8.3e-18  Score=97.80  Aligned_cols=55  Identities=31%  Similarity=0.671  Sum_probs=50.0

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      .+++|||+|.++.++||+|++||+|.|+++.++   |||.++.+|+.|+||.+||+++
T Consensus         2 tyv~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~---~W~~g~~~g~~G~~P~~yv~~v   56 (56)
T d1gcqa_           2 TYVQALFDFDPQEDGELGFRRGDFIHVMDNSDP---NWWKGACHGQTGMFPRNYVTPV   56 (56)
T ss_dssp             EEEEESSCBCCCSTTBCCBCTTCEEEEEECCSS---SEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECcCCCcCCcCCcCCCCCCEEEEEEecCC---CEEEEEECCeEEEEEHhHEEEC
Confidence            368999999999999999999999999987643   5999999999999999999875

>d1sema_ b.34.2.1 (A:) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Caenorhabditis elegans, SEM-5 [TaxId: 6239]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Caenorhabditis elegans, SEM-5 [TaxId: 6239]

Probab=99.71  E-value=1.7e-17  Score=97.12  Aligned_cols=55  Identities=38%  Similarity=0.797  Sum_probs=50.6

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      ..++|||+|.++.+++|+|++||+|.|++..+   .|||.|+.+|+.|+||.+||+++
T Consensus         3 ~~~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~---~~W~~g~~~g~~G~~P~~yvep~   57 (58)
T d1sema_           3 KFVQALFDFNPQESGELAFKRGDVITLINKDD---PNWWEGQLNNRRGIFPSNYVCPY   57 (58)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSS---SSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC---CCEEEEEECCeEEEEEhhhEEEC
Confidence            46899999999999999999999999999864   35999999999999999999976

>d1k4us_ b.34.2.1 (S:) p67phox {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p67phox
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=7.8e-18  Score=99.85  Aligned_cols=58  Identities=33%  Similarity=0.583  Sum_probs=52.4

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      .+..++|||+|.++.+++|+|++||+|.|++..++   |||.|+.+|+.||||.+||++..
T Consensus         4 ~g~~v~Aly~y~a~~~~eLsf~~Gd~i~vl~~~~~---~Ww~g~~~g~~G~~P~~yVe~~~   61 (62)
T d1k4us_           4 KGSQVEALFSYEATQPEDLEFQEGDIILVLSKVNE---EWLEGESKGKVGIFPKVFVEDSA   61 (62)
T ss_dssp             CCEEEECCSCBCCCSSSBCCBCSSCEEEEEEESSS---SCEEEECSSCEEEECGGGCCCSC
T ss_pred             CCCEEEECCCCCCCCcCCcCCCCCCEEEEeEEcCC---CEEEEEECCcEEEEchHHeEECC
Confidence            45679999999999999999999999999998654   59999999999999999998763

>d1uj0a_ b.34.2.1 (A:) Signal transducing adaptor molecule Stam2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Signal transducing adaptor molecule Stam2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.2e-17  Score=97.73  Aligned_cols=55  Identities=40%  Similarity=0.723  Sum_probs=49.9

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeee
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  126 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~  126 (137)
                      +.+++|+|+|.++.++||+|++||+|.|++..++   |||.++.+|+.||||++||+.
T Consensus         2 ~rr~~Alydy~~~~~~eLsf~~Gd~i~v~~~~~~---~W~~g~~~g~~G~~P~~yV~~   56 (58)
T d1uj0a_           2 ARRVRALYDFEAVEDNELTFKHGELITVLDDSDA---NWWQGENHRGTGLFPSNFVTT   56 (58)
T ss_dssp             CEEEEESSCBCCCSTTBCCBCTTCEEEEEECCSS---SEEEEEETTEEEEEEGGGEES
T ss_pred             CCEEEECCCCCCCCcCCcCCCCCCEEEEeEEeCC---CEEEEEECCeEEEEehHhEee
Confidence            3579999999999999999999999999987643   599999999999999999974

>d1u06a1 b.34.2.1 (A:7-61) alpha-Spectrin, SH3 domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: alpha-Spectrin, SH3 domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.70  E-value=1.8e-17  Score=95.95  Aligned_cols=54  Identities=30%  Similarity=0.770  Sum_probs=49.5

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      .++|+|+|.++.+++|+|++||+|.|+++.+   .|||.++.+|+.|+||++||+.+
T Consensus         2 ~~vAl~dy~~~~~~eLs~~~Gd~v~v~~~~~---~~Ww~g~~~g~~G~~P~~yv~~i   55 (55)
T d1u06a1           2 LVLALYDYQEKSPREVTMKKGDILTLLNSTN---KDWWKVEVNDRQGFVPAAYVKKL   55 (55)
T ss_dssp             EEEECSCBCCCSTTBCCBCTTCEEEEEECCS---SSEEEEEETTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCccCCCCCEEEEeEEcC---CCEEEEEECCeEEEEeHHHEEEC
Confidence            4789999999999999999999999998864   35999999999999999999875

>d1u5sa1 b.34.2.1 (A:1-71) Nck-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Nck-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.1e-17  Score=99.17  Aligned_cols=62  Identities=29%  Similarity=0.572  Sum_probs=54.1

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~  130 (137)
                      ....++|||||.++.++||+|++||+|.|+.+.++ +.|||.++ .+|+.|+||.+||+.++..
T Consensus         5 ~l~~~~Alydf~~~~~~eLs~~~Gd~i~vl~~~~~-~~~Ww~~~~~~G~~G~vP~~yv~~~~~~   67 (71)
T d1u5sa1           5 VLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPEN-DPEWWKCKNARGQVGLVPKNYVVVLSDG   67 (71)
T ss_dssp             SSSEEEESSCCCCCSSSBCCCCSSCCEEEEECCCT-TTCEEEEEETTTEEEEEETTSEEECCCS
T ss_pred             ccEEEEECccCCCCCCCEeeECCCCEEEEEEcccC-CCCeEEEEECCCCEEEEChHHEEECCCC
Confidence            34568999999999999999999999999987543 35799998 7899999999999999763

>d1j3ta_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=3.1e-17  Score=100.48  Aligned_cols=61  Identities=25%  Similarity=0.616  Sum_probs=54.2

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ...+++|||+|.++.++||+|++||+|.|+++. +   +||+++.+|++||||.+||+.+.....
T Consensus         9 ~~~~~~alydy~a~~~~ELs~~~Gd~i~vl~~~-~---~ww~g~~~g~~G~fP~~yve~i~~~~~   69 (74)
T d1j3ta_           9 ENLKAQALCSWTAKKDNHLNFSKHDIITVLEQQ-E---NWWFGEVHGGRGWFPKSYVKIIPGSES   69 (74)
T ss_dssp             CCCEEEESSCBCCCSTTBCCBCTTCEEEEEEEC-S---SEEEEESTTCCCEEEGGGEEECCCSTT
T ss_pred             CCeEEEEccCCCCCCCCEecCCCCCEEEEEEcc-C---CeEEEEECCcEEEEchhhEEECCCCCC
Confidence            456799999999999999999999999999873 3   499999999999999999999976543

>d1k9aa1 b.34.2.1 (A:6-76) Carboxyl-terminal src kinase (csk) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Carboxyl-terminal src kinase (csk)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4e-17  Score=99.18  Aligned_cols=62  Identities=19%  Similarity=0.443  Sum_probs=53.6

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCC
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~  130 (137)
                      +.+.+++|+|+|.++.++||+|++||+|.|+.+.+  +.+||.++ .+|+.||||.+||+.+...
T Consensus         4 p~g~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~--~~~W~~~~~~~g~~G~~P~~yve~~~~~   66 (71)
T d1k9aa1           4 PSGTECIAKYNFHGTAEQDLPFCKGDVLTIVAVTK--DPNWYKAKNKVGREGIIPANYVQKREGV   66 (71)
T ss_dssp             CTTCEEEESSCBCCSSSSBCCBCTTCEEEEEEECS--STTEEEEECTTCCEEEEEGGGEEECCCC
T ss_pred             CCCCEEEEccCCCCCCCCCccCCCCCEEEEeEecc--CCCEEEEEeCCCCEEEEchHHeEEcccC
Confidence            35678999999999999999999999999998754  34699999 5689999999999998654

>d1uffa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.6e-17  Score=102.32  Aligned_cols=61  Identities=33%  Similarity=0.574  Sum_probs=53.5

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ....++|||+|.++..+||+|++||+|.|+.+... +.+||.++.+|+.||||.+||+.+..
T Consensus         4 ~~~~~rAlydy~~~~~~ELs~~~Gd~v~Vl~~~~~-~~~w~~~~~~g~~G~~P~~Yve~~~~   64 (93)
T d1uffa_           4 GSSGYRALYPFEARNHDEMSFNSGDIIQVDEKTVG-EPGWLYGSFQGNFGWFPCNYVEKMPS   64 (93)
T ss_dssp             SCCCEEESSCBCCCSSSCCCBCTTCEEEECSSCCC-SSSEEEEEETTEEEEEETTTEEECCS
T ss_pred             CCeEEEECccCCCCCCCCccCcCCCEEEEEEeccC-CCCEEEEEeCCcEEEEchHHEEECCC
Confidence            34579999999999999999999999999987543 35699999999999999999999854

>d1jo8a_ b.34.2.1 (A:) Actin binding protein ABP1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Actin binding protein ABP1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.68  E-value=4.2e-17  Score=95.37  Aligned_cols=55  Identities=31%  Similarity=0.601  Sum_probs=49.4

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~  127 (137)
                      ++++|+|+|.++.++||+|++||+|.|+++.++   |||.++  .+|+.|+||++||+.+
T Consensus         1 P~~~Alydy~~~~~~eLs~~~Gd~i~v~~~~~~---~Ww~~~~~~~g~~G~~P~~yVe~i   57 (58)
T d1jo8a_           1 PWATAEYDYDAAEDNELTFVENDKIINIEFVDD---DWWLGELEKDGSKGLFPSNYVSLG   57 (58)
T ss_dssp             CCEEESSCBCCCSTTBCCBCTTCEEEEEECCSS---SEEEEEETTTCCEEEEEGGGEEEC
T ss_pred             CEEEEccCCCCCCcCCcCCCCCCEEEEEEEcCC---CEEEEEECCCCCEEEEchHHEEEc
Confidence            368999999999999999999999999988643   599998  5789999999999986

>d1wlpb1 b.34.2.1 (B:229-281) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=5.1e-17  Score=93.37  Aligned_cols=52  Identities=31%  Similarity=0.547  Sum_probs=47.7

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCee
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLG  125 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~  125 (137)
                      .++|+|+|.++.++||+|++||+|.|+++.++   |||.|+.+|+.||||++||+
T Consensus         2 ~yval~~y~a~~~~eLs~~~Gd~v~vl~~~~~---gWw~g~~~g~~G~~P~~yve   53 (53)
T d1wlpb1           2 PYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLD---GWWVIRKDDVTGYFPSMYLQ   53 (53)
T ss_dssp             EEEECSCBCCCSSSBCCBCTTCEEEEEECCTT---SSEEEESSSCEEEECSTTEE
T ss_pred             eEEEeeeECCCCCCEecCCCCCEEEEEeecCC---ceEEEEECCcEeEecHHhCC
Confidence            46899999999999999999999999988643   59999999999999999986

>d1udla_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2e-17  Score=106.40  Aligned_cols=59  Identities=41%  Similarity=0.740  Sum_probs=53.3

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ..+++|||||.++..+||+|++||+|.|+++.++   |||+++.+|++||||.+||+.+...
T Consensus        34 ~~~~~Alydy~a~~~~ELsf~~Gd~i~Vl~~~~~---gWw~g~~~g~~G~~P~nyVe~~~~~   92 (98)
T d1udla_          34 VCQVIAMYDYAANNEDELSFSKGQLINVMNKDDP---DWWQGEINGVTGLFPSNYVKMTTDS   92 (98)
T ss_dssp             SEEEEESSCCCCSSTTSCCCCTTCEEEECBCCSS---SEEBCBSSSCBCCEETTSEEECCCC
T ss_pred             ccEEEEccCCCCCCCCEeeEcCCCEEEEeEecCC---CeEEEEECCeEEEEchHHEEECCCC
Confidence            4569999999999999999999999999987643   5999999999999999999998764

>d1opka1 b.34.2.1 (A:83-139) Abl tyrosine kinase, SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Abl tyrosine kinase, SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=6.9e-17  Score=94.15  Aligned_cols=55  Identities=33%  Similarity=0.537  Sum_probs=49.3

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      .++|||+|.++.++||+|++||+|.|+.+.+  +.+||.++.+|++||||++||+++
T Consensus         2 ~~vAlydy~a~~~~eLs~~~Gd~i~vl~~~~--~~~W~~~~~~g~~G~~P~~yv~~v   56 (57)
T d1opka1           2 LFVALYDFVASGDNTLSITKGEKLRVLGYNH--NGEWCEAQTKNGQGWVPSNYITPV   56 (57)
T ss_dssp             EEEESSCBCCCSTTBCCBCTTCEEEEEEECT--TSSEEEEECSSCEEEEEGGGEEES
T ss_pred             EEEECccCCCCCcCCcCCCCCCEEEEeEecC--CCCEEEEEECCCEeEEchhheEEC
Confidence            4799999999999999999999999998854  336888999999999999999986

>d1gria1 b.34.2.1 (A:1-56) Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Growth factor receptor-bound protein 2 (GRB2), N- and C-terminal domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=2.9e-17  Score=95.47  Aligned_cols=54  Identities=37%  Similarity=0.799  Sum_probs=44.5

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeee
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGL  126 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~  126 (137)
                      .++|+|||.++..+||+|++||+|.|+.+..  +.+||.++.+|+.||||+|||+.
T Consensus         2 ~a~Alydy~a~~~~ELs~~~Gd~v~v~~~~~--~~~W~~~~~~g~~G~vP~nyvev   55 (56)
T d1gria1           2 EAIAKYDFKATADDELSFKRGDILKVLNEEC--DQNWYKAELNGKDGFIPKNYIEM   55 (56)
T ss_dssp             EEEECSCBCCCSSSCCCBCTTCEEEC--------CCEEEEESSSCEEEEEGGGEEC
T ss_pred             EEEEeeCCCCCCCCCcCCCCCCEEEEEeccC--CCCeEEEEECCcEEEEehhhEEE
Confidence            4899999999999999999999999887643  34689899999999999999974

>d2v1ra1 b.34.2.1 (A:10-76) Peroxisomal membrane protein Pex13p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Peroxisomal membrane protein Pex13p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=3.5e-17  Score=98.40  Aligned_cols=59  Identities=31%  Similarity=0.679  Sum_probs=49.7

Q ss_pred             CcceEEeeccCCCCCC-CCCCCCCCEEEEEEecCC--CCCCeEEEE-eCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTD-ELSFKTGECIIVLRKGDE--NEREWWWSK-LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~-eLs~~~Gd~i~vl~~~~~--~~~gWw~g~-~~g~~G~~P~~yv~~~  127 (137)
                      ..+++|+|+|.++..+ ||+|++||+|.|+++.+.  ...|||.++ .+|+.|+||+|||+.+
T Consensus         5 ~~~~~Alydy~~~~~~~ELs~~~Gd~i~vl~~~d~~~~~~~Ww~g~~~~G~~G~~P~nyve~i   67 (67)
T d2v1ra1           5 LEFARALYDFVPENPEMEVALKKGDLMAILSKKDPLGRDSDWWKVRTKNGNIGYIPYNYIEII   67 (67)
T ss_dssp             CEEEEESSCBCCSSTTTBCCBCTTCEEEEEEEECTTSCEEEEEEEECTTSCEEEEEGGGEEEC
T ss_pred             CEEEEECccCCCCCCCCEeCCCCCCEEEEEEeecCCCcCCCeEEEEeCCCCEEEEEHHHEEEC
Confidence            3469999999998765 999999999999987542  124699999 6899999999999975

>d1ug1a_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.4e-16  Score=101.28  Aligned_cols=65  Identities=18%  Similarity=0.311  Sum_probs=55.9

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCC-CCCCeEEEEeCCeeEEEcCCCeeecCCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDE-NEREWWWSKLNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~-~~~gWw~g~~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ....++|+|+|.++..+||+|++||+|.|+++.+. +..+||+++.+|++||||.+||+.+....+
T Consensus        16 ~~~~~~a~~~f~a~~~~eLs~~~Gd~v~vl~~~d~~~~~~Ww~~~~~g~~G~~P~~yv~~~~~~~~   81 (92)
T d1ug1a_          16 PEKLFQAERNFNAAQDLDVSLLEGDLVGVIKKKDPMGSQNRWLIDNGVTKGFVYSSFLKPYNPRRS   81 (92)
T ss_dssp             GGGEEEESSCCCCCSSSCCCCCTTCEEEEEESCCTTSCSSEEEEECSSSEEEEEGGGEEECCCCSS
T ss_pred             CCeEEEEcCCcCCCCCCeEEEecccEEEEEEcccccccCCceEEEecccEEEEEhhhceecCCccc
Confidence            34568999999999999999999999999998543 235799999999999999999999875443

>d1ckaa_ b.34.2.1 (A:) C-Crk, N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: C-Crk, N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=6.3e-17  Score=94.30  Aligned_cols=54  Identities=28%  Similarity=0.654  Sum_probs=48.7

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeee
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGL  126 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~  126 (137)
                      ..++|+|||.++.+++|+|++||+|.|+.+.+   .+||.++ .+|+.|+||++||++
T Consensus         2 ~~v~Alydy~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~~~~~~g~~G~vP~~yve~   56 (57)
T d1ckaa_           2 EYVRALFDFNGNDEEDLPFKKGDILRIRDKPE---EQWWNAEDSEGKRGMIPVPYVEK   56 (57)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEEEECSS---SSEEEEECTTSCEEEEEGGGEEC
T ss_pred             CEEEECCCCCcCCcCCcCCCCCCEEEEEEEcC---CCeEEEEECCCCEEEEcHHHeEE
Confidence            36899999999999999999999999998864   4599999 678999999999986

>d2rn8a1 b.34.2.1 (A:176-228) Bruton's tyrosine kinase {Mus musculus [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Mus musculus [TaxId: 10090]

Probab=99.66  E-value=4.8e-17  Score=93.49  Aligned_cols=52  Identities=37%  Similarity=0.717  Sum_probs=47.0

Q ss_pred             eEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeee
Q psy7685          72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGL  126 (137)
Q Consensus        72 ~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~  126 (137)
                      ++|+|+|.++.++||+|++||+|.|+++.+   .+||.++ .+|+.|+||++||++
T Consensus         1 V~Alydy~a~~~~eLs~~~Gd~~~vl~~~~---~~Ww~~~~~~g~~G~vP~~yv~e   53 (53)
T d2rn8a1           1 VIALYDYQTNDPQELALRCDEEYYLLDSSE---IHWWRVQDKNGHEGYAPSSYLVE   53 (53)
T ss_dssp             EEESSCCCCSSTTBCCCCTTCEEEECCCSC---SSCEEEECTTSCEEEECGGGEEE
T ss_pred             CEEeeeECCCCCCeeeECCCCEEEEeEEcC---CCeEEEEeCCCCEEEEeHHHEeC
Confidence            589999999999999999999999998754   4599999 788999999999974

>d1ugva_ b.34.2.1 (A:) Olygophrenin-1 like protein (KIAA0621) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Olygophrenin-1 like protein (KIAA0621)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3.8e-17  Score=99.57  Aligned_cols=60  Identities=28%  Similarity=0.452  Sum_probs=53.2

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      +..+++|||+|.++..+||+|++||+|.|++..+  +.+||.++.+|+.|+||.+||+.+..
T Consensus         9 p~~~~~alydy~~~~~~eLs~~~Gd~i~v~~~~~--~~~W~~g~~~g~~G~~P~~yve~i~~   68 (72)
T d1ugva_           9 PFRKAKALYACKAEHDSELSFTAGTVFDNVHPSQ--EPGWLEGTLNGKTGLIPENYVEFLSG   68 (72)
T ss_dssp             SCCCEEESSCBCCCSSSBCCBCTTCEEBSCCBCS--STTEEEEESSSCEEEEEGGGEEECCS
T ss_pred             CCEEEEEcccCCCCCCCEecCCCCCEEEEeeccC--CCCEEEEEeCCCEEEEchHHEEECCC
Confidence            4567999999999999999999999999988754  34699999999999999999999965

>d1ng2a1 b.34.2.1 (A:157-214) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.9e-17  Score=96.89  Aligned_cols=55  Identities=27%  Similarity=0.691  Sum_probs=50.2

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~  127 (137)
                      .+++|+|||.++.+++|+|++||+|.|+++.+   .+||.++.+|+.||||++||+.+
T Consensus         3 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~---~~Ww~~~~~g~~G~~P~~yve~l   57 (58)
T d1ng2a1           3 QTYRAIADYEKTSGSEMALSTGDVVEVVEKSE---SGWWFCQMKAKRGWIPASFLEPL   57 (58)
T ss_dssp             EEEECSSCBCCSSTTCCCBCTTCEEEEEECCT---TSCCEEEECCCCCCCCGGGCCCS
T ss_pred             eEEEECccCcCCCCCCcCCCCCCEEEEEEecC---CCeEEEEECCCCcEEcHhHEEEC
Confidence            46899999999999999999999999998864   45999999999999999999876

>d1gl5a_ b.34.2.1 (A:) tyrosine kinase tec {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: tyrosine kinase tec
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=1.6e-16  Score=95.43  Aligned_cols=60  Identities=30%  Similarity=0.620  Sum_probs=52.5

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCCCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~~~  132 (137)
                      ..++|+|+|.+...++|+|++||+|.|+.+.+   .+||.++ .+|+.||||++||+.+....+
T Consensus         3 ~~v~Alydf~a~~~~eLs~~~Gd~i~v~~~~~---~~Ww~~~~~~g~~G~~P~~yV~~~~~~~~   63 (67)
T d1gl5a_           3 EIVVAMYDFQATEAHDLRLERGQEYIILEKND---LHWWRARDKYGSEGYIPSNYVTGKKSNNL   63 (67)
T ss_dssp             SCEEECSCBCCSSSSBCCBCTTCEEEEEECSS---SSEEEEECSSSCEEEEETTSEESSTTTTT
T ss_pred             EEEEECCCCCCCCcCCcCCCCCCEEEEEEecC---CCcEEEEECCCCEEEEEhHHeEEecCCCc
Confidence            45899999999999999999999999998864   3599998 778999999999998865443

>d1arka_ b.34.2.1 (A:) SH3 domain from nebulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3 domain from nebulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.9e-17  Score=95.74  Aligned_cols=56  Identities=34%  Similarity=0.634  Sum_probs=50.0

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeec
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~  127 (137)
                      +..++|+|||.++.++||+|++||+|.|+.+.++   +||.++  .+|+.|+||+|||+.+
T Consensus         3 G~~~rAl~df~~~~~~eLs~~~Gd~i~v~~~~~~---~W~~~~~~~~g~~G~vP~nyve~i   60 (60)
T d1arka_           3 GKIFRAMYDYMAADADEVSFKDGDAIINVQAIDE---GWMYGTVQRTGRTGMLPANYVEAI   60 (60)
T ss_dssp             CCCEECCSCCCCSSSSBCCCCTTCEECCSEECSS---SEEEEECTTTCCEEEEETTTCEEC
T ss_pred             CcEEEECccCCCCCCCCcCCCCCCEEEEEEEcCC---CEEEEEECCCCCEEEEcHHHEEEC
Confidence            4568999999999999999999999999988643   599999  4789999999999875

>d1uhca_ b.34.2.1 (A:) Hypothetical protein Baa76854.1 (KIAA1010) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hypothetical protein Baa76854.1 (KIAA1010)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.8e-16  Score=98.10  Aligned_cols=62  Identities=32%  Similarity=0.637  Sum_probs=53.9

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCC-CCCCeEEEEeCCeeEEEcCCCeeecCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDE-NEREWWWSKLNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~-~~~gWw~g~~~g~~G~~P~~yv~~~~~~  130 (137)
                      ...++|||+|.++.++||+|++||+|.|+++.+. ...|||.++.+|+.||||.+||+.++..
T Consensus        13 ~~~~~Alydy~a~~~~ELs~~~Gd~i~vl~~~~~~~~~~W~~g~~~g~~G~vP~~yv~~~~~~   75 (79)
T d1uhca_          13 NQVYFAVYTFKARNPNELSVSANQKLKILEFKDVTGNTEWWLAEVNGKKGYVPSNYIRKTESG   75 (79)
T ss_dssp             SCCEEESSCBCCCSSSBCCBCTTCEEEEEESCCTTSCTTEEEEESSSCEEEEEGGGEEECCSS
T ss_pred             CEEEEECccCCCCCCCCccCCCCCEEEEEEeecCCCCCCEEEEEECCCEEEEehhhEEECCCC
Confidence            4568999999999999999999999999987432 2357999999999999999999998754

>d1uhfa_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.9e-17  Score=98.25  Aligned_cols=58  Identities=29%  Similarity=0.603  Sum_probs=52.2

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      .+..++|+|+|.++.++||+|++||+|.|+++. +   +||+++.+|++||||.+||+.+..
T Consensus         7 ~~~~~vAl~~y~~~~~~eLs~~~Gd~v~vl~~~-~---~Ww~~~~~g~~G~vP~~yv~~~~~   64 (69)
T d1uhfa_           7 GGEEYIALYPYSSVEPGDLTFTEGEEILVTQKD-G---EWWTGSIGDRSGIFPSNYVKPKDS   64 (69)
T ss_dssp             CSEEEECSSCBCCSSSSBCCBCTTCEEEECEEE-T---TEEEECSTTCCEEECGGGCEECCC
T ss_pred             CCcEEEECccCCCCCcCCcCCCCCCEEEEEEec-C---CEEEEEECCcEEEEchhhEEECCC
Confidence            456799999999999999999999999999873 2   499999999999999999999864

>d1ue9a_ b.34.2.1 (A:) Intersectin 2 (KIAA1256) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Intersectin 2 (KIAA1256)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=3.8e-16  Score=96.77  Aligned_cols=61  Identities=23%  Similarity=0.535  Sum_probs=52.4

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe-----CCeeEEEcCCCeeecCCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-----NNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~-----~g~~G~~P~~yv~~~~~~~  131 (137)
                      .+.+++|||+|.++.++||+|++||+|.|+++.++   |||+++.     .++.||||.+||+.+....
T Consensus         6 ~g~~~~al~~y~~~~~~eLs~~~Gd~i~Vl~~~~~---~Ww~g~~~~~~~~~~~G~~P~~yv~~~~~~~   71 (80)
T d1ue9a_           6 SGEIAQVTSAYVASGSEQLSLAPGQLILILKKNTS---GWWQGELQARGKKRQKGWFPASHVKLLGPSS   71 (80)
T ss_dssp             CCEEEEECSCCCCCSTTBCCCCTTCEEEEEEECSS---SEEEEEECSCCSSCCEEEEETTSEEECCSCC
T ss_pred             CCCEEEECcCCCCCCCCEeeEcCCCEEEEEEEeCC---CeEEEEEccCCCCCCEeEEEheeEEECCCCC
Confidence            35679999999999999999999999999998644   5999984     3568999999999987543

>d1i07a_ b.34.2.1 (A:) EPS8 SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: EPS8 SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1e-16  Score=93.99  Aligned_cols=56  Identities=27%  Similarity=0.598  Sum_probs=49.9

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      .+++|+|||.++..+||+|++||+|.|++.. +   +||.++ .+|+.|+||+|||+.+..
T Consensus         2 ~~a~alydf~a~~~~ELs~~~Gd~i~v~~~~-~---~ww~~~~~~g~~G~~P~nyve~i~~   58 (59)
T d1i07a_           2 KYAKSKYDFVARNSSELSVMKDDVLEILDDR-R---QWWKVRNASGDSGFVPNNILDIMRT   58 (59)
T ss_dssp             CEEEESSCBCCSSTTBCCBCTTCEEEECGGG-C---CEEEEECTTSCEEEEEGGGEEEECC
T ss_pred             eEEEEccCCCCCCCCeeeEcCCCEEEEEEEc-C---CcEEEEEcCCCEEEECHHHeEECCC
Confidence            4689999999999999999999999999763 2   499998 789999999999998854

>d1ujya_ b.34.2.1 (A:) Rac/CDC42 GEF 6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Rac/CDC42 GEF 6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=1e-16  Score=98.62  Aligned_cols=57  Identities=32%  Similarity=0.564  Sum_probs=51.5

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~~  129 (137)
                      ..++|+|||.++.++||+|++||+|.|+++.+   .+||+++.+|++||||.+||+.+..
T Consensus        11 ~~~rAlydy~a~~~~eLs~~~Gd~i~v~~~~~---~~W~~g~~~g~~G~~P~~yv~~i~~   67 (76)
T d1ujya_          11 LIVKARFNFKQTNEDELSVCKGDIIYVTRVEE---GGWWEGTLNGRTGWFPSNYVREIKS   67 (76)
T ss_dssp             EEEECCSCBCCSSTTSCCBCSSCCEEESSCCS---SSCEEEEETTEEEEECTTTSEECCH
T ss_pred             EEEEECccCCCCCCCCccCCCCCEEEEeEEcC---CCEEEEEECCcEEEEchHHEEECCC
Confidence            35889999999999999999999999998754   3599999999999999999999864

>d1spka_ b.34.2.1 (A:) BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BAI1-associated protein 2-like 1 (RIKEN cDNA 1300006m19)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=1.3e-16  Score=97.17  Aligned_cols=60  Identities=20%  Similarity=0.437  Sum_probs=50.2

Q ss_pred             CCcceEEeeccCCC-CCCCCCCCCCCEEEEEEecCCCCCCeEEEEe--CCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEAN-NTDELSFKTGECIIVLRKGDENEREWWWSKL--NNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~-~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~--~g~~G~~P~~yv~~~~~  129 (137)
                      .+.+++|||+|.+. ..+||+|++||+|.|+.+.+  ..|||.++.  +++.||||.+||+.+..
T Consensus         6 ~~~~~~Alydy~~~~~~deLsf~~Gd~i~vl~~~~--~~gW~~g~~~~~g~~G~fP~nyVe~i~~   68 (72)
T d1spka_           6 SGQKVKTIFPHTAGNNKTLLSFAQGDVLTLLIPEE--KDGWLYGEHDTTKARGWFPSSYTKLLSG   68 (72)
T ss_dssp             CSCEEECSSCBCCSSCSSBCCBCTTCEEEECCSSC--BTTEEEEEETTTCCEEEEEGGGCEECSS
T ss_pred             CCCEEEEeeccCCCCCCCEeeEcCCCEEEEEEeec--CCCeEEEEECCCCCEEEEchhhEEECCC
Confidence            45679999999985 57889999999999986643  346999983  58999999999999965

>d1efna_ b.34.2.1 (A:) Fyn proto-oncogene tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn proto-oncogene tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.8e-16  Score=91.45  Aligned_cols=54  Identities=37%  Similarity=0.768  Sum_probs=48.0

Q ss_pred             ceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeec
Q psy7685          71 AVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        71 ~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~  127 (137)
                      .++|+|||.++.++||+|++||+|.|+++.+   .+||.++  .+|+.|+||.+||+.+
T Consensus         2 l~vAl~dy~a~~~~eLs~~~Gd~i~v~~~~~---~~Ww~~~~~~~g~~G~vP~~yv~pv   57 (57)
T d1efna_           2 LFVALYDYEAITEDDLSFHKGEKFQILNSSE---GDWWEARSLTTGETGYIPSNYVAPV   57 (57)
T ss_dssp             EEEESSCBCCSSTTBCCBCTTCEEEEEECSS---CSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             EEEECCCCCCCCcCCcCCCCCCEEEEEEecC---CCCEEEEECCCCCEEEEeHHHeEEC
Confidence            3689999999999999999999999998754   3599998  6789999999999864

>d1ng2a2 b.34.2.1 (A:215-332) p47pox (neutrophil cytosolic factor 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p47pox (neutrophil cytosolic factor 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.8e-16  Score=104.02  Aligned_cols=58  Identities=28%  Similarity=0.454  Sum_probs=52.4

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeCCeeEEEcCCCeeecC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLNNKEGYVPRNLLGLYP  128 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~g~~G~~P~~yv~~~~  128 (137)
                      .+..++|||+|.+...+||+|++||+|.|+++.++   |||.|+.+|++||||.+||+.+.
T Consensus        13 ~g~~~~alydy~a~~~dELs~~~Gd~i~Vl~~~~~---gWw~g~~~g~~G~~P~~yv~~~~   70 (118)
T d1ng2a2          13 AGEPYVAIKAYTAVEGDEVSLLEGEAVEVIHKLLD---GWWVIRKDDVTGYFPSMYLQKSG   70 (118)
T ss_dssp             TCEEEEESSCBCCCSTTBCCBCTTCEEEEEECCTT---SEEEEEETTEEEEEEGGGEEETT
T ss_pred             CCcEEEECcCCCCCCCCEecCCCCCEEEEeEecCC---CeEEEEECCeEEEEehhhEEECC
Confidence            34578999999999999999999999999987643   59999999999999999999874

>d1fmka1 b.34.2.1 (A:82-145) c-src protein tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: c-src protein tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=2.3e-16  Score=93.95  Aligned_cols=57  Identities=32%  Similarity=0.722  Sum_probs=50.0

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~  129 (137)
                      ..++|+|||.++.++||+|++||+|.|+++.+   .+||.++  .+|+.||||.+||+.+..
T Consensus         3 ~~~vAlydf~~~~~~eLs~~~Gd~i~v~~~~~---~~Ww~~~~~~~g~~G~vP~~yv~~~~s   61 (64)
T d1fmka1           3 TTFVALYDYESRTETDLSFKKGERLQIVNNTE---GDWWLAHSLSTGQTGYIPSNYVAPSDS   61 (64)
T ss_dssp             EEEEESSCBCCCSSSBCCBCTTCEEEESCCCS---SSEEEEEETTTCCEEEEEGGGEEETTS
T ss_pred             eEEEECccCCCcCcCCcCCCCCCEEEEEEEcC---CCcEEEEECCCCCEEEEehHHeEECcc
Confidence            35799999999999999999999999998754   3599998  568999999999998754

>d1awwa_ b.34.2.1 (A:) Bruton's tyrosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Bruton's tyrosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=6.9e-17  Score=97.09  Aligned_cols=59  Identities=31%  Similarity=0.658  Sum_probs=51.8

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~  129 (137)
                      ...+++|+|+|.++.++||+|++||+|.|+.+.+   .+||.++ .+|+.||||++||+.+.+
T Consensus         7 ~~~~v~Alydy~a~~~~eLs~~~Gd~i~v~~~~~---~~Ww~~~~~~g~~G~vP~~yv~~~~~   66 (67)
T d1awwa_           7 ELKKVVALYDYMPMNANDLQLRKGDEYFILEESN---LPWWRARDKNGQEGYIPSNYVTEAED   66 (67)
T ss_dssp             CCCEEEBSSCCCCSSSSSCCCCSSCEEECCCCCS---SSEECCBCTTSCBCCEETTTBCCSCC
T ss_pred             CCEEEEECcCCCCCCcCCcCCCCCCEEEEEEEcC---CCeEEEEECCCCEEEEcHHHeEECcC
Confidence            4457899999999999999999999999997754   3599998 789999999999998754

>d1zuua1 b.34.2.1 (A:2-57) BZZ1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: BZZ1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=3.5e-16  Score=90.74  Aligned_cols=53  Identities=21%  Similarity=0.453  Sum_probs=45.9

Q ss_pred             eEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeee
Q psy7685          72 VYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGL  126 (137)
Q Consensus        72 ~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~  126 (137)
                      ++|||||.++.++||+|++||+|.|++..+.  .+||.++  .+|+.|+||++||++
T Consensus         2 aralydf~a~~~~ELs~~~Gd~i~v~~~~~~--~~w~~~~~~~~g~~G~~P~nyvev   56 (56)
T d1zuua1           2 NKVLYAYVQKDDDEITITPGDKISLVARDTG--SGWTKINNDTTGETGLVPTTYIRI   56 (56)
T ss_dssp             CEECSCBCCCSTTBCCBCTTCCEEEEECCSS--SSEEEEEETTTTEEEEEEGGGEEC
T ss_pred             CEEeeeeCCCCCCEeeECCCCEEEEEEEecC--CCcEEEeCCCCceEEEEehhhEEC
Confidence            6899999999999999999999999987543  3567666  679999999999974

>d1qcfa1 b.34.2.1 (A:80-145) Hemapoetic cell kinase Hck {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Hemapoetic cell kinase Hck
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=5e-16  Score=92.68  Aligned_cols=56  Identities=41%  Similarity=0.800  Sum_probs=48.9

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeecCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLYPR  129 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~~~  129 (137)
                      ..++|+|||.++.++||+|++||+|.|++..    .+||.++  .+|+.|+||++||+.+..
T Consensus         5 ~~vvAlydy~~~~~~eLs~~~Gd~i~v~~~~----~~ww~~~~~~~g~~G~vP~~yv~~~~~   62 (65)
T d1qcfa1           5 IIVVALYDYEAIHHEDLSFQKGDQMVVLEES----GEWWKARSLATRKEGYIPSNYVARVDS   62 (65)
T ss_dssp             CEEEESSCBCCCSTTBCCBCTTCEEEEEECC----TTEEEEEETTTCCEEEEEGGGEEETTC
T ss_pred             EEEEECCcCCCCCcCccCCCCCCEEEEEEEC----CCCEEEEEccCCCEEEEchHHeEECcc
Confidence            4578999999999999999999999999762    2499887  578999999999998854

>d1wfwa_ b.34.2.1 (A:) Kalirin-9a {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Kalirin-9a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=6.7e-16  Score=94.37  Aligned_cols=60  Identities=22%  Similarity=0.367  Sum_probs=52.1

Q ss_pred             CCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe------CCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL------NNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~------~g~~G~~P~~yv~~~~~~  130 (137)
                      .+..++|||||.+..++||+|++||+|.|+++.++   +||.++.      +|++||||.+||+.+...
T Consensus         6 ~g~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~---~Ww~v~~~~~~~~~g~~G~vP~~yve~~~~p   71 (74)
T d1wfwa_           6 SGSTMTVIKDYYALKENEICVSQGEVVQVLAVNQQ---NMCLVYQPASDHSPAAEGWVPGSILAPFSGP   71 (74)
T ss_dssp             CSCEEECCSCBCCCSSSCCCBCTTCEEEEEEECTT---SEEEEEECSCSSSSSEEEEEEGGGCCBCCST
T ss_pred             CCCEEEEeEEECCCCCCCccCccCCEEEEEEEcCC---CCEEEEeCccCCcCCeeeEEchHHeEECCCC
Confidence            45679999999999999999999999999988644   5999982      368999999999988653

>d2iima1 b.34.2.1 (A:58-119) p56-lck tyrosine kinase, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: p56-lck tyrosine kinase, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.9e-16  Score=90.98  Aligned_cols=56  Identities=32%  Similarity=0.723  Sum_probs=48.3

Q ss_pred             cCCcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeee
Q psy7685          67 LNNGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGL  126 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~  126 (137)
                      .....++|+|||.++.++||+|++||+|.|+++.+    +||.++  .+|+.||||++||+.
T Consensus         4 ~~~~~~~al~dy~a~~~~eLs~~~Gd~i~v~~~~~----~ww~~~~~~~g~~G~~P~~yV~~   61 (62)
T d2iima1           4 LQDNLVIALHSYEPSHDGDLGFEKGEQLRILEQSG----EWWKAQSLTTGQEGFIPFNFVAK   61 (62)
T ss_dssp             TTTCEEEESSCBCCCSTTBCCBCTTCEEEEEECCS----SEEEEEETTTCCEEEEEGGGEEE
T ss_pred             CCCcEEEECCCCCcCCcCCcCCCCCCEEEEeEEcC----CCEEEEeccCCeEeEEcHHHEEe
Confidence            34567999999999999999999999999998742    488876  678999999999975

>d1wiea_ b.34.2.1 (A:) RIM binding protein 2, RIMBP2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: RIM binding protein 2, RIMBP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=5.5e-16  Score=99.25  Aligned_cols=61  Identities=23%  Similarity=0.409  Sum_probs=50.2

Q ss_pred             CCcceEEeeccCCCC------CCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCeeecCCC
Q psy7685          68 NNGAVYALYDYEANN------TDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLLGLYPRV  130 (137)
Q Consensus        68 ~~~~~~al~dy~~~~------~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv~~~~~~  130 (137)
                      ....|+|+|||.++.      .+||+|++||+|.|+.+.+  +.+||.++ .+|++||||.|||+.+...
T Consensus        16 ~~~~~~Alydy~~~~~~~~~~e~ELsf~~Gd~i~v~~~~~--~~gW~~~~~~~G~~G~~P~nyve~~~~~   83 (96)
T d1wiea_          16 KVHLCVARYSYNPFDGPNENPEAELPLTAGKYLYVYGDMD--EDGFYEGELLDGQRGLVPSNFVDFVQDN   83 (96)
T ss_dssp             CEEEEEESSCCCGGGSSCSCTTTBCCCCTTCEEEEESSCC--SSSCCEEEETTCCBCBCCTTSEECCCSC
T ss_pred             CceEEEEeeeecCcccCCCCCCcEeeEcCCCEEEEEEeeC--CCceEEEEeCCCCEEEEehHHeEECCCc
Confidence            345799999998754      4789999999999997654  33688887 6899999999999998654

>d1phta_ b.34.2.1 (A:) Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phosphatidylinositol 3-kinase (p85-alpha subunit, pi3k), SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2.4e-16  Score=98.38  Aligned_cols=63  Identities=19%  Similarity=0.346  Sum_probs=52.3

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecC------------CCCCCeEEEE--eCCeeEEEcCCCeeecCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGD------------ENEREWWWSK--LNNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~------------~~~~gWw~g~--~~g~~G~~P~~yv~~~~~~~  131 (137)
                      +.+++|||+|.+..++||+|++||+|.|+.+..            ..+.|||.|+  .+|+.||||++||+.+....
T Consensus         3 G~~~raly~y~~~~~~eLs~~~Gd~i~V~~~~~~~~~~~~~~~~~~~~~GW~~G~~~~~g~~G~FP~nYVe~i~~~~   79 (83)
T d1phta_           3 GYQYRALYDYKKEREEDIDLHLGDILTVNKGSLVALGFSDGQEARPEEIGWLNGYNETTGERGDFPGTYVEYIGRKK   79 (83)
T ss_dssp             EEEEEECSCBCCSSTTBCCBCTTCEEEEEHHHHHTTTCCTTGGGCHHHHCEEEEEETTTTEEEEEEGGGEEEEEEEE
T ss_pred             CCEEEEcCccCCCCCCcccccCCCEEEEEeccccccccccccccccCCCCeEEEEECCCCcEeeEehhhEEEcCCcC
Confidence            457899999999999999999999999997521            1124699998  58999999999999986543

>d1i1ja_ b.34.2.1 (A:) Melanoma inhibitory activity protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Melanoma inhibitory activity protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.1e-15  Score=98.15  Aligned_cols=63  Identities=24%  Similarity=0.442  Sum_probs=52.5

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEeC--------CeeEEEcCCCeeecCCCCC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKLN--------NKEGYVPRNLLGLYPRVQP  132 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~~--------g~~G~~P~~yv~~~~~~~~  132 (137)
                      .+++|+|+|.++..++|+|++||+|.|+++.+.++.+||.|+..        |+.||||++||+++....+
T Consensus        22 ~~~~Alydy~~~~~~eL~f~~Gd~i~Vl~k~~~~~~~WW~g~~~g~~~~~~~g~~G~fP~nyV~~~~~~~~   92 (106)
T d1i1ja_          22 SMAVALQDYMAPDCRFLTIHRGQVVYVFSKLKGRGRLFWGGSVQGDYYGDLAARLGYFPSSIVREDQTLKP   92 (106)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEEEEECGGGTTEEEEEEBCSSTTCBCSCCEEEEGGGEEEEEECSC
T ss_pred             eEEEEccccCCCCCCCccCCCCCEEEEEEecCCCCcceEEEEecCccccccCCcccccccccEEEccccCc
Confidence            46999999999999999999999999998744334579999843        4689999999998865443

>d2hspa_ b.34.2.1 (A:) Phospholipase C, SH3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Phospholipase C, SH3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8.1e-16  Score=93.31  Aligned_cols=60  Identities=30%  Similarity=0.532  Sum_probs=50.4

Q ss_pred             CcceEEeeccCCCCCCCCCCCCCCEEEEEEecCCCCCCeEEEEe-CCeeEEEcCCCeeecCCCC
Q psy7685          69 NGAVYALYDYEANNTDELSFKTGECIIVLRKGDENEREWWWSKL-NNKEGYVPRNLLGLYPRVQ  131 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~-~g~~G~~P~~yv~~~~~~~  131 (137)
                      ..+++|||+|.+..++||+|++||+|.|+++.++   |||.|+. .++.|+||++||+.+....
T Consensus         6 ~~~v~Aly~f~a~~~~eLsf~~Gd~i~v~~~~~~---~Ww~g~~~~~~~G~fP~~yv~~~~~~~   66 (71)
T d2hspa_           6 KCAVKALFDYKAQREDELTFIKSAIIQNVEKQEG---GWWRGDYGGKKQLWFPSNYVEEMVNPE   66 (71)
T ss_dssp             SSCEECCSCCCCSSSSSCCCCTTCEEBSCCCBTT---TEECCBCSSCCSCCEETTTCCSCSCCC
T ss_pred             cEEEEEcccCCcCCcCCccCCCCCEEEEEEecCC---CEEEEEECCeEEEEEchHHeEEcCCcc
Confidence            3468999999999999999999999999987643   5999994 4555699999999886543

>d1gcqc_ b.34.2.1 (C:) Vav N-terminal SH3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Vav N-terminal SH3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.55  E-value=5.2e-15  Score=89.15  Aligned_cols=56  Identities=20%  Similarity=0.429  Sum_probs=45.7

Q ss_pred             cceEEeeccCC------CCCCCCCCCCCCEEEEEEecCCCCCCeEEEE--eCCeeEEEcCCCeeec
Q psy7685          70 GAVYALYDYEA------NNTDELSFKTGECIIVLRKGDENEREWWWSK--LNNKEGYVPRNLLGLY  127 (137)
Q Consensus        70 ~~~~al~dy~~------~~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~--~~g~~G~~P~~yv~~~  127 (137)
                      .+++|+++|.+      +..+||+|++||+|.|++...  +.|||.|+  .+|+.||||+|||+++
T Consensus         5 Pk~~a~~~y~~~~~~~~~~~~eLsf~~GD~i~Vl~~~~--~~gWw~G~~~~~g~~G~fP~nyVePy   68 (69)
T d1gcqc_           5 PKMEVFQEYYGIPPPPGAFGPFLRLNPGDIVELTKAEA--EHNWWEGRNTATNEVGWFPCNRVHPY   68 (69)
T ss_dssp             CEEEECSCBSSSSCCGGGCSCBCCBCTTCEEEEEECCT--TCSEEEEEETTTTEEEEEEGGGEEEC
T ss_pred             CcEEEeeeEeccCCCCCCCCCEeeEcCCCEEEEEEEec--CCCEEEEEECCCCCEEEEeHHHEEEc
Confidence            35677777754      678899999999999997643  34799999  3799999999999875

>d1bb9a_ b.34.2.1 (A:) Amphiphysin 2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Amphiphysin 2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.54  E-value=1.9e-15  Score=94.24  Aligned_cols=59  Identities=27%  Similarity=0.431  Sum_probs=49.5

Q ss_pred             cceEEeeccCCCCCCCCCCCCCCEEEEEEecCC--CCCCeEEEEe----------CCeeEEEcCCCeeecC
Q psy7685          70 GAVYALYDYEANNTDELSFKTGECIIVLRKGDE--NEREWWWSKL----------NNKEGYVPRNLLGLYP  128 (137)
Q Consensus        70 ~~~~al~dy~~~~~~eLs~~~Gd~i~vl~~~~~--~~~gWw~g~~----------~g~~G~~P~~yv~~~~  128 (137)
                      .+++|+|+|.++.++||+|++||+|.|+.+.+.  .+.|||.|..          +|+.|+||+|||+.+.
T Consensus        13 ~~~~Alydy~a~~~~ELs~~~Gd~i~Vl~~~~~~~~~dgWw~G~~~~~~~~~~~~~g~~G~fP~nyVe~ie   83 (83)
T d1bb9a_          13 FKVQAQHDYTATDTDELQLKAGDVVLVIPFQNPEEQDEGWLMGVKESDWNQHKELEKCRGVFPENFTERVQ   83 (83)
T ss_dssp             EEEEESSCBCCSSTTBCCBCTTCEEEEECCSCGGGCCTTEEEEEEHHHHHTTCCHHHHCEEEEGGGEEEEC
T ss_pred             EEEEEceeECCCCCCEecCcCCCEEEEEEccCCCcccCCEeEEEecCCccccccCCCCEEEEchhHeEEcC
Confidence            468999999999999999999999999987532  2357999972          4679999999999873

>d1kjwa1 b.34.2.1 (A:430-525) Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Psd-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.47  E-value=2.4e-15  Score=96.13  Aligned_cols=54  Identities=31%  Similarity=0.711  Sum_probs=45.7

Q ss_pred             ceEEeeccCCCC-----CCCCCCCCCCEEEEEEecCCCCCCeEEEEe------CCeeEEEcCCCeeec
Q psy7685          71 AVYALYDYEANN-----TDELSFKTGECIIVLRKGDENEREWWWSKL------NNKEGYVPRNLLGLY  127 (137)
Q Consensus        71 ~~~al~dy~~~~-----~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~~------~g~~G~~P~~yv~~~  127 (137)
                      +++|+|||.++.     ..+|+|++||+|.|+.+.++   +||.|+.      +|+.||||+|||++.
T Consensus         3 ~vrAlydy~~~~d~~~~~~eLsf~kGdil~V~~~~d~---~WW~~~~~~~~~~~g~~G~~Psnyv~e~   67 (96)
T d1kjwa1           3 YIRALFDYDKTKDCGFLSQALSFRFGDVLHVIDAGDE---EWWQARRVHSDSETDDIGFIPSKRRVER   67 (96)
T ss_dssp             EEEESSCBCHHHHHCCCSSBCCBCTTCEEEEEECCSS---SEEEEEECCSSCCCSCCEEEECHHHHHH
T ss_pred             EEEEcccCcCCcCCCCCCccceEcCCCEEEEeeeccC---ceEEEEEccCCCCCCCEeEEeccceeee
Confidence            578999999875     34899999999999998654   5999983      578999999999753

>d1t0ha_ b.34.2.1 (A:) SH3-like domain of the L-type calcium channel {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.45  E-value=4.6e-14  Score=89.86  Aligned_cols=55  Identities=25%  Similarity=0.488  Sum_probs=47.3

Q ss_pred             cCCcceEEeeccCCCCCCC-------CCCCCCCEEEEEEecCCCCCCeEEEEe---CCeeEEEcCCCe
Q psy7685          67 LNNGAVYALYDYEANNTDE-------LSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLL  124 (137)
Q Consensus        67 ~~~~~~~al~dy~~~~~~e-------Ls~~~Gd~i~vl~~~~~~~~gWw~g~~---~g~~G~~P~~yv  124 (137)
                      ....+++|+|||++..+++       |+|++||+|.|+.+.+++   ||.|+.   +|+.||||++++
T Consensus        19 p~~~~vrAlydY~~~~dd~~P~~~~~LsF~~GDii~v~~~~d~~---WW~gr~~~~~g~~G~~PS~~~   83 (96)
T d1t0ha_          19 PVAFAVRTNVRYSAAQEDDVPVPGMAISFEAKDFLHVKEKFNND---WWIGRLVKEGCEIGFIPSPVK   83 (96)
T ss_dssp             CCCEEEEESSCBCCCGGGCCSSTTCBCCBCTTCEEEEEEECSSS---EEEEEESSTTCCCEEEECHHH
T ss_pred             CccEEEEEeeccCCCCCCCCccccccccCCCCCEEEEeeeeCCC---ceEEEEcCCCCCEEEecCcHH
Confidence            3456789999999998888       999999999999997554   999995   578999999864

>d1vyva1 b.34.2.1 (A:71-215) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.27  E-value=1.5e-12  Score=88.75  Aligned_cols=52  Identities=23%  Similarity=0.498  Sum_probs=45.8

Q ss_pred             ceEEeeccCCCCCCC-------CCCCCCCEEEEEEecCCCCCCeEEEEe---CCeeEEEcCCCee
Q psy7685          71 AVYALYDYEANNTDE-------LSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLLG  125 (137)
Q Consensus        71 ~~~al~dy~~~~~~e-------Ls~~~Gd~i~vl~~~~~~~~gWw~g~~---~g~~G~~P~~yv~  125 (137)
                      .++|+|||.+...++       |+|++||+|.|+.+.++   +||.|+.   +|+.||||++|+.
T Consensus        25 ~vra~~dy~~~~d~~~p~~~~~LsF~kGDii~V~~~~d~---~WW~gr~~~~~g~~G~iPS~~~~   86 (145)
T d1vyva1          25 AVKTNVSYCGALDEDVPVPSSAVSFDAKDFLHIKEKYNN---DWWIGRLVKEGCEIGFIPSPLRL   86 (145)
T ss_dssp             EEEESSCBCTTSCCSCSSTTCBCCBCTTCEEEEEEEEET---TEEEEEESSTTCCCEEEECHHHH
T ss_pred             EEEEeeeeCCccCCcCCcccccccCcCCCEEEEeeccCC---CcEEEEEcCCCCceeEeCCchhh
Confidence            589999999999887       99999999999999755   4999994   6899999997643

>d1vyua1 b.34.2.1 (A:39-174) SH3-like domain of the L-type calcium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: SH3-like domain of the L-type calcium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=7.9e-11  Score=79.18  Aligned_cols=53  Identities=19%  Similarity=0.396  Sum_probs=44.5

Q ss_pred             CcceEEeeccCCCCCCC-------CCCCCCCEEEEEEecCCCCCCeEEEEe---CCeeEEEcCCCe
Q psy7685          69 NGAVYALYDYEANNTDE-------LSFKTGECIIVLRKGDENEREWWWSKL---NNKEGYVPRNLL  124 (137)
Q Consensus        69 ~~~~~al~dy~~~~~~e-------Ls~~~Gd~i~vl~~~~~~~~gWw~g~~---~g~~G~~P~~yv  124 (137)
                      .-.++|+|+|.+..+++       |+|++||+|.|+.+.+.+   ||.|+.   .|..||||+.|+
T Consensus        23 ~~~vra~~~Y~~~~d~~~P~~~~~LsF~~gdil~v~~~~d~~---WW~~r~~~~~~~~G~iPs~~~   85 (136)
T d1vyua1          23 AFAVRTNVSYCGVLDEECPVQGSGVNFEAKDFLHIKEKYSND---WWIGRLVKEGGDIAFIPSPQR   85 (136)
T ss_dssp             CEEEEESSCEEGGGCTTCSSTTCBCEECTTCEEEEEEECSSS---EEEEEESSTTCCCEEEECHHH
T ss_pred             eEEEEEeeccCCCCCCCCcccCcccCCCCCCEEEEEeccCCC---cEEEEeccCCCceeccCchHH
Confidence            34588999999988777       889999999999997554   999993   467899999874

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00017  Score=46.23  Aligned_cols=58  Identities=47%  Similarity=0.720  Sum_probs=49.0

Q ss_pred             hhhhhcCCCchhhhhh-cccceecccccCChhhhhhhhccccCCcccccchhhhhHhhh
Q psy7685           7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVKCEEDEEGFEGCSEFLYSVQEKL   64 (137)
Q Consensus         7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   64 (137)
                      .|.|+.+|++++++.| ++|+++.+.+..+..++...+.....++..+-+++.....+.
T Consensus        71 Lh~A~~~g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~~~l  129 (130)
T d1ycsb1          71 LHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKM  129 (130)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHT
T ss_pred             ccccchhhHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHHHhC
Confidence            6999999999999999 999999999888888888888777777777777777665543

>d1ri9a_ b.34.2.1 (A:) Fyn-binding protein (T-cell adapter protein adap) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: SH3-domain
family: SH3-domain
domain: Fyn-binding protein (T-cell adapter protein adap)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.10  E-value=0.0032  Score=37.06  Aligned_cols=40  Identities=33%  Similarity=0.454  Sum_probs=34.3

Q ss_pred             CCCCCCCCCCCEEEEEEecCCCCCCeEEEE-eCCeeEEEcCCCe
Q psy7685          82 NTDELSFKTGECIIVLRKGDENEREWWWSK-LNNKEGYVPRNLL  124 (137)
Q Consensus        82 ~~~eLs~~~Gd~i~vl~~~~~~~~gWw~g~-~~g~~G~~P~~yv  124 (137)
                      +..+|+++.|+.|.||+..+   .|-|.|| ..|+-|+|+.+++
T Consensus        35 g~~dL~vk~GE~ldVIr~t~---~~k~LcRN~~GkYGYV~~~~l   75 (77)
T d1ri9a_          35 GTRDLQVKPGESLEVIQTTD---DTKVLCRNEEGKYGYVLRSYL   75 (77)
T ss_dssp             CTTBCCCCTTCBCEEEEESS---SSEEEEEETTTEEEEEEGGGS
T ss_pred             CcccCCcCCCCEEEEEEeCC---CCeEEEEcCCCcEEEEEeeee
Confidence            45689999999999999864   4589999 8899999998775

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.54  E-value=0.055  Score=33.45  Aligned_cols=32  Identities=6%  Similarity=-0.204  Sum_probs=27.1

Q ss_pred             CccchhhhhhcCCCchhhhhh-cccceeccccc
Q psy7685           2 PKSHIQKIHFTCTTLAVCSLS-FVLYCIFATTH   33 (137)
Q Consensus         2 ~~~~~~~~~a~~~~~~~~~~l-~~g~~~~~~~~   33 (137)
                      |.+-+.|.||..|++++++.| +.|+++.....
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~gad~n~~~~   34 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAGANPNAPNS   34 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTTCCTTCCCS
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcCCccccccc
Confidence            556678999999999999999 99998866543

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.12  E-value=0.13  Score=32.04  Aligned_cols=35  Identities=11%  Similarity=-0.239  Sum_probs=27.3

Q ss_pred             hhhhhcCCCchhhhhh-cccceecccccCChhhhhhh
Q psy7685           7 QKIHFTCTTLAVCSLS-FVLYCIFATTHSDHETAAVK   42 (137)
Q Consensus         7 ~~~~a~~~~~~~~~~l-~~g~~~~~~~~~d~~~~~~~   42 (137)
                      -|.||..|++++++.| ++|+++..... +..|+...
T Consensus         5 Lh~Aa~~g~~~~v~~Ll~~g~d~n~~d~-~g~TpL~~   40 (156)
T d1ihba_           5 LASAAARGDLEQLTSLLQNNVNVNAQNG-FGRTALQV   40 (156)
T ss_dssp             HHHHHHHTCHHHHHHHTTSCCCTTCCCT-TSCCHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCcCccCC-cccccccc
Confidence            3899999999999999 99999876543 34555544

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=81.73  E-value=0.31  Score=29.43  Aligned_cols=25  Identities=4%  Similarity=-0.343  Sum_probs=19.2

Q ss_pred             hhhhhcCCCchhhhhh-cccceeccc
Q psy7685           7 QKIHFTCTTLAVCSLS-FVLYCIFAT   31 (137)
Q Consensus         7 ~~~~a~~~~~~~~~~l-~~g~~~~~~   31 (137)
                      -|.|+..++.++++.| +.|+++...
T Consensus        72 Lh~A~~~~~~~~v~~Ll~~Gad~~~~   97 (118)
T d1myoa_          72 LLSAVYEGHVSCVKLLLSKGADKTVK   97 (118)
T ss_dssp             HHHHHTTTCCHHHHHHHTTCCCSSSS
T ss_pred             hhhhhhcCchhhhhhhhcccccceee
Confidence            4778888888888888 888877544