Psyllid ID: psy7774

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHHcccEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEcccccccEEEEccccccEEEEEEcccccccccccccccEEEEEcccccccccHHHHHHHHHccccEEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccEEEEEEcccccEEEEEEEcccHHHHHccccccEEEEEEccEEcccccHHHHHHHHHHcccEEEEEEEEccc
Coil and Loop (DISEMBL)
MRSATYQLAASVLRQCGNSitmlvqyspdkyhelegsgsssaenesvsgrgsgsptpcnspgtnrkssiqhntstltrthvckdersgeprfLMIETRKCSNLGISLVGGNAVGIYVHSVqsgslgysaglrtGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN
Flexible Loop (DISEMBL)
MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSaenesvsgrgsgsptpcnspgtnrkssiqhntstltrthvckdersgEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYelakpadkvtvlahsdtn
Low Complexity Region (SEG)
MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELegsgsssaenesvsgRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRaataeeaayelaKPADKVTVLAHSDTN
Disordered region (IsUnstruct)
******QLAASVLRQCGNSITMLVQY****************************************************************RFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYE*****************
Disordered Region (DISOPRED)
*RSATYQLAASVLRQCGNSITMLVQYSP****************************************************************LMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD**
Disordered Region (DISEMBL)
MRSATYQLAASVLRQCGNSITMLVQYSPDKY*************************************IQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN
Disordered Region (DISPRO)
*RSATYQLAASVLRQCGNSITMLVQYSPD********************************************************RSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q8TDM6	1919	Disks large homolog 5 OS=	yes	N/A	0.878	0.079	0.306	6e-12
Q9UDY2	1190	Tight junction protein ZO	no	N/A	0.843	0.122	0.325	4e-11
Q9Z0U1	1167	Tight junction protein ZO	no	N/A	0.843	0.125	0.319	6e-10
Q95168	1174	Tight junction protein ZO	no	N/A	0.468	0.068	0.397	5e-09
Q5PYH6	873	Disks large homolog 1 OS=	no	N/A	0.549	0.108	0.367	4e-08
O62683	898	Tight junction protein ZO	no	N/A	0.699	0.134	0.279	5e-08
Q62936	849	Disks large homolog 3 OS=	no	N/A	0.612	0.124	0.333	7e-08
Q92796	817	Disks large homolog 3 OS=	no	N/A	0.612	0.129	0.333	7e-08
P70175	849	Disks large homolog 3 OS=	no	N/A	0.612	0.124	0.333	7e-08
Q9QXY1	905	Tight junction protein ZO	no	N/A	0.514	0.098	0.351	9e-08

>sp|Q8TDM6|DLG5_HUMAN Disks large homolog 5 OS=Homo sapiens GN=DLG5 PE=1 SV=4

 Score = 70.5 bits (171), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 37/189 (19%)

Query: 1    MRSATYQLAASVLRQCGNSITMLVQYSPDKYH------------------ELEGSGSSSA 42
            +RSAT Q A  ++ Q  ++IT+L QY+P  +                    L+GSG+++ 
Sbjct: 1402 LRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSSSHLDPAGTHSTLQGSGTTTP 1461

Query: 43   ENESVSG----RGSGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETR 98
            E+ SV      +  G  TP   P     S I  +           ++++ EPR + I+  
Sbjct: 1462 EHPSVIDPLMEQDEGPSTP---PAKQSSSRIAGDA----------NKKTLEPRVVFIKKS 1508

Query: 99   KCSNLGISLVGGNAVGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRAATAEEAAYEL 157
            +   LG+ L GGN  G++V  V+  S      GL  GD ILEY   D+R  T EE   E+
Sbjct: 1509 QL-ELGVHLCGGNLHGVFVAEVEDDSPAKGPDGLVPGDLILEYGSLDVRNKTVEEVYVEM 1567

Query: 158  AKPADKVTV 166
             KP D V +
Sbjct: 1568 LKPRDGVRL 1576

May play a role at the plasma membrane in the maintenance of the structure of epithelial cells and in the transmission of extracellular signals to the membrane and cytoskeleton.
Homo sapiens (taxid: 9606)

>sp|Q9UDY2|ZO2_HUMAN Tight junction protein ZO-2 OS=Homo sapiens GN=TJP2 PE=1 SV=2

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 55/169 (32%), Positives = 78/169 (46%), Gaps = 23/169 (13%)

Query: 25  QYSPDKYH----ELEGSGSSSAENESVSGRGSGSPTPCNS---------PGTNRKSSIQH 71
           QYS   YH    +L+   SS  +  S   R   +PTP  S         P TN++   Q 
Sbjct: 422 QYSDYDYHSSSEKLKERPSSREDTPSRLSRMGATPTPFKSTGDIAGTVVPETNKEPRYQE 481

Query: 72  NTSTLT-----RTHV---CKDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSG 123
           +          RT +    +DE    P   M+  +K  ++G+ L GGN VGI+V  +Q G
Sbjct: 482 DPPAPQPKAAPRTFLRPSPEDEAIYGPNTKMVRFKKGDSVGLRLAGGNDVGIFVAGIQEG 541

Query: 124 SLGYSAGLRTGDRILEYNGTDLRAATAEEAA-YELAKPA-DKVTVLAHS 170
           +     GL+ GD+IL+ N  D R    E+A  Y L  P  + VT+LA S
Sbjct: 542 TSAEQEGLQEGDQILKVNTQDFRGLVREDAVLYLLEIPKGEMVTILAQS 590

Plays a role in tight junctions and adherens junctions.

Homo sapiens (taxid: 9606)

>sp|Q9Z0U1|ZO2_MOUSE Tight junction protein ZO-2 OS=Mus musculus GN=Tjp2 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 54/169 (31%), Positives = 75/169 (44%), Gaps = 23/169 (13%)

Query: 25  QYSPDKYH----ELEGSGSSSAENESVSGRGSGSPTPCNSPG---------TNRKSSIQH 71
           QYS   YH    +L+   SS  E      R   +PTP  S G          +R+   Q 
Sbjct: 402 QYSDQDYHSSTEKLKERPSSREETSGRLSRMGATPTPFKSTGDITAAGVTEASREPRYQE 461

Query: 72  -----NTSTLTRTHV---CKDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSG 123
                   T  R  +    +DE    P   M+  +K  ++G+ L GGN VGI+V  +Q G
Sbjct: 462 EGPVPQPRTAPRVFLRPSPEDEAIYGPNTKMVRFKKGDSVGLRLAGGNDVGIFVAGIQEG 521

Query: 124 SLGYSAGLRTGDRILEYNGTDLRAATAEEAA-YELAKPA-DKVTVLAHS 170
           +     GL+ GD+IL+ N  D R    E+A  Y L  P  + VT+LA S
Sbjct: 522 TSAEQEGLQEGDQILKVNTQDFRGLVREDAVLYLLEIPKGETVTILAQS 570

Plays a role in tight junctions and adherens junctions.

Mus musculus (taxid: 10090)

>sp|Q95168|ZO2_CANFA Tight junction protein ZO-2 OS=Canis familiaris GN=TJP2 PE=1 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/83 (39%), Positives = 47/83 (56%), Gaps = 2/83 (2%)

Query: 90  PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAAT 149
           P   M+  +K  ++G+ L GGN VGI+V  +Q G+     GL+ GD+IL+ N  D R   
Sbjct: 492 PNTKMVRFKKGDSVGLRLAGGNDVGIFVAGIQEGTSAEQEGLQEGDQILKVNTQDFRGLV 551

Query: 150 AEEAA-YELAKP-ADKVTVLAHS 170
            E+A  Y L  P  + VT+LA S
Sbjct: 552 REDAVLYLLEIPKGEMVTILAQS 574

Plays a role in tight junctions and adherens junctions.

Canis familiaris (taxid: 9615)

>sp|Q5PYH6|DLG1_DANRE Disks large homolog 1 OS=Danio rerio GN=dlg1 PE=2 SV=2

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 36/98 (36%), Positives = 57/98 (58%), Gaps = 3/98 (3%)

Query: 74  STLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-L 131
           S +++  +  DE + EPR +++  R  + LG ++VGG +  GI++  + +G      G L
Sbjct: 456 SPVSKGMLGDDEITREPRKIVLH-RGTTGLGFNIVGGEDGEGIFISFILAGGPADLCGEL 514

Query: 132 RTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAH 169
           R GDRI+  NG DLR+AT E+AA  L      VT++A 
Sbjct: 515 RKGDRIVSVNGVDLRSATHEQAAAALKNAGQTVTIIAQ 552

Essential multidomain scaffolding protein required for normal development. Recruits channels, receptors and signaling molecules to discrete plasma membrane domains in polarized cells. May play a role in adherens junction assembly, signal transduction and cell proliferation (By similarity). May play a role in synapse assembly and function.

Danio rerio (taxid: 7955)

>sp|O62683|ZO3_CANFA Tight junction protein ZO-3 OS=Canis familiaris GN=TJP3 PE=1 SV=1

 Score = 57.4 bits (137), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 15/136 (11%)

Query: 53  GSPTPCNSPGTNRKSSI-----------QHNTSTLTRTHVCK--DERSGEPRFLMIETRK 99
           G+ +P +SP   R++S+           +H++  + R    +  ++R   P   ++   K
Sbjct: 318 GTDSPRDSPPLRRENSLDSRTISEPDAPRHSSYDIYRVPSSQSAEDRGYSPDSRVVRFHK 377

Query: 100 CSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA- 158
            + +G+ L GGN VGI+V  VQ GS     G++ GD+IL+ N    R  T EEA   L  
Sbjct: 378 GTTIGLRLAGGNDVGIFVSGVQEGSPADGQGIQEGDQILQVNDVPFRNLTREEAVQFLVA 437

Query: 159 -KPADKVTVLAHSDTN 173
             P ++V ++   + +
Sbjct: 438 LPPGEEVELVTQRNED 453

Canis familiaris (taxid: 9615)

>sp|Q62936|DLG3_RAT Disks large homolog 3 OS=Rattus norvegicus GN=Dlg3 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 11/117 (9%)

Query: 55  PTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-NAV 113
           P P   P T          S + R  + +++ + EPR +++  +  + LG ++VGG +  
Sbjct: 375 PAPPQVPPTR--------YSPIPRHMLAEEDFTREPRKIILH-KGSTGLGFNIVGGEDGE 425

Query: 114 GIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAH 169
           GI+V  + +G     +G LR GDRIL  NG +LR AT E+AA  L +    VT++A 
Sbjct: 426 GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQ 482

Required for learning most likely through its role in synaptic plasticity following NMDA receptor signaling.

Rattus norvegicus (taxid: 10116)

>sp|Q92796|DLG3_HUMAN Disks large homolog 3 OS=Homo sapiens GN=DLG3 PE=1 SV=2

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 11/117 (9%)

Query: 55  PTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-NAV 113
           P P   P T          S + R  + +++ + EPR +++  +  + LG ++VGG +  
Sbjct: 357 PAPPQVPPTR--------YSPIPRHMLAEEDFTREPRKIILH-KGSTGLGFNIVGGEDGE 407

Query: 114 GIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAH 169
           GI+V  + +G     +G LR GDRIL  NG +LR AT E+AA  L +    VT++A 
Sbjct: 408 GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQ 464

Required for learning most likely through its role in synaptic plasticity following NMDA receptor signaling.

Homo sapiens (taxid: 9606)

>sp|P70175|DLG3_MOUSE Disks large homolog 3 OS=Mus musculus GN=Dlg3 PE=1 SV=1

 Score = 56.6 bits (135), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 62/117 (52%), Gaps = 11/117 (9%)

Query: 55  PTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-NAV 113
           P P   P T          S + R  + +++ + EPR +++  +  + LG ++VGG +  
Sbjct: 375 PAPPQVPPTR--------YSPIPRHMLAEEDFTREPRKIILH-KGSTGLGFNIVGGEDGE 425

Query: 114 GIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAH 169
           GI+V  + +G     +G LR GDRIL  NG +LR AT E+AA  L +    VT++A 
Sbjct: 426 GIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSVTIVAQ 482

Required for learning most likely through its role in synaptic plasticity following NMDA receptor signaling.

Mus musculus (taxid: 10090)

>sp|Q9QXY1|ZO3_MOUSE Tight junction protein ZO-3 OS=Mus musculus GN=Tjp3 PE=1 SV=1

 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 2/91 (2%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
           ++R   P   ++   K +++G+ L GGN VGI+V  VQ+GS     G++ GD IL+ NG 
Sbjct: 361 EDRGYSPDTRVVSFPKGASIGLRLAGGNDVGIFVSGVQAGSPADGQGIQEGDEILQVNGM 420

Query: 144 DLRAATAEEAAYEL--AKPADKVTVLAHSDT 172
             R  T EEA   L    P + + ++  S T
Sbjct: 421 PFRNLTREEAVQFLLGLPPGEDMELVTQSKT 451

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
328718447	1666	PREDICTED: disks large homolog 5-like [A	0.936	0.097	0.691	5e-52
189240193	1757	PREDICTED: similar to AGAP007865-PA [Tri	0.959	0.094	0.643	7e-52
270012301	1645	hypothetical protein TcasGA2_TC006425 [T	0.959	0.100	0.643	8e-52
242009028	1793	discs large protein, putative [Pediculus	0.953	0.092	0.579	2e-49
357610048	2007	putative discs large protein [Danaus ple	0.953	0.082	0.620	3e-46
328716348	1525	PREDICTED: disks large homolog 5-like [A	0.936	0.106	0.606	2e-43
321470311	2026	hypothetical protein DAPPUDRAFT_242543 [	0.982	0.083	0.411	2e-39
170059255	870	Dlg5 protein [Culex quinquefasciatus] gi	0.924	0.183	0.481	2e-35
241311069	1558	discs large protein, putative [Ixodes sc	0.936	0.103	0.510	9e-35
158297389	1707	AGAP007865-PA [Anopheles gambiae str. PE	0.924	0.093	0.448	5e-34

>gi|328718447|ref|XP_001945500.2| PREDICTED: disks large homolog 5-like [Acyrthosiphon pisum]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 123/178 (69%), Positives = 139/178 (78%), Gaps = 16/178 (8%)

Query: 1    MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNS 60
            MRSATYQLAA+VLRQCGNSITMLVQYSPDKY ELEG+ SS++         S +PTPCNS
Sbjct: 1151 MRSATYQLAANVLRQCGNSITMLVQYSPDKYQELEGAESSTSS-------RSETPTPCNS 1203

Query: 61   PGTNRKSS----IQHNTSTLTRTHVCKDE-----RSGEPRFLMIETRKCSNLGISLVGGN 111
            P  NRKS+    I H  +TLTR    ++      R+ EPR+ ++ETRKCSNLGISLVGGN
Sbjct: 1204 PTVNRKSTGASVIAHGMATLTRRKSDRNTDSRSLRAYEPRYFIMETRKCSNLGISLVGGN 1263

Query: 112  AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAH 169
            AVGI+VHSV   SL Y+AGLRTGDRILEYNGTDLR ATAEEAAYELAKPA+KVTVLA 
Sbjct: 1264 AVGIFVHSVNLNSLAYNAGLRTGDRILEYNGTDLREATAEEAAYELAKPAEKVTVLAQ 1321

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240193|ref|XP_975297.2| PREDICTED: similar to AGAP007865-PA [Tribolium castaneum]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 119/185 (64%), Positives = 133/185 (71%), Gaps = 19/185 (10%)

Query: 1    MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNS 60
            MR+ATY LAA+VLRQCGNSITMLVQYSPDKY+ELEGSGS S  + +    G G  TPCNS
Sbjct: 1054 MRNATYNLAANVLRQCGNSITMLVQYSPDKYNELEGSGSCSGSSSN-DDEGDGETTPCNS 1112

Query: 61   PGTNRKS---------------SIQHNTSTLTR-THVCKDERSGEPRFLMIETRKCSNLG 104
            P   RKS                +   TS+L R  +  +D+   EPRFL IET K SNLG
Sbjct: 1113 PKEIRKSHPVGITKLPPPTSLLRVGQQTSSLQRQNNSSRDD--DEPRFLYIETLKTSNLG 1170

Query: 105  ISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKV 164
            ISLVGGNA GI++HSVQ  SL Y AGLRTGD+ILEYNG+DLR ATAEEAAYELAKPADKV
Sbjct: 1171 ISLVGGNAAGIFIHSVQPDSLAYHAGLRTGDQILEYNGSDLRNATAEEAAYELAKPADKV 1230

Query: 165  TVLAH 169
            TV AH
Sbjct: 1231 TVSAH 1235

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012301|gb|EFA08749.1| hypothetical protein TcasGA2_TC006425 [Tribolium castaneum]

 Score =  208 bits (529), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 119/185 (64%), Positives = 133/185 (71%), Gaps = 19/185 (10%)

Query: 1    MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNS 60
            MR+ATY LAA+VLRQCGNSITMLVQYSPDKY+ELEGSGS S  + +    G G  TPCNS
Sbjct: 1121 MRNATYNLAANVLRQCGNSITMLVQYSPDKYNELEGSGSCSGSSSN-DDEGDGETTPCNS 1179

Query: 61   PGTNRKS---------------SIQHNTSTLTR-THVCKDERSGEPRFLMIETRKCSNLG 104
            P   RKS                +   TS+L R  +  +D+   EPRFL IET K SNLG
Sbjct: 1180 PKEIRKSHPVGITKLPPPTSLLRVGQQTSSLQRQNNSSRDD--DEPRFLYIETLKTSNLG 1237

Query: 105  ISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKV 164
            ISLVGGNA GI++HSVQ  SL Y AGLRTGD+ILEYNG+DLR ATAEEAAYELAKPADKV
Sbjct: 1238 ISLVGGNAAGIFIHSVQPDSLAYHAGLRTGDQILEYNGSDLRNATAEEAAYELAKPADKV 1297

Query: 165  TVLAH 169
            TV AH
Sbjct: 1298 TVSAH 1302

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242009028|ref|XP_002425295.1| discs large protein, putative [Pediculus humanus corporis] gi|212509060|gb|EEB12557.1| discs large protein, putative [Pediculus humanus corporis]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 113/195 (57%), Positives = 137/195 (70%), Gaps = 30/195 (15%)

Query: 1    MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNS 60
            +R AT+ LAASVL+QCGNSITMLV+Y+PDKYHE E S S+S ++ES S   S S TPCNS
Sbjct: 1259 LRKATFNLAASVLQQCGNSITMLVEYNPDKYHEAEASPSTS-DDESHSK--SDSTTPCNS 1315

Query: 61   PGTNRKSSIQHNT---------STLTRTHV---------------CKDERSGE---PRFL 93
            P ++RKS+ + +          STLTR  +               C ++ +     PR++
Sbjct: 1316 PKSSRKSTGEPSNGNMRGTFAQSTLTRNQISPVISTLTRQNAAIRCSNDGTKSLHGPRYV 1375

Query: 94   MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
             IET+KCSNLGISLVGGNAVGI+VHSV   S  Y+AGLRTGD+ILE  GTDLR ATAEEA
Sbjct: 1376 CIETKKCSNLGISLVGGNAVGIFVHSVLVDSSAYNAGLRTGDQILECRGTDLRQATAEEA 1435

Query: 154  AYELAKPADKVTVLA 168
            AYELAKPADKVT+LA
Sbjct: 1436 AYELAKPADKVTILA 1450

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357610048|gb|EHJ66805.1| putative discs large protein [Danaus plexippus]

 Score =  189 bits (480), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 111/179 (62%), Positives = 126/179 (70%), Gaps = 14/179 (7%)

Query: 1    MRSATYQLAASVLRQCGNSITMLVQYSPDKYH-ELE----GSGSSSAENESVSGRGSGSP 55
            MRSATY LAASVLRQ GNSITMLVQ+SP+KY  E+E     S   S+ +E VS   SGSP
Sbjct: 1275 MRSATYTLAASVLRQIGNSITMLVQFSPEKYKDEMEVPGSSSSGESSHDEEVSL--SGSP 1332

Query: 56   TPCNSPGTN---RKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGNA 112
            TP NSPG     R      + +TL ++   KD     PRFL+IE R CS+LGISLVGGNA
Sbjct: 1333 TPRNSPGPQQSLRMDVPSTDAATLRQSQGNKDL----PRFLLIEMRNCSDLGISLVGGNA 1388

Query: 113  VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD 171
            VGI+VHSVQ  S  Y AGLRTGD+ILEYN  DLR ATAE+AA ELAKPADKV+VL   D
Sbjct: 1389 VGIFVHSVQMDSPAYIAGLRTGDQILEYNNVDLRRATAEQAALELAKPADKVSVLVRHD 1447

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328716348|ref|XP_003245905.1| PREDICTED: disks large homolog 5-like [Acyrthosiphon pisum]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 108/178 (60%), Positives = 131/178 (73%), Gaps = 16/178 (8%)

Query: 1    MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNS 60
            +R A+Y+LAA+VLRQCG+++TMLVQYSPDK  EL  + SS++         S + TP NS
Sbjct: 1106 LRCASYRLAANVLRQCGDTVTMLVQYSPDKSKELNCTKSSTSN-------CSETLTPRNS 1158

Query: 61   PGTNRKSS----IQHNTSTLTRTHVCKDE-----RSGEPRFLMIETRKCSNLGISLVGGN 111
            P  NRKS+    I H+ STL      ++      R+ EPR+ ++ETRKCSNLGISLVGGN
Sbjct: 1159 PTVNRKSTGASIIYHDMSTLNLQKSDQNTDSTSLRAYEPRYFIMETRKCSNLGISLVGGN 1218

Query: 112  AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAH 169
            AVGI+VHSV   SL Y+AGLRTGD ILEYNGTDLR ATAEEAA+ELAKPA+KVTVLA 
Sbjct: 1219 AVGIFVHSVNLNSLAYNAGLRTGDHILEYNGTDLREATAEEAAFELAKPAEKVTVLAQ 1276

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321470311|gb|EFX81288.1| hypothetical protein DAPPUDRAFT_242543 [Daphnia pulex]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 105/255 (41%), Positives = 131/255 (51%), Gaps = 85/255 (33%)

Query: 1    MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELE--------GSGSSSAENESVSGRG- 51
            MRSATYQLAA VL QCG+SITMLVQY+P KY EL+        G  S ++ +    G G 
Sbjct: 1455 MRSATYQLAACVLHQCGDSITMLVQYNPTKYQELQEMNGMNLMGPPSMTSSSSECDGNGE 1514

Query: 52   ---------SGSPTPCNSP----------------------------------------G 62
                     SGSPTPCNSP                                        G
Sbjct: 1515 GSHQRSKSRSGSPTPCNSPRHSRDHSNNSGNGSSSKADILDPGATTLRNTLQFDRMIDRG 1574

Query: 63   TNRKSSIQHNTS---TLTRTHV-----------------------CKDERSGEPRFLMIE 96
            +  +SS+    S   TLTR H                        C+D R  EPR + +E
Sbjct: 1575 SESRSSVVRPPSIHGTLTRHHALATLKRPTSMTTTSPVVDENSSKCRD-RDREPRLVYLE 1633

Query: 97   TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYE 156
             +K  +LGISLVGGNAVGI++H+VQ+ S  + AGLR GDRILE+NG +LR +TAE+AAYE
Sbjct: 1634 MKKAHSLGISLVGGNAVGIFIHAVQNDSPAFKAGLRCGDRILEFNGVNLRDSTAEQAAYE 1693

Query: 157  LAKPADKVTVLAHSD 171
            LAKP +KVT++   D
Sbjct: 1694 LAKPTEKVTLIVQHD 1708

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170059255|ref|XP_001865284.1| Dlg5 protein [Culex quinquefasciatus] gi|167878112|gb|EDS41495.1| Dlg5 protein [Culex quinquefasciatus]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 91/189 (48%), Positives = 114/189 (60%), Gaps = 29/189 (15%)

Query: 1   MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNS 60
           +R ATY+LAA VLRQCGNSITMLV Y+P+ Y+ L  S  +           S SPTP NS
Sbjct: 507 LRKATYELAAHVLRQCGNSITMLVLYNPEVYNNLTTSEDNIGH--------SNSPTPQNS 558

Query: 61  PGTNRKSSIQH-NTSTLT----------------RTHVCKDER----SGEPRFLMIETRK 99
           P    +S I   NT+T+                 ++ +    +      +PR +++ETRK
Sbjct: 559 PRAMGRSIISAVNTTTVNAISTIVPSVLSSNDGQQSQLANTSQGVHYKEQPRLIIMETRK 618

Query: 100 CSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK 159
            SNLGISLVGGNA GI+VH VQ  SL  +AGLR GD+ILE+NG DL  +TAE AA E+AK
Sbjct: 619 SSNLGISLVGGNAHGIFVHGVQKDSLADNAGLRIGDQILEFNGADLTRSTAEHAALEIAK 678

Query: 160 PADKVTVLA 168
           PAD V VL 
Sbjct: 679 PADNVAVLV 687

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241311069|ref|XP_002407838.1| discs large protein, putative [Ixodes scapularis] gi|215497232|gb|EEC06726.1| discs large protein, putative [Ixodes scapularis]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 94/184 (51%), Positives = 116/184 (63%), Gaps = 22/184 (11%)

Query: 1    MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNS 60
            MR+ATYQLAASVLRQC +SITMLVQ++PDKY E+      ++++ + S   S   TP  S
Sbjct: 1039 MRNATYQLAASVLRQCRDSITMLVQFNPDKYREV------ASDHVTTSDENSPVDTPAAS 1092

Query: 61   PG---TNRKSSI--------QHNTSTLTR-THVCKDER--SGEPRFLMIETRKCSNLGIS 106
            P    + R   I           TSTLTR    C   +    EPR + +  +  S+LGI+
Sbjct: 1093 PKMRHSKRPDLICISNDDVPSSATSTLTRQKQSCVSSKGCRAEPRAVFL-NKATSSLGIT 1151

Query: 107  LVGGNAVGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 165
            L+GGNAVGI+VHSVQ  S      GL  GDRILEYN TDLR ATAEEAAYELA+PA+KV 
Sbjct: 1152 LLGGNAVGIFVHSVQEDSPASGVEGLHPGDRILEYNNTDLRNATAEEAAYELARPAEKVQ 1211

Query: 166  VLAH 169
            +LA 
Sbjct: 1212 ILAQ 1215

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297389|ref|XP_317627.4| AGAP007865-PA [Anopheles gambiae str. PEST] gi|157015171|gb|EAA12923.4| AGAP007865-PA [Anopheles gambiae str. PEST]

 Score =  149 bits (375), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 96/214 (44%), Positives = 115/214 (53%), Gaps = 54/214 (25%)

Query: 1    MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNS 60
            +R ATY+LAA VLRQCGNSITMLV Y+P  Y  L  S  + A         SGSPTP NS
Sbjct: 1158 LRKATYELAAHVLRQCGNSITMLVLYNPVVYSNLTTSEDNVAR--------SGSPTPQNS 1209

Query: 61   PGTNRKSSIQ----------------HNTSTLTR-----------THVCKDERSG----- 88
            P +  +S I                   TS+L +           T +  DE  G     
Sbjct: 1210 PRSMGRSLISAVNTTAVNAMTGTMTAPKTSSLVKAQEFSDSLEHQTQLHDDEEDGSVAVG 1269

Query: 89   --------------EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTG 134
                          +PR + IETRK SNLGI+LVGGNA GI+VH VQ  S+   AGL  G
Sbjct: 1270 SSGVGGGQSNMYKEQPREIYIETRKTSNLGITLVGGNAYGIFVHGVQKDSIADQAGLLVG 1329

Query: 135  DRILEYNGTDLRAATAEEAAYELAKPADKVTVLA 168
            D+ILE+NGTD+R +TAE AA E+AKPAD V VL 
Sbjct: 1330 DQILEFNGTDMRRSTAEHAALEIAKPADHVKVLV 1363

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
FB|FBgn0032363	1916	CG6509 [Drosophila melanogaste	0.462	0.041	0.462	1.7e-23
UNIPROTKB|F1NIA7	1830	DLG5 "Uncharacterized protein"	0.647	0.061	0.341	7.1e-09
UNIPROTKB|F6X528	1919	DLG5 "Uncharacterized protein"	0.930	0.083	0.301	7.9e-09
UNIPROTKB|Q8TDM6	1919	DLG5 "Disks large homolog 5" [	0.936	0.084	0.291	1e-08
UNIPROTKB|E2R2E4	1922	DLG5 "Uncharacterized protein"	0.936	0.084	0.299	6.2e-09
ZFIN|ZDB-GENE-030131-3149	1958	dlg5a "discs, large homolog 5a	0.456	0.040	0.387	2.9e-10
UNIPROTKB|F1MSI9	1922	DLG5 "Uncharacterized protein"	0.682	0.061	0.330	4.8e-09
ZFIN|ZDB-GENE-040718-58	1204	tjp2b "tight junction protein	0.520	0.074	0.358	7.3e-09
FB|FBgn0262614	2090	pyd "polychaetoid" [Drosophila	0.387	0.032	0.405	7.6e-09
UNIPROTKB|D4A319	1904	D4A319 "Uncharacterized protei	0.635	0.057	0.321	7.8e-09

FB|FBgn0032363 CG6509 [Drosophila melanogaster (taxid:7227)]

 Score = 173 (66.0 bits), Expect = 1.7e-23, Sum P(2) = 1.7e-23
 Identities = 37/80 (46%), Positives = 44/80 (55%)

Query:    91 RFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXXXX 150
             R++ +   K  NLGI L GGN VGIYVH V  GS    AG+R GD+ILEYNG DL     
Sbjct:  1498 RYVTLHMDKSKNLGIKLFGGNKVGIYVHDVAVGSPSDHAGIRKGDQILEYNGVDLSGVTA 1557

Query:   151 XXXXXXXXKPADKVTVLAHS 170
                     K  D VT+L  +
Sbjct:  1558 EQAANEISKLTDTVTMLVQN 1577

GO:0019730 "antimicrobial humoral response" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|F1NIA7 DLG5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 7.1e-09, Sum P(2) = 7.1e-09
 Identities = 42/123 (34%), Positives = 62/123 (50%)

Query:    56 TPCNSPGTNRKSSIQHNT-STLTR---THVCKDERSG------EPRFLMIETRKCSNLGI 105
             +P N   ++  SS   N+ STL R   + V   ER        EPR + ++ +    LGI
Sbjct:  1205 SPLNLETSSFASSQSQNSLSTLPRISISPVSAGERRKDRPYMEEPRHVKVQ-KGSEPLGI 1263

Query:   106 SLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXXXXXXXXXXXXKPADKVT 165
             S+V G   GI+V  V  GS+ + AGL  GD++LE+NG +LR            +  D +T
Sbjct:  1264 SIVSGENGGIFVSKVTGGSIAHQAGLEYGDQLLEFNGINLRNATEQQARLIIGQQCDTIT 1323

Query:   166 VLA 168
             +LA
Sbjct:  1324 ILA 1326

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IEA

UNIPROTKB|F6X528 DLG5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 148 (57.2 bits), Expect = 7.9e-09, P = 7.9e-09
 Identities = 53/176 (30%), Positives = 78/176 (44%)

Query:     1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELXXXXXXXX----XXXXXXXRGSGSPT 56
             +RSAT Q A  ++ Q  ++IT+L QY+P   H+L                   +GS +PT
Sbjct:  1402 LRSATEQQARLIIGQQCDTITILAQYNPHM-HQLSSHSRSSSHLDPASTHAALQGSSAPT 1460

Query:    57 PCN----SPGTNRKS---SIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVG 109
             P +     P   +     + Q   ST  R     ++++ EPR + I+  +   LG+ L G
Sbjct:  1461 PEHPSVIDPLMEQDEGPGTPQAKQST-PRMVGDANKKTPEPRVVFIKKSQLE-LGVHLCG 1518

Query:   110 GNAVGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRXXXXXXXXXXXXKPADKV 164
             GN  G++V  V+  S      GL  GD ILEY   D+R            KP D V
Sbjct:  1519 GNLHGVFVAEVEDDSPAKGPDGLVVGDLILEYGSLDVRNRTVEEVYVEMLKPKDSV 1574

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q8TDM6 DLG5 "Disks large homolog 5" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 1.0e-08, P = 1.0e-08
 Identities = 51/175 (29%), Positives = 77/175 (44%)

Query:     1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELXXXXXXXX----XXXXXXXRGSGSPT 56
             +RSAT Q A  ++ Q  ++IT+L QY+P   H+L                   +GSG+ T
Sbjct:  1402 LRSATEQQARLIIGQQCDTITILAQYNPH-VHQLSSHSRSSSHLDPAGTHSTLQGSGTTT 1460

Query:    57 PCNSPGTNRKSSIQHNTST----LTRTHVCKD--ERSGEPRFLMIETRKCSNLGISLVGG 110
             P +    +         ST     + + +  D  +++ EPR + I+  +   LG+ L GG
Sbjct:  1461 PEHPSVIDPLMEQDEGPSTPPAKQSSSRIAGDANKKTLEPRVVFIKKSQLE-LGVHLCGG 1519

Query:   111 NAVGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRXXXXXXXXXXXXKPADKV 164
             N  G++V  V+  S      GL  GD ILEY   D+R            KP D V
Sbjct:  1520 NLHGVFVAEVEDDSPAKGPDGLVPGDLILEYGSLDVRNKTVEEVYVEMLKPRDGV 1574

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=NAS

GO:0016337 "cell-cell adhesion" evidence=NAS

GO:0030159 "receptor signaling complex scaffold activity" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0008013 "beta-catenin binding" evidence=IDA

GO:0008092 "cytoskeletal protein binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0007165 "signal transduction" evidence=TAS

GO:0008285 "negative regulation of cell proliferation" evidence=TAS

UNIPROTKB|E2R2E4 DLG5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 149 (57.5 bits), Expect = 6.2e-09, P = 6.2e-09
 Identities = 53/177 (29%), Positives = 79/177 (44%)

Query:     1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELXXXXXXXX----XXXXXXXRGSGSPT 56
             +RSAT Q A  ++ Q  ++IT+L QY+P   H+L                   +GS +PT
Sbjct:  1403 LRSATEQQARLIIGQQCDTITILAQYNPHM-HQLSSHSRSSSHLDPASTHAALQGSSAPT 1461

Query:    57 PCN----SPGTNRKS---SIQHNTSTLTRTHVCK-DERSGEPRFLMIETRKCSNLGISLV 108
             P +     P   +     + Q   ST +   V   ++++ EPR + I+  +   LG+ L 
Sbjct:  1462 PEHPSVIDPLMEQDEGPGTPQAKQSTPSSRMVGDANKKTPEPRVVFIKKSQLE-LGVHLC 1520

Query:   109 GGNAVGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRXXXXXXXXXXXXKPADKV 164
             GGN  G++V  V+  S      GL  GD ILEY   D+R            KP D V
Sbjct:  1521 GGNLHGVFVAEVEDDSPAKGPDGLVVGDLILEYGSLDVRNRTVEEVYVEMLKPKDSV 1577

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-030131-3149 dlg5a "discs, large homolog 5a (Drosophila)" [Danio rerio (taxid:7955)]

 Score = 147 (56.8 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
 Identities = 31/80 (38%), Positives = 45/80 (56%)

Query:    89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXX 148
             EPR +M+  +    LGIS+V G   GI+V  V  GS+ + AGL  GD++LEYNG +LR  
Sbjct:  1378 EPRNVMVH-KGAEPLGISIVSGENGGIFVSKVTGGSIAHQAGLEYGDQLLEYNGINLRNA 1436

Query:   149 XXXXXXXXXXKPADKVTVLA 168
                       +  D +T++A
Sbjct:  1437 TEQQARLIIGQQCDTITIMA 1456

GO:0005622 "intracellular" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

UNIPROTKB|F1MSI9 DLG5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 150 (57.9 bits), Expect = 4.8e-09, P = 4.8e-09
 Identities = 45/136 (33%), Positives = 66/136 (48%)

Query:    50 RGSGSPTPCNSP--------GTNRKSSIQHNTSTLTRTHV---CKDERSG------EPRF 92
             RGS S + C++P        G +  S  Q + +TL R  V      ER        EPR 
Sbjct:  1292 RGSLSHSECSTPPQSPLSVEGLSSCSQSQTSAATLPRIAVNPAAPGERRKDRPYVEEPRH 1351

Query:    93 LMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXXXXXX 152
             + ++ +    LGIS+V G   G+YV  V  GS+ + AGL  GD++LE+NG +LR      
Sbjct:  1352 VKLQ-KGSEPLGISIVSGEKGGVYVSKVTGGSIAHQAGLEYGDQLLEFNGINLRSATEQQ 1410

Query:   153 XXXXXXKPADKVTVLA 168
                   +  D +T+LA
Sbjct:  1411 ARLIIGQQCDTITILA 1426

GO:0008092 "cytoskeletal protein binding" evidence=IEA

GO:0008013 "beta-catenin binding" evidence=IEA

GO:0005913 "cell-cell adherens junction" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

ZFIN|ZDB-GENE-040718-58 tjp2b "tight junction protein 2b (zona occludens 2)" [Danio rerio (taxid:7955)]

 Score = 137 (53.3 bits), Expect = 7.3e-09, Sum P(2) = 7.3e-09
 Identities = 33/92 (35%), Positives = 48/92 (52%)

Query:    83 KDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
             +DE    P  +M+  +K  ++G+ L GGN VGI++  VQ GS     GLR GD+I++ N 
Sbjct:   505 EDEAIYGPNTVMVSFQKGESVGLRLAGGNDVGIFIAGVQEGSPAEEEGLRVGDQIMKVNN 564

Query:   143 TDLRXXXXXXXXXXXXK-P-ADKVTVLAHSDT 172
              D R            + P  + VT+LA S T
Sbjct:   565 VDFRGIVREEAVLFLLEIPRGEVVTILAQSKT 596

GO:0005923 "tight junction" evidence=IEA

GO:0008150 "biological_process" evidence=ND

FB|FBgn0262614 pyd "polychaetoid" [Drosophila melanogaster (taxid:7227)]

 Score = 128 (50.1 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
 Identities = 28/69 (40%), Positives = 42/69 (60%)

Query:    77 TRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDR 136
             +R  + ++ +S EPRF+  +  K  ++GI L GGN  GI+V +VQ GS     GL  GD+
Sbjct:   393 SRRQLYEERQSAEPRFISFQ--KEGSVGIRLTGGNEAGIFVTAVQPGSPASLQGLMPGDK 450

Query:   137 ILEYNGTDL 145
             IL+ N  D+
Sbjct:   451 ILKVNDMDM 459

GO:0004385 "guanylate kinase activity" evidence=ISS;NAS

GO:0007254 "JNK cascade" evidence=NAS

GO:0005912 "adherens junction" evidence=IDA;NAS;TAS

GO:0007391 "dorsal closure" evidence=NAS;TAS

GO:0046328 "regulation of JNK cascade" evidence=NAS

GO:0007163 "establishment or maintenance of cell polarity" evidence=NAS

GO:0016337 "cell-cell adhesion" evidence=IMP

GO:0035147 "branch fusion, open tracheal system" evidence=IMP

GO:0005913 "cell-cell adherens junction" evidence=IDA

GO:0035156 "fusion cell fate specification" evidence=IMP

GO:0048812 "neuron projection morphogenesis" evidence=IMP

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0030155 "regulation of cell adhesion" evidence=IGI;IMP

GO:0030424 "axon" evidence=IDA

GO:0016323 "basolateral plasma membrane" evidence=IDA

GO:0045177 "apical part of cell" evidence=IDA

GO:0005917 "nephrocyte diaphragm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0050839 "cell adhesion molecule binding" evidence=IPI

GO:0036059 "nephrocyte diaphragm assembly" evidence=IMP

GO:0022416 "chaeta development" evidence=IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0060439 "trachea morphogenesis" evidence=IMP

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|D4A319 D4A319 "Uncharacterized protein" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 7.8e-09, P = 7.8e-09
 Identities = 36/112 (32%), Positives = 57/112 (50%)

Query:    58 CNSPGTNRKSSIQHNTSTLTRTHVCKDERS-GEPRFLMIETRKCSNLGISLVGGNAVGIY 116
             C+ P T+  +  +   ++ +     KD     EPR + ++ +    LGIS+V G   GIY
Sbjct:  1296 CSQPQTSASTLPRIAVNSSSHGERRKDRPFVEEPRHVKVQ-KGSEPLGISIVSGEKGGIY 1354

Query:   117 VHSVQSGSLGYSAGLRTGDRILEYNGTDLRXXXXXXXXXXXXKPADKVTVLA 168
             V  V  GS+ + AGL  GD++LE+NG +LR            +  D +T+LA
Sbjct:  1355 VSKVTMGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILA 1406

GO:0005622 "intracellular" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	173
cd00992	82	cd00992, PDZ_signaling, PDZ domain found in a vari	9e-16
smart00228	85	smart00228, PDZ, Domain present in PSD-95, Dlg, an	1e-15
pfam00595	80	pfam00595, PDZ, PDZ domain (Also known as DHR or G	3e-13
cd00136	70	cd00136, PDZ, PDZ domain, also called DHR (Dlg hom	1e-12
cd00987	90	cd00987, PDZ_serine_protease, PDZ domain of tryspi	1e-06
pfam13180	81	pfam13180, PDZ_2, PDZ domain	1e-06
cd00989	79	cd00989, PDZ_metalloprotease, PDZ domain of bacter	1e-05
cd00988	85	cd00988, PDZ_CTP_protease, PDZ domain of C-termina	6e-05
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	4e-04
TIGR02037	428	TIGR02037, degP_htrA_DO, periplasmic serine protea	0.001
COG0793	406	COG0793, Prc, Periplasmic protease [Cell envelope	0.001

>gnl|CDD|238492 cd00992, PDZ_signaling, PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

 Score = 68.0 bits (167), Expect = 9e-16
 Identities = 31/80 (38%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 90  PRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
            R + +       LG SL GG     GI+V  V+ G      GLR GDRILE NG  +  
Sbjct: 1   VRTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEG 60

Query: 148 ATAEEAAYELAKPADKVTVL 167
            T EEA   L    D+VT+ 
Sbjct: 61  LTHEEAVELLKNSGDEVTLT 80

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases. Length = 82

>gnl|CDD|214570 smart00228, PDZ, Domain present in PSD-95, Dlg, and ZO-1/2

 Score = 67.8 bits (166), Expect = 1e-15
 Identities = 33/73 (45%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 97  TRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAA 154
            +    LG SLVGG     G+ V SV  GS    AGLR GD ILE NGT +   T  EA 
Sbjct: 8   EKGGGGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLRVGDVILEVNGTSVEGLTHLEAV 67

Query: 155 YELAKPADKVTVL 167
             L K   KVT+ 
Sbjct: 68  DLLKKAGGKVTLT 80

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities. Length = 85

>gnl|CDD|201332 pfam00595, PDZ, PDZ domain (Also known as DHR or GLGF)

 Score = 61.5 bits (150), Expect = 3e-13
 Identities = 29/77 (37%), Positives = 39/77 (50%), Gaps = 2/77 (2%)

Query: 93  LMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATA 150
           + +E      LG SLVGG+    GI+V  V  G    + GL+ GDRIL  NG DL   + 
Sbjct: 2   VTLEKSGRGGLGFSLVGGSDGDPGIFVSEVLPGGAAEAGGLQEGDRILSINGQDLENLSH 61

Query: 151 EEAAYELAKPADKVTVL 167
           +EA   L     +VT+ 
Sbjct: 62  DEAVLALKGSGGEVTLT 78

PDZ domains are found in diverse signaling proteins. Length = 80

>gnl|CDD|238080 cd00136, PDZ, PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

 Score = 59.2 bits (144), Expect = 1e-12
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL-AKPA 161
           LG S+ GG   G+ V SV+ GS    AGL+ GD IL  NGTD++  T E+ A  L  +  
Sbjct: 3   LGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVG 62

Query: 162 DKVTV 166
           +KVT+
Sbjct: 63  EKVTL 67

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(post synaptic density protein), DlgA (Drosophila disc large tumor suppressor), and ZO1, a mammalian tight junction protein. Length = 70

>gnl|CDD|238487 cd00987, PDZ_serine_protease, PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

 Score = 44.6 bits (106), Expect = 1e-06
 Identities = 22/53 (41%), Positives = 28/53 (52%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
           G+ V SV  GS    AGL+ GD IL  NG  +++      A    KP DKVT+
Sbjct: 25  GVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVADLRRALAELKPGDKVTL 77

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 90

>gnl|CDD|221961 pfam13180, PDZ_2, PDZ domain

 Score = 44.2 bits (105), Expect = 1e-06
 Identities = 21/64 (32%), Positives = 31/64 (48%)

Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPAD 162
           +G+ +V     G+ V SV+ GS    AGL+ GD IL  +G  + + T         KP D
Sbjct: 3   IGVRVVQNEGTGVTVVSVKEGSPAAKAGLKPGDIILSIDGKKVNSLTELIEVILNGKPGD 62

Query: 163 KVTV 166
            V +
Sbjct: 63  TVKL 66

Length = 81

>gnl|CDD|238489 cd00989, PDZ_metalloprotease, PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)

Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PA 161
           LG    GG  +   +  V  GS    AGL+ GDRIL  NG   +  + E+    + + P 
Sbjct: 3   LGFV-PGGPPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQ--KIKSWEDLVDAVQENPG 59

Query: 162 DKVTV 166
             +T+
Sbjct: 60  KPLTL 64

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 79

>gnl|CDD|238488 cd00988, PDZ_CTP_protease, PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTV 166
           G+ + SV  GS    AG++ GD I+  +G  +   + E+    L  K   KV +
Sbjct: 14  GLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRL 67

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins. Length = 85

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 39.5 bits (93), Expect = 4e-04
 Identities = 18/54 (33%), Positives = 24/54 (44%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           G+ V  V SGS    AGL+ GD IL  N   + +          AK   +V +L
Sbjct: 363 GVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSVAELRKVLARAKKGGRVALL 416

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|233695 TIGR02037, degP_htrA_DO, periplasmic serine protease, Do/DeqQ family

 Score = 38.4 bits (90), Expect = 0.001
 Identities = 19/53 (35%), Positives = 23/53 (43%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
           G  V  V  GS    AGL+ GD I   NG  + +      A    KP  KVT+
Sbjct: 258 GALVAQVLPGSPAEKAGLKAGDVITSVNGKPISSFADLRRAIGTLKPGKKVTL 310

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures [Protein fate, Protein folding and stabilization, Protein fate, Degradation of proteins, peptides, and glycopeptides]. Length = 428

>gnl|CDD|223864 COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]

 Score = 38.5 bits (90), Expect = 0.001
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)

Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPA 161
           +GI L   +  G+ V S   GS    AG++ GD I++ +G  +   + +EA   +  KP 
Sbjct: 102 IGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPG 161

Query: 162 DKVTV 166
            KVT+
Sbjct: 162 TKVTL 166

Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
KOG3209|consensus	984		99.78
KOG3209|consensus	984		99.76
KOG3550|consensus	207		99.72
PF00595	81	PDZ: PDZ domain (Also known as DHR or GLGF) Coordi	99.69
KOG3551|consensus	506		99.49
cd00992	82	PDZ_signaling PDZ domain found in a variety of Eum	99.42
KOG3549|consensus	505		99.42
smart00228	85	PDZ Domain present in PSD-95, Dlg, and ZO-1/2. Als	99.4
KOG3580|consensus	1027		99.36
cd00136	70	PDZ PDZ domain, also called DHR (Dlg homologous re	99.34
PF13180	82	PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_	99.25
KOG3553|consensus	124		99.18
KOG3580|consensus	1027		99.15
cd00988	85	PDZ_CTP_protease PDZ domain of C-terminal processi	99.12
KOG1892|consensus	1629		98.97
KOG3606|consensus	358		98.92
cd00991	79	PDZ_archaeal_metalloprotease PDZ domain of archaea	98.87
KOG3571|consensus	626		98.86
cd00990	80	PDZ_glycyl_aminopeptidase PDZ domain associated wi	98.82
KOG3651|consensus	429		98.81
KOG3542|consensus	1283		98.77
PLN00049	389	carboxyl-terminal processing protease; Provisional	98.74
COG0793	406	Prc Periplasmic protease [Cell envelope biogenesis	98.74
cd00987	90	PDZ_serine_protease PDZ domain of tryspin-like ser	98.71
cd00989	79	PDZ_metalloprotease PDZ domain of bacterial and pl	98.69
cd00986	79	PDZ_LON_protease PDZ domain of ATP-dependent LON s	98.66
TIGR00225	334	prc C-terminal peptidase (prc). A C-terminal pepti	98.64
KOG3552|consensus	1298		98.61
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.57
TIGR02037	428	degP_htrA_DO periplasmic serine protease, Do/DeqQ	98.52
KOG0609|consensus	542		98.49
PRK11186	667	carboxy-terminal protease; Provisional	98.45
TIGR01713	259	typeII_sec_gspC general secretion pathway protein	98.43
PRK10139	455	serine endoprotease; Provisional	98.31
PRK10898	353	serine endoprotease; Provisional	98.29
PRK10942	473	serine endoprotease; Provisional	98.27
TIGR02038	351	protease_degS periplasmic serine pepetdase DegS. T	98.26
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.26
KOG3605|consensus	829		98.24
PRK10139	455	serine endoprotease; Provisional	98.18
PRK10942	473	serine endoprotease; Provisional	98.12
KOG3605|consensus	829		98.12
KOG3938|consensus	334		98.1
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	98.08
PRK10779	449	zinc metallopeptidase RseP; Provisional	98.04
KOG4371|consensus	1332		97.98
TIGR00054	420	RIP metalloprotease RseP. A model that detects fra	97.74
KOG0606|consensus	1205		97.74
PF14685	88	Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6	97.72
TIGR02860	402	spore_IV_B stage IV sporulation protein B. SpoIVB,	97.67
KOG3129|consensus	231		97.62
PF04495	138	GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro:	97.59
COG0265	347	DegQ Trypsin-like serine proteases, typically peri	97.49
PRK09681	276	putative type II secretion protein GspC; Provision	97.19
TIGR03279	433	cyano_FeS_chp putative FeS-containing Cyanobacteri	97.1
KOG3549|consensus	505		97.05
COG3975	558	Predicted protease with the C-terminal PDZ domain	96.99
KOG3532|consensus	1051		96.94
COG3480	342	SdrC Predicted secreted protein containing a PDZ d	96.93
KOG3551|consensus	506		96.84
KOG1320|consensus	473		96.78
COG3031	275	PulC Type II secretory pathway, component PulC [In	96.58
KOG1738|consensus	638		96.42
KOG1421|consensus	955		95.69
KOG4407|consensus	1973		94.2
KOG4371|consensus	1332		92.85
COG0750	375	Predicted membrane-associated Zn-dependent proteas	90.75
KOG3834|consensus	462		90.29
PF12812	78	PDZ_1: PDZ-like domain	89.78
PF11874	183	DUF3394: Domain of unknown function (DUF3394); Int	88.66
KOG3834|consensus	462		87.48
KOG3550|consensus	207		87.05
KOG4407|consensus	1973		86.06
KOG0708|consensus	359		84.86
KOG0792|consensus	1144		81.91

>KOG3209|consensus

Probab=99.78  E-value=1.1e-17  Score=142.16  Aligned_cols=169  Identities=17%  Similarity=0.304  Sum_probs=111.0

Q ss_pred             CCcccHHHHHHHHhhC--CCeEEEEEEeCCCccC-----CCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCC
Q psy7774           1 MRSATYQLAASVLRQC--GNSITMLVQYSPDKYH-----ELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNT   73 (173)
Q Consensus         1 l~~~th~~av~~L~~~--g~~v~L~V~r~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~   73 (173)
                      +++++|.|||+||++|  |.++.|+|+|......     ..+.+....+.....+.....+..|.. ++ .+....+...
T Consensus       536 vr~L~h~qvvdmlke~piG~r~~Llv~RGgp~s~~ktpk~~~r~~~~~s~~~s~sap~i~q~~Pfp-p~-~rs~~pd~t~  613 (984)
T KOG3209|consen  536 VRALTHTQVVDMLKECPIGSRVHLLVKRGGPPSPSKTPKAADRKENQGSNQMSSSAPLIPQKLPFP-PT-SRSEEPDNTR  613 (984)
T ss_pred             ccccchHHHHHHHHhccCCcceeEEEecCCCCCCCcCcchhhhccCCCCccccccccccCCCCCCC-Cc-ccccCCcccc
Confidence            4789999999999996  8999999998655321     011111111111111111111222211 11 1111111111


Q ss_pred             Ccccc--------------------CCCCCCCCCCCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cC
Q psy7774          74 STLTR--------------------THVCKDERSGEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AG  130 (173)
Q Consensus        74 ~~~~~--------------------~~~~~~~~~~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~g  130 (173)
                      .+++.                    .+..+.+......+|.|+|.. .||||+|.||.  +.+|||..|.+.|+|+. ++
T Consensus       614 ~~~qrkpdp~~~we~Sraiyesr~~Ps~tsn~~pdk~ldV~L~rke-sGFGFRiLGG~ep~qpi~iG~Iv~lGaAe~DGR  692 (984)
T KOG3209|consen  614 NTLQRKPDPTEEWEKSRAIYESRMRPSSTSNQKPDKELDVFLRRKE-SGFGFRILGGDEPGQPIYIGAIVPLGAAEEDGR  692 (984)
T ss_pred             cccccCCChHHHhhhcccchhccCCCCCccccCCccceeEEEEeec-cccceEEecCCCCCCeeEEeeeeecccccccCc
Confidence            11111                    111223333466789999987 89999999998  56899999999999999 55


Q ss_pred             CCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         131 LRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       131 L~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      |+.||.|+.|+|.++++++|.+++.+|.  ...+.|.|+|+|..
T Consensus       693 L~~gDElv~iDG~pV~GksH~~vv~Lm~~AArnghV~LtVRRkv  736 (984)
T KOG3209|consen  693 LREGDELVCIDGIPVEGKSHSEVVDLMEAAARNGHVNLTVRRKV  736 (984)
T ss_pred             ccCCCeEEEecCeeccCccHHHHHHHHHHHHhcCceEEEEeeee
Confidence            9999999999999999999999999995  45789999999864

>KOG3209|consensus

Probab=99.76  E-value=2.1e-17  Score=140.44  Aligned_cols=167  Identities=15%  Similarity=0.195  Sum_probs=108.5

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCCccCCCcCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCcCCCCCccccCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGS-PTPCNSPGTNRKSSIQHNTSTLTRTH   80 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~   80 (173)
                      .|++|.+.|++||.+|..|+|+|....+...++....+.-.++..+.+..... -.|.  +.+.-+...++.....-...
T Consensus       812 ~~lsHadiv~LIKdaGlsVtLtIip~ee~~~~~~~~sa~~~s~~t~~~~~~q~~glp~--~~~s~~~~~pqpdt~~~~~~  889 (984)
T KOG3209|consen  812 LNLSHADIVSLIKDAGLSVTLTIIPPEEAGPPTSMTSAEKQSPFTQNGPYEQQYGLPG--PRPSVYEEHPQPDTFQGLSI  889 (984)
T ss_pred             eccCchhHHHHHHhcCceEEEEEcChhccCCCCCCcchhhcCcccccCCHhHccCCCC--CCccccccCCCCccccceec
Confidence            57899999999999999999999755443222211111111111110100000 0000  00000111111100000000


Q ss_pred             CCCCCCCCCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy7774          81 VCKDERSGEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYEL  157 (173)
Q Consensus        81 ~~~~~~~~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l  157 (173)
                      ...........+|+|.|+. .||||+|+||.  ..++||-++..+|||.+ +++++||+|++|||++.++++|..|+.++
T Consensus       890 ~~r~~qn~~~~~VelErG~-kGFGFSiRGGreynM~LfVLRlAeDGPA~rdGrm~VGDqi~eINGesTkgmtH~rAIelI  968 (984)
T KOG3209|consen  890 NDRMSQNGDLYTVELERGA-KGFGFSIRGGREYNMDLFVLRLAEDGPAIRDGRMRVGDQITEINGESTKGMTHDRAIELI  968 (984)
T ss_pred             cccccccCCeeEEEeeccc-cccceEeecccccccceEEEEeccCCCccccCceeecceEEEecCcccCCCcHHHHHHHH
Confidence            1111223467889999988 99999999998  56899999999999999 55999999999999999999999999999


Q ss_pred             hCCCCeEEEEEEEC
Q psy7774         158 AKPADKVTVLAHSD  171 (173)
Q Consensus       158 ~~~g~~v~l~v~r~  171 (173)
                      ++-|..|.+.++|.
T Consensus       969 k~gg~~vll~Lr~g  982 (984)
T KOG3209|consen  969 KQGGRRVLLLLRRG  982 (984)
T ss_pred             HhCCeEEEEEeccC
Confidence            99988888887764

>KOG3550|consensus

Probab=99.72  E-value=2.2e-17  Score=116.87  Aligned_cols=83  Identities=24%  Similarity=0.490  Sum_probs=78.2

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      -||.|.|.|.+ +||||.+.||+  .++|||++|.|||.|++ +||+.||++++|||+++++-.|+.++.+|+.+-+.|.
T Consensus        90 hprvvelpktd-eglgfnvmggkeqnspiyisriipggvadrhgglkrgdqllsvngvsvege~hekavellkaa~gsvk  168 (207)
T KOG3550|consen   90 HPRVVELPKTD-EGLGFNVMGGKEQNSPIYISRIIPGGVADRHGGLKRGDQLLSVNGVSVEGEHHEKAVELLKAAVGSVK  168 (207)
T ss_pred             CCceeecCccc-cccceeeccCcccCCceEEEeecCCccccccCcccccceeEeecceeecchhhHHHHHHHHHhcCcEE
Confidence            58999999988 99999999998  67999999999999999 7799999999999999999999999999999999999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |.|+|.+
T Consensus       169 lvvrytp  175 (207)
T KOG3550|consen  169 LVVRYTP  175 (207)
T ss_pred             EEEecCh
Confidence            9998854

>PF00595 PDZ: PDZ domain (Also known as DHR or GLGF) Coordinates are not yet available; InterPro: IPR001478 PDZ domains are found in diverse signalling proteins in bacteria, yeasts, plants, insects and vertebrates [, ]

Probab=99.69  E-value=2.6e-16  Score=102.49  Aligned_cols=78  Identities=36%  Similarity=0.566  Sum_probs=71.4

Q ss_pred             EEEEEccCCCcccEEEEccCC---CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          92 FLMIETRKCSNLGISLVGGNA---VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        92 ~v~l~~~~~~~lG~~l~gg~~---~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      +|++.|....+|||.+.++..   .++||..|.++++|+++||+.||+|++|||.++.++++.+++.+++.+++.++|+|
T Consensus         1 ~v~l~k~~~~~lG~~l~~~~~~~~~~~~V~~v~~~~~a~~~gl~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~L~V   80 (81)
T PF00595_consen    1 QVTLEKSGNGPLGFTLRGGSDNDEKGVFVSSVVPGSPAERAGLKVGDRILEINGQSVRGMSHDEVVQLLKSASNPVTLTV   80 (81)
T ss_dssp             EEEEEESTTSBSSEEEEEESTSSSEEEEEEEECTTSHHHHHTSSTTEEEEEETTEESTTSBHHHHHHHHHHSTSEEEEEE
T ss_pred             CEEEEeCCCCCcCEEEEecCCCCcCCEEEEEEeCCChHHhcccchhhhhheeCCEeCCCCCHHHHHHHHHCCCCcEEEEE
Confidence            367888666999999998875   49999999999999998899999999999999999999999999999888999988


Q ss_pred             E
Q psy7774         169 H  169 (173)
Q Consensus       169 ~  169 (173)
                      +
T Consensus        81 ~   81 (81)
T PF00595_consen   81 Q   81 (81)
T ss_dssp             E
T ss_pred             C
Confidence            5

PDZ domains can occur in one or multiple copies and are nearly always found in cytoplasmic proteins. They bind either the carboxyl-terminal sequences of proteins or internal peptide sequences []. In most cases, interaction between a PDZ domain and its target is constitutive, with a binding affinity of 1 to 10 microns. However, agonist-dependent activation of cell surface receptors is sometimes required to promote interaction with a PDZ protein. PDZ domain proteins are frequently associated with the plasma membrane, a compartment where high concentrations of phosphatidylinositol 4,5-bisphosphate (PIP2) are found. Direct interaction between PIP2 and a subset of class II PDZ domains (syntenin, CASK, Tiam-1) has been demonstrated. PDZ domains consist of 80 to 90 amino acids comprising six beta-strands (beta-A to beta-F) and two alpha-helices, A and B, compactly arranged in a globular structure. Peptide binding of the ligand takes place in an elongated surface groove as an anti-parallel beta-strand interacts with the beta-B strand and the B helix. The structure of PDZ domains allows binding to a free carboxylate group at the end of a peptide through a carboxylate-binding loop between the beta-A and beta-B strands.; GO: 0005515 protein binding; PDB: 3AXA_A 1WF8_A 1QAV_B 1QAU_A 1B8Q_A 1MC7_A 2KAW_A 1I16_A 1VB7_A 1WI4_A ....

>KOG3551|consensus

Probab=99.49  E-value=1.1e-13  Score=111.10  Aligned_cols=83  Identities=31%  Similarity=0.444  Sum_probs=77.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      ..|.|.+.|.+.+|||++|.||.  ..+|.|++|++|-+|++.+ |..||.|++|||.++.+.+|++++..||+.|..|.
T Consensus        84 ~~R~V~V~K~d~gGLGISIKGGreNkMPIlISKIFkGlAADQt~aL~~gDaIlSVNG~dL~~AtHdeAVqaLKraGkeV~  163 (506)
T KOG3551|consen   84 AERRVRVVKQDAGGLGISIKGGRENKMPILISKIFKGLAADQTGALFLGDAILSVNGEDLRDATHDEAVQALKRAGKEVL  163 (506)
T ss_pred             ccceeEEEEecCCcceEEeecCcccCCceehhHhccccccccccceeeccEEEEecchhhhhcchHHHHHHHHhhCceee
Confidence            45889999988899999999997  5699999999999999965 99999999999999999999999999999999999


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      +.|++.
T Consensus       164 levKy~  169 (506)
T KOG3551|consen  164 LEVKYM  169 (506)
T ss_pred             eeeeee
Confidence            999875

>cd00992 PDZ_signaling PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements

Probab=99.42  E-value=4.2e-12  Score=82.29  Aligned_cols=78  Identities=40%  Similarity=0.581  Sum_probs=68.1

Q ss_pred             EEEEEEccCCCcccEEEEccCC--CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          91 RFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~~--~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      +.+.+.+....+|||.+.++..  .+++|..|.++++|+.++|+.||+|++|||..+..+++.++...++.....+.|++
T Consensus         2 ~~~~l~~~~~~~~G~~~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~~~~~~~~~l~~~~~~v~l~v   81 (82)
T cd00992           2 RTVTLRKDPGGGLGFSLRGGKDSGGGIFVSRVEPGGPAERGGLRVGDRILEVNGVSVEGLTHEEAVELLKNSGDEVTLTV   81 (82)
T ss_pred             EEEEEEeCCCCCcCEEEeCcccCCCCeEEEEECCCChHHhCCCCCCCEEEEECCEEcCccCHHHHHHHHHhCCCeEEEEE
Confidence            4577777656899999987653  68999999999999999999999999999999999999999999987766777765

May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of PDZ domains an N-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in proteases.

>KOG3549|consensus

Probab=99.42  E-value=5.2e-13  Score=106.22  Aligned_cols=84  Identities=27%  Similarity=0.401  Sum_probs=78.0

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      ...|+|+|++.+-+|||++|.||.  ..+|+|++|.++-+|+..| |-.||-|++|||..+..++|++++.+|+++|+.|
T Consensus        53 s~eRtVtirRQ~vGGlGLSIKGGaEHn~PvviSkI~kdQaAd~tG~LFvGDAilqvNGi~v~~c~HeevV~iLRNAGdeV  132 (505)
T KOG3549|consen   53 SKERTVTIRRQKVGGLGLSIKGGAEHNLPVVISKIYKDQAADITGQLFVGDAILQVNGIYVTACPHEEVVNILRNAGDEV  132 (505)
T ss_pred             CCceeEEEEeeecCcceeeeccccccCccEEeehhhhhhhhhhcCceEeeeeeEEeccEEeecCChHHHHHHHHhcCCEE
Confidence            467999999988899999999997  5699999999999999966 9999999999999999999999999999999999


Q ss_pred             EEEEEEC
Q psy7774         165 TVLAHSD  171 (173)
Q Consensus       165 ~l~v~r~  171 (173)
                      +|+|++.
T Consensus       133 tlTV~~l  139 (505)
T KOG3549|consen  133 TLTVKHL  139 (505)
T ss_pred             EEEeHhh
Confidence            9998753

>smart00228 PDZ Domain present in PSD-95, Dlg, and ZO-1/2

Probab=99.40  E-value=9.7e-12  Score=80.84  Aligned_cols=80  Identities=43%  Similarity=0.541  Sum_probs=70.6

Q ss_pred             EEEEEEccCCCcccEEEEccCC--CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          91 RFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~~--~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      ..+.+.+.. ..|||.+..+..  .+++|..|.++++|+++||++||+|++|||..+.++++.+....++..+..+.|++
T Consensus         3 ~~~~~~~~~-~~~G~~~~~~~~~~~~~~i~~v~~~s~a~~~gl~~GD~I~~In~~~v~~~~~~~~~~~~~~~~~~~~l~i   81 (85)
T smart00228        3 RLVELEKGG-GGLGFSLVGGKDEGGGVVVSSVVPGSPAAKAGLKVGDVILEVNGTSVEGLTHLEAVDLLKKAGGKVTLTV   81 (85)
T ss_pred             EEEEEEECC-CcccEEEECCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence            456777776 899999987653  68999999999999999999999999999999999999999888887777999999


Q ss_pred             EEC
Q psy7774         169 HSD  171 (173)
Q Consensus       169 ~r~  171 (173)
                      .|+
T Consensus        82 ~r~   84 (85)
T smart00228       82 LRG   84 (85)
T ss_pred             EeC
Confidence            886

Also called DHR (Dlg homologous region) or GLGF (relatively well conserved tetrapeptide in these domains). Some PDZs have been shown to bind C-terminal polypeptides; others appear to bind internal (non-C-terminal) polypeptides. Different PDZs possess different binding specificities.

>KOG3580|consensus

Probab=99.36  E-value=1.6e-11  Score=103.76  Aligned_cols=79  Identities=39%  Similarity=0.620  Sum_probs=69.7

Q ss_pred             EEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEE
Q psy7774          91 RFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLA  168 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v  168 (173)
                      +.|...|  +..+|+.+.||++.||||..|..|++|+..||+.||+|+.||.+++.++..++|+..|.  ..|..|+|..
T Consensus       409 k~VrF~K--GdSvGLRLAGGNDVGIFVaGvqegspA~~eGlqEGDQIL~VN~vdF~nl~REeAVlfLL~lPkGEevtila  486 (1027)
T KOG3580|consen  409 KMVRFKK--GDSVGLRLAGGNDVGIFVAGVQEGSPAEQEGLQEGDQILKVNTVDFRNLVREEAVLFLLELPKGEEVTILA  486 (1027)
T ss_pred             eeEEeec--CCeeeeEeccCCceeEEEeecccCCchhhccccccceeEEeccccchhhhHHHHHHHHhcCCCCcEEeehh
Confidence            3444444  46999999999999999999999999999999999999999999999999999998885  5788999887


Q ss_pred             EEC
Q psy7774         169 HSD  171 (173)
Q Consensus       169 ~r~  171 (173)
                      ++.
T Consensus       487 Q~k  489 (1027)
T KOG3580|consen  487 QSK  489 (1027)
T ss_pred             hhh
Confidence            654

>cd00136 PDZ PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif)

Probab=99.34  E-value=1.3e-11  Score=77.76  Aligned_cols=67  Identities=45%  Similarity=0.606  Sum_probs=60.2

Q ss_pred             cccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC-CCCeEEEEE
Q psy7774         102 NLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLA  168 (173)
Q Consensus       102 ~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~-~g~~v~l~v  168 (173)
                      +|||.+.+....+++|..|.++++|+.+||+.||+|++|||.++.++++.++...++. .+..+.|++
T Consensus         2 ~~G~~~~~~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v   69 (70)
T cd00136           2 GLGFSIRGGTEGGVVVLSVEPGSPAERAGLQAGDVILAVNGTDVKNLTLEDVAELLKKEVGEKVTLTV   69 (70)
T ss_pred             CccEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhhCCCCeEEEEE
Confidence            6899998766668999999999999999999999999999999999999999999875 458888876

Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. Heterodimerization through PDZ-PDZ domain interactions adds to the domain's versatility, and PDZ domain-mediated interactions may be modulated dynamically through target phosphorylation. Some PDZ domains play a role in scaffolding supramolecular complexes. PDZ domains are found in diverse signaling proteins in bacteria, archebacteria, and eurkayotes. This CD contains two distinct structural subgroups with either a N- or C-terminal beta-strand forming the peptide-binding groove base. The circular permutation placing the strand on the N-terminus appears to be found in Eumetazoa only, while the C-terminal variant is found in all three kingdoms of life, and seems to co-occur with protease domains. PDZ domains have been named after PSD95(pos

>PF13180 PDZ_2: PDZ domain; PDB: 2L97_A 1Y8T_A 2Z9I_A 1LCY_A 2PZD_B 2P3W_A 1VCW_C 1TE0_B 1SOZ_C 1SOT_C

Probab=99.25  E-value=4e-11  Score=78.16  Aligned_cols=69  Identities=36%  Similarity=0.502  Sum_probs=55.7

Q ss_pred             cccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHH--hCCCCeEEEEEEECC
Q psy7774         102 NLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAHSDT  172 (173)
Q Consensus       102 ~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l--~~~g~~v~l~v~r~~  172 (173)
                      .||+.+.... ..+++|..|.+++||+++||+.||+|++|||..+.+.  .+....+  ...++++.|++.|+.
T Consensus         2 ~lGv~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~~g~~v~l~v~R~g   73 (82)
T PF13180_consen    2 GLGVTVQNLSDTGGVVVVSVIPGSPAAKAGLQPGDIILAINGKPVNSS--EDLVNILSKGKPGDTVTLTVLRDG   73 (82)
T ss_dssp             E-SEEEEECSCSSSEEEEEESTTSHHHHTTS-TTEEEEEETTEESSSH--HHHHHHHHCSSTTSEEEEEEEETT
T ss_pred             EECeEEEEccCCCeEEEEEeCCCCcHHHCCCCCCcEEEEECCEEcCCH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence            5788887655 3689999999999999999999999999999999655  4444444  478999999999974

...

>KOG3553|consensus

Probab=99.18  E-value=2.7e-11  Score=80.13  Aligned_cols=58  Identities=41%  Similarity=0.589  Sum_probs=53.0

Q ss_pred             cccEEEEccC------------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774         102 NLGISLVGGN------------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus       102 ~lG~~l~gg~------------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      .+||.|-||-            +.||||.+|..||||+.+||+.+|.|++|||.++.-++|++|+..+++
T Consensus        36 ~~GFkIGGGIDQDp~k~Pf~ytD~GiYvT~V~eGsPA~~AGLrihDKIlQvNG~DfTMvTHd~Avk~i~k  105 (124)
T KOG3553|consen   36 ILGFKIGGGIDQDPSKNPFSYTDKGIYVTRVSEGSPAEIAGLRIHDKILQVNGWDFTMVTHDQAVKRITK  105 (124)
T ss_pred             EEEEEeccccCCCcccCCCCcCCccEEEEEeccCChhhhhcceecceEEEecCceeEEEEhHHHHHHhhH
Confidence            4689998874            469999999999999999999999999999999999999999988865

>KOG3580|consensus

Probab=99.15  E-value=1e-09  Score=93.00  Aligned_cols=80  Identities=24%  Similarity=0.360  Sum_probs=69.3

Q ss_pred             CCEEEEEEc-cCCCcccEEEEccCCCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          89 EPRFLMIET-RKCSNLGISLVGGNAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        89 ~~~~v~l~~-~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      .|..+.|.| ..++.||+.+.    ..|||..|...+.|++ .+|+.||.|++|||+..++++..++-.++.+..+++.|
T Consensus       198 ~p~kv~LvKsR~nEEyGlrLg----SqIFvKeit~~gLAardgnlqEGDiiLkINGtvteNmSLtDar~LIEkS~GKL~l  273 (1027)
T KOG3580|consen  198 GPIKVLLVKSRANEEYGLRLG----SQIFVKEITRTGLAARDGNLQEGDIILKINGTVTENMSLTDARKLIEKSRGKLQL  273 (1027)
T ss_pred             CcceEEEEeeccchhhccccc----chhhhhhhcccchhhccCCcccccEEEEECcEeeccccchhHHHHHHhccCceEE
Confidence            445666665 34678898774    4699999999999999 56999999999999999999999999999999999999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      .|+|++
T Consensus       274 vVlRD~  279 (1027)
T KOG3580|consen  274 VVLRDS  279 (1027)
T ss_pred             EEEecC
Confidence            999986

>cd00988 PDZ_CTP_protease PDZ domain of C-terminal processing-, tail-specific-, and tricorn proteases, which function in posttranslational protein processing, maturation, and disassembly or degradation, in Bacteria, Archaea, and plant chloroplasts

Probab=99.12  E-value=9.7e-10  Score=71.72  Aligned_cols=70  Identities=24%  Similarity=0.380  Sum_probs=60.3

Q ss_pred             CcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC-CCCeEEEEEEEC
Q psy7774         101 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLAHSD  171 (173)
Q Consensus       101 ~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~-~g~~v~l~v~r~  171 (173)
                      .+||+.+.- ...+++|..|.++++|+++||++||+|++|||..+.++++.+....++. .+..+.|++.|+
T Consensus         2 ~~lG~~~~~-~~~~~~V~~v~~~s~a~~~gl~~GD~I~~vng~~i~~~~~~~~~~~l~~~~~~~i~l~v~r~   72 (85)
T cd00988           2 GGIGLELKY-DDGGLVITSVLPGSPAAKAGIKAGDIIVAIDGEPVDGLSLEDVVKLLRGKAGTKVRLTLKRG   72 (85)
T ss_pred             eEEEEEEEE-cCCeEEEEEecCCCCHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHhcCCCCCEEEEEEEcC
Confidence            478888864 3467999999999999999999999999999999999988888877764 578899999886

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG1892|consensus

Probab=98.97  E-value=2.7e-09  Score=94.31  Aligned_cols=81  Identities=26%  Similarity=0.426  Sum_probs=70.6

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPA  161 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g  161 (173)
                      .+..+|+|.|.  +|+|++|+..+     ..||||+.|++|++|+. ++|..||+++.|||.++-+++.+.|..++.+.|
T Consensus       932 pei~~vtL~Kn--nGmGLSIVAAkGaGq~klGIYvKsVV~GgaAd~DGRL~aGDQLLsVdG~SLiGisQErAA~lmtrtg 1009 (1629)
T KOG1892|consen  932 PEIITVTLKKN--NGMGLSIVAAKGAGQRKLGIYVKSVVEGGAADHDGRLEAGDQLLSVDGHSLIGISQERAARLMTRTG 1009 (1629)
T ss_pred             CceEEEEEecc--CCceEEEEeeccCCccccceEEEEeccCCccccccccccCceeeeecCcccccccHHHHHHHHhccC
Confidence            35667888775  68999986432     56999999999999998 559999999999999999999999999999999


Q ss_pred             CeEEEEEEE
Q psy7774         162 DKVTVLAHS  170 (173)
Q Consensus       162 ~~v~l~v~r  170 (173)
                      ..|.|.|..
T Consensus      1010 ~vV~leVaK 1018 (1629)
T KOG1892|consen 1010 NVVHLEVAK 1018 (1629)
T ss_pred             CeEEEehhh
Confidence            999998854

>KOG3606|consensus

Probab=98.92  E-value=3.6e-09  Score=81.95  Aligned_cols=82  Identities=21%  Similarity=0.381  Sum_probs=70.7

Q ss_pred             CCCEEEEEEccC-CCcccEEEEccC-----------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHH
Q psy7774          88 GEPRFLMIETRK-CSNLGISLVGGN-----------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA  154 (173)
Q Consensus        88 ~~~~~v~l~~~~-~~~lG~~l~gg~-----------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~  154 (173)
                      ...|.|.|.|.+ ..+|||.|+.|.           -+||||+++.|||.|+..| |.+.|.+++|||..+.+++.+++.
T Consensus       157 EtHRRVRL~khG~ekPLGFYIRDG~SVRVtp~GlekvpGIFISRlVpGGLAeSTGLLaVnDEVlEVNGIEVaGKTLDQVT  236 (358)
T KOG3606|consen  157 ETHRRVRLHKHGSEKPLGFYIRDGTSVRVTPHGLEKVPGIFISRLVPGGLAESTGLLAVNDEVLEVNGIEVAGKTLDQVT  236 (358)
T ss_pred             hhhhheehhhcCCCCCceEEEecCceEEeccccccccCceEEEeecCCccccccceeeecceeEEEcCEEeccccHHHHH
Confidence            345778888855 679999998875           3599999999999999977 889999999999999999999999


Q ss_pred             HHHhCCCCeEEEEEE
Q psy7774         155 YELAKPADKVTVLAH  169 (173)
Q Consensus       155 ~~l~~~g~~v~l~v~  169 (173)
                      .++-.....+.++|+
T Consensus       237 DMMvANshNLIiTVk  251 (358)
T KOG3606|consen  237 DMMVANSHNLIITVK  251 (358)
T ss_pred             HHHhhcccceEEEec
Confidence            988777777777775

>cd00991 PDZ_archaeal_metalloprotease PDZ domain of archaeal zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.87  E-value=1.3e-08  Score=65.82  Aligned_cols=59  Identities=32%  Similarity=0.403  Sum_probs=49.0

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeEEEEEEECC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVTVLAHSDT  172 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v~l~v~r~~  172 (173)
                      ..|++|..|.++++|+.+||+.||+|++|||..+.++  .+....+..  .+..+.+++.|+.
T Consensus         9 ~~Gv~V~~V~~~spa~~aGL~~GDiI~~Ing~~v~~~--~d~~~~l~~~~~g~~v~l~v~r~g   69 (79)
T cd00991           9 VAGVVIVGVIVGSPAENAVLHTGDVIYSINGTPITTL--EDFMEALKPTKPGEVITVTVLPST   69 (79)
T ss_pred             CCcEEEEEECCCChHHhcCCCCCCEEEEECCEEcCCH--HHHHHHHhcCCCCCEEEEEEEECC
Confidence            3578999999999999999999999999999999854  455555543  5788999998864

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3571|consensus

Probab=98.86  E-value=1.1e-08  Score=85.07  Aligned_cols=82  Identities=23%  Similarity=0.335  Sum_probs=68.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhC---C
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAK---P  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~---~  160 (173)
                      ...+|+|.-.....||++|+|..    +.||||..|.+||+-+. +++.+||.||+||.+++++++..+||..|+.   .
T Consensus       249 nIITV~LnMe~vnfLGiSivgqsn~rgDggIYVgsImkgGAVA~DGRIe~GDMiLQVNevsFENmSNd~AVrvLREaV~~  328 (626)
T KOG3571|consen  249 NIITVTLNMETVNFLGISIVGQSNARGDGGIYVGSIMKGGAVALDGRIEPGDMILQVNEVSFENMSNDQAVRVLREAVSR  328 (626)
T ss_pred             eEEEEEecccccccceeEeecccCcCCCCceEEeeeccCceeeccCccCccceEEEeeecchhhcCchHHHHHHHHHhcc
Confidence            44566666666667999999843    77999999999999888 5699999999999999999999999999974   4


Q ss_pred             CCeEEEEEEE
Q psy7774         161 ADKVTVLAHS  170 (173)
Q Consensus       161 g~~v~l~v~r  170 (173)
                      ..+++|+|..
T Consensus       329 ~gPi~ltvAk  338 (626)
T KOG3571|consen  329 PGPIKLTVAK  338 (626)
T ss_pred             CCCeEEEEee
Confidence            5667777753

>cd00990 PDZ_glycyl_aminopeptidase PDZ domain associated with archaeal and bacterial M61 glycyl-aminopeptidases

Probab=98.82  E-value=3.6e-08  Score=63.48  Aligned_cols=66  Identities=27%  Similarity=0.304  Sum_probs=50.5

Q ss_pred             ccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       103 lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      +|+.+.. .+.+++|..|.++++|+.+||++||+|++|||..+.+  ..+++..+ ..+..+.+++.|+.
T Consensus         3 ~G~~~~~-~~~~~~V~~V~~~s~a~~aGl~~GD~I~~Ing~~v~~--~~~~l~~~-~~~~~v~l~v~r~g   68 (80)
T cd00990           3 LGLTLDK-EEGLGKVTFVRDDSPADKAGLVAGDELVAVNGWRVDA--LQDRLKEY-QAGDPVELTVFRDD   68 (80)
T ss_pred             ccEEEEc-cCCcEEEEEECCCChHHHhCCCCCCEEEEECCEEhHH--HHHHHHhc-CCCCEEEEEEEECC
Confidence            5776643 2457999999999999999999999999999999876  23332222 46778888888753

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand is presumed to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>KOG3651|consensus

Probab=98.81  E-value=2.4e-08  Score=78.64  Aligned_cols=79  Identities=22%  Similarity=0.329  Sum_probs=69.7

Q ss_pred             CEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      +-.|+|.|...+-+|++|.||.  =+.+||.+|+.++||++ +.++.||.|++|||+++++.+-.++..++.-.-++|.+
T Consensus         5 ~~~v~ltKD~~nliGISIGGGapyCPClYiVQvFD~tPAa~dG~i~~GDEi~avNg~svKGktKveVAkmIQ~~~~eV~I   84 (429)
T KOG3651|consen    5 SETVELTKDEKNLIGISIGGGAPYCPCLYIVQVFDKTPAAKDGRIRCGDEIVAVNGISVKGKTKVEVAKMIQVSLNEVKI   84 (429)
T ss_pred             cCcEEEeeccccceeEEecCCCCcCCeEEEEEeccCCchhccCccccCCeeEEecceeecCccHHHHHHHHHHhccceEE
Confidence            3468999988778899999887  35799999999999999 45999999999999999999999999999888888877


Q ss_pred             EE
Q psy7774         167 LA  168 (173)
Q Consensus       167 ~v  168 (173)
                      .+
T Consensus        85 hy   86 (429)
T KOG3651|consen   85 HY   86 (429)
T ss_pred             Ee
Confidence            64

>KOG3542|consensus

Probab=98.77  E-value=1.5e-08  Score=87.24  Aligned_cols=81  Identities=32%  Similarity=0.534  Sum_probs=69.9

Q ss_pred             CCEEEEEEc-cCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIET-RKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~-~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      .+|.|.|.| .....+-|++.||.  +-+|||..|.||+.|++.||+.||+|++|||++.++++...|..+|+.. ..+.
T Consensus       535 K~RqviLtk~sre~pl~f~L~GGsEkGfgifV~~V~pgskAa~~GlKRgDqilEVNgQnfenis~~KA~eiLrnn-thLt  613 (1283)
T KOG3542|consen  535 KPRQVILTKASREDPLMFRLVGGSEKGFGIFVAEVFPGSKAAREGLKRGDQILEVNGQNFENISAKKAEEILRNN-THLT  613 (1283)
T ss_pred             cceeEEEecccccCCceeEeccCccccceeEEeeecCCchHHHhhhhhhhhhhhccccchhhhhHHHHHHHhcCC-ceEE
Confidence            689999998 44689999999987  5689999999999999999999999999999999999999998877643 4566


Q ss_pred             EEEEE
Q psy7774         166 VLAHS  170 (173)
Q Consensus       166 l~v~r  170 (173)
                      |+|+-
T Consensus       614 ltvKt  618 (1283)
T KOG3542|consen  614 LTVKT  618 (1283)
T ss_pred             EEEec
Confidence            66653

>PLN00049 carboxyl-terminal processing protease; Provisional

Probab=98.74  E-value=8.7e-08  Score=79.62  Aligned_cols=73  Identities=25%  Similarity=0.334  Sum_probs=60.5

Q ss_pred             CCCcccEEEEccCC-----CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEEC
Q psy7774          99 KCSNLGISLVGGNA-----VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSD  171 (173)
Q Consensus        99 ~~~~lG~~l~gg~~-----~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~  171 (173)
                      ...|+|+.+.-...     .+++|..|.+++||+++||+.||+|++|||.++.+++..++...++ ..+..+.|++.|.
T Consensus        83 ~~~GiG~~~~~~~~~~~~~~g~~V~~V~~~SPA~~aGl~~GD~Iv~InG~~v~~~~~~~~~~~l~g~~g~~v~ltv~r~  161 (389)
T PLN00049         83 AVTGVGLEVGYPTGSDGPPAGLVVVAPAPGGPAARAGIRPGDVILAIDGTSTEGLSLYEAADRLQGPEGSSVELTLRRG  161 (389)
T ss_pred             CceEEEEEEEEccCCCCccCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEEC
Confidence            34678888753221     3799999999999999999999999999999999988888877775 4678899998875

>COG0793 Prc Periplasmic protease [Cell envelope biogenesis, outer membrane]

Probab=98.74  E-value=6.3e-08  Score=80.72  Aligned_cols=73  Identities=29%  Similarity=0.413  Sum_probs=65.2

Q ss_pred             CCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEEC
Q psy7774          99 KCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSD  171 (173)
Q Consensus        99 ~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~  171 (173)
                      ...|+|+.+.-....++.|..+.+++||+++||++||+|+.|||.++.+++-.+++..++ ..|..|+|++.|.
T Consensus        98 ~~~GiG~~i~~~~~~~~~V~s~~~~~PA~kagi~~GD~I~~IdG~~~~~~~~~~av~~irG~~Gt~V~L~i~r~  171 (406)
T COG0793          98 EFGGIGIELQMEDIGGVKVVSPIDGSPAAKAGIKPGDVIIKIDGKSVGGVSLDEAVKLIRGKPGTKVTLTILRA  171 (406)
T ss_pred             cccceeEEEEEecCCCcEEEecCCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHhCCCCCCeEEEEEEEc
Confidence            347888888765547899999999999999999999999999999999999999998887 6789999999996

>cd00987 PDZ_serine_protease PDZ domain of tryspin-like serine proteases, such as DegP/HtrA, which are oligomeric proteins involved in heat-shock response, chaperone function, and apoptosis

Probab=98.71  E-value=7.8e-08  Score=63.11  Aligned_cols=58  Identities=40%  Similarity=0.550  Sum_probs=47.6

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      .+++|..|.++++|+++||+.||+|++|||..+.++..  ....+.  ..+..+.+++.|+.
T Consensus        24 ~g~~V~~v~~~s~a~~~gl~~GD~I~~Ing~~i~~~~~--~~~~l~~~~~~~~i~l~v~r~g   83 (90)
T cd00987          24 KGVLVASVDPGSPAAKAGLKPGDVILAVNGKPVKSVAD--LRRALAELKPGDKVTLTVLRGG   83 (90)
T ss_pred             CEEEEEEECCCCHHHHcCCCcCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence            47899999999999999999999999999999986544  333443  34888999998763

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00989 PDZ_metalloprotease PDZ domain of bacterial and plant zinc metalloprotases, presumably membrane-associated or integral membrane proteases, which may be involved in signalling and regulatory mechanisms

Probab=98.69  E-value=2.2e-07  Score=59.49  Aligned_cols=67  Identities=28%  Similarity=0.457  Sum_probs=51.1

Q ss_pred             ccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC-CCCeEEEEEEECC
Q psy7774         103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK-PADKVTVLAHSDT  172 (173)
Q Consensus       103 lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~-~g~~v~l~v~r~~  172 (173)
                      |||... .....++|..|.++++|+.+||+.||+|++|||..+.++  .+....+.. .+..+.+++.|+.
T Consensus         3 ~~~~~g-~~~~~~~V~~v~~~s~a~~~gl~~GD~I~~ing~~i~~~--~~~~~~l~~~~~~~~~l~v~r~~   70 (79)
T cd00989           3 LGFVPG-GPPIEPVIGEVVPGSPAAKAGLKAGDRILAINGQKIKSW--EDLVDAVQENPGKPLTLTVERNG   70 (79)
T ss_pred             eeEecc-CCccCcEEEeECCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHCCCceEEEEEEECC
Confidence            455432 223468899999999999999999999999999999854  555555543 4778899888753

May be responsible for substrate recognition and/or binding, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this subfamily of protease-associated PDZ domains a C-terminal beta-strand forms the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>cd00986 PDZ_LON_protease PDZ domain of ATP-dependent LON serine proteases

Probab=98.66  E-value=1.7e-07  Score=60.32  Aligned_cols=57  Identities=30%  Similarity=0.470  Sum_probs=46.4

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.++++|+. +|+.||+|++|||..+.+  .++....+.  ..+..+.|++.|..
T Consensus         8 ~Gv~V~~V~~~s~A~~-gL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~~~v~l~v~r~g   66 (79)
T cd00986           8 HGVYVTSVVEGMPAAG-KLKAGDHIIAVDGKPFKE--AEELIDYIQSKKEGDTVKLKVKREE   66 (79)
T ss_pred             cCEEEEEECCCCchhh-CCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCCEEEEEEEECC
Confidence            4689999999999987 799999999999999975  445555554  46788999998863

Most PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. In this bacterial subfamily of protease-associated PDZ domains a C-terminal beta-strand is thought to form the peptide-binding groove base, a circular permutation with respect to PDZ domains found in Eumetazoan signaling proteins.

>TIGR00225 prc C-terminal peptidase (prc)

Probab=98.64  E-value=1.9e-07  Score=76.01  Aligned_cols=71  Identities=24%  Similarity=0.332  Sum_probs=59.3

Q ss_pred             CcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEECC
Q psy7774         101 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSDT  172 (173)
Q Consensus       101 ~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~~  172 (173)
                      .++|+.+.-. ..+++|..|.+++||+++||+.||+|++|||..+.+++..++...+. ..+..+.|++.|..
T Consensus        51 ~~lG~~~~~~-~~~~~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~R~g  122 (334)
T TIGR00225        51 EGIGIQVGMD-DGEIVIVSPFEGSPAEKAGIKPGDKIIKINGKSVAGMSLDDAVALIRGKKGTKVSLEILRAG  122 (334)
T ss_pred             EEEEEEEEEE-CCEEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHhccCCCCCEEEEEEEeCC
Confidence            5788887532 34789999999999999999999999999999999987777766665 46889999998863

A C-terminal peptidase with different substrates in different species including processing of D1 protein of the photosystem II reaction center in higher plants and cleavage of a peptide of 11 residues from the precursor form of penicillin-binding protein in E.coli E.coli and H influenza have the most distal branch of the tree and their proteins have an N-terminal 200 amino acids that show no homology to other proteins in the database.

>KOG3552|consensus

Probab=98.61  E-value=7.3e-08  Score=85.18  Aligned_cols=78  Identities=26%  Similarity=0.389  Sum_probs=67.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      +||.|.+.+..  .|||.+..|  .+++|..|.+|||+.- .|++||+|+.|||.+++++.++.++.+++.+...|.|+|
T Consensus        55 ~pr~vq~~r~~--~lGFgfvag--rPviVr~VT~GGps~G-KL~PGDQIl~vN~Epv~daprervIdlvRace~sv~ltV  129 (1298)
T KOG3552|consen   55 EPRQVQLQRNA--SLGFGFVAG--RPVIVRFVTEGGPSIG-KLQPGDQILAVNGEPVKDAPRERVIDLVRACESSVNLTV  129 (1298)
T ss_pred             cchhhhhhccc--cccceeecC--CceEEEEecCCCCccc-cccCCCeEEEecCcccccccHHHHHHHHHHHhhhcceEE
Confidence            58999998866  555555555  7899999999999753 499999999999999999999999999999999999998


Q ss_pred             EEC
Q psy7774         169 HSD  171 (173)
Q Consensus       169 ~r~  171 (173)
                      .+.
T Consensus       130 ~qP  132 (1298)
T KOG3552|consen  130 CQP  132 (1298)
T ss_pred             ecc
Confidence            763

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.57  E-value=1.4e-06  Score=73.24  Aligned_cols=58  Identities=33%  Similarity=0.392  Sum_probs=49.6

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.++++|+++||+.||+|++|||..+.++  .+...+++  +.++.+.|++.|+.
T Consensus       362 ~Gv~V~~V~~~SpA~~aGL~~GDvI~~Ing~~V~s~--~d~~~~l~~~~~g~~v~l~v~R~g  421 (428)
T TIGR02037       362 KGVVVTKVVSGSPAARAGLQPGDVILSVNQQPVSSV--AELRKVLDRAKKGGRVALLILRGG  421 (428)
T ss_pred             CceEEEEeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence            589999999999999999999999999999999765  44555554  46889999999874

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>TIGR02037 degP_htrA_DO periplasmic serine protease, Do/DeqQ family

Probab=98.52  E-value=4.9e-07  Score=76.02  Aligned_cols=60  Identities=33%  Similarity=0.377  Sum_probs=49.6

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .+++|..|.+++||+++||+.||+|++|||..+.++............+..+.|++.|+.
T Consensus       257 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Vng~~i~~~~~~~~~l~~~~~g~~v~l~v~R~g  316 (428)
T TIGR02037       257 RGALVAQVLPGSPAEKAGLKAGDVILSVNGKPISSFADLRRAIGTLKPGKKVTLGILRKG  316 (428)
T ss_pred             CceEEEEccCCCChHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            589999999999999999999999999999999876544333233467889999998863

This family consists of a set proteins various designated DegP, heat shock protein HtrA, and protease DO. The ortholog in Pseudomonas aeruginosa is designated MucD and is found in an operon that controls mucoid phenotype. This family also includes the DegQ (HhoA) paralog in E. coli which can rescue a DegP mutant, but not the smaller DegS paralog, which cannot. Members of this family are located in the periplasm and have separable functions as both protease and chaperone. Members have a trypsin domain and two copies of a PDZ domain. This protein protects bacteria from thermal and other stresses and may be important for the survival of bacterial pathogens.// The chaperone function is dominant at low temperatures, whereas the proteolytic activity is turned on at elevated temperatures.

>KOG0609|consensus

Probab=98.49  E-value=5.9e-07  Score=75.61  Aligned_cols=82  Identities=23%  Similarity=0.312  Sum_probs=72.6

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      ..+.|.+.|..+..+|.++.-.....+||.+|..||.+++.| |+.||.|++|||..+.+..-.++..+++...+.++++
T Consensus       122 ~vriv~i~k~~~eplG~Tik~~e~~~~~vARI~~GG~~~r~glL~~GD~i~EvNGi~v~~~~~~e~q~~l~~~~G~itfk  201 (542)
T KOG0609|consen  122 AVRIVRIVKNTGEPLGATIRVEEDTKVVVARIMHGGMADRQGLLHVGDEILEVNGISVANKSPEELQELLRNSRGSITFK  201 (542)
T ss_pred             eeEEEEEeecCCCccceEEEeccCCccEEeeeccCCcchhccceeeccchheecCeecccCCHHHHHHHHHhCCCcEEEE
Confidence            357788888767999999987665589999999999999966 9999999999999999999999999999888999988


Q ss_pred             EEE
Q psy7774         168 AHS  170 (173)
Q Consensus       168 v~r  170 (173)
                      +.-
T Consensus       202 iiP  204 (542)
T KOG0609|consen  202 IIP  204 (542)
T ss_pred             Ecc
Confidence            743

>PRK11186 carboxy-terminal protease; Provisional

Probab=98.45  E-value=7.7e-07  Score=78.20  Aligned_cols=71  Identities=15%  Similarity=0.172  Sum_probs=58.4

Q ss_pred             CCcccEEEEccCCCCEEEEEecCCCccccc-CCCCCCEEEEECC-----EecCCCCHHHHHHHHh-CCCCeEEEEEEEC
Q psy7774         100 CSNLGISLVGGNAVGIYVHSVQSGSLGYSA-GLRTGDRILEYNG-----TDLRAATAEEAAYELA-KPADKVTVLAHSD  171 (173)
Q Consensus       100 ~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~-gL~~gD~Il~Vng-----~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~  171 (173)
                      ..|+|+.+.- .+..++|..|.+||||+++ ||++||+|++||+     .++.+++..+++.+++ ..|..|.|+|.|.
T Consensus       243 ~~GIGa~l~~-~~~~~~V~~vipGsPA~ka~gLk~GD~IlaVn~~g~~~~dv~g~~~~~vv~lirG~~Gt~V~LtV~r~  320 (667)
T PRK11186        243 LEGIGAVLQM-DDDYTVINSLVAGGPAAKSKKLSVGDKIVGVGQDGKPIVDVIGWRLDDVVALIKGPKGSKVRLEILPA  320 (667)
T ss_pred             eeEEEEEEEE-eCCeEEEEEccCCChHHHhCCCCCCCEEEEECCCCCcccccccCCHHHHHHHhcCCCCCEEEEEEEeC
Confidence            3577887754 2346899999999999996 8999999999994     3566788889998887 6788999999873

>TIGR01713 typeII_sec_gspC general secretion pathway protein C

Probab=98.43  E-value=1.1e-06  Score=69.16  Aligned_cols=71  Identities=25%  Similarity=0.362  Sum_probs=53.7

Q ss_pred             cccEEEE--ccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         102 NLGISLV--GGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       102 ~lG~~l~--gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .+|+...  ++...|+.|..+.++++|+++||+.||+|++|||.++.+......+..-...++.+.|+|.|+.
T Consensus       178 ~lgi~p~~~~g~~~G~~v~~v~~~s~a~~aGLr~GDvIv~ING~~i~~~~~~~~~l~~~~~~~~v~l~V~R~G  250 (259)
T TIGR01713       178 YIRLSPVMKNDKLEGYRLNPGKDPSLFYKSGLQDGDIAVALNGLDLRDPEQAFQALQMLREETNLTLTVERDG  250 (259)
T ss_pred             eEeEEEEEeCCceeEEEEEecCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCeEEEEEEECC
Confidence            3455542  3335689999999999999999999999999999999875443332222356789999999974

This model represents GspC, protein C of the main terminal branch of the general secretion pathway, also called type II secretion. This system transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens.

>PRK10139 serine endoprotease; Provisional

Probab=98.31  E-value=2e-06  Score=72.88  Aligned_cols=58  Identities=26%  Similarity=0.356  Sum_probs=48.5

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHH--hCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l--~~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.++++|+++||+.||+|++|||..+.++..  ....+  ...++.+.|++.|+.
T Consensus       290 ~Gv~V~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~d--l~~~l~~~~~g~~v~l~V~R~G  349 (455)
T PRK10139        290 RGAFVSEVLPNSGSAKAGVKAGDIITSLNGKPLNSFAE--LRSRIATTEPGTKVKLGLLRNG  349 (455)
T ss_pred             CceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence            48999999999999999999999999999999987644  43344  357889999998863

>PRK10898 serine endoprotease; Provisional

Probab=98.29  E-value=2.6e-06  Score=70.01  Aligned_cols=60  Identities=22%  Similarity=0.289  Sum_probs=48.2

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.++++|+++||+.||+|++|||..+.++............++.+.|++.|..
T Consensus       279 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~~l~~~l~~~~~g~~v~l~v~R~g  338 (353)
T PRK10898        279 QGIVVNEVSPDGPAAKAGIQVNDLIISVNNKPAISALETMDQVAEIRPGSVIPVVVMRDD  338 (353)
T ss_pred             CeEEEEEECCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            589999999999999999999999999999999765432222222367889999998863

>PRK10942 serine endoprotease; Provisional

Probab=98.27  E-value=2.9e-06  Score=72.26  Aligned_cols=60  Identities=27%  Similarity=0.305  Sum_probs=49.0

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.++++|+++||+.||+|++|||..+.++............++.+.|++.|+.
T Consensus       311 ~GvlV~~V~~~SpA~~AGL~~GDvIl~InG~~V~s~~dl~~~l~~~~~g~~v~l~v~R~G  370 (473)
T PRK10942        311 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDG  370 (473)
T ss_pred             CceEEEEECCCChHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            489999999999999999999999999999999876544333223456888999998863

>TIGR02038 protease_degS periplasmic serine pepetdase DegS

Probab=98.26  E-value=2.5e-06  Score=69.99  Aligned_cols=58  Identities=29%  Similarity=0.428  Sum_probs=48.4

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.++++|+++||+.||+|++|||..+.++..  ....+.  +.++.+.|++.|+.
T Consensus       278 ~Gv~V~~V~~~spA~~aGL~~GDvI~~Ing~~V~s~~d--l~~~l~~~~~g~~v~l~v~R~g  337 (351)
T TIGR02038       278 RGIVITGVDPNGPAARAGILVRDVILKYDGKDVIGAEE--LMDRIAETRPGSKVMVTVLRQG  337 (351)
T ss_pred             ccceEeecCCCChHHHCCCCCCCEEEEECCEEcCCHHH--HHHHHHhcCCCCEEEEEEEECC
Confidence            48999999999999999999999999999999976543  333443  57889999998863

This family consists of the periplasmic serine protease DegS (HhoB), a shorter paralog of protease DO (HtrA, DegP) and DegQ (HhoA). It is found in E. coli and several other Proteobacteria of the gamma subdivision. It contains a trypsin domain and a single copy of PDZ domain (in contrast to DegP with two copies). A critical role of this DegS is to sense stress in the periplasm and partially degrade an inhibitor of sigma(E).

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.26  E-value=1.7e-06  Score=73.24  Aligned_cols=59  Identities=14%  Similarity=0.085  Sum_probs=49.6

Q ss_pred             CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ..+|..|.++|||+++||+.||+|++|||..+.++............++++.+++.|+.
T Consensus       127 ~~lV~~V~~~SpA~kAGLk~GDvI~~vnG~~V~~~~~l~~~v~~~~~g~~v~v~v~R~g  185 (449)
T PRK10779        127 RPVVGEIAPNSIAAQAQIAPGTELKAVDGIETPDWDAVRLALVSKIGDESTTITVAPFG  185 (449)
T ss_pred             CccccccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhhccCCceEEEEEeCC
Confidence            34799999999999999999999999999999988665554444567788999998864

>KOG3605|consensus

Probab=98.24  E-value=1.9e-06  Score=74.02  Aligned_cols=82  Identities=22%  Similarity=0.302  Sum_probs=66.4

Q ss_pred             CCEEEEEEccCCCcccEEEEc-cC---CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCC--
Q psy7774          89 EPRFLMIETRKCSNLGISLVG-GN---AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA--  161 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~g-g~---~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g--  161 (173)
                      -.+.|.+.|..++.||+-|+- |.   -..++|.....+|||+++| |-.||+|++|||.++-++.......++|...  
T Consensus       645 ~qKEVvv~K~kGEiLGVViVESGWGSmLPTVViAnmm~~GpAarsgkLnIGDQiiaING~SLVGLPLstcQs~Ik~~KnQ  724 (829)
T KOG3605|consen  645 NQKEVVLEKHKGEILGVVIVESGWGSILPTVVIANMMHGGPAARSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQ  724 (829)
T ss_pred             ccceeeeecccCceeeEEEEecCccccchHHHHHhcccCChhhhcCCccccceeEeecCceeccccHHHHHHHHhccccc
Confidence            347899999999999999864 22   3467899999999999966 9999999999999999999988888887543  


Q ss_pred             CeEEEEEEE
Q psy7774         162 DKVTVLAHS  170 (173)
Q Consensus       162 ~~v~l~v~r  170 (173)
                      ..|+|.|.+
T Consensus       725 T~VkltiV~  733 (829)
T KOG3605|consen  725 TAVKLNIVS  733 (829)
T ss_pred             ceEEEEEec
Confidence            345555544

>PRK10139 serine endoprotease; Provisional

Probab=98.18  E-value=6.8e-06  Score=69.66  Aligned_cols=58  Identities=24%  Similarity=0.276  Sum_probs=48.9

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.++++|+++||+.||+|++|||..+.+  +++....+++..+.+.|++.|+.
T Consensus       390 ~Gv~V~~V~~~spA~~aGL~~GD~I~~Ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~g  447 (455)
T PRK10139        390 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGN  447 (455)
T ss_pred             CceEEEEeCCCChHHHcCCCCCCEEEEECCEEcCC--HHHHHHHHHhCCCeEEEEEEECC
Confidence            47899999999999999999999999999999965  45565666555578899998874

>PRK10942 serine endoprotease; Provisional

Probab=98.12  E-value=1.1e-05  Score=68.76  Aligned_cols=58  Identities=21%  Similarity=0.307  Sum_probs=49.7

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .+++|..|.++++|+++||+.||+|++|||..+.++  .+....+...+..+.|+|.|..
T Consensus       408 ~gvvV~~V~~~S~A~~aGL~~GDvIv~VNg~~V~s~--~dl~~~l~~~~~~v~l~V~R~g  465 (473)
T PRK10942        408 KGVVVDNVKPGTPAAQIGLKKGDVIIGANQQPVKNI--AELRKILDSKPSVLALNIQRGD  465 (473)
T ss_pred             CCeEEEEeCCCChHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCeEEEEEEECC
Confidence            479999999999999999999999999999999764  5566666655678899999864

>KOG3605|consensus

Probab=98.12  E-value=2.6e-06  Score=73.17  Aligned_cols=70  Identities=26%  Similarity=0.441  Sum_probs=57.9

Q ss_pred             EEEEEEccC-CCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          91 RFLMIETRK-CSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        91 ~~v~l~~~~-~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      .+|.|.|.+ -.-|||++..|     +|..+..||.|+++|+++|.+|++|||.++-...|+.++.+|..+-++|.
T Consensus       738 ~~V~I~RPd~kyQLGFSVQNG-----iICSLlRGGIAERGGVRVGHRIIEINgQSVVA~pHekIV~lLs~aVGEIh  808 (829)
T KOG3605|consen  738 TTVLIRRPDLRYQLGFSVQNG-----IICSLLRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVQLLSNAVGEIH  808 (829)
T ss_pred             eEEEeecccchhhccceeeCc-----EeehhhcccchhccCceeeeeEEEECCceEEeccHHHHHHHHHHhhhhhh
Confidence            456666543 45789999865     58889999999999999999999999999999999999999976544443

>KOG3938|consensus

Probab=98.10  E-value=6.6e-06  Score=63.88  Aligned_cols=81  Identities=19%  Similarity=0.278  Sum_probs=69.3

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v  164 (173)
                      .+++.|.+.|.. +.||++|...-..-.||..|.+||.-++ ..+++||.|-+|||+++-++.|.++..+|+  ..|...
T Consensus       125 Gq~kEv~v~Kse-dalGlTITDNG~GyAFIKrIkegsvidri~~i~VGd~IEaiNge~ivG~RHYeVArmLKel~rge~f  203 (334)
T KOG3938|consen  125 GQAKEVEVVKSE-DALGLTITDNGAGYAFIKRIKEGSVIDRIEAICVGDHIEAINGESIVGKRHYEVARMLKELPRGETF  203 (334)
T ss_pred             CcceeEEEEecc-cccceEEeeCCcceeeeEeecCCchhhhhhheeHHhHHHhhcCccccchhHHHHHHHHHhcccCCee
Confidence            367889999987 8999999864445579999999999998 569999999999999999999999999998  467777


Q ss_pred             EEEEE
Q psy7774         165 TVLAH  169 (173)
Q Consensus       165 ~l~v~  169 (173)
                      +|.+.
T Consensus       204 tlrLi  208 (334)
T KOG3938|consen  204 TLRLI  208 (334)
T ss_pred             EEEee
Confidence            76653

>TIGR00054 RIP metalloprotease RseP

Probab=98.08  E-value=1.1e-05  Score=67.75  Aligned_cols=58  Identities=22%  Similarity=0.347  Sum_probs=48.5

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~~  172 (173)
                      .++.|..|.++++|+++||++||+|++|||.++.+  .++....++ ..++.+.+++.|+.
T Consensus       203 ~g~vV~~V~~~SpA~~aGL~~GD~Iv~Vng~~V~s--~~dl~~~l~~~~~~~v~l~v~R~g  261 (420)
T TIGR00054       203 IEPVLSDVTPNSPAEKAGLKEGDYIQSINGEKLRS--WTDFVSAVKENPGKSMDIKVERNG  261 (420)
T ss_pred             cCcEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCceEEEEEECC
Confidence            46899999999999999999999999999999975  455555664 46778899998864

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>PRK10779 zinc metallopeptidase RseP; Provisional

Probab=98.04  E-value=1.3e-05  Score=67.96  Aligned_cols=57  Identities=23%  Similarity=0.316  Sum_probs=47.2

Q ss_pred             CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEECC
Q psy7774         114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSDT  172 (173)
Q Consensus       114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~~  172 (173)
                      ++.|..|.++|+|+++||++||+|++|||..+.++  ++....+. ..++.+.+++.|+.
T Consensus       222 ~~vV~~V~~~SpA~~AGL~~GDvIl~Ing~~V~s~--~dl~~~l~~~~~~~v~l~v~R~g  279 (449)
T PRK10779        222 EPVLAEVQPNSAASKAGLQAGDRIVKVDGQPLTQW--QTFVTLVRDNPGKPLALEIERQG  279 (449)
T ss_pred             CcEEEeeCCCCHHHHcCCCCCCEEEEECCEEcCCH--HHHHHHHHhCCCCEEEEEEEECC
Confidence            57899999999999999999999999999999754  44444554 46778999998864

>KOG4371|consensus

Probab=97.98  E-value=2.7e-05  Score=70.14  Aligned_cols=124  Identities=23%  Similarity=0.350  Sum_probs=92.1

Q ss_pred             ccHHHHHHHHhhCCCeEEEEEEeCCCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCccccCCCCC
Q psy7774           4 ATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCK   83 (173)
Q Consensus         4 ~th~~av~~L~~~g~~v~L~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (173)
                      --|++|+.+++..|+.|.|-|+|.+..|.+.-...+                +..                         
T Consensus      1204 ~~~~~~~~~~~~~~~~~~~~~~r~~~~~~d~~~~s~----------------~~~------------------------- 1242 (1332)
T KOG4371|consen 1204 KVHQEVVAMLRGGGDRVVLGVQRPPPAYSDQHHASS----------------TSA------------------------- 1242 (1332)
T ss_pred             hhhHHHHHHHhccCceEEEEeecCCcccccchhhhh----------------hcc-------------------------
Confidence            358999999999999999999999887654211000                000                         


Q ss_pred             CCCCCCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774          84 DERSGEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPA  161 (173)
Q Consensus        84 ~~~~~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g  161 (173)
                         ......+.+.+.+-.++|+.+.... ..++|+..+...++|.. +.++.||+++..+|+++.+.+..+....++-.-
T Consensus      1243 ---~~~l~~~~~~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~a~~~~~~r~g~~~~~~~~~~~~~~~p~~~l~~~~~v~ 1319 (1332)
T KOG4371|consen 1243 ---SAPLISVMLLKKPMATLGLSLAKRTMSDGIFIRNIAQDSAASSEGTLRVGDRLVSLDGEPVDGFTPATILEKLKLVQ 1319 (1332)
T ss_pred             ---cchhhhheeeecccccccccccccCcCCceeeecccccccccccccccccceeeccCCccCCCCChHHHHHHhhhcc
Confidence               0012334555555588999886544 56899999988888877 559999999999999999999888877777777


Q ss_pred             CeEEEEEEEC
Q psy7774         162 DKVTVLAHSD  171 (173)
Q Consensus       162 ~~v~l~v~r~  171 (173)
                      +++.++++|.
T Consensus      1320 ~p~~~~~~~~ 1329 (1332)
T KOG4371|consen 1320 GPVQITVTRE 1329 (1332)
T ss_pred             Cchhheehhh
Confidence            7777777653

>TIGR00054 RIP metalloprotease RseP

Probab=97.74  E-value=5.3e-05  Score=63.70  Aligned_cols=57  Identities=25%  Similarity=0.382  Sum_probs=44.2

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD  171 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~  171 (173)
                      .+.+|..|.++|||+++||+.||+|++|||..+.+......  .+....+++.+.+.|+
T Consensus       128 ~g~~V~~V~~~SpA~~AGL~~GDvI~~vng~~v~~~~dl~~--~ia~~~~~v~~~I~r~  184 (420)
T TIGR00054       128 VGPVIELLDKNSIALEAGIEPGDEILSVNGNKIPGFKDVRQ--QIADIAGEPMVEILAE  184 (420)
T ss_pred             CCceeeccCCCCHHHHcCCCCCCEEEEECCEEcCCHHHHHH--HHHhhcccceEEEEEe
Confidence            57789999999999999999999999999999987654333  3322116777777664

A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.

>KOG0606|consensus

Probab=97.74  E-value=0.00011  Score=66.81  Aligned_cols=78  Identities=31%  Similarity=0.382  Sum_probs=65.5

Q ss_pred             EEEEEccCCCcccEEEE------ccCC---CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCC
Q psy7774          92 FLMIETRKCSNLGISLV------GGNA---VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPAD  162 (173)
Q Consensus        92 ~v~l~~~~~~~lG~~l~------gg~~---~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~  162 (173)
                      .|.+.+.+ .+|||++.      |+.+   .--.|..|.+|++|..+||+.||.|+.|||..+.++.|.+++.++.+.|.
T Consensus       629 pI~i~~~~-~~yGft~~airVy~Gd~d~ytvhh~v~sv~egsPA~~agls~~DlIthvnge~v~gl~H~ev~~Lll~~gn  707 (1205)
T KOG0606|consen  629 PITIHFSG-KKYGFTLRAIRVYMGDKDVYTVHHSVGSVEEGSPAFEAGLSAGDLITHVNGEPVHGLVHTEVMELLLKSGN  707 (1205)
T ss_pred             ceeeeccc-cccCceeeeEEEecCCcccceeeeeeeeecCCCCccccCCCccceeEeccCcccchhhHHHHHHHHHhcCC
Confidence            36777765 89998874      3332   23568899999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEE
Q psy7774         163 KVTVLAHS  170 (173)
Q Consensus       163 ~v~l~v~r  170 (173)
                      .|.+.+.-
T Consensus       708 ~v~~~ttp  715 (1205)
T KOG0606|consen  708 KVTLRTTP  715 (1205)
T ss_pred             eeEEEeec
Confidence            99887654

>PF14685 Tricorn_PDZ: Tricorn protease PDZ domain; PDB: 1N6F_D 1N6D_C 1N6E_C 1K32_A

Probab=97.72  E-value=0.00054  Score=45.11  Aligned_cols=59  Identities=24%  Similarity=0.284  Sum_probs=37.1

Q ss_pred             CCEEEEEecCC--------CcccccC--CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSG--------SLGYSAG--LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~g--------s~A~~~g--L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .+..|.+|.+|        ||....|  ++.||.|++|||+.+.....-.. .+..+++.+|.|+|.+..
T Consensus        12 ~~y~I~~I~~gd~~~~~~~sPL~~pGv~v~~GD~I~aInG~~v~~~~~~~~-lL~~~agk~V~Ltv~~~~   80 (88)
T PF14685_consen   12 GGYRIARIYPGDPWNPNARSPLAQPGVDVREGDYILAINGQPVTADANPYR-LLEGKAGKQVLLTVNRKP   80 (88)
T ss_dssp             TEEEEEEE-BS-TTSSS-B-GGGGGS----TT-EEEEETTEE-BTTB-HHH-HHHTTTTSEEEEEEE-ST
T ss_pred             CEEEEEEEeCCCCCCccccCCccCCCCCCCCCCEEEEECCEECCCCCCHHH-HhcccCCCEEEEEEecCC
Confidence            45667888776        5555544  77999999999999975433222 234578999999998865

>TIGR02860 spore_IV_B stage IV sporulation protein B

Probab=97.67  E-value=0.00028  Score=58.65  Aligned_cols=68  Identities=26%  Similarity=0.442  Sum_probs=50.0

Q ss_pred             CCcccEEEEccCCCCEEEEEec--------CCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEE
Q psy7774         100 CSNLGISLVGGNAVGIYVHSVQ--------SGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHS  170 (173)
Q Consensus       100 ~~~lG~~l~gg~~~~i~V~~v~--------~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r  170 (173)
                      +..+|+.+.   ..||+|....        .++||+.+||+.||.|++|||..+.++  .+....+. ..+..+.|++.|
T Consensus        95 G~~iGI~l~---t~GVlVvg~~~v~~~~g~~~SPAa~AGLq~GDiIvsING~~V~s~--~DL~~iL~~~~g~~V~LtV~R  169 (402)
T TIGR02860        95 GQSIGVKLN---TKGVLVVGFSDIETEKGKIHSPGEEAGIQIGDRILKINGEKIKNM--DDLANLINKAGGEKLTLTIER  169 (402)
T ss_pred             CEEEEEEEe---cCEEEEEEEEcccccCCCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCeEEEEEEE
Confidence            366777664   3467775542        268899999999999999999999765  45555554 347788999988


Q ss_pred             CC
Q psy7774         171 DT  172 (173)
Q Consensus       171 ~~  172 (173)
                      +.
T Consensus       170 ~G  171 (402)
T TIGR02860       170 GG  171 (402)
T ss_pred             CC
Confidence            63

SpoIVB, the stage IV sporulation protein B of endospore-forming bacteria such as Bacillus subtilis, is a serine proteinase, expressed in the spore (rather than mother cell) compartment, that participates in a proteolytic activation cascade for Sigma-K. It appears to be universal among endospore-forming bacteria and occurs nowhere else.

>KOG3129|consensus

Probab=97.62  E-value=0.00022  Score=53.71  Aligned_cols=59  Identities=24%  Similarity=0.231  Sum_probs=44.5

Q ss_pred             CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHH--hCCCCeEEEEEEECC
Q psy7774         114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAHSDT  172 (173)
Q Consensus       114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l--~~~g~~v~l~v~r~~  172 (173)
                      =++|..|.++|||+.+||+.||.|+++..+.-.+....+-+...  ...+..+.++|.|..
T Consensus       140 Fa~V~sV~~~SPA~~aGl~~gD~il~fGnV~sgn~~~lq~i~~~v~~~e~~~v~v~v~R~g  200 (231)
T KOG3129|consen  140 FAVVDSVVPGSPADEAGLCVGDEILKFGNVHSGNFLPLQNIAAVVQSNEDQIVSVTVIREG  200 (231)
T ss_pred             eEEEeecCCCChhhhhCcccCceEEEecccccccchhHHHHHHHHHhccCcceeEEEecCC
Confidence            36899999999999999999999999988776665533322233  356777788887754

>PF04495 GRASP55_65: GRASP55/65 PDZ-like domain ; InterPro: IPR007583 GRASP55 (Golgi reassembly stacking protein of 55 kDa) and GRASP65 (a 65 kDa) protein are highly homologous

Probab=97.59  E-value=0.00064  Score=48.57  Aligned_cols=80  Identities=23%  Similarity=0.136  Sum_probs=50.8

Q ss_pred             CCEEEEEEcc----CCCcccEEEEccC-----CCCEEEEEecCCCcccccCCCC-CCEEEEECCEecCCCCHHHHHHHH-
Q psy7774          89 EPRFLMIETR----KCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAGLRT-GDRILEYNGTDLRAATAEEAAYEL-  157 (173)
Q Consensus        89 ~~~~v~l~~~----~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~gL~~-gD~Il~Vng~~~~~~~~~~~~~~l-  157 (173)
                      ..|.|.+...    ..+.||+++.-..     ..+.-|..|.|+|||+.+||++ .|.|+.+++..+.+....  ...+ 
T Consensus        10 ~~R~v~i~ps~~w~~~g~LG~sv~~~~~~~~~~~~~~Vl~V~p~SPA~~AGL~p~~DyIig~~~~~l~~~~~l--~~~v~   87 (138)
T PF04495_consen   10 TTREVSIVPSKKWGGQGLLGISVRFESFEGAEEEGWHVLRVAPNSPAAKAGLEPFFDYIIGIDGGLLDDEDDL--FELVE   87 (138)
T ss_dssp             SEEEEEE---SSSSSSSSS-EEEEEEE-TTGCCCEEEEEEE-TTSHHHHTT--TTTEEEEEETTCE--STCHH--HHHHH
T ss_pred             eEEEEEEccCcccCCCCCCcEEEEEecccccccceEEEeEecCCCHHHHCCccccccEEEEccceecCCHHHH--HHHHH
Confidence            4566766531    2367899886422     4578899999999999999998 699999999888865443  3334 


Q ss_pred             hCCCCeEEEEEEE
Q psy7774         158 AKPADKVTVLAHS  170 (173)
Q Consensus       158 ~~~g~~v~l~v~r  170 (173)
                      ...+.++.|.|-.
T Consensus        88 ~~~~~~l~L~Vyn  100 (138)
T PF04495_consen   88 ANENKPLQLYVYN  100 (138)
T ss_dssp             HTTTS-EEEEEEE
T ss_pred             HcCCCcEEEEEEE
Confidence            4667788887743

GRASP55 is a component of the Golgi stacking machinery. GRASP65, an N-ethylmaleimide-sensitive membrane protein required for the stacking of Golgi cisternae in a cell-free system [].; PDB: 3RLE_A 4EDJ_A.

>COG0265 DegQ Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.00037  Score=57.03  Aligned_cols=59  Identities=29%  Similarity=0.370  Sum_probs=50.1

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD  171 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~  171 (173)
                      .|++|..+.+++||+++|++.||.|+++||..+.+.............|..+.+.+.|.
T Consensus       270 ~G~~V~~v~~~spa~~agi~~Gdii~~vng~~v~~~~~l~~~v~~~~~g~~v~~~~~r~  328 (347)
T COG0265         270 AGAVVLGVLPGSPAAKAGIKAGDIITAVNGKPVASLSDLVAAVASNRPGDEVALKLLRG  328 (347)
T ss_pred             CceEEEecCCCChHHHcCCCCCCEEEEECCEEccCHHHHHHHHhccCCCCEEEEEEEEC
Confidence            36899999999999999999999999999999987765555444445789999999886

>PRK09681 putative type II secretion protein GspC; Provisional

Probab=97.19  E-value=0.0011  Score=52.51  Aligned_cols=46  Identities=17%  Similarity=0.232  Sum_probs=34.5

Q ss_pred             cccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         127 YSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       127 ~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ..+||+.||.+++|||.++.+..+...+..--.....+.|+|+|+.
T Consensus       221 ~~~GLq~GDva~sING~dL~D~~qa~~l~~~L~~~tei~ltVeRdG  266 (276)
T PRK09681        221 DASGFKEGDIAIALNQQDFTDPRAMIALMRQLPSMDSIQLTVLRKG  266 (276)
T ss_pred             HHcCCCCCCEEEEeCCeeCCCHHHHHHHHHHhccCCeEEEEEEECC
Confidence            3489999999999999999876543332222356788999999974

>TIGR03279 cyano_FeS_chp putative FeS-containing Cyanobacterial-specific oxidoreductase

Probab=97.10  E-value=0.0003  Score=58.93  Aligned_cols=54  Identities=17%  Similarity=0.263  Sum_probs=39.8

Q ss_pred             EEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHH------H-H-hCCCCeEEEEEEE
Q psy7774         117 VHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAY------E-L-AKPADKVTVLAHS  170 (173)
Q Consensus       117 V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~------~-l-~~~g~~v~l~v~r  170 (173)
                      |..|.++|+|+.+||++||+|++|||..+.++..-....      + + ++.|....+.+..
T Consensus         2 I~~V~pgSpAe~AGLe~GD~IlsING~~V~Dw~D~~~~l~~e~l~L~V~~rdGe~~~l~Ie~   63 (433)
T TIGR03279         2 ISAVLPGSIAEELGFEPGDALVSINGVAPRDLIDYQFLCADEELELEVLDANGESHQIEIEK   63 (433)
T ss_pred             cCCcCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHhcCCcEEEEEEcCCCeEEEEEEec
Confidence            567899999999999999999999999998865543221      1 1 2445555666654

Members of this protein family are predicted FeS-containing oxidoreductases of unknown function, apparently restricted to and universal across the Cyanobacteria. The high trusted cutoff score for this model, 700 bits, excludes homologs from other lineages. This exclusion seems justified because a significant number of sequence positions are simultaneously unique to and invariant across the Cyanobacteria, suggesting a specialized, conserved function, perhaps related to photosynthesis. A distantly related protein family, TIGR03278, in universal in and restricted to archaeal methanogens, and may be linked to methanogenesis.

>KOG3549|consensus

Probab=97.05  E-value=0.0011  Score=53.66  Aligned_cols=31  Identities=16%  Similarity=0.415  Sum_probs=25.9

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEE--eCCCcc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQ--YSPDKY   31 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~--r~~~~~   31 (173)
                      +++++|||||++||++|+.|+|+|.  |....|
T Consensus       113 v~~c~HeevV~iLRNAGdeVtlTV~~lr~ApaF  145 (505)
T KOG3549|consen  113 VTACPHEEVVNILRNAGDEVTLTVKHLRAAPAF  145 (505)
T ss_pred             eecCChHHHHHHHHhcCCEEEEEeHhhhcCcHH
Confidence            3689999999999999999999995  444443

>COG3975 Predicted protease with the C-terminal PDZ domain [General function prediction only]

Probab=96.99  E-value=0.0011  Score=56.29  Aligned_cols=42  Identities=31%  Similarity=0.467  Sum_probs=36.3

Q ss_pred             CcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCE
Q psy7774         101 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT  143 (173)
Q Consensus       101 ~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~  143 (173)
                      ..||+.+.. +.....|..|.++|||+.+||.+||.|++|||.
T Consensus       451 ~~LGl~v~~-~~g~~~i~~V~~~gPA~~AGl~~Gd~ivai~G~  492 (558)
T COG3975         451 YYLGLKVKS-EGGHEKITFVFPGGPAYKAGLSPGDKIVAINGI  492 (558)
T ss_pred             cccceEecc-cCCeeEEEecCCCChhHhccCCCccEEEEEcCc
Confidence            477877652 345789999999999999999999999999998

>KOG3532|consensus

Probab=96.94  E-value=0.0029  Score=55.43  Aligned_cols=74  Identities=22%  Similarity=0.312  Sum_probs=56.5

Q ss_pred             EEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEE
Q psy7774          95 IETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHS  170 (173)
Q Consensus        95 l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r  170 (173)
                      +.+..+..+|+.+.......|-|..|.++++|+++.+++||.+++|||+++.  +..++...++.....+...+.|
T Consensus       380 ~~~~~s~~ig~vf~~~~~~~v~v~tv~~ns~a~k~~~~~gdvlvai~~~pi~--s~~q~~~~~~s~~~~~~~l~~~  453 (1051)
T KOG3532|consen  380 SRYDVSSPIGLVFDKNTNRAVKVCTVEDNSLADKAAFKPGDVLVAINNVPIR--SERQATRFLQSTTGDLTVLVER  453 (1051)
T ss_pred             ccccccCceeEEEecCCceEEEEEEecCCChhhHhcCCCcceEEEecCccch--hHHHHHHHHHhcccceEEEEee
Confidence            3344457788887765566788999999999999999999999999999996  4566777777655555544433

>COG3480 SdrC Predicted secreted protein containing a PDZ domain [Signal transduction mechanisms]

Probab=96.93  E-value=0.0031  Score=50.54  Aligned_cols=57  Identities=30%  Similarity=0.415  Sum_probs=46.0

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHH--hCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l--~~~g~~v~l~v~r~~  172 (173)
                      .|||+..+..++++.. -|+.||.|++|||..+...  ++....+  ++.|++|++.+.|..
T Consensus       130 ~gvyv~~v~~~~~~~g-kl~~gD~i~avdg~~f~s~--~e~i~~v~~~k~Gd~VtI~~~r~~  188 (342)
T COG3480         130 AGVYVLSVIDNSPFKG-KLEAGDTIIAVDGEPFTSS--DELIDYVSSKKPGDEVTIDYERHN  188 (342)
T ss_pred             eeEEEEEccCCcchhc-eeccCCeEEeeCCeecCCH--HHHHHHHhccCCCCeEEEEEEecc
Confidence            3799999999999744 4999999999999999765  4444444  578999999999743

>KOG3551|consensus

Probab=96.84  E-value=0.0033  Score=51.64  Aligned_cols=32  Identities=28%  Similarity=0.500  Sum_probs=27.0

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEe--CCCccC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQY--SPDKYH   32 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r--~~~~~~   32 (173)
                      |+++||+|||++||.+|..|.|.|.|  +...|.
T Consensus       143 L~~AtHdeAVqaLKraGkeV~levKy~REvtPy~  176 (506)
T KOG3551|consen  143 LRDATHDEAVQALKRAGKEVLLEVKYMREVTPYF  176 (506)
T ss_pred             hhhcchHHHHHHHHhhCceeeeeeeeehhcchhh
Confidence            68899999999999999999999974  444443

>KOG1320|consensus

Probab=96.78  E-value=0.0049  Score=52.25  Aligned_cols=58  Identities=28%  Similarity=0.391  Sum_probs=45.3

Q ss_pred             CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774         114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD  171 (173)
Q Consensus       114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~  171 (173)
                      +++|++|.+++++..+++..||+|++|||..++++.|..-.......+++|.+..+|.
T Consensus       399 ~v~is~Vlp~~~~~~~~~~~g~~V~~vng~~V~n~~~l~~~i~~~~~~~~v~vl~~~~  456 (473)
T KOG1320|consen  399 LVLVSQVLPGSINGGYGLKPGDQVVKVNGKPVKNLKHLYELIEECSTEDKVAVLDRRS  456 (473)
T ss_pred             EEEEEEeccCCCcccccccCCCEEEEECCEEeechHHHHHHHHhcCcCceEEEEEecC
Confidence            6899999999999999999999999999999999877544333333345666665553

>COG3031 PulC Type II secretory pathway, component PulC [Intracellular trafficking and secretion]

Probab=96.58  E-value=0.015  Score=45.00  Aligned_cols=70  Identities=23%  Similarity=0.284  Sum_probs=47.1

Q ss_pred             CEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVL  167 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~  167 (173)
                      .+...+.+++ +-+|+.+.-|+          +++.-+..||+.||..+++|+.++.+-  +++..+++  ..-..+.|+
T Consensus       195 Irltpv~r~e-ki~Gyr~~pgk----------d~slF~~sglq~GDIavaiNnldltdp--~~m~~llq~l~~m~s~qlT  261 (275)
T COG3031         195 IRLTPVIRNE-KIEGYRFEPGK----------DGSLFYKSGLQRGDIAVAINNLDLTDP--EDMFRLLQMLRNMPSLQLT  261 (275)
T ss_pred             eEeeeEeeCC-ceEEEEecCCC----------CcchhhhhcCCCcceEEEecCcccCCH--HHHHHHHHhhhcCcceEEE
Confidence            3444454544 67788776655          345556689999999999999887642  33333443  455678888


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      |.|+.
T Consensus       262 v~R~G  266 (275)
T COG3031         262 VIRRG  266 (275)
T ss_pred             EEecC
Confidence            88863

>KOG1738|consensus

Probab=96.42  E-value=0.0061  Score=52.82  Aligned_cols=70  Identities=11%  Similarity=0.093  Sum_probs=58.7

Q ss_pred             CCCcccEEEEccCCCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          99 KCSNLGISLVGGNAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        99 ~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      ++.++|+.|....+...+|+.+.++++|+. .-+..||.++.||+..+.++.+.-.+..+.....-|.+++
T Consensus       211 p~eglg~~I~Ssydg~h~~s~~~e~Spad~~~kI~dgdEv~qiN~qtvVgwqlk~vV~sL~~~~sgi~l~l  281 (638)
T KOG1738|consen  211 PSEGLGLYIDSSYDGPHVTSKIFEQSPADYRQKILDGDEVLQINEQTVVGWQLKVVVSSLRETPAGIELTL  281 (638)
T ss_pred             cccCCceEEeeecCCceeccccccCChHHHhhcccCccceeeecccccccchhHhHHhhcccCcccceeee
Confidence            358999999877788899999999999998 4599999999999999999999999888876544444444

>KOG1421|consensus

Probab=95.69  E-value=0.029  Score=49.42  Aligned_cols=56  Identities=20%  Similarity=0.163  Sum_probs=43.9

Q ss_pred             CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHH-hCCCCeEEEEEEECC
Q psy7774         114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL-AKPADKVTVLAHSDT  172 (173)
Q Consensus       114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l-~~~g~~v~l~v~r~~  172 (173)
                      -+.|..|.++|+|++. |++||.+++||+..+.++  +++.+.+ +..|+.+.|+++|..
T Consensus       304 mLvV~~vL~~gpa~k~-Le~GDillavN~t~l~df--~~l~~iLDegvgk~l~LtI~Rgg  360 (955)
T KOG1421|consen  304 MLVVETVLPEGPAEKK-LEPGDILLAVNSTCLNDF--EALEQILDEGVGKNLELTIQRGG  360 (955)
T ss_pred             eEEEEEeccCCchhhc-cCCCcEEEEEcceehHHH--HHHHHHHhhccCceEEEEEEeCC
Confidence            4678999999999885 999999999998777543  3333344 457899999999864

>KOG4407|consensus

Probab=94.20  E-value=0.05  Score=51.09  Aligned_cols=61  Identities=20%  Similarity=0.350  Sum_probs=46.5

Q ss_pred             CCEEEEEEccCCCcccEEEEc--------------------cC-------CCCEEEEEecCCCcccccCCCCCCEEEEEC
Q psy7774          89 EPRFLMIETRKCSNLGISLVG--------------------GN-------AVGIYVHSVQSGSLGYSAGLRTGDRILEYN  141 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~g--------------------g~-------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vn  141 (173)
                      .+..+.+.|+++.||||+|+-                    |.       ...+|+.++..++++..+|+..+|.|..|+
T Consensus        45 ~~~~~V~~rR~nQGFGFTLRHFIaYPPEd~~a~Ss~sG~~~Gsa~~~~~~~~s~~~~Q~~s~~~~~nsG~~s~~~v~~it  124 (1973)
T KOG4407|consen   45 QPKLIVIRRRPNQGFGFTLRHFIAYPPEDDQASSSASGLVSGSATAATAASVSTNWPQEASSAAGSNSGSSSSVGVAGIT  124 (1973)
T ss_pred             CCceEEEEecCCCCcceeeeeeeecCchhhhhhhhhccccccchhcccccccccccchhcccCcccccCcccccceeeec
Confidence            344455555566999999864                    11       115678888888888889999999999999


Q ss_pred             CEecCCCC
Q psy7774         142 GTDLRAAT  149 (173)
Q Consensus       142 g~~~~~~~  149 (173)
                      |..+.+.+
T Consensus       125 G~e~~~~T  132 (1973)
T KOG4407|consen  125 GLEPTSPT  132 (1973)
T ss_pred             ccccCCCc
Confidence            99887766

>KOG4371|consensus

Probab=92.85  E-value=0.2  Score=46.27  Aligned_cols=78  Identities=17%  Similarity=0.267  Sum_probs=59.6

Q ss_pred             EEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774          93 LMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus        93 v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      +.+.+.+ ..||..+..- ...+.++.....+.-..-.|+.||.++.+||+-+++.-|.+++..++..++.|.|-|+|..
T Consensus      1151 ~~~~r~~-~~l~~~~a~~-~~~~~~~~~~~~~~~~~pd~~~g~~l~~~n~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 1228 (1332)
T KOG4371|consen 1151 VELDRNE-GSLGVQIASL-SGRVCIKQLTSEPAISHPDIRVGDVLLYVNGIAVEGKVHQEVVAMLRGGGDRVVLGVQRPP 1228 (1332)
T ss_pred             ccCCCCC-CCCCceeccC-ccceehhhcccCCCCCCCCcchhhhhhhccceeeechhhHHHHHHHhccCceEEEEeecCC
Confidence            4444555 6888877632 2345566655544444456999999999999999999999999999999999999999864

>COG0750 Predicted membrane-associated Zn-dependent proteases 1 [Cell envelope biogenesis, outer membrane]

Probab=90.75  E-value=0.81  Score=37.63  Aligned_cols=54  Identities=30%  Similarity=0.351  Sum_probs=39.1

Q ss_pred             EEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe---EEEEEEE
Q psy7774         116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK---VTVLAHS  170 (173)
Q Consensus       116 ~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~---v~l~v~r  170 (173)
                      ++..+..+++|..++++.||+++++|+..+..+..-..... ...+..   +.+.+.|
T Consensus       132 ~~~~v~~~s~a~~a~l~~Gd~iv~~~~~~i~~~~~~~~~~~-~~~~~~~~~~~i~~~~  188 (375)
T COG0750         132 VVGEVAPKSAAALAGLRPGDRIVAVDGEKVASWDDVRRLLV-AAAGDVFNLLTILVIR  188 (375)
T ss_pred             eeeecCCCCHHHHcCCCCCCEEEeECCEEccCHHHHHHHHH-hccCCcccceEEEEEe
Confidence            34478899999999999999999999999987654333222 233333   6676666

>KOG3834|consensus

Probab=90.29  E-value=0.52  Score=39.57  Aligned_cols=58  Identities=28%  Similarity=0.256  Sum_probs=42.3

Q ss_pred             CCCCEEEEEecCCCcccccCCCC-CCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEE
Q psy7774         111 NAVGIYVHSVQSGSLGYSAGLRT-GDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAH  169 (173)
Q Consensus       111 ~~~~i~V~~v~~gs~A~~~gL~~-gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~  169 (173)
                      ...+.-|.+|..+++|.++||.. -|.|++|||..+... .+....+++..-..|+|++-
T Consensus        13 gteg~hvlkVqedSpa~~aglepffdFIvSI~g~rL~~d-nd~Lk~llk~~sekVkltv~   71 (462)
T KOG3834|consen   13 GTEGYHVLKVQEDSPAHKAGLEPFFDFIVSINGIRLNKD-NDTLKALLKANSEKVKLTVY   71 (462)
T ss_pred             CceeEEEEEeecCChHHhcCcchhhhhhheeCcccccCc-hHHHHHHHHhcccceEEEEE
Confidence            33455677899999999999665 789999999998643 34444566655555777764

>PF12812 PDZ_1: PDZ-like domain

Probab=89.78  E-value=0.74  Score=29.46  Aligned_cols=36  Identities=25%  Similarity=0.307  Sum_probs=28.9

Q ss_pred             EEEEEecCCCcccccCCCCCCEEEEECCEecCCCCH
Q psy7774         115 IYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATA  150 (173)
Q Consensus       115 i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~  150 (173)
                      +++.....|+++...++..|-.|.+||+.++.++..
T Consensus        32 gv~v~~~~g~~~~~~~i~~g~iI~~Vn~kpt~~Ld~   67 (78)
T PF12812_consen   32 GVYVAVSGGSLAFAGGISKGFIITSVNGKPTPDLDD   67 (78)
T ss_pred             EEEEEecCCChhhhCCCCCCeEEEeECCcCCcCHHH
Confidence            455556778887777799999999999999987643

>PF11874 DUF3394: Domain of unknown function (DUF3394); InterPro: IPR021814 This domain is functionally uncharacterised

Probab=88.66  E-value=7  Score=29.25  Aligned_cols=38  Identities=26%  Similarity=0.311  Sum_probs=30.8

Q ss_pred             ccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEEC
Q psy7774         103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYN  141 (173)
Q Consensus       103 lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vn  141 (173)
                      .|+.+.. .+..+.|..|..||+|+++|+..|++|.+|-
T Consensus       113 ~GL~l~~-e~~~~~Vd~v~fgS~A~~~g~d~d~~I~~v~  150 (183)
T PF11874_consen  113 AGLTLME-EGGKVIVDEVEFGSPAEKAGIDFDWEITEVE  150 (183)
T ss_pred             CCCEEEe-eCCEEEEEecCCCCHHHHcCCCCCcEEEEEE
Confidence            4666553 3456899999999999999999999998873

This domain is found in bacteria. This presumed domain is about 190 amino acids in length. This domain is found associated with PF06808 from PFAM.

>KOG3834|consensus

Probab=87.48  E-value=7.4  Score=32.90  Aligned_cols=77  Identities=22%  Similarity=0.167  Sum_probs=46.1

Q ss_pred             CCEEEEEEccCCCc---ccEEEEccC-----CCCEEEEEecCCCcccccCCC-CCCEEEEE-CCEecCCCCHHHHHHHH-
Q psy7774          89 EPRFLMIETRKCSN---LGISLVGGN-----AVGIYVHSVQSGSLGYSAGLR-TGDRILEY-NGTDLRAATAEEAAYEL-  157 (173)
Q Consensus        89 ~~~~v~l~~~~~~~---lG~~l~gg~-----~~~i~V~~v~~gs~A~~~gL~-~gD~Il~V-ng~~~~~~~~~~~~~~l-  157 (173)
                      +.|.+.|......+   ||++|+=-.     ..--=|-.|.++++|+++||+ -+|-|+-+ +.+.-   ..++...++ 
T Consensus        77 ~~R~v~I~ps~~wggqllGvsvrFcsf~~A~~~vwHvl~V~p~SPaalAgl~~~~DYivG~~~~~~~---~~eDl~~lIe  153 (462)
T KOG3834|consen   77 EVRIVEIVPSNNWGGQLLGVSVRFCSFDGAVESVWHVLSVEPNSPAALAGLRPYTDYIVGIWDAVMH---EEEDLFTLIE  153 (462)
T ss_pred             eeEEEEecccccccccccceEEEeccCccchhheeeeeecCCCCHHHhcccccccceEecchhhhcc---chHHHHHHHH
Confidence            34666666544334   777764222     222346678899999999988 68988877 44332   234444444 


Q ss_pred             hCCCCeEEEEE
Q psy7774         158 AKPADKVTVLA  168 (173)
Q Consensus       158 ~~~g~~v~l~v  168 (173)
                      .+.++.+.|.|
T Consensus       154 she~kpLklyV  164 (462)
T KOG3834|consen  154 SHEGKPLKLYV  164 (462)
T ss_pred             hccCCCcceeE
Confidence            35566666554

>KOG3550|consensus

Probab=87.05  E-value=0.68  Score=33.49  Aligned_cols=34  Identities=24%  Similarity=0.468  Sum_probs=28.3

Q ss_pred             cccHHHHHHHHhhCCCeEEEEEEeCCCccCCCcC
Q psy7774           3 SATYQLAASVLRQCGNSITMLVQYSPDKYHELEG   36 (173)
Q Consensus         3 ~~th~~av~~L~~~g~~v~L~V~r~~~~~~~~~~   36 (173)
                      +--|+.||++||.+-..|.|+|.|-|....+++.
T Consensus       150 ge~hekavellkaa~gsvklvvrytpkvleeme~  183 (207)
T KOG3550|consen  150 GEHHEKAVELLKAAVGSVKLVVRYTPKVLEEMEA  183 (207)
T ss_pred             chhhHHHHHHHHHhcCcEEEEEecChHHHHHHHH
Confidence            3469999999999999999999998887655543

>KOG4407|consensus

Probab=86.06  E-value=0.33  Score=45.96  Aligned_cols=55  Identities=22%  Similarity=0.309  Sum_probs=47.8

Q ss_pred             CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774         114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus       114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      .+||..|.++++|..+-|+.||+++.||...+.++...+++..+++.--.+.+.|
T Consensus       144 T~~~~eV~~n~~~~~a~LQ~~~~V~~v~~q~~A~i~~s~~~S~~~qt~~~~~~~~  198 (1973)
T KOG4407|consen  144 TIFIKEVQANGPAHYANLQTGDRVLMVNNQPIAGIAYSTIVSMIKQTPAVLTLHV  198 (1973)
T ss_pred             hhhhhhhccCChhHHHhhhccceeEEeecCcccchhhhhhhhhhccCCCCCCcee
Confidence            6899999999999999999999999999999999999999988887544444433

>KOG0708|consensus

Probab=84.86  E-value=1.1  Score=36.96  Aligned_cols=32  Identities=38%  Similarity=0.604  Sum_probs=28.7

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCccC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYH   32 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~   32 (173)
                      +++++|+++.+.|+.+|+.|++.+++.++.|.
T Consensus         8 ~~~~~~~~~a~~l~~sg~~~~i~~q~~~e~~~   39 (359)
T KOG0708|consen    8 GRNATHEDAAAALKTSGDSVYIRAQYRPEEYD   39 (359)
T ss_pred             cccchHHHHHHHhhcCCCceEEEEEechhhhc
Confidence            47899999999999999999999998887654

>KOG0792|consensus

Probab=81.91  E-value=3.5  Score=38.53  Aligned_cols=61  Identities=23%  Similarity=0.367  Sum_probs=50.9

Q ss_pred             CCcccEEEEccC-------CCCEEEEEec-------------CCCccccc--CCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy7774         100 CSNLGISLVGGN-------AVGIYVHSVQ-------------SGSLGYSA--GLRTGDRILEYNGTDLRAATAEEAAYEL  157 (173)
Q Consensus       100 ~~~lG~~l~gg~-------~~~i~V~~v~-------------~gs~A~~~--gL~~gD~Il~Vng~~~~~~~~~~~~~~l  157 (173)
                      .+.+||.+.|+.       ..++.++++.             |++.|+..  .+..||+.+.|||.++....|+..+..+
T Consensus       715 ~g~~g~~~~g~~dq~~~~~~~p~a~sRv~~~~p~~~~~~~~~p~s~~d~~~P~~~e~dq~~~ingr~~~~~~~~~~vs~i  794 (1144)
T KOG0792|consen  715 PGRFGFNLKGGLDQLQNLLNEPVAVSRVAGPGPLKMNGKLSEPESTADDCTPRLNEGDQVTSINGRDVSESEHDQVVSLI  794 (1144)
T ss_pred             CccccccccchhhhhhccccccHHHHhhcccccchhcccccCCCCCccccccCCCcccceeeecccccccccccchHHHH
Confidence            467999999875       2467788888             88888773  4899999999999999999999999888


Q ss_pred             hCC
Q psy7774         158 AKP  160 (173)
Q Consensus       158 ~~~  160 (173)
                      +.+
T Consensus       795 rs~  797 (1144)
T KOG0792|consen  795 RSP  797 (1144)
T ss_pred             hhh
Confidence            754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
1uit_A	117	Solution Structure Of Rsgi Ruh-006, The Third Pdz D		8e-10
3tsw_A	391	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		9e-06
3tsw_B	194	Crystal Structure Of The Pdz3-Sh3-Guk Core Module O		2e-05
3shw_A	468	Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule		2e-05
3tsv_A	124	Crystal Structure Of The Third Pdz Domain Of The Hu		2e-05
3shu_A	95	Crystal Structure Of Zo-1 Pdz3 Length = 95		5e-05
2ehr_A	117	Solution Structure Of The Sixth Pdz Domain Of Human		7e-05
1uez_A	101	Solution Structure Of The First Pdz Domain Of Human		8e-05
1tp3_A	119	Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv		9e-05
2xkx_A	721	Single Particle Analysis Of Psd-95 In Negative Stai		1e-04
1be9_A	119	The Third Pdz Domain From The Synaptic Protein Psd-		1e-04
3jxt_A	104	Crystal Structure Of The Third Pdz Domain Of Sap-10		1e-04
3k82_A	98	Crystal Structure Of The Third Pdz Domain Of Psd-95		1e-04
2fcf_A	103	The Crystal Structure Of The 7th Pdz Domain Of Mpdz		2e-04
3i4w_A	104	Crystal Structure Of The Third Pdz Domain Of Psd-95		2e-04
2iwq_A	123	7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz		2e-04
1um7_A	113	Solution Structure Of The Third Pdz Domain Of Synap		2e-04
2dm8_A	116	Solution Structure Of The Eighth Pdz Domain Of Huma		4e-04
1pdr_A	99	Crystal Structure Of The Third Pdz Domain From The		6e-04

>pdb|1UIT|A Chain A, Solution Structure Of Rsgi Ruh-006, The Third Pdz Domain Of Hdlg5 (Kiaa0583) Protein [homo Sapiens] Length = 117

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 89  EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRXX 148
           EPR + ++ +    LGIS+V G   GIYV  V  GS+ + AGL  GD++LE+NG +LR  
Sbjct: 19  EPRHVKVQ-KGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSA 77
Query: 149 XXXXXXXXXXKPADKVTVLAH 169
                     +  D +T+LA 
Sbjct: 78  TEQQARLIIGQQCDTITILAQ 98

>pdb|3TSW|A Chain A, Crystal Structure Of The Pdz3-Sh3-Guk Core Module Of Human Zo-1 Length = 391

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 90  PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
           P   +++ RK  ++G+ L GGN VGI+V  V   S     GL  GD+IL  N  D 
Sbjct: 8   PSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 63

>pdb|3SHW|A Chain A, Crystal Structure Of Zo-1 Pdz3-Sh3-Guk Supramodule Complex With Connexin-45 Peptide Length = 468

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 94  MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
           +++ RK  ++G+ L GGN VGI+V  V   S     GL  GD+IL  N  D 
Sbjct: 4   LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 55

>pdb|3TSV|A Chain A, Crystal Structure Of The Third Pdz Domain Of The Human Zo-1 Maguk Protein Length = 124

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 90  PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
           P   +++ RK  ++G+ L GGN VGI+V  V   S     GL  GD+IL  N  D 
Sbjct: 28  PSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 83

>pdb|3SHU|A Chain A, Crystal Structure Of Zo-1 Pdz3 Length = 95

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 94  MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
           +++ RK  ++G+ L GGN VGI+V  V   S     GL  GD+IL  N  D 
Sbjct: 7   LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDF 58

>pdb|2EHR|A Chain A, Solution Structure Of The Sixth Pdz Domain Of Human Inad- Like Protein Length = 117

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 12/71 (16%)
Query: 88  GEPRFLMIETRKCSNLGISLVGGNAV-----------GIYVHSV-QSGSLGYSAGLRTGD 135
           G PR + I      +LGIS+VGG  V           GI++  V +    G +  L+TGD
Sbjct: 14  GPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGD 73
Query: 136 RILEYNGTDLR 146
           +ILE +G DL+
Sbjct: 74  KILEVSGVDLQ 84

>pdb|1UEZ|A Chain A, Solution Structure Of The First Pdz Domain Of Human Kiaa1526 Protein Length = 101

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 28/62 (45%), Positives = 34/62 (54%), Gaps = 3/62 (4%)
Query: 87  SGEPRFLMIETRKC-SNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
           SGE R + +   K    LG S+ GG+   VGIYV  V+ GSL    GLR GD+IL  N  
Sbjct: 6   SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDK 65
Query: 144 DL 145
            L
Sbjct: 66  SL 67

>pdb|1TP3|A Chain A, Pdz3 Domain Of Psd-95 Protein Complexed With Kketpv Peptide Ligand Length = 119

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 89  EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGS-LGYSAGLRTGDRILEYNGTDLR 146
           EPR ++I  R  + LG ++VGG +  GI++  + +G     S  LR GD+IL  NG DLR
Sbjct: 14  EPRRIVIH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 72
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
                            VT++A 
Sbjct: 73  NASHEQAAIALKNAGQTVTIIAQ 95

>pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 89  EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
           EPR ++I  R  + LG ++VGG +  GI++  + +G     +G LR GD+IL  NG DLR
Sbjct: 307 EPRRIVIH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 365
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
                            VT++A 
Sbjct: 366 NASHEQAAIALKNAGQTVTIIAQ 388

>pdb|1BE9|A Chain A, The Third Pdz Domain From The Synaptic Protein Psd-95 In Complex With A C-Terminal Peptide Derived From Cript. Length = 119

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 89  EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGS-LGYSAGLRTGDRILEYNGTDLR 146
           EPR ++I  R  + LG +++GG +  GI++  + +G     S  LR GD+IL  NG DLR
Sbjct: 14  EPRRIVIH-RGSTGLGFNIIGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 72
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
                            VT++A 
Sbjct: 73  NASHEQAAIALKNAGQTVTIIAQ 95

>pdb|3JXT|A Chain A, Crystal Structure Of The Third Pdz Domain Of Sap-102 In Complex With A Fluorogenic Peptide-Based Ligand Length = 104

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Query: 81  VCKDERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGS-LGYSAGLRTGDRIL 138
           + +++ + EPR +++  +  + LG ++VGG +  GI+V  + +G     S  LR GDRIL
Sbjct: 4   LAEEDFTREPRKIILH-KGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRIL 62
Query: 139 EYNGTDLRXXXXXXXXXXXXKPADKVTVLAH 169
             NG +LR            +    VT++A 
Sbjct: 63  SVNGVNLRNATHEQAAAALKRAGQSVTIVAQ 93

>pdb|3K82|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 98

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 89  EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
           EPR ++I  R  + LG ++VGG    GI++  + +G     +G LR GD+IL  NG DLR
Sbjct: 6   EPRRIVIH-RGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 64
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
                            VT++A 
Sbjct: 65  NASHEQAAIALKNAGQTVTIIAQ 87

>pdb|2FCF|A Chain A, The Crystal Structure Of The 7th Pdz Domain Of Mpdz (Mupp-1) Length = 103

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 86  RSGEPRFLMIETRKCSNLGISLVGGNAVG-----------IYV-HSVQSGSLGYSAGLRT 133
           +S +PR + +      +LGIS+VGG  +G           I++ H ++    G +  L+ 
Sbjct: 1   QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60
Query: 134 GDRILEYNGTDLRXXXXXXXXXXXXKPADKVTVLAHS 170
           GDRI+E +G DLR            K  + V  +  S
Sbjct: 61  GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 97

>pdb|3I4W|A Chain A, Crystal Structure Of The Third Pdz Domain Of Psd-95 Length = 104

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 89  EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGS-LGYSAGLRTGDRILEYNGTDLR 146
           EPR ++I  R  + LG ++VGG    GI++  + +G     S  LR GD+IL  NG DLR
Sbjct: 11  EPRRIVIH-RGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLR 69
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
                            VT++A 
Sbjct: 70  NASHEQAAIALKNAGQTVTIIAQ 92

>pdb|2IWQ|A Chain A, 7th Pdz Domain Of Multiple Pdz Domain Protein Mpdz Length = 123

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/97 (27%), Positives = 44/97 (45%), Gaps = 12/97 (12%)
Query: 86  RSGEPRFLMIETRKCSNLGISLVGGNAVG-----------IYV-HSVQSGSLGYSAGLRT 133
           +S +PR + +      +LGIS+VGG  +G           I++ H ++    G +  L+ 
Sbjct: 21  QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 80
Query: 134 GDRILEYNGTDLRXXXXXXXXXXXXKPADKVTVLAHS 170
           GDRI+E +G DLR            K  + V  +  S
Sbjct: 81  GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQS 117

>pdb|1UM7|A Chain A, Solution Structure Of The Third Pdz Domain Of Synapse- Associated Protein 102 Length = 113

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 3/83 (3%)
Query: 89  EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
           EPR +++  +  + LG ++VGG +  GI+V  + +G     +G LR GDRIL  NG +LR
Sbjct: 15  EPRKIILH-KGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLR 73
Query: 147 XXXXXXXXXXXXKPADKVTVLAH 169
                       +    VT++A 
Sbjct: 74  NATHEQAAAALKRAGQSVTIVAQ 96

>pdb|2DM8|A Chain A, Solution Structure Of The Eighth Pdz Domain Of Human Inad- Like Protein Length = 116

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 93  LMIETRKC-SNLGISLVGGNAV---GIYVHSV-QSGSLGYSAGLRTGDRILEYNGTDLRX 147
           ++IE  K  S LG+S+VGG       I +H V + G+      L  GD+ILE NG DLR 
Sbjct: 19  MIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRN 78
Query: 148 XXXXXXXXXXXKPADKVTVLAHSD 171
                      +   KV ++ + D
Sbjct: 79  SSHEEAITALRQTPQKVRLVVYRD 102

>pdb|1PDR|A Chain A, Crystal Structure Of The Third Pdz Domain From The Human Homolog Of Discs Large Protein Length = 99

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 3/88 (3%)
Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGS-LGYSAGLRTGDRILEYN 141
           DE + EPR +++  R  + LG ++VGG +  GI++  + +G     S  LR GDRI+  N
Sbjct: 2   DEITREPRKVVLH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDRIISVN 60
Query: 142 GTDLRXXXXXXXXXXXXKPADKVTVLAH 169
             DLR                 VT++A 
Sbjct: 61  SVDLRAASHEQAAAALKNAGQAVTIVAQ 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	8e-27
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	3e-22
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-21
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-13
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	1e-04
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	3e-20
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	8e-20
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	2e-07
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	3e-19
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	3e-18
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	5e-18
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	3e-08
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	4e-17
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	1e-08
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	2e-16
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	1e-06
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	4e-16
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	5e-16
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	1e-15
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	1e-15
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	6e-15
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	8e-15
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	1e-14
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	5e-09
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	2e-14
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	2e-14
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	1e-13
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	1e-13
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	2e-13
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	2e-13
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	3e-13
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	3e-13
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	3e-13
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	4e-13
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	4e-13
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	4e-04
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	5e-13
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	2e-10
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	5e-13
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	9e-13
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	9e-13
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	9e-13
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	9e-13
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	1e-12
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	1e-12
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	1e-12
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	2e-12
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	2e-12
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	3e-10
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	2e-12
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	2e-12
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	4e-12
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	5e-12
2opg_A	98	Multiple PDZ domain protein; structural protein, s	5e-12
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	6e-12
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	7e-12
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	7e-12
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	9e-12
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	1e-11
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	1e-11
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	1e-11
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	2e-11
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	2e-11
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	2e-11
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	2e-11
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	2e-11
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	2e-11
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	2e-11
2fne_A	117	Multiple PDZ domain protein; structural protein, s	2e-11
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	2e-11
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	2e-11
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-11
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	3e-08
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	3e-11
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	1e-10
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	3e-11
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	3e-11
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	3e-11
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	3e-11
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	3e-11
2awx_A	105	Synapse associated protein 97; membrane protein, s	3e-11
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	3e-11
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	3e-11
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	4e-11
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	4e-11
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	4e-11
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	4e-11
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	5e-11
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	5e-11
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	6e-11
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	6e-11
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	6e-11
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	7e-11
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	7e-11
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	9e-11
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	9e-11
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	9e-11
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	9e-11
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	9e-11
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	1e-10
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	1e-10
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	1e-10
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	1e-10
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	2e-10
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	2e-10
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	2e-10
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	2e-10
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	2e-10
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	3e-10
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	3e-10
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	3e-10
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	3e-10
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	3e-10
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	4e-10
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	4e-10
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	6e-10
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	6e-10
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	8e-10
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	9e-10
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	1e-09
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	1e-09
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	1e-09
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	1e-09
2ego_A	96	General receptor for phosphoinositides 1- associat	1e-09
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	1e-09
2d90_A	102	PDZ domain containing protein 1; structural genomi	2e-09
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	2e-09
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	2e-09
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	2e-09
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	2e-09
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	2e-09
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	2e-09
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	2e-09
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	3e-09
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	3e-09
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	4e-09
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	4e-09
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	4e-09
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	4e-09
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	5e-09
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	5e-09
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	5e-09
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	5e-09
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	5e-09
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	7e-09
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	9e-09
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	9e-09
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	1e-08
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	1e-08
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	1e-08
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	1e-08
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	1e-08
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	1e-08
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	3e-06
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	1e-08
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	2e-08
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	2e-08
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	2e-08
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	2e-08
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	4e-08
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	6e-08
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	7e-08
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	8e-08
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	1e-07
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	1e-07
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	1e-07
3khf_A	99	Microtubule-associated serine/threonine-protein ki	1e-07
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	1e-07
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	2e-07
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	2e-07
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	2e-07
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	1e-06
4fgm_A	597	Aminopeptidase N family protein; structural genomi	4e-06
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	8e-06
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	9e-06
2kl1_A	94	YLBL protein; structure genomics, structural genom	9e-06
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	2e-05
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	2e-05
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	5e-05
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	8e-05
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	8e-05
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	1e-04
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	2e-04
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	4e-04
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	9e-04

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A Length = 124

 Score = 97.2 bits (242), Expect = 8e-27
 Identities = 33/108 (30%), Positives = 47/108 (43%), Gaps = 2/108 (1%)

Query: 66  KSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSL 125
                H++S  T     +      P   +++ RK  ++G+ L GGN VGI+V  V   S 
Sbjct: 4   SHHHHHHSSGGTENLYFQGHMILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSP 63

Query: 126 GYSAGLRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVLAHSD 171
               GL  GD+IL  N  D      EEA   L      ++VT+LA   
Sbjct: 64  AAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTILAQKK 111

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391

 Score = 91.0 bits (225), Expect = 3e-22
 Identities = 27/83 (32%), Positives = 35/83 (42%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
                 P   +++ RK  ++G+ L GGN VGI+V  V   S     GL  GD+IL  N  
Sbjct: 2   SHMILRPSMKLVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNV 61

Query: 144 DLRAATAEEAAYELAKPADKVTV 166
           D      EEA   L        V
Sbjct: 62  DFTNIIREEAVLFLLDLPKGEEV 84

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 90.0 bits (222), Expect = 1e-21
 Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 5/175 (2%)

Query: 1   MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENES--VSGRGSGSPTPC 58
           +    ++ A + L+   + + + V    + Y     +      + S  +    S S    
Sbjct: 217 LEDVMHEDAVAALKNTYDVVYLKVAKPSNAYLSDSYAPPDITTSYSQHLDNEISHSSYLG 276

Query: 59  NSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYV 117
               T    +     S + +  + +++   EPR ++I  R  + LG ++VGG +  GI++
Sbjct: 277 TDYPTAMTPTSPRRYSPVAKDLLGEEDIPREPRRIVIH-RGSTGLGFNIVGGEDGEGIFI 335

Query: 118 HSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD 171
             + +G     +G LR GD+IL  NG DLR A+ E+AA  L      VT++A   
Sbjct: 336 SFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVTIIAQYK 390

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 66.9 bits (162), Expect = 1e-13
 Identities = 28/137 (20%), Positives = 42/137 (30%), Gaps = 8/137 (5%)

Query: 39  SSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETR 98
           ++               +P + P       +  NT TL                 +   R
Sbjct: 8   TAKKYRYQDEDTPPLKHSPAHLPNQANSPPVIVNTDTLEAPGYVNGTEGEMEYEEITLER 67

Query: 99  KCSNLGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 150
             S LG S+ GG       +   I++  +  G      G LR  D IL  N  D+R  T 
Sbjct: 68  GNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTH 127

Query: 151 EEAAYELAKPADKVTVL 167
             A   L +    V + 
Sbjct: 128 SAAVEALKEAGSIVRLY 144

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721

 Score = 40.3 bits (93), Expect = 1e-04
 Identities = 26/104 (25%), Positives = 39/104 (37%), Gaps = 8/104 (7%)

Query: 78  RTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-------NAVGIYVHSVQSGSLGYSAG 130
           R +V + +   E    +   +    LG S+ GG           IYV  +  G   +  G
Sbjct: 142 RLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDG 201

Query: 131 -LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN 173
            L+ GD+IL  N   L     E+A   L    D V +     +N
Sbjct: 202 RLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLKVAKPSN 245

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 104

 Score = 79.7 bits (197), Expect = 3e-20
 Identities = 22/87 (25%), Positives = 44/87 (50%), Gaps = 3/87 (3%)

Query: 83  KDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEY 140
            +     PR + ++    + LG ++ GG  + +GI++  V   S  + AGL+ GD++L  
Sbjct: 9   NELTQFLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAV 68

Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
           N  D +     +A  E+ K A ++++ 
Sbjct: 69  NDVDFQDIEHSKAV-EILKTAREISMR 94

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 79.1 bits (195), Expect = 8e-20
 Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 1/85 (1%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
             EPR + ++ +    LGIS+V G   GIYV  V  GS+ + AGL  GD++LE+NG +LR
Sbjct: 17  VEEPRHVKVQ-KGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLR 75

Query: 147 AATAEEAAYELAKPADKVTVLAHSD 171
           +AT ++A   + +  D +T+LA  +
Sbjct: 76  SATEQQARLIIGQQCDTITILAQYN 100

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 15/41 (36%), Positives = 23/41 (56%)

Query: 1   MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSS 41
           +RSAT Q A  ++ Q  ++IT+L QY+P  +     S S  
Sbjct: 74  LRSATEQQARLIIGQQCDTITILAQYNPHVHQLSSHSRSGP 114

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468

 Score = 83.0 bits (204), Expect = 3e-19
 Identities = 26/74 (35%), Positives = 34/74 (45%)

Query: 94  MIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
           +++ RK  ++G+ L GGN VGI+V  V   S     GL  GD+IL  N  D      EEA
Sbjct: 4   LVKFRKGDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEA 63

Query: 154 AYELAKPADKVTVL 167
              L        V 
Sbjct: 64  VLFLLDLPKGEEVT 77

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A Length = 114

 Score = 75.2 bits (185), Expect = 3e-18
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 86  RSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
           R  + + + I       LG S+  G     GI++  V+ GSL    GL  GD+I+E NG 
Sbjct: 12  RENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGV 71

Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
           D      +EA   + K +  +T+ 
Sbjct: 72  DFSNLDHKEAV-NVLKSSRSLTIS 94

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 73.9 bits (182), Expect = 5e-18
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 3/87 (3%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGGNA-VGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
           ++   EPR ++I  R  + LG ++VGG    GI++  + +G     +G LR GD+IL  N
Sbjct: 6   EDIPREPRRIVIH-RGSTGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVN 64

Query: 142 GTDLRAATAEEAAYELAKPADKVTVLA 168
           G DLR A+ E+AA  L      VT++A
Sbjct: 65  GVDLRNASHEQAAIALKNAGQTVTIIA 91

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A Length = 104

 Score = 48.5 bits (116), Expect = 3e-08
 Identities = 12/36 (33%), Positives = 24/36 (66%)

Query: 1   MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEG 36
           +R+A+++ AA  L+  G ++T++ QY P++Y   E 
Sbjct: 68  LRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEA 103

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 72.1 bits (177), Expect = 4e-17
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 3/88 (3%)

Query: 83  KDERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
           +++   EPR ++I  R  + LG ++VGG +  GI++  + +G     +G LR GD+IL  
Sbjct: 8   EEDIPREPRRIVIH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSV 66

Query: 141 NGTDLRAATAEEAAYELAKPADKVTVLA 168
           NG DLR A+ E+AA  L      VT++A
Sbjct: 67  NGVDLRNASHEQAAIALKNAGQTVTIIA 94

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A Length = 119

 Score = 49.7 bits (119), Expect = 1e-08
 Identities = 13/48 (27%), Positives = 28/48 (58%)

Query: 1   MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVS 48
           +R+A+++ AA  L+  G ++T++ QY P++Y   E +    +    V+
Sbjct: 71  LRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEANSRVDSSGRIVT 118

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 71.4 bits (175), Expect = 2e-16
 Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 1/79 (1%)

Query: 89  EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 148
           +PR +++   +   +G+ L   +  GI+V  VQ+ S     GLR GD++L+ NG +    
Sbjct: 4   DPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 62

Query: 149 TAEEAAYELAKPADKVTVL 167
           ++++A   L +   +   +
Sbjct: 63  SSDKAHKVLKQAFGEKITM 81

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A Length = 166

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 15/60 (25%), Positives = 22/60 (36%)

Query: 108 VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           VG       + S+   S     GL T   I E NG ++      + A  L+     VT+ 
Sbjct: 102 VGFIFKNGKITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT 161

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 68.9 bits (169), Expect = 4e-16
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 3/83 (3%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 144
           S     + +E      LG S+ GG  + +GI+V  V+ GS    AGL  GD+I E NG  
Sbjct: 8   SDIIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLS 67

Query: 145 LRAATAEEAAYELAKPADKVTVL 167
           L + T   A  ++   + ++ ++
Sbjct: 68  LESTTMGSAV-KVLTSSSRLHMM 89

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 68.5 bits (168), Expect = 5e-16
 Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 12/100 (12%)

Query: 86  RSGEPRFLMIETRKCSNLGISLVGG-----------NAVGIYVHSVQSGSLGYSAG-LRT 133
           +S +PR + +      +LGIS+VGG              GI++  V   S     G L+ 
Sbjct: 1   QSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKP 60

Query: 134 GDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN 173
           GDRI+E +G DLR A+ E+A   + K  + V  +  S  +
Sbjct: 61  GDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 100

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 117

 Score = 68.3 bits (167), Expect = 1e-15
 Identities = 29/96 (30%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG-----------NAVGIYVHSVQSGSLGYSAG-L 131
               G PR + I      +LGIS+VGG              GI++  V   S       L
Sbjct: 10  FSHWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNAL 69

Query: 132 RTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           +TGD+ILE +G DL+ A+  EA   +    + V  +
Sbjct: 70  KTGDKILEVSGVDLQNASHSEAVEAIKNAGNPVVFI 105

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens} Length = 123

 Score = 68.3 bits (167), Expect = 1e-15
 Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 12/118 (10%)

Query: 68  SIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-----------NAVGIY 116
              H++S +         +S +PR + +      +LGIS+VGG              GI+
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIF 62

Query: 117 VHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN 173
           +  V   S     G L+ GDRI+E +G DLR A+ E+A   + K  + V  +  S  +
Sbjct: 63  IKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEAIRKAGNPVVFMVQSIIS 120

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 101

 Score = 65.8 bits (161), Expect = 6e-15
 Identities = 32/84 (38%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 87  SGEPRFLMIE-TRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
           SGE R + +   +    LG S+ GG  + VGIYV  V+ GSL    GLR GD+IL  N  
Sbjct: 6   SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDK 65

Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
            L   T  EA  +  K + K+ + 
Sbjct: 66  SLARVTHAEAV-KALKGSKKLVLS 88

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 106

 Score = 65.9 bits (161), Expect = 8e-15
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 2/85 (2%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGGNA-VGIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
              SG+PR   +  ++  + G SL       G+Y+  +    +   AG+   D ++E NG
Sbjct: 3   SGSSGQPRLCYLV-KEGGSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNG 61

Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
            ++  A+ EE   ++ K   +V  L
Sbjct: 62  ENVEDASHEEVVEKVKKSGSRVMFL 86

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 65.5 bits (160), Expect = 1e-14
 Identities = 33/84 (39%), Positives = 51/84 (60%), Gaps = 3/84 (3%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 144
           + EPR +++  +  + LG ++VGG +  GI+V  + +G     +G LR GDRIL  NG +
Sbjct: 13  AREPRKIILH-KGSTGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVN 71

Query: 145 LRAATAEEAAYELAKPADKVTVLA 168
           LR AT E+AA  L +    VT++A
Sbjct: 72  LRNATHEQAAAALKRAGQSVTIVA 95

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 113

 Score = 50.4 bits (121), Expect = 5e-09
 Identities = 18/42 (42%), Positives = 30/42 (71%)

Query: 1   MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSA 42
           +R+AT++ AA+ L++ G S+T++ QY P++Y   E SG SS 
Sbjct: 72  LRNATHEQAAAALKRAGQSVTIVAQYRPEEYSRFESSGPSSG 113

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A Length = 106

 Score = 64.7 bits (158), Expect = 2e-14
 Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 6/90 (6%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRI 137
                EP  + +  +K + +G+S+V       + +GIYV SV  G      G L  GD++
Sbjct: 4   GSDHKEPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQL 63

Query: 138 LEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           L  +G  L   + E AA  + + +  VT+ 
Sbjct: 64  LSVDGRSLVGLSQERAAELMTRTSSVVTLE 93

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 128

 Score = 65.2 bits (159), Expect = 2e-14
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 74  STLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGL 131
           S+  R       + G+ + + +      +LG+++ GG    +GIY+  V  GS    +GL
Sbjct: 5   SSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGL 64

Query: 132 RTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           + GD+ILE NG        +EA   L K +  + + 
Sbjct: 65  KVGDQILEVNGRSFLNILHDEAV-RLLKSSRHLILT 99

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A Length = 192

 Score = 65.0 bits (158), Expect = 1e-13
 Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)

Query: 86  RSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
           RS + + + ++      LG+S+ GG     G+++  +  G    S GL+ GD I+  NG 
Sbjct: 81  RSRKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGY 140

Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
            + + T EE    L +    V++ 
Sbjct: 141 SISSCTHEEVI-NLIRTEKTVSIK 163

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens} Length = 103

 Score = 62.4 bits (152), Expect = 1e-13
 Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 83  KDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILE 139
           K +  G  R +++       LGIS+ GG  + V I +  +  G      G L  GD IL 
Sbjct: 3   KSQGVGPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILA 62

Query: 140 YNGTDLRAATAEEAAYELAKPADKVT 165
            NG +LR    +EA   L++   ++ 
Sbjct: 63  VNGVNLRDTKHKEAVTILSQQRGEIE 88

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 91

 Score = 62.0 bits (151), Expect = 2e-13
 Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 1/66 (1%)

Query: 103 LGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPA 161
            G S+  G    G+YV +++    G   GL+  DR+L+ N    R          +A+  
Sbjct: 21  FGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESG 80

Query: 162 DKVTVL 167
           +K+ ++
Sbjct: 81  NKLDLV 86

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A Length = 91

 Score = 61.9 bits (151), Expect = 2e-13
 Identities = 23/79 (29%), Positives = 38/79 (48%), Gaps = 2/79 (2%)

Query: 90  PRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 148
           PR   +E +  +  G  L G    +G Y+  V+ GS    AGL  GDR++E NG ++   
Sbjct: 4   PRLCCLE-KGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKE 62

Query: 149 TAEEAAYELAKPADKVTVL 167
           T ++    +    + V +L
Sbjct: 63  THQQVVSRIRAALNAVRLL 81

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens} Length = 95

 Score = 61.5 bits (150), Expect = 3e-13
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 2/67 (2%)

Query: 103 LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP 160
           LGI LV   +  G+++  +  G L    G L + DR+L  NG DL+  T E AA  +   
Sbjct: 18  LGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQAS 77

Query: 161 ADKVTVL 167
            ++V + 
Sbjct: 78  GERVNLT 84

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens} Length = 92

 Score = 61.1 bits (149), Expect = 3e-13
 Identities = 26/65 (40%), Positives = 35/65 (53%), Gaps = 2/65 (3%)

Query: 103 LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP 160
           LG+S+VG  N  G++V  +  G +  + G L  GD+IL  NG D+R AT E  A  L   
Sbjct: 18  LGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCS 77

Query: 161 ADKVT 165
              VT
Sbjct: 78  LGTVT 82

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A Length = 90

 Score = 61.1 bits (149), Expect = 3e-13
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
           S + R + +       LGIS+ GG  N + I +  +  G        L  GD IL  NG 
Sbjct: 2   SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 61

Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
           DL +AT +EA   L K   +V + 
Sbjct: 62  DLSSATHDEAVQALKKTGKEVVLE 85

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 61.2 bits (149), Expect = 4e-13
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 84  DERSGEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTG 134
           +    E   L +   + +  LGIS+ GG        +  GI++  V        AG+R G
Sbjct: 8   EPARIEEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVG 67

Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           D++LE NG  L+ A   EA   L      V + 
Sbjct: 68  DKLLEVNGVALQGAEHHEAVEALRGAGTAVQMR 100

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 61.2 bits (149), Expect = 4e-13
 Identities = 26/85 (30%), Positives = 41/85 (48%), Gaps = 2/85 (2%)

Query: 85  ERSGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
           E         +E     + LG  +VGG   G+ V ++  G L    G L+TGD IL+  G
Sbjct: 9   ETVCWGHVEEVELINDGSGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGG 68

Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
           T+++  T+E+ A  L    + V +L
Sbjct: 69  TNVQGMTSEQVAQVLRNCGNSVRML 93

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 111

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 15/40 (37%), Positives = 20/40 (50%)

Query: 1   MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSS 40
           ++  T +  A VLR CGNS+ MLV   P     +    SS
Sbjct: 71  VQGMTSEQVAQVLRNCGNSVRMLVARDPAGDISVTSGPSS 110

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 63.2 bits (154), Expect = 5e-13
 Identities = 16/87 (18%), Positives = 34/87 (39%), Gaps = 3/87 (3%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
                    + +  ++ + LG+++ GG        V +++ G +   +  L  GD I   
Sbjct: 2   PGSFKGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAV 61

Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
           NG +L     +E    L    ++V + 
Sbjct: 62  NGINLAKFRHDEIISLLKNVGERVVLE 88

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus} Length = 200

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 78  RTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG------NAVGIYVHSVQSGSLGYSAG 130
              V     S   R + +   K  N  G  + GG       +  + +  V+ G      G
Sbjct: 93  LPPVSIQGSSVMFRTVEVTLHKEGNTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREG 152

Query: 131 -LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
            ++ GDR+L  +G  L   T  EA   L +   + T+L
Sbjct: 153 TIKPGDRLLSVDGIRLLGTTHAEAMSILKQCGQEATLL 190

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens} Length = 97

 Score = 60.8 bits (148), Expect = 5e-13
 Identities = 29/89 (32%), Positives = 39/89 (43%), Gaps = 9/89 (10%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTGDRIL 138
           S E   L I  R+   LGIS+ GG        +  GI++  V        AG+R GD++L
Sbjct: 1   SMEELTLTIL-RQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLL 59

Query: 139 EYNGTDLRAATAEEAAYELAKPADKVTVL 167
           E NG  L+ A   EA   L      V + 
Sbjct: 60  EVNGVALQGAEHHEAVEALRGAGTAVQMR 88

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens} Length = 90

 Score = 60.1 bits (146), Expect = 9e-13
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 1/75 (1%)

Query: 93  LMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEE 152
           +     K  + G ++      GI+V SV++GS    + L+  D I+  N T      ++E
Sbjct: 9   INQTPGKSLDFGFTIKWDIP-GIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKE 67

Query: 153 AAYELAKPADKVTVL 167
               +AK  +   ++
Sbjct: 68  WEEAMAKAQETGHLV 82

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens} Length = 112

 Score = 60.5 bits (147), Expect = 9e-13
 Identities = 25/102 (24%), Positives = 44/102 (43%), Gaps = 4/102 (3%)

Query: 67  SSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGS 124
               H++  +   H+ ++      R +++       LGIS+ GG  + V I +  +  G 
Sbjct: 6   HHHHHSSGHIEGRHM-ENLYFQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQ 64

Query: 125 LGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 165
                G L  GD IL  NG +LR    +EA   L++   ++ 
Sbjct: 65  PADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE 106

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens} Length = 128

 Score = 61.0 bits (148), Expect = 9e-13
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
                 PR   ++ +  S  G +L    +  G ++ SV   S   ++GLR  DRI+E NG
Sbjct: 4   PFTMLRPRLCTMK-KGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNG 62

Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
             +      +    +    D+  +L
Sbjct: 63  VCMEGKQHGDVVSAIRAGGDETKLL 87

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 93

 Score = 59.9 bits (146), Expect = 9e-13
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 4/88 (4%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
           SG    + +  +    LG +++GG      IY+  V  G +    G L+ GD++L  NG 
Sbjct: 3   SGSSGVVELP-KTDEGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGV 61

Query: 144 DLRAATAEEAAYELAKPADKVTVLAHSD 171
            +     E+A   L      V ++  S 
Sbjct: 62  SVEGEQHEKAVELLKAAQGSVKLVVRSG 89

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A Length = 96

 Score = 59.9 bits (146), Expect = 1e-12
 Identities = 29/86 (33%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 89  EPRFLMIETRKCSN-LGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
                 +E  K  N LGIS+ GG        GIYV +V       S G +  GDR+L  N
Sbjct: 3   PGDIFEVELAKNDNSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVN 62

Query: 142 GTDLRAATAEEAAYELAKPADKVTVL 167
           G  L  AT ++A   L      V +L
Sbjct: 63  GVSLEGATHKQAVETLRNTGQVVHLL 88

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A Length = 91

 Score = 59.6 bits (145), Expect = 1e-12
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 2/82 (2%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
           S +P+   +  +  +  G  L       G ++  VQ G     AGL   D I+E NG ++
Sbjct: 1   SMKPKLCRLA-KGENGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNV 59

Query: 146 RAATAEEAAYELAKPADKVTVL 167
                E+    +      VT+L
Sbjct: 60  LDEPYEKVVDRIQSSGKNVTLL 81

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens} Length = 92

 Score = 59.3 bits (144), Expect = 2e-12
 Identities = 17/82 (20%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 88  GEPRFLMIE-TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
            +P  + +  + K    G+ L       I+V  +   SL    G ++ GD +L+ NGT  
Sbjct: 1   AKPTKVTLVKSAKNEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVT 56

Query: 146 RAATAEEAAYELAKPADKVTVL 167
              +  +A   + +   K+ ++
Sbjct: 57  ENMSLTDAKTLIERSKGKLKMV 78

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 61.7 bits (150), Expect = 2e-12
 Identities = 21/115 (18%), Positives = 44/115 (38%), Gaps = 7/115 (6%)

Query: 66  KSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN--LGISLVGG----NAVGIYVHS 119
           + S   +  TL       +          ++  K  +  LGI++           + +  
Sbjct: 82  RDSSITSKVTLEIEFDVAESVIPSSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISD 141

Query: 120 VQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDTN 173
           ++ GS+ +  G L  GD++L  +   L + + E+A   L +  D V +    D +
Sbjct: 142 IKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 196

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A Length = 196

 Score = 55.5 bits (134), Expect = 3e-10
 Identities = 19/87 (21%), Positives = 32/87 (36%), Gaps = 7/87 (8%)

Query: 88  GEPRFLMIETRKCSNLGISLVGGNA------VGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
            E   +++     +  GI L G             +  +++ S     G L+ GDR++  
Sbjct: 5   TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAI 64

Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
           NG     +T EEA   L   +    V 
Sbjct: 65  NGIPTEDSTFEEANQLLRDSSITSKVT 91

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A Length = 114

 Score = 59.8 bits (145), Expect = 2e-12
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 3/99 (3%)

Query: 71  HNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYS 128
           H++S +         +S  P  + ++    + +GIS+ GG      +Y+  V   +    
Sbjct: 6   HHSSGVDLGTENLYFQSMVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAAL 65

Query: 129 AG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
            G +  GD I   NG  ++  T  E A  + +   +VT+
Sbjct: 66  DGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVTI 104

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A Length = 170

 Score = 60.7 bits (147), Expect = 2e-12
 Identities = 35/157 (22%), Positives = 58/157 (36%), Gaps = 15/157 (9%)

Query: 25  QYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGT----NRKSSIQHNTSTLTRTH 80
            Y P+    +E  G S  E+ + S +   S  P     T    +     +          
Sbjct: 11  PYEPE-SGCVEIPGLSEEEDPAPSRKIHFSTAPIQVFSTYSNEDYDRRNEDVDPMAASAE 69

Query: 81  VCKDERSGEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG- 130
              ++R        +E  K S  LGIS++G           +GI+V +V  G   +  G 
Sbjct: 70  YELEKRVERLELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGR 129

Query: 131 LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           ++  D ++E +GT L   T   AA  L     +V  +
Sbjct: 130 IQVNDLLVEVDGTSLVGVTQSFAASVLRNTKGRVRFM 166

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens} Length = 98

 Score = 58.5 bits (142), Expect = 4e-12
 Identities = 20/85 (23%), Positives = 35/85 (41%), Gaps = 2/85 (2%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
                 PR   ++ +  S  G +L    +  G ++ SV   S   ++GLR  DRI+E NG
Sbjct: 4   PFTMLRPRLCTMK-KGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNG 62

Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
             +      +    +    D+  +L
Sbjct: 63  VCMEGKQHGDVVSAIRAGGDETKLL 87

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens} Length = 118

 Score = 58.6 bits (142), Expect = 5e-12
 Identities = 24/103 (23%), Positives = 48/103 (46%), Gaps = 6/103 (5%)

Query: 71  HNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-----NAVGIYVHSVQSGSL 125
           H++S +         +S   + + I+     +LG+++ GG       + IYV SV+ G +
Sbjct: 6   HHSSGVDLGTENLYFQSMHEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGV 65

Query: 126 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
               G ++TGD +L  +G +L   +  EA   L + +  + + 
Sbjct: 66  ISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSSSIVLK 108

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens} Length = 98

 Score = 58.1 bits (141), Expect = 5e-12
 Identities = 30/78 (38%), Positives = 38/78 (48%), Gaps = 5/78 (6%)

Query: 95  IETRKCSN-LGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAAT 149
           IE  K    LG+S+VGG       I +H V         G L  GD+ILE NG DLR AT
Sbjct: 8   IEISKGRTGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKAT 67

Query: 150 AEEAAYELAKPADKVTVL 167
            +EA   L +   +V + 
Sbjct: 68  HDEAINVLRQTPQRVRLT 85

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A Length = 125

 Score = 58.6 bits (142), Expect = 6e-12
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 3/84 (3%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
              P  + ++    + +GIS+ GG      +Y+  V   +     G +  GD I   NG 
Sbjct: 17  PTVPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGR 76

Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
            ++  T  E A  + +   +VT+ 
Sbjct: 77  SIKGKTKVEVAKMIQEVKGEVTIH 100

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens} Length = 83

 Score = 57.2 bits (139), Expect = 7e-12
 Identities = 19/79 (24%), Positives = 35/79 (44%), Gaps = 3/79 (3%)

Query: 89  EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 148
             R + +  R  +  G +L G       +  V  GS     GLR GD+IL  N  +++ A
Sbjct: 2   RVRSVEVA-RGRAGYGFTLSGQA--PCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKA 58

Query: 149 TAEEAAYELAKPADKVTVL 167
           + E+    + K +  + ++
Sbjct: 59  SHEDVVKLIGKCSGVLHMV 77

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 58.2 bits (141), Expect = 7e-12
 Identities = 24/103 (23%), Positives = 43/103 (41%), Gaps = 8/103 (7%)

Query: 73  TSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-------NAVGIYVHSVQSGSL 125
           +S  +  ++    R    R     T   + LGI +VGG         +G Y+  +  G  
Sbjct: 2   SSGSSGHYIFPHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGS 61

Query: 126 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
               G L  G ++LE+NG  L + T EE    +++ + +  + 
Sbjct: 62  AEQTGKLMEGMQVLEWNGIPLTSKTYEEVQSIISQQSGEAEIC 104

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens} Length = 97

 Score = 57.6 bits (140), Expect = 9e-12
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 8/81 (9%)

Query: 95  IETRKCSN-LGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
           +   K  N  G  + GG       +  + + SV+ G      G ++ GDR+L  +G  L 
Sbjct: 7   VTLHKEGNTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLL 66

Query: 147 AATAEEAAYELAKPADKVTVL 167
             T  EA   L +   +  +L
Sbjct: 67  GTTHAEAMSILKQCGQEAALL 87

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens} Length = 121

 Score = 57.8 bits (140), Expect = 1e-11
 Identities = 29/115 (25%), Positives = 49/115 (42%), Gaps = 11/115 (9%)

Query: 62  GTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGGN-----AVGI 115
           G++      H +  L        ++ G+   L I+ +K +  LG S+   +     +  I
Sbjct: 3   GSHHHHHHHHGSENLYFQGSYNTKKIGKR--LNIQLKKGTEGLGFSITSRDVTIGGSAPI 60

Query: 116 YVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVL 167
           YV ++         G L+ GDR++E NG DL   + EE    L   K    V++L
Sbjct: 61  YVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKMEGTVSLL 115

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus} Length = 113

 Score = 57.8 bits (140), Expect = 1e-11
 Identities = 25/90 (27%), Positives = 39/90 (43%), Gaps = 10/90 (11%)

Query: 88  GEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDRI 137
           G      +E  K S  LGIS++G           +GI+V +V  G   +  G ++  D +
Sbjct: 1   GHMELFPVELEKDSEGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLL 60

Query: 138 LEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           +E +GT L   T   AA  L     +V  +
Sbjct: 61  VEVDGTSLVGVTQSFAASVLRNTKGRVRFM 90

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 57.5 bits (139), Expect = 1e-11
 Identities = 25/83 (30%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
           +  P  + I     S LGISL      N   I +  ++  S+   +G L  GD IL  +G
Sbjct: 13  ASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDG 72

Query: 143 TDLRAATAEEAAYELAKPADKVT 165
           T +   +  EA   LA  ++KV 
Sbjct: 73  TSMEHCSLLEATKLLASISEKVR 95

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A Length = 90

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 89  EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
            PR   +  +     G +L    +  G Y+ SV  GS    +GLR  DR++E NG ++  
Sbjct: 4   RPRLCHLR-KGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEG 62

Query: 148 ATAEEAAYELAKPADKVTVL 167
               E    +    D+  +L
Sbjct: 63  LRHAEVVASIKAREDEARLL 82

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A Length = 96

 Score = 56.9 bits (138), Expect = 2e-11
 Identities = 15/66 (22%), Positives = 25/66 (37%), Gaps = 2/66 (3%)

Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA 161
           LG+SL      G  +  +  G        L+ GD I ++NG  L     + +        
Sbjct: 22  LGLSLSPNEI-GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGAN 80

Query: 162 DKVTVL 167
            KV++ 
Sbjct: 81  GKVSME 86

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 124

 Score = 57.5 bits (139), Expect = 2e-11
 Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 5/101 (4%)

Query: 72  NTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG---NAVGIYVHSVQSGSLGY 127
           +    T   + +          +IE  K  N LG+SL G    + + I+V  +       
Sbjct: 6   SGDAFTDQKIRQRYADLPGELHIIELEKDKNGLGLSLAGNKDRSRMSIFVVGINPEGPAA 65

Query: 128 SAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           + G +R GD +LE N   L   + + A+  +     KV ++
Sbjct: 66  ADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSKVKLV 106

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens} Length = 112

 Score = 57.0 bits (138), Expect = 2e-11
 Identities = 22/102 (21%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 69  IQHNTSTLTRTHVCKDERSGEPR-FLMIE-TRKCSNLGISLVGG--NAVGIYVHSVQSGS 124
           + H+    +   +  +    +   F  +E  R     G SL GG    + +YV  +    
Sbjct: 1   MHHHHHHSSGVDLGTENLYFQSMDFYTVELERGAKGFGFSLRGGREYNMDLYVLRLAEDG 60

Query: 125 LGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT 165
               +G +R GD ILE NG   +      A   +     +V 
Sbjct: 61  PAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRVR 102

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1 Length = 98

 Score = 56.5 bits (137), Expect = 2e-11
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 103 LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEA 153
            GI +V G           GI++  +   S  +  G L+ GDRIL  NG D+R +T +  
Sbjct: 19  FGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV 78

Query: 154 AYELAKPADKVTVL 167
              + +   K+ + 
Sbjct: 79  IDLIKEADFKIELE 92

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A Length = 120

 Score = 57.4 bits (139), Expect = 2e-11
 Identities = 23/106 (21%), Positives = 41/106 (38%), Gaps = 6/106 (5%)

Query: 68  SIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-----NAVGIYVHSVQS 122
              H++S +         +S   R + ++     +LGIS+ GG       V I++  +  
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHP 62

Query: 123 GSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
             +      LR GDRI+   GT     T  +A   L   +  + + 
Sbjct: 63  TGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNASGSIEMQ 108

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 116

 Score = 57.0 bits (138), Expect = 2e-11
 Identities = 30/84 (35%), Positives = 43/84 (51%), Gaps = 5/84 (5%)

Query: 89  EPRFLMIETRKCSN-LGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
             + ++IE  K  + LG+S+VGG       I +H V         G L  GD+ILE NG 
Sbjct: 15  PGQEMIIEISKGRSGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGV 74

Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
           DLR ++ EEA   L +   KV ++
Sbjct: 75  DLRNSSHEEAITALRQTPQKVRLV 98

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 57.0 bits (138), Expect = 2e-11
 Identities = 29/105 (27%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 70  QHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG-----NAVGIYVHSVQSG 123
            H+ S+              P+   I   +  + LG S+VGG       + IYV +V + 
Sbjct: 4   HHHHSSGVDLGTENLYFQSMPQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAK 63

Query: 124 SLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
                 G L+ GD+I+  NG  L   T EEA   L +    VT++
Sbjct: 64  GAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKGTVTLM 108

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus} Length = 114

 Score = 56.7 bits (137), Expect = 2e-11
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 89  EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
            PR   +  ++  N G  L    +  G  +  ++ GS    AGL  GDR+L  NG  +  
Sbjct: 13  NPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDK 72

Query: 148 ATAEEAAYELAKPADKVTVL 167
               +   EL + +     L
Sbjct: 73  EEHAQVV-ELVRKSGNSVTL 91

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A Length = 131

 Score = 57.1 bits (138), Expect = 2e-11
 Identities = 30/126 (23%), Positives = 48/126 (38%), Gaps = 19/126 (15%)

Query: 48  SGRGSGSPTPCN-SPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGIS 106
           SG       P    P  +    I      L +            +   +     + LG+ 
Sbjct: 6   SGHSHSDKHPVTWQPSKDGDRLIGR--ILLNK----------RLKDGSVPRDSGAMLGLK 53

Query: 107 LVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP 160
           +VGG       +  ++  V+ GSL  + G LR GD +LE+NG  L+ AT EE    + + 
Sbjct: 54  VVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILES 113

Query: 161 ADKVTV 166
             +  V
Sbjct: 114 KPEPQV 119

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 58.8 bits (142), Expect = 3e-11
 Identities = 24/118 (20%), Positives = 39/118 (33%), Gaps = 4/118 (3%)

Query: 53  GSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN--LGISLVGG 110
           G+P    S  T +   + H T     T         E     ++  K +   LG+SL   
Sbjct: 75  GTPIHVGSMTTLKVHQLFHTTYEKAVTLTVFRADPPELEKFNVDLMKKAGKELGLSLSPN 134

Query: 111 NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
              G  +  +  G        L+ GD I ++NG  L     +           KV++ 
Sbjct: 135 EI-GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSME 191

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster} Length = 206

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 7/78 (8%)

Query: 97  TRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR--AAT 149
             +   +G+ + GG       G  +  V       +   L+  D I + NGT +   + T
Sbjct: 25  KVEKKPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMT 84

Query: 150 AEEAAYELAKPADKVTVL 167
             +         +K   L
Sbjct: 85  TLKVHQLFHTTYEKAVTL 102

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 87  SGEPRFLMIE-TRKCSNLGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRI 137
           SG   +  I   R  S LG S+ GG       +   I++  +  G      G LR  D I
Sbjct: 1   SGSMEYEEITLERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSI 60

Query: 138 LEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           L  N  D+R  T   A   L +    V + 
Sbjct: 61  LFVNEVDVREVTHSAAVEALKEAGSIVRLY 90

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A Length = 196

 Score = 56.7 bits (137), Expect = 1e-10
 Identities = 25/105 (23%), Positives = 39/105 (37%), Gaps = 8/105 (7%)

Query: 71  HNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG-------NAVGIYVHSVQSG 123
               ++ R +V + +   E    +   +    LG S+ GG           IYV  +  G
Sbjct: 81  KEAGSIVRLYVMRRKPPAEKVMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEG 140

Query: 124 SLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
              +  G L+ GD+IL  N   L     E+A   L    D V + 
Sbjct: 141 GAAHKDGRLQIGDKILAVNSVGLEDVMHEDAVAALKNTYDVVYLK 185

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1 Length = 117

 Score = 56.6 bits (137), Expect = 3e-11
 Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 9/107 (8%)

Query: 70  QHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQ 121
            H+  +       ++        + I+  K    LG S+ GG           IYV  + 
Sbjct: 3   HHHHHSSGVDLGTENLYFQSMTVVEIKLFKGPKGLGFSIAGGVGNQHIPGDNSIYVTKII 62

Query: 122 SGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
            G      G L+ GDR+L  N   L   T EEA   L   ++ V + 
Sbjct: 63  DGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNTSEVVYLK 109

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster} Length = 106

 Score = 56.2 bits (136), Expect = 3e-11
 Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 2/66 (3%)

Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA 161
           LG+SL      G  +  +  G        L+ GD I ++NG  L     +          
Sbjct: 16  LGLSLSPNEI-GCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN 74

Query: 162 DKVTVL 167
            KV++ 
Sbjct: 75  GKVSME 80

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A Length = 93

 Score = 56.2 bits (136), Expect = 3e-11
 Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 4/81 (4%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
           SG  R ++I+ +     G ++ G     + V SV+ G     AG++ GDRI++ NGT + 
Sbjct: 6   SGVQRCVIIQ-KDQHGFGFTVSGDR--IVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVT 62

Query: 147 AATAEEAAYELAKPADKVTVL 167
            ++  E   +L K    V + 
Sbjct: 63  NSSHLEVV-KLIKSGAYVALT 82

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A Length = 139

 Score = 57.4 bits (138), Expect = 3e-11
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 14/93 (15%)

Query: 89  EPRFLMIETRKCSNLGISLVGG--------------NAVGIYVHSVQSGSLGYSAGLRTG 134
                 +   +   LG S+ GG                 GIYV  V  G     AGL+ G
Sbjct: 26  RVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIG 85

Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           D+I++ NG D+   T ++A   L K +++V  L
Sbjct: 86  DKIMQVNGWDMTMVTHDQARKRLTKRSEEVVRL 118

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1 Length = 91

 Score = 55.8 bits (135), Expect = 3e-11
 Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
           S   R + I  R     G ++   +   + V +V SG     AGL+  D +L+ N   + 
Sbjct: 1   SMRYRQITIP-RGKDGFGFTICCDS--PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVE 57

Query: 147 AATAEEAAYELAKPADKVTVL 167
                E A+E+     ++ +L
Sbjct: 58  HWKCVELAHEIRSCPSEIILL 78

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A Length = 105

 Score = 56.2 bits (136), Expect = 3e-11
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 90  PRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
            + + I+  K    LG S+ GG           IYV  +  G   +  G L+ GD++L  
Sbjct: 2   EKIMEIKLIKGPKGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAV 61

Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
           N   L   T EEA   L   +D V + 
Sbjct: 62  NSVSLEEVTHEEAVTALKNTSDFVYLK 88

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic} Length = 108

 Score = 56.2 bits (136), Expect = 3e-11
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 9/98 (9%)

Query: 79  THVCKDERSGEPRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG 130
           +H   D        + +   K ++ LGIS+ G         A GIYV S+  GS     G
Sbjct: 2   SHGYSDASGFSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDG 61

Query: 131 -LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
            +   D+IL  +  +++     +    L    + V +L
Sbjct: 62  RIEPNDKILRVDDVNVQGMAQSDVVEVLRNAGNPVRLL 99

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 56.3 bits (136), Expect = 3e-11
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
           SG    L+   +  + LGI++ GG         + ++Q G   ++ G L+ G  ILE NG
Sbjct: 3   SGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62

Query: 143 TDLRAATAEEAAYELAKPADKVT 165
             LR     EAA  +A+      
Sbjct: 63  LTLRGKEHREAARIIAEAFKTKD 85

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 105

 Score = 56.2 bits (136), Expect = 4e-11
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 10/91 (10%)

Query: 87  SGEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDR 136
           SG     +    +    LG S+ GG           GI+V  +  G   + AG L+ GDR
Sbjct: 3   SGSSGRHVACLARSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDR 62

Query: 137 ILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           +L  NG D+  A  + A   L   +  + +L
Sbjct: 63  VLSINGVDVTEARHDHAVSLLTAASPTIALL 93

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens} Length = 88

 Score = 55.4 bits (134), Expect = 4e-11
 Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 97  TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAY 155
            +  +N    L  G+   I+V  +    L    G L  GD IL+ NGT     +  +A  
Sbjct: 7   MKSRANEEYGLRLGS--QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARK 64

Query: 156 ELAKPADKVT 165
            + K   K+ 
Sbjct: 65  LIEKSRGKLQ 74

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 55.9 bits (135), Expect = 4e-11
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 12/93 (12%)

Query: 86  RSGEPRFLMIETRKCSNLGISLVGG----------NAVGIYVHSVQSGSLGYSAG-LRTG 134
            SG+   L++  R   +LG +++GG          ++ GI+V  +         G L+  
Sbjct: 5   SSGKSLTLVLH-RDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIH 63

Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           DRI+E NG DL  AT ++A        + + V 
Sbjct: 64  DRIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQ 96

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens} Length = 97

 Score = 55.7 bits (135), Expect = 4e-11
 Identities = 22/81 (27%), Positives = 37/81 (45%), Gaps = 8/81 (9%)

Query: 95  IETRKCSN-LGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR 146
           +E  K    LGI++ G          GI+V S+   S     G ++ GD+I+  +GT+L+
Sbjct: 8   VELTKNVQGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQ 67

Query: 147 AATAEEAAYELAKPADKVTVL 167
             T ++A   L      V + 
Sbjct: 68  GFTNQQAVEVLRHTGQTVLLT 88

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 119

 Score = 55.9 bits (135), Expect = 5e-11
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 90  PRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
               ++   + + LG SL GG       I VH V    L    G ++ G+ +L  NG  L
Sbjct: 16  IHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSL 75

Query: 146 RAATAEEAAYELAKPADKVTVL 167
           +  T  +A   L +  +    +
Sbjct: 76  KGTTHHDALAILRQAREPRQAV 97

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} Length = 106

 Score = 55.5 bits (134), Expect = 5e-11
 Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 2/79 (2%)

Query: 90  PRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 148
           PR   +  ++  N G  L    +  G  +  ++ GS    AGL  GDR+L  NG  +   
Sbjct: 2   PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKE 61

Query: 149 TAEEAAYELAKPADKVTVL 167
              +   EL + +     L
Sbjct: 62  EHAQVV-ELVRKSGNSVTL 79

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A Length = 97

 Score = 55.4 bits (134), Expect = 6e-11
 Identities = 17/76 (22%), Positives = 34/76 (44%), Gaps = 3/76 (3%)

Query: 94  MIETRKCSN--LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 150
           +I+  K +   +GI L         V  +  G + +  G L  GD ILE NGT++   + 
Sbjct: 15  LIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSV 74

Query: 151 EEAAYELAKPADKVTV 166
           ++    + +    +++
Sbjct: 75  DQLQKAMKETKGMISL 90

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A Length = 102

 Score = 55.4 bits (134), Expect = 6e-11
 Identities = 18/82 (21%), Positives = 31/82 (37%), Gaps = 9/82 (10%)

Query: 95  IETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
           I   + ++ LG S+ GG       +  GI++  +  G      G L   D +L  N  D+
Sbjct: 8   IVLERGNSGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDV 67

Query: 146 RAATAEEAAYELAKPADKVTVL 167
                  A   L +    V ++
Sbjct: 68  SEVVHSRAVEALKEAGPVVRLV 89

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1 Length = 127

 Score = 56.0 bits (135), Expect = 6e-11
 Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 4/83 (4%)

Query: 89  EPRFLMIETRKCSN--LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 144
           EP  + +   K     LG  +    +   + +  +  G     +G ++ GD IL  N   
Sbjct: 6   EPNVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRP 65

Query: 145 LRAATAEEAAYELAKPADKVTVL 167
           L   + + A   L   A +  V+
Sbjct: 66  LVDLSYDSALEVLRGIASETHVV 88

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 55.4 bits (134), Expect = 7e-11
 Identities = 19/68 (27%), Positives = 29/68 (42%), Gaps = 3/68 (4%)

Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK 159
            G S+ GG    + +YV  +         G +R GD+I+E NG   R  T   A   +  
Sbjct: 24  FGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKS 83

Query: 160 PADKVTVL 167
              +V +L
Sbjct: 84  GGRRVRLL 91

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A Length = 97

 Score = 55.0 bits (133), Expect = 7e-11
 Identities = 23/85 (27%), Positives = 36/85 (42%), Gaps = 4/85 (4%)

Query: 87  SGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
           S       +E ++    LGI++ G       I + S+  G L    G +  GDRIL  N 
Sbjct: 1   SSGAIIYTVELKRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINS 60

Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
           + L+     EA + L    + VT+ 
Sbjct: 61  SSLKGKPLSEAIHLLQMAGETVTLK 85

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A Length = 101

 Score = 55.0 bits (133), Expect = 9e-11
 Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 9/82 (10%)

Query: 95  IETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
           I   +  + LG ++VGG       N  GIYV  ++        G L+ GD+IL  NG DL
Sbjct: 11  INLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDL 70

Query: 146 RAATAEEAAYELAKPADKVTVL 167
           +    ++A          V++ 
Sbjct: 71  KNLLHQDAVDLFRNAGYAVSLR 92

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens} Length = 96

 Score = 54.6 bits (132), Expect = 9e-11
 Identities = 19/85 (22%), Positives = 33/85 (38%), Gaps = 5/85 (5%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGGNAV----GIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
           S +PR L +E +     G  L     +    G ++  V  G     AG++ GDR++   G
Sbjct: 1   SMKPRCLHLE-KGPQGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAG 59

Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
             +     EE    +      V++ 
Sbjct: 60  ESVEGLGHEETVSRIQGQGSCVSLT 84

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A Length = 81

 Score = 54.2 bits (131), Expect = 9e-11
 Identities = 17/72 (23%), Positives = 32/72 (44%), Gaps = 5/72 (6%)

Query: 97  TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAY 155
           +RK    G+ L       I+V  +   SL    G ++ GD +L+ NGT     +  +A  
Sbjct: 9   SRKNEEYGLRLASH----IFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKT 64

Query: 156 ELAKPADKVTVL 167
            + +   K+ ++
Sbjct: 65  LIERSKGKLKMV 76

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1 Length = 88

 Score = 54.7 bits (132), Expect = 9e-11
 Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 3/76 (3%)

Query: 94  MIETRKCSN--LGISLVGGNAVGIYVHSVQSGSLGY-SAGLRTGDRILEYNGTDLRAATA 150
           +++ +K ++  +GI+L         V  +  G + +    L  GD I E NG  +   T 
Sbjct: 4   LVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTV 63

Query: 151 EEAAYELAKPADKVTV 166
           E+    L +    +T 
Sbjct: 64  EQLQKMLREMRGSITF 79

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 110

 Score = 55.0 bits (133), Expect = 9e-11
 Identities = 24/86 (27%), Positives = 37/86 (43%), Gaps = 7/86 (8%)

Query: 89  EPRFLMIETRKCSN-LGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
                 +E  +  + LG+ L+ G      A G+Y+ ++  GS   + G L  GDRILE N
Sbjct: 6   SGYVFTVELERGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVN 65

Query: 142 GTDLRAATAEEAAYELAKPADKVTVL 167
           G+ L       A   +     K+  L
Sbjct: 66  GSSLLGLGYLRAVDLIRHGGKKMRFL 91

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} PDB: 3r69_A* Length = 95

 Score = 54.6 bits (132), Expect = 1e-10
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 89  EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
           +PR ++I+ +  +  G  L  G    G  +  ++ GS   +AGL+  D ++  NG  + A
Sbjct: 5   QPRVVVIK-KGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEA 63

Query: 148 ATAEEAAYELAKPADKVTVL 167
              +     + K  D+ T+L
Sbjct: 64  LDHDGVVEMIRKGGDQTTLL 83

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A Length = 129

 Score = 55.2 bits (133), Expect = 1e-10
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 78  RTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRT 133
           +    ++    + +F+  + RK S   G ++VGG      + + S+         G + T
Sbjct: 5   KPFFTRNPSELKGKFIHTKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMET 64

Query: 134 GDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVL 167
           GD I+  N T +   T  +             V + 
Sbjct: 65  GDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVDLE 100

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens} Length = 216

 Score = 56.7 bits (136), Expect = 1e-10
 Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 2/80 (2%)

Query: 89  EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
            PR   ++ +  S  G +L    +  G ++ SV   S   ++GLR  DRI+E NG  +  
Sbjct: 9   RPRLCTMK-KGPSGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEG 67

Query: 148 ATAEEAAYELAKPADKVTVL 167
               +    +    D+  +L
Sbjct: 68  KQHGDVVSAIRAGGDETKLL 87

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B Length = 112

 Score = 54.8 bits (132), Expect = 1e-10
 Identities = 14/67 (20%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 103 LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP 160
           LG  +    +   + +  +  G     +G ++ GD IL  N   L   + + A   L   
Sbjct: 15  LGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGI 74

Query: 161 ADKVTVL 167
           A +  V+
Sbjct: 75  ASETHVV 81

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens} Length = 117

 Score = 54.7 bits (132), Expect = 2e-10
 Identities = 27/92 (29%), Positives = 43/92 (46%), Gaps = 9/92 (9%)

Query: 85  ERSGEPRFLMIETRKCSN--LGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDR 136
             +      + E  K  +  LG S+VG        +GI+V  +Q GS+ +  G L+  D+
Sbjct: 14  NMAQGRHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQ 73

Query: 137 ILEYNGTDL-RAATAEEAAYELAKPADKVTVL 167
           IL  NG  L +  T ++A   L K  D V ++
Sbjct: 74  ILAINGQALDQTITHQQAISILQKAKDTVQLV 105

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 108

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 27/91 (29%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 89  EPRFLMIETRKCSN-LGISLVGGNAV----------GIYVHSVQSGSLGYSAG-LRTGDR 136
                 +E  K  N LGIS+                GIYV +V       S G +  GDR
Sbjct: 7   PGDIFEVELAKNDNSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDR 66

Query: 137 ILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           +L  NG  L  AT ++A   L      V +L
Sbjct: 67  VLAVNGVSLEGATHKQAVETLRNTGQVVHLL 97

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A Length = 111

 Score = 54.6 bits (132), Expect = 2e-10
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 9/84 (10%)

Query: 93  LMIETRKCSN-LGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
           L I+ +K +  LG S+   +     +  IYV ++         G L+ GDR++E NG DL
Sbjct: 13  LNIQLKKGTEGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDL 72

Query: 146 RAATAEEAAYEL--AKPADKVTVL 167
              + EE    L   K    V++L
Sbjct: 73  AGKSQEEVVSLLRSTKMEGTVSLL 96

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens} Length = 104

 Score = 54.0 bits (130), Expect = 2e-10
 Identities = 14/100 (14%), Positives = 35/100 (35%), Gaps = 9/100 (9%)

Query: 77  TRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG---------NAVGIYVHSVQSGSLGY 127
           + +    D    + + + +E +     G  +            + +   +  +Q  S  +
Sbjct: 3   SGSSGLSDFSWSQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAH 62

Query: 128 SAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
            AGL+ GD +   NG      T ++    +    + +T+ 
Sbjct: 63  CAGLQAGDVLANINGVSTEGFTYKQVVDLIRSSGNLLTIE 102

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 123

 Score = 54.3 bits (131), Expect = 2e-10
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 74  STLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG 130
           S+ +     +D    +  FL    +K +   G +++GG      + V SV         G
Sbjct: 2   SSGSSGLFTRDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDG 61

Query: 131 -LRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVL 167
            + TGD I+  N   +   T  +             V ++
Sbjct: 62  KMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQSVNLV 101

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 107

 Score = 53.9 bits (130), Expect = 3e-10
 Identities = 24/91 (26%), Positives = 37/91 (40%), Gaps = 10/91 (10%)

Query: 87  SGEPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDR 136
           S       +E  K  + LGIS++G           +GI+V +V  G      G ++  D+
Sbjct: 5   SSGLELFPVELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQ 64

Query: 137 ILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           I+E +G  L   T   AA  L      V  +
Sbjct: 65  IVEVDGISLVGVTQNFAATVLRNTKGNVRFV 95

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A Length = 94

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 8/73 (10%)

Query: 103 LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 154
           LG S+ GG           IY+  +  G      G L+ GDR+L  N T+L+    EEA 
Sbjct: 16  LGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAV 75

Query: 155 YELAKPADKVTVL 167
             L   +D V + 
Sbjct: 76  ASLKNTSDMVYLK 88

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A Length = 82

 Score = 53.1 bits (128), Expect = 3e-10
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 5/81 (6%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
           + +PR + +      ++G     G      + S+   S     GL T   I E NG ++ 
Sbjct: 2   AMDPRTITMHKDSTGHVGFIFKNGK-----ITSIVKDSSAARNGLLTEHNICEINGQNVI 56

Query: 147 AATAEEAAYELAKPADKVTVL 167
                + A  L+     VT+ 
Sbjct: 57  GLKDSQIADILSTSGTVVTIT 77

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens} Length = 109

 Score = 53.7 bits (129), Expect = 3e-10
 Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 89  EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 148
            PR +   T +  +LG +L G     + VH +        AG R GD I+     D +  
Sbjct: 23  MPRSIRF-TAEEGDLGFTLRGNA--PVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWL 79

Query: 149 TAEEAAYELAKPADKVTV 166
           T  E   +L K   +  +
Sbjct: 80  TLSEVM-KLLKSFGEDEI 96

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens} Length = 90

 Score = 53.0 bits (128), Expect = 3e-10
 Identities = 15/76 (19%), Positives = 31/76 (40%), Gaps = 4/76 (5%)

Query: 95  IETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 150
           I   +     G  ++GG      IY+  +       + G LR+GD ++  +GT +   + 
Sbjct: 6   IFLWRKETGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSH 65

Query: 151 EEAAYELAKPADKVTV 166
           +     + + A +  V
Sbjct: 66  QLVVQLMQQAAKQGHV 81

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1 Length = 109

 Score = 53.6 bits (129), Expect = 4e-10
 Identities = 21/75 (28%), Positives = 35/75 (46%), Gaps = 5/75 (6%)

Query: 85  ERSGEPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILE 139
               +P F +I   K + LG+ ++GG        +Y+H V  G   Y  G L+ GD+++ 
Sbjct: 9   PLDRDPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVS 68

Query: 140 YNGTDLRAATAEEAA 154
            N   +   + EEA 
Sbjct: 69  INKESMIGVSFEEAK 83

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A Length = 128

 Score = 54.1 bits (130), Expect = 4e-10
 Identities = 16/77 (20%), Positives = 32/77 (41%), Gaps = 12/77 (15%)

Query: 103 LGISLVGGNAV-----------GIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 150
           LG  +  G++V           GI++  +  G L  S G L   D +LE NG ++   + 
Sbjct: 44  LGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSL 103

Query: 151 EEAAYELAKPADKVTVL 167
           ++    +   +  + + 
Sbjct: 104 DQVTDMMIANSRNLIIT 120

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} Length = 93

 Score = 52.3 bits (126), Expect = 6e-10
 Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 88  GEPRFLMIETRKCSN-LGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 144
           G     +I   K    LG ++        I V  +  G     +G +  GD + E NG  
Sbjct: 1   GSDSVKIIRLVKNREPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIP 60

Query: 145 LRAATAEEAAYELAKPADKVT 165
           +     EE    LA+    +T
Sbjct: 61  VEDKRPEEIIQILAQSQGAIT 81

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 52.6 bits (127), Expect = 6e-10
 Identities = 25/81 (30%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 144
           SG P    +  R  S  G  LVGG   +  + +  V +GS    A L  GD I   NG  
Sbjct: 6   SGMPHS--VTLRGPSPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGES 63

Query: 145 LRAATAEEAAYELAKPADKVT 165
               T  EA   +    D +T
Sbjct: 64  TELMTHLEAQNRIKGCHDHLT 84

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1 Length = 118

 Score = 52.8 bits (127), Expect = 8e-10
 Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 4/64 (6%)

Query: 94  MIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAAT 149
           ++  +K  +L ++L GG       + V +V  G      G +  GD I+  NG  +   T
Sbjct: 21  LLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYT 80

Query: 150 AEEA 153
             EA
Sbjct: 81  LAEA 84

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 124

 Score = 52.9 bits (127), Expect = 9e-10
 Identities = 18/99 (18%), Positives = 45/99 (45%), Gaps = 9/99 (9%)

Query: 77  TRTHVCKDERSGEPRFLMIETRKCSN---LGISLVGG----NAVGIYVHSVQSGSLGYSA 129
           +   + ++    E     ++  + ++   LG+++       + +GIY+  +   S+    
Sbjct: 5   SSGDIHQEMDREELELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKD 64

Query: 130 G-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           G +R GDRI++ NG +++    E  A   ++     ++L
Sbjct: 65  GRIREGDRIIQINGIEVQNRE-EAVALLTSEENKNFSLL 102

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A Length = 87

 Score = 51.9 bits (125), Expect = 1e-09
 Identities = 16/53 (30%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
            G  + GG      I V  V        A LR GD I+  NG         EA
Sbjct: 14  WGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEA 66

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 113

 Score = 52.5 bits (126), Expect = 1e-09
 Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 17/117 (14%)

Query: 52  SGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGN 111
           SGS  P  +     +S   +   T+    + K                   LG ++    
Sbjct: 3   SGSSGP-ITDERVYESIGHYGGETVKIVRIEKARDIP--------------LGATVRNEM 47

Query: 112 AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
              + +  +  G     +G L  GD +LE NG ++R     E    L+     +T +
Sbjct: 48  -DSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV 103

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 111

 Score = 52.4 bits (126), Expect = 1e-09
 Identities = 29/95 (30%), Positives = 36/95 (37%), Gaps = 14/95 (14%)

Query: 87  SGEPRFLMIETRKCSN--LGISLVGG-----------NAVGIYVHSVQSGSLGYSAG-LR 132
           S  P    +  +K     LGIS+ GG              GI++  V         G LR
Sbjct: 5   SSGPGLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLR 64

Query: 133 TGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
            G R+LE N   L   T  EA   L    D +TVL
Sbjct: 65  VGLRLLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 99

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 103

 Score = 52.3 bits (126), Expect = 1e-09
 Identities = 16/84 (19%), Positives = 30/84 (35%), Gaps = 4/84 (4%)

Query: 87  SGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
           S   + L +  R+  +  G  ++GG      I + +V +       G L  GD ++  +G
Sbjct: 5   SSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDG 64

Query: 143 TDLRAATAEEAAYELAKPADKVTV 166
             +   T       +   A    V
Sbjct: 65  IPVAGKTHRYVIDLMHHAARNGQV 88

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A Length = 96

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 16/90 (17%), Positives = 28/90 (31%), Gaps = 9/90 (10%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG---------NAVGIYVHSVQSGSLGYSAGLRTGDRI 137
           S + + L +E       G  +              +  +V  V   S    AGL  GD I
Sbjct: 2   SQQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTI 61

Query: 138 LEYNGTDLRAATAEEAAYELAKPADKVTVL 167
              NG ++      E    +    + + + 
Sbjct: 62  ASVNGLNVEGIRHREIVDIIKASGNVLRLE 91

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A Length = 108

 Score = 52.0 bits (125), Expect = 1e-09
 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 5/57 (8%)

Query: 103 LGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 154
           LGIS+VG        GIY+ S+  G    + G +  GD +L+ N  +    + ++A 
Sbjct: 19  LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAV 75

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 102

 Score = 51.6 bits (124), Expect = 2e-09
 Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 2/80 (2%)

Query: 89  EPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
             R ++I+ +  +  G  L  G    G  +  ++ GS   +AGL+  D ++  NG  + A
Sbjct: 6   SGRVVVIK-KGSNGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEA 64

Query: 148 ATAEEAAYELAKPADKVTVL 167
              +     + K  D+ T+L
Sbjct: 65  LDHDGVVEMIRKGGDQTTLL 84

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 120

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 23/93 (24%), Positives = 36/93 (38%), Gaps = 9/93 (9%)

Query: 84  DERSGEPRFLMIETRKCSN-LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTG 134
                      I   +  + LG ++VGG       N  GIYV  ++        G L+ G
Sbjct: 10  GRVDYLVTEEEINLTRGPSGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEG 69

Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           D+IL  NG DL+    ++A          V++ 
Sbjct: 70  DKILSVNGQDLKNLLHQDAVDLFRNAGYAVSLR 102

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1 Length = 100

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 2/85 (2%)

Query: 83  KDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNG 142
           + +     +  +   R     G ++   +   + V +V SG     AGL+  D +L+ N 
Sbjct: 8   EGDPENGEKLQITIRRGKDGFGFTICCDS--PVRVQAVDSGGPAERAGLQQLDTVLQLNE 65

Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
             +      E A+E+     ++ +L
Sbjct: 66  RPVEHWKCVELAHEIRSCPSEIILL 90

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 94

 Score = 51.1 bits (123), Expect = 2e-09
 Identities = 18/69 (26%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 144
           S     L ++    +  G  + GG      I V  V       +A LR GD I+  NG  
Sbjct: 2   SSGSSGLTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQS 61

Query: 145 LRAATAEEA 153
                  EA
Sbjct: 62  AENMLHAEA 70

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A Length = 103

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 11/90 (12%)

Query: 88  GEPRFLMIETRKCSNLGISLVGG----------NAVGIYVHSVQSGSLGYSAGLRTGDRI 137
              + + +   K   LG S+ GG          +  GI+V  VQ         L+ GD+I
Sbjct: 8   LAKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKI 66

Query: 138 LEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           ++ NG         +A   L    + V ++
Sbjct: 67  IQANGYSFINIEHGQAVSLLKTFQNTVELI 96

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus} Length = 85

 Score = 50.7 bits (122), Expect = 2e-09
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 6/79 (7%)

Query: 95  IETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATA 150
            + RK S   G ++VGG      + + S+         G + TGD I+  N T +   T 
Sbjct: 4   TKLRKSSRGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTH 63

Query: 151 EEAAYEL--AKPADKVTVL 167
            +             V + 
Sbjct: 64  AQVVKIFQSIPIGASVDLE 82

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens} Length = 88

 Score = 50.7 bits (122), Expect = 2e-09
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 2/55 (3%)

Query: 101 SNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
           +  G  L GG    + + + S++ G     A +R GD +L  +G + +  T  EA
Sbjct: 13  APWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEA 67

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 51.1 bits (123), Expect = 2e-09
 Identities = 14/70 (20%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 103 LGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL 157
            G++L GG        + V  +         G L  GD +L  NG   +  T  +A   +
Sbjct: 24  FGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERI 83

Query: 158 AKPADKVTVL 167
                ++ ++
Sbjct: 84  RAGGPQLHLV 93

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A Length = 85

 Score = 50.3 bits (121), Expect = 3e-09
 Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 2/53 (3%)

Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
            G  L GG    + + +  +  GS    + L  GD ++  +G +    T  EA
Sbjct: 13  WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEA 65

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus} Length = 263

 Score = 53.2 bits (127), Expect = 3e-09
 Identities = 35/145 (24%), Positives = 52/145 (35%), Gaps = 11/145 (7%)

Query: 33  ELEGSGSSSAENESVS------GRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTHVCKDER 86
           EL     S A  E            + + +P +          Q N +        +   
Sbjct: 13  ELRCGAGSGAGGERWQRVLLSLAEDALTVSPADGEPGPEPEPAQLNGAAEPGAAPPQLPE 72

Query: 87  SGEPRFLMIETRKCSN--LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
           +   +   +  RK     LGIS+ GG  N + I +  +  G        L  GD IL  N
Sbjct: 73  ALLLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVN 132

Query: 142 GTDLRAATAEEAAYELAKPADKVTV 166
           G DL +AT +EA   L K   +V +
Sbjct: 133 GEDLSSATHDEAVQALKKTGKEVVL 157

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens} Length = 89

 Score = 50.4 bits (121), Expect = 4e-09
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)

Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
            G  L GG    V + +  +  G     AG+  GD +L  +G +  + T  EA
Sbjct: 15  WGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEA 67

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A Length = 107

 Score = 50.8 bits (122), Expect = 4e-09
 Identities = 16/92 (17%), Positives = 26/92 (28%), Gaps = 9/92 (9%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTGD 135
                E   + +        GI++ GG            I +  V  G       L+  D
Sbjct: 2   SHMIWEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQEND 60

Query: 136 RILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           R+   NG  +       A  +L K      + 
Sbjct: 61  RVAMVNGVSMDNVEHAFAVQQLRKSGKNAKIT 92

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2 Length = 130

 Score = 51.3 bits (123), Expect = 4e-09
 Identities = 23/100 (23%), Positives = 38/100 (38%), Gaps = 10/100 (10%)

Query: 61  PGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG-----NAVG 114
           P  N  +    + S  +   V       E     +   K S  LG SL GG         
Sbjct: 2   PDLNSSTDSAASASAASDVSVESTA---EATVCTVTLEKMSAGLGFSLEGGKGSLHGDKP 58

Query: 115 IYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEA 153
           + ++ +  G+    +  ++ GD IL+  GT ++  T  EA
Sbjct: 59  LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEA 98

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A Length = 127

 Score = 51.0 bits (122), Expect = 4e-09
 Identities = 20/100 (20%), Positives = 39/100 (39%), Gaps = 10/100 (10%)

Query: 62  GTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG------NAVGI 115
           G++  S ++        +    +        + +     + LG+SL G         +GI
Sbjct: 1   GSSGSSGLKGEPDCYALSL---ESSEQLTLEIPLNDSGSAGLGVSLKGNKSRETGTDLGI 57

Query: 116 YVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 154
           ++ S+  G   +  G LR  D+++  NG  L   +  EA 
Sbjct: 58  FIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAM 97

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 114

 Score = 50.5 bits (121), Expect = 5e-09
 Identities = 17/93 (18%), Positives = 29/93 (31%), Gaps = 12/93 (12%)

Query: 87  SGEPRFLMIETRKCSN--LGISLVGG---------NAVGIYVHSVQSGSLGYSAG-LRTG 134
           SG  +   +   +  N   G  ++             V   +  +  GS       L+ G
Sbjct: 6   SGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVG 65

Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           DRIL  NG  +      +    +      VT+ 
Sbjct: 66  DRILAVNGQSIINMPHADIVKLIKDAGLSVTLR 98

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A Length = 95

 Score = 50.1 bits (120), Expect = 5e-09
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 11/83 (13%)

Query: 95  IETRKCSNLGISLVGG----------NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 144
           +   K   LG S+ GG          +  GI+V  VQ         L+ GD+I++ NG  
Sbjct: 7   VRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYS 65

Query: 145 LRAATAEEAAYELAKPADKVTVL 167
                  +A   L    + V ++
Sbjct: 66  FINIEHGQAVSLLKTFQNTVELI 88

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5 Length = 105

 Score = 50.3 bits (120), Expect = 5e-09
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 109 GGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
               +G  V   +   L  S GL+ GD  +  NG DL         ++      ++++
Sbjct: 33  DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSL 90

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5 Length = 87

 Score = 49.8 bits (119), Expect = 5e-09
 Identities = 12/58 (20%), Positives = 22/58 (37%)

Query: 109 GGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
               +G  V   +   L  S GL+ GD  +  NG DL         ++      ++++
Sbjct: 15  DDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSL 72

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens} Length = 101

 Score = 50.1 bits (120), Expect = 5e-09
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 5/83 (6%)

Query: 89  EPRFLMIETRKCSNLGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
             R + +E R+   LG++LV            + ++  G     +G L  GDR+   NGT
Sbjct: 9   NCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGT 68

Query: 144 DLRAATAEEAAYELAKPADKVTV 166
            L           + +   + +V
Sbjct: 69  SLVGLPLAACQAAVRETKSQTSV 91

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A* Length = 91

 Score = 49.7 bits (119), Expect = 7e-09
 Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 2/53 (3%)

Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
            G  LVGG      + +  V  GS    A L  GD I   +G +    T  EA
Sbjct: 15  WGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEA 67

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens} Length = 128

 Score = 50.5 bits (121), Expect = 9e-09
 Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 7/72 (9%)

Query: 103 LGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL-RAATAEEAAY 155
           LG S+V         V I+V  VQ GS+      L+  D+IL  N T L +  + ++A  
Sbjct: 39  LGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIA 98

Query: 156 ELAKPADKVTVL 167
            L +    + ++
Sbjct: 99  LLQQTTGSLRLI 110

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} PDB: 3nfl_A 2vph_A Length = 107

 Score = 49.8 bits (119), Expect = 9e-09
 Identities = 13/71 (18%), Positives = 28/71 (39%), Gaps = 4/71 (5%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSA--GLRTGDRILEYNG 142
                 + ++  +    G ++ GG    + + V  V  G+        L  GD+++  NG
Sbjct: 15  HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 74

Query: 143 TDLRAATAEEA 153
            D+   T ++ 
Sbjct: 75  RDIAEHTHDQV 85

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 129

 Score = 50.1 bits (120), Expect = 1e-08
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 8/92 (8%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGD 135
           D    E   + +  +   +LGI +VG         A GIYV SV  GS  Y  G ++  D
Sbjct: 10  DSSLFETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVND 69

Query: 136 RILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           +I+  +G +++     +    L      V + 
Sbjct: 70  KIVAVDGVNIQGFANHDVVEVLRNAGQVVHLT 101

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 114

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 103 LGISLVGGNAVG---IYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK 159
            G SL      G   +YV+SV+   L    GL+ GD ILE N     A  +      L++
Sbjct: 31  YGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ 90

Query: 160 PADKVTV 166
           P+  + V
Sbjct: 91  PSLGLLV 97

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 96

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 87  SGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
           SG+   + +   K +   G ++      G  V  +         GL  GD I+E N  ++
Sbjct: 6   SGQAELMTLTIVKGAQGFGFTIADS-PTGQRVKQILDI--QGCPGLCEGDLIVEINQQNV 62

Query: 146 RAATAEEAA 154
           +  +  E  
Sbjct: 63  QNLSHTEVV 71

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A Length = 94

 Score = 49.2 bits (117), Expect = 1e-08
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 3/67 (4%)

Query: 103 LGISLVGGNAVG---IYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK 159
            G SL      G   +YV+SV+   L    GL+ GD ILE N     A  +      L++
Sbjct: 22  YGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ 81

Query: 160 PADKVTV 166
           P+  + V
Sbjct: 82  PSLGLLV 88

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 49.3 bits (118), Expect = 1e-08
 Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 101 SNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA 153
           +  G  L GG    + + + S++ G     A +R GD +L  +G   +  T  EA
Sbjct: 15  APWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEA 69

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 52.3 bits (124), Expect = 1e-08
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 5/95 (5%)

Query: 72  NTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGL 131
                T+  +           L+        LG S+  G      + S+  G +    G+
Sbjct: 279 GLKNQTQVKLNIVSCPPVTTVLIKRPDLKYQLGFSVQNG-----IICSLMRGGIAERGGV 333

Query: 132 RTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
           R G RI+E NG  + A   E+    L+    ++ +
Sbjct: 334 RVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHM 368

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A Length = 388

 Score = 45.0 bits (105), Expect = 3e-06
 Identities = 21/117 (17%), Positives = 41/117 (35%), Gaps = 5/117 (4%)

Query: 55  PTPCNSPGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGGN--- 111
                   + ++ S   NT  +    +     S   + L +E  K   LG+ +V      
Sbjct: 170 NGINPEDLSQKEYSDIINTQEMYNDDLIHFSNSENCKELQLEKHKGEILGVVVVESGWGS 229

Query: 112 -AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
               + + ++ +G     +G L  GD+I+  NGT L           +    ++  V
Sbjct: 230 ILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQTQV 286

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1 Length = 117

 Score = 49.4 bits (118), Expect = 1e-08
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTGD 135
           +E   E   + ++       GI++ GG            I +  V  G       L+  D
Sbjct: 9   EEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA-DGLLQEND 67

Query: 136 RILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           R++  NGT +       A  +L K      ++
Sbjct: 68  RVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIV 99

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 122

 Score = 49.5 bits (118), Expect = 2e-08
 Identities = 19/87 (21%), Positives = 33/87 (37%), Gaps = 7/87 (8%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILE 139
             E   +++     +  GI L G        +    +  +++ S     G L+ GDR++ 
Sbjct: 13  HTETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMA 72

Query: 140 YNGTDLRAATAEEAAYELAKPADKVTV 166
            NG     +T EEA   L   +    V
Sbjct: 73  INGIPTEDSTFEEANQLLRDSSITSKV 99

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A* Length = 109

 Score = 49.1 bits (117), Expect = 2e-08
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 14/93 (15%)

Query: 89  EPRFLMIETRKCSNLGISLVGG--------------NAVGIYVHSVQSGSLGYSAGLRTG 134
           + + ++++ +     G  L G                    Y+ SV  G + + AGLR G
Sbjct: 7   KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG 66

Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           D ++E NG ++      +    + +  + + V 
Sbjct: 67  DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 99

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1 Length = 103

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP 160
            G  L GG      + +  +  GS   +A L  GD IL  +G    + T  +A   +   
Sbjct: 17  WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76

Query: 161 ADKVTVL 167
           + ++ + 
Sbjct: 77  SYQLCLK 83

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens} Length = 88

 Score = 48.0 bits (115), Expect = 2e-08
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 4/66 (6%)

Query: 90  PRFLMIETRKCSN-LGISLVGGNAV-GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
              + +   K     G ++       G  V  +       S GL+ GD I+E N  +++A
Sbjct: 2   MELITVHIVKGPMGFGFTIADSPGGGGQRVKQIVDS--PRSRGLKEGDLIVEVNKKNVQA 59

Query: 148 ATAEEA 153
            T  + 
Sbjct: 60  LTHNQV 65

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1 Length = 111

 Score = 48.3 bits (115), Expect = 4e-08
 Identities = 20/83 (24%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 85  ERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTD 144
           +R   PR +   T +  +LG +L G     + VH +        AG + GD I+   G D
Sbjct: 11  KRWSPPRGIHF-TVEEGDLGFTLRGNT--PVQVHFLDPHCSASLAGAKEGDYIVSIQGVD 67

Query: 145 LRAATAEEAAYELAKPADKVTVL 167
            +  T  E    L     +   +
Sbjct: 68  CKWLTVSEVMKLLKSFGGEEVEM 90

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1 Length = 126

 Score = 47.9 bits (114), Expect = 6e-08
 Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 67  SSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSL 125
           S    + +   +    K   S   + +  +    +  LG+ ++      + +  + +   
Sbjct: 3   SGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNGP-YLQISHLINKGA 61

Query: 126 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVL 167
             S G L+ GD ++     ++   T  E    L        + + 
Sbjct: 62  AASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK 106

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 47.4 bits (113), Expect = 7e-08
 Identities = 16/81 (19%), Positives = 31/81 (38%), Gaps = 2/81 (2%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
           SG    + I+ +             ++ + V +V +G       L  GD+IL+ N     
Sbjct: 6   SGVRHTVKID-KDTLLQDYGFHISESLPLTVVAVTAGGSA-HGKLFPGDQILQMNNEPAE 63

Query: 147 AATAEEAAYELAKPADKVTVL 167
             + E A   L +  D +++ 
Sbjct: 64  DLSWERAVDILREAEDSLSIT 84

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens} Length = 113

 Score = 47.5 bits (113), Expect = 8e-08
 Identities = 15/84 (17%), Positives = 25/84 (29%), Gaps = 6/84 (7%)

Query: 87  SGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
                 + I   K     G ++      G  V  +         GL+ GD I E    ++
Sbjct: 8   KKAGLLVTIPLIKGPKGFGFAIADS-PTGQKVKMILDSQW--CQGLQKGDIIKEIYHQNV 64

Query: 146 RAATAEEAAYEL--AKPADKVTVL 167
           +  T  +    L        V +L
Sbjct: 65  QNLTHLQVVEVLKQFPVGADVPLL 88

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens} Length = 108

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 21/86 (24%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 89  EPRFLMIETRKCSN-LGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
            P   ++E  K    LG S++            I + S+ +  +   +G L  GDR++  
Sbjct: 13  SPEVKIVELVKDCKGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSV 72

Query: 141 NGTDLRAATAEEAAYEL-AKPADKVT 165
           N   L   +  EA   L A P   V 
Sbjct: 73  NEYCLDNTSLAEAVEILKAVPPGLVH 98

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus} Length = 132

 Score = 47.3 bits (112), Expect = 1e-07
 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 16/117 (13%)

Query: 67  SSIQHNTSTLTRTHVCKDERSG--EPRFLMIETRKCSNLGISLVGG-------------- 110
           SS  H+  +               + + ++++ +     G  L G               
Sbjct: 3   SSHHHHHHSQDPLVPRGSGSDYIIKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPA 62

Query: 111 NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
                Y+ SV  G + + AGLR GD ++E NG ++      +    + +  + + V 
Sbjct: 63  FPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 119

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens} Length = 95

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 13/81 (16%), Positives = 31/81 (38%), Gaps = 4/81 (4%)

Query: 88  GEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
           G  +   +   K  + LG+++        ++  ++ G +  S   +  GD I   NG ++
Sbjct: 4   GIEK--EVNVYKSEDSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENI 61

Query: 146 RAATAEEAAYELAKPADKVTV 166
                 + A +L +   +   
Sbjct: 62  VGWRHYDVAKKLKELKKEELF 82

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A Length = 99

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 22/87 (25%), Positives = 31/87 (35%), Gaps = 9/87 (10%)

Query: 90  PRFLMIETRKCSNLGISLVGG---------NAVGIYVHSVQSGSLGYSAGLRTGDRILEY 140
            R  ++        G SL              V   V SV+ GS    AGLR GD I   
Sbjct: 2   MRPPIVIHSSGKKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHI 61

Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
           NG  +      +    L K  +K+++ 
Sbjct: 62  NGESVLGLVHMDVVELLLKSGNKISLR 88

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 119

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 13/83 (15%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSA--GLRTGDRILEYNG 142
                 + ++  +    G ++ GG    + + V  V  G+        L  GD+++  NG
Sbjct: 13  HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 72

Query: 143 TDLRAATAEEAAYELAKPADKVT 165
            D+   T ++    +    ++ +
Sbjct: 73  RDIAEHTHDQVVLFIKASCERHS 95

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 46.2 bits (110), Expect = 2e-07
 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 3/71 (4%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSL-GYSAGLRTGDRILEY 140
               G  +++ ++ +  +  G +L GG  +   + V  ++ G     S  +RTGD ++  
Sbjct: 4   GSSGGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNI 63

Query: 141 NGTDLRAATAE 151
           NGT L  +  E
Sbjct: 64  NGTPLYGSRQE 74

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1 Length = 90

 Score = 45.9 bits (109), Expect = 2e-07
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 5/65 (7%)

Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPAD 162
           LG S+  G      + S+  G +    G+R G RI+E NG  + A   E+  + L+    
Sbjct: 26  LGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVG 80

Query: 163 KVTVL 167
           ++ + 
Sbjct: 81  EIHMK 85

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 126

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 15/54 (27%), Positives = 25/54 (46%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
            I+V  V+ G   + AGL TGDRI++ NG  +   T  +    +      + + 
Sbjct: 62  TIFVKQVKEGGPAFEAGLCTGDRIIKVNGESVIGKTYSQVIALIQNSDTTLELS 115

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 91

 Score = 43.6 bits (103), Expect = 1e-06
 Identities = 16/84 (19%), Positives = 28/84 (33%), Gaps = 5/84 (5%)

Query: 87  SGEPRFLMIETRKCSN--LGISLVGGNAVGIYVHSVQSGSLGY-SAGLRTGDRILEYNGT 143
           S      M+  RK +   LG++        + +  +  G +      L  GD I E NG 
Sbjct: 2   SSGSSGRMVGIRKTAGEHLGVTFRVEGG-ELVIARILHGGMVAQQGLLHVGDIIKEVNGQ 60

Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
            +  +        L   +  V + 
Sbjct: 61  PVG-SDPRALQELLRNASGSVILK 83

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR} Length = 597

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 1/60 (1%)

Query: 108 VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
              +  G+ V +V      Y AGL  GD+I+  +       + +        P D VT+ 
Sbjct: 491 YKASPQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQSVKRILERY-IPGDTVTIH 549

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis} Length = 91

 Score = 41.5 bits (98), Expect = 8e-06
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 1/53 (1%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
           GIY  SV          +  GD+I+  +G + ++A          K  DKVT+
Sbjct: 2   GIYASSVVENM-PAKGKIEVGDKIISADGKNYQSAEKLIDYISSKKAGDKVTL 53

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A Length = 324

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 14/65 (21%), Positives = 27/65 (41%), Gaps = 1/65 (1%)

Query: 103 LGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPA 161
           LG+ +      +G  +  V +G    +AG+  G  + + +   + +A A  AA     P 
Sbjct: 231 LGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPG 290

Query: 162 DKVTV 166
             V +
Sbjct: 291 ATVAL 295

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans} Length = 94

 Score = 41.5 bits (98), Expect = 9e-06
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTV 166
           G+YV SV       +  L  GDRI   +G  +   T+E+    +   +  D+V V
Sbjct: 6   GVYVMSVLPNM-PAAGRLEAGDRIAAIDGQPIN--TSEQIVSYVREKQAGDRVRV 57

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae} Length = 134

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 13/59 (22%), Positives = 21/59 (35%), Gaps = 13/59 (22%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGT------DLRAATAEEAAYELAKPADKVTV 166
           G+ V SVQS     +  L   D I + +        DL++A             D + +
Sbjct: 58  GVIVRSVQSNM-PANGHLEKYDVITKVDDKEIASSTDLQSALYN------HSIGDTIKI 109

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4 Length = 113

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 3/53 (5%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
           G+ +H V  GS  + AGLR GD IL      ++ A   E  YE  +   ++ V
Sbjct: 36  GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA---EDVYEAVRTQSQLAV 85

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens} Length = 112

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 16/54 (29%), Positives = 24/54 (44%), Gaps = 1/54 (1%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           GIYV  V   S     G++ GD I++ NG  L  ++  + A     P   + V 
Sbjct: 36  GIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDSSELQEAVLTESPL-LLEVR 88

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1 Length = 325

 Score = 40.7 bits (96), Expect = 8e-05
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 3/53 (5%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
           G+ +H V  GS  + AGLR GD IL      ++ A      YE  +   ++ V
Sbjct: 257 GVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNAE---DVYEAVRTQSQLAV 306

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} Length = 209

 Score = 40.5 bits (94), Expect = 8e-05
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)

Query: 101 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLR-TGDRILEYNGTDLRAATAEEAAYELAK 159
           S+  + + GG   G +V  VQ  S G+ AGL    D I+  NG+ L            A 
Sbjct: 4   SSQSVEIPGGGTEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKAN 63

Query: 160 PADKVTVLAHSD 171
               V +L +S 
Sbjct: 64  VEKPVKMLIYSS 75

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6 Length = 125

 Score = 39.1 bits (91), Expect = 1e-04
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
           G+ + SV  GS      L  G  I   NG      T   AA +     + + +
Sbjct: 26  GVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINI 77

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A Length = 100

 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
           G+YV SV+         L  GD I E +G   +++          K  D V +
Sbjct: 8   GVYVMSVKDDVPAADV-LHAGDLITEIDGNAFKSSQEFIDYIHSKKVGDTVKI 59

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 3nwu_A 2ytw_A 2joa_A Length = 332

 Score = 38.8 bits (91), Expect = 4e-04
 Identities = 10/36 (27%), Positives = 17/36 (47%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAAT 149
           G Y+  V   +   + GL+  D I+  NG  + +A 
Sbjct: 255 GAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAN 290

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A Length = 91

 Score = 35.9 bits (83), Expect = 9e-04
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 117 VHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
           + +VQ  S    AGL+ GDRI+  +G  L 
Sbjct: 8   LENVQPNSAASXAGLQAGDRIVXVDGQPLT 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	99.78
2ehr_A	117	INAD-like protein; PDZ domain, inadl protein, hina	99.74
4e34_A	87	Golgi-associated PDZ and coiled-coil motif-contai	99.73
1qav_A	90	Alpha-1 syntrophin (residues 77-171); beta-finger,	99.73
3l4f_D	132	SH3 and multiple ankyrin repeat domains protein 1;	99.73
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	99.73
3b76_A	118	E3 ubiquitin-protein ligase LNX; PDZ, bound ligand	99.72
2iwo_A	120	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.72
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	99.72
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	99.71
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	99.71
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	99.71
2ego_A	96	General receptor for phosphoinositides 1- associat	99.71
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	99.71
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.71
1m5z_A	91	GRIP, AMPA receptor interacting protein; six beta-	99.71
1wi2_A	104	Riken cDNA 2700099C19; structural genomics, riken	99.71
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	99.7
2awx_A	105	Synapse associated protein 97; membrane protein, s	99.7
2fe5_A	94	Presynaptic protein SAP102; PDZ domain, DLG3, huma	99.7
1ujd_A	117	KIAA0559 protein; PDZ domain, structural genomics,	99.7
1uhp_A	107	Hypothetical protein KIAA1095; PDZ domain, semapho	99.7
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.7
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	99.7
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	99.7
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	99.7
2jik_A	101	Synaptojanin-2 binding protein; transmembrane, out	99.69
1d5g_A	96	Human phosphatase HPTP1E; protein-peptide complex,	99.69
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	99.69
1i16_A	130	Interleukin 16, LCF; cytokine, lymphocyte chemoatt	99.69
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	99.69
2d92_A	108	INAD-like protein; PDZ domain, inadl protein, hina	99.69
3qe1_A	107	Sorting nexin-27, G protein-activated inward RECT	99.69
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	99.69
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	99.69
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	99.68
2opg_A	98	Multiple PDZ domain protein; structural protein, s	99.68
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	99.68
2fne_A	117	Multiple PDZ domain protein; structural protein, s	99.68
2db5_A	128	INAD-like protein; PDZ domain, hinadl, PALS1- asso	99.68
2ejy_A	97	55 kDa erythrocyte membrane protein; GPC, maguk, P	99.68
2h2b_A	107	Tight junction protein ZO-1; PDZ domain, phage der	99.68
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	99.68
2byg_A	117	Channel associated protein of synapse-110; DLG2, P	99.68
2q9v_A	90	Membrane-associated guanylate kinase, WW and PDZ c	99.68
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	99.68
3nfk_A	107	Tyrosine-protein phosphatase non-receptor type 4;	99.68
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	99.68
2djt_A	104	Unnamed protein product; PDZ domain, structural ge	99.67
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	99.67
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	99.67
1ihj_A	98	INAD; intermolecular disulfide bond, PDZ domain, s	99.67
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	99.67
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	99.67
4amh_A	106	Disks large homolog 1; permutation, protein foldin	99.67
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	99.67
1wf8_A	107	Neurabin-I; PDZ domain, structural genomics, NPPSF	99.67
2r4h_A	112	Membrane-associated guanylate kinase, WW and PDZ c	99.67
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	99.67
1va8_A	113	Maguk P55 subfamily member 5; PDZ domain, palmitoy	99.67
2d90_A	102	PDZ domain containing protein 1; structural genomi	99.67
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	99.67
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	99.67
2o2t_A	117	Multiple PDZ domain protein; structural protein, s	99.66
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	99.66
1q3o_A	109	Shank1; PDZ, GKAP, peptide binding protein; 1.80A	99.66
1uju_A	111	Scribble; PDZ domain, cellular signaling, structur	99.66
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	99.66
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	99.66
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	99.66
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	99.66
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	99.66
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	99.66
2yt7_A	101	Amyloid beta A4 precursor protein-binding family A	99.66
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	99.66
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	99.66
1x5q_A	110	LAP4 protein; PDZ domain, scribble homolog protein	99.65
1wi4_A	109	Synip, syntaxin binding protein 4; syntaxin4-inter	99.65
2i04_A	85	Membrane-associated guanylate kinase, WW and PDZ d	99.65
2w4f_A	97	Protein LAP4; structural protein, phosphoprotein,	99.65
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	99.65
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	99.65
2fcf_A	103	Multiple PDZ domain protein; adaptor molecule, pro	99.65
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	99.65
1nf3_C	128	PAR-6B; semi-CRIB motif, switch I and II, PDZ doma	99.65
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	99.64
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	99.64
1mfg_A	95	ERB-B2 interacting protein; PDZ domain, protein-pe	99.64
2daz_A	124	INAD-like protein; PDZ domain, inadl protein, hina	99.64
2eeg_A	94	PDZ and LIM domain protein 4; PDZ domain, structur	99.64
1wg6_A	127	Hypothetical protein (riken cDNA 2810455B10); stru	99.64
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	99.63
2jre_A	108	C60-1 PDZ domain peptide; de novo protein; NMR {Sy	99.63
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.63
1q7x_A	108	PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, str	99.63
3egg_C	170	Spinophilin; PP1, serine/threonine phosphatase, po	99.63
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	99.63
1ufx_A	103	KIAA1526 protein; PDZ domain, structural genomics,	99.63
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.62
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	99.62
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	99.62
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	99.62
2iwq_A	123	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.62
1n7t_A	103	99-MER peptide of densin-180-like protein; PDZ dom	99.62
2eeh_A	100	PDZ domain-containing protein 7; structural genomi	99.61
1wfg_A	131	Regulating synaptic membrane exocytosis protein 2;	99.61
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	99.61
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	99.61
2e7k_A	91	Maguk P55 subfamily member 2; PDZ domain, MPP2 pro	99.61
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	99.61
3khf_A	99	Microtubule-associated serine/threonine-protein ki	99.61
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	99.6
3k1r_A	192	Harmonin; protein-protein complex, alternative spl	99.6
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	99.6
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	99.6
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	99.6
2gzv_A	114	PRKCA-binding protein; protein kinase C, PDZ domai	99.6
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	99.6
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	99.6
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	99.59
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	99.58
2edp_A	100	Fragment, shroom family member 4; APX/shroom famil	99.58
2vsv_A	109	Rhophilin-2; scaffold protein, RHO GTPase binding,	99.58
2jxo_A	98	Ezrin-radixin-moesin-binding phosphoprotein 50; nh	99.58
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	99.58
3tsv_A	124	Tight junction protein ZO-1; PDZ, scaffolding, JAM	99.58
2iwn_A	97	Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUP	99.58
2z17_A	104	Pleckstrin homology SEC7 and coiled-coil domains-	99.58
2xkx_A	721	Disks large homolog 4; structural protein, scaffol	99.57
3gsl_A	196	Disks large homolog 4; PDZ domain, tandem, PSD-95,	99.57
2lob_A	112	Golgi-associated PDZ and coiled-coil motif-contai	99.34
1whd_A	100	RGS3, regulator of G-protein signaling 3; PDZ doma	99.57
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	99.56
2yuy_A	126	RHO GTPase activating protein 21; PDZ domain, stru	99.56
2kom_A	121	Partitioning defective 3 homolog; PAR-3B, PDZ doma	99.55
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	99.55
1y7n_A	90	Amyloid beta A4 precursor protein-binding family A	99.54
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	99.54
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	99.54
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.54
2qt5_A	200	Glutamate receptor-interacting protein 1; PDZ-pept	99.54
1v6b_A	118	Harmonin isoform A1; structural genomics, usher sy	99.54
2vz5_A	139	TAX1-binding protein 3; WNT signaling pathway, pro	99.54
3r0h_A	206	INAD, inactivation-NO-after-potential D protein; p	99.53
1uez_A	101	KIAA1526 protein; PDZ domain, structural genomics,	99.53
1x5n_A	114	Harmonin; PDZ domain, usher syndrome 1C protein, a	99.53
3sfj_A	104	TAX1-binding protein 3; PDZ:peptide complex, signa	99.53
1qau_A	112	Neuronal nitric oxide synthase (residues 1-130); b	99.52
3kzd_A	94	TIAM-1, T-lymphoma invasion and metastasis-inducin	99.51
2kjd_A	128	Sodium/hydrogen exchange regulatory cofactor NHE-	99.5
3shw_A	468	Tight junction protein ZO-1; PDZ-SH3-GUK supramodu	99.5
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	99.49
2d8i_A	114	T-cell lymphoma invasion and metastasis 1 variant;	99.49
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	99.48
1b8q_A	127	Protein (neuronal nitric oxide synthase); PDZ doma	99.48
1p1d_A	196	PDZ45, glutamate receptor interacting protein; PDZ	99.48
1uf1_A	128	KIAA1526 protein; PDZ domain, structural genomics,	99.47
3tsz_A	391	Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol	99.46
1vae_A	111	Rhophilin 2, rhophilin, RHO GTPase binding protein	99.46
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	99.44
2eaq_A	90	LIM domain only protein 7; conserved hypothetical	99.43
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	99.4
2krg_A	216	Na(+)/H(+) exchange regulatory cofactor NHE-RF1; a	99.4
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.4
3qik_A	101	Phosphatidylinositol 3,4,5-trisphosphate-dependen	99.35
2yub_A	118	LIMK-2, LIM domain kinase 2; PDZ domain, structura	99.34
1wh1_A	124	KIAA1095 protein; PDZ domain, structural genomics,	99.32
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.25
3suz_A	388	Amyloid beta A4 precursor protein-binding family 2	99.25
1w9e_A	166	Syntenin 1; cell adhesion, adhesion/complex, PDZ d	99.21
3i18_A	100	LMO2051 protein; alpha-beta protein, structural ge	98.91
2l97_A	134	HTRA, putative serine protease; HTRA-PDZ, protein	98.9
2kl1_A	94	YLBL protein; structure genomics, structural genom	98.87
2kjp_A	91	Uncharacterized protein YLBL; mixed alpha-beta pro	98.85
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.84
2pzd_A	113	Serine protease HTRA2; PDZ domain, apoptosis, mito	98.84
3id1_A	95	Regulator of sigma E protease; hydrolase, cell inn	98.82
3rle_A	209	Golgi reassembly-stacking protein 2; PDZ, tether,	98.82
1fc6_A	388	Photosystem II D1 protease; D1 C-terminal processi	98.81
2i6v_A	87	General secretion pathway protein C; EPSC, GSPC, P	98.8
2p3w_A	112	Probable serine protease HTRA3; PDZ domain, phage	98.74
2i4s_A	105	General secretion pathway protein C; EPSC, GSPC, P	98.74
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.72
1y8t_A	324	Hypothetical protein RV0983; serine protease, stru	98.72
2zpm_A	91	Regulator of sigma E protease; metalloproteinase,	98.69
1te0_A	318	Protease DEGS; two domains, serine protease, PDZ,	98.67
3k50_A	403	Putative S41 protease; structural genomics, joint	98.67
2hga_A	125	Conserved protein MTH1368; GFT structural genomics	98.65
3stj_A	345	Protease DEGQ; serine protease, PDZ domain, protea	98.63
4a8c_A	436	Periplasmic PH-dependent serine endoprotease DEGQ;	98.58
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.55
4fgm_A	597	Aminopeptidase N family protein; structural genomi	98.52
3qo6_A	348	Protease DO-like 1, chloroplastic; protease, HTRA,	98.52
1lcy_A	325	HTRA2 serine protease; apoptosis, PDZ domain, casp	98.41
3pv2_A	451	DEGQ; trypsin fold, PDZ domain, chaperone protease	98.41
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.13
3num_A	332	Serine protease HTRA1; DEGP, hydrolase; 2.75A {Hom	98.1
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.1
1ky9_A	448	Protease DO, DEGP, HTRA; protein quality control,	98.05
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	98.01
4fln_A	539	Protease DO-like 2, chloroplastic; protease, DEG,	96.6
1r6j_A	82	Syntenin 1; PDZ, membrane protein; 0.73A {Homo sap	96.26
3soe_A	113	Membrane-associated guanylate kinase, WW and PDZ c	96.23
1z87_A	263	Alpha-1-syntrophin; protein binding; NMR {Mus musc	94.16
1v62_A	117	KIAA1719 protein; structural genomics, synaptic tr	93.64
3e17_A	88	Tight junction protein ZO-2; domain swapping, alte	93.42
3axa_A	106	Afadin, nectin-3, protein AF-6; PDZ domain, fusion	93.02
1ujv_A	96	Membrane associated guanylate kinase inverted-2 (M	92.87
2kpk_A	129	Membrane-associated guanylate kinase, WW and PDZ c	92.87
2dc2_A	103	GOPC, golgi associated PDZ and coiled-coil motif c	92.55
1ueq_A	123	Membrane associated guanylate kinase inverted-2 (M	92.41
1wha_A	105	KIAA0147 protein, scribble; PDZ domain, cellular s	92.33
4amh_A	106	Disks large homolog 1; permutation, protein foldin	92.06
3gge_A	95	PDZ domain-containing protein GIPC2; structural ge	91.64
2dkr_A	93	LIN-7 homolog B; LIN-7B, PDZ, structural genomics,	91.49
2kv8_A	83	RGS12, regulator of G-protein signaling 12; PDZ do	91.47
3o46_A	93	Maguk P55 subfamily member 7; PDZ domain, structur	91.36
2he4_A	90	Na(+)/H(+) exchange regulatory cofactor NHE-RF2; p	91.32
2i1n_A	102	Discs, large homolog 3; DLG3, PDZ, PDZ domain, sig	91.2
2edv_A	96	FERM and PDZ domain-containing protein 1; cytoskel	91.09
2dlu_A	111	INAD-like protein; PDZ domain, inadl protein, hina	90.99
2dm8_A	116	INAD-like protein; PDZ domain, inadl protein, hina	90.83
3cbz_A	108	Dishevelled-2; PDZ domain, phage derived high affi	90.77
2awx_A	105	Synapse associated protein 97; membrane protein, s	90.6
2koj_A	111	Partitioning defective 3 homolog; PDZ domain, stru	90.53
2jil_A	97	GRIP1 protein, glutamate receptor interacting prot	90.47
2vwr_A	95	Ligand of NUMB protein X 2; protein-binding, metal	90.46
2csj_A	117	TJP2 protein; PDZ domain, structural genomics, NPP	90.41
1uit_A	117	Human discs large 5 protein; PDZ domain, HDLG5, ma	90.33
2opg_A	98	Multiple PDZ domain protein; structural protein, s	90.29
2qg1_A	92	Multiple PDZ domain protein; MPDZ, MUPP1, structur	90.21
3khf_A	99	Microtubule-associated serine/threonine-protein ki	89.87
3i4w_A	104	Disks large homolog 4; alpha and beta protein, alt	89.75
1n7e_A	97	AMPA receptor interacting protein GRIP; PDZ, prote	89.75
2g5m_B	113	Neurabin-2; spinophilin, PDZ domain, CNS, synaptic	89.68
1kwa_A	88	Hcask/LIN-2 protein; PDZ domain, neurexin, syndeca	89.66
1wfv_A	103	Membrane associated guanylate kinase inverted-2; a	89.65
2eno_A	120	Synaptojanin-2-binding protein; mitochondrial oute	89.53
2f5y_A	91	Regulator of G-protein signalling 3 isoform 1; PDZ	89.34
1um7_A	113	Synapse-associated protein 102; PDZ, discs large h	88.94
2uzc_A	88	Human pdlim5, PDZ and LIM domain 5; metal-binding,	88.77
1uep_A	103	Membrane associated guanylate kinase inverted-2 (M	88.66
2qkv_A	96	Inactivation-NO-after-potential D protein; PDZ dom	88.57
3hpk_A	125	Protein interacting with PRKCA 1; oxidized, PDZ do	88.45
1rgw_A	85	ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK,	88.41
2q3g_A	89	PDZ and LIM domain protein 7; structural genomics,	88.21
1uew_A	114	Membrane associated guanylate kinase inverted-2 (M	88.07
2dmz_A	129	INAD-like protein; PDZ domain, inadl protein, hina	88.06
2vsp_A	91	PDZ domain-containing protein 1; membrane, cytopla	87.89
2v90_A	96	PDZ domain-containing protein 3; membrane, protein	87.81
1um1_A	110	KIAA1849 protein, RSGI RUH-007; PDZ domain, human	87.48
3r68_A	95	Na(+)/H(+) exchange regulatory cofactor NHE-RF3; P	87.24
2la8_A	106	Inactivation-NO-after-potential D protein, KON-TI	87.04
1x6d_A	119	Interleukin-16; PDZ domain, lymphocyte chemoattrac	86.73
2pa1_A	87	PDZ and LIM domain protein 2; PDZ domain, structur	86.06
1vb7_A	94	PDZ and LIM domain 2; PDZ domain PDZ-LIM protein,	85.36
2pkt_A	91	PDZ and LIM domain protein 1; PDZ domain, structur	85.33
3ngh_A	106	PDZ domain-containing protein 1; adaptor protein,	85.21
1v5q_A	122	GRIP1 homolog, glutamate receptor interacting prot	84.49
3bpu_A	88	Membrane-associated guanylate kinase, WW and PDZ c	84.45
2edz_A	114	PDZ domain-containing protein 1; CFTR-associated p	84.35
2cs5_A	119	Tyrosine-protein phosphatase, non-receptor type 4;	84.13
2qbw_A	195	PDZ-fibronectin fusion protein; fibronectin PDZ, u	83.91
1tp5_A	119	Presynaptic density protein 95; PDZ-peptide ligand	83.72
1wf7_A	103	Enigma homologue protein; PDZ domain, structural g	83.52
2d90_A	102	PDZ domain containing protein 1; structural genomi	83.28
1v5l_A	103	PDZ and LIM domain 3; actinin alpha 2 associated L	83.25
2eei_A	106	PDZ domain-containing protein 1; regulatory factor	82.95
2rcz_A	81	Tight junction protein ZO-1; PDZ, domain-swapping,	82.58
1wif_A	126	RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, s	82.32
2dls_A	93	PDZ-rhogef, RHO guanine nucleotide exchange factor	82.11
1g9o_A	91	NHE-RF; PDZ domain, complex, signaling protein; 1.	81.59
3cyy_A	92	Tight junction protein ZO-1; protein-ligand comple	80.21

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=99.78  E-value=2e-18  Score=111.91  Aligned_cols=77  Identities=22%  Similarity=0.314  Sum_probs=71.8

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      ++|.|+|.|...++|||++.+|     +|..+.+++||+++||+.||+|++|||+++.+++|++++.+|+.++..|+|+|
T Consensus         4 ~~r~v~l~k~~~g~~Gf~i~~g-----~I~~v~~gspA~~aGl~~GD~Il~VNG~~v~~~~~~evv~llr~~g~~V~L~v   78 (82)
T 1r6j_A            4 DPRTITMHKDSTGHVGFIFKNG-----KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITI   78 (82)
T ss_dssp             CCEEEEEECCTTSCCCEEEETT-----EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEE
T ss_pred             ceEEEEEEECCCCCeEEEEECC-----EEEEecCCCHHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCEEEEEE
Confidence            6899999998867899999875     48999999999999999999999999999999999999999999999999998


Q ss_pred             EE
Q psy7774         169 HS  170 (173)
Q Consensus       169 ~r  170 (173)
                      ..
T Consensus        79 ~p   80 (82)
T 1r6j_A           79 MP   80 (82)
T ss_dssp             EE
T ss_pred             Ee
Confidence            75

>2ehr_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.74  E-value=2e-17  Score=114.03  Aligned_cols=87  Identities=34%  Similarity=0.537  Sum_probs=79.3

Q ss_pred             CCCCCEEEEEEccCCCcccEEEEccCC-----------CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHH
Q psy7774          86 RSGEPRFLMIETRKCSNLGISLVGGNA-----------VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEA  153 (173)
Q Consensus        86 ~~~~~~~v~l~~~~~~~lG~~l~gg~~-----------~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~  153 (173)
                      .+.+++.|.|.+..+.+|||++.|+.+           .+++|..|.++++|+++| |+.||+|++|||.++.++++.++
T Consensus        12 ~~~~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~   91 (117)
T 2ehr_A           12 HWGPPRIVEIFREPNVSLGISIVGGQTVIKRLKNGEELKGIFIKQVLEDSPAGKTNALKTGDKILEVSGVDLQNASHSEA   91 (117)
T ss_dssp             CBCCCEEEEECCCSSSCCCEEECCCCSCCCSSCCCSCCCSEEEEEECSSSTTTSSCSCCTTCEEEEESSCBCTTCCHHHH
T ss_pred             cCCCCEEEEEEeCCCCccCEEEeCCcccccccccCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence            355789999999877899999998763           589999999999999999 99999999999999999999999


Q ss_pred             HHHHhCCCCeEEEEEEECC
Q psy7774         154 AYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       154 ~~~l~~~g~~v~l~v~r~~  172 (173)
                      +.+++..+..+.|+|.|..
T Consensus        92 ~~~~~~~g~~v~l~v~r~~  110 (117)
T 2ehr_A           92 VEAIKNAGNPVVFIVQSLS  110 (117)
T ss_dssp             HHHHHTSCSSEEEEECCBS
T ss_pred             HHHHHcCCCeEEEEEEECC
Confidence            9999999999999998864

>4e34_A Golgi-associated PDZ and coiled-coil motif-contai protein; PDZ-peptide complex, protein transport-inhibitor complex; 1.40A {Homo sapiens} PDB: 4e35_A

Probab=99.73  E-value=2.7e-17  Score=107.44  Aligned_cols=82  Identities=28%  Similarity=0.446  Sum_probs=75.4

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      +++.|+|.+....+|||++.++.  ..+++|..|.++|||++ +||+.||+|++|||.++.++++.+++..++..++.+.
T Consensus         2 ~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~~agl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   81 (87)
T 4e34_A            2 PIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEIE   81 (87)
T ss_dssp             CCEEEEEECCTTBCCCEEEEEEGGGTEEEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             CEEEEEEEECCCCcccEEEEccCCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            57899999987789999999875  34799999999999999 7999999999999999999999999999998899999


Q ss_pred             EEEEE
Q psy7774         166 VLAHS  170 (173)
Q Consensus       166 l~v~r  170 (173)
                      |+|++
T Consensus        82 l~v~~   86 (87)
T 4e34_A           82 FEVVY   86 (87)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99986

>1qav_A Alpha-1 syntrophin (residues 77-171); beta-finger, heterodimer, membrane protein-oxidoreductase CO; 1.90A {Mus musculus} SCOP: b.36.1.1 PDB: 1z86_A 2pdz_A 2vrf_A

Probab=99.73  E-value=4.9e-17  Score=106.92  Aligned_cols=83  Identities=30%  Similarity=0.428  Sum_probs=76.7

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~-gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      ++++|++.+....+|||++.++.  ..+++|..|.++|||+++ ||+.||+|++|||.++.++++.+++..++..+..+.
T Consensus         4 ~~~~v~l~k~~~~~lG~~i~~~~~~~~g~~V~~V~~~spA~~aggl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~v~   83 (90)
T 1qav_A            4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV   83 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCCCEEEEEECCCCHHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            68999999977789999999875  468999999999999998 899999999999999999999999999998899999


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      |+++|.
T Consensus        84 l~v~r~   89 (90)
T 1qav_A           84 LEVKYM   89 (90)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999885

>3l4f_D SH3 and multiple ankyrin repeat domains protein 1; coiled-coil, PDZ, guanine-nucleotide releasing factor, phosphoprotein, SH3 domain; 2.80A {Rattus norvegicus}

Probab=99.73  E-value=5.3e-17  Score=114.39  Aligned_cols=85  Identities=22%  Similarity=0.389  Sum_probs=77.3

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCCC--------------CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHH
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNAV--------------GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEA  153 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~~--------------~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~  153 (173)
                      .+++.|+|.|....+|||+|.++...              +++|..|.++++|+++||+.||+|++|||.++.++++.++
T Consensus        26 ~~~r~v~l~r~~~~g~Gf~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~  105 (132)
T 3l4f_D           26 IKEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQV  105 (132)
T ss_dssp             CCCCEEEEECCTTSCCCEEEEEECCSSCCSCCCCCTTSCCSEEEEEECTTSGGGGGTCCTTCEEEEESSSBCTTSCHHHH
T ss_pred             CCCEEEEEEECCCCcEeEEEeccCCCCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHH
Confidence            46789999997778999999987642              6999999999999999999999999999999999999999


Q ss_pred             HHHHhCCCCeEEEEEEECC
Q psy7774         154 AYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       154 ~~~l~~~g~~v~l~v~r~~  172 (173)
                      +.+++..++.+.|+|.|..
T Consensus       106 ~~~l~~~g~~v~l~v~~~~  124 (132)
T 3l4f_D          106 VNMIRQGGNTLMVKVVMVT  124 (132)
T ss_dssp             HHHHHHTTTEEEEEEECCC
T ss_pred             HHHHHcCCCEEEEEEEECC
Confidence            9999989999999998764

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=99.73  E-value=8.4e-17  Score=105.81  Aligned_cols=83  Identities=25%  Similarity=0.450  Sum_probs=76.8

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      .+|.|+|.+.. .+|||.+.++. ..+++|..|.++++|+++||+.||+|++|||.++.++++.++..+++..+..+.|+
T Consensus         4 ~~r~v~l~k~~-~g~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   82 (90)
T 2he4_A            4 RPRLCHLRKGP-QGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLL   82 (90)
T ss_dssp             CCEEEEEECBT-TBCCEEEEECSSSSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTSCHHHHHHHHTTSSSEEEEE
T ss_pred             CcEEEEEEECC-CCccEEEEccCCCCCEEEEEECCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            68999999987 79999999876 46899999999999999999999999999999999999999999998889999999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      +.|..
T Consensus        83 v~r~~   87 (90)
T 2he4_A           83 VVGPS   87 (90)
T ss_dssp             EECCC
T ss_pred             EEccC
Confidence            99874

>3b76_A E3 ubiquitin-protein ligase LNX; PDZ, bound ligand, structural genomics, structural genomics consortium, SGC, metal-binding; 1.75A {Homo sapiens}

Probab=99.72  E-value=4.9e-17  Score=112.47  Aligned_cols=83  Identities=27%  Similarity=0.461  Sum_probs=76.7

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPAD  162 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~  162 (173)
                      .++.|.+.+..+.+|||++.++.     ..++||..|.++|+|+++| |+.||+|++|||.++.++++.+++.+++..++
T Consensus        24 ~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~  103 (118)
T 3b76_A           24 HEKVVNIQKDPGESLGMTVAGGASHREWDLPIYVISVEPGGVISRDGRIKTGDILLNVDGVELTEVSRSEAVALLKRTSS  103 (118)
T ss_dssp             EEEEEEEECCTTCCCCEEEEECSCSTTCCCCEEEEEECTTSHHHHHCSSCTTCEEEEETTEEGGGSCHHHHHHHHHSCCS
T ss_pred             CcEEEEEEeCCCCccCEEEecCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            56889999887789999999885     4589999999999999999 99999999999999999999999999999999


Q ss_pred             eEEEEEEEC
Q psy7774         163 KVTVLAHSD  171 (173)
Q Consensus       163 ~v~l~v~r~  171 (173)
                      .+.|+|.|.
T Consensus       104 ~v~L~v~R~  112 (118)
T 3b76_A          104 SIVLKALEV  112 (118)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEEC
Confidence            999999885

>2iwo_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP-1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.7A {Homo sapiens} PDB: 2iwp_A

Probab=99.72  E-value=2.3e-17  Score=114.43  Aligned_cols=85  Identities=24%  Similarity=0.348  Sum_probs=73.4

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRAATAEEAAYELAKPA  161 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~-gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g  161 (173)
                      .+++.|.|.|..+.+|||++.++.     ..++||..|.++++|+++ ||+.||+|++|||.++.++++.+++.+++..+
T Consensus        23 ~~~~~v~l~k~~~~~lGf~i~gg~~~~~~~~~~~V~~V~~~spA~~aggL~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~  102 (120)
T 2iwo_A           23 MGLRTVEMKKGPTDSLGISIAGGVGSPLGDVPIFIAMMHPTGVAAQTQKLRVGDRIVTICGTSTEGMTHTQAVNLLKNAS  102 (120)
T ss_dssp             --CEEEEEEC----CCCEEEEEEEEETTEEEEEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCBHHHHHHHHHHCC
T ss_pred             CCcEEEEEEcCCCCCCCEEEecccCCCCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            368999999988679999999875     348999999999999997 89999999999999999999999999999889


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      +.+.|+|.|..
T Consensus       103 ~~v~l~v~r~g  113 (120)
T 2iwo_A          103 GSIEMQVVAGG  113 (120)
T ss_dssp             SEEEEEEECCT
T ss_pred             CeEEEEEEECC
Confidence            99999999864

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=99.72  E-value=5.5e-17  Score=106.48  Aligned_cols=83  Identities=20%  Similarity=0.235  Sum_probs=74.7

Q ss_pred             CEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      .|.|.|.|.++.+|||++.++...+++|..|.+++||++ +||+.||+|++|||.++.++++++++.+++.....+.|++
T Consensus         2 ~r~V~l~K~~~~~lG~~i~~~~~~~~~I~~V~~gspA~~~agL~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~l~v   81 (88)
T 1kwa_A            2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI   81 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEE
T ss_pred             eEEEEEEeCCCCceeEEEEeCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEEEE
Confidence            578999998778999999975556899999999999999 8899999999999999999999999999986555999999


Q ss_pred             EECC
Q psy7774         169 HSDT  172 (173)
Q Consensus       169 ~r~~  172 (173)
                      .|..
T Consensus        82 ~r~~   85 (88)
T 1kwa_A           82 VPSY   85 (88)
T ss_dssp             ECCC
T ss_pred             ECCc
Confidence            8864

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=99.71  E-value=8.2e-17  Score=106.55  Aligned_cols=84  Identities=15%  Similarity=0.235  Sum_probs=74.6

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK--PADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v  164 (173)
                      .+++.|.|.|.. ++|||+|.++....+||++|.+|++|++.| |++||.|++|||+++.+++|.+++.+|++  .|..+
T Consensus         4 g~~k~V~l~K~~-~~LG~tI~~~g~g~~~I~rI~~gg~a~r~g~L~vGD~I~~VNG~~v~g~~h~evv~lLk~~~~g~~~   82 (95)
T 3gge_A            4 GIEKEVNVYKSE-DSLGLTITDNGVGYAFIKRIKDGGVIDSVKTICVGDHIESINGENIVGWRHYDVAKKLKELKKEELF   82 (95)
T ss_dssp             EEEEEEEEECCS-SCCCEEEECSSSSCCEEEEECTTSHHHHCTTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCTTCEE
T ss_pred             CeEEEEEEEECC-CCceEEEEcCCCCcEEEEEEcCCChHHhcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhCCCCCEE
Confidence            357899999977 999999997656679999999999999955 99999999999999999999999999985  57789


Q ss_pred             EEEEEECC
Q psy7774         165 TVLAHSDT  172 (173)
Q Consensus       165 ~l~v~r~~  172 (173)
                      +|.+.++.
T Consensus        83 ~L~lv~p~   90 (95)
T 3gge_A           83 TMKLIEPK   90 (95)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEECcc
Confidence            99887753

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=99.71  E-value=1.6e-16  Score=107.10  Aligned_cols=84  Identities=38%  Similarity=0.648  Sum_probs=76.9

Q ss_pred             CCCCEEEEEEccCCCcccEEEEccCC-CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          87 SGEPRFLMIETRKCSNLGISLVGGNA-VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        87 ~~~~~~v~l~~~~~~~lG~~l~gg~~-~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      ..+++.|.|.+.. .+|||.+.++.. .+++|..|.++|+|+++| |+.||+|++|||.++.++++.+++..++..++.+
T Consensus         9 ~~~~~~v~l~k~~-~glG~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   87 (104)
T 3i4w_A            9 PREPRRIVIHRGS-TGLGFNIVGGEXGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV   87 (104)
T ss_dssp             CSSCEEEEEECBT-TBTSEEEEECC-CCCEEEEEECTTSHHHHHCCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEE
T ss_pred             CCccEEEEEEeCC-CccCEEEECCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            3478999999986 799999998774 499999999999999999 9999999999999999999999999999999999


Q ss_pred             EEEEEEC
Q psy7774         165 TVLAHSD  171 (173)
Q Consensus       165 ~l~v~r~  171 (173)
                      .|++.|+
T Consensus        88 ~l~v~r~   94 (104)
T 3i4w_A           88 TIIAQYK   94 (104)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEC
Confidence            9999986

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=99.71  E-value=2e-16  Score=104.12  Aligned_cols=82  Identities=28%  Similarity=0.484  Sum_probs=73.4

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      +|+.|+|.|.+ .+|||++.++. ..+++|..|.++|||+++||+.||+|++|||.++.++++.+++.+++..++.+.+.
T Consensus         3 ~~r~v~l~r~~-~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~~   81 (91)
T 1g9o_A            3 LPRLCCLEKGP-NGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL   81 (91)
T ss_dssp             CCEEEEEECBT-TBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             ccEEEEEEeCC-CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            58999999988 79999998876 47999999999999999999999999999999999999999999998877777666


Q ss_pred             EEEC
Q psy7774         168 AHSD  171 (173)
Q Consensus       168 v~r~  171 (173)
                      +.+.
T Consensus        82 ~~~r   85 (91)
T 1g9o_A           82 VVDP   85 (91)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            5554

>2ego_A General receptor for phosphoinositides 1- associated scaffold protein; PDZ domain, ligand-free, protein binding; 1.80A {Rattus norvegicus} PDB: 2egn_A 2egk_A 2pnt_A

Probab=99.71  E-value=1.1e-16  Score=106.54  Aligned_cols=84  Identities=18%  Similarity=0.258  Sum_probs=74.8

Q ss_pred             CCCEEEEEEccCCCcccEEEEc-------cC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh
Q psy7774          88 GEPRFLMIETRKCSNLGISLVG-------GN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA  158 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~g-------g~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~  158 (173)
                      ..++.|.|.|.+..+|||++.+       +.  ..+++|..|.+++||+++||+.||+|++|||.++.++++.++..+++
T Consensus         3 ~~~r~v~l~k~~~~~~Gf~l~~~g~~~~~~~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~   82 (96)
T 2ego_A            3 QQRKVLTLEKGDNQTFGFEIQTYGLHHREEQRVEMVTFVARVHESSPAQLAGLTPGDTIASVNGLNVEGIRHREIVDIIK   82 (96)
T ss_dssp             CCEEEEEEECCTTCCCSEEEEEEEC-------CCEEEEEEEECTTCHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHH
T ss_pred             CccEEEEEEeCCCCCccEEEEeccccccCCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            3679999999887899999986       22  34899999999999999999999999999999999999999999998


Q ss_pred             CCCCeEEEEEEEC
Q psy7774         159 KPADKVTVLAHSD  171 (173)
Q Consensus       159 ~~g~~v~l~v~r~  171 (173)
                      ..++.+.|+|.|.
T Consensus        83 ~~~~~v~l~v~~~   95 (96)
T 2ego_A           83 ASGNVLRLETLYG   95 (96)
T ss_dssp             HTTTEEEEEEECC
T ss_pred             hCCCeEEEEEEEC
Confidence            7788999999875

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=99.71  E-value=1.3e-16  Score=105.20  Aligned_cols=84  Identities=30%  Similarity=0.452  Sum_probs=76.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      +.+.|.|.+.++.+|||.+.++. ..+++|..|.++|||+++| |+.||+|++|||.++.++++.++...++..++.+.|
T Consensus         4 ~~~~v~l~k~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l   83 (92)
T 2qg1_A            4 DTLTIGLQKKPGKGLGLSIVGKRNDTGVFVSDIVKGGIADADGRLMQGDQILMVNGEDVRNATQEAVAALLKCSLGTVTL   83 (92)
T ss_dssp             CEEEEEEECCTTSCCSEEEECCSSSCSCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEE
T ss_pred             eEEEEEEEeCCCCcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            57889999977789999999875 5699999999999999999 999999999999999999999999888888999999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      ++.|..
T Consensus        84 ~v~R~~   89 (92)
T 2qg1_A           84 EVGRIS   89 (92)
T ss_dssp             EEECCC
T ss_pred             EEEccc
Confidence            999874

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.71  E-value=3.6e-16  Score=116.01  Aligned_cols=115  Identities=24%  Similarity=0.342  Sum_probs=98.0

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCccccCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTH   80 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   80 (173)
                      +.+++|.+++.+++.+++.|.|+|.|+....                                                 
T Consensus        68 v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~-------------------------------------------------   98 (196)
T 3gsl_A           68 VREVTHSAAVEALKEAGSIVRLYVMRRKPPA-------------------------------------------------   98 (196)
T ss_dssp             CTTCCHHHHHHHHHTSCSEEEEEEEEECCCC-------------------------------------------------
T ss_pred             CCCCCHHHHHHHHHhCCCcEEEEEEecCCCc-------------------------------------------------
Confidence            3578999999999999999999998853210                                                 


Q ss_pred             CCCCCCCCCCEEEEEEccCCCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHH
Q psy7774          81 VCKDERSGEPRFLMIETRKCSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEE  152 (173)
Q Consensus        81 ~~~~~~~~~~~~v~l~~~~~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~  152 (173)
                             .....+.+.+.. .+|||.+.++.       ..+++|..|.++|+|+++| |+.||+|++|||.++.++++.+
T Consensus        99 -------~~~~~v~l~~~~-~~lG~~~~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~  170 (196)
T 3gsl_A           99 -------EKVMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHED  170 (196)
T ss_dssp             -------EEEEEEEEEEBT-TBSCEEEEESBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCBHHH
T ss_pred             -------cccEEEEEecCC-CCceEEEEccCCCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCCcCCCCCHHH
Confidence                   023567777766 69999998754       2479999999999999998 9999999999999999999999


Q ss_pred             HHHHHhCCCCeEEEEEEECC
Q psy7774         153 AAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       153 ~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ++..++..++.+.|+|.|+.
T Consensus       171 ~~~~l~~~~~~v~l~v~R~~  190 (196)
T 3gsl_A          171 AVAALKNTYDVVYLKVAKPS  190 (196)
T ss_dssp             HHHHHHSCCEEEEEEEEEES
T ss_pred             HHHHHHcCCCeEEEEEeCCC
Confidence            99999999999999999874

>1m5z_A GRIP, AMPA receptor interacting protein; six beta-strands and two alpha-helices, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.71  E-value=2.7e-16  Score=103.51  Aligned_cols=84  Identities=20%  Similarity=0.324  Sum_probs=75.5

Q ss_pred             CCEEEEEEccCC-CcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          89 EPRFLMIETRKC-SNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        89 ~~~~v~l~~~~~-~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      +.+.|+|.+..+ .+|||.+.++. ..+++|..|.++++|+++||+.||+|++|||..+.++++.+++..++..+..+.|
T Consensus         6 ~~~~v~l~k~~~~~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~l   85 (91)
T 1m5z_A            6 ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDL   85 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEE
T ss_pred             ceEEEEEEECCCCCCccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence            567889988653 58999999876 5699999999999999999999999999999999999999998888888999999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      +|.|++
T Consensus        86 ~v~R~p   91 (91)
T 1m5z_A           86 VISRNP   91 (91)
T ss_dssp             EEEECC
T ss_pred             EEEeCc
Confidence            999863

>1wi2_A Riken cDNA 2700099C19; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.71  E-value=1.5e-16  Score=107.39  Aligned_cols=84  Identities=25%  Similarity=0.408  Sum_probs=76.8

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      ..++.|.|.|..+.+|||.+.++.  ..+++|..|.++++|+++||+.||+|++|||..+.++++.+++.+++. +..+.
T Consensus        14 ~~~~~v~l~k~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~-~~~v~   92 (104)
T 1wi2_A           14 FLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKT-AREIS   92 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHH-SSSEE
T ss_pred             CCCEEEEEEeCCCCCccEEEEcccCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhC-CCEEE
Confidence            468999999988789999999875  368999999999999999999999999999999999999999998887 88999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|+|..
T Consensus        93 l~v~r~~   99 (104)
T 1wi2_A           93 MRVRFFS   99 (104)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            9999864

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=99.70  E-value=8.2e-17  Score=108.63  Aligned_cols=85  Identities=28%  Similarity=0.447  Sum_probs=76.6

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      ..++.|.+.+..+.+|||++.++.  ..+++|..|.++++|++ +||+.||+|++|||.++.++++.+++.+++..++.+
T Consensus         8 ~~~~~v~l~~~~~~~lG~~l~~g~~~~~~~~V~~V~~~s~A~~a~gL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~v   87 (103)
T 2dc2_A            8 GPIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGEI   87 (103)
T ss_dssp             -CEEEEEEECCSSSCCCEEEEEEGGGTEEEEEEEECTTSHHHHHTCCCSSEEEEEETTEESTTSCHHHHHHHHHHCCSEE
T ss_pred             CCcEEEEEEeCCCCccCEEEEeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence            467889999887789999999876  34899999999999999 599999999999999999999999999999888899


Q ss_pred             EEEEEECC
Q psy7774         165 TVLAHSDT  172 (173)
Q Consensus       165 ~l~v~r~~  172 (173)
                      .|++.|..
T Consensus        88 ~l~v~~~~   95 (103)
T 2dc2_A           88 EFEVVYVA   95 (103)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEecC
Confidence            99998863

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=99.70  E-value=1.8e-16  Score=107.18  Aligned_cols=83  Identities=29%  Similarity=0.401  Sum_probs=75.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC-------CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA-------VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~-------~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      +.+.|.|.|.+ .+|||++.++.+       .+++|..|.++|+|+++| |+.||+|++|||.++.++++.+++..++..
T Consensus         3 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (105)
T 2awx_A            3 KIMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNSVSLEEVTHEEAVTALKNT   81 (105)
T ss_dssp             CEEEEEEECBT-TBSSEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHSC
T ss_pred             eEEEEEEEECC-CCCCEEEeCccCCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            46789999987 799999998753       489999999999999999 999999999999999999999999999988


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      +..+.|+|.|+.
T Consensus        82 ~~~v~l~v~R~~   93 (105)
T 2awx_A           82 SDFVYLKVAKPT   93 (105)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCeEEEEEEcCC
Confidence            999999999874

>2fe5_A Presynaptic protein SAP102; PDZ domain, DLG3, human, structural genomics, structural GEN consortium, SGC, structural protein; HET: GOL; 1.10A {Homo sapiens} SCOP: b.36.1.1 PDB: 2x7z_A 2oqs_A 1qlc_A 2i0l_A

Probab=99.70  E-value=2.5e-16  Score=104.20  Aligned_cols=83  Identities=28%  Similarity=0.393  Sum_probs=75.1

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      +.+.|+|.|.+ .+|||++.++.       ..+++|..|.+++||+++| |+.||+|++|||.++.++++.+++..++..
T Consensus         3 ~~~~v~l~k~~-~g~G~~i~gg~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (94)
T 2fe5_A            3 TIMEVNLLKGP-KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNT   81 (94)
T ss_dssp             CEEEEEEECCT-TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTC
T ss_pred             EEEEEEEEECC-CCCCEEEEcccCCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            56889999986 89999999875       2489999999999999999 999999999999999999999999999888


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      ++.+.|+|.|+.
T Consensus        82 ~~~v~l~v~R~g   93 (94)
T 2fe5_A           82 SDMVYLKVAKPG   93 (94)
T ss_dssp             CSEEEEEEECCC
T ss_pred             CCeEEEEEEcCC
Confidence            889999998864

>1ujd_A KIAA0559 protein; PDZ domain, structural genomics, human cDNA, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.70  E-value=1.5e-16  Score=109.73  Aligned_cols=85  Identities=27%  Similarity=0.464  Sum_probs=76.0

Q ss_pred             CCEEEEEEccC------CCcccEEEEccCC-------CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHH
Q psy7774          89 EPRFLMIETRK------CSNLGISLVGGNA-------VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA  154 (173)
Q Consensus        89 ~~~~v~l~~~~------~~~lG~~l~gg~~-------~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~  154 (173)
                      ..+.+.+.+..      +.+|||+|.++..       .++||..|.++++|+++| |+.||+|++|||.++.++++.+++
T Consensus        12 ~~~~v~l~r~~~~~~~~~~glG~~i~g~~~~~~~~~~~g~~V~~v~~~s~A~~aG~L~~GD~Il~vng~~v~~~~~~~~~   91 (117)
T 1ujd_A           12 PHARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ   91 (117)
T ss_dssp             CEEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEecCcccCCCCCcccEEEeCCCCCCcccCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHH
Confidence            45778888865      4799999998763       279999999999999999 999999999999999999999999


Q ss_pred             HHHhCCCCeEEEEEEECCC
Q psy7774         155 YELAKPADKVTVLAHSDTN  173 (173)
Q Consensus       155 ~~l~~~g~~v~l~v~r~~~  173 (173)
                      .+++..+..+.|+|+|+.+
T Consensus        92 ~~l~~~~~~v~l~v~R~~~  110 (117)
T 1ujd_A           92 SIISQQSGEAEICVRLDLN  110 (117)
T ss_dssp             HHHSCCSSCEEEEEESSCC
T ss_pred             HHHhcCCCEEEEEEEECCc
Confidence            9999999999999999753

>1uhp_A Hypothetical protein KIAA1095; PDZ domain, semaphorin cytoplasmic domain associated protein, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.70  E-value=1.3e-16  Score=108.23  Aligned_cols=84  Identities=29%  Similarity=0.503  Sum_probs=76.0

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC----------CCCEEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHH
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN----------AVGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRAATAEEAAYE  156 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~----------~~~i~V~~v~~gs~A~~~-gL~~gD~Il~Vng~~~~~~~~~~~~~~  156 (173)
                      .+++.|+|.|.. .+|||++.++.          ..++||..|.++++|+++ ||+.||+|++|||.++.++++.+++.+
T Consensus         7 ~~~~~v~l~k~~-~~lG~~i~g~~~~~~~~~~~~~~gv~V~~V~~~spA~~aggL~~GD~Il~vng~~v~~~~~~~~~~~   85 (107)
T 1uhp_A            7 GKSLTLVLHRDS-GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEA   85 (107)
T ss_dssp             SEEEEEEECCSS-SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEEEEEeCC-CccCEEEEcCCCCcccccccCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            467889999874 89999999865          458999999999999998 899999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEECC
Q psy7774         157 LAKPADKVTVLAHSDT  172 (173)
Q Consensus       157 l~~~g~~v~l~v~r~~  172 (173)
                      ++..++.+.|+|.|..
T Consensus        86 ~~~~~~~v~l~v~R~~  101 (107)
T 1uhp_A           86 FKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHHCCSSEEEEEEECC
T ss_pred             HHcCCCcEEEEEEeCC
Confidence            9888999999998863

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.70  E-value=5.2e-16  Score=116.43  Aligned_cols=112  Identities=17%  Similarity=0.165  Sum_probs=94.7

Q ss_pred             ccHHHHHHHHhhCCCe-EEEEEEeCCCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCccccCCCC
Q psy7774           4 ATYQLAASVLRQCGNS-ITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTHVC   82 (173)
Q Consensus         4 ~th~~av~~L~~~g~~-v~L~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~   82 (173)
                      ++|.+++.+|+.+++. |.|+|.|+....                                                   
T Consensus        83 ~~~~~~~~~~~~~~~~~v~l~v~R~~~~~---------------------------------------------------  111 (206)
T 3r0h_A           83 MTTLKVHQLFHTTYEKAVTLTVFRADPPE---------------------------------------------------  111 (206)
T ss_dssp             SCHHHHHHHHHSCCSSEEEEEEECCSSCC---------------------------------------------------
T ss_pred             cCHHHHHHHHHhcCCCceEEEEEecccCC---------------------------------------------------
Confidence            8899999999999888 999999864310                                                   


Q ss_pred             CCCCCCCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774          83 KDERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA  161 (173)
Q Consensus        83 ~~~~~~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g  161 (173)
                           .....+.+.+....+|||.+.++ ..+++|..|.++|+|+++| |+.||+|++|||.++.++++.+++.+++..+
T Consensus       112 -----~~~~~v~l~~~~~~~lG~~~~~~-~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~  185 (206)
T 3r0h_A          112 -----LEKFNVDLMKKAGKELGLSLSPN-EIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGAN  185 (206)
T ss_dssp             -----EEEEEEEEECCTTCCCCEEEEEC-SSCEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCC
T ss_pred             -----CcEEEEEEecCCCCccCeEEEcC-CceEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence                 01344566665557899999854 3689999999999999988 9999999999999999999999999999999


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      +.+.|+|.|..
T Consensus       186 ~~v~L~V~R~~  196 (206)
T 3r0h_A          186 GKVSMEVTRPK  196 (206)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CeEEEEEEeCC
Confidence            99999999864

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=99.70  E-value=2.4e-16  Score=104.84  Aligned_cols=83  Identities=22%  Similarity=0.372  Sum_probs=75.5

Q ss_pred             CCEEEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      .+|.|.|.+.. .+|||.+.+..    ..+++|..|.+++||+++||+.||+|++|||..+.++++.++..+++..+..+
T Consensus         3 ~~r~v~l~k~~-~~~G~~l~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v   81 (96)
T 2v90_A            3 KPRCLHLEKGP-QGFGFLLREEKGLDGRPGQFLWEVDPGLPAKKAGMQAGDRLVAVAGESVEGLGHEETVSRIQGQGSCV   81 (96)
T ss_dssp             CCEEEEEECBT-TBSCEEEEEEECTTSCEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             CCEEEEEEeCC-CcccEEEEeccCCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEE
Confidence            68999999987 79999998743    34799999999999999999999999999999999999999999998889999


Q ss_pred             EEEEEECC
Q psy7774         165 TVLAHSDT  172 (173)
Q Consensus       165 ~l~v~r~~  172 (173)
                      .|++.|+.
T Consensus        82 ~l~v~r~~   89 (96)
T 2v90_A           82 SLTVVDPE   89 (96)
T ss_dssp             EEEEECCC
T ss_pred             EEEEECCC
Confidence            99999874

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.70  E-value=1.3e-16  Score=105.42  Aligned_cols=84  Identities=25%  Similarity=0.475  Sum_probs=75.8

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      ..++.|+|.|.. .+|||.+.++.  ..+++|..|.++++|+++| |+.||+|++|||..+.++++.+++.+++..++.+
T Consensus         4 ~~~r~v~l~k~~-~glG~~l~~~~~~~~~~~V~~V~~~spA~~aGgl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   82 (93)
T 2dkr_A            4 GSSGVVELPKTD-EGLGFNIMGGKEQNSPIYISRVIPGGVADRHGGLKRGDQLLSVNGVSVEGEQHEKAVELLKAAQGSV   82 (93)
T ss_dssp             SCSCEEEEECCT-TCCCEEEECSSSSSCCCEEEEECTTSHHHHHCCCCTTCBEEEETTEECTTSCHHHHHHHHHHCCSEE
T ss_pred             CCCEEEEEEeCC-CCccEEEecccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence            367999999976 89999999875  5689999999999999985 9999999999999999999999999998778899


Q ss_pred             EEEEEECC
Q psy7774         165 TVLAHSDT  172 (173)
Q Consensus       165 ~l~v~r~~  172 (173)
                      .|++.|+.
T Consensus        83 ~l~v~r~~   90 (93)
T 2dkr_A           83 KLVVRSGP   90 (93)
T ss_dssp             EEEECCCC
T ss_pred             EEEEEeCC
Confidence            99998874

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.70  E-value=1.6e-16  Score=108.47  Aligned_cols=85  Identities=32%  Similarity=0.512  Sum_probs=77.2

Q ss_pred             CCCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          87 SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        87 ~~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      +..++.|.+.+.. .+|||.+.++...+++|..|.++++|+++| |+.||+|++|||..+.++++.+++.+++..+..+.
T Consensus        13 ~~~~~~v~l~~~~-~~lG~~l~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~   91 (111)
T 2dlu_A           13 WGHVEEVELINDG-SGLGFGIVGGKTSGVVVRTIVPGGLADRDGRLQTGDHILKIGGTNVQGMTSEQVAQVLRNCGNSVR   91 (111)
T ss_dssp             CSEEEEEEEECCS-SCCCEEEECCSSSSBEEEEECTTSSHHHHTCCCSSCEEEEESSCCCTTSCHHHHHHHHHHHCSEEE
T ss_pred             cCceEEEEEEeCC-CccCEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            3467889999876 899999998877899999999999999999 99999999999999999999999999987889999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|.|+.
T Consensus        92 l~v~R~~   98 (111)
T 2dlu_A           92 MLVARDP   98 (111)
T ss_dssp             EEEEESC
T ss_pred             EEEEeCC
Confidence            9999864

>2jik_A Synaptojanin-2 binding protein; transmembrane, outer membrane, mitochondria distribution, PDZ, membrane, scaffold, mitochondrion, membrane protein; 1.35A {Homo sapiens} PDB: 2jin_A

Probab=99.69  E-value=1.9e-16  Score=106.20  Aligned_cols=83  Identities=27%  Similarity=0.440  Sum_probs=75.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC-------CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA-------VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~-------~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      .++.|+|.+.+ .+|||++.++.+       .+++|..|.++++|+++| |+.||+|++|||..+.++++.+++.+++..
T Consensus         7 ~~~~v~l~~~~-~~lG~~l~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   85 (101)
T 2jik_A            7 TEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   85 (101)
T ss_dssp             EEEEEEEECCT-TCCCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHTC
T ss_pred             ccEEEEEEeCC-CCCCEEEeccccCCCccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            57889999987 899999998752       589999999999999999 999999999999999999999999999888


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      +..+.|+|.|+.
T Consensus        86 g~~v~l~v~R~~   97 (101)
T 2jik_A           86 GYAVSLRVQHRL   97 (101)
T ss_dssp             CSEEEEEEEEES
T ss_pred             CCeEEEEEEeCC
Confidence            999999998864

>1d5g_A Human phosphatase HPTP1E; protein-peptide complex, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 3lnx_A 3lny_A 3pdz_A 1vj6_A 1gm1_A 1ozi_A

Probab=99.69  E-value=4.3e-16  Score=103.52  Aligned_cols=84  Identities=32%  Similarity=0.480  Sum_probs=76.5

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA  161 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g  161 (173)
                      .++++|.|.+.. .+|||++.++.     ..+++|..|.++++|+++| |+.||+|++|||.++.++++.++..+++..+
T Consensus         4 g~~~~v~l~k~~-~~lG~~i~~g~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g   82 (96)
T 1d5g_A            4 GDIFEVELAKND-NSLGISVTGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVETLRNTG   82 (96)
T ss_dssp             TCEEEEEEECSS-SSCCEEEECCSSSCSSSSCCEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHSCC
T ss_pred             CCEEEEEEEeCC-CCCCEEEECCCCCCCCcCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            367899999876 89999999875     2589999999999999999 9999999999999999999999999998889


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      ..+.|++.|+.
T Consensus        83 ~~v~l~v~R~~   93 (96)
T 1d5g_A           83 QVVHLLLEKGQ   93 (96)
T ss_dssp             SEEEEEEECCS
T ss_pred             CeEEEEEEcCC
Confidence            99999998864

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=99.69  E-value=2.3e-16  Score=104.73  Aligned_cols=84  Identities=29%  Similarity=0.439  Sum_probs=75.5

Q ss_pred             CCEEEEEEcc-CCCcccEEEEccC-CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETR-KCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~-~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      +.+.|.|.|. .+.+|||.+.++. ..+++|..|.++|||+++| |+.||+|++|||.++.++++.+++..++..+..+.
T Consensus         3 ~~~~v~l~k~~~~~~lG~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~   82 (95)
T 2vwr_A            3 EILQVALHKRDSGEQLGIKLVRRTDEPGVFILDLLEGGLAAQDGRLSSNDRVLAINGHDLKYGTPELAAQIIQASGERVN   82 (95)
T ss_dssp             EEEEEEEECSSTTCCCCEEEEECSSSCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             EEEEEEEEECCCCCcccEEEEeccCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEE
Confidence            4578899985 4578999998776 5689999999999999999 99999999999999999999999999988899999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |++.|+.
T Consensus        83 l~v~R~~   89 (95)
T 2vwr_A           83 LTIARPG   89 (95)
T ss_dssp             EEEEEES
T ss_pred             EEEEcCC
Confidence            9999864

>1i16_A Interleukin 16, LCF; cytokine, lymphocyte chemoattractant factor, PDZ domain; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.69  E-value=2.1e-16  Score=111.01  Aligned_cols=84  Identities=23%  Similarity=0.338  Sum_probs=74.4

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCC-----CCEEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNA-----VGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRAATAEEAAYELAKPA  161 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~-----~~i~V~~v~~gs~A~~~-gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g  161 (173)
                      .+.+.|.|.|.. .+|||+|.|+.+     .++||..|.+|++|+++ ||+.||+|++|||.++.+++|++++.+++..+
T Consensus        28 ~~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~i~I~~V~~gs~A~~aggL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  106 (130)
T 1i16_A           28 ATVCTVTLEKMS-AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALP  106 (130)
T ss_dssp             EEEEEEEEETTS-SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSC
T ss_pred             CcEEEEEEEcCC-CccCEEEecCcCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            356788999875 899999998764     58999999999999997 89999999999999999999999999998764


Q ss_pred             -CeEEEEEEECC
Q psy7774         162 -DKVTVLAHSDT  172 (173)
Q Consensus       162 -~~v~l~v~r~~  172 (173)
                       ..+.|+|+|..
T Consensus       107 ~~~v~l~v~r~~  118 (130)
T 1i16_A          107 DGPVTIVIRRKS  118 (130)
T ss_dssp             SSEEEEEEEEES
T ss_pred             CceEEEEEEeCC
Confidence             56999998863

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=99.69  E-value=6.3e-17  Score=106.65  Aligned_cols=84  Identities=23%  Similarity=0.348  Sum_probs=74.1

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      ..||.|+|.|.. .+|||.+.+.. ..+++|..|.+++||+++||+.||+|++|||.++.++++.++..+++..+..+.|
T Consensus         2 ~~pr~v~l~k~~-~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l   80 (91)
T 2vsp_A            2 MKPKLCRLAKGE-NGYGFHLNAIRGLPGSFIKEVQKGGPADLAGLEDEDVIIEVNGVNVLDEPYEKVVDRIQSSGKNVTL   80 (91)
T ss_dssp             CCEEEEEEECBT-TBTSCCCBCCTTCSCCBC-CCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHTTSCSEEEE
T ss_pred             CCcEEEEEEeCC-CcccEEEEeccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEE
Confidence            368999999987 69999998755 4689999999999999999999999999999999999999999999877999999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      ++.|..
T Consensus        81 ~v~r~~   86 (91)
T 2vsp_A           81 LVCGKK   86 (91)
T ss_dssp             EEEC--
T ss_pred             EEEeCC
Confidence            998864

>2d92_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.69  E-value=2.4e-16  Score=107.16  Aligned_cols=84  Identities=23%  Similarity=0.258  Sum_probs=75.3

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC-
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK-  159 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~-  159 (173)
                      .+++.|.|.|.+ .+|||++.++.      ..+++|..|.++++|+++| |+.||+|++|||.++.++++++++.+++. 
T Consensus        14 ~~~~~v~l~k~~-~glG~~i~~~~~~~~~~~~g~~V~~v~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~   92 (108)
T 2d92_A           14 PEVKIVELVKDC-KGLGFSILDYQDPLDPTRSVIVIRSLVADGVAERSGGLLPGDRLVSVNEYCLDNTSLAEAVEILKAV   92 (108)
T ss_dssp             SSCEEEEEEECS-SCCSEEEEEEECSSCTTCEEEEEEEECTTCHHHHHTCCCTTCEEEEESSCBCTTCCHHHHHHHHHHS
T ss_pred             CceEEEEEEECC-CccCEEEecccccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            367899999987 89999998863      3579999999999999988 99999999999999999999999999986 


Q ss_pred             CCCeEEEEEEECC
Q psy7774         160 PADKVTVLAHSDT  172 (173)
Q Consensus       160 ~g~~v~l~v~r~~  172 (173)
                      .+..+.|+|.|..
T Consensus        93 ~~~~v~l~v~R~~  105 (108)
T 2d92_A           93 PPGLVHLGICSGP  105 (108)
T ss_dssp             CSEEEEEEEECCC
T ss_pred             CCCeEEEEEEcCC
Confidence            4679999999874

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=99.69  E-value=3.8e-16  Score=103.55  Aligned_cols=84  Identities=24%  Similarity=0.415  Sum_probs=75.2

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      .+++.+.|.+.. .+|||.+.++. ..+++|..|.+++||+++||+.||+|++|||.++.++++.++..+++..++.+.+
T Consensus         4 ~~~r~v~l~~~~-~~~G~~l~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~   82 (95)
T 3r68_A            4 HQPRVVVIKKGS-NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTL   82 (95)
T ss_dssp             CCCEEEEEECBT-TBCSCEEEEC--CCSEEEECCCTTSHHHHHTCCTTEEEEEETTEECTTCCHHHHHHHHHTTTTEEEE
T ss_pred             CCcEEEEEecCC-CcccEEEEecCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence            368999999976 89999998765 3489999999999999999999999999999999999999999999999999988


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      ++.|..
T Consensus        83 ~~~r~~   88 (95)
T 3r68_A           83 LVLDKE   88 (95)
T ss_dssp             EEEECC
T ss_pred             EEECCc
Confidence            887753

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=99.69  E-value=6.3e-17  Score=110.14  Aligned_cols=84  Identities=23%  Similarity=0.371  Sum_probs=74.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC---
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP---  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~---  160 (173)
                      ++++|.|.+....+|||++.++.    ..++||..|.++++|+++| |+.||+|++|||.++.++++++++.+++..   
T Consensus         5 ~~~~v~l~k~~~~~lG~~i~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~   84 (108)
T 3cbz_A            5 NIITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDMNFENMSNDDAVRVLRDIVHK   84 (108)
T ss_dssp             CEEEEEECHHHHCCCCEEEEEECSSTTCCEEEEEEECTTSHHHHHCCCCTTCEEEEETTEETTSCCHHHHHHHHHHHHTS
T ss_pred             eEEEEEEEeCCCCccCEEEEcCcCCCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccC
Confidence            67899999866689999999874    4689999999999999998 999999999999999999999999999754   


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      +..|.|+|.|..
T Consensus        85 ~~~v~l~v~R~~   96 (108)
T 3cbz_A           85 PGPIVLTVAKSG   96 (108)
T ss_dssp             SSCEEEEEECCC
T ss_pred             CCeEEEEEEeCC
Confidence            567999998864

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.68  E-value=2.3e-16  Score=106.67  Aligned_cols=83  Identities=28%  Similarity=0.525  Sum_probs=75.0

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC--------CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA--------VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~--------~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      +...+.|.+.. .+|||++.++.+        .+++|..|.++++|+++| |+.||+|++|||.++.++++.+++.+++.
T Consensus         7 ~~~~v~l~~~~-~glG~~l~~g~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~   85 (105)
T 1wha_A            7 GRHVACLARSE-RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTA   85 (105)
T ss_dssp             EEEEEEECCCT-TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTS
T ss_pred             eeEEEEEEeCC-CccCEEEEeccCCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            45678888866 789999998753        589999999999999999 99999999999999999999999999998


Q ss_pred             CCCeEEEEEEECC
Q psy7774         160 PADKVTVLAHSDT  172 (173)
Q Consensus       160 ~g~~v~l~v~r~~  172 (173)
                      .+..+.|+|.|+.
T Consensus        86 ~g~~v~l~v~R~~   98 (105)
T 1wha_A           86 ASPTIALLLEREA   98 (105)
T ss_dssp             CCSCEEEEEEECC
T ss_pred             CCCeEEEEEEECC
Confidence            8999999999974

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=99.68  E-value=6.7e-16  Score=102.96  Aligned_cols=83  Identities=35%  Similarity=0.508  Sum_probs=75.7

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC---CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA---VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~---~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      +++.|.+.+.. .+|||++.++.+   .+++|..|.+++||+++| |+.||+|++|||.++.++++.+++..++..+..+
T Consensus         4 ~~~~v~l~~~~-~~lG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v   82 (98)
T 2opg_A            4 CETTIEISKGR-TGLGLSIVGGSDTLLGAIIIHEVYEEGAACKDGRLWAGDQILEVNGIDLRKATHDEAINVLRQTPQRV   82 (98)
T ss_dssp             EEEEEEEECBT-TBTCEEEEECTTSTTCSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEE
T ss_pred             CEEEEEEEECC-CcccEEEecCCCCCCCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            56889999876 899999998764   589999999999999999 9999999999999999999999999998888999


Q ss_pred             EEEEEECC
Q psy7774         165 TVLAHSDT  172 (173)
Q Consensus       165 ~l~v~r~~  172 (173)
                      .|+|.|+.
T Consensus        83 ~l~v~R~~   90 (98)
T 2opg_A           83 RLTLYRDE   90 (98)
T ss_dssp             EEEEEECS
T ss_pred             EEEEEcCC
Confidence            99999864

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=99.68  E-value=3.3e-16  Score=105.26  Aligned_cols=83  Identities=23%  Similarity=0.376  Sum_probs=75.4

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      +.+.|.|.+.. .+|||++.++.       ..+++|..|.+++||+++| |+.||+|++|||.++.++++.+++..++..
T Consensus         4 ~~~~v~l~k~~-~glG~~i~~g~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~   82 (102)
T 2i1n_A            4 KYEEIVLERGN-SGLGFSIAGGIDNPHVPDDPGIFITKIIPGGAAAMDGRLGVNDCVLRVNEVDVSEVVHSRAVEALKEA   82 (102)
T ss_dssp             EEEEEEEECBT-TBTSEEEEECTTSCSSTTCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHS
T ss_pred             eEEEEEEEECC-CcCCEEEEcccCCCCcCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            46789999876 89999999875       3589999999999999999 999999999999999999999999999888


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      +..+.|+|.|+.
T Consensus        83 g~~v~l~v~R~~   94 (102)
T 2i1n_A           83 GPVVRLVVRRRQ   94 (102)
T ss_dssp             CSEEEEEEEEEC
T ss_pred             CCeEEEEEEeCC
Confidence            999999999864

>2fne_A Multiple PDZ domain protein; structural protein, structural genomics, SGC, structural genomics consortium, unknown function; 1.83A {Homo sapiens} SCOP: b.36.1.1

Probab=99.68  E-value=1.3e-16  Score=110.06  Aligned_cols=84  Identities=32%  Similarity=0.492  Sum_probs=75.9

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA  161 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g  161 (173)
                      .+++.|+|.|.. .+|||++.++.     ..+++|..|.++|||+++| |+.||+|++|||.++.++++.+++..++..+
T Consensus        24 ~~~~~v~L~k~~-~glGf~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~  102 (117)
T 2fne_A           24 PQCKSITLERGP-DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTK  102 (117)
T ss_dssp             CEEEEEEECCBT-TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCC
T ss_pred             CccEEEEEEeCC-CcccEEEecccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            367889999987 89999999875     3489999999999999988 9999999999999999999999999998888


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      +.+.|+|.|..
T Consensus       103 ~~v~l~v~R~g  113 (117)
T 2fne_A          103 GTVTLMVLSSD  113 (117)
T ss_dssp             SSEEEEEEECS
T ss_pred             CeEEEEEEeCC
Confidence            88999999874

>2db5_A INAD-like protein; PDZ domain, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ, structural genomics; NMR {Homo sapiens}

Probab=99.68  E-value=1e-16  Score=112.14  Aligned_cols=85  Identities=26%  Similarity=0.391  Sum_probs=77.2

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCC-----CCEEEEEecCCCcccccC-CCCCCEEEEECCEecC-CCCHHHHHHHHhCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNA-----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR-AATAEEAAYELAKP  160 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~-----~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~-~~~~~~~~~~l~~~  160 (173)
                      .+++.|.|.+..+.+|||.+.++..     .++||..|.++++|+++| |+.||+|++|||.++. ++++.+++.+++..
T Consensus        24 ~~~~~v~l~k~~~~~lG~~i~g~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~~l~~~  103 (128)
T 2db5_A           24 RQIEYIDIERPSTGGLGFSVVALRSQNLGKVDIFVKDVQPGSVADRDQRLKENDQILAINHTPLDQNISHQQAIALLQQT  103 (128)
T ss_dssp             CEEEEEEEECCSSSCCCCEEEEEECSSSSCEEEEEECCCTTSHHHHTCCCCSSCBEEEESSCBCSTTSCHHHHHHHHHHC
T ss_pred             CceEEEEEEECCCCccCEEEecccCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            4678899999876899999988653     389999999999999999 9999999999999997 99999999999888


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      +..|.|+|.|+.
T Consensus       104 ~~~v~l~v~r~~  115 (128)
T 2db5_A          104 TGSLRLIVAREP  115 (128)
T ss_dssp             CSEEEEEEEECC
T ss_pred             CCeEEEEEEcCC
Confidence            999999999874

>2ejy_A 55 kDa erythrocyte membrane protein; GPC, maguk, PDZ, membrane protein; NMR {Homo sapiens} PDB: 2ev8_A

Probab=99.68  E-value=2e-16  Score=105.73  Aligned_cols=84  Identities=20%  Similarity=0.307  Sum_probs=75.8

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      -++.|.|.|..+.+|||.+......+++|..|.+++||+++| |++||+|++|||.++.+++++++..+++..++.+.|+
T Consensus        12 ~~~~v~l~K~~~~~lG~~l~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~v~L~   91 (97)
T 2ejy_A           12 MVRLIQFEKVTEEPMGICLKLNEKQSCTVARILHGGMIHRQGSLHVGDEILEINGTNVTNHSVDQLQKAMKETKGMISLK   91 (97)
T ss_dssp             -CEEEEEEECSSSCCSEEEEECTTCCEEEEEECSSSHHHHHTCCCTTCEEEEETTBCCCSSCSHHHHHHHHHCCEEEEEE
T ss_pred             ccEEEEEEeCCCCCeeEEEEeCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            478999999888999999987666799999999999999999 9999999999999999999999999998778899999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      |.+..
T Consensus        92 V~~~~   96 (97)
T 2ejy_A           92 VIPNQ   96 (97)
T ss_dssp             EECCC
T ss_pred             EEECC
Confidence            88653

>2h2b_A Tight junction protein ZO-1; PDZ domain, phage derived high affinity ligand, cell adhesio; 1.60A {Homo sapiens} PDB: 2h2c_A 2h3m_A 2rrm_A

Probab=99.68  E-value=7.7e-16  Score=104.30  Aligned_cols=84  Identities=19%  Similarity=0.286  Sum_probs=76.0

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCC--------CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNA--------VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~--------~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      .+++.|.|.|.++.+|||++.++.+        .+++|..|.+++||+ +||++||+|++|||.++.++++.+++..++.
T Consensus         6 ~~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~gv~V~~V~~~spA~-agl~~GD~I~~vng~~v~~~~~~~~~~~~~~   84 (107)
T 2h2b_A            6 WEQHTVTLHRAPGFGFGIAISGGRDNPHFQSGETSIVISDVLKGGPAE-GQLQENDRVAMVNGVSMDNVEHAFAVQQLRK   84 (107)
T ss_dssp             EEEEEEEEECBTTTBTCEEEEECTTSCCTTTCCCCEEEEEECTTSTTB-TTBCTTCEEEEETTEECTTCCHHHHHHHHHT
T ss_pred             ceeEEEEEEeCCCCccCEEEecCcCCCcccCCCCCEEEEEECCCCchh-hCCCCCCEEEEECCEECCCccHHHHHHHhhC
Confidence            4678899999877899999998653        489999999999999 9999999999999999999999999888888


Q ss_pred             CCCeEEEEEEECC
Q psy7774         160 PADKVTVLAHSDT  172 (173)
Q Consensus       160 ~g~~v~l~v~r~~  172 (173)
                      .+..+.|+|.|+.
T Consensus        85 ~g~~v~l~v~R~~   97 (107)
T 2h2b_A           85 SGKNAKITIRRKK   97 (107)
T ss_dssp             CCSEEEEEEEEES
T ss_pred             CCCEEEEEEEECC
Confidence            8999999998864

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.68  E-value=4.4e-16  Score=107.40  Aligned_cols=85  Identities=28%  Similarity=0.331  Sum_probs=77.2

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCC---CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNA---VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADK  163 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~---~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~  163 (173)
                      ..++.|.|.+..+.+|||.+.++..   .++||..|.++++|+++| |++||+|++|||..+.++++++++.+++..+..
T Consensus        14 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~   93 (117)
T 1v62_A           14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEK   93 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSE
T ss_pred             CCcEEEEEEcCCCCcccEEEEccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCe
Confidence            4689999999877899999988642   459999999999999998 999999999999999999999999999989999


Q ss_pred             EEEEEEECC
Q psy7774         164 VTVLAHSDT  172 (173)
Q Consensus       164 v~l~v~r~~  172 (173)
                      +.|+|.|..
T Consensus        94 v~l~v~r~~  102 (117)
T 1v62_A           94 VRLEILPVP  102 (117)
T ss_dssp             EEEEECCBT
T ss_pred             EEEEEEECC
Confidence            999998864

>2byg_A Channel associated protein of synapse-110; DLG2, PDZ, PDZ domain, structural genomics, structural genom consortium, SGC, phosphorylation; 1.85A {Homo sapiens} SCOP: b.36.1.1

Probab=99.68  E-value=4.5e-16  Score=107.37  Aligned_cols=82  Identities=28%  Similarity=0.366  Sum_probs=75.2

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      +.+.|.+.++. .+|||++.++.       ..+++|..|.++|+|+++| |+.||+|++|||.++.++++.+++.+++..
T Consensus        24 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~  102 (117)
T 2byg_A           24 TVVEIKLFKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIDGGAAQKDGRLQVGDRLLMVNNYSLEEVTHEEAVAILKNT  102 (117)
T ss_dssp             EEEEEEEECBT-TBSSEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTC
T ss_pred             ceEEEEEEeCC-CCcCEEEEcccCCCCccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            56788898887 89999999874       3489999999999999999 999999999999999999999999999988


Q ss_pred             CCeEEEEEEEC
Q psy7774         161 ADKVTVLAHSD  171 (173)
Q Consensus       161 g~~v~l~v~r~  171 (173)
                      +..|.|+|.|.
T Consensus       103 g~~v~l~v~R~  113 (117)
T 2byg_A          103 SEVVYLKVGKP  113 (117)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEeC
Confidence            99999999986

>2q9v_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; Cys Ser mutant, S genomics consortium, SGC, transferase; 2.00A {Homo sapiens}

Probab=99.68  E-value=2.1e-16  Score=103.83  Aligned_cols=83  Identities=17%  Similarity=0.357  Sum_probs=73.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC--CCe
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP--ADK  163 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~--g~~  163 (173)
                      +++.|.|.+.. .+|||.+.++.  ..+++|..|.++|||+++| |+.||+|++|||.++.++++.++...++..  +..
T Consensus         2 ~~~~v~l~~~~-~g~G~~~~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~   80 (90)
T 2q9v_A            2 MEQDIFLWRKE-TGFGFRILGGNEPGEPIYIGHIVPLGAADTDGRLRSGDELISVDGTPVIGKSHQLVVQLMQQAAKQGH   80 (90)
T ss_dssp             EEEEEEEECBT-TBCCEEEEECSSTTSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred             CcEEEEEEECC-CccCEEEEccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCe
Confidence            46889999987 89999999875  3579999999999999999 999999999999999999999999988765  448


Q ss_pred             EEEEEEECC
Q psy7774         164 VTVLAHSDT  172 (173)
Q Consensus       164 v~l~v~r~~  172 (173)
                      +.|+|.|..
T Consensus        81 v~l~v~R~~   89 (90)
T 2q9v_A           81 VNLTVRQTR   89 (90)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecc
Confidence            999998863

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=99.68  E-value=4.7e-16  Score=108.33  Aligned_cols=83  Identities=23%  Similarity=0.322  Sum_probs=76.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      .++.+++.+....+|||++.++.  ..+++|..|.+|++|+++| |+.||+|++|||.++.++++.+++.+++..++.+.
T Consensus        19 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~V~~v~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~v~   98 (125)
T 3hpk_A           19 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT   98 (125)
T ss_dssp             EEEEEEEECCTTSCCCEEEEECSSCCSSEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHSCSEEE
T ss_pred             CCeEEEEEeCCCCCcCEEEeccCCCCCCEEEEEeCCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            56889999988789999999886  4689999999999999999 99999999999999999999999999998888899


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      |+++|.
T Consensus        99 l~v~r~  104 (125)
T 3hpk_A           99 IHYNKL  104 (125)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999884

>3nfk_A Tyrosine-protein phosphatase non-receptor type 4; PDZ-PDZ-binding site complex, protein binding; 1.43A {Homo sapiens} SCOP: b.36.1.1 PDB: 3nfl_A 2vph_A

Probab=99.68  E-value=2.8e-16  Score=106.49  Aligned_cols=84  Identities=17%  Similarity=0.347  Sum_probs=75.3

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC--CCCCCEEEEECCEecCCCCHHHHHHHHhCCCC-
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG--LRTGDRILEYNGTDLRAATAEEAAYELAKPAD-  162 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g--L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~-  162 (173)
                      ...+.+.|.+....+|||.+.++.  ..+++|..|.++++|+++|  |+.||+|++|||.++.++++.+++.+++..++ 
T Consensus        16 ~~~~~v~l~~~~~~~~G~~~~gg~~~~~~~~V~~V~~~spA~~aG~rL~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~   95 (107)
T 3nfk_A           16 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCER   95 (107)
T ss_dssp             CCCEEEEECCCTTSCCCEEEEEEGGGTEEEEEEEECTTSHHHHSSSCCCTTCEEEEETTEECTTCCHHHHHHHHHCGGGS
T ss_pred             CCEEEEEEEcCCCCCCCEEEEccCCCCCCeEEEEECCCCchHHcCCccCCCCEEEEECCEECCCCCHHHHHHHHHhcccc
Confidence            357889998887789999999876  3479999999999999999  99999999999999999999999999988765 


Q ss_pred             ---eEEEEEEEC
Q psy7774         163 ---KVTVLAHSD  171 (173)
Q Consensus       163 ---~v~l~v~r~  171 (173)
                         .+.|+|+|+
T Consensus        96 ~~~~v~l~v~r~  107 (107)
T 3nfk_A           96 HSGELMLLVRPN  107 (107)
T ss_dssp             BTTBEEEEEECC
T ss_pred             CCcEEEEEEEcC
Confidence               999999874

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.68  E-value=6.1e-16  Score=106.11  Aligned_cols=85  Identities=19%  Similarity=0.240  Sum_probs=76.0

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCC---------CCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNA---------VGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYEL  157 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~---------~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l  157 (173)
                      .+++.|.+.+....+|||.|.++..         .+++|..|.++++|++ +||+.||+|++|||..+.++++.++..++
T Consensus         9 ~~~~~v~l~~~~~~~lGf~l~~~~~~~~~g~~~~~~~~V~~V~~~spA~~~agL~~GD~I~~ing~~v~~~~~~~~~~~l   88 (114)
T 1uew_A            9 LQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLI   88 (114)
T ss_dssp             CCCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHH
T ss_pred             ccceEEEEEECCCCCCCEEEEeecccCCCCcccccCeEEEEECCCChHHHhCCCCCCCEEEEECCEECCCCCHHHHHHHH
Confidence            4789999998766899999987641         2679999999999999 99999999999999999999999999999


Q ss_pred             hCCCCeEEEEEEECC
Q psy7774         158 AKPADKVTVLAHSDT  172 (173)
Q Consensus       158 ~~~g~~v~l~v~r~~  172 (173)
                      +..+..+.|+|.|..
T Consensus        89 ~~~g~~v~l~v~r~~  103 (114)
T 1uew_A           89 KDAGLSVTLRIIPQE  103 (114)
T ss_dssp             HHTTTEEEEEECCCS
T ss_pred             HcCCCeEEEEEEeCC
Confidence            888999999998864

>2djt_A Unnamed protein product; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=4.4e-16  Score=105.00  Aligned_cols=84  Identities=17%  Similarity=0.256  Sum_probs=75.7

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPAD  162 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~  162 (173)
                      .+++.+.|.+.. .+|||.+.++.    ..+++|..|.+++||+++| |+.||+|++|||..+.++++.+++.+++..+.
T Consensus        10 ~~~~~v~l~~~~-~g~G~~l~~~~~~~~~~~v~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~   88 (104)
T 2djt_A           10 SGHFSVELVRGY-AGFGLTLGGGRDVAGDTPLAVRGLLKDGPAQRCGRLEVGDLVLHINGESTQGLTHAQAVERIRAGGP   88 (104)
T ss_dssp             CCCEEEEEECCS-SSCCEEEECCEETTEECCCEEEEECTTCHHHHHCSCCTTCBEEEETTEECTTCCHHHHHHHHHHTCS
T ss_pred             CceEEEEEEeCC-CCccEEEEeccCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            467889999877 79999999864    4689999999999999999 99999999999999999999999988887899


Q ss_pred             eEEEEEEECC
Q psy7774         163 KVTVLAHSDT  172 (173)
Q Consensus       163 ~v~l~v~r~~  172 (173)
                      .+.|+|.|+.
T Consensus        89 ~v~l~v~R~g   98 (104)
T 2djt_A           89 QLHLVIRRPL   98 (104)
T ss_dssp             EEEEEECCCC
T ss_pred             eEEEEEEECC
Confidence            9999998864

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=99.67  E-value=1.3e-16  Score=103.38  Aligned_cols=82  Identities=22%  Similarity=0.334  Sum_probs=74.2

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      .++.|.|.+.. .+|||.+.++  .+++|..|.++++|+++||+.||+|++|||.++.++++.++...++..++.+.|++
T Consensus         2 ~~r~v~l~~~~-~g~G~~~~~~--~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v   78 (83)
T 2kv8_A            2 RVRSVEVARGR-AGYGFTLSGQ--APCVLSCVMRGSPADFVGLRAGDQILAVNEINVKKASHEDVVKLIGKCSGVLHMVI   78 (83)
T ss_dssp             CEEEEEECCCS-SCCSCBCCCS--SSCBCCBCCTTSTTTTTTCCTTCEEEEETTEECSSCCHHHHHHHHTTCSSCEEEEE
T ss_pred             CcEEEEEEeCC-CcccEEEEcC--CCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEE
Confidence            57899999987 8999998764  37999999999999999999999999999999999999999999988888899999


Q ss_pred             EECCC
Q psy7774         169 HSDTN  173 (173)
Q Consensus       169 ~r~~~  173 (173)
                      .|+++
T Consensus        79 ~R~~g   83 (83)
T 2kv8_A           79 AEGVG   83 (83)
T ss_dssp             ECCCC
T ss_pred             EcCCC
Confidence            99763

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=99.67  E-value=7e-16  Score=100.88  Aligned_cols=82  Identities=18%  Similarity=0.318  Sum_probs=72.4

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      .+..|.+ +++ .+|||++.++.  ..+++|..|.+++||+++||+.||+|++|||.++.++++.++..+++..+..+.|
T Consensus         3 ~~~~v~l-~~~-~~~G~~l~~g~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   80 (88)
T 2uzc_A            3 SNYSVSL-VGP-APWGFRLQGGKDFNMPLTISSLKDGGKAAQANVRIGDVVLSIDGINAQGMTHLEAQNKIKGCTGSLNM   80 (88)
T ss_dssp             CEEEEEE-ESS-SCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEEE
T ss_pred             cEEEEEE-cCC-CcccEEEECcCCCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence            3566777 444 79999999876  4579999999999999999999999999999999999999999888878999999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      ++.|+.
T Consensus        81 ~v~R~g   86 (88)
T 2uzc_A           81 TLQRES   86 (88)
T ss_dssp             EEECCC
T ss_pred             EEEeCC
Confidence            999864

>1ihj_A INAD; intermolecular disulfide bond, PDZ domain, signaling protein; 1.80A {Drosophila melanogaster} SCOP: b.36.1.1

Probab=99.67  E-value=4.1e-16  Score=104.01  Aligned_cols=84  Identities=24%  Similarity=0.416  Sum_probs=75.2

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      .++.|+|.|....+|||++.++.        ..+++|..|.+++||+++| |+.||+|++|||..+.++++.++..+++.
T Consensus         5 ~~~~v~l~k~~~~glG~~i~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~   84 (98)
T 1ihj_A            5 LIHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKE   84 (98)
T ss_dssp             EEEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHH
T ss_pred             eEEEEEEEeCCCCCcCEEEeccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            36789999966689999998865        2389999999999999999 99999999999999999999999999988


Q ss_pred             CCCeEEEEEEECC
Q psy7774         160 PADKVTVLAHSDT  172 (173)
Q Consensus       160 ~g~~v~l~v~r~~  172 (173)
                      .+..+.|+|.|+.
T Consensus        85 ~g~~v~l~v~R~g   97 (98)
T 1ihj_A           85 ADFKIELEIQTFD   97 (98)
T ss_dssp             SCSEEEEEEEEC-
T ss_pred             CCCeEEEEEEeCC
Confidence            9999999999974

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=99.67  E-value=3.3e-16  Score=105.97  Aligned_cols=82  Identities=26%  Similarity=0.340  Sum_probs=75.7

Q ss_pred             CEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      |+.+.|.+.++.+|||.+..+. ..+++|..|.++|||+++||+.||+|++|||.++.++++.+++..++..++.+.|++
T Consensus         2 ~r~v~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v   81 (106)
T 3ngh_A            2 PRESKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLLV   81 (106)
T ss_dssp             CEEEEEECCTTCCCCCEEECCTTCCSCEEECCCTTSHHHHTTCCTTCEEEEETTEECTTSCHHHHHHHHHHTTTEEEEEE
T ss_pred             CEEEEEEeCCCCeeCEEEEEEeCCCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEEE
Confidence            6889999988889999998765 458999999999999999999999999999999999999999999988899999999


Q ss_pred             EEC
Q psy7774         169 HSD  171 (173)
Q Consensus       169 ~r~  171 (173)
                      .|.
T Consensus        82 ~r~   84 (106)
T 3ngh_A           82 LDG   84 (106)
T ss_dssp             ECH
T ss_pred             EEC
Confidence            875

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=99.67  E-value=3.5e-16  Score=104.11  Aligned_cols=83  Identities=23%  Similarity=0.382  Sum_probs=74.7

Q ss_pred             CCEEEEEEccCCCcccEEEEccC------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA  161 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g  161 (173)
                      +...|.+.+.. .+|||++.++.      ..+++|..|.+++||+++| |++||+|++|||.++.++++.++..+++..+
T Consensus         3 ~~~~v~l~k~~-~~lG~~i~~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~g   81 (97)
T 2jil_A            3 RTVEVTLHKEG-NTFGFVIRGGAHDDRNKSRPVVITSVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEAMSILKQCG   81 (97)
T ss_dssp             EEEEEEEECBT-TBCSEEEEEECCSCC--CEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHHSC
T ss_pred             eEEEEEEEeCC-CccCEEEeCcccCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            35678888865 89999999875      3589999999999999999 9999999999999999999999999998899


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      ..+.|+|.|+.
T Consensus        82 ~~v~l~v~R~~   92 (97)
T 2jil_A           82 QEAALLIEYDV   92 (97)
T ss_dssp             SEEEEEEEEEC
T ss_pred             CeEEEEEEeCC
Confidence            99999999864

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=99.67  E-value=4.5e-16  Score=105.55  Aligned_cols=76  Identities=32%  Similarity=0.465  Sum_probs=67.8

Q ss_pred             ccCCCcccEEEEccCC-------CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          97 TRKCSNLGISLVGGNA-------VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        97 ~~~~~~lG~~l~gg~~-------~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      .....+|||++.||.+       .+++|..|.++++|+++| |+.||+|++|||.++.++++.+++..++..++.+.|+|
T Consensus         9 ~~~~~~~Gf~i~gG~~~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~v~l~v   88 (106)
T 4amh_A            9 PRGSKGLGFSIAGGVGNQHWPGDNSIYVTKIIEGGAAHKDGKLQIGDKLLAVNNVALEEVTHEEAVTALKNTSDFVYLKV   88 (106)
T ss_dssp             ---CCCSCEEEEECTTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECSSCCHHHHHHHHHSCCSEEEEEE
T ss_pred             CCCCCccCEEEEeccCCccccCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEE
Confidence            3345899999999863       289999999999999999 99999999999999999999999999999999999999


Q ss_pred             EECC
Q psy7774         169 HSDT  172 (173)
Q Consensus       169 ~r~~  172 (173)
                      .|+.
T Consensus        89 ~R~~   92 (106)
T 4amh_A           89 AKPG   92 (106)
T ss_dssp             ECCS
T ss_pred             EeCC
Confidence            9864

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=99.67  E-value=8e-16  Score=101.36  Aligned_cols=81  Identities=22%  Similarity=0.277  Sum_probs=73.6

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      .++.|.|.++. .+|||.+.+.  .+++|..|.++++|+++||+.||+|++|||..+.++++.++..+++..++.+.|++
T Consensus         3 ~~r~v~l~~~~-~g~G~~l~~~--~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~v   79 (91)
T 2f5y_A            3 RYRQITIPRGK-DGFGFTICCD--SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLV   79 (91)
T ss_dssp             EEEEEEEECBT-TBTSEEEECS--SSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEE
T ss_pred             ceEEEEEEeCC-CCccEEEecC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            57889999977 7899999864  46999999999999999999999999999999999999999999988888999999


Q ss_pred             EECC
Q psy7774         169 HSDT  172 (173)
Q Consensus       169 ~r~~  172 (173)
                      .|+.
T Consensus        80 ~R~~   83 (91)
T 2f5y_A           80 WRMV   83 (91)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9864

>1wf8_A Neurabin-I; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.67  E-value=3.2e-16  Score=106.27  Aligned_cols=83  Identities=29%  Similarity=0.467  Sum_probs=74.6

Q ss_pred             CCEEEEEEccCCCcccEEEEc---cC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774          89 EPRFLMIETRKCSNLGISLVG---GN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~g---g~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      +.+.|.|.+.. .+|||++.+   +.     ..++||..|.++++|+++| |+.||+|++|||.++.++++.+++.+++.
T Consensus         9 ~~~~v~l~k~~-~glG~~i~~~~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~   87 (107)
T 1wf8_A            9 ELFPVELEKDE-DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRN   87 (107)
T ss_dssp             EEEEEEEECBT-TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHH
T ss_pred             eEEEEEEEECC-CcccEEEEecCCCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            56778888876 799999998   22     4589999999999999999 99999999999999999999999999988


Q ss_pred             CCCeEEEEEEECC
Q psy7774         160 PADKVTVLAHSDT  172 (173)
Q Consensus       160 ~g~~v~l~v~r~~  172 (173)
                      .+..+.|+|.|+.
T Consensus        88 ~~~~v~l~v~R~~  100 (107)
T 1wf8_A           88 TKGNVRFVIGREK  100 (107)
T ss_dssp             CCSEEEEEEEEEC
T ss_pred             CCCeEEEEEEeCC
Confidence            8999999999864

>2r4h_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; transferase, STRU genomics, structural genomics consortium, SGC, ATP-binding; HET: HIS; 2.05A {Homo sapiens}

Probab=99.67  E-value=9.6e-16  Score=104.85  Aligned_cols=83  Identities=23%  Similarity=0.360  Sum_probs=75.9

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      .+++.|.|.+.. .+|||++.++.  ..+++|..|.++++|+++| |+.||+|++|||.++.++++.+++..++..+..+
T Consensus        23 ~~~~~v~l~~~~-~glG~~l~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~g~~v  101 (112)
T 2r4h_A           23 MDFYTVELERGA-KGFGFSLRGGREYNMDLYVLRLAEDGPAERSGKMRIGDEILEINGETTKNMKHSRAIELIKNGGRRV  101 (112)
T ss_dssp             CCEEEEEEECBT-TBTSEEEEECGGGTCCEEEEEECTTSHHHHTTCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEE
T ss_pred             CceEEEEEEcCC-CccCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeE
Confidence            367889999876 78999999875  5689999999999999999 9999999999999999999999999998889999


Q ss_pred             EEEEEEC
Q psy7774         165 TVLAHSD  171 (173)
Q Consensus       165 ~l~v~r~  171 (173)
                      .|+|.|+
T Consensus       102 ~l~v~R~  108 (112)
T 2r4h_A          102 RLFLKRG  108 (112)
T ss_dssp             EEEEECC
T ss_pred             EEEEEeC
Confidence            9999886

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.67  E-value=4.3e-16  Score=107.81  Aligned_cols=82  Identities=27%  Similarity=0.450  Sum_probs=75.4

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      .++.|.|.|.. .+|||++.++.       ..+++|..|.++++|+++| |+.||+|++|||.++.++++.+++.+++..
T Consensus        17 ~~~~v~l~r~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~   95 (120)
T 2eno_A           17 TEEEINLTRGP-SGLGFNIVGGTDQQYVSNDSGIYVSRIKENGAAALDGRLQEGDKILSVNGQDLKNLLHQDAVDLFRNA   95 (120)
T ss_dssp             EEEEEEEECCS-SSCSEEEECCTTTCSSSSCCSEEEEEECSSSHHHHSCCSCTTCEEEEETTEECCSCCHHHHHHHHHHH
T ss_pred             ceEEEEEEECC-CCCCEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            57889999987 89999999865       3589999999999999999 999999999999999999999999999878


Q ss_pred             CCeEEEEEEEC
Q psy7774         161 ADKVTVLAHSD  171 (173)
Q Consensus       161 g~~v~l~v~r~  171 (173)
                      +..+.|+|.|+
T Consensus        96 g~~v~l~v~R~  106 (120)
T 2eno_A           96 GYAVSLRVQHR  106 (120)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEeC
Confidence            89999999886

>1va8_A Maguk P55 subfamily member 5; PDZ domain, palmitoylated 5, PALS1 protein, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.67  E-value=1.4e-15  Score=104.17  Aligned_cols=83  Identities=20%  Similarity=0.332  Sum_probs=75.1

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCC-CCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGL-RTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL-~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      .++.|.+.|....+|||.+.+. ..+++|..|.++++|+++|| +.||+|++|||..+.++++.++..+++..++.+.|+
T Consensus        25 ~~~~v~l~k~~~~~lG~~i~~~-~~gv~V~~V~~~spA~~aGll~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l~  103 (113)
T 1va8_A           25 TVKIVRIEKARDIPLGATVRNE-MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV  103 (113)
T ss_dssp             ECEEEEEEECTTCCCCEEEEEC-SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEE
T ss_pred             ceEEEEEEeCCCCceeEEEEeC-CCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            5788999998866999999865 56899999999999999998 999999999999999999999999998777899999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      |.|..
T Consensus       104 v~r~~  108 (113)
T 1va8_A          104 LIPSS  108 (113)
T ss_dssp             EECCC
T ss_pred             EEECC
Confidence            98763

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.67  E-value=4.9e-16  Score=104.44  Aligned_cols=83  Identities=23%  Similarity=0.383  Sum_probs=75.5

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      .++.|+|.+.. .+|||.+.++. ..+++|..|.+++||+++||+.||+|++|||..+.++++.+++..++..++.+.|+
T Consensus         6 ~~r~v~l~k~~-~g~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   84 (102)
T 2d90_A            6 SGRVVVIKKGS-NGYGFYLRAGPEQKGQIIKDIEPGSPAEAAGLKNNDLVVAVNGKSVEALDHDGVVEMIRKGGDQTTLL   84 (102)
T ss_dssp             SSEEEEEECCS-SSSSCEEEECSSSSSEEEECCCTTSTTTTTTCCTTCEEEEESSCBCTTSCHHHHHHHHHHSTTEEEEE
T ss_pred             CCEEEEEeeCC-CCccEEEEeecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            68999999977 79999998764 56899999999999999999999999999999999999999998888789999999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      +.|+.
T Consensus        85 v~r~~   89 (102)
T 2d90_A           85 VLDKE   89 (102)
T ss_dssp             ECSTT
T ss_pred             EEECC
Confidence            98753

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.67  E-value=2.1e-16  Score=108.94  Aligned_cols=83  Identities=20%  Similarity=0.299  Sum_probs=74.9

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      .+++.|.|.+..+.+|||++.++.        ..+++|..|.++++|+ ++|+.||+|++|||.++.++++.+++.+++.
T Consensus        13 ~~~~~v~l~k~~~~glG~~i~gg~~~~~~~~~~~gv~V~~V~~~spA~-~gL~~GD~I~~Vng~~v~~~~~~~~~~~l~~   91 (117)
T 2csj_A           13 WEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRK   91 (117)
T ss_dssp             EEEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHH
T ss_pred             ceEEEEEEEECCCCccCEEEeCCcCCccccCCCCCEEEEEECCCCccc-ccCCCCCEEEEECCEECCCcCHHHHHHHHhc
Confidence            357889999887789999999875        3479999999999997 8899999999999999999999999999988


Q ss_pred             CCCeEEEEEEEC
Q psy7774         160 PADKVTVLAHSD  171 (173)
Q Consensus       160 ~g~~v~l~v~r~  171 (173)
                      .+..+.|+|.|.
T Consensus        92 ~~~~v~l~v~R~  103 (117)
T 2csj_A           92 SGKIAAIVVKRP  103 (117)
T ss_dssp             SCSEEEEEEEEE
T ss_pred             CCCeEEEEEEEC
Confidence            899999999885

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=99.67  E-value=7.8e-16  Score=101.78  Aligned_cols=83  Identities=19%  Similarity=0.306  Sum_probs=74.6

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      ..+.|.+.|.+ .+|||.+.++. ..+++|..|.++++|+++| |+.||+|++|||.++.++++.+++.+++..++.+.|
T Consensus         4 ~~r~v~l~k~~-~~lG~~i~~~~~~~~~~V~~v~~gspA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l   82 (93)
T 3o46_A            4 SVKIIRLVKNR-EPLGATIKKDEQTGAIIVARIMRGGAADRSGLIHVGDELREVNGIPVEDKRPEEIIQILAQSQGAITF   82 (93)
T ss_dssp             CCEEEEEEESS-SCCCEEEEECTTTCCEEEEEECTTSHHHHHTCCCTTCEEEEETTEESTTSCHHHHHHHHHHCCEEEEE
T ss_pred             cEEEEEEEeCC-CCccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEE
Confidence            46889999976 79999998764 4689999999999999998 999999999999999999999999999888789999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      +|.+..
T Consensus        83 ~v~~~~   88 (93)
T 3o46_A           83 KIIPGS   88 (93)
T ss_dssp             EEECC-
T ss_pred             EEEeCC
Confidence            998753

>2o2t_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 2.70A {Homo sapiens}

Probab=99.66  E-value=2.1e-16  Score=108.78  Aligned_cols=85  Identities=29%  Similarity=0.454  Sum_probs=77.6

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecC-CCCHHHHHHHHhCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLR-AATAEEAAYELAKP  160 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~-~~~~~~~~~~l~~~  160 (173)
                      ..++.|.|.+..+.+|||++.++.     ..+++|..|.++|+|+++| |+.||+|++|||..+. ++++.+++.+++..
T Consensus        19 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~Il~ing~~v~~~~~~~~~~~~l~~~   98 (117)
T 2o2t_A           19 RHVEVFELLKPPSGGLGFSVVGLRSENRGELGIFVQEIQEGSVAHRDGRLKETDQILAINGQALDQTITHQQAISILQKA   98 (117)
T ss_dssp             SCEEEEEEECCSSSCSSCCEEEEECCC--CEEEEECCCCTTSHHHHHCCCCTTCEEEEETTEECCTTSCHHHHHHHHHHC
T ss_pred             CeEEEEEEEECCCCCCCEEEeecccCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCCHHHHHHHHHcC
Confidence            468999999987789999998865     3589999999999999999 9999999999999998 99999999999888


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      +..+.|+|.|+.
T Consensus        99 ~~~v~l~v~R~~  110 (117)
T 2o2t_A           99 KDTVQLVIARGS  110 (117)
T ss_dssp             CSEEEEEEESSC
T ss_pred             CCEEEEEEEeCC
Confidence            999999999874

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.66  E-value=2.5e-16  Score=106.17  Aligned_cols=84  Identities=15%  Similarity=0.236  Sum_probs=74.8

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC--CC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP--AD  162 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~--g~  162 (173)
                      .+++.+.|.+.. .+|||.+.++.  ..+++|..|.++++|+++| |+.||+|++|||.++.++++.+++.+++..  +.
T Consensus         8 ~~~~~v~l~~~~-~g~G~~i~~g~~~~~~~~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~   86 (103)
T 1uep_A            8 YKELDVHLRRME-SGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNG   86 (103)
T ss_dssp             EEEECCEEESSS-SSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEEEeCC-CccCEEEeeecCCCCCeEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            356778898865 89999999865  4689999999999999999 999999999999999999999999999865  89


Q ss_pred             eEEEEEEECC
Q psy7774         163 KVTVLAHSDT  172 (173)
Q Consensus       163 ~v~l~v~r~~  172 (173)
                      .|.|+|.|+.
T Consensus        87 ~v~l~v~R~~   96 (103)
T 1uep_A           87 QVNLTVRRKV   96 (103)
T ss_dssp             EEEEEEEEEC
T ss_pred             cEEEEEEeCC
Confidence            9999999863

>1q3o_A Shank1; PDZ, GKAP, peptide binding protein; 1.80A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1q3p_A 3qjm_A 3qjn_A 3o5n_A*

Probab=99.66  E-value=9.4e-16  Score=104.30  Aligned_cols=83  Identities=22%  Similarity=0.413  Sum_probs=74.5

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC--------------CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHH
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA--------------VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAA  154 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~--------------~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~  154 (173)
                      +++.+.|.+....+|||.+.++..              .+++|..|.++++|+++||+.||+|++|||..+.++++.+++
T Consensus         7 ~~~~v~l~~~~~~g~G~~l~~~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~   86 (109)
T 1q3o_A            7 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV   86 (109)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             CcEEEEEEECCCCCCcEEEEeccCCCCcccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            568899987667899999998763              279999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCeEEEEEEEC
Q psy7774         155 YELAKPADKVTVLAHSD  171 (173)
Q Consensus       155 ~~l~~~g~~v~l~v~r~  171 (173)
                      .+++..+..+.|+|.|.
T Consensus        87 ~~l~~~~~~v~l~v~~~  103 (109)
T 1q3o_A           87 NMIRQGGNTLMVKVVMV  103 (109)
T ss_dssp             HHHHHTTTEEEEEEEEE
T ss_pred             HHHHhCCCEEEEEEEEC
Confidence            99987789999998875

>1uju_A Scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.66  E-value=1.2e-16  Score=109.15  Aligned_cols=84  Identities=35%  Similarity=0.413  Sum_probs=76.2

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-----------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHH
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-----------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYE  156 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-----------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~  156 (173)
                      ..+.|.|.+..+.+|||.+.++.           ..+++|..|.++++|+++| |+.||+|++|||.++.++++.+++.+
T Consensus         9 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~   88 (111)
T 1uju_A            9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             ccEEEEEEECCCCccCEEEECCccccccccccCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            46779999987789999999875           2479999999999999999 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEECC
Q psy7774         157 LAKPADKVTVLAHSDT  172 (173)
Q Consensus       157 l~~~g~~v~l~v~r~~  172 (173)
                      ++..+..+.|+|.|..
T Consensus        89 l~~~g~~v~l~v~r~~  104 (111)
T 1uju_A           89 LRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HSSCSSEEEECCCCCC
T ss_pred             HHcCCCeEEEEEEECC
Confidence            9989999999998763

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=99.66  E-value=1.5e-15  Score=104.85  Aligned_cols=85  Identities=38%  Similarity=0.636  Sum_probs=77.3

Q ss_pred             CCCCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774          86 RSGEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADK  163 (173)
Q Consensus        86 ~~~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~  163 (173)
                      ...+++.|.|.+.. .+|||.+.++. ..+++|..|.++++|+++| |+.||+|++|||..+.++++.+++..++..+..
T Consensus        11 ~~~~~~~v~l~k~~-~glG~~l~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~   89 (119)
T 1tp5_A           11 IPREPRRIVIHRGS-TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQT   89 (119)
T ss_dssp             CCCSCEEEEEECTT-SCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSE
T ss_pred             CCCccEEEEEEECC-CCccEEEecCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            44578999999977 78999999876 4689999999999999999 999999999999999999999998888889999


Q ss_pred             EEEEEEEC
Q psy7774         164 VTVLAHSD  171 (173)
Q Consensus       164 v~l~v~r~  171 (173)
                      +.|++.|+
T Consensus        90 v~l~v~r~   97 (119)
T 1tp5_A           90 VTIIAQYK   97 (119)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEC
Confidence            99999886

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.66  E-value=1.6e-15  Score=103.27  Aligned_cols=84  Identities=31%  Similarity=0.436  Sum_probs=76.2

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA  161 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g  161 (173)
                      .+.+.|.|.+.. .+|||.+.++.     ..+++|..|.++++|+++| |+.||+|++|||.++.++++.+++..++..+
T Consensus         7 ~~~~~v~l~~~~-~glG~~l~~g~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~~~~~~   85 (110)
T 1um1_A            7 GYVFTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             CCEEEEEEECCT-TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             CcEEEEEEEECC-CccCEEEeCCcCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            367889999877 79999999864     3589999999999999999 9999999999999999999999999999889


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      ..+.|+|.|+.
T Consensus        86 ~~v~l~v~R~~   96 (110)
T 1um1_A           86 KKMRFLVAKSD   96 (110)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEeCC
Confidence            99999999864

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=99.66  E-value=1e-15  Score=103.54  Aligned_cols=82  Identities=28%  Similarity=0.461  Sum_probs=72.4

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPAD  162 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~  162 (173)
                      +...|.+ +.. .+|||++.++.     ..+++|..|.++|+|+++| |+.||+|++|||.++.++++.+++..++..+.
T Consensus        11 ~~~~v~l-~~~-~glG~~i~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~   88 (106)
T 3axa_A           11 EIITVTL-KKQ-NGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSS   88 (106)
T ss_dssp             CEEEEEE-ECS-SSCSEEEEEEECSSCSSEEEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCS
T ss_pred             eEEEEEE-CCC-CccCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4566667 544 89999998752     4589999999999999999 99999999999999999999999999988999


Q ss_pred             eEEEEEEECC
Q psy7774         163 KVTVLAHSDT  172 (173)
Q Consensus       163 ~v~l~v~r~~  172 (173)
                      .+.|+|.|+.
T Consensus        89 ~v~l~v~R~~   98 (106)
T 3axa_A           89 VVTLEVAKQG   98 (106)
T ss_dssp             EEEEEEECCC
T ss_pred             eEEEEEEeCC
Confidence            9999999864

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=99.66  E-value=1.3e-15  Score=99.38  Aligned_cols=81  Identities=22%  Similarity=0.297  Sum_probs=71.3

Q ss_pred             EEEEEccCCCcccEEEEccCC--CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEE
Q psy7774          92 FLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAH  169 (173)
Q Consensus        92 ~v~l~~~~~~~lG~~l~gg~~--~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~  169 (173)
                      ++++.+....+|||.+.++.+  .+++|..|.+++||+++||+.||+|++|||.++.++++.++..+++..+..+.|++.
T Consensus         3 ~~~v~~~~~~~lG~~l~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~   82 (87)
T 2pa1_A            3 ALTVDVAGPAPWGFRITGGRDFHTPIMVTKVAERGKAKDADLRPGDIIVAINGESAEGMLHAEAQSKIRQSPSPLRLQLD   82 (87)
T ss_dssp             EEEEEECSSSCCSEEEEEEGGGTEEEEEEEECSSSHHHHTTCCTTCEEEEETTEESTTCCHHHHHHHHHTCCSSEEEEEE
T ss_pred             EEEEEECCCCccCEEEecccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEE
Confidence            345555455899999998763  589999999999999999999999999999999999999999999877799999999


Q ss_pred             ECC
Q psy7774         170 SDT  172 (173)
Q Consensus       170 r~~  172 (173)
                      |+.
T Consensus        83 R~~   85 (87)
T 2pa1_A           83 RIT   85 (87)
T ss_dssp             ECC
T ss_pred             ecC
Confidence            974

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=99.66  E-value=9.4e-16  Score=100.52  Aligned_cols=81  Identities=20%  Similarity=0.315  Sum_probs=71.0

Q ss_pred             CEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      +..+.+..  ..+|||++.++.  ..+++|..|.+++||+++||+.||+|++|||.++.++++.++...++..+..+.|+
T Consensus         4 ~~~v~~~~--~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~   81 (89)
T 2q3g_A            4 SFKVVLEG--PAPWGFRLQGGKDFNVPLSISRLTPGGKAAQAGVAVGDWVLSIDGENAGSLTHIEAQNKIRACGERLSLG   81 (89)
T ss_dssp             EEEEEEES--SSCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHHTCTTEEEEE
T ss_pred             EEEEEEcC--CCcccEEEECcCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCEEEEE
Confidence            35566653  379999999876  45799999999999999999999999999999999999999999998889999999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      +.|+.
T Consensus        82 v~R~~   86 (89)
T 2q3g_A           82 LSRAI   86 (89)
T ss_dssp             EEEEC
T ss_pred             EEeCC
Confidence            98864

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=99.66  E-value=2.7e-15  Score=99.23  Aligned_cols=81  Identities=25%  Similarity=0.427  Sum_probs=72.3

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      ..+|.|.|.+.. .+|||.+.+.  .+++|..|.+++||+++||+.||+|++|||..+.++++.+++..++ .++.+.|+
T Consensus         7 ~~~r~v~l~~~~-~~~G~~l~~~--~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~g~~v~l~   82 (93)
T 2dls_A            7 GVQRCVIIQKDQ-HGFGFTVSGD--RIVLVQSVRPGGAAMKAGVKEGDRIIKVNGTMVTNSSHLEVVKLIK-SGAYVALT   82 (93)
T ss_dssp             CCEEEEEEECSS-SSCCEEEECS--SSCEEEEECSSSTTTTTTCCSSCEEEEETTEECSSSCHHHHHHHHT-SSSEEEEE
T ss_pred             CCCEEEEEEeCC-CceeEEEeCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhc-CCCEEEEE
Confidence            367889999877 8999999863  5799999999999999999999999999999999999988877776 69999999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      |.|+.
T Consensus        83 v~R~~   87 (93)
T 2dls_A           83 LLGSS   87 (93)
T ss_dssp             EECCC
T ss_pred             EEECC
Confidence            99874

>2yt7_A Amyloid beta A4 precursor protein-binding family A member 3; neuron-specific X11L2 protein, neuronal MUNC18-1-interacting protein 3, MINT-3; NMR {Homo sapiens}

Probab=99.66  E-value=1.9e-15  Score=101.53  Aligned_cols=84  Identities=21%  Similarity=0.263  Sum_probs=74.0

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC----CCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhC--CC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA----VGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAK--PA  161 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~----~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g  161 (173)
                      +.+.|.+.+..+.+|||.+.+...    .+++|..|.++++|++ ++|+.||+|++|||..+.+.++.++..+++.  .+
T Consensus         9 ~~~~v~l~k~~g~~lG~~i~~~~~~~~~~~~~V~~V~~~spA~~~ggl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~g   88 (101)
T 2yt7_A            9 NCREVHLEKRRGEGLGVALVESGWGSLLPTAVIANLLHGGPAERSGALSIGDRLTAINGTSLVGLPLAACQAAVRETKSQ   88 (101)
T ss_dssp             CCEEEEEECCTTCCCCEEEEECCCSSSSCCEEEEEECTTSTTGGGSSCCTTCEEEEESSCBCTTSCHHHHHHHHHHTTTS
T ss_pred             ceEEEEEEeCCCCccCEEEEeCCCCCCccCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCC
Confidence            578899998777899999975332    2699999999999999 6799999999999999999999999999975  78


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      ..+.|+|.|.+
T Consensus        89 ~~v~l~v~R~~   99 (101)
T 2yt7_A           89 TSVTLSIVHCP   99 (101)
T ss_dssp             SEEEEEECCCC
T ss_pred             CeEEEEEEeCC
Confidence            99999998864

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=99.66  E-value=2.6e-15  Score=99.88  Aligned_cols=83  Identities=20%  Similarity=0.240  Sum_probs=74.9

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      .+...+.+.+....+|||.+.+ ...+++|..|.++|+|+++| |+.||+|++|||.++.++++.+++..++..++.+.|
T Consensus         7 ~~~~~v~l~~~~~~glG~~~~~-~~~gv~V~~V~~~spA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~~~~~~~~v~l   85 (96)
T 2qkv_A            7 LEKFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVSYALFKGANGKVSM   85 (96)
T ss_dssp             CCCEEEEEECBTTBCCCEEEEE-CSSSEEEEEECTTSCHHHHHHCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEE
T ss_pred             CceEEEEEEeCCCCCccEEEEe-CCCcEEEEEeCCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCcEEE
Confidence            3567888987666899999876 45689999999999999999 999999999999999999999999999998899999


Q ss_pred             EEEEC
Q psy7774         167 LAHSD  171 (173)
Q Consensus       167 ~v~r~  171 (173)
                      +|.|.
T Consensus        86 ~v~R~   90 (96)
T 2qkv_A           86 EVTRP   90 (96)
T ss_dssp             EEECC
T ss_pred             EEEeC
Confidence            99986

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=99.66  E-value=1.9e-15  Score=100.66  Aligned_cols=83  Identities=27%  Similarity=0.363  Sum_probs=73.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC--CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~--~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      +.+.|.+.+.. .+|||.+.++..  .+++|..|.++++|+++| |+.||+|++|||..+.++++.++..+++..+..+.
T Consensus         5 ~~~~v~l~~~~-~~lG~~i~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~g~~v~   83 (97)
T 1n7e_A            5 IIYTVELKRYG-GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT   83 (97)
T ss_dssp             CEEEEEEECTT-SCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             eEEEEEEEeCC-CCcCEEEEcccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            45778887654 789999998763  689999999999999999 99999999999999999999999999988899999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|.|..
T Consensus        84 l~v~R~~   90 (97)
T 1n7e_A           84 LKIKKQT   90 (97)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            9998864

>1x5q_A LAP4 protein; PDZ domain, scribble homolog protein, hscrib, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.65  E-value=3.1e-15  Score=101.80  Aligned_cols=83  Identities=33%  Similarity=0.497  Sum_probs=74.7

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      +.+.+.+.+.. .+|||.+.++.        ..+++|..|.+++||+++||+.||+|++|||..+.++++.+++..++..
T Consensus        15 ~~~~~~l~~~~-~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~   93 (110)
T 1x5q_A           15 EELTLTILRQT-GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGA   93 (110)
T ss_dssp             EEEEEEEECSS-SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             ceEEEEEecCC-CeeeEEEEccccCCccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHhhCC
Confidence            55778888875 89999999763        4689999999999999999999999999999999999999998888889


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      +..+.|+|.|+.
T Consensus        94 g~~v~l~v~R~g  105 (110)
T 1x5q_A           94 GTAVQMRVWRES  105 (110)
T ss_dssp             CSEEEEEEEECS
T ss_pred             CCeEEEEEEECC
Confidence            999999999974

>1wi4_A Synip, syntaxin binding protein 4; syntaxin4-interacting protein, STXBP4 protein, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.65  E-value=1.4e-15  Score=103.68  Aligned_cols=82  Identities=22%  Similarity=0.406  Sum_probs=72.4

Q ss_pred             CCEEEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC-C--
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK-P--  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~-~--  160 (173)
                      +.+.|++.|.  .+|||++.|+.    ..++||..|.++++|+++| |+.||+|++|||.++.+++|++++.+++. .  
T Consensus        15 ~~~~v~l~k~--~glG~~i~gg~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~Il~Vng~~~~~~~~~~~~~~l~~~~~r   92 (109)
T 1wi4_A           15 AFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLR   92 (109)
T ss_dssp             TEEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCS
T ss_pred             cEEEEEEeCC--CccCEEEEeccCCCCCCCEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHccccC
Confidence            5678888774  79999999875    2379999999999999998 99999999999999999999999999974 3  


Q ss_pred             -CCeEEEEEEECC
Q psy7774         161 -ADKVTVLAHSDT  172 (173)
Q Consensus       161 -g~~v~l~v~r~~  172 (173)
                       +..+.|.+.|+.
T Consensus        93 ~~~~~~l~v~R~~  105 (109)
T 1wi4_A           93 SESPWEIAFIRSG  105 (109)
T ss_dssp             SSSCEEEEEECCC
T ss_pred             CCceEEEEEEeCC
Confidence             688999999874

>2i04_A Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1; PDZ, E6 binding, tumor suppressor, peptide binding protein; 2.15A {Mus musculus}

Probab=99.65  E-value=2e-15  Score=98.03  Aligned_cols=79  Identities=18%  Similarity=0.208  Sum_probs=70.1

Q ss_pred             EEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC--CCeEE
Q psy7774          91 RFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP--ADKVT  165 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~--g~~v~  165 (173)
                      .++++.|.. .+|||.+.++.  ..+++|..|.+++||+++| |+.||+|++|||.++.++++.++..+++..  ++.+.
T Consensus         2 ~~v~l~k~~-~g~G~~i~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~   80 (85)
T 2i04_A            2 IHTKLRKSS-RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGASVD   80 (85)
T ss_dssp             EEEEEECBT-TBSSEEEEECCSTTBCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTSCTTCEEE
T ss_pred             EEEEEEECC-CCCCEEEEcccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCCeEE
Confidence            457888876 79999998865  4579999999999999999 999999999999999999999999888764  88999


Q ss_pred             EEEEE
Q psy7774         166 VLAHS  170 (173)
Q Consensus       166 l~v~r  170 (173)
                      |++.|
T Consensus        81 l~v~R   85 (85)
T 2i04_A           81 LELCR   85 (85)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99876

>2w4f_A Protein LAP4; structural protein, phosphoprotein, UBL conjugation, leucine-rich repeat, alternative splicing, cytoplasm, circletail, coiled coil; 1.30A {Homo sapiens}

Probab=99.65  E-value=2.1e-15  Score=100.25  Aligned_cols=83  Identities=33%  Similarity=0.490  Sum_probs=74.4

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      +...+.+.+.. .+|||++.++.        ..+++|..|.+++||+++||+.||+|++|||..+.++++.+++..++..
T Consensus         3 ~~~~v~~~~~~-~glG~~i~~g~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~   81 (97)
T 2w4f_A            3 EELTLTILRQT-GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGA   81 (97)
T ss_dssp             CEEEEEEECBT-TBSSEEEEECTTSCCSBTTBCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             eEEEEEEEeCC-CceeEEEECCccCCcccCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhCC
Confidence            45678888875 89999999764        3689999999999999999999999999999999999999888888889


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      +..+.|+|.|+.
T Consensus        82 g~~v~l~v~R~g   93 (97)
T 2w4f_A           82 GTAVQMRVWRER   93 (97)
T ss_dssp             CSEEEEEEECCS
T ss_pred             CCeEEEEEEeCC
Confidence            999999999874

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.65  E-value=1.9e-15  Score=105.02  Aligned_cols=84  Identities=18%  Similarity=0.227  Sum_probs=75.0

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC--CCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK--PAD  162 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~  162 (173)
                      .+.+.|.|.+.. .+|||.+.++.  ..+++|..|.++++|+++| |+.||+|++|||..+.++++.+++.+++.  .+.
T Consensus        18 ~~~~~v~l~~~~-~glG~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~   96 (123)
T 1ueq_A           18 GTFLSTTLKKSN-MGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQ   96 (123)
T ss_dssp             SEEEEEEEECCT-TSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTC
T ss_pred             CcEEEEEEEeCC-CceeEEEecccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            356778888875 79999999866  4579999999999999999 99999999999999999999999999986  589


Q ss_pred             eEEEEEEECC
Q psy7774         163 KVTVLAHSDT  172 (173)
Q Consensus       163 ~v~l~v~r~~  172 (173)
                      .+.|+|.|..
T Consensus        97 ~v~l~v~R~~  106 (123)
T 1ueq_A           97 SVNLVLCRGY  106 (123)
T ss_dssp             EEEEEEEESC
T ss_pred             eEEEEEEeCC
Confidence            9999999874

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=99.65  E-value=7.4e-16  Score=100.05  Aligned_cols=80  Identities=16%  Similarity=0.292  Sum_probs=70.6

Q ss_pred             EEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          91 RFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      ..|++. ++ .+|||++.++.  ..+++|..|.+++||+++||+.||+|++|||.++.++++.++...++..++.+.|++
T Consensus         3 ~~v~l~-~~-~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v   80 (85)
T 1rgw_A            3 YSVTLT-GP-GPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLTL   80 (85)
T ss_dssp             EEEEEC-CS-SCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEEE
T ss_pred             EEEEEe-CC-CccCEEEEeccCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHcCCCeEEEEE
Confidence            456673 34 79999999876  458999999999999999999999999999999999999999988888888899999


Q ss_pred             EECC
Q psy7774         169 HSDT  172 (173)
Q Consensus       169 ~r~~  172 (173)
                      .|+.
T Consensus        81 ~R~~   84 (85)
T 1rgw_A           81 QKSK   84 (85)
T ss_dssp             ESCC
T ss_pred             EeCC
Confidence            8864

>2fcf_A Multiple PDZ domain protein; adaptor molecule, protein linker, structural genomics, struc genomics consortium, SGC, structural protein; 1.76A {Homo sapiens} SCOP: b.36.1.1

Probab=99.65  E-value=2e-15  Score=101.48  Aligned_cols=84  Identities=36%  Similarity=0.567  Sum_probs=73.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC-----------CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHH
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA-----------VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYE  156 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~-----------~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~  156 (173)
                      .|+++.+.+.....|||.+.++..           .+++|..|.++|||+++| |+.||+|++|||.++.++++.++..+
T Consensus         4 dp~~v~l~~~~~~~lG~~~~~~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~   83 (103)
T 2fcf_A            4 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   83 (103)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCceeEEEEccCCCCcccccCCCCCCEEEEEeCCCCcHHHcCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            579999998776789999987542           589999999999999999 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEECC
Q psy7774         157 LAKPADKVTVLAHSDT  172 (173)
Q Consensus       157 l~~~g~~v~l~v~r~~  172 (173)
                      ++..++.+.|+|.|..
T Consensus        84 l~~~~~~v~l~v~r~~   99 (103)
T 2fcf_A           84 IRKAGNPVVFMVQSII   99 (103)
T ss_dssp             HHTCCSSEEEEEECCC
T ss_pred             HHhCCCcEEEEEEECC
Confidence            9887889999999875

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=4.2e-16  Score=105.44  Aligned_cols=85  Identities=25%  Similarity=0.450  Sum_probs=76.1

Q ss_pred             CCCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          87 SGEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        87 ~~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      +..+|.|.|.|.. .+|||.+.++. ..+++|..|.++++|+++||+.||+|++|||.++.++++.+++..++..++.+.
T Consensus         6 ~~~~r~v~l~k~~-~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~   84 (106)
T 2eei_A            6 SGQPRLCYLVKEG-GSYGFSLKTVQGKKGVYMTDITPQGVAMRAGVLADDHLIEVNGENVEDASHEEVVEKVKKSGSRVM   84 (106)
T ss_dssp             CSSSEEEEEECCS-SSCSCCEECCSSCCSCEECCCCTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHHCSEEE
T ss_pred             CCCCEEEEEEECC-CCCCEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            3478999999964 89999998765 468999999999999999999999999999999999999999988887789999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |++.|..
T Consensus        85 l~v~r~~   91 (106)
T 2eei_A           85 FLLVDKE   91 (106)
T ss_dssp             EEECCTT
T ss_pred             EEEEcCc
Confidence            9998764

>1nf3_C PAR-6B; semi-CRIB motif, switch I and II, PDZ domain, GTPase binding domain, signaling protein; HET: GNP; 2.10A {Mus musculus} SCOP: b.36.1.1 PDB: 2lc6_A 1ry4_A 1x8s_A 2lc7_A 1rzx_A

Probab=99.65  E-value=9.4e-16  Score=107.32  Aligned_cols=86  Identities=19%  Similarity=0.346  Sum_probs=76.8

Q ss_pred             CCCCEEEEEEccC-CCcccEEEEccCC-----------CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHH
Q psy7774          87 SGEPRFLMIETRK-CSNLGISLVGGNA-----------VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEA  153 (173)
Q Consensus        87 ~~~~~~v~l~~~~-~~~lG~~l~gg~~-----------~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~  153 (173)
                      ...++.|.|.|.+ +.+|||++.++..           .+++|..|.++|+|+++| |+.||+|++|||.++.++++.++
T Consensus        27 ~~~~r~v~l~k~~~~~~lG~~i~~~~~~~~~~~g~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~  106 (128)
T 1nf3_C           27 PETHRRVRLCKYGTEKPLGFYIRDGSSVRVTPHGLEKVPGIFISRLVPGGLAQSTGLLAVNDEVLEVNGIEVSGKSLDQV  106 (128)
T ss_dssp             CTTCEEEEECCSSTTSCCCEEEEEEEEEEEETTEEEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEESTTCCHHHH
T ss_pred             CCccEEEEEEECCCCCCccEEEEccccccccccccCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHH
Confidence            4578999999975 5899999987642           479999999999999999 99999999999999999999999


Q ss_pred             HHHHhCCCCeEEEEEEECC
Q psy7774         154 AYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       154 ~~~l~~~g~~v~l~v~r~~  172 (173)
                      +.+++..+..+.|+|.|..
T Consensus       107 ~~~l~~~~~~v~l~v~r~~  125 (128)
T 1nf3_C          107 TDMMIANSRNLIITVRPAN  125 (128)
T ss_dssp             HHHHHHTTTSEEEEEECCC
T ss_pred             HHHHHcCCCeEEEEEEECC
Confidence            9999888889999998864

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=99.64  E-value=3.7e-16  Score=121.69  Aligned_cols=86  Identities=29%  Similarity=0.386  Sum_probs=78.8

Q ss_pred             CCCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774          87 SGEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK  163 (173)
Q Consensus        87 ~~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~  163 (173)
                      ..+++.|.|.|..+.+|||+|.||.  ..++||..|.+|++|++ +||+.||+|++|||+++.+++|.+++.+++..++.
T Consensus        75 ~~~~r~V~L~k~~~~glGf~I~gg~d~~~gi~V~~V~~gspA~~~aGL~~GD~Il~VNG~~v~~~t~~e~v~~l~~~g~~  154 (263)
T 1z87_A           75 LLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKE  154 (263)
T ss_dssp             SCSSEEECCCTTTTCCCCCEEEEETTTTEEEEEEECCTTSHHHHCTTCCSSCEEEEESSCBCTTSCHHHHHHHHHHCCSC
T ss_pred             CCccEEEEEEeCCCCCEeEEEeeccCCCCCEEEEEECCCCHHHHhCCCCCCCEEEEECCEECCCcCHHHHHHHHhcCCCe
Confidence            3478999999987789999999986  46899999999999999 79999999999999999999999999999988999


Q ss_pred             EEEEEEECC
Q psy7774         164 VTVLAHSDT  172 (173)
Q Consensus       164 v~l~v~r~~  172 (173)
                      |.|+|+|..
T Consensus       155 V~L~V~R~~  163 (263)
T 1z87_A          155 VVLEVKYMK  163 (263)
T ss_dssp             CCEEEECCS
T ss_pred             EEEEEEeCc
Confidence            999999863

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.64  E-value=8e-16  Score=106.23  Aligned_cols=85  Identities=16%  Similarity=0.345  Sum_probs=75.2

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCccccc--CCCCCCEEEEECCEecCCCCHHHHHHHHhCCC--
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSA--GLRTGDRILEYNGTDLRAATAEEAAYELAKPA--  161 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~--gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g--  161 (173)
                      ..++.|.+.|....+|||.+.++.  ..+++|..|.++++|+++  ||+.||+|++|||.++.++++.+++.+++..+  
T Consensus        14 ~~~~~v~l~k~~~~~~G~~l~gg~~~~~~v~V~~V~~~spA~~a~gGL~~GD~Il~ing~~v~~~~~~~~~~~~~~~~~~   93 (119)
T 2cs5_A           14 DNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCER   93 (119)
T ss_dssp             SCCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHC
T ss_pred             CCeEEEEEEeCCCCCcCEEEecccCCCCCeEEEEECCCCHHHHhhcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcccc
Confidence            357899999987678999999876  347999999999999998  99999999999999999999999999998664  


Q ss_pred             --CeEEEEEEECC
Q psy7774         162 --DKVTVLAHSDT  172 (173)
Q Consensus       162 --~~v~l~v~r~~  172 (173)
                        ..+.|+|.|+.
T Consensus        94 ~~~~v~l~v~R~~  106 (119)
T 2cs5_A           94 HSGELMLLVRPNA  106 (119)
T ss_dssp             CSSCEEEEEECCC
T ss_pred             CCCEEEEEEEccc
Confidence              58999998863

>1mfg_A ERB-B2 interacting protein; PDZ domain, protein-peptide complex, erbin., signaling protein; 1.25A {Homo sapiens} SCOP: b.36.1.1 PDB: 1mfl_A

Probab=99.64  E-value=3.5e-15  Score=98.90  Aligned_cols=79  Identities=25%  Similarity=0.352  Sum_probs=69.8

Q ss_pred             EEEEEEccCCCcccEEEEccC----------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          91 RFLMIETRKCSNLGISLVGGN----------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~----------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      .+|.+.+.  .+|||++.|+.          ..+++|..|.++++|++ ||+.||+|++|||.++.++++.+++..++..
T Consensus         5 ~~v~l~~~--~~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~~~~   81 (95)
T 1mfg_A            5 IRVRVEKD--PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTF   81 (95)
T ss_dssp             EEEEEECS--SSCSEEEEECBTSCCCSSSTTCCCEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCBHHHHHHHHHHC
T ss_pred             EEEEECCC--CCCCEEEeCCcCccCCccccCCCCEEEEEECCCCchhh-CCCCCCEEEEECCEEcCCCCHHHHHHHhhcC
Confidence            45666664  48999999864          34899999999999999 9999999999999999999999999999888


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      +..+.|+|.|+.
T Consensus        82 ~~~v~l~v~R~~   93 (95)
T 1mfg_A           82 QNTVELIIVREV   93 (95)
T ss_dssp             CSEEEEEEEEEC
T ss_pred             CCeEEEEEEeCC
Confidence            999999999874

>2daz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.64  E-value=1.6e-15  Score=105.47  Aligned_cols=84  Identities=26%  Similarity=0.446  Sum_probs=75.9

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC---CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN---AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADK  163 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~---~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~  163 (173)
                      .+.+.|.|.+.. .+|||++.++.   ..+++|..|.++++|+++| |+.||+|++|||.++.++++.+++..++..+..
T Consensus        24 ~~~~~v~l~k~~-~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~  102 (124)
T 2daz_A           24 GELHIIELEKDK-NGLGLSLAGNKDRSRMSIFVVGINPEGPAAADGRMRIGDELLEINNQILYGRSHQNASAIIKTAPSK  102 (124)
T ss_dssp             SEEEEEEEECCS-SCCCEEEECBSSTTSCCEEEEEECTTSHHHHHTCCCTTCEECEESSCBCTTSCHHHHHHHHHHSCSE
T ss_pred             CceEEEEEEeCC-CccCEEEeccCCCCcCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCe
Confidence            356789999875 89999999875   3589999999999999998 999999999999999999999999999888889


Q ss_pred             EEEEEEECC
Q psy7774         164 VTVLAHSDT  172 (173)
Q Consensus       164 v~l~v~r~~  172 (173)
                      +.|+|.|+.
T Consensus       103 v~l~v~R~~  111 (124)
T 2daz_A          103 VKLVFIRNE  111 (124)
T ss_dssp             EEEEEEECT
T ss_pred             EEEEEEeCC
Confidence            999999874

>2eeg_A PDZ and LIM domain protein 4; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.64  E-value=2e-15  Score=99.98  Aligned_cols=82  Identities=28%  Similarity=0.340  Sum_probs=73.0

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      .++.|.+. ++ .+|||.+.+|.  ..+++|..|.+++||+++||+.||+|++|||..+.++++.++...++..+..+.|
T Consensus         8 ~~~~v~l~-~~-~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l   85 (94)
T 2eeg_A            8 MPHSVTLR-GP-SPWGFRLVGGRDFSAPLTISRVHAGSKAALAALCPGDLIQAINGESTELMTHLEAQNRIKGCHDHLTL   85 (94)
T ss_dssp             CCEEEEEC-CS-SCCSCCEECCTTTTSCCEECCCCSSSHHHHTTCCTTCEEEEETTEETTTCCHHHHHHHHHTCCSCEEE
T ss_pred             ceEEEEEe-CC-CccCEEEECccCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            56778884 34 69999999876  4689999999999999999999999999999999999999999888888999999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      +|.|+.
T Consensus        86 ~v~R~g   91 (94)
T 2eeg_A           86 SVSSGP   91 (94)
T ss_dssp             EEECCS
T ss_pred             EEEeCC
Confidence            998864

>1wg6_A Hypothetical protein (riken cDNA 2810455B10); structural genomics, PDZ domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.36.1.1 PDB: 2koh_A 2k1z_A 2k20_A

Probab=99.64  E-value=7.9e-16  Score=107.63  Aligned_cols=80  Identities=24%  Similarity=0.496  Sum_probs=70.0

Q ss_pred             EEEEccCCCcccEEEEccCC------CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC-----
Q psy7774          93 LMIETRKCSNLGISLVGGNA------VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP-----  160 (173)
Q Consensus        93 v~l~~~~~~~lG~~l~gg~~------~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~-----  160 (173)
                      |.+.+....+|||++.++.+      .++||..|.+++||+++| |+.||+|++|||.++.+++|.+++.+++..     
T Consensus        29 v~l~k~~~~glG~~i~~~~~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~g  108 (127)
T 1wg6_A           29 IPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSMEG  108 (127)
T ss_dssp             EECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCccCeEEecccCCCCCCCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhcccc
Confidence            44444556899999998753      489999999999999988 999999999999999999999999999865     


Q ss_pred             --CCeEEEEEEECC
Q psy7774         161 --ADKVTVLAHSDT  172 (173)
Q Consensus       161 --g~~v~l~v~r~~  172 (173)
                        +..|.|+|.|+.
T Consensus       109 ~~~~~v~l~v~R~~  122 (127)
T 1wg6_A          109 NIRGMIQLVILRRS  122 (127)
T ss_dssp             HHTCEEEEEEEECS
T ss_pred             CCCCEEEEEEEeCC
Confidence              899999999874

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=99.63  E-value=1.5e-15  Score=103.08  Aligned_cols=82  Identities=20%  Similarity=0.244  Sum_probs=73.6

Q ss_pred             CEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      ...|.|.+..+.+|||.+.+ ...|++|..|.++|+|+++| |+.||+|++|||.++.++++.++...++..++.+.|++
T Consensus         3 ~~~v~L~k~~~~glG~~i~~-~~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~~~~~~~~v~l~v   81 (106)
T 2la8_A            3 KFNVDLMKKAGKELGLSLSP-NEIGCTIADLIQGQYPEIDSKLQRGDIITKFNGDALEGLPFQVCYALFKGANGKVSMEV   81 (106)
T ss_dssp             EEEEEECCBSSSTTCCEEEE-CSSSEEEEECCTTSCHHHHTTCCTTCEEEEESSCBCSSSCHHHHHHHHHSCBSCEEEEE
T ss_pred             EEEEEEEeCCCCccCEEEEe-CCCCEEEEEECCCCHHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHhCCCCeEEEEE
Confidence            45688887677899999987 45789999999999999999 99999999999999999999999999998888999999


Q ss_pred             EECC
Q psy7774         169 HSDT  172 (173)
Q Consensus       169 ~r~~  172 (173)
                      .|..
T Consensus        82 ~R~~   85 (106)
T 2la8_A           82 TRPK   85 (106)
T ss_dssp             EECC
T ss_pred             EeCC
Confidence            9863

>2jre_A C60-1 PDZ domain peptide; de novo protein; NMR {Synthetic}

Probab=99.63  E-value=2.3e-15  Score=102.07  Aligned_cols=85  Identities=25%  Similarity=0.343  Sum_probs=74.3

Q ss_pred             CCCEEEEEE-ccCCCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHh
Q psy7774          88 GEPRFLMIE-TRKCSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELA  158 (173)
Q Consensus        88 ~~~~~v~l~-~~~~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~  158 (173)
                      .+.+.+.+. +....+|||++.++.       ..+++|..|.+++||+++| |++||+|++|||..+.++++.+++.+++
T Consensus        11 ~~~~~v~l~r~~~~~~lG~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~   90 (108)
T 2jre_A           11 FSLYSVELFREKDTSSLGISISGMRDQSTTGEATGIYVKSLIPGSAAALDGRIEPNDKILRVDDVNVQGMAQSDVVEVLR   90 (108)
T ss_dssp             CEEEEEEEECCSTTSCCSEEEECCCCCSCSSCCCCCEEEEECTTSHHHHHSSCCSSEEEEEETTEECTTSCHHHHHHHHH
T ss_pred             cEEEEEEEEecCCCCCcCEEEEcccCCCCCCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHH
Confidence            356778885 345689999998863       3489999999999999999 9999999999999999999999998888


Q ss_pred             CCCCeEEEEEEECC
Q psy7774         159 KPADKVTVLAHSDT  172 (173)
Q Consensus       159 ~~g~~v~l~v~r~~  172 (173)
                      ..+..+.|+|.|+.
T Consensus        91 ~~g~~v~l~v~R~~  104 (108)
T 2jre_A           91 NAGNPVRLLLIRRL  104 (108)
T ss_dssp             HHCSEEEEEEEECC
T ss_pred             cCCCeEEEEEEeCC
Confidence            78899999999874

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.63  E-value=2.5e-14  Score=125.46  Aligned_cols=84  Identities=38%  Similarity=0.652  Sum_probs=76.2

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      .+++.|.|.+.. .+|||.+.++. ..+++|..|.+||+|+++| |+.||+|++|||.++.++++++++.+++..++.+.
T Consensus       306 ~~~~~v~l~~~~-~~lG~~i~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~VNg~~v~~~~~~e~~~~l~~~~~~v~  384 (721)
T 2xkx_A          306 REPRRIVIHRGS-TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTVT  384 (721)
T ss_pred             cceEEEEEEECC-CCccEEEeccCCCCCeEEEEeCCCChHHhcCCCccCCEEEEECCEECCCCCHHHHHHHHHhcCCeEE
Confidence            357888998876 78999998875 5699999999999999998 99999999999999999999999999998899999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|.|+.
T Consensus       385 L~v~r~~  391 (721)
T 2xkx_A          385 IIAQYKP  391 (721)
T ss_pred             EEEEeCc
Confidence            9998874

>1q7x_A PDZ2B domain of PTP-BAS (HPTP1E); phosphatase, structural proteomics in europe, spine, structural genomics, hydrolase; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.63  E-value=1.4e-15  Score=103.19  Aligned_cols=84  Identities=32%  Similarity=0.480  Sum_probs=75.9

Q ss_pred             CCCEEEEEEccCCCcccEEEE-----ccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHH
Q psy7774          88 GEPRFLMIETRKCSNLGISLV-----GGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYE  156 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~-----gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~  156 (173)
                      .+.+.|.|.+.. .+|||++.     ||.     ..+++|..|.++|+|+++| |+.||+|++|||.++.++++.+++.+
T Consensus         8 ~~~~~v~l~k~~-~~lG~~i~~~~~~gg~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~   86 (108)
T 1q7x_A            8 GDIFEVELAKND-NSLGISVTVLFDKGGVNTSVRHGGIYVKAVIPQGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   86 (108)
T ss_dssp             SSEEEEEEESSS-CSCCEEESSSSSSBCBCTTSSSCCCBEEEECTTSTHHHHTCCCSSCEEEEETTEECBSCTTSHHHHH
T ss_pred             CcEEEEEEEECC-CCccEEEEEeccCCCccccCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHH
Confidence            367889999876 89999998     764     3689999999999999999 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEECC
Q psy7774         157 LAKPADKVTVLAHSDT  172 (173)
Q Consensus       157 l~~~g~~v~l~v~r~~  172 (173)
                      ++..+..+.|++.|+.
T Consensus        87 ~~~~g~~v~l~v~R~~  102 (108)
T 1q7x_A           87 LRNTGQVVHLLLEKGQ  102 (108)
T ss_dssp             HHHTTSEEEEEEECCC
T ss_pred             HHcCCCeEEEEEEeCC
Confidence            9888999999999864

>3egg_C Spinophilin; PP1, serine/threonine phosphatase, post synapti density, glutametergic receptors, carbohydrate metabolism, cycle, cell division; HET: MES; 1.85A {Rattus norvegicus} PDB: 3egh_C* 3hvq_C 2fn5_A

Probab=99.63  E-value=2.2e-15  Score=110.36  Aligned_cols=82  Identities=29%  Similarity=0.466  Sum_probs=73.7

Q ss_pred             CCEEEEEEccCCCcccEEEEc---cC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774          89 EPRFLMIETRKCSNLGISLVG---GN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~g---g~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      +...|.|.+.. .+|||+|.+   +.     ..++||..|.+|++|+++| |+.||+|++|||.++.++++.+++.+++.
T Consensus        80 ~~~~v~l~k~~-~glG~~i~g~~~g~~~~~~~~gi~V~~V~~gspA~~aG~L~~GD~Il~VNG~~v~~~~~~~~~~~l~~  158 (170)
T 3egg_C           80 ELFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN  158 (170)
T ss_dssp             EEEEEEEECBT-TBSSEEEEEECSSSSCCSSSBEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTBCHHHHHHHHHH
T ss_pred             eEEEEEEEeCC-CeEeEEEEecccCCccccCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            44668888877 799999998   32     3579999999999999988 99999999999999999999999999998


Q ss_pred             CCCeEEEEEEEC
Q psy7774         160 PADKVTVLAHSD  171 (173)
Q Consensus       160 ~g~~v~l~v~r~  171 (173)
                      .+..|.|+|.|+
T Consensus       159 ~g~~v~L~V~R~  170 (170)
T 3egg_C          159 TKGRVRFMIGRE  170 (170)
T ss_dssp             CCSEEEEEEEEC
T ss_pred             CCCEEEEEEEeC
Confidence            999999999984

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=99.63  E-value=4.9e-15  Score=96.87  Aligned_cols=81  Identities=25%  Similarity=0.315  Sum_probs=69.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v~  165 (173)
                      +.+.|+|.|.. .+|||.+.+.. ..+++|..+ +++||+ +||+.||+|++|||..+.++++.+++..++.  .+..+.
T Consensus         3 ~~~~v~l~k~~-~g~G~~~~~~~~~~~~~v~~v-~~spA~-aGl~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~   79 (88)
T 3bpu_A            3 ELITVHIVKGP-MGFGFTIADSPGGGGQRVKQI-VDSPRS-RGLKEGDLIVEVNKKNVQALTHNQVVDMLVESPKGSEVT   79 (88)
T ss_dssp             EEEEEEEECBT-TBSSCEEEECTTSSSEEEEEC-CC--CC-TTCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCEEE
T ss_pred             cEEEEEEEcCC-CceeEEEEecCCCCcEEEEEe-cCChhH-hCCCCCCEEEEECCEEcCCCCHHHHHHHHHhCCCCCEEE
Confidence            56889999977 89999998765 468999887 999999 9999999999999999999999999988874  688999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |++.|+.
T Consensus        80 l~v~R~g   86 (88)
T 3bpu_A           80 LLVQRQT   86 (88)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeCC
Confidence            9999864

>1ufx_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.63  E-value=1.2e-15  Score=102.88  Aligned_cols=83  Identities=28%  Similarity=0.414  Sum_probs=72.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCC--C-EEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC-----
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAV--G-IYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK-----  159 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~--~-i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~-----  159 (173)
                      ..+.|.+.+.. .+|||+|.|+.+.  + +||..|.++++|+++| |+.||+|++|||.++.+++|++++.+++.     
T Consensus         6 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~I~~v~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~~~   84 (103)
T 1ufx_A            6 SGTLVRVKKSA-ATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTK   84 (103)
T ss_dssp             SSEEEEEECCS-SSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCS
T ss_pred             ceEEEEEEcCC-CcCCeEEECCCCCCCCcEEEEEeCCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhcccC
Confidence            46788898766 8999999988742  3 5999999999999988 99999999999999999999999999976     


Q ss_pred             CCCeEEEEEEECC
Q psy7774         160 PADKVTVLAHSDT  172 (173)
Q Consensus       160 ~g~~v~l~v~r~~  172 (173)
                      .++.+.|.+.|..
T Consensus        85 ~~~~i~l~v~r~~   97 (103)
T 1ufx_A           85 DRDYIDFLVTEFN   97 (103)
T ss_dssp             SCSEEEEEECCCC
T ss_pred             CCCeEEEEEEEcc
Confidence            6788999998763

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.62  E-value=1.7e-14  Score=107.83  Aligned_cols=122  Identities=20%  Similarity=0.303  Sum_probs=96.6

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCccccCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTH   80 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   80 (173)
                      +.+++|++++.+|+.+++.|.|.|.|+....                      +.       ....              
T Consensus        66 v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~----------------------~~-------~g~~--------------  102 (200)
T 2qt5_A           66 LAKFRHDEIISLLKNVGERVVLEVEYELPPV----------------------SI-------QGSS--------------  102 (200)
T ss_dssp             CTTSCHHHHHHHHHTCCSEEEEEEEEECCCC----------------------CC-------CCSS--------------
T ss_pred             CCCCCHHHHHHHHHhCCCeEEEEEeccCCCc----------------------cc-------CCCc--------------
Confidence            3578999999999999999999998853210                      00       0000              


Q ss_pred             CCCCCCCCCCEEEEEEccCCCcccEEEEccC------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHH
Q psy7774          81 VCKDERSGEPRFLMIETRKCSNLGISLVGGN------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEA  153 (173)
Q Consensus        81 ~~~~~~~~~~~~v~l~~~~~~~lG~~l~gg~------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~  153 (173)
                           .......+.+.+.. .+|||.+.++.      ..+++|..|.++++|+++| |+.||+|++|||..+.++++.++
T Consensus       103 -----~~~~~~~v~l~~~~-~~lG~~l~~g~~~~~~~~~g~~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~  176 (200)
T 2qt5_A          103 -----VMFRTVEVTLHKEG-NTFGFVIRGGAHDDRNKSRPVVITCVRPGGPADREGTIKPGDRLLSVDGIRLLGTTHAEA  176 (200)
T ss_dssp             -----EEEEEEEEEEECBT-TBCSEEEEEECCSSTTTCEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHH
T ss_pred             -----cceeEEEEEEecCC-CCeEEEEECCCCCCccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHH
Confidence                 00023456665654 78999998764      3589999999999999999 99999999999999999999999


Q ss_pred             HHHHhCCCCeEEEEEEEC
Q psy7774         154 AYELAKPADKVTVLAHSD  171 (173)
Q Consensus       154 ~~~l~~~g~~v~l~v~r~  171 (173)
                      ..+++..+..+.|+|.|+
T Consensus       177 ~~~l~~~~~~v~l~v~R~  194 (200)
T 2qt5_A          177 MSILKQCGQEATLLIEYD  194 (200)
T ss_dssp             HHHHHTTCSEEEEEEEEE
T ss_pred             HHHHHcCCCeEEEEEEEC
Confidence            999988889999999986

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.62  E-value=1.6e-15  Score=106.12  Aligned_cols=85  Identities=26%  Similarity=0.397  Sum_probs=75.5

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      .+.+.|.|.+....+|||.+.++.       ..+++|..|.++++|+++| |+.||+|++|||.++.++++.+++.+++.
T Consensus        14 ~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~   93 (129)
T 2dmz_A           14 FETYNVELVRKDGQSLGIRIVGYVGTSHTGEASGIYVKSVIPGSAAYHNGHIQVNDKIVAVDGVNIQGFANHDVVEVLRN   93 (129)
T ss_dssp             EEEEEEEECCCTTCCCCEEEEEECCCSSSCCCCEEEEEEECTTSHHHHHTCCCSSCBEEEETTBCCTTCCHHHHHHHHHH
T ss_pred             CcEEEEEEEeCCCCCcCEEEEeecCCcccCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHc
Confidence            356788886656689999998853       4689999999999999999 99999999999999999999999999988


Q ss_pred             CCCeEEEEEEECC
Q psy7774         160 PADKVTVLAHSDT  172 (173)
Q Consensus       160 ~g~~v~l~v~r~~  172 (173)
                      .+..+.|+|.|+.
T Consensus        94 ~~~~v~l~v~R~~  106 (129)
T 2dmz_A           94 AGQVVHLTLVRRK  106 (129)
T ss_dssp             CCSSEEEEEEEES
T ss_pred             CCCeEEEEEEeCC
Confidence            8999999999864

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.62  E-value=3.9e-15  Score=102.43  Aligned_cols=83  Identities=41%  Similarity=0.709  Sum_probs=76.2

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      +++.|.+.+.. .+|||.+.++...+++|..|.++++|+++||+.||+|++|||..+.++++.+++..++..++.+.|+|
T Consensus        19 ~~~~v~l~~~~-~~lG~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~g~~v~l~v   97 (117)
T 1uit_A           19 EPRHVKVQKGS-EPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITILA   97 (117)
T ss_dssp             CCEEEEEECSS-CCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEEE
T ss_pred             CCEEEEEEeCC-CCccEEEEccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            67889999876 89999999887789999999999999999999999999999999999999999877778899999999


Q ss_pred             EECC
Q psy7774         169 HSDT  172 (173)
Q Consensus       169 ~r~~  172 (173)
                      .|+.
T Consensus        98 ~r~~  101 (117)
T 1uit_A           98 QYNP  101 (117)
T ss_dssp             CCCS
T ss_pred             EECC
Confidence            8864

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=99.62  E-value=5.3e-15  Score=97.28  Aligned_cols=81  Identities=23%  Similarity=0.287  Sum_probs=71.4

Q ss_pred             CEEEEEEccCCCcccEEEEccCC--CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~~--~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      ++.+.+..  ..+|||++.++..  .+++|..|.++|||+++||+.||+|++|||.++.++.+.++..+++..+..+.|+
T Consensus         4 ~~~v~~~~--~~~~G~~l~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   81 (91)
T 2pkt_A            4 TQQIDLQG--PGPWGFRLVGGKDFEQPLAISRVTPGSKAALANLCIGDVITAIDGENTSNMTHLEAQNRIKGCTDNLTLT   81 (91)
T ss_dssp             EEEEEEES--SSCCSEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             cEEEEECC--CCCCCEEEEccCCCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            35566653  3799999998763  5899999999999999999999999999999999999999999998899999999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      +.|+.
T Consensus        82 v~R~g   86 (91)
T 2pkt_A           82 VARSE   86 (91)
T ss_dssp             EEEEC
T ss_pred             EEECC
Confidence            99864

>2iwq_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, membrane, HOST- interaction, structural genomics consortium, synaptosome, T junction; 1.80A {Homo sapiens}

Probab=99.62  E-value=4.4e-15  Score=103.30  Aligned_cols=85  Identities=35%  Similarity=0.542  Sum_probs=76.0

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-----------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHH
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-----------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAY  155 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-----------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~  155 (173)
                      ..|+.+.+.+....+|||.+.++.           ..+++|..|.++|||+++| |++||+|++|||.++.++++.++..
T Consensus        23 ~~p~~v~l~k~~~~~lGi~v~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~  102 (123)
T 2iwq_A           23 MQPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVE  102 (123)
T ss_dssp             CCCEEEEECCCTTSCCSEEEEECC---------CCCCSEEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             CCCEEEEEEecCCCCccEEEEeccCccccccccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHH
Confidence            467999999877689999998753           2589999999999999999 9999999999999999999999999


Q ss_pred             HHhCCCCeEEEEEEECC
Q psy7774         156 ELAKPADKVTVLAHSDT  172 (173)
Q Consensus       156 ~l~~~g~~v~l~v~r~~  172 (173)
                      +++..++.+.|+|+|..
T Consensus       103 ~l~~~~~~v~l~v~r~~  119 (123)
T 2iwq_A          103 AIRKAGNPVVFMVQSII  119 (123)
T ss_dssp             HHHHCCSSEEEEEECCC
T ss_pred             HHHcCCCeEEEEEEECC
Confidence            99877889999999864

>1n7t_A 99-MER peptide of densin-180-like protein; PDZ domain, C-terminal peptide complex, high affnity ligand, signaling protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2h3l_A

Probab=99.62  E-value=4.6e-15  Score=99.81  Aligned_cols=82  Identities=24%  Similarity=0.336  Sum_probs=72.8

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC----------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHH
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN----------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL  157 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~----------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l  157 (173)
                      .+...|.+.+.+  +|||++.++.          ..+++|..|.+++||++ ||+.||+|++|||.++.++++.+++..+
T Consensus        10 ~~~~~v~l~~~~--~lG~~i~gg~~~~~~p~~~~~~gv~V~~V~~~spA~~-gL~~GD~I~~vng~~v~~~~~~~~~~~~   86 (103)
T 1n7t_A           10 KQEIRVRVEKDP--ELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLL   86 (103)
T ss_dssp             CCCEEEEEECSS--CCCBEEEECTTSSBCSSCSSCCSEECCCBSSSSTTSS-SCCTTCEEEEETTEECSSCCHHHHHHHH
T ss_pred             cEEEEEEEccCC--CccEEEEcccCCCCCccccCCCCEEEEEECCCCchHH-CCCCCCEEEEECCEECCCCCHHHHHHHh
Confidence            356778887754  8999999864          35899999999999999 9999999999999999999999999999


Q ss_pred             hCCCCeEEEEEEECC
Q psy7774         158 AKPADKVTVLAHSDT  172 (173)
Q Consensus       158 ~~~g~~v~l~v~r~~  172 (173)
                      +..+..+.|+|.|+.
T Consensus        87 ~~~g~~v~l~v~R~~  101 (103)
T 1n7t_A           87 KTFQNTVELIIVREV  101 (103)
T ss_dssp             HHCCSEEEEEEECCC
T ss_pred             hcCCCeEEEEEEecC
Confidence            888999999999874

>2eeh_A PDZ domain-containing protein 7; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=5.8e-15  Score=98.85  Aligned_cols=83  Identities=30%  Similarity=0.463  Sum_probs=73.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      .++.|.|.+.....|||.+.++.  ..+++|..|.++++|+++||+.||+|++|||..+.++++.+++..++. +..+.|
T Consensus        10 ~~~~v~l~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~-~~~v~l   88 (100)
T 2eeh_A           10 IIHSVRVEKSPAGRLGFSVRGGSEHGLGIFVSKVEEGSSAERAGLCVGDKITEVNGLSLESTTMGSAVKVLTS-SSRLHM   88 (100)
T ss_dssp             EECCEEECCCSSSSCSEEEECCTTTTCCEEEEEECTTSHHHHHTCCSSCEEEEETTEECSSCCHHHHHHHHHS-CSSEEE
T ss_pred             eEEEEEEEECCCCCccEEEEccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHhhcC-CCEEEE
Confidence            56778998877667999998865  468999999999999999999999999999999999999888888877 899999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      +|.|+.
T Consensus        89 ~v~R~g   94 (100)
T 2eeh_A           89 MVRRMG   94 (100)
T ss_dssp             EEEECS
T ss_pred             EEEECC
Confidence            999874

>1wfg_A Regulating synaptic membrane exocytosis protein 2; PDZ domain, RAB3-interacting molecule, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2css_A 1zub_A

Probab=99.61  E-value=3.4e-15  Score=104.92  Aligned_cols=74  Identities=34%  Similarity=0.577  Sum_probs=66.6

Q ss_pred             CCCcccEEEEccCC-----CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeEEEEEEE
Q psy7774          99 KCSNLGISLVGGNA-----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVTVLAHS  170 (173)
Q Consensus        99 ~~~~lG~~l~gg~~-----~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v~l~v~r  170 (173)
                      .+.+|||++.+|..     .++||..|.++++|+++| |+.||+|++|||.++.++++++++.+++.  .+..|.|+|.|
T Consensus        46 ~~~~lG~~i~gg~~~~~~~~gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~g~~v~l~v~R  125 (131)
T 1wfg_A           46 SGAMLGLKVVGGKMTESGRLCAFITKVKKGSLADTVGHLRPGDEVLEWNGRLLQGATFEEVYNIILESKPEPQVELVVSR  125 (131)
T ss_dssp             SCTTTTEEEEEEEECSSSCEEEEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTCCHHHHHHHHHHTSSSSEEEEEEEE
T ss_pred             CCCCCCEEEecCccCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEEEEc
Confidence            56899999998752     389999999999999999 99999999999999999999999999975  45999999998


Q ss_pred             CC
Q psy7774         171 DT  172 (173)
Q Consensus       171 ~~  172 (173)
                      +.
T Consensus       126 ~g  127 (131)
T 1wfg_A          126 SG  127 (131)
T ss_dssp             EC
T ss_pred             CC
Confidence            63

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=99.61  E-value=6.2e-15  Score=101.03  Aligned_cols=83  Identities=25%  Similarity=0.342  Sum_probs=76.1

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      .|+++.+.+.....|||.+.++. ..+++|..|.+++||+++||+.||+|++|||..+.++++.++...++..+..+.|+
T Consensus        13 dp~~~~l~~~~~~~~G~~l~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   92 (114)
T 2edz_A           13 NPRECKLSKQEGQNYGFFLRIEKDTDGHLIRVIEEGSPAEKAGLLDGDRVLRINGVFVDKEEHAQVVELVRKSGNSVTLL   92 (114)
T ss_dssp             CCEEEEEECCTTCCCSCEEECCTTCCSCEEECCCTTCTTGGGTCCTTCEEEEESSSBCSSSCHHHHHHHHHHTCSEEEEE
T ss_pred             CCEEEEEeCCCCCcccEEEEEecCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            68999999987789999998754 56899999999999999999999999999999999999999999998779999999


Q ss_pred             EEEC
Q psy7774         168 AHSD  171 (173)
Q Consensus       168 v~r~  171 (173)
                      |.|.
T Consensus        93 v~R~   96 (114)
T 2edz_A           93 VLDG   96 (114)
T ss_dssp             EECH
T ss_pred             EEEC
Confidence            9885

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=99.61  E-value=6.3e-15  Score=100.78  Aligned_cols=80  Identities=16%  Similarity=0.186  Sum_probs=70.0

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVTV  166 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v~l  166 (173)
                      +.++|.|.|+. .+|||+|.++. .+.+|..|.+  ++..+||++||+|++|||.++.+++|.+++.+|+.  .|..+.|
T Consensus        12 ~~~~V~L~Kg~-~G~GFsI~~~~-~g~~V~~I~~--~~~~aGL~~GD~Il~VNG~~v~~~~h~evv~~lk~~~~G~~v~L   87 (113)
T 3soe_A           12 LLVTIPLIKGP-KGFGFAIADSP-TGQKVKMILD--SQWCQGLQKGDIIKEIYHQNVQNLTHLQVVEVLKQFPVGADVPL   87 (113)
T ss_dssp             EEEEEEEECBT-TBSSEEEEEET-TEEEEEEESC--GGGSTTCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTCEEEE
T ss_pred             CEEEEEEEECC-CcccEEEeCCC-CCcEEEEecC--hHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEEE
Confidence            56889999986 89999997543 4678999988  46679999999999999999999999999999985  3889999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      +|+|..
T Consensus        88 ~V~R~g   93 (113)
T 3soe_A           88 LILRGG   93 (113)
T ss_dssp             EEEESS
T ss_pred             EEEECC
Confidence            999974

>2e7k_A Maguk P55 subfamily member 2; PDZ domain, MPP2 protein, discs large homolog 2, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.61  E-value=2.2e-15  Score=99.34  Aligned_cols=82  Identities=20%  Similarity=0.264  Sum_probs=73.1

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      .+|.|.|.|..+.+|||++.+ ...+++|..|.+++||+++| |+.||+|++|||.++ +.++.++..+++..++.+.|+
T Consensus         6 ~~r~v~l~k~~~~~lG~~i~~-~~~~v~V~~V~~~spA~~ag~L~~GD~I~~ing~~v-~~~~~~~~~~l~~~~~~v~l~   83 (91)
T 2e7k_A            6 SGRMVGIRKTAGEHLGVTFRV-EGGELVIARILHGGMVAQQGLLHVGDIIKEVNGQPV-GSDPRALQELLRNASGSVILK   83 (91)
T ss_dssp             CSCBCCBCCCTTCCCCEEEEE-SSSSEEEEEECSSSHHHHHCCCCTTCEEEEETTEEC-TTCHHHHHHHHHTCCSSBCEE
T ss_pred             CcEEEEEEECCCCcEeEEEEe-cCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEEC-CCCHHHHHHHHHcCCCeEEEE
Confidence            567888888777899999987 45689999999999999965 999999999999999 999999999998888899999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      +.|..
T Consensus        84 v~~~~   88 (91)
T 2e7k_A           84 ILSGP   88 (91)
T ss_dssp             EECCS
T ss_pred             EEECC
Confidence            98754

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=99.61  E-value=3.2e-15  Score=104.71  Aligned_cols=84  Identities=18%  Similarity=0.205  Sum_probs=74.0

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC--CC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP--AD  162 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~--g~  162 (173)
                      .+...|.|.+.. .+|||.+.++.  ..+++|..|.++++|+++| |+.||+|++|||..+.++++.+++.+++..  +.
T Consensus        17 g~~~~v~l~~~~-~g~G~~i~g~~~~~~~v~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~l~~~~~g~   95 (129)
T 2kpk_A           17 GKFIHTKLRKSS-RGFGFTVVGGDEPDEFLQIKSLVLDGPAALDGKMETGDVIVSVNDTCVLGHTHAQVVKIFQSIPIGA   95 (129)
T ss_dssp             SEEEEEEEEECS-SCCSEEEEEEEETTEEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTSCHHHHHHHHHHSCTTE
T ss_pred             CcEEEEEEEECC-CcccEEEeCccCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            356778888866 79999999865  3479999999999999999 999999999999999999999999999754  88


Q ss_pred             eEEEEEEECC
Q psy7774         163 KVTVLAHSDT  172 (173)
Q Consensus       163 ~v~l~v~r~~  172 (173)
                      .+.|+|.|..
T Consensus        96 ~v~l~v~R~~  105 (129)
T 2kpk_A           96 SVDLELCRGY  105 (129)
T ss_dssp             EEEEEEEECS
T ss_pred             eEEEEEEeCC
Confidence            9999999864

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=99.61  E-value=3.2e-15  Score=99.86  Aligned_cols=80  Identities=28%  Similarity=0.324  Sum_probs=69.8

Q ss_pred             EEEEEccCCCcccEEEEccC---------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCC
Q psy7774          92 FLMIETRKCSNLGISLVGGN---------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPAD  162 (173)
Q Consensus        92 ~v~l~~~~~~~lG~~l~gg~---------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~  162 (173)
                      ++.+.+.. .+|||++.++.         ..+++|..|.++|||+++||+.||+|++|||..+.++++.++...++..++
T Consensus         5 ~v~l~~~~-~~~Gf~l~~~~~~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~   83 (99)
T 3khf_A            5 PIVIHSSG-KKYGFSLRAIRVYMGDSDVYTVHHVVWSVEDGSPAQEAGLRAGDLITHINGESVLGLVHMDVVELLLKSGN   83 (99)
T ss_dssp             CEEEEC-C-CCCCEEEEEEEEESSSSSCEEEEEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHHSCS
T ss_pred             CEEEEeCC-CCCcEEEEecccccCccccccCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCC
Confidence            36777755 89999998643         126789999999999999999999999999999999999999999999999


Q ss_pred             eEEEEEEECC
Q psy7774         163 KVTVLAHSDT  172 (173)
Q Consensus       163 ~v~l~v~r~~  172 (173)
                      .+.|++.|..
T Consensus        84 ~v~l~v~r~~   93 (99)
T 3khf_A           84 KISLRTTALE   93 (99)
T ss_dssp             EEEEEEECSC
T ss_pred             EEEEEEEECC
Confidence            9999999864

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=99.60  E-value=4.6e-15  Score=102.38  Aligned_cols=84  Identities=25%  Similarity=0.406  Sum_probs=72.4

Q ss_pred             CCEEEEEEccCCCcccEEEEccC---CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCC-Ce
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN---AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA-DK  163 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~---~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g-~~  163 (173)
                      ..+.+.+.+..+.+|||.+.++.   ..+++|..|.+++||+++| |+.||+|++|||..+.++++.+++.+++..+ ..
T Consensus        15 ~~~~v~l~~~~~~~lG~~i~g~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~l~~~~~~~   94 (119)
T 1x6d_A           15 GIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPR   94 (119)
T ss_dssp             TEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSS
T ss_pred             CeEEEEEEeCCCCccCEEEeCCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCe
Confidence            56778888877789999999876   3589999999999999999 9999999999999999999999999997654 44


Q ss_pred             EEEEEEECC
Q psy7774         164 VTVLAHSDT  172 (173)
Q Consensus       164 v~l~v~r~~  172 (173)
                      +.+++.|+.
T Consensus        95 ~~l~v~R~~  103 (119)
T 1x6d_A           95 QAVIVTRKL  103 (119)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEcCC
Confidence            557777763

>3k1r_A Harmonin; protein-protein complex, alternative splicing, coiled coil, deafness, hearing, non-syndromic deafness, polymorphism; 2.30A {Homo sapiens} PDB: 2kbq_A 2kbr_A 2lsr_A

Probab=99.60  E-value=7.4e-15  Score=109.49  Aligned_cols=84  Identities=23%  Similarity=0.389  Sum_probs=76.6

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      ..++.|.+.+.++.+|||++.++.  ..+++|..|.+||+|+++||+.||+|++|||..+.++++.+++..++. +..+.
T Consensus        83 ~~~~~v~l~k~~~~~lG~~i~~~~~~~~~~~V~~V~~gspA~~aGL~~GD~Il~vng~~v~~~~~~~~~~~l~~-~~~v~  161 (192)
T 3k1r_A           83 RKLKEVRLDRLHPEGLGLSVRGGLEFGCGLFISHLIKGGQADSVGLQVGDEIVRINGYSISSCTHEEVINLIRT-EKTVS  161 (192)
T ss_dssp             SSCEEEEEETTSTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHTS-SSEEE
T ss_pred             CceEEEEEEeCCCCceeEEEEcccccCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHcC-CCeEE
Confidence            467899999986789999998875  458999999999999999999999999999999999999999998888 99999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|.|..
T Consensus       162 l~v~r~g  168 (192)
T 3k1r_A          162 IKVRHIG  168 (192)
T ss_dssp             EEEEECC
T ss_pred             EEEEECC
Confidence            9999864

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=99.60  E-value=5.8e-15  Score=101.33  Aligned_cols=83  Identities=36%  Similarity=0.553  Sum_probs=74.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC---CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA---VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~---~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      +.+.+.+.+.. .+|||.+.++.+   .+++|..|.++++|+++| |+.||+|++|||..+.++++.+++.+++..+..+
T Consensus        17 ~~~~v~l~~~~-~glG~~l~~~~~~~~~gv~V~~V~~~spA~~aG~L~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v   95 (116)
T 2dm8_A           17 QEMIIEISKGR-SGLGLSIVGGKDTPLNAIVIHEVYEEGAAARDGRLWAGDQILEVNGVDLRNSSHEEAITALRQTPQKV   95 (116)
T ss_dssp             SCEEEEEECCS-SCCCCCCBCCTTSSCSSEECCCCCSSSHHHHHTCCCTTCEEEEETTEECSSSCHHHHHHHHHTCCSEE
T ss_pred             CEEEEEEEECC-CcccEEEeCCCCCCcCCEEEEEECCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            56888898876 899999998763   589999999999999999 9999999999999999999999999998888999


Q ss_pred             EEEEEECC
Q psy7774         165 TVLAHSDT  172 (173)
Q Consensus       165 ~l~v~r~~  172 (173)
                      .|+|.|+.
T Consensus        96 ~l~v~R~~  103 (116)
T 2dm8_A           96 RLVVYRDE  103 (116)
T ss_dssp             EEEEECCS
T ss_pred             EEEEEeCC
Confidence            99998864

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.60  E-value=2.5e-15  Score=102.64  Aligned_cols=84  Identities=39%  Similarity=0.656  Sum_probs=76.5

Q ss_pred             CCCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          87 SGEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        87 ~~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      ..+++.|.|.+.. .+|||.+.++. ..+++|..|.++++|+++| |+.||+|++|||..+.++++.+++.+++..+..+
T Consensus        13 ~~~~~~v~l~k~~-~glG~~l~~~~~~~gv~V~~V~~~s~A~~aG~L~~GD~Il~Vng~~v~~~~~~~~~~~~~~~~~~v   91 (113)
T 1um7_A           13 AREPRKIILHKGS-TGLGFNIVGGEDGEGIFVSFILAGGPADLSGELRRGDRILSVNGVNLRNATHEQAAAALKRAGQSV   91 (113)
T ss_dssp             CCSEEEEEEECCS-SCSSBCCBCCSTTCCCBCCCBCSSSHHHHTTCCCTTCEEEEESSCBCTTCCHHHHHHHHHSCCSEE
T ss_pred             CCceEEEEEEECC-CcccEEEEeccCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcE
Confidence            3478999999876 89999998876 4789999999999999999 9999999999999999999999998888889999


Q ss_pred             EEEEEEC
Q psy7774         165 TVLAHSD  171 (173)
Q Consensus       165 ~l~v~r~  171 (173)
                      .|+|.|+
T Consensus        92 ~l~v~r~   98 (113)
T 1um7_A           92 TIVAQYR   98 (113)
T ss_dssp             EEEEECC
T ss_pred             EEEEEEC
Confidence            9999886

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=99.60  E-value=1.8e-15  Score=103.52  Aligned_cols=83  Identities=29%  Similarity=0.460  Sum_probs=73.7

Q ss_pred             CCEEEEEEccCCCcccEEEEc---cC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774          89 EPRFLMIETRKCSNLGISLVG---GN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~g---g~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      +.+.|.|.+.. .+|||++.+   +.     ..+++|..|.++|+|+++| |+.||+|++|||.++.++++.+++.+++.
T Consensus         4 ~~~~v~l~k~~-~glG~~l~~~~~~~~~~~~~~g~~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~   82 (113)
T 2g5m_B            4 ELFPVELEKDS-EGLGISIIGMGAGADMGLEKLGIFVKTVTEGGAAHRDGRIQVNDLLVEVDGTSLVGVTQSFAASVLRN   82 (113)
T ss_dssp             EEEEEECCCCS-SCCCCEEEEEECCCCSSSCCEEEEEEECCTTSHHHHHTCSCTTCBEEEETTEECSSCCHHHHHHHHHH
T ss_pred             EEEEEEEEeCC-CCCCEEEEecCCCCcCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHhc
Confidence            35667787766 899999988   32     4589999999999999999 99999999999999999999999999988


Q ss_pred             CCCeEEEEEEECC
Q psy7774         160 PADKVTVLAHSDT  172 (173)
Q Consensus       160 ~g~~v~l~v~r~~  172 (173)
                      .+..+.|+|.|+.
T Consensus        83 ~g~~v~l~v~R~~   95 (113)
T 2g5m_B           83 TKGRVRFMIGRER   95 (113)
T ss_dssp             SCSSCEEEEEECC
T ss_pred             CCCeEEEEEEeCC
Confidence            8999999999874

>2gzv_A PRKCA-binding protein; protein kinase C, PDZ domain, structural genomics, structura genomics consortium, SGC, signaling protein; 1.12A {Homo sapiens} PDB: 2pku_A

Probab=99.60  E-value=1.4e-14  Score=99.41  Aligned_cols=83  Identities=23%  Similarity=0.320  Sum_probs=74.4

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC--CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~--~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      .++.|.+.+....+|||.+.++..  .+++|..|.++|+|+++| |+.||+|++|||.++.+.++.++..+++..++.+.
T Consensus        24 ~~~~V~l~~~~~~~lG~~l~~~~~~~~~~~V~~V~~gspA~~aG~L~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~~~v~  103 (114)
T 2gzv_A           24 VPGKVTLQKDAQNLIGISIGGGAQYCPCLYIVQVFDNTPAALDGTVAAGDEITGVNGRSIKGKTKVEVAKMIQEVKGEVT  103 (114)
T ss_dssp             CCEEEEEECCTTSCCSEEEEECCC--CCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEE
T ss_pred             CCEEEEEEECCCCcEeEEEEeCCCCCCCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            679999999886779999998764  479999999999999999 99999999999999999999999999987777889


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      |+|.+.
T Consensus       104 l~v~~~  109 (114)
T 2gzv_A          104 IHYNKL  109 (114)
T ss_dssp             EEEECC
T ss_pred             EEEEec
Confidence            988764

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=99.60  E-value=1.6e-14  Score=98.43  Aligned_cols=83  Identities=25%  Similarity=0.431  Sum_probs=73.1

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC-----CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC--C
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA-----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK--P  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~-----~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~  160 (173)
                      +.+.+.+.+.. .+|||.+.++..     .+++|..|.++++|+++| |+.||+|++|||..+.++++.++..+++.  .
T Consensus        11 ~~~~~~l~~~~-~glG~~~~~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~   89 (111)
T 2koj_A           11 KRLNIQLKKGT-EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLAGKSQEEVVSLLRSTKM   89 (111)
T ss_dssp             EEEEEEEECBT-TBTCEEEEECSCSSSSSSCEEEEEECSSSHHHHHCSSCTTCEEEEETTEECTTSCHHHHHHHHHHCCC
T ss_pred             cEEEEEEEECC-CccCEEEEeccCCCCCCcCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCC
Confidence            45677787765 899999987652     689999999999999999 99999999999999999999999988875  4


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      +..+.|+|.|+.
T Consensus        90 g~~v~l~v~R~~  101 (111)
T 2koj_A           90 EGTVSLLVFRQE  101 (111)
T ss_dssp             SSEEEEEEEECC
T ss_pred             CCeEEEEEEeCC
Confidence            899999999874

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.60  E-value=3.1e-15  Score=100.73  Aligned_cols=83  Identities=19%  Similarity=0.319  Sum_probs=73.0

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      .+...|.+. ++ .+|||++.++.  ..+++|..|.++++|+++||+.||+|++|||..+.++++.+++..++..++.+.
T Consensus         4 g~~~~v~l~-~~-~~~G~~l~gg~~~~~~v~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~~~g~~v~   81 (103)
T 1wf7_A            4 GSSGSVSLV-GP-APWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLN   81 (103)
T ss_dssp             CCCEEEEEE-SS-SCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEE
T ss_pred             CCEEEEEEe-CC-CccCEEEeccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            356788887 33 79999999876  346999999999999999999999999999999999999999988887789999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|.|+.
T Consensus        82 l~v~R~g   88 (103)
T 1wf7_A           82 MTLQRAS   88 (103)
T ss_dssp             EEECCCS
T ss_pred             EEEEeCC
Confidence            9998864

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.59  E-value=1.6e-15  Score=101.98  Aligned_cols=83  Identities=25%  Similarity=0.402  Sum_probs=73.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC--CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~--~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      +.+.+.+.+.. .+|||.+.++.+  .+++|..|.++++|+++| |+.||+|++|||.++.++++.+++..++..+..+.
T Consensus        11 ~~~~v~l~~~~-~g~G~~~~~~~~~~~~~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v~   89 (103)
T 1wfv_A           11 DYFTVDMEKGA-KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRVR   89 (103)
T ss_dssp             CCEECCEECCT-TSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEEC
T ss_pred             eEEEEEEecCC-CcCCEEEeccccCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            56778888766 789999987763  489999999999999999 99999999999999999999999988887889999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|.|+.
T Consensus        90 l~v~R~~   96 (103)
T 1wfv_A           90 LLLKRGT   96 (103)
T ss_dssp             EEEECTT
T ss_pred             EEEEECC
Confidence            9999864

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.58  E-value=8.4e-15  Score=101.59  Aligned_cols=85  Identities=26%  Similarity=0.350  Sum_probs=75.1

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      .++++|.|.+....+|||.+.++.      ..+++|..|.++++|+++| |+.||+|++|||..+.++++.++..+++..
T Consensus        14 ~~~~~v~l~k~~~~glG~~l~~~~~~~~~~~~~~~V~~V~~~spA~~aG~L~~GD~I~~ing~~v~~~~~~~~~~~l~~~   93 (122)
T 1v5q_A           14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             ceeEEEEEEeCCCCccCEEEecccccCCcCCCCcEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            367889998886789999999762      4579999999999999999 999999999999999999999999988743


Q ss_pred             --CCeEEEEEEECC
Q psy7774         161 --ADKVTVLAHSDT  172 (173)
Q Consensus       161 --g~~v~l~v~r~~  172 (173)
                        +..+.|+|.|+.
T Consensus        94 ~~g~~v~l~v~R~~  107 (122)
T 1v5q_A           94 SITSKVTLEIEFDV  107 (122)
T ss_dssp             TTTTCEEEEEEEEC
T ss_pred             CCCCeEEEEEEECC
Confidence              889999999864

>2edp_A Fragment, shroom family member 4; APX/shroom family member, KIAA1202 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=7.7e-15  Score=98.32  Aligned_cols=83  Identities=19%  Similarity=0.331  Sum_probs=72.4

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~-gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      +.+.+.+.+....+|||.+.++.  ..+++|..|.+++||+++ ||++||+|++|||.++.++ +.+++..++..+..+.
T Consensus         9 ~~~~~~v~~~~~~~~G~~~~gg~~~~~~v~V~~V~~~spA~~agGL~~GD~I~~ing~~v~~~-~~~~~~~~~~~~~~v~   87 (100)
T 2edp_A            9 SFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGTPLYGS-RQEALILIKGSFRILK   87 (100)
T ss_dssp             CCEEEEEECCSCSCCCCCEEEEGGGTEEEEECCCCTTSHHHHHTSCCTTCEEEEETTEECCSC-SHHHHHHHHTCCSSCE
T ss_pred             CcEEEEEEECCCCCcCEEEeccCCCCCCeEEEEECCCCHHHHcCCCCCCCEEEEECCEEccch-HHHHHHHHHhCCCeEE
Confidence            55677777666579999999876  347999999999999998 9999999999999999987 8888888888889999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|.|+.
T Consensus        88 l~v~R~~   94 (100)
T 2edp_A           88 LIVRRRN   94 (100)
T ss_dssp             EEEEECC
T ss_pred             EEEEeCC
Confidence            9999974

>2vsv_A Rhophilin-2; scaffold protein, RHO GTPase binding, protein-binding, RHOB, nitration, cytoplasm, PDZ domain, CAsp8; 1.82A {Homo sapiens}

Probab=99.58  E-value=1.4e-14  Score=98.65  Aligned_cols=81  Identities=23%  Similarity=0.261  Sum_probs=71.8

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe-EEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK-VTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~-v~l~  167 (173)
                      .+|.|.|.|.+ .+|||.+.+.  .+++|..|.+++||+++||+.||+|++|||.++.++++.++..+++..++. +.|+
T Consensus        23 ~~r~v~l~k~~-~~~G~~l~~~--~~v~V~~V~~gspA~~AGL~~GD~Il~VnG~~v~~~~~~dv~~~i~~~~~~~v~l~   99 (109)
T 2vsv_A           23 MPRSIRFTAEE-GDLGFTLRGN--APVQVHFLDPYCSASVAGAREGDYIVSIQLVDCKWLTLSEVMKLLKSFGEDEIEMK   99 (109)
T ss_dssp             SCEEEEECCGG-GCCCEEEESS--SSCEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTSCEEEE
T ss_pred             CCEEEEEEeCC-CceeEEEeCC--CCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEEEE
Confidence            57999999976 8999999753  468999999999999999999999999999999999999999999876664 9999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      |.|..
T Consensus       100 V~~~~  104 (109)
T 2vsv_A          100 VVSLL  104 (109)
T ss_dssp             EESCC
T ss_pred             EEECC
Confidence            98763

>2jxo_A Ezrin-radixin-moesin-binding phosphoprotein 50; nherf-1, PDZ domain, PDZ2, acetylation, cell projection, membrane, polymorphism; NMR {Homo sapiens}

Probab=99.58  E-value=1.6e-14  Score=96.24  Aligned_cols=83  Identities=23%  Similarity=0.381  Sum_probs=71.6

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCC-eEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPAD-KVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~-~v~  165 (173)
                      ..++.+.+.+.. .+|||.+.++. ..+++|..|.++|||+++||+.||+|++|||..+.++++.++..+++...+ .+.
T Consensus         8 ~~~~~~~l~~~~-~g~G~~~~~~~~~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~   86 (98)
T 2jxo_A            8 LRPRLCTMKKGP-SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL   86 (98)
T ss_dssp             SCCEEEEEECTT-TCCCEEEECCCSSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEE
T ss_pred             CCcEEEEEEeCC-CcccEEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEE
Confidence            357889999876 79999998766 458999999999999999999999999999999999999999999976544 556


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      |++.|+
T Consensus        87 l~v~R~   92 (98)
T 2jxo_A           87 LVVDRE   92 (98)
T ss_dssp             EECCHH
T ss_pred             EEEECC
Confidence            877764

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.58  E-value=4.2e-15  Score=98.44  Aligned_cols=80  Identities=23%  Similarity=0.323  Sum_probs=70.0

Q ss_pred             EEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEE
Q psy7774          93 LMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHS  170 (173)
Q Consensus        93 v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r  170 (173)
                      +.+.+....+|||++.++.  ..+++|..|.+++||+++||+.||+|++|||..+.++++.++..+++..+..+.|+|.|
T Consensus         8 ~~~~~~~~~~lG~~l~~g~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R   87 (94)
T 1vb7_A            8 LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQLDR   87 (94)
T ss_dssp             EEEEECSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEEEC
T ss_pred             EEEEecCCCCccEEEecccCCCCCeEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCcEEEEEEE
Confidence            4444445579999998866  35899999999999999999999999999999999999999999998777999999998


Q ss_pred             CC
Q psy7774         171 DT  172 (173)
Q Consensus       171 ~~  172 (173)
                      +.
T Consensus        88 ~g   89 (94)
T 1vb7_A           88 SS   89 (94)
T ss_dssp             CC
T ss_pred             CC
Confidence            74

>3tsv_A Tight junction protein ZO-1; PDZ, scaffolding, JAM, cell adhesion; 1.99A {Homo sapiens} PDB: 3shu_A

Probab=99.58  E-value=1.8e-14  Score=100.29  Aligned_cols=81  Identities=33%  Similarity=0.521  Sum_probs=70.5

Q ss_pred             CEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVL  167 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~  167 (173)
                      .+.+.+.+  +.+|||.+.++...+++|..|.+++||+++||+.||+|++|||..+.++++.++...+.  ..+..+.|+
T Consensus        30 ~~~~~~~~--~~~lG~~l~~~~~~gv~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~~~~~l~~~~~g~~v~l~  107 (124)
T 3tsv_A           30 MKLVKFRK--GDSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL  107 (124)
T ss_dssp             CEEEEEEC--SSCCCEEEEECTTSCEEEEEECTTCHHHHTTCCTTEEEEEETTEECSSCCHHHHHHHHHHSCTTCEEEEE
T ss_pred             eEEEEcCC--CCceeEEEecCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE
Confidence            34444443  47999999987778999999999999999999999999999999999999999988776  688999999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      |+|+.
T Consensus       108 v~R~~  112 (124)
T 3tsv_A          108 AQKKK  112 (124)
T ss_dssp             EEECH
T ss_pred             EEECC
Confidence            99863

>2iwn_A Multiple PDZ domain protein; SGC, MPDZ, MUPP1, MUPP- 1, HOST-virus interaction, structural genomics consortium, synaptosome, tight junction; 1.35A {Homo sapiens}

Probab=99.58  E-value=2.3e-14  Score=95.03  Aligned_cols=81  Identities=25%  Similarity=0.359  Sum_probs=71.9

Q ss_pred             CEEEEEEccCCCcccEEEEccC------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCC
Q psy7774          90 PRFLMIETRKCSNLGISLVGGN------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPAD  162 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~  162 (173)
                      ...+.+.+.. .+|||.+.++.      ..+++|..|.++++|+++| |+.||+|++|||..+.++++.+++..++..+.
T Consensus         5 ~~~v~l~~~~-~~lG~~i~~~~~~~~~~~~~~~V~~v~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~   83 (97)
T 2iwn_A            5 TFDVELTKNV-QGLGITIAGYIGDKKLEPSGIFVKSITKSSAVEHDGRIQIGDQIIAVDGTNLQGFTNQQAVEVLRHTGQ   83 (97)
T ss_dssp             EEEEEEECBT-TBSCEEEECCCCC----CCCCEEEEECTTCHHHHHCCCCTTCEEEEETTEECTTSCHHHHHHHHHTCCS
T ss_pred             EEEEEEecCC-CCCcEEEEccCCCCCCCCCCEEEEEeCCCChHHhCCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            4567777665 78999999863      4689999999999999999 99999999999999999999999988888999


Q ss_pred             eEEEEEEEC
Q psy7774         163 KVTVLAHSD  171 (173)
Q Consensus       163 ~v~l~v~r~  171 (173)
                      .+.|+|.|+
T Consensus        84 ~v~l~v~r~   92 (97)
T 2iwn_A           84 TVLLTLMRR   92 (97)
T ss_dssp             EEEEEEEEE
T ss_pred             eEEEEEEeC
Confidence            999999885

>2z17_A Pleckstrin homology SEC7 and coiled-coil domains- binding protein; PDZ domain, cytoplasm, membrane, polymorphism, protein binding; 2.70A {Homo sapiens}

Probab=99.58  E-value=1e-14  Score=98.37  Aligned_cols=81  Identities=16%  Similarity=0.273  Sum_probs=71.1

Q ss_pred             CCCEEEEEEccCCCcccEEEEcc---------CCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGG---------NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA  158 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg---------~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~  158 (173)
                      ..++.+.+.+....+|||.+.+.         ...+++|..|.++++|+++||+.||+|++|||.++.++++.++..+++
T Consensus        14 ~~~~~v~l~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~V~~V~~~spA~~aGl~~GD~I~~vng~~v~~~~~~~~~~~l~   93 (104)
T 2z17_A           14 SQRKLVTVEKQDNETFGFEIQSYRPQNQNACSSEMFTLICKIQEDSPAHCAGLQAGDVLANINGVSTEGFTYKQVVDLIR   93 (104)
T ss_dssp             SCCCEEEEECCTTSCCSEEEEECCCCCCSSSCCSCCEEEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCHHHHHHHHH
T ss_pred             CcceEEEEEeCCCCCccEEEEeeecccCCcccCCCCeEEEEECCCChHHHcCCCCCCEEEEECCEEcCCCCHHHHHHHHH
Confidence            46788889987768999999872         245899999999999999999999999999999999999999999998


Q ss_pred             CCCCeEEEEE
Q psy7774         159 KPADKVTVLA  168 (173)
Q Consensus       159 ~~g~~v~l~v  168 (173)
                      ..++.+.|+|
T Consensus        94 ~~~~~v~l~v  103 (104)
T 2z17_A           94 SSGNLLTIET  103 (104)
T ss_dssp             HTTTEEEEEC
T ss_pred             hCCCcEEEEE
Confidence            7677888765

>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}

Probab=99.57  E-value=3.1e-14  Score=124.93  Aligned_cols=115  Identities=24%  Similarity=0.349  Sum_probs=97.0

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCccccCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTSTLTRTH   80 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~   80 (173)
                      +.+++|++++.+|+.+++.|+|+|.|+...                        .                         
T Consensus       122 v~~~~~~~~~~~l~~~g~~v~l~v~R~~~~------------------------~-------------------------  152 (721)
T 2xkx_A          122 VREVTHSAAVEALKEAGSIVRLYVMRRKPP------------------------A-------------------------  152 (721)
T ss_pred             CCCCCHHHHHHHhhccccccceEEEecccc------------------------c-------------------------
Confidence            467899999999999999999999875321                        0                         


Q ss_pred             CCCCCCCCCCEEEEEEccCCCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHH
Q psy7774          81 VCKDERSGEPRFLMIETRKCSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEE  152 (173)
Q Consensus        81 ~~~~~~~~~~~~v~l~~~~~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~  152 (173)
                             .....|.|.+.. .+|||++.++.       ..|++|..|.+|++|+++| |+.||+|++|||..+.++++.+
T Consensus       153 -------~~~~~v~l~k~~-~~lG~~i~~~~~~~~~~~~~gv~V~~V~~gs~A~~aG~L~~GD~Il~Vng~~v~~~~~~~  224 (721)
T 2xkx_A          153 -------EKVMEIKLIKGP-KGLGFSIAGGVGNQHIPGDNSIYVTKIIEGGAAHKDGRLQIGDKILAVNSVGLEDVMHED  224 (721)
T ss_pred             -------ccceeeeeeeec-CCCceeeccCCCccccCCCCceEEEEeCCCCchhhcCCCCCCCEEEEECCeeCCCCCHHH
Confidence                   013456676654 68999998763       3589999999999999998 9999999999999999999999


Q ss_pred             HHHHHhCCCCeEEEEEEECC
Q psy7774         153 AAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       153 ~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ++.+++..+..|.|+|.|+.
T Consensus       225 ~~~~l~~~~~~v~l~V~R~g  244 (721)
T 2xkx_A          225 AVAALKNTYDVVYLKVAKPS  244 (721)
T ss_pred             HHHHHHcCCCeEEEEEEeCC
Confidence            99999888999999998864

>3gsl_A Disks large homolog 4; PDZ domain, tandem, PSD-95, DLG4, SAP-90, GLUR6, cell juncti membrane, lipoprotein, membrane, palmitate, phosphoprotein; 2.05A {Rattus norvegicus} PDB: 3zrt_A 2ka9_A

Probab=99.57  E-value=2e-14  Score=106.53  Aligned_cols=82  Identities=28%  Similarity=0.410  Sum_probs=75.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      +.+.++|.+.. .+|||++.++.       ..++||..|.++++|+++| |+.||+|++|||.++.++++.+++..++..
T Consensus         5 ~~~~v~l~~~~-~~lG~~i~~g~~~~~~~~~~g~~V~~V~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~~~~~   83 (196)
T 3gsl_A            5 EYEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEA   83 (196)
T ss_dssp             EEEEEEEECBT-TBSSEEEECCTTSCTTSSCCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHTS
T ss_pred             EEEEEEEEECC-CCCCEEEEcccCCcccCCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            56789999876 88999999876       3589999999999999999 999999999999999999999999999999


Q ss_pred             CCeEEEEEEEC
Q psy7774         161 ADKVTVLAHSD  171 (173)
Q Consensus       161 g~~v~l~v~r~  171 (173)
                      +..+.|++.|.
T Consensus        84 g~~v~l~v~r~   94 (196)
T 3gsl_A           84 GSIVRLYVMRR   94 (196)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCcEEEEEEec
Confidence            99999999885

>2lob_A Golgi-associated PDZ and coiled-coil motif-contai protein; structural protein-hydrolase complex, peptide binding protei; NMR {Homo sapiens}

Probab=99.34  E-value=2e-16  Score=108.44  Aligned_cols=84  Identities=27%  Similarity=0.419  Sum_probs=75.0

Q ss_pred             CCCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccc-cCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774          87 SGEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYS-AGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK  163 (173)
Q Consensus        87 ~~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~-~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~  163 (173)
                      +..++.|.+.+....+|||.+.++.  ..+++|..|.++|||++ +||++||+|++|||.++.+.++.+++.+++..++.
T Consensus        25 ~~~~~~v~l~k~~~~glG~~l~~g~~~~~gv~V~~V~~~spA~~~aGL~~GD~Il~ING~~v~~~~~~~~~~~l~~~~~~  104 (112)
T 2lob_A           25 FQGIRKVLLLKEDHEGLGISITGGKEHGVPILISEIHPGQPADRCGGLHVGDAILAVNGVNLRDTKHKEAVTILSQQRGE  104 (112)
Confidence            4567889998877789999999875  35799999999999999 89999999999999999999999999999888888


Q ss_pred             EEEEEEE
Q psy7774         164 VTVLAHS  170 (173)
Q Consensus       164 v~l~v~r  170 (173)
                      +.|+|.+
T Consensus       105 v~l~V~~  111 (112)
T 2lob_A          105 IEFEVVY  111 (112)
Confidence            8888865

>1whd_A RGS3, regulator of G-protein signaling 3; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.57  E-value=7.2e-15  Score=98.45  Aligned_cols=83  Identities=23%  Similarity=0.306  Sum_probs=72.8

Q ss_pred             CCCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          87 SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        87 ~~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      +.+.+.+.+.+.. .+|||.+.+.  .+++|..|.++++|+++||+.||+|++|||..+.++++.++..+++..++.+.|
T Consensus        13 ~~~~~~v~l~~~~-~g~G~~~~~~--~~~~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~~v~l   89 (100)
T 1whd_A           13 NGEKLQITIRRGK-DGFGFTICCD--SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIIL   89 (100)
T ss_dssp             CCEEEEEEEECCS-SSSSCBCCCS--SSCBCCBCCTTSHHHHHTCCSSCEEEEETTEECTTCCHHHHHHHHHHCSSEEEE
T ss_pred             ccceEEEEEECCC-CeeeEEEeCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEE
Confidence            3456778888766 7999998764  579999999999999999999999999999999999999999999877788999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      +|.|+.
T Consensus        90 ~v~R~~   95 (100)
T 1whd_A           90 LVWRVS   95 (100)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999874

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=3.6e-15  Score=99.27  Aligned_cols=81  Identities=20%  Similarity=0.244  Sum_probs=72.4

Q ss_pred             CCEEEEEEccCC-CcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRKC-SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~-~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      .+++|.|.+... .+|||.+.+  ..+++|..|.++++|+ +||+.||+|++|||.++.++++.+++..++..++.+.|+
T Consensus         8 ~~~~v~l~~~~~~~~~G~~l~~--~~~~~V~~V~~~spA~-agL~~GD~Il~ing~~v~~~~~~~~~~~~~~~g~~v~l~   84 (96)
T 2edv_A            8 VRHTVKIDKDTLLQDYGFHISE--SLPLTVVAVTAGGSAH-GKLFPGDQILQMNNEPAEDLSWERAVDILREAEDSLSIT   84 (96)
T ss_dssp             EEEEEEECCCSSSCSCSBCCCS--SSSCBCCCBCSSSSST-TTSCTTCBEEEESSCBSTTCCHHHHHHHHHHCSSCEEEE
T ss_pred             ccEEEEEEECCCCCcccEEEec--CCCeEEEEECCCCchh-hCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            468889988763 389999986  5689999999999996 899999999999999999999999999998889999999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      |.|+.
T Consensus        85 v~R~~   89 (96)
T 2edv_A           85 VVRCT   89 (96)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99975

>2yuy_A RHO GTPase activating protein 21; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=2.2e-15  Score=105.09  Aligned_cols=84  Identities=23%  Similarity=0.386  Sum_probs=74.5

Q ss_pred             CCCEEEEEEccCCCcccEEEEcc------------------------------CCCCEEEEEecCCCcccccCCCCCCEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGG------------------------------NAVGIYVHSVQSGSLGYSAGLRTGDRI  137 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg------------------------------~~~~i~V~~v~~gs~A~~~gL~~gD~I  137 (173)
                      ..+|.|+|.|.. .+|||++.+.                              ...+++|..|.+++||+++||+.||+|
T Consensus         7 ~~~r~v~l~r~~-~g~Gf~l~~~t~y~~~~~~~~~~~~~~~G~~~G~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I   85 (126)
T 2yuy_A            7 GGPKTVTLKRTS-QGFGFTLRHFIVYPPESAIQFSYKDEENGNRGGKQRNRLEPMDTIFVKQVKEGGPAFEAGLCTGDRI   85 (126)
T ss_dssp             SSCCCEEEECCS-SSCSCCBCCCCCCCCSSCCCSCSSSCCCCSCCCTTSCCCCCCCCCCBCCCCSSSHHHHHTCCSSCCC
T ss_pred             CCCEEEEEEECC-CCcceeecCccccCCHHHHHHHHHhhcCcceeceeeecccCCCCEEEEEECCCChHHHcCCCCCCEE
Confidence            367889999977 7999999751                              124699999999999999999999999


Q ss_pred             EEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         138 LEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       138 l~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ++|||.++.++++.+++.+++..+..+.|+|.|..
T Consensus        86 ~~ing~~v~~~~~~~~~~~l~~~g~~v~l~v~r~~  120 (126)
T 2yuy_A           86 IKVNGESVIGKTYSQVIALIQNSDTTLELSVMPKD  120 (126)
T ss_dssp             CEETTEECSSCCHHHHHHHHHTCTTEEEEECCCCC
T ss_pred             EEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            99999999999999999999988999999998864

>2kom_A Partitioning defective 3 homolog; PAR-3B, PDZ domain, PSI, structural genomics, alternative splicing, cell cycle, cell division, cell junction; NMR {Homo sapiens}

Probab=99.55  E-value=6.1e-14  Score=97.12  Aligned_cols=83  Identities=25%  Similarity=0.426  Sum_probs=72.2

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC-----CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC--C
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA-----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK--P  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~-----~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~  160 (173)
                      +.+.+.+.+.. .+|||.+.++..     .+++|..|.+++||+++| |++||+|++|||.++.++++.++..+++.  .
T Consensus        30 ~~~~v~l~~~~-~~lG~~l~~~~~~~~g~~gv~V~~V~~gspA~~aG~L~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~  108 (121)
T 2kom_A           30 KRLNIQLKKGT-EGLGFSITSRDVTIGGSAPIYVKNILPRGAAIQDGRLKAGDRLIEVNGVDLVGKSQEEVVSLLRSTKM  108 (121)
T ss_dssp             EEEEEEEECCT-TCCCEEEECCCCSSSSSCCEEEEEECTTSHHHHHTCCCSSSEEEEETTEECTTSCHHHHHHHHHHCCS
T ss_pred             eEEEEEEEcCC-CcEeEEEEeccCCcCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCC
Confidence            45667777755 799999987652     689999999999999999 99999999999999999999999988874  4


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      +..+.|+|.|+.
T Consensus       109 g~~v~l~v~R~g  120 (121)
T 2kom_A          109 EGTVSLLVFRQE  120 (121)
T ss_dssp             SCEEEEEEEECC
T ss_pred             CCEEEEEEEeCC
Confidence            899999999874

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.55  E-value=1.3e-13  Score=91.69  Aligned_cols=81  Identities=20%  Similarity=0.272  Sum_probs=70.1

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v~  165 (173)
                      .+.+.+.+.+.. .+|||.+.+. ..+++|..|.++  |+.+||+.||+|++|||.++.+++|.+++.+++.  .+..+.
T Consensus         9 ~~~~~v~l~~~~-~g~G~~i~~~-~~Gv~V~~v~~~--a~~aGL~~GD~I~~vng~~v~~~~~~~~~~~l~~~~~g~~v~   84 (96)
T 1ujv_A            9 AELMTLTIVKGA-QGFGFTIADS-PTGQRVKQILDI--QGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETS   84 (96)
T ss_dssp             CCCEEEEEECCS-SSSSEEEEEE-TTEEEEEEESCG--GGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEE
T ss_pred             ceEEEEEEEeCC-CceeEEEEcC-CCCEEEEEEecc--cccCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEE
Confidence            467889999876 8999999743 347999999983  6779999999999999999999999999999975  489999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|.|+.
T Consensus        85 l~v~R~g   91 (96)
T 1ujv_A           85 LIIHRGS   91 (96)
T ss_dssp             EEEECCS
T ss_pred             EEEEECC
Confidence            9999874

>1y7n_A Amyloid beta A4 precursor protein-binding family A member 1; copper chaperone for superoxide dismutase, neuronal adaptor, protein transport; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.54  E-value=6.7e-14  Score=92.08  Aligned_cols=79  Identities=23%  Similarity=0.386  Sum_probs=67.6

Q ss_pred             CCEEEEEEccC-CCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRK-CSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~-~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      +.+.+.+.+.. ..+|||.+.+|     +|..|.++|+|+++||+.||+|++|||.++.+.++.++..+++..+..+.|+
T Consensus        11 ~~~~~~i~~~~~~~~lG~~~~~G-----~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~g~~v~l~   85 (90)
T 1y7n_A           11 NVTTVLIRRPDLRYQLGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMK   85 (90)
T ss_dssp             SCEEEEEEESSTTSCCCEEEETT-----EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEE
T ss_pred             CcceEEEEeCCCccccCeEecCC-----EEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            44555555533 57899998754     8999999999999999999999999999999999999999998889999999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      |.+.+
T Consensus        86 v~p~s   90 (90)
T 1y7n_A           86 TMPAA   90 (90)
T ss_dssp             EECCC
T ss_pred             EEECc
Confidence            88653

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=99.54  E-value=4.5e-14  Score=92.46  Aligned_cols=76  Identities=25%  Similarity=0.383  Sum_probs=66.4

Q ss_pred             EEEEc-cCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEE
Q psy7774          93 LMIET-RKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHS  170 (173)
Q Consensus        93 v~l~~-~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r  170 (173)
                      +.+.+ .....|||.+.+    ++||..|.++|+|+++| |+.||+|++|||.++.++++++++.+++..++.+.|++.+
T Consensus         4 v~l~~~~~~~~~G~~~~~----gv~V~~V~~gspA~~aG~L~~GD~Il~ing~~v~~~~~~~~~~~i~~~~~~v~L~v~~   79 (88)
T 3e17_A            4 VLLMKSRANEEYGLRLGS----QIFVKEMTRTGLATKDGNLHEGDIILKINGTVTENMSLTDARKLIEKSRGKLQLVVLR   79 (88)
T ss_dssp             EEEECBTTBCCCCEEEEE----EEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHTTTEEEEEECC
T ss_pred             EEEEeCCCCCCCCEEEeC----CEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEeC
Confidence            45554 335689999875    79999999999999998 9999999999999999999999999999889999999876


Q ss_pred             CC
Q psy7774         171 DT  172 (173)
Q Consensus       171 ~~  172 (173)
                      ..
T Consensus        80 ~~   81 (88)
T 3e17_A           80 DL   81 (88)
T ss_dssp             C-
T ss_pred             CC
Confidence            53

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.54  E-value=6.3e-14  Score=97.77  Aligned_cols=82  Identities=13%  Similarity=0.139  Sum_probs=72.3

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK--PADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v  164 (173)
                      .....+.+.+.. .+|||.+.+. ..+++|..|.+++||+++| |+.||+|++|||..+.+.++.+++.+++.  .|..|
T Consensus        26 ~~~~~~~l~k~~-~glG~~i~~~-~~~v~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~s~~d~~~~l~~~~~G~~v  103 (126)
T 1wif_A           26 NKVIQTKLTVGN-LGLGLVVIQN-GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVL  103 (126)
T ss_dssp             CCEEEEEEECCT-TCCCCCEEEE-TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEE
T ss_pred             CceEEEEEecCC-ceEeEEEEcC-CCcEEEEEECCCCHHHHcCCCCCCCEEEEECCEEcCCCCHHHHHHHHhcCCCCCEE
Confidence            356778888766 8999998763 4579999999999999999 99999999999999999999999999975  68999


Q ss_pred             EEEEEEC
Q psy7774         165 TVLAHSD  171 (173)
Q Consensus       165 ~l~v~r~  171 (173)
                      .|+|.|+
T Consensus       104 ~l~V~R~  110 (126)
T 1wif_A          104 QIKAYRG  110 (126)
T ss_dssp             EEEEESS
T ss_pred             EEEEEEC
Confidence            9999885

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.54  E-value=2e-13  Score=101.74  Aligned_cols=119  Identities=19%  Similarity=0.367  Sum_probs=94.8

Q ss_pred             CcccHHHHHHHHhhC--CCeEEEEEEeCCCccCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCccccC
Q psy7774           2 RSATYQLAASVLRQC--GNSITMLVQYSPDKYHELEGSGSSSAENESVSGRGSGSPTPCNSPGTNRKSSIQHNTSTLTRT   79 (173)
Q Consensus         2 ~~~th~~av~~L~~~--g~~v~L~V~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~   79 (173)
                      .+++|+++..+|+..  ++.|.|.|.|+.....                       .|    .                 
T Consensus        70 ~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~-----------------------~~----~-----------------  105 (196)
T 1p1d_A           70 EDSTFEEANQLLRDSSITSKVTLEIEFDVAESV-----------------------IP----S-----------------  105 (196)
T ss_dssp             TTSCHHHHHHHHHTCCSSSEEEEEEEECSCSCC-----------------------BC----C-----------------
T ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEecCCCCC-----------------------CC----C-----------------
Confidence            356899999999997  8899999998644210                       00    0                 


Q ss_pred             CCCCCCCCCCCEEEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHH
Q psy7774          80 HVCKDERSGEPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA  154 (173)
Q Consensus        80 ~~~~~~~~~~~~~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~  154 (173)
                              .....+.+.+.....|||.+....    ..+++|..|.++++|+++| |+.||+|++|||..+.++++.++.
T Consensus       106 --------~~~~~v~l~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~s~A~~aG~l~~GD~I~~vng~~v~~~~~~~~~  177 (196)
T 1p1d_A          106 --------SGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAV  177 (196)
T ss_dssp             --------SSCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHH
T ss_pred             --------CCcEEEEecCCCCCCcCEEEECCCCCCCCCCEEEEEECCCCcHHhcCCCCCCCEEEEECCEECCCCCHHHHH
Confidence                    022455565444467999998753    3589999999999999999 999999999999999999999999


Q ss_pred             HHHhCCCCeEEEEEEECC
Q psy7774         155 YELAKPADKVTVLAHSDT  172 (173)
Q Consensus       155 ~~l~~~g~~v~l~v~r~~  172 (173)
                      .+++..+..+.|+|.|+.
T Consensus       178 ~~l~~~~~~v~l~v~R~~  195 (196)
T 1p1d_A          178 QILQQCEDLVKLKIRKDE  195 (196)
T ss_dssp             HHHHHCTTCEEEEEECCC
T ss_pred             HHHHhCCCEEEEEEEeCC
Confidence            999866999999999875

>2qt5_A Glutamate receptor-interacting protein 1; PDZ-peptide complex, PDZ tandem, alternative splicing, cell junction, cytoplasm; 2.30A {Rattus norvegicus}

Probab=99.54  E-value=4.7e-14  Score=105.45  Aligned_cols=84  Identities=19%  Similarity=0.293  Sum_probs=76.4

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~-gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      ..++.|.|.+..+.+|||++.++.  ..+++|..|.++++|+++ ||+.||+|++|||..+.+++|.++..+++..+..+
T Consensus         6 ~~~~~v~l~~~~~~~lG~~i~~~~~~~~~~~V~~v~~~spA~~aggl~~GD~I~~vng~~v~~~~~~~~~~~~~~~g~~v   85 (200)
T 2qt5_A            6 KGSTVVELMKKEGTTLGLTVSGGIDKDGKPRVSNLRQGGIAARSDQLDVGDYIKAVNGINLAKFRHDEIISLLKNVGERV   85 (200)
T ss_dssp             EEEEEEEEECCTTCCCCEEEECCTTSSSCSEEEEECTTSHHHHTTSCCTTCEEEEETTEECTTSCHHHHHHHHHTCCSEE
T ss_pred             CCCEEEEEEeCCCCCCCEEEecccCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeE
Confidence            357889998877799999999875  457999999999999998 99999999999999999999999999998899999


Q ss_pred             EEEEEEC
Q psy7774         165 TVLAHSD  171 (173)
Q Consensus       165 ~l~v~r~  171 (173)
                      .|++.|+
T Consensus        86 ~l~v~R~   92 (200)
T 2qt5_A           86 VLEVEYE   92 (200)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecc
Confidence            9999885

>1v6b_A Harmonin isoform A1; structural genomics, usher syndrome, USH1, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.54  E-value=2.6e-14  Score=98.58  Aligned_cols=81  Identities=27%  Similarity=0.372  Sum_probs=69.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccCC---CCEEEEEecCCCccccc-CCCCCCEEEEECCEecCCCCHHHHHHHHhCC----
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNA---VGIYVHSVQSGSLGYSA-GLRTGDRILEYNGTDLRAATAEEAAYELAKP----  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~---~~i~V~~v~~gs~A~~~-gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~----  160 (173)
                      ..+.+.+.+.  .+|||++.|+.+   ..++|..|.+++||+++ ||+.||+|++|||.++.+++|.+++.+++..    
T Consensus        18 ~~~~~~~~~~--~glG~~i~gg~~~~~~~i~I~~V~~gspA~~aggL~~GD~Il~Ing~~v~~~~~~~~~~~l~~~~~~~   95 (118)
T 1v6b_A           18 DVRLLRIKKE--GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQG   95 (118)
T ss_dssp             CEEEEEEESC--SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHT
T ss_pred             eEEEEEECCC--CccCEEEEcccCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHHhhhcC
Confidence            3455666654  489999998763   35999999999999998 8999999999999999999999999888643    


Q ss_pred             CCeEEEEEEEC
Q psy7774         161 ADKVTVLAHSD  171 (173)
Q Consensus       161 g~~v~l~v~r~  171 (173)
                      +..+.|+|.|.
T Consensus        96 g~~v~l~v~r~  106 (118)
T 1v6b_A           96 GDWIDLVVAVC  106 (118)
T ss_dssp             CSEEEEEEECC
T ss_pred             CCeEEEEEEeC
Confidence            88999999985

>2vz5_A TAX1-binding protein 3; WNT signaling pathway, protein binding, nucleus, cytoplasm, PDZ domain; 1.74A {Homo sapiens} PDB: 3dj1_A 3diw_A 2l4s_A 2l4t_A 3gj9_A 2kg2_A 3dj3_A

Probab=99.54  E-value=6.1e-14  Score=99.46  Aligned_cols=84  Identities=32%  Similarity=0.459  Sum_probs=72.4

Q ss_pred             CCEEEEEEccC---CCcccEEEEccC--------------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHH
Q psy7774          89 EPRFLMIETRK---CSNLGISLVGGN--------------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAE  151 (173)
Q Consensus        89 ~~~~v~l~~~~---~~~lG~~l~gg~--------------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~  151 (173)
                      ..+.|.|.+..   ..+|||++.+|.              ..+++|..|.+++||+++||+.||+|++|||..+.++++.
T Consensus        23 ~~~~v~l~~~~~~~~~~lG~~i~~g~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~  102 (139)
T 2vz5_A           23 MVQRVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHD  102 (139)
T ss_dssp             EEEEEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHH
T ss_pred             ceEEEEEEEcCCCCcccccEEEEccccCChhhhhhcccCCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEEcCCCCHH
Confidence            56778887743   137999998754              2689999999999999999999999999999999999999


Q ss_pred             HHHHHHhC-CCCeEEEEEEECC
Q psy7774         152 EAAYELAK-PADKVTVLAHSDT  172 (173)
Q Consensus       152 ~~~~~l~~-~g~~v~l~v~r~~  172 (173)
                      ++..+++. .|..+.|+|.|+.
T Consensus       103 ~~~~~l~~~~g~~v~l~v~R~g  124 (139)
T 2vz5_A          103 QARKRLTKRSEEVVRLLVTRQS  124 (139)
T ss_dssp             HHHHHHCCTTCSEEEEEEEECC
T ss_pred             HHHHHHHhCCCCEEEEEEEECC
Confidence            99999975 6789999999874

>3r0h_A INAD, inactivation-NO-after-potential D protein; protein-protein complex, PDZ domain, peptide binding protein; 2.60A {Drosophila melanogaster}

Probab=99.53  E-value=1.3e-13  Score=103.33  Aligned_cols=84  Identities=19%  Similarity=0.274  Sum_probs=75.0

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCC----CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCC--CCHHHHHHHHhCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNA----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRA--ATAEEAAYELAKP  160 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~----~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~--~~~~~~~~~l~~~  160 (173)
                      .+...+.+.+.. .+|||++.+|.+    .+++|..|.++++|+++| |+.||+|++|||..+.+  +++.+++..++..
T Consensus        17 ~~~~~v~~~~~~-~~lG~~i~~g~~~~~~~g~~V~~V~~~spA~~aG~L~~GD~Il~vng~~v~~~~~~~~~~~~~~~~~   95 (206)
T 3r0h_A           17 NKKILIELKVEK-KPMGVIVCGGKNNHVTTGCVITHVYPEGQVAADKRLKIFDHICDINGTPIHVGSMTTLKVHQLFHTT   95 (206)
T ss_dssp             TSCEEEEEECTT-SCCCEEEECCSSSSCCSCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECCGGGSCHHHHHHHHHSC
T ss_pred             CCEEEEEEEeCC-CCcCEEEecccCCCCCCCeEEEEECCCChHHhcCCCCCCCEEEEECCEEcCCCccCHHHHHHHHHhc
Confidence            467889999865 899999998763    489999999999999987 99999999999999999  9999999999988


Q ss_pred             CCe-EEEEEEECC
Q psy7774         161 ADK-VTVLAHSDT  172 (173)
Q Consensus       161 g~~-v~l~v~r~~  172 (173)
                      ++. +.|+|.|+.
T Consensus        96 ~~~~v~l~v~R~~  108 (206)
T 3r0h_A           96 YEKAVTLTVFRAD  108 (206)
T ss_dssp             CSSEEEEEEECCS
T ss_pred             CCCceEEEEEecc
Confidence            877 999998863

>1uez_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.53  E-value=3.2e-14  Score=95.29  Aligned_cols=84  Identities=38%  Similarity=0.559  Sum_probs=70.8

Q ss_pred             CCCEEEEEEcc-CCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          88 GEPRFLMIETR-KCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~-~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      .+++.+.+.+. ...+|||.+.++.  ..+++|..|.++++|+++||+.||+|++|||..+.++++.+++..++ .+..+
T Consensus         7 ~~~~~v~l~~~~~~~~lG~~~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~~~-~~~~v   85 (101)
T 1uez_A            7 GEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALK-GSKKL   85 (101)
T ss_dssp             CCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSS-SSSSC
T ss_pred             CccEEEEEEECCCCCcccEEEeCCCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHhhc-CCCeE
Confidence            36788888873 3579999998875  46899999999999999999999999999999999999977765554 45688


Q ss_pred             EEEEEECC
Q psy7774         165 TVLAHSDT  172 (173)
Q Consensus       165 ~l~v~r~~  172 (173)
                      .|+|.|+.
T Consensus        86 ~l~v~R~g   93 (101)
T 1uez_A           86 VLSVYSAG   93 (101)
T ss_dssp             CEEECCCC
T ss_pred             EEEEEECC
Confidence            89998763

>1x5n_A Harmonin; PDZ domain, usher syndrome 1C protein, autoimmune enteropathy-related antigen AIE-75 ,antigen NY-CO-38/NY-CO- 37, PDZ-73 protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 2kbs_A

Probab=99.53  E-value=9.9e-14  Score=94.87  Aligned_cols=83  Identities=29%  Similarity=0.458  Sum_probs=72.0

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      ..++.+.+.+....+|||.+.++.  ..+++|..|.++++|+++||+.||+|++|||..+.++.+.+++..++.. ..+.
T Consensus        14 ~~~~~v~~~~~~~~~lG~~l~~~~~~~~gv~V~~V~~~s~A~~aGL~~GD~Il~vng~~v~~~~~~~~~~~~~~~-~~v~   92 (114)
T 1x5n_A           14 NKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSS-RSLT   92 (114)
T ss_dssp             CSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHC-SSEE
T ss_pred             CCcEEEEEEEcCCCceeEEEeecCCCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CeEE
Confidence            356888887767789999999765  4689999999999999999999999999999999999988888777654 6889


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      |+|.|+
T Consensus        93 l~v~r~   98 (114)
T 1x5n_A           93 ISIVAA   98 (114)
T ss_dssp             EEECSS
T ss_pred             EEEEcC
Confidence            998876

>3sfj_A TAX1-binding protein 3; PDZ:peptide complex, signaling protein-inhibitor complex; 1.24A {Homo sapiens} PDB: 3dj3_A

Probab=99.53  E-value=1.2e-13  Score=92.78  Aligned_cols=80  Identities=34%  Similarity=0.485  Sum_probs=67.1

Q ss_pred             EEEEEccC---CCcccEEEEccC--------------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHH
Q psy7774          92 FLMIETRK---CSNLGISLVGGN--------------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAA  154 (173)
Q Consensus        92 ~v~l~~~~---~~~lG~~l~gg~--------------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~  154 (173)
                      .+.+.+..   ..+|||++.|+.              ..+++|..|.++|||+++||+.||+|++|||..+.++++.+++
T Consensus         7 ~i~~~~~~~~~~~~lG~~i~g~~~~~~~~~~~~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~   86 (104)
T 3sfj_A            7 RVEIHKLRQGENLILGFSIGGGIDQDPSQNPFSEDKTDKGIYVTRVSEGGPAEIAGLQIGDKIMQVNGWDMTMVTHDQAR   86 (104)
T ss_dssp             EEEEECEEETTEEECSEEEEECTTSCGGGCSSCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             EEEEEEccCCCCCcccEEEECccccCccccccccCCCCCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHH
Confidence            45555432   237999999654              3479999999999999999999999999999999999999999


Q ss_pred             HHHhC-CCCeEEEEEEEC
Q psy7774         155 YELAK-PADKVTVLAHSD  171 (173)
Q Consensus       155 ~~l~~-~g~~v~l~v~r~  171 (173)
                      ..++. .+..+.|++.|.
T Consensus        87 ~~l~~~~g~~v~l~v~R~  104 (104)
T 3sfj_A           87 KRLTKRSEEVVRLLVTRQ  104 (104)
T ss_dssp             HHHTCTTCSEEEEEEEEC
T ss_pred             HHHHhCCCCEEEEEEEcC
Confidence            99974 678999999884

>1qau_A Neuronal nitric oxide synthase (residues 1-130); beta-finger, oxidoreductase; 1.25A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1qav_B

Probab=99.52  E-value=2e-13  Score=92.99  Aligned_cols=82  Identities=21%  Similarity=0.221  Sum_probs=72.7

Q ss_pred             EEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCC-CCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEE
Q psy7774          91 RFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGL-RTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVL  167 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL-~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~  167 (173)
                      .+|.|.++...+|||.+.+.. ..+++|..|.+++||+++|| +.||+|++|||..+.++++.++..+++ ..+..+.|+
T Consensus         3 ~~v~l~~~~~~glG~~~~~~~~~~~~~V~~v~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~l~   82 (112)
T 1qau_A            3 ISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHVVL   82 (112)
T ss_dssp             EEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEEEE
T ss_pred             EEEEEEcCCCCceeEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCcEEEE
Confidence            568888877789999998765 46899999999999999997 999999999999999999999998886 467899999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      +.|+.
T Consensus        83 v~R~g   87 (112)
T 1qau_A           83 ILRGP   87 (112)
T ss_dssp             EEECC
T ss_pred             EEeCC
Confidence            99874

>3kzd_A TIAM-1, T-lymphoma invasion and metastasis-inducing prote; PDZ, cell junction, cell adhesion, signaling protein, nucleotide exchange factor; 1.30A {Homo sapiens} PDB: 3kze_A

Probab=99.51  E-value=1.6e-13  Score=90.86  Aligned_cols=82  Identities=26%  Similarity=0.322  Sum_probs=67.9

Q ss_pred             CCEEEEEEccCC--CcccEEEEccC---CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774          89 EPRFLMIETRKC--SNLGISLVGGN---AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK  163 (173)
Q Consensus        89 ~~~~v~l~~~~~--~~lG~~l~gg~---~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~  163 (173)
                      ..+.+.|.|.+.  .+|||++....   ..+++|..|.+++||+++||+.||+|++|||.++.++++.++..+++  ...
T Consensus         6 ~~~~v~i~k~~~~~~~~Gf~v~~~~~~~~~g~~V~~V~~~spA~~aGL~~GD~Il~vng~~v~~~~~~~l~~~l~--~~~   83 (94)
T 3kzd_A            6 VTHSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLS--QPS   83 (94)
T ss_dssp             EEEEEEEEC------CCSEEEEEECSSSSCEEEEEEECTTSHHHHTTCCTTCEEEEETTEEGGGCCHHHHHHHHH--SSE
T ss_pred             ceeEEEEEeCCCCcCCcCEEEEecCCCCcCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHh--CCe
Confidence            568899998763  48999998744   34899999999999999999999999999999999999999988887  457


Q ss_pred             EEEEEEECC
Q psy7774         164 VTVLAHSDT  172 (173)
Q Consensus       164 v~l~v~r~~  172 (173)
                      +.|+|+..+
T Consensus        84 l~ltV~~~p   92 (94)
T 3kzd_A           84 LGLLVRTYP   92 (94)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEecC
Confidence            888887654

>2kjd_A Sodium/hydrogen exchange regulatory cofactor NHE- RF1; PDZ domain, protein, acetylation, cell projection, disease mutation, membrane; NMR {Homo sapiens}

Probab=99.50  E-value=2.2e-13  Score=94.92  Aligned_cols=83  Identities=22%  Similarity=0.370  Sum_probs=72.7

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCC-CCeEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP-ADKVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~-g~~v~  165 (173)
                      ..++.+.+.+.. .+|||.+.++. ..+++|..|.++++|+++||+.||+|++|||..+.++++.++..+++.. +..+.
T Consensus         8 ~~~r~v~l~~~~-~g~G~~l~~~~~~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~~~~   86 (128)
T 2kjd_A            8 LRPRLCTMKKGP-SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL   86 (128)
T ss_dssp             CCCEEEEEECCS-SSCCEEEEECSSSCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTTCSEEEE
T ss_pred             CCcEEEEEecCC-CcccEEEEecCCCCCEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCEEE
Confidence            368999999987 79999998766 4589999999999999999999999999999999999999999998765 55667


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      |++.|+
T Consensus        87 l~v~R~   92 (128)
T 2kjd_A           87 LVVDRE   92 (128)
T ss_dssp             EEECHH
T ss_pred             EEEEeC
Confidence            888764

>3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens}

Probab=99.50  E-value=7.7e-14  Score=116.48  Aligned_cols=80  Identities=34%  Similarity=0.536  Sum_probs=74.4

Q ss_pred             CEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeEEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVTVL  167 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v~l~  167 (173)
                      ++.|.+.+.  .+|||.+.||+..|+||..|.+||||+++||+.||+|++|||.++.++++++++.+++.  +|+.|.|+
T Consensus         2 ~r~V~l~k~--~~lG~~i~gg~~~Gi~V~~V~~gspA~~aGL~~GD~Il~VNG~~v~~~t~~e~~~~L~~~~~g~~v~L~   79 (468)
T 3shw_A            2 MKLVKFRKG--DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTIL   79 (468)
T ss_dssp             EEEEEEECC--SSCCEEEEEETTTEEEEEEECSSSHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEEE
T ss_pred             ceEEEEecC--CccceEEEccCcCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCCCEEEEE
Confidence            477888884  79999999998889999999999999999999999999999999999999999999976  89999999


Q ss_pred             EEEC
Q psy7774         168 AHSD  171 (173)
Q Consensus       168 v~r~  171 (173)
                      |+|+
T Consensus        80 V~r~   83 (468)
T 3shw_A           80 AQKK   83 (468)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9986

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=99.49  E-value=1.8e-13  Score=101.70  Aligned_cols=69  Identities=28%  Similarity=0.385  Sum_probs=64.7

Q ss_pred             CcccEEEEccC----------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEE
Q psy7774         101 SNLGISLVGGN----------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHS  170 (173)
Q Consensus       101 ~~lG~~l~gg~----------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r  170 (173)
                      .+|||+|.||.          ..+++|..|.++++|++ ||+.||+|++|||.++.++++.+++..++..+..+.|+|.|
T Consensus         2 ~g~Gf~i~gg~~~~~~~~~~~~~g~~V~~v~~~spA~~-gl~~GD~I~~vng~~v~~~~~~~~~~~~~~~~~~v~l~v~r   80 (195)
T 2qbw_A            2 PELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASK-LLQPGDKIIQANGYSFINIEHGQAVSLLKTFQNTVELIIVR   80 (195)
T ss_dssp             CCSSEEEEECTTSCCCSSCTTCCSEEEEEECTTSTTTT-TCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CcccEEEECCcCCCCCccccCCCCEEEEEECCCChHHh-CCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            68999999974          35899999999999999 99999999999999999999999999999888899999998

>2d8i_A T-cell lymphoma invasion and metastasis 1 variant; PDZ domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=9.8e-14  Score=95.22  Aligned_cols=82  Identities=26%  Similarity=0.338  Sum_probs=70.7

Q ss_pred             CCEEEEEEccCCC--cccEEEEccCC---CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774          89 EPRFLMIETRKCS--NLGISLVGGNA---VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADK  163 (173)
Q Consensus        89 ~~~~v~l~~~~~~--~lG~~l~gg~~---~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~  163 (173)
                      .++.+.|.|....  +|||++.+...   .+++|..|.++++|+++||+.||+|++|||.++.++++.++..+++.  ..
T Consensus        15 ~~~~v~l~k~~~~~~~~G~~v~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~Il~Ing~~v~~~~~~~~~~~l~~--~~   92 (114)
T 2d8i_A           15 VTQSIHIEKSDTAADTYGFSLSSVEEDGIRRLYVNSVKETGLASKKGLKAGDEILEINNRAADALNSSMLKDFLSQ--PS   92 (114)
T ss_dssp             EEEEEEEECSCTTTCCCCCEEEEEEETTEEEEEEEECCTTSSHHHHTCCTTCCEEEESSCBGGGCCHHHHHHHHTS--SE
T ss_pred             ceEEEEEEeCCCCccccCEEEEecCcCCcCCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHhC--Cc
Confidence            5788999987743  79999986442   47999999999999999999999999999999999999899888874  48


Q ss_pred             EEEEEEECC
Q psy7774         164 VTVLAHSDT  172 (173)
Q Consensus       164 v~l~v~r~~  172 (173)
                      +.|+|+|.+
T Consensus        93 v~l~v~R~p  101 (114)
T 2d8i_A           93 LGLLVRTYP  101 (114)
T ss_dssp             EEEEEEECC
T ss_pred             EEEEEEECC
Confidence            999999864

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.48  E-value=4e-14  Score=95.26  Aligned_cols=81  Identities=19%  Similarity=0.269  Sum_probs=70.2

Q ss_pred             CEEEEEEccCCCcccEEEEccCC--CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~~--~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      .+.+.+. .. .+|||.+.++.+  .+++|..|.+++||+++||+.||+|++|||..+.++++.++..+++..+..+.|+
T Consensus         6 ~~~v~~~-~~-~~lG~~l~~g~~~~~~~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~~~~~~~~~l~~~g~~v~l~   83 (103)
T 1v5l_A            6 SGNVVLP-GP-APWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLK   83 (103)
T ss_dssp             CBCCEEE-SS-SCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECE
T ss_pred             EEEEEEc-CC-CCcCEEEeccccCCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEE
Confidence            4445554 33 699999988763  4799999999999999999999999999999999999999999998779999999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      |.|+.
T Consensus        84 v~R~g   88 (103)
T 1v5l_A           84 IDRAE   88 (103)
T ss_dssp             ECCCT
T ss_pred             EEECC
Confidence            98864

>1b8q_A Protein (neuronal nitric oxide synthase); PDZ domain, NNOS, nitric oxide synthase, oxidoreductase; NMR {Rattus norvegicus} SCOP: b.36.1.1

Probab=99.48  E-value=1.8e-13  Score=95.29  Aligned_cols=84  Identities=20%  Similarity=0.216  Sum_probs=74.9

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCC-CCCCEEEEECCEecCCCCHHHHHHHHhC-CCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGL-RTGDRILEYNGTDLRAATAEEAAYELAK-PADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL-~~gD~Il~Vng~~~~~~~~~~~~~~l~~-~g~~v~  165 (173)
                      +++.|.+.++...+|||.+.+.. ..+++|..|.++++|+++|| +.||+|++|||..+.++++.++..+++. .+..+.
T Consensus         8 ~~~~v~l~~~~~~glG~~~~~~~~~~~~~V~~V~~~spA~~aGll~~GD~I~~ing~~v~~~~~~~~~~~l~~~~g~~v~   87 (127)
T 1b8q_A            8 NVISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV   87 (127)
T ss_dssp             CSEEEEEECTTTSCCSCCEEECTTSSCEEECCCSSSSSHHHHSSCCTTTCCCEETTEECSSSCHHHHHHHHHSCCSSCEE
T ss_pred             ceEEEEEEeCCCCcEeEEEEecCCCCCEEEEEeCCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCeEE
Confidence            57889999887789999998765 35899999999999999998 9999999999999999999999998874 578999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |++.|+.
T Consensus        88 l~v~R~g   94 (127)
T 1b8q_A           88 VLILRGP   94 (127)
T ss_dssp             EEEECCC
T ss_pred             EEEEeCC
Confidence            9998864

>1p1d_A PDZ45, glutamate receptor interacting protein; PDZ domain, tandem repeats, scaffold protein, protein binding; NMR {Rattus norvegicus} SCOP: b.36.1.1 b.36.1.1 PDB: 1p1e_A 1x5r_A

Probab=99.48  E-value=2.1e-13  Score=101.64  Aligned_cols=84  Identities=26%  Similarity=0.358  Sum_probs=75.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccC------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC-
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP-  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~-  160 (173)
                      +.++|.|.+....+|||.+.++.      ..+++|..|.+++||+++| |+.||+|++|||..+.++++.++..+++.. 
T Consensus         6 ~~~~v~l~~~~~~glG~~i~~~~~~~~~~~~~~~V~~v~~~spA~~aG~l~~GD~I~~vng~~v~~~~~~~~~~~l~~~~   85 (196)
T 1p1d_A            6 ETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDSS   85 (196)
T ss_dssp             EEEEEEEECBTTTBCCCEEEECSSCSSSCSCSEEEEECCTTSHHHHTSCCCSSCCEEEETTBCSTTSCHHHHHHHHHTCC
T ss_pred             EEEEEEEEeCCCCccCEEEeCCcCCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCC
Confidence            56889999987799999999873      3579999999999999999 999999999999999999999999888765 


Q ss_pred             -CCeEEEEEEECC
Q psy7774         161 -ADKVTVLAHSDT  172 (173)
Q Consensus       161 -g~~v~l~v~r~~  172 (173)
                       +..+.|++.|+.
T Consensus        86 ~g~~v~l~v~R~~   98 (196)
T 1p1d_A           86 ITSKVTLEIEFDV   98 (196)
T ss_dssp             SSSEEEEEEEECS
T ss_pred             CCCeEEEEEEecC
Confidence             889999998864

>1uf1_A KIAA1526 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.47  E-value=6.4e-13  Score=92.69  Aligned_cols=83  Identities=27%  Similarity=0.457  Sum_probs=70.8

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      +++++.+......+|||.+.++.  ..+++|..|.++++|+++||+.||+|++|||..+.++++.+++..++. +..+.|
T Consensus        20 ~~~~v~v~~~~~~~lG~~~~~~~~~~~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~~~~~~~~~~~~~-~~~v~l   98 (128)
T 1uf1_A           20 DEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKS-SRHLIL   98 (128)
T ss_dssp             SEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTT-CSEEEE
T ss_pred             cEEEEEEEECCCCccCEEEECcccCCCCEEEEEECCCCHHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHhc-CCeEEE
Confidence            56778887655578999998865  358999999999999999999999999999999999999878777665 579999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      +|.|+.
T Consensus        99 ~v~R~g  104 (128)
T 1uf1_A           99 TVKDVG  104 (128)
T ss_dssp             EEECCS
T ss_pred             EEEECC
Confidence            999864

>3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A

Probab=99.46  E-value=3.2e-13  Score=110.76  Aligned_cols=81  Identities=33%  Similarity=0.525  Sum_probs=74.0

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTV  166 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l  166 (173)
                      .++.|.+.+.  .+|||++.+|...|++|..|.+||||+++||+.||+|++|||.++.++++++++..++  ..|..+.|
T Consensus         9 ~~~~v~~~k~--~~lG~~i~gg~~~gi~V~~V~~gspA~~aGL~~GD~Il~VnG~~v~~~~~~e~~~~l~~~~~g~~v~l   86 (391)
T 3tsz_A            9 SMKLVKFRKG--DSVGLRLAGGNDVGIFVAGVLEDSPAAKEGLEEGDQILRVNNVDFTNIIREEAVLFLLDLPKGEEVTI   86 (391)
T ss_dssp             CEEEEEEECC--SSCCEEEEEETTTEEEEEEECTTCHHHHTTCCTTEEEEEETTEECTTCCHHHHHHHHHHSCTTSEEEE
T ss_pred             CcEEEEeecC--CceeEEEEecCCCCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhhcCCCeEEE
Confidence            4567777775  4799999998889999999999999999999999999999999999999999999998  58999999


Q ss_pred             EEEEC
Q psy7774         167 LAHSD  171 (173)
Q Consensus       167 ~v~r~  171 (173)
                      ++.|+
T Consensus        87 ~v~r~   91 (391)
T 3tsz_A           87 LAQKK   91 (391)
T ss_dssp             EEEEC
T ss_pred             EEeeC
Confidence            99986

>1vae_A Rhophilin 2, rhophilin, RHO GTPase binding protein 2; PDZ domain, intracellular signaling cascade, signal transduction; NMR {Mus musculus} SCOP: b.36.1.1

Probab=99.46  E-value=3.5e-14  Score=97.00  Aligned_cols=82  Identities=24%  Similarity=0.298  Sum_probs=70.5

Q ss_pred             CCCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCC-CCeEE
Q psy7774          87 SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP-ADKVT  165 (173)
Q Consensus        87 ~~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~-g~~v~  165 (173)
                      +..+|.|.|.+.. .+|||.+.+.  .+++|..|.++++|+++||+.||+|++|||..+.++++.++..+++.. +..+.
T Consensus        13 ~~~~r~v~l~~~~-~~~G~~l~~~--~~v~V~~V~~~spA~~aGL~~GD~Il~InG~~v~~~~~~d~~~~i~~~~~~~v~   89 (111)
T 1vae_A           13 WSPPRGIHFTVEE-GDLGFTLRGN--TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVE   89 (111)
T ss_dssp             ECCCCCCCEECCS-SCCSCCEESS--SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEEC
T ss_pred             CCCCeEEEEEcCC-CcccEEEeCC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCceEE
Confidence            3467888999865 8999999764  478999999999999999999999999999999999999999888754 45689


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      |+|.|.
T Consensus        90 l~V~~~   95 (111)
T 1vae_A           90 MKVVSL   95 (111)
T ss_dssp             EEEECE
T ss_pred             EEEEec
Confidence            988764

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=99.44  E-value=1.7e-12  Score=85.20  Aligned_cols=79  Identities=22%  Similarity=0.392  Sum_probs=66.8

Q ss_pred             CEEEEEEccC-CCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          90 PRFLMIETRK-CSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        90 ~~~v~l~~~~-~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      +..+.+.+.. ...|||.+.    .+++|..|.++++|+++| |+.||+|++|||..+.++++.++..+++..++.+.|+
T Consensus         3 ~~~v~~~~~~~~~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~   78 (92)
T 3cyy_A            3 PTKVTLVKSAKNEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMV   78 (92)
T ss_dssp             CEEEEEECSSTTSCCCEEEE----EEEEEEEECTTCHHHHSCCCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTEEEEE
T ss_pred             cEEEEEEeCCCCCCCCEEEe----CCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCcEEEE
Confidence            4566665533 468999876    479999999999999999 9999999999999999999999999998877899999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      +.|+.
T Consensus        79 v~r~g   83 (92)
T 3cyy_A           79 VQRDE   83 (92)
T ss_dssp             EEC--
T ss_pred             EEeCC
Confidence            98863

>2eaq_A LIM domain only protein 7; conserved hypothetical protein, structural genomics, NPPSFA; 1.46A {Homo sapiens}

Probab=99.43  E-value=9.3e-13  Score=86.19  Aligned_cols=81  Identities=20%  Similarity=0.254  Sum_probs=67.2

Q ss_pred             EEEEEEccCCC--cccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEE
Q psy7774          91 RFLMIETRKCS--NLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTV  166 (173)
Q Consensus        91 ~~v~l~~~~~~--~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l  166 (173)
                      +.+.+.+.++.  .|||.+... ..+++|..|.+++||+++||+.||+|++|||..+.+.++.++..+++  ..+..+.|
T Consensus         5 ~~~~~~~~~~~~~~lG~~~~~~-~~g~~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~g~~v~l   83 (90)
T 2eaq_A            5 MRISINQTPGKSLDFGFTIKWD-IPGIFVASVEAGSPAEFSQLQVDDEIIAINNTKFSYNDSKEWEEAMAKAQETGHLVM   83 (90)
T ss_dssp             EEEEEECCTTCSSCCSEEEEEE-TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECCTTCHHHHHHHHHHHHHHTEEEE
T ss_pred             eEEEEEecCCCCCcccEEEEec-CCCEEEEEECCCChHHHcCCCCCCEEEEECCEEccCCCHHHHHHHHHhcCCCCEEEE
Confidence            44566655433  799998743 45899999999999999999999999999999998788888888886  36899999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      +|.|+.
T Consensus        84 ~v~R~g   89 (90)
T 2eaq_A           84 DVRRYG   89 (90)
T ss_dssp             EEEEEC
T ss_pred             EEEeCC
Confidence            999864

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=99.40  E-value=3.2e-12  Score=81.66  Aligned_cols=73  Identities=25%  Similarity=0.461  Sum_probs=63.0

Q ss_pred             EEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774          95 IETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD  171 (173)
Q Consensus        95 l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~  171 (173)
                      +.......|||.+.    .+++|..|.++++|+++| |+.||+|++|||.++.++++.++..+++..++.+.|++.|+
T Consensus         7 ~~~~~~~~~g~~~~----~gv~V~~v~~~s~A~~aG~l~~GD~I~~ing~~v~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A            7 VKSRKNEEYGLRLA----SHIFVKEISQDSLAARDGNIQEGDVVLKINGTVTENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             ECCSTTCCCCEEEE----EEEEEEEECTTSHHHHHSSCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             EECCCCCCCCEEEe----CCEEEEEECCCChHHHCCCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            33444578999876    469999999999999999 99999999999999999999999999987777999999875

>2krg_A Na(+)/H(+) exchange regulatory cofactor NHE-RF1; acetylation, cell projection, disease mutation, membrane, phosphoprotein, polymorphism; NMR {Homo sapiens}

Probab=99.40  E-value=2.1e-13  Score=103.42  Aligned_cols=83  Identities=23%  Similarity=0.392  Sum_probs=73.1

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE-E
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKV-T  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v-~  165 (173)
                      ..++.|.|.+.. .+|||.+.++. ..+++|..|.+|++|+++||+.||+|++|||..+.++++.+++.+++..+..+ .
T Consensus         8 ~~~r~v~l~k~~-~glG~~l~~~~~~~gv~V~~V~~gSpA~~aGL~~GD~Il~VNG~~V~~~s~~dl~~~l~~~g~~v~~   86 (216)
T 2krg_A            8 LRPRLCTMKKGP-SGYGFNLHSDKSKPGQFIRSVDPDSPAEASGLRAQDRIVEVNGVCMEGKQHGDVVSAIRAGGDETKL   86 (216)
T ss_dssp             CCCEEEEEECCS-SSSCEEECCCSSSCSCBEEEECTTSHHHHHTCCTTCBCCEETTEECTTCCTHHHHHHHHHHCSEEEE
T ss_pred             cceEEEEEEeCC-CCceEEEEecCCCCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhcCCeEEE
Confidence            468999999877 79999998766 45899999999999999999999999999999999999999998887668888 7


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      |+|.|.
T Consensus        87 l~V~R~   92 (216)
T 2krg_A           87 LVVDRE   92 (216)
T ss_dssp             EECCHH
T ss_pred             EEEEEC
Confidence            777653

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.40  E-value=4.2e-12  Score=92.25  Aligned_cols=82  Identities=27%  Similarity=0.414  Sum_probs=70.7

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~  167 (173)
                      +++.|.|.+....+|||.+... ..+++|..|.+++||+++||+.||+|++|||..+.+++++....+++ ..+..+.|+
T Consensus         4 ~~r~v~l~k~~~~~lG~~~~~~-~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~~~~~~~~~~~~~~~~v~l~   82 (166)
T 1w9e_A            4 DPREVILCKDQDGKIGLRLKSI-DNGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMT   82 (166)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEE-TTEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEE
T ss_pred             CCEEEEEEeCCCCcEeEEEEeC-CCCEEEEEECCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEE
Confidence            6899999997768999999864 46899999999999999999999999999999999999866666665 467799999


Q ss_pred             EEEC
Q psy7774         168 AHSD  171 (173)
Q Consensus       168 v~r~  171 (173)
                      ++|.
T Consensus        83 vr~~   86 (166)
T 1w9e_A           83 IRDR   86 (166)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9543

>3qik_A Phosphatidylinositol 3,4,5-trisphosphate-dependen exchanger 1 protein; PDZ domain, structural genomics consortium, SGC, hydrolase R; 2.29A {Homo sapiens}

Probab=99.35  E-value=5.7e-12  Score=84.05  Aligned_cols=80  Identities=24%  Similarity=0.322  Sum_probs=67.2

Q ss_pred             CEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC---CCCeEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK---PADKVTV  166 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~---~g~~v~l  166 (173)
                      ...+.+.+.. .+|||.+.. ...+.+|..|.+||||+++||++||+|++|||..+...+++++...++.   .++.+.|
T Consensus        18 ~~~l~l~~~~-~g~G~~l~~-~~~~~~I~~V~~gSpA~~AGL~~GD~I~~Ing~~v~~~s~~dv~~~i~~~~~~g~~v~L   95 (101)
T 3qik_A           18 AKRLLILPQE-EDYGFDIEE-KNKAVVVKSVQRGSLAEVAGLQVGRKIYSINEDLVFLRPFSEVESILNQSFCSRRPLRL   95 (101)
T ss_dssp             EEEEEECCCS-SSSSEEEEE-ETTEEEEEEECTTSHHHHHTCCTTCBEEEETTEESTTSCHHHHHHHHHHHHHTTCCEEE
T ss_pred             cCeEEEEeCC-CcccEEEEc-cCCCeEEEEECCCCHHHHcCCCCCCEEEEECCEEcCcCCHHHHHHHHHHhhccCCeEEE
Confidence            3456666654 899999975 3456889999999999999999999999999999988899999988875   6999999


Q ss_pred             EEEEC
Q psy7774         167 LAHSD  171 (173)
Q Consensus       167 ~v~r~  171 (173)
                      .|...
T Consensus        96 LV~~~  100 (101)
T 3qik_A           96 LVATK  100 (101)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            88643

>2yub_A LIMK-2, LIM domain kinase 2; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.34  E-value=7.2e-12  Score=86.32  Aligned_cols=83  Identities=25%  Similarity=0.335  Sum_probs=66.0

Q ss_pred             CEEEEEEc---cCCCcccEEEEcc-----CCCCEEEEEecC--CCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774          90 PRFLMIET---RKCSNLGISLVGG-----NAVGIYVHSVQS--GSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus        90 ~~~v~l~~---~~~~~lG~~l~gg-----~~~~i~V~~v~~--gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      ++.|++.+   ...+.|||.+...     ...+++|..|.+  +++|+++||+.||+|++|||..+.++++.++..+++.
T Consensus        13 ~~~v~l~~~~~~~~g~~G~~v~l~~~~~~~~~gv~V~~V~~~~~spA~~aGL~~GD~Il~Vng~~v~~~~~~dl~~~l~~   92 (118)
T 2yub_A           13 PYSVTLISMPATTECRRGFSVTVESASSNYATTVQVKEVNRMHISPNNRNAIHPGDRILEINGTPVRTLRVEEVEDAIKQ   92 (118)
T ss_dssp             CCEEEEEEECSCSSSSCSSEEEEECTTSSSCCEEEEEECCTTTSCTTHHHHCCTTCCEEEESSSBTTTSCHHHHHHHHHC
T ss_pred             CceeEEeccCCccCCCceEEEEeccccccCCCcEEEEEecCCCCChHHHcCCCCCCEEEEECCEECCCcCHHHHHHHHHh
Confidence            45555554   3234556665422     136899999999  9999999999999999999999999999999988876


Q ss_pred             CCCeEEEEEEECC
Q psy7774         160 PADKVTVLAHSDT  172 (173)
Q Consensus       160 ~g~~v~l~v~r~~  172 (173)
                      .+..+.|+|.|+.
T Consensus        93 ~g~~v~l~v~R~g  105 (118)
T 2yub_A           93 TSQTLQLLIEHDP  105 (118)
T ss_dssp             CSSCEEEEEEECS
T ss_pred             CCCEEEEEEEECC
Confidence            6889999999864

>1wh1_A KIAA1095 protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=99.32  E-value=5.2e-12  Score=87.63  Aligned_cols=80  Identities=24%  Similarity=0.439  Sum_probs=65.7

Q ss_pred             EEEEEEccC-CCcccEEEEccCC----CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC-CCCe
Q psy7774          91 RFLMIETRK-CSNLGISLVGGNA----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK-PADK  163 (173)
Q Consensus        91 ~~v~l~~~~-~~~lG~~l~gg~~----~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~-~g~~  163 (173)
                      +.+.+.+.. ..+|||.+.....    .+++|..|.++++|+++| |+.||+|++|||..+.+  +.++..+++. .+..
T Consensus        21 ~~~~~~~~~~~~~lG~~~~~~~~~~~~~gv~V~~V~~~spA~~aG~l~~GD~I~~ing~~v~~--~~~~~~~l~~~~g~~   98 (124)
T 1wh1_A           21 EEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEENKN   98 (124)
T ss_dssp             CCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSCCS
T ss_pred             EEEEEEecCCCCcccEEEEecCCCCCCCCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCCE
Confidence            345555543 3589999987653    689999999999999999 99999999999999974  7788888875 4789


Q ss_pred             EEEEEEECC
Q psy7774         164 VTVLAHSDT  172 (173)
Q Consensus       164 v~l~v~r~~  172 (173)
                      +.|+|.|+.
T Consensus        99 v~l~v~R~g  107 (124)
T 1wh1_A           99 FSLLIARPE  107 (124)
T ss_dssp             CCEEEEECS
T ss_pred             EEEEEEECC
Confidence            999999864

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.25  E-value=4.7e-12  Score=103.78  Aligned_cols=84  Identities=21%  Similarity=0.260  Sum_probs=72.6

Q ss_pred             CCEEEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC--CC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK--PA  161 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g  161 (173)
                      ..+.|.+.+..+++|||.+.+..    ..+++|..|.+||||+++| |+.||+|++|||.++.++++.+++.+++.  .+
T Consensus       204 ~~~~V~i~k~~ge~lG~~i~~~~~g~~~~g~~V~~V~~gspA~~aG~L~~GD~Il~VnG~~v~~~~~~~~~~~l~~~~~~  283 (388)
T 3suz_A          204 NCKELQLEKHKGEILGVVVVESGWGSILPTVILANMMNGGPAARSGKLSIGDQIMSINGTSLVGLPLATCQGIIKGLKNQ  283 (388)
T ss_dssp             CCEEEEECCCSSCCCCCCCBCC---CCSCCCBCCCCCCSSHHHHTCCCCTTCEEEEETTEECSSCCSTTHHHHTTTCTTC
T ss_pred             cceEEEEECCCCCceeEEEEecCCCCcCCCEEEEeeCCCCHHHHcCCCCCCCEEEEECCEEccCCCHHHHHHHHHhccCC
Confidence            56889999987789999998743    2368999999999999988 99999999999999999999999988876  45


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      ..+.|++.|..
T Consensus       284 ~~v~l~v~r~~  294 (388)
T 3suz_A          284 TQVKLNIVSCP  294 (388)
T ss_dssp             SCEEEEEEECC
T ss_pred             Ccccccccccc
Confidence            67999998863

>3suz_A Amyloid beta A4 precursor protein-binding family 2; APP binding; 2.70A {Rattus norvegicus} PDB: 1u3b_A 1u39_A 1x45_A 1u37_A 1u38_A 2yt8_A

Probab=99.25  E-value=1.4e-12  Score=106.90  Aligned_cols=65  Identities=26%  Similarity=0.472  Sum_probs=0.0

Q ss_pred             CcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEE
Q psy7774         101 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHS  170 (173)
Q Consensus       101 ~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r  170 (173)
                      .+|||.+.++     +|..|.+||+|+++||++||+|++|||.++.++++++++.+++..++.+.|++.+
T Consensus       308 ~~lG~~i~~g-----~I~~V~~gs~A~~aGL~~GD~Il~VNg~~v~~~s~~~~~~~l~~~~~~v~L~V~p  372 (388)
T 3suz_A          308 YQLGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATAHEKIVQALSNSVGEIHMKTMP  372 (388)
T ss_dssp             ----------------------------------------------------------------------
T ss_pred             CccceEEecC-----EEEEeecCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCeEEEEEEe
Confidence            5789988754     8999999999999999999999999999999999999999999999999888754

>1w9e_A Syntenin 1; cell adhesion, adhesion/complex, PDZ domain, scaffolding protein signaling protein; 1.56A {Homo sapiens} SCOP: b.36.1.1 b.36.1.1 PDB: 1n99_A 1v1t_A 1obz_A 1w9o_A 1w9q_A 1ybo_A

Probab=99.21  E-value=6.1e-10  Score=80.70  Aligned_cols=74  Identities=20%  Similarity=0.259  Sum_probs=61.7

Q ss_pred             EEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEE
Q psy7774          92 FLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHS  170 (173)
Q Consensus        92 ~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r  170 (173)
                      ++.+.+.....|||.+..    + +|..+.++++|+++||+.||+|++|||..+.++.+..+...+.+.+..+.+.+..
T Consensus        91 ~v~l~~~~~~~lG~~~~~----g-~v~~v~~~s~a~~aGl~~GD~I~~ing~~v~~~~~~~v~~~v~r~g~~~~l~v~~  164 (166)
T 1w9e_A           91 TITMHKDSTGHVGFIFKN----G-KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTITIMP  164 (166)
T ss_dssp             EEEEECCTTSCCSEEEET----T-EEEEECTTSHHHHTTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             EEEEecCCCCcEeEEEeC----C-EEEEEccCCHHHHcCCCCCCEEEEECCEECCCCChHHHHHHHhhCCCEEEEEEEE
Confidence            344443334678998873    3 8999999999999999999999999999999999999888888888988887753

>3i18_A LMO2051 protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 1.70A {Listeria monocytogenes} PDB: 2kjk_A 3i1e_A

Probab=98.91  E-value=4.6e-09  Score=69.91  Aligned_cols=58  Identities=26%  Similarity=0.332  Sum_probs=48.3

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      ..|++|..|.+++||+. ||+.||+|++|||..+.++  .+....+.  ..+..+.|++.|+.
T Consensus         6 ~~Gv~V~~V~~~spA~~-GL~~GD~I~~Ing~~v~~~--~dl~~~l~~~~~g~~v~l~v~R~g   65 (100)
T 3i18_A            6 YDGVYVMSVKDDVPAAD-VLHAGDLITEIDGNAFKSS--QEFIDYIHSKKVGDTVKINYKHGD   65 (100)
T ss_dssp             CCCEEEEEECTTSGGGG-TCCTTCEEEEETTBCCSSH--HHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             CCCEEEEEeCCCCchHH-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence            45899999999999996 9999999999999999765  45555554  46889999999863

>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR {Streptococcus pneumoniae}

Probab=98.90  E-value=5.4e-09  Score=73.32  Aligned_cols=58  Identities=21%  Similarity=0.240  Sum_probs=48.6

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      ..+++|..|.++|||+ +||+.||+|++|||..+.++.  +....+.  ..|+.+.|++.|+.
T Consensus        56 ~~g~~V~~V~~~spA~-aGL~~GD~I~~inG~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g  115 (134)
T 2l97_A           56 TSGVIVRSVQSNMPAN-GHLEKYDVITKVDDKEIASST--DLQSALYNHSIGDTIKITYYRNG  115 (134)
T ss_dssp             CSCEEEEECSTTSGGG-TTSCSSCEEEEETTEECCCHH--HHHHHHHHSSTTCEEEEEEEETT
T ss_pred             CCCEEEEEECCCCchH-HCCCCCCEEEEECCEEcCCHH--HHHHHHHhCCCCCEEEEEEEECC
Confidence            3689999999999999 999999999999999998754  4444443  37899999999864

>2kl1_A YLBL protein; structure genomics, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; NMR {Geobacillus thermodenitrificans}

Probab=98.87  E-value=2.9e-09  Score=70.15  Aligned_cols=58  Identities=29%  Similarity=0.410  Sum_probs=48.7

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      ..+++|..|.++|||+. ||+.||+|++|||..+.++  .+...++.  ..|+.+.|++.|+.
T Consensus         4 ~~Gv~V~~V~~~spA~~-GL~~GD~Il~InG~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g   63 (94)
T 2kl1_A            4 AKGVYVMSVLPNMPAAG-RLEAGDRIAAIDGQPINTS--EQIVSYVREKQAGDRVRVTFIRDR   63 (94)
T ss_dssp             CCCEECCCCCTTSTTBT-TBCTTCEEEEETTBCCCCH--HHHHHHHHHSCTTCCEEEEEEETT
T ss_pred             CCcEEEEEECCCChHHh-CCCCCCEEEEECCEECCCH--HHHHHHHHhCCCCCEEEEEEEECC
Confidence            35789999999999999 9999999999999999764  45555554  36899999999864

>2kjp_A Uncharacterized protein YLBL; mixed alpha-beta protein, cell membrane, hydrolase, membrane, protease, serine protease, transmembrane; NMR {Bacillus subtilis}

Probab=98.85  E-value=7.2e-10  Score=72.76  Aligned_cols=56  Identities=27%  Similarity=0.434  Sum_probs=48.0

Q ss_pred             CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeEEEEEEECC
Q psy7774         114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVTVLAHSDT  172 (173)
Q Consensus       114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v~l~v~r~~  172 (173)
                      |++|..|.++|||++ ||+.||+|++|||..+.+  ..+...++..  .|+.+.|++.|+.
T Consensus         2 Gv~V~~V~~~spA~~-GL~~GD~I~~InG~~v~~--~~~l~~~l~~~~~g~~v~l~v~R~g   59 (91)
T 2kjp_A            2 GIYASSVVENMPAKG-KIEVGDKIISADGKNYQS--AEKLIDYISSKKAGDKVTLKIEREE   59 (91)
T ss_dssp             CSSCCCCCCSSCCSS-CCCSSCEEEEETTBCCSS--HHHHHHHHSSCCSSCEECEEEESSS
T ss_pred             ceEEEEECCCChHHH-cCCCCCEEEEECCEECCC--HHHHHHHHHcCCCCCEEEEEEEECC
Confidence            578899999999999 999999999999999975  4566667754  5899999999864

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.84  E-value=5.2e-09  Score=78.64  Aligned_cols=60  Identities=30%  Similarity=0.261  Sum_probs=51.7

Q ss_pred             CCCEEEEEecCCCcccccCCCCC-CEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTG-DRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD  171 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~g-D~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~  171 (173)
                      ..|++|..|.++|||+++||+.| |+|++|||..+.++.+..........+..+.|++.|.
T Consensus        15 ~~G~~V~~V~~~SpA~~AGL~~G~D~I~~ing~~v~~~~~~~~~~~~~~~g~~v~l~v~R~   75 (209)
T 3rle_A           15 TEGYHVLRVQENSPGHRAGLEPFFDFIVSINGSRLNKDNDTLKDLLKANVEKPVKMLIYSS   75 (209)
T ss_dssp             SEEEEEEEECTTSHHHHTTCCTTTEEEEEETTEECCSSSSHHHHHHHHTTTSCEEEEEEET
T ss_pred             CCEEEEEEECCCCHHHHCCCCcCCeEEEEECCEECcCHHHHHHHHHhcCCCCEEEEEEEec
Confidence            56899999999999999999999 9999999999998876554334456789999999886

>2pzd_A Serine protease HTRA2; PDZ domain, apoptosis, mitochondria, peptid module, hydrolase; 2.75A {Homo sapiens} SCOP: b.36.1.4

Probab=98.84  E-value=9.9e-09  Score=69.60  Aligned_cols=58  Identities=28%  Similarity=0.377  Sum_probs=49.4

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ..+++|..|.++|||+++||+.||.|++|||..+.+  ..+....++. +..+.|++.|+.
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~--~~~~~~~l~~-~~~v~l~v~R~g   91 (113)
T 2pzd_A           34 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGR   91 (113)
T ss_dssp             SSCEEEEEEBTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHHH-CSSEEEEEEETT
T ss_pred             CCCeEEEEeCCCChHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhC-CCeEEEEEEECC
Confidence            468999999999999999999999999999999975  4566666654 688999998863

>3id1_A Regulator of sigma E protease; hydrolase, cell inner membrane, cell membrane, membrane, metal-binding, metalloprotease, transmembrane; 1.67A {Escherichia coli k-12} PDB: 2zpl_A

Probab=98.82  E-value=8.8e-09  Score=67.98  Aligned_cols=55  Identities=15%  Similarity=0.206  Sum_probs=45.4

Q ss_pred             EEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CC-CCeEEEEEEECC
Q psy7774         116 YVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KP-ADKVTVLAHSDT  172 (173)
Q Consensus       116 ~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~-g~~v~l~v~r~~  172 (173)
                      +|..|.++|+|+++||+.||+|++|||..+.++  .+....+. .. +..+.|+|.|+.
T Consensus         5 ~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~d~~~~l~~~~~~~~v~l~v~R~g   61 (95)
T 3id1_A            5 VVGEIAANSIAAEAQIAPGTELKAVDGIETPDW--DAVRLQLVDKIGDESTTITVAPFG   61 (95)
T ss_dssp             BEEEECTTSHHHHTTCCTTCEEEEETTEECSSH--HHHHHHHHHTTTCSEEEEEEECTT
T ss_pred             EEEeeCCCCHHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHHhcCCCcEEEEEEECC
Confidence            688999999999999999999999999999765  45555553 33 478999999874

>3rle_A Golgi reassembly-stacking protein 2; PDZ, tether, golgin, membrane protein; 1.65A {Homo sapiens} PDB: 4edj_A

Probab=98.82  E-value=8.7e-08  Score=71.92  Aligned_cols=68  Identities=22%  Similarity=0.178  Sum_probs=52.5

Q ss_pred             CcccEEEEcc-----CCCCEEEEEecCCCcccccCCCC-CCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEEC
Q psy7774         101 SNLGISLVGG-----NAVGIYVHSVQSGSLGYSAGLRT-GDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSD  171 (173)
Q Consensus       101 ~~lG~~l~gg-----~~~~i~V~~v~~gs~A~~~gL~~-gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~  171 (173)
                      ..||+.+..-     ...+++|..|.++|||+++||+. ||+|++|||. +.+...  ....++ ..+..+.|+|.|.
T Consensus        95 ~~lGi~~~~~~~~~~~~~Gv~V~~V~~~spA~~aGl~~~GD~I~~ing~-v~~~~~--l~~~l~~~~g~~v~l~v~r~  169 (209)
T 3rle_A           95 GLLGVSIRFCSFDGANENVWHVLEVESNSPAALAGLRPHSDYIIGADTV-MNESED--LFSLIETHEAKPLKLYVYNT  169 (209)
T ss_dssp             SSSCEEEEEEECTTGGGSCEEEEEECTTSHHHHHTCCTTTEEEEEESSC-CCSSSC--HHHHHHHTTTSCEEEEEEET
T ss_pred             CccceEEeecChhHccccceEEEEeCCCChHHHCCCCCCCCEEEECCCE-eCCHHH--HHHHHHhCCCCeEEEEEEEC
Confidence            4677777531     13689999999999999999999 9999999997 765543  333443 3788999999885

>1fc6_A Photosystem II D1 protease; D1 C-terminal processing protease, serine protease, serine- lysine catalytic DYAD, PDZ domain, photosynthesis; 1.80A {Scenedesmus obliquus} SCOP: b.36.1.3 c.14.1.2 PDB: 1fc9_A 1fc7_A 1fcf_A

Probab=98.81  E-value=2.7e-08  Score=81.36  Aligned_cols=73  Identities=21%  Similarity=0.348  Sum_probs=63.1

Q ss_pred             CCcccEEEEcc--CCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEECC
Q psy7774         100 CSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSDT  172 (173)
Q Consensus       100 ~~~lG~~l~gg--~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~~  172 (173)
                      ..++|+.+...  ...+++|..|.+++||+++||+.||+|++|||..+.+++..++..+++ ..|..|.|+|.|..
T Consensus        84 ~~giG~~~~~~~~~~~~~~V~~v~~~spA~~aGl~~GD~I~~Ing~~v~~~~~~~~~~~l~~~~g~~v~l~v~r~g  159 (388)
T 1fc6_A           84 VTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAPG  159 (388)
T ss_dssp             CBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEETT
T ss_pred             eEEEEEEEEEeecCCCcEEEEEeCCCChHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHhcCCCCEEEEEEEeCC
Confidence            35889988753  246899999999999999999999999999999999998888888886 56889999998863

>2i6v_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.63A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.80  E-value=6.7e-09  Score=67.33  Aligned_cols=58  Identities=22%  Similarity=0.271  Sum_probs=46.6

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      .|+.|..+.++++|+++||+.||+|++|||..+.++  .+...++.  ..++.+.|++.|+.
T Consensus        19 ~G~~V~~~~~~s~A~~aGl~~GD~I~~ing~~v~~~--~d~~~~~~~~~~g~~v~l~v~R~g   78 (87)
T 2i6v_A           19 LGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDP--NVMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             EEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCH--HHHHHHHHTGGGCSEEEEEEEETT
T ss_pred             EEEEEEeCCCCCHHHHCCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence            467788888888889999999999999999999765  44444454  36789999998864

>2p3w_A Probable serine protease HTRA3; PDZ domain, phage derived high affinity ligand, protein BIND; 1.70A {Homo sapiens}

Probab=98.74  E-value=2.4e-08  Score=67.60  Aligned_cols=58  Identities=24%  Similarity=0.375  Sum_probs=48.5

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ..+++|..|.++++|+++||+.||+|++|||..+.++  .+....++ .+..+.|++.|+.
T Consensus        34 ~~gv~V~~V~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~-~g~~v~l~v~R~g   91 (112)
T 2p3w_A           34 SSGIYVQEVAPNSPSQRGGIQDGDIIVKVNGRPLVDS--SELQEAVL-TESPLLLEVRRGN   91 (112)
T ss_dssp             CSSEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSH--HHHHHHHH-HCSSEEEEEEETT
T ss_pred             CCCeEEEEECCCChHHHCCCCCCCEEEEECCEECCCH--HHHHHHHh-CCCeEEEEEEECC
Confidence            3589999999999999999999999999999999754  55555553 5788999998863

>2i4s_A General secretion pathway protein C; EPSC, GSPC, PDZ domain, type 2 secretion system, protein transport, membrane protein; 1.92A {Vibrio cholerae} SCOP: b.36.1.5

Probab=98.74  E-value=3.4e-08  Score=66.22  Aligned_cols=59  Identities=22%  Similarity=0.300  Sum_probs=46.4

Q ss_pred             CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      |++|....|+++|+++||++||+|++|||..+.++............++.+.|++.|+.
T Consensus        38 G~~V~~~~pas~A~~aGl~~GDvI~~ing~~v~~~~d~~~~~~~~~~g~~v~l~v~R~g   96 (105)
T 2i4s_A           38 GYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDG   96 (105)
T ss_dssp             EEEEEECSCTHHHHHHTCCTTCEEEEETTEETTSTTHHHHHHHHHTTCSEEEEEEEETT
T ss_pred             EEEEecCCCCCHHHHcCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCeEEEEEEECC
Confidence            56677777777889999999999999999999988765433222357889999998864

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.72  E-value=2e-07  Score=77.32  Aligned_cols=58  Identities=24%  Similarity=0.276  Sum_probs=51.5

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .+++|..|.++++|+++||+.||+|++|||..+.+  .++...+++..++.+.|+|.|+.
T Consensus       363 ~gv~V~~V~~~spA~~aGL~~GD~I~~vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g  420 (436)
T 4a8c_A          363 KGIKIDEVVKGSPAAQAGLQKDDVIIGVNRDRVNS--IAEMRKVLAAKPAIIALQIVRGN  420 (436)
T ss_pred             CCEEEEEeCCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHhCCCeEEEEEEECC
Confidence            58999999999999999999999999999999975  57777888777779999999874

>1y8t_A Hypothetical protein RV0983; serine protease, structural genomics, PSI, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: b.36.1.4 b.47.1.1 PDB: 2z9i_A

Probab=98.72  E-value=5.2e-08  Score=77.71  Aligned_cols=57  Identities=16%  Similarity=0.288  Sum_probs=48.7

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEE
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHS  170 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r  170 (173)
                      ..+++|..|.+++||+++||+.||+|++|||..+.++  .+....+.  ..|+.+.|+|.|
T Consensus       241 ~~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R  299 (324)
T 1y8t_A          241 TLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSA--DALVAAVRSKAPGATVALTFQD  299 (324)
T ss_dssp             SSSEEEEEECTTSTTTTTTCCTTCEEEEETTEECCSH--HHHHHHHHTSCTTCEEEEEEEC
T ss_pred             CCceEEEEECCCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEE
Confidence            4589999999999999999999999999999999865  44444553  578999999998

>2zpm_A Regulator of sigma E protease; metalloproteinase, membrane protein, PDZ domain, hydrolase, inner membrane, membrane, metal-binding; HET: MLY MSE; 0.98A {Escherichia coli} PDB: 3id2_A 3id3_A 3id4_A

Probab=98.69  E-value=1.8e-08  Score=65.55  Aligned_cols=57  Identities=23%  Similarity=0.318  Sum_probs=46.7

Q ss_pred             CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEECC
Q psy7774         114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSDT  172 (173)
Q Consensus       114 ~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~~  172 (173)
                      .++|..|.++++|+++||+.||+|++|||..+.++  .+....+. ..+..+.|++.|+.
T Consensus         5 ~~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~--~~~~~~l~~~~g~~v~l~v~R~g   62 (91)
T 2zpm_A            5 EPVLENVQPNSAASXAGLQAGDRIVXVDGQPLTQW--VTFVMLVRDNPGXSLALEIERQG   62 (91)
T ss_dssp             -CBCSEECTTSHHHHTTCCTTCEEEEETTEECCCH--HHHHHHHHHCTTCCEEEEEEETT
T ss_pred             CeEEEEECCCChHHhcCCCCCCEEEEECCeEcCCH--HHHHHHHhcCCCCeEEEEEEECC
Confidence            35688999999999999999999999999999754  55555554 56889999998863

>1te0_A Protease DEGS; two domains, serine protease, PDZ, alpha-beta protein, hydro; 2.20A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3gdv_A* 3gcn_A* 3gds_A* 3gdu_A* 3gco_A* 1sot_A 1soz_A 1vcw_A 2r3y_A

Probab=98.67  E-value=6.3e-08  Score=77.09  Aligned_cols=58  Identities=24%  Similarity=0.365  Sum_probs=50.1

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      .+++|..|.+++||+++||+.||+|++|||..+.++  .+....+.  ..|+.+.|++.|+.
T Consensus       244 ~g~~V~~V~~~spA~~aGL~~GD~I~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g  303 (318)
T 1te0_A          244 QGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISA--LETMDQVAEIRPGSVIPVVVMRDD  303 (318)
T ss_dssp             CCEEEEEECTTSTTTTTCCCTTCCEEEETTEECCCH--HHHHHHHHTSCTTCEEEEEEESSS
T ss_pred             CcEEEEEeCCCChHHHCCCCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence            589999999999999999999999999999999764  45555564  57899999999864

>3k50_A Putative S41 protease; structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=98.67  E-value=2.7e-08  Score=81.77  Aligned_cols=69  Identities=17%  Similarity=0.193  Sum_probs=56.3

Q ss_pred             CCcccEEEEccCC--C--CEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774         100 CSNLGISLVGGNA--V--GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD  171 (173)
Q Consensus       100 ~~~lG~~l~gg~~--~--~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~  171 (173)
                      +.||||.+.....  .  .++|..|.+||||+++||+.||+|++|||..+.++.   ...+++..+..|.|++.|.
T Consensus        73 ~~G~~~~l~~~~~~~~~~~~~V~~V~~gsPA~~AGL~~GD~I~~InG~~v~~~~---~~~~l~~~g~~v~l~v~R~  145 (403)
T 3k50_A           73 SYGFDYTLYKVLDNDTAYNALISYVVPGSPAEEAGLQRGHWIMMMNGDYITKKV---ESELLQGSTRQLQIGVYKE  145 (403)
T ss_dssp             BCSEEEEEEECTTCSSCEEEEEEEECTTSHHHHTTCCTTCEEEEETTBCBCTTT---GGGGTSCSCEEEEEEEEEE
T ss_pred             ccceEEEEEEcCCCCcceeEEEEEeCCCChHHHcCCCCCCEEEEECCEEccchh---HHHHhhCCCCEEEEEEEeC
Confidence            4688888765432  2  378999999999999999999999999999998875   4455556788999999885

>2hga_A Conserved protein MTH1368; GFT structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: b.36.1.6

Probab=98.65  E-value=5.5e-08  Score=67.39  Aligned_cols=57  Identities=19%  Similarity=0.224  Sum_probs=47.6

Q ss_pred             CCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEEC
Q psy7774         111 NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSD  171 (173)
Q Consensus       111 ~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~  171 (173)
                      ...+++|..|.++++|+++ |+.||+|++|||..+.++  .+....+.  ..++.+.|++ |+
T Consensus        23 ~~~gv~V~~V~~~spA~~a-L~~GD~Il~InG~~v~~~--~dl~~~l~~~~~g~~v~l~V-R~   81 (125)
T 2hga_A           23 QPDGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNL--TTYSAALKTISVGEVINITT-DQ   81 (125)
T ss_dssp             CCCCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSSH--HHHHHHHTTCCTTCEEEEEE-TT
T ss_pred             CCCceEEEEECCCChHHHh-cCCCCEEEEECCEEcCCH--HHHHHHHHhcCCCCEEEEEE-EC
Confidence            3568999999999999999 999999999999999765  45555554  4688999998 65

>3stj_A Protease DEGQ; serine protease, PDZ domain, protease, chaperone, DEGP, DEGQ hydrolase; 2.60A {Escherichia coli}

Probab=98.63  E-value=4.8e-08  Score=78.75  Aligned_cols=58  Identities=31%  Similarity=0.419  Sum_probs=49.8

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.+++||+++||+.||+|++|||..+.++  .+....+.  ..|+++.|+|.|+.
T Consensus       263 ~G~~V~~V~~~spA~~aGL~~GDvI~~ing~~v~~~--~~l~~~l~~~~~g~~v~l~v~R~g  322 (345)
T 3stj_A          263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSF--AELRSRIATTEPGTKVKLGLLRNG  322 (345)
T ss_dssp             SSEEEEEECTTSHHHHHTCCTTCEECEETTEECSCH--HHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             ceEEEEEeccCChHHHcCCCCCCEEEEECCEECCCH--HHHHHHHHhcCCCCEEEEEEEECC
Confidence            588999999999999999999999999999999854  44545554  57999999999974

>4a8c_A Periplasmic PH-dependent serine endoprotease DEGQ; chaperone, hydrolase; 7.50A {Escherichia coli} PDB: 4a8a_A 4a8b_A 4a9g_A

Probab=98.58  E-value=1.2e-07  Score=78.73  Aligned_cols=60  Identities=27%  Similarity=0.360  Sum_probs=51.0

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.++|||+++||+.||+|++|||..+.++.+..........|+.+.|+|.|+.
T Consensus       263 ~G~~V~~V~~~spA~~aGL~~GD~I~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g  322 (436)
T 4a8c_A          263 RGAFVSEVLPGSGSAKAGVKAGDIITSLNGKPLNSFAELRSRIATTEPGTKVKLGLLRNG  322 (436)
T ss_pred             cceEEEEECCCChHHHCCCCCCCEEEEECCEECCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            589999999999999999999999999999999877655444333467899999999864

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.55  E-value=1.2e-07  Score=79.06  Aligned_cols=60  Identities=28%  Similarity=0.395  Sum_probs=50.7

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.+++||+++||+.||+|++|||..+.++.+..........|+.+.|+|.|+.
T Consensus       282 ~G~~V~~V~~~spA~~aGL~~GDvI~~vnG~~v~~~~~l~~~l~~~~~g~~v~l~V~R~g  341 (451)
T 3pv2_A          282 QGALVSQVNPNSPAELAGLKAGDIITQINDTKITQATQVKTTISLLRVGSTVKIIVERDN  341 (451)
T ss_dssp             CCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEETT
T ss_pred             ceEEEEecCCCChHHHcCCCCCCEEEEECCEEcCCHHHHHHHHHhcCCCCEEEEEEEECC
Confidence            689999999999999999999999999999999876544443333467899999999864

>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}

Probab=98.52  E-value=2.3e-07  Score=79.81  Aligned_cols=68  Identities=26%  Similarity=0.385  Sum_probs=54.9

Q ss_pred             CcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         101 SNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       101 ~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      ..||+.+... ..+++|..|.++|||+++||++||+|++|||..+....   ...+++  +.|+.|.|+|.|+.
T Consensus       485 ~~lG~~~~~~-~~gv~V~~V~~~spA~~AGL~~GD~I~aInG~~v~~~~---l~~~l~~~~~g~~v~l~v~R~g  554 (597)
T 4fgm_A          485 VNFGAKYKAS-PQGLDVLNVYHDESAYHAGLSAGDKIIAIDHLQATEQS---VKRILERYIPGDTVTIHAFRRD  554 (597)
T ss_dssp             CCCSEEEEEE-TTEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCTTT---HHHHHTTCCTTCEEEEEEEETT
T ss_pred             cccceEEecc-CCeEEEEEeCCCChHHHCCCCCCCEEEEECCEECCHHH---HHHHHHhcCCCCEEEEEEEECC
Confidence            5789987643 34799999999999999999999999999999995333   333443  57899999999974

>3qo6_A Protease DO-like 1, chloroplastic; protease, HTRA, PH-sensor, hydrolase, photosynthesis; 2.50A {Arabidopsis thaliana}

Probab=98.52  E-value=1.3e-07  Score=76.26  Aligned_cols=58  Identities=29%  Similarity=0.349  Sum_probs=49.8

Q ss_pred             CCEEEEEecCCCcccccCCCC-----------CCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRT-----------GDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~-----------gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.+++||+++||+.           ||+|++|||..+.++.  +....+.  +.|+++.|+|.|+.
T Consensus       251 ~Gv~V~~V~~~spA~~AGl~~~~~~~~~~l~~GDvI~~ing~~v~~~~--dl~~~l~~~~~g~~v~l~v~R~g  321 (348)
T 3qo6_A          251 SGVLVLDAPPSGPAGKAGLQSTKRDGYGRLVLGDIITSVNGTKVSNGS--DLYRILDQCKVGDEVTVEVLRGD  321 (348)
T ss_dssp             SSEEEEECCSSSHHHHHTCCCCEECSSSCEECCCEECEETTBCCSSSH--HHHHHHTTCCTTCEEEEEEECSS
T ss_pred             ceEEEEEecCCChHHHcCCccccccccCCCCCCCEEEEECCEEeCCHH--HHHHHHHhCCCcCEEEEEEEECC
Confidence            489999999999999999999           9999999999998764  4445553  56899999999874

>1lcy_A HTRA2 serine protease; apoptosis, PDZ domain, caspase activation, binding, hydrolase; 2.00A {Homo sapiens} SCOP: b.36.1.4 b.47.1.1

Probab=98.41  E-value=7.7e-07  Score=71.02  Aligned_cols=57  Identities=28%  Similarity=0.385  Sum_probs=49.0

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.+++||+++||+.||+|++|||..+.+  ..+....++. ++.+.|++.|+.
T Consensus       256 ~gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~--~~~l~~~l~~-~~~v~l~v~R~g  312 (325)
T 1lcy_A          256 HGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAVRT-QSQLAVQIRRGR  312 (325)
T ss_dssp             SCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHHTT-CSSEEEEEEETT
T ss_pred             CCeEEEEeCcCChHHHCCCCCCCEEEEECCEEcCC--HHHHHHHHhC-CCeEEEEEEECC
Confidence            58999999999999999999999999999999975  4555556654 689999999864

>3pv2_A DEGQ; trypsin fold, PDZ domain, chaperone protease, hydrolase; 2.15A {Legionella fallonii} PDB: 3pv3_A 3pv5_A 3pv4_A

Probab=98.41  E-value=4.2e-07  Score=75.74  Aligned_cols=58  Identities=21%  Similarity=0.320  Sum_probs=51.8

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.++++|+++||+.||+|++|||..+.+  .++...+++..+..+.|+|.|+.
T Consensus       386 ~Gv~V~~V~~gspA~~aGL~~GD~I~~Vng~~v~~--~~~~~~~l~~~~~~v~l~v~R~g  443 (451)
T 3pv2_A          386 IGVQVVGASENSAGWRAGIRPGDIIISANKKPVTD--VKSLQTIAQEKKKELLVQVLRGP  443 (451)
T ss_dssp             EEEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHTTSSCSCEEEEEEETT
T ss_pred             CceEEEEECCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHhcCCCeEEEEEEECC
Confidence            47899999999999999999999999999999975  47777788888889999999864

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.13  E-value=5.1e-07  Score=75.14  Aligned_cols=58  Identities=24%  Similarity=0.325  Sum_probs=49.2

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~~  172 (173)
                      .+++|..|.++++|+++||+.||+|++|||..+.++.  +....+.  ..|+.+.|+|.|+.
T Consensus       286 ~G~~V~~V~~gspA~~AGL~~GDvI~~inG~~v~~~~--~l~~~l~~~~~g~~v~l~v~R~g  345 (448)
T 1ky9_A          286 RGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFA--ALRAQVGTMPVGSKLTLGLLRDG  345 (448)
T ss_dssp             CSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSH--HHHHHTTSSBTTCCCEEEEESSS
T ss_pred             CceEEEEeccCCHHHHcCCCCCCEEEEECCEEcCCHH--HHHHHHHhcCCCCEEEEEEEECC
Confidence            4899999999999999999999999999999998874  4444554  47899999998863

>3num_A Serine protease HTRA1; DEGP, hydrolase; 2.75A {Homo sapiens} PDB: 3nzi_A 2ytw_A 2joa_A

Probab=98.10  E-value=3.8e-07  Score=72.97  Aligned_cols=57  Identities=18%  Similarity=0.372  Sum_probs=0.0

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.+++||+++||+.||+|++|||..+.++.  +....++. ++.+.|+|.|+.
T Consensus       254 ~g~~V~~v~~~spA~~aGl~~GD~I~~ing~~v~~~~--~~~~~l~~-~~~v~l~v~R~g  310 (332)
T 3num_A          254 SGAYIIEVIPDTPAEAGGLKENDVIISINGQSVVSAN--DVSDVIKR-ESTLNMVVRRGN  310 (332)
T ss_dssp             ------------------------------------------------------------
T ss_pred             CceEEEEeccCCChHHcCCCCCCEEEEECCEECCCHH--HHHHHHhC-CCeEEEEEEECC
Confidence            4789999999999999999999999999999997543  34344443 778888888863

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.10  E-value=9.6e-06  Score=73.30  Aligned_cols=69  Identities=14%  Similarity=0.141  Sum_probs=56.9

Q ss_pred             CCcccEEEEccCCCCEEEEEecCC--------CcccccC--CCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEE
Q psy7774         100 CSNLGISLVGGNAVGIYVHSVQSG--------SLGYSAG--LRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLA  168 (173)
Q Consensus       100 ~~~lG~~l~gg~~~~i~V~~v~~g--------s~A~~~g--L~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v  168 (173)
                      ..++|+.+.- ...+++|..|.+|        +||+++|  |+ ||+|++|||..+.++.  ++..+++ ..|..|.|+|
T Consensus       736 ~~g~G~~~~~-~~~~~~v~~v~~~~~~~~~~~spa~~ag~~l~-GD~I~~i~g~~~~~~~--~~~~~~~~~~g~~v~l~v  811 (1045)
T 1k32_A          736 SGRIACDFKL-DGDHYVVAKAYAGDYSNEGEKSPIFEYGIDPT-GYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRL  811 (1045)
T ss_dssp             CCBCSEEEEE-ETTEEEEEEECBSCTTSTTCBCGGGGGTCCCT-TCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEE
T ss_pred             cceecEEEEE-eCCEEEEEEecCCCcccccCCChHHHCCCCcC-CCEEEEECCEEccchh--hHHHhhcCCCCCEEEEEE
Confidence            4588888754 2457999999998        9999999  99 9999999999998876  4555665 6788999999


Q ss_pred             EECC
Q psy7774         169 HSDT  172 (173)
Q Consensus       169 ~r~~  172 (173)
                      .|..
T Consensus       812 ~r~~  815 (1045)
T 1k32_A          812 SGKG  815 (1045)
T ss_dssp             ECSS
T ss_pred             ECCC
Confidence            8863

>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease, trypsin, chaperone, PDZ, ATP-independent, temperature-regulated, periplasm; 2.80A {Escherichia coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A 3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A

Probab=98.05  E-value=5.4e-07  Score=75.01  Aligned_cols=68  Identities=19%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             ccEEEEcc-CCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         103 LGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       103 lG~~l~gg-~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      +|+.+..- ...+++|..|.++++|+++||+.||+|++|||..+.+  ..+...+++.....+.|+|.|+.
T Consensus       372 ~G~~l~~~~~~~gv~V~~V~~gspA~~aGL~~GDiI~~vng~~v~~--~~~l~~~l~~~~~~v~l~v~R~g  440 (448)
T 1ky9_A          372 EGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGD  440 (448)
T ss_dssp             -----------------------------------------------------------------------
T ss_pred             cceEeeccCCCCeEEEEEecCCCHHHHcCCCCCCEEEEECCEECCC--HHHHHHHHHcCCCeEEEEEEECC
Confidence            35554311 1357899999999999999999999999999999975  45566667655558888888863

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=98.01  E-value=1.3e-05  Score=68.12  Aligned_cols=59  Identities=15%  Similarity=0.155  Sum_probs=47.7

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCH----------HHHHHHHhCCCCeEEEEEEECC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATA----------EEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~----------~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      .|++|..|.++|||+++ |+.||.|++|||..+.....          .......+.+|++|.|+|.|+.
T Consensus       277 ~Gv~V~~V~~~spA~~a-l~~GDvI~~idg~~V~~~g~~~~~~~~~~~l~~~v~~~~~Gd~v~l~v~R~G  345 (539)
T 4fln_A          277 EGVLVRRVEPTSDASKV-LKEGDVIVSFDDLHVGCEGTVPFRSSERIAFRYLISQKFAGDIAEIGIIRAG  345 (539)
T ss_dssp             BCEEEEEECTTSGGGGT-CCTTCEEEEETTEECBSSSEEECSTTCEEETHHHHHTSCTTCEEEEEEEETT
T ss_pred             CceeeecccCCChHHhC-ccCCCEEEEECCEEeCcCCeeccccchhHHHHHHHHcCCCCCEEEEEEEECC
Confidence            58999999999999876 99999999999999965432          1222234678999999999974

>4fln_A Protease DO-like 2, chloroplastic; protease, DEG, PDZ, hydrolase; 2.80A {Arabidopsis thaliana}

Probab=96.60  E-value=0.0038  Score=53.00  Aligned_cols=55  Identities=11%  Similarity=0.094  Sum_probs=44.2

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCC-CCeEEEEE
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP-ADKVTVLA  168 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~-g~~v~l~v  168 (173)
                      ..+++|+.|.++++|...|++.||+|++|||+.+.++.+  ...+++++ +..+.|.+
T Consensus       414 ~~gVvvs~V~~~s~a~~~g~~~gdiI~~vNg~~V~s~~~--l~~~l~~~k~~~l~~~~  469 (539)
T 4fln_A          414 EQIVILSQVLANEVNIGYEDMNNQQVLKFNGIPIRNIHH--LAHLIDMCKDKYLVFEF  469 (539)
T ss_dssp             CCCEEEEEECCCGGGTTCSSCCSEEEEEETTEECCSHHH--HHHHHHTCCSSEEEEEE
T ss_pred             ceEEEEEEecCCchhhhcCCCCCCEEEeECCEEcCCHHH--HHHHHHHcCCCeEEEEE
Confidence            358999999999999999999999999999999987654  45566654 45556554

>1r6j_A Syntenin 1; PDZ, membrane protein; 0.73A {Homo sapiens} SCOP: b.36.1.1 PDB: 1nte_A 1obx_A 1oby_A

Probab=96.26  E-value=0.0055  Score=38.82  Aligned_cols=26  Identities=15%  Similarity=0.198  Sum_probs=23.4

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEe
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQY   26 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r   26 (173)
                      +.+++|+||+++||+++..|+|+|..
T Consensus        55 v~~~~~~evv~llr~~g~~V~L~v~p   80 (82)
T 1r6j_A           55 VIGLKDSQIADILSTSGTVVTITIMP   80 (82)
T ss_dssp             CTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             cCCCCHHHHHHHHhcCCCEEEEEEEe
Confidence            46789999999999999999999864

>3soe_A Membrane-associated guanylate kinase, WW and PDZ containing protein 3; structural genomics consortium, SGC, PDZ domain, signaling P; 1.60A {Homo sapiens}

Probab=96.23  E-value=0.0062  Score=41.00  Aligned_cols=30  Identities=20%  Similarity=0.294  Sum_probs=26.0

Q ss_pred             CCcccHHHHHHHHhhC--CCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQC--GNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~--g~~v~L~V~r~~~~   30 (173)
                      +++++|+||+++|+++  |+.|+|+|.|+...
T Consensus        64 v~~~~h~evv~~lk~~~~G~~v~L~V~R~g~~   95 (113)
T 3soe_A           64 VQNLTHLQVVEVLKQFPVGADVPLLILRGGPP   95 (113)
T ss_dssp             CTTSCHHHHHHHHHHSCTTCEEEEEEEESSCC
T ss_pred             CCCCCHHHHHHHHHcCCCCCEEEEEEEECCcc
Confidence            4688999999999996  78999999997653

>1z87_A Alpha-1-syntrophin; protein binding; NMR {Mus musculus}

Probab=94.16  E-value=0.17  Score=38.89  Aligned_cols=30  Identities=27%  Similarity=0.429  Sum_probs=26.7

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      +.+++|++++.+|+.+++.|+|+|.|..+.
T Consensus       136 v~~~t~~e~v~~l~~~g~~V~L~V~R~~~~  165 (263)
T 1z87_A          136 LSSATHDEAVQALKKTGKEVVLEVKYMKEV  165 (263)
T ss_dssp             CTTSCHHHHHHHHHHCCSCCCEEEECCSSS
T ss_pred             CCCcCHHHHHHHHhcCCCeEEEEEEeCccc
Confidence            467899999999999999999999987664

>1v62_A KIAA1719 protein; structural genomics, synaptic transmission, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=93.64  E-value=0.13  Score=34.17  Aligned_cols=29  Identities=10%  Similarity=0.180  Sum_probs=25.6

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      .+.+|++++.+|+++++.|.|+|.|+...
T Consensus        76 ~~~~~~~~~~~l~~~g~~v~l~v~r~~~~  104 (117)
T 1v62_A           76 EHCSLLEATKLLASISEKVRLEILPVPQS  104 (117)
T ss_dssp             TSCCHHHHHHHHHSCSSEEEEEECCBTTB
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEEEECCCC
Confidence            46899999999999999999999987653

>3e17_A Tight junction protein ZO-2; domain swapping, alternative promoter usage, alternative splicing, cell junction, cell membrane, disease mutation; 1.75A {Homo sapiens}

Probab=93.42  E-value=0.079  Score=33.41  Aligned_cols=29  Identities=7%  Similarity=0.174  Sum_probs=23.9

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      .+.+|++++++|+++++.|+|+|.+.+..
T Consensus        55 ~~~~~~~~~~~i~~~~~~v~L~v~~~~~~   83 (88)
T 3e17_A           55 ENMSLTDARKLIEKSRGKLQLVVLRDLEH   83 (88)
T ss_dssp             TTCCHHHHHHHHHHTTTEEEEEECCC---
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEeCCCcc
Confidence            56899999999999999999999876554

>3axa_A Afadin, nectin-3, protein AF-6; PDZ domain, fusion protein, cell adhesion; 2.78A {Mus musculus} PDB: 1xz9_A 2exg_A* 1t2m_A 2ain_A

Probab=93.02  E-value=0.16  Score=32.95  Aligned_cols=32  Identities=13%  Similarity=0.124  Sum_probs=27.2

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCccC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYH   32 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~   32 (173)
                      +.+++|++++.+++.+++.|.|+|.|+...+.
T Consensus        71 v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~~~  102 (106)
T 3axa_A           71 LVGLSQERAAELMTRTSSVVTLEVAKQGAIRR  102 (106)
T ss_dssp             CTTCCHHHHHHHHHTCCSEEEEEEECCCSSCC
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEeCCcccc
Confidence            35678999999999999999999999876543

>1ujv_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics, KIAA0705 protein; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=92.87  E-value=0.17  Score=32.39  Aligned_cols=29  Identities=10%  Similarity=0.458  Sum_probs=24.7

Q ss_pred             CCcccHHHHHHHHhhC--CCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQC--GNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~--g~~v~L~V~r~~~   29 (173)
                      +.+++|++++++|+.+  ++.|.|+|.|+..
T Consensus        62 v~~~~~~~~~~~l~~~~~g~~v~l~v~R~g~   92 (96)
T 1ujv_A           62 VQNLSHTEVVDILKDCPIGSETSLIIHRGSG   92 (96)
T ss_dssp             CSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred             CCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence            3567899999999994  7899999998754

>2kpk_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; PDZ domain, ATP-binding, cell junction, cell membrane; NMR {Homo sapiens} PDB: 2kpl_A

Probab=92.87  E-value=0.4  Score=32.32  Aligned_cols=29  Identities=10%  Similarity=0.067  Sum_probs=25.0

Q ss_pred             CcccHHHHHHHHhhC--CCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQC--GNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~~--g~~v~L~V~r~~~~   30 (173)
                      .+++|++++++|+.+  ++.|.|+|.|+...
T Consensus        77 ~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  107 (129)
T 2kpk_A           77 LGHTHAQVVKIFQSIPIGASVDLELCRGYPL  107 (129)
T ss_dssp             TTSCHHHHHHHHHHSCTTEEEEEEEEECSCC
T ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCCC
Confidence            567899999999997  78899999987653

>2dc2_A GOPC, golgi associated PDZ and coiled-coil motif containing isoform B; GOPC PDZ domain, structural protein; NMR {Homo sapiens}

Probab=92.55  E-value=0.16  Score=32.90  Aligned_cols=30  Identities=23%  Similarity=0.278  Sum_probs=24.8

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      +.+++|++++.+|+++++.|+|+|.+....
T Consensus        68 v~~~~~~~~~~~l~~~~~~v~l~v~~~~~~   97 (103)
T 2dc2_A           68 LRDTKHKEAVTILSQQRGEIEFEVVYVALE   97 (103)
T ss_dssp             STTSCHHHHHHHHHHCCSEEEEEEEECC--
T ss_pred             CCCCCHHHHHHHHHhCCCcEEEEEEecCCc
Confidence            357899999999999999999999876553

>1ueq_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=92.41  E-value=0.39  Score=32.07  Aligned_cols=29  Identities=10%  Similarity=0.094  Sum_probs=24.8

Q ss_pred             CcccHHHHHHHHhh--CCCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQ--CGNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~--~g~~v~L~V~r~~~~   30 (173)
                      .+++|++++++|++  .++.|.|+|.|+...
T Consensus        78 ~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  108 (123)
T 1ueq_A           78 LGHTHADVVKLFQSVPIGQSVNLVLCRGYPL  108 (123)
T ss_dssp             TTSCHHHHHHHHHTSCTTCEEEEEEEESCCC
T ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCCC
Confidence            46789999999999  579999999987654

>1wha_A KIAA0147 protein, scribble; PDZ domain, cellular signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=92.33  E-value=0.17  Score=32.84  Aligned_cols=29  Identities=21%  Similarity=0.282  Sum_probs=25.6

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      .+++|++++.+|+.+++.|.|+|.|+.+.
T Consensus        72 ~~~~~~~~~~~l~~~g~~v~l~v~R~~~~  100 (105)
T 1wha_A           72 TEARHDHAVSLLTAASPTIALLLEREAGS  100 (105)
T ss_dssp             TTCCHHHHHHHHTSCCSCEEEEEEECCCC
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            56789999999999999999999998653

>4amh_A Disks large homolog 1; permutation, protein folding, structural protein; 2.30A {Homo sapiens}

Probab=92.06  E-value=0.21  Score=32.57  Aligned_cols=29  Identities=14%  Similarity=0.184  Sum_probs=25.5

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+++|++++.+|+++++.|.|+|.|+..
T Consensus        65 v~~~~~~~~~~~l~~~~~~v~l~v~R~~~   93 (106)
T 4amh_A           65 LEEVTHEEAVTALKNTSDFVYLKVAKPGS   93 (106)
T ss_dssp             CSSCCHHHHHHHHHSCCSEEEEEEECCSS
T ss_pred             CCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Confidence            35689999999999999999999998754

>3gge_A PDZ domain-containing protein GIPC2; structural genomics, structural genomics consort protein binding; 2.60A {Homo sapiens}

Probab=91.64  E-value=0.23  Score=32.12  Aligned_cols=27  Identities=15%  Similarity=-0.018  Sum_probs=21.8

Q ss_pred             CCcccHHHHHHHHhhC--CCeEEEEEEeC
Q psy7774           1 MRSATYQLAASVLRQC--GNSITMLVQYS   27 (173)
Q Consensus         1 l~~~th~~av~~L~~~--g~~v~L~V~r~   27 (173)
                      +.+++|+|++++||++  |..++|++.+.
T Consensus        61 v~g~~h~evv~lLk~~~~g~~~~L~lv~p   89 (95)
T 3gge_A           61 IVGWRHYDVAKKLKELKKEELFTMKLIEP   89 (95)
T ss_dssp             CTTCCHHHHHHHHHHSCTTCEEEEEEEEE
T ss_pred             ccCCCHHHHHHHHHhCCCCCEEEEEEECc
Confidence            4678999999999995  56788877653

>2dkr_A LIN-7 homolog B; LIN-7B, PDZ, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.49  E-value=0.22  Score=31.33  Aligned_cols=28  Identities=18%  Similarity=0.366  Sum_probs=24.4

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++|++++.+|+.+++.|.|+|.|++.
T Consensus        64 ~~~~~~~~~~~~~~~~~~v~l~v~r~~~   91 (93)
T 2dkr_A           64 EGEQHEKAVELLKAAQGSVKLVVRSGPS   91 (93)
T ss_dssp             TTSCHHHHHHHHHHCCSEEEEEECCCCS
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEEEeCCC
Confidence            4678999999999999999999998764

>2kv8_A RGS12, regulator of G-protein signaling 12; PDZ domain, signaling protein; NMR {Homo sapiens}

Probab=91.47  E-value=0.23  Score=30.54  Aligned_cols=28  Identities=11%  Similarity=0.334  Sum_probs=24.1

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSP   28 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~   28 (173)
                      +.+.+|++++.+|+.+++.|.|+|.|++
T Consensus        55 v~~~~~~~~~~~l~~~~~~v~l~v~R~~   82 (83)
T 2kv8_A           55 VKKASHEDVVKLIGKCSGVLHMVIAEGV   82 (83)
T ss_dssp             CSSCCHHHHHHHHTTCSSCEEEEEECCC
T ss_pred             CCCCCHHHHHHHHHhCCCeEEEEEEcCC
Confidence            3567899999999998889999999864

>3o46_A Maguk P55 subfamily member 7; PDZ domain, structural genomics consortium, SGC, protein BIN; 1.30A {Homo sapiens} SCOP: b.36.1.0

Probab=91.36  E-value=0.2  Score=31.68  Aligned_cols=28  Identities=14%  Similarity=0.120  Sum_probs=23.5

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+.+|++++++|+.+++.|+|+|.+...
T Consensus        62 ~~~~~~~~~~~l~~~~~~v~l~v~~~~~   89 (93)
T 3o46_A           62 EDKRPEEIIQILAQSQGAITFKIIPGSK   89 (93)
T ss_dssp             TTSCHHHHHHHHHHCCEEEEEEEECC--
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEEEeCCC
Confidence            5689999999999999999999987544

>2he4_A Na(+)/H(+) exchange regulatory cofactor NHE-RF2; phosphorylation, structural genomics, structural genomics consortium, SGC, unknown function; 1.45A {Homo sapiens} PDB: 2ozf_A

Probab=91.32  E-value=0.3  Score=30.50  Aligned_cols=29  Identities=7%  Similarity=0.063  Sum_probs=25.0

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+.+|++++++|+.+++.|.|+|.|...
T Consensus        60 v~~~~~~~~~~~l~~~~~~v~l~v~r~~~   88 (90)
T 2he4_A           60 VEGLRHAEVVASIKAREDEARLLVVGPST   88 (90)
T ss_dssp             CTTSCHHHHHHHHTTSSSEEEEEEECCCC
T ss_pred             CCCCCHHHHHHHHHcCCCcEEEEEEccCC
Confidence            35678999999999999999999998654

>2i1n_A Discs, large homolog 3; DLG3, PDZ, PDZ domain, signal transduction, structural genom structural genomics consortium, SGC, signaling protein; 1.85A {Homo sapiens} PDB: 2wl7_A 3rl7_B 1rgr_A* 1kef_A 1zok_A 1iu0_A 1iu2_A

Probab=91.20  E-value=0.31  Score=31.28  Aligned_cols=30  Identities=13%  Similarity=0.255  Sum_probs=25.9

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      +.+++|++++.+++.+++.|.|+|.|+...
T Consensus        67 v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   96 (102)
T 2i1n_A           67 VSEVVHSRAVEALKEAGPVVRLVVRRRQPP   96 (102)
T ss_dssp             CSSCCHHHHHHHHHHSCSEEEEEEEEECCC
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence            356889999999999999999999987653

>2edv_A FERM and PDZ domain-containing protein 1; cytoskeletal-associated protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.09  E-value=0.27  Score=31.38  Aligned_cols=27  Identities=19%  Similarity=0.386  Sum_probs=24.6

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSP   28 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~   28 (173)
                      .+++|++++.+++.+++.|.|+|.|+.
T Consensus        63 ~~~~~~~~~~~~~~~g~~v~l~v~R~~   89 (96)
T 2edv_A           63 EDLSWERAVDILREAEDSLSITVVRCT   89 (96)
T ss_dssp             TTCCHHHHHHHHHHCSSCEEEEEEECC
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            567899999999999999999999976

>2dlu_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=90.99  E-value=0.26  Score=32.19  Aligned_cols=29  Identities=45%  Similarity=0.699  Sum_probs=25.2

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      .+++|++++.+|+.+++.|.|+|.|+...
T Consensus        72 ~~~~~~~~~~~l~~~g~~v~l~v~R~~~~  100 (111)
T 2dlu_A           72 QGMTSEQVAQVLRNCGNSVRMLVARDPAG  100 (111)
T ss_dssp             TTSCHHHHHHHHHHHCSEEEEEEEESCTT
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEEEeCCCC
Confidence            46789999999999999999999987653

>2dm8_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=90.83  E-value=0.61  Score=30.56  Aligned_cols=32  Identities=22%  Similarity=0.388  Sum_probs=26.6

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCccC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYH   32 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~   32 (173)
                      +.+++|++++.+|+.+++.|.|+|.|+...+.
T Consensus        76 v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~~~  107 (116)
T 2dm8_A           76 LRNSSHEEAITALRQTPQKVRLVVYRDEAHYR  107 (116)
T ss_dssp             CSSSCHHHHHHHHHTCCSEEEEEEECCSSCCC
T ss_pred             CCCCCHHHHHHHHHhCCCeEEEEEEeCCcccc
Confidence            35678999999999999999999998766543

>3cbz_A Dishevelled-2; PDZ domain, phage derived high affinity ligand, cytoplasm, developmental protein, phosphoprotein, WNT signaling pathway; 1.38A {Homo sapiens} PDB: 3cby_A 3cc0_A 3cbx_A 2rey_A 2f0a_A 1l6o_A 3fy5_A 2kaw_A* 1mc7_A

Probab=90.77  E-value=0.23  Score=32.43  Aligned_cols=29  Identities=24%  Similarity=0.231  Sum_probs=24.0

Q ss_pred             CCcccHHHHHHHHhhC---CCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQC---GNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~---g~~v~L~V~r~~~   29 (173)
                      +.+++|++++++|+++   +..|.|+|.|...
T Consensus        66 v~~~~~~~~~~~l~~~~~~~~~v~l~v~R~~~   97 (108)
T 3cbz_A           66 FENMSNDDAVRVLRDIVHKPGPIVLTVAKSGG   97 (108)
T ss_dssp             TTSCCHHHHHHHHHHHHTSSSCEEEEEECCCC
T ss_pred             CCCCCHHHHHHHHHhcccCCCeEEEEEEeCCC
Confidence            4578899999999997   5579999998644

>2awx_A Synapse associated protein 97; membrane protein, synaptic signaling, trafficking protein; HET: HIS; 1.80A {Rattus norvegicus} PDB: 2g2l_A 2awu_A 2aww_A 3rl8_A

Probab=90.60  E-value=0.36  Score=31.21  Aligned_cols=30  Identities=13%  Similarity=0.181  Sum_probs=25.6

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      +.+++|++++.+++++++.|.|+|.|+...
T Consensus        66 v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~   95 (105)
T 2awx_A           66 LEEVTHEEAVTALKNTSDFVYLKVAKPTSM   95 (105)
T ss_dssp             CTTCBHHHHHHHHHSCCSEEEEEEECCCC-
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEcCCCC
Confidence            356889999999999999999999987664

>2koj_A Partitioning defective 3 homolog; PDZ domain, structural genomics, alternative splicing, cell cycle, cell division, cell junction, coiled coil; NMR {Mus musculus} PDB: 2ogp_A

Probab=90.53  E-value=0.55  Score=30.52  Aligned_cols=31  Identities=19%  Similarity=0.381  Sum_probs=25.8

Q ss_pred             CcccHHHHHHHHhhC--CCeEEEEEEeCCCccC
Q psy7774           2 RSATYQLAASVLRQC--GNSITMLVQYSPDKYH   32 (173)
Q Consensus         2 ~~~th~~av~~L~~~--g~~v~L~V~r~~~~~~   32 (173)
                      .+.+|++++++|+.+  ++.|.|+|.|+...+.
T Consensus        73 ~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~~~  105 (111)
T 2koj_A           73 AGKSQEEVVSLLRSTKMEGTVSLLVFRQEEAFH  105 (111)
T ss_dssp             TTSCHHHHHHHHHHCCCSSEEEEEEEECCCCCC
T ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEeCCCCcc
Confidence            467899999999985  8899999998776544

>2jil_A GRIP1 protein, glutamate receptor interacting protein-1; endoplasmic reticulum, postsynaptic membrane, membrane, MEMB protein; 1.5A {Homo sapiens}

Probab=90.47  E-value=0.35  Score=30.67  Aligned_cols=28  Identities=32%  Similarity=0.595  Sum_probs=24.8

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .++++++++.+|+.+++.|.|+|.|+..
T Consensus        66 ~~~~~~~~~~~l~~~g~~v~l~v~R~~~   93 (97)
T 2jil_A           66 LGTTHAEAMSILKQCGQEAALLIEYDVS   93 (97)
T ss_dssp             SSCCHHHHHHHHHHSCSEEEEEEEEECC
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            4678999999999999999999998765

>2vwr_A Ligand of NUMB protein X 2; protein-binding, metal-binding, zinc, LNX2_human, zinc-finger, polymorphism, ring finger protein 1; 1.3A {Homo sapiens}

Probab=90.46  E-value=0.44  Score=30.06  Aligned_cols=29  Identities=17%  Similarity=0.395  Sum_probs=25.2

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+++|.+++.+++.+++.|.|+|.|+..
T Consensus        62 v~~~~~~~~~~~~~~~g~~v~l~v~R~~~   90 (95)
T 2vwr_A           62 LKYGTPELAAQIIQASGERVNLTIARPGK   90 (95)
T ss_dssp             CTTCCHHHHHHHHHHCCSEEEEEEEEESC
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEEEEcCCc
Confidence            35678999999999999999999998655

>2csj_A TJP2 protein; PDZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.36.1.1

Probab=90.41  E-value=0.32  Score=32.15  Aligned_cols=30  Identities=20%  Similarity=0.297  Sum_probs=25.8

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      +.+++|++++.+|+++++.|.|+|.|....
T Consensus        77 v~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  106 (117)
T 2csj_A           77 MEDVLHSFAVQQLRKSGKIAAIVVKRPRKV  106 (117)
T ss_dssp             CBTCCHHHHHHHHHHSCSEEEEEEEEEEEC
T ss_pred             CCCcCHHHHHHHHhcCCCeEEEEEEECCcc
Confidence            357889999999999999999999986553

>1uit_A Human discs large 5 protein; PDZ domain, HDLG5, maguk family, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=90.33  E-value=0.52  Score=31.03  Aligned_cols=33  Identities=39%  Similarity=0.472  Sum_probs=27.5

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCccCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHE   33 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~~   33 (173)
                      +.++++.+++.+++..++.|.|+|.|+...+..
T Consensus        74 v~~~~~~~~~~~~~~~g~~v~l~v~r~~~~~~~  106 (117)
T 1uit_A           74 LRSATEQQARLIIGQQCDTITILAQYNPHVHQL  106 (117)
T ss_dssp             TTTCCHHHHHHHTTSCCSEEEEEECCCSCCCCC
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEECCchhhh
Confidence            356788999988888999999999998887653

>2opg_A Multiple PDZ domain protein; structural protein, structural genomics, structural genomics consortium, SGC; 1.50A {Homo sapiens}

Probab=90.29  E-value=0.51  Score=29.92  Aligned_cols=30  Identities=27%  Similarity=0.289  Sum_probs=25.6

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      +.+++|++++.+++.+++.|.|+|.|+...
T Consensus        63 v~~~~~~~~~~~~~~~~~~v~l~v~R~~~~   92 (98)
T 2opg_A           63 LRKATHDEAINVLRQTPQRVRLTLYRDEAP   92 (98)
T ss_dssp             CTTCCHHHHHHHHHTCCSEEEEEEEECSSC
T ss_pred             CCCCCHHHHHHHHHhCCCeEEEEEEcCCCC
Confidence            356789999999999999999999987654

>2qg1_A Multiple PDZ domain protein; MPDZ, MUPP1, structural genomics, structural genomics consortium, SGC, signaling protein; 1.40A {Homo sapiens}

Probab=90.21  E-value=0.43  Score=29.86  Aligned_cols=28  Identities=25%  Similarity=0.256  Sum_probs=24.5

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++|++++.+++.+++.|.|+|.|...
T Consensus        63 ~~~~~~~~~~~~~~~~~~v~l~v~R~~~   90 (92)
T 2qg1_A           63 RNATQEAVAALLKCSLGTVTLEVGRIST   90 (92)
T ss_dssp             TTCCHHHHHHHHHHCCSEEEEEEECCCC
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEcccc
Confidence            5678999999999999999999998753

>3khf_A Microtubule-associated serine/threonine-protein kinase 3; MAST3, microtubule associated serine/threonine kinase 3, PDZ domain, structural genomics; 1.20A {Homo sapiens} PDB: 2w7r_A 2kqf_A 2kyl_A 3ps4_A

Probab=89.87  E-value=0.46  Score=30.21  Aligned_cols=28  Identities=14%  Similarity=0.114  Sum_probs=24.7

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++|++++.+|+.+++.|.|+|.|+..
T Consensus        67 ~~~~~~~~~~~l~~~g~~v~l~v~r~~~   94 (99)
T 3khf_A           67 LGLVHMDVVELLLKSGNKISLRTTALEN   94 (99)
T ss_dssp             TTCCHHHHHHHHHHSCSEEEEEEECSCS
T ss_pred             CCCCHHHHHHHHhcCCCEEEEEEEECCC
Confidence            4678999999999999999999998654

>3i4w_A Disks large homolog 4; alpha and beta protein, alternative splicing, cell junction, cell membrane, lipoprotein, membrane, palmitate, phosphoprotein; 1.35A {Homo sapiens} SCOP: b.36.1.1 PDB: 3k82_A* 3jxt_A* 2he2_A 1pdr_A 2i0i_A

Probab=89.75  E-value=0.25  Score=31.78  Aligned_cols=31  Identities=35%  Similarity=0.730  Sum_probs=26.8

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCCccC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPDKYH   32 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~~~   32 (173)
                      .+.++.+++.+++.+++.|.|+|.|+++.|.
T Consensus        69 ~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~~   99 (104)
T 3i4w_A           69 RNASHEQAAIALKNAGQTVTIIAQYKPEEYS   99 (104)
T ss_dssp             TTCCHHHHHHHHHTSCSEEEEEEEECHHHHH
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEECcchhh
Confidence            5688999999999999999999999876543

>1n7e_A AMPA receptor interacting protein GRIP; PDZ, protein binding; 1.50A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1n7f_A

Probab=89.75  E-value=0.48  Score=30.06  Aligned_cols=28  Identities=18%  Similarity=0.373  Sum_probs=24.3

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+.+|++++.+|+.+++.|.|+|.|+..
T Consensus        64 ~~~~~~~~~~~l~~~g~~v~l~v~R~~~   91 (97)
T 1n7e_A           64 KGKPLSEAIHLLQMAGETVTLKIKKQTD   91 (97)
T ss_dssp             TTCCHHHHHHHHHTCCSEEEEEEECCCC
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            4568999999999889999999998654

>2g5m_B Neurabin-2; spinophilin, PDZ domain, CNS, synaptic transmission, protein binding; NMR {Rattus norvegicus}

Probab=89.68  E-value=0.38  Score=31.49  Aligned_cols=30  Identities=23%  Similarity=0.310  Sum_probs=26.0

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      +.+++|.+++.+++.+++.|.|+|.|+...
T Consensus        68 v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   97 (113)
T 2g5m_B           68 LVGVTQSFAASVLRNTKGRVRFMIGRERPG   97 (113)
T ss_dssp             CSSCCHHHHHHHHHHSCSSCEEEEEECCCC
T ss_pred             CCCCCHHHHHHHHhcCCCeEEEEEEeCCCC
Confidence            356789999999999999999999987654

>1kwa_A Hcask/LIN-2 protein; PDZ domain, neurexin, syndecan, receptor clustering, kinase; 1.93A {Homo sapiens} SCOP: b.36.1.1

Probab=89.66  E-value=0.33  Score=30.40  Aligned_cols=28  Identities=25%  Similarity=0.196  Sum_probs=23.3

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++|++++++|+.+.+.|+|+|.|...
T Consensus        59 ~~~~~~~~~~~l~~~~~~v~l~v~r~~~   86 (88)
T 1kwa_A           59 ANQTVEQLQKMLREMRGSITFKIVPSYR   86 (88)
T ss_dssp             GGSCHHHHHHHHHHCCEEEEEEEECCCC
T ss_pred             CCCCHHHHHHHHhcCCCcEEEEEECCcC
Confidence            3578999999999987799999987543

>1wfv_A Membrane associated guanylate kinase inverted-2; atrophin-1 interacting protein 1, activin receptor interacting protein 1; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=89.65  E-value=0.38  Score=30.80  Aligned_cols=30  Identities=17%  Similarity=0.309  Sum_probs=25.4

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      +.+++|++++.+|+.+++.|.|+|.|+...
T Consensus        69 v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~   98 (103)
T 1wfv_A           69 TRDMTHARAIELIKSGGRRVRLLLKRGTGS   98 (103)
T ss_dssp             CSSCCHHHHHHHHHHHCSEECEEEECTTCS
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            356789999999999999999999987553

>2eno_A Synaptojanin-2-binding protein; mitochondrial outer membrane protein 25, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.53  E-value=0.44  Score=31.58  Aligned_cols=30  Identities=20%  Similarity=0.282  Sum_probs=26.0

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      +.+++|++++.+|+.+++.|.|+|.|+...
T Consensus        80 v~~~~~~~~~~~~~~~g~~v~l~v~R~~~~  109 (120)
T 2eno_A           80 LKNLLHQDAVDLFRNAGYAVSLRVQHRLQV  109 (120)
T ss_dssp             CCSCCHHHHHHHHHHHCSEEEEEEEEEEEC
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEeCCcC
Confidence            457889999999999999999999987653

>2f5y_A Regulator of G-protein signalling 3 isoform 1; PDZ domain, RGS-3, human, structural genomics, structural GE consortium, SGC, signaling protein; 2.39A {Homo sapiens} SCOP: b.36.1.1

Probab=89.34  E-value=0.54  Score=29.45  Aligned_cols=29  Identities=21%  Similarity=0.190  Sum_probs=23.7

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      .+++|++++++|+.+++.|.|+|.|....
T Consensus        57 ~~~~~~~~~~~l~~~~~~v~l~v~R~~~~   85 (91)
T 2f5y_A           57 EHWKCVELAHEIRSCPSEIILLVWRMVPQ   85 (91)
T ss_dssp             TTCCHHHHHHHHHTCSSEEEEEEEECC--
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence            45689999999999999999999987553

>1um7_A Synapse-associated protein 102; PDZ, discs large homolog 3, DLG3-human presynaptic protein, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=88.94  E-value=0.16  Score=33.21  Aligned_cols=33  Identities=39%  Similarity=0.760  Sum_probs=27.8

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCccCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHE   33 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~~   33 (173)
                      +.+++|++++.+++..++.|.|+|.|++..|..
T Consensus        72 v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~~~  104 (113)
T 1um7_A           72 LRNATHEQAAAALKRAGQSVTIVAQYRPEEYSR  104 (113)
T ss_dssp             CTTCCHHHHHHHHHSCCSEEEEEEECCHHHHHH
T ss_pred             CCCCCHHHHHHHHHhCCCcEEEEEEECcchhhh
Confidence            356789999999999999999999988776543

>2uzc_A Human pdlim5, PDZ and LIM domain 5; metal-binding, enigma homolog, phosphorylation, signaling PR LIM domain, PDZ domain; 1.5A {Homo sapiens}

Probab=88.77  E-value=0.64  Score=28.77  Aligned_cols=27  Identities=22%  Similarity=0.318  Sum_probs=23.7

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSP   28 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~   28 (173)
                      .+.+|++++++++.+++.|.|+|.|+.
T Consensus        60 ~~~~~~~~~~~~~~~g~~v~l~v~R~g   86 (88)
T 2uzc_A           60 QGMTHLEAQNKIKGCTGSLNMTLQRES   86 (88)
T ss_dssp             TTCCHHHHHHHHHTCCSEEEEEEECCC
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEEEeCC
Confidence            567899999999999999999998864

>1uep_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=88.66  E-value=0.33  Score=31.28  Aligned_cols=28  Identities=7%  Similarity=0.138  Sum_probs=24.3

Q ss_pred             CcccHHHHHHHHhhC--CCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQC--GNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~--g~~v~L~V~r~~~   29 (173)
                      .+++|++++++|+.+  ++.|.|+|.|+..
T Consensus        68 ~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~   97 (103)
T 1uep_A           68 AGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             TTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCCCHHHHHHHHHhCCCCCcEEEEEEeCCC
Confidence            467899999999997  8999999998754

>2qkv_A Inactivation-NO-after-potential D protein; PDZ domain, scaffolding protein, membrane, sensory transduction, vision; 1.55A {Drosophila melanogaster} PDB: 2qkt_A 2qku_A

Probab=88.57  E-value=0.64  Score=29.50  Aligned_cols=29  Identities=10%  Similarity=0.298  Sum_probs=24.7

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+++|++++.+++.+++.|.|+|.|...
T Consensus        64 v~~~~~~~~~~~~~~~~~~v~l~v~R~~p   92 (96)
T 2qkv_A           64 LEGLPFQVSYALFKGANGKVSMEVTRPKP   92 (96)
T ss_dssp             CTTCCHHHHHHHHHTCSSEEEEEEECCCC
T ss_pred             CCCCCHHHHHHHHhcCCCcEEEEEEeCCc
Confidence            35678999999999999999999998543

>3hpk_A Protein interacting with PRKCA 1; oxidized, PDZ domain, kinase, protein binding; 2.20A {Rattus norvegicus} PDB: 3hpm_A

Probab=88.45  E-value=0.56  Score=31.33  Aligned_cols=27  Identities=11%  Similarity=0.124  Sum_probs=23.7

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSP   28 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~   28 (173)
                      .+++|++++.+|+++++.|+|+|.|..
T Consensus        79 ~~~~~~~~~~~l~~~~~~v~l~v~r~~  105 (125)
T 3hpk_A           79 KGKTKVEVAKMIQEVKGEVTIHYNKLQ  105 (125)
T ss_dssp             TTCCHHHHHHHHHHSCSEEEEEEEEEC
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEECC
Confidence            467899999999999999999998743

>1rgw_A ZAsp protein; PDZ, cypher, oracle, muscle, Z-DISK, sarcomere, structural protein; NMR {Homo sapiens} SCOP: b.36.1.1 PDB: 1wjl_A

Probab=88.41  E-value=0.59  Score=28.68  Aligned_cols=27  Identities=15%  Similarity=0.171  Sum_probs=23.4

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSP   28 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~   28 (173)
                      .+++|++++.+++.+++.|.|+|.|+.
T Consensus        58 ~~~~~~~~~~~~~~~~~~v~l~v~R~~   84 (85)
T 1rgw_A           58 DTMTHLEAQNKIKSASYNLSLTLQKSK   84 (85)
T ss_dssp             TTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred             CCcCHHHHHHHHHcCCCeEEEEEEeCC
Confidence            567899999999999889999998753

>2q3g_A PDZ and LIM domain protein 7; structural genomics, structural genomics consortium, SGC; 1.11A {Homo sapiens}

Probab=88.21  E-value=0.5  Score=29.38  Aligned_cols=28  Identities=21%  Similarity=0.293  Sum_probs=24.0

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++|++++.+++.+++.|.|+|.|+..
T Consensus        60 ~~~~~~~~~~~~~~~g~~v~l~v~R~~~   87 (89)
T 2q3g_A           60 GSLTHIEAQNKIRACGERLSLGLSRAIT   87 (89)
T ss_dssp             GGCCHHHHHHHHHTCTTEEEEEEEEECC
T ss_pred             CCCCHHHHHHHHHhCCCEEEEEEEeCCC
Confidence            4568999999999999999999988643

>1uew_A Membrane associated guanylate kinase inverted-2 (MAGI-2); atrophin-1 interacting protein 1, PDZ domain, structural genomics; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=88.07  E-value=0.55  Score=30.78  Aligned_cols=28  Identities=11%  Similarity=0.146  Sum_probs=24.6

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++|++++++|+..++.|.|+|.|+..
T Consensus        77 ~~~~~~~~~~~l~~~g~~v~l~v~r~~~  104 (114)
T 1uew_A           77 INMPHADIVKLIKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             TTSCHHHHHHHHHHTTTEEEEEECCCSC
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEeCCc
Confidence            4677999999999999999999998755

>2dmz_A INAD-like protein; PDZ domain, inadl protein, hinadl, PALS1- associated tight junction protein, protein associated to tight junctions, PATJ; NMR {Homo sapiens}

Probab=88.06  E-value=0.53  Score=31.59  Aligned_cols=29  Identities=14%  Similarity=0.210  Sum_probs=25.2

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      .+++|++++++|+.+++.|.|+|.|+...
T Consensus        80 ~~~~~~~~~~~l~~~~~~v~l~v~R~~~~  108 (129)
T 2dmz_A           80 QGFANHDVVEVLRNAGQVVHLTLVRRKTS  108 (129)
T ss_dssp             TTCCHHHHHHHHHHCCSSEEEEEEEESSS
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            56789999999999999999999987653

>2vsp_A PDZ domain-containing protein 1; membrane, cytoplasm, phosphoprotein, transport protein, CAsp; 2.60A {Homo sapiens} PDB: 2eej_A

Probab=87.89  E-value=0.64  Score=29.03  Aligned_cols=28  Identities=18%  Similarity=0.311  Sum_probs=22.6

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .++++++++++|+.+++.|.|+|.|+..
T Consensus        60 ~~~~~~~~~~~l~~~g~~v~l~v~r~~~   87 (91)
T 2vsp_A           60 LDEPYEKVVDRIQSSGKNVTLLVCGKKA   87 (91)
T ss_dssp             TTSCHHHHHHHHTTSCSEEEEEEEC---
T ss_pred             CCCCHHHHHHHHHcCCCEEEEEEEeCCc
Confidence            3568999999999999999999998654

>2v90_A PDZ domain-containing protein 3; membrane, protein-binding; 2.00A {Homo sapiens}

Probab=87.81  E-value=0.77  Score=28.93  Aligned_cols=28  Identities=11%  Similarity=0.114  Sum_probs=24.4

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++|++++++|+..++.|.|+|.|+..
T Consensus        63 ~~~~~~~~~~~l~~~g~~v~l~v~r~~~   90 (96)
T 2v90_A           63 EGLGHEETVSRIQGQGSCVSLTVVDPEA   90 (96)
T ss_dssp             TTCCHHHHHHHHHTTTTEEEEEEECCCT
T ss_pred             CCCCHHHHHHHHHcCCCEEEEEEECCCC
Confidence            4567999999999999999999998755

>1um1_A KIAA1849 protein, RSGI RUH-007; PDZ domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=87.48  E-value=0.77  Score=29.77  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=25.4

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      .+++|++++.+++.+++.|.|+|.|+...
T Consensus        70 ~~~~~~~~~~~~~~~~~~v~l~v~R~~~~   98 (110)
T 1um1_A           70 LGLGYLRAVDLIRHGGKKMRFLVAKSDVE   98 (110)
T ss_dssp             SSCCHHHHHHHHHTCCSEEEEEEECCCHH
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEeCCcc
Confidence            46789999999999999999999987653

>3r68_A Na(+)/H(+) exchange regulatory cofactor NHE-RF3; PDZ domain, adaptor protein, SR-BI, signaling protein; 1.30A {Mus musculus} SCOP: b.36.1.0 PDB: 3r69_A*

Probab=87.24  E-value=0.89  Score=28.48  Aligned_cols=29  Identities=17%  Similarity=0.203  Sum_probs=23.9

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+++|++++++|+.+++.+.+++.|...
T Consensus        61 v~~~~~~~~~~~l~~~~~~~~~~~~r~~~   89 (95)
T 3r68_A           61 VEALDHDGVVEMIRKGGDQTTLLVLDKEL   89 (95)
T ss_dssp             CTTCCHHHHHHHHHTTTTEEEEEEEECC-
T ss_pred             CCCCCHHHHHHHHHhCCCeEEEEEECCcc
Confidence            35678999999999999999998876544

>2la8_A Inactivation-NO-after-potential D protein, KON-TI peptide; peptide binding protein; NMR {Drosophila melanogaster}

Probab=87.04  E-value=0.79  Score=29.81  Aligned_cols=29  Identities=10%  Similarity=0.291  Sum_probs=24.9

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+++|++++.+++.+++.|.|+|.|...
T Consensus        58 v~~~~~~~~~~~~~~~~~~v~l~v~R~~~   86 (106)
T 2la8_A           58 LEGLPFQVCYALFKGANGKVSMEVTRPKP   86 (106)
T ss_dssp             CSSSCHHHHHHHHHSCBSCEEEEEEECCS
T ss_pred             CCCCCHHHHHHHHhCCCCeEEEEEEeCCC
Confidence            35678999999999999999999998644

>1x6d_A Interleukin-16; PDZ domain, lymphocyte chemoattractant factor (LCF), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.2

Probab=86.73  E-value=1.2  Score=29.29  Aligned_cols=30  Identities=20%  Similarity=0.251  Sum_probs=22.5

Q ss_pred             CCcccHHHHHHHHhhCCCeEE-EEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSIT-MLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~-L~V~r~~~~   30 (173)
                      +.+++|++++.+|+.+++.+. |+|.|+...
T Consensus        75 v~~~~~~~~~~~l~~~~~~~~~l~v~R~~~~  105 (119)
T 1x6d_A           75 LKGTTHHDALAILRQAREPRQAVIVTRKLTP  105 (119)
T ss_dssp             CSSCCHHHHHHHHHHTTSSSEEEEEEECCCS
T ss_pred             CCCCCHHHHHHHHHhCCCCeEEEEEEcCCCc
Confidence            356789999999999876654 677776554

>2pa1_A PDZ and LIM domain protein 2; PDZ domain, structural genomics, structural genomics consort metal binding protein; 1.70A {Homo sapiens} PDB: 3pdv_A

Probab=86.06  E-value=1  Score=27.72  Aligned_cols=27  Identities=15%  Similarity=0.117  Sum_probs=23.5

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSP   28 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~   28 (173)
                      .+++|++++++|+.+++.|.|.|.|+.
T Consensus        59 ~~~~~~~~~~~l~~~~~~v~l~v~R~~   85 (87)
T 2pa1_A           59 EGMLHAEAQSKIRQSPSPLRLQLDRIT   85 (87)
T ss_dssp             TTCCHHHHHHHHHTCCSSEEEEEEECC
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEecC
Confidence            456799999999998899999999874

>1vb7_A PDZ and LIM domain 2; PDZ domain PDZ-LIM protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=85.36  E-value=1.1  Score=28.12  Aligned_cols=28  Identities=18%  Similarity=0.196  Sum_probs=24.4

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++|++++.+|+..++.|.|+|.|+..
T Consensus        63 ~~~~~~~~~~~l~~~~~~v~l~v~R~g~   90 (94)
T 1vb7_A           63 ENMLHAEAQSKIRQSASPLRLQLDRSSG   90 (94)
T ss_dssp             TTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred             CCCCHHHHHHHHHhCCCcEEEEEEECCc
Confidence            4678999999999988999999998754

>2pkt_A PDZ and LIM domain protein 1; PDZ domain, structural genomics, structural genomics consort unknown function; HET: PG4; 1.50A {Homo sapiens} PDB: 2v1w_A*

Probab=85.33  E-value=1.3  Score=27.53  Aligned_cols=28  Identities=21%  Similarity=0.303  Sum_probs=24.6

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+.+|.+++.+|+.+++.|.|.|.|+..
T Consensus        60 ~~~~~~~~~~~l~~~g~~v~l~v~R~g~   87 (91)
T 2pkt_A           60 SNMTHLEAQNRIKGCTDNLTLTVARSEH   87 (91)
T ss_dssp             TTCCHHHHHHHHHTCSSEEEEEEEEECC
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEECCc
Confidence            5678999999999999999999998754

>3ngh_A PDZ domain-containing protein 1; adaptor protein, SR-BI, signaling protein; 1.80A {Mus musculus} SCOP: b.36.1.0

Probab=85.21  E-value=1  Score=28.88  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=24.7

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+.+|++++.+|+++++.|.|+|.|+..
T Consensus        59 ~~~~~~~~~~~l~~~g~~v~l~v~r~~~   86 (106)
T 3ngh_A           59 DKEEHAQVVELVRKSGNSVTLLVLDGDS   86 (106)
T ss_dssp             TTSCHHHHHHHHHHTTTEEEEEEECHHH
T ss_pred             CCCCHHHHHHHHHhCCCEEEEEEEECCe
Confidence            5678999999999999999999998655

>1v5q_A GRIP1 homolog, glutamate receptor interacting protein 1A-L homolog; PDZ domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=84.49  E-value=1.6  Score=28.85  Aligned_cols=29  Identities=17%  Similarity=0.430  Sum_probs=24.3

Q ss_pred             CcccHHHHHHHHhhC--CCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQC--GNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~~--g~~v~L~V~r~~~~   30 (173)
                      .++++++++++|+..  ++.|.|+|.|+...
T Consensus        79 ~~~~~~~~~~~l~~~~~g~~v~l~v~R~~~~  109 (122)
T 1v5q_A           79 EDSTFEEANQLLRDSSITSKVTLEIEFDVAE  109 (122)
T ss_dssp             SSSCHHHHHHHHHHHTTTTCEEEEEEEECCC
T ss_pred             CCCCHHHHHHHHHhCCCCCeEEEEEEECCcc
Confidence            457799999999986  78999999987653

>3bpu_A Membrane-associated guanylate kinase, WW and PDZ containing protein 1; structural genomi consortium, SGC, ATP-binding, cell junction; 1.60A {Homo sapiens}

Probab=84.45  E-value=1.4  Score=27.23  Aligned_cols=27  Identities=26%  Similarity=0.356  Sum_probs=22.6

Q ss_pred             CcccHHHHHHHHhh--CCCeEEEEEEeCC
Q psy7774           2 RSATYQLAASVLRQ--CGNSITMLVQYSP   28 (173)
Q Consensus         2 ~~~th~~av~~L~~--~g~~v~L~V~r~~   28 (173)
                      .+.+|++++++|++  .++.|.|+|.|+.
T Consensus        58 ~~~~~~~~~~~l~~~~~g~~v~l~v~R~g   86 (88)
T 3bpu_A           58 QALTHNQVVDMLVESPKGSEVTLLVQRQT   86 (88)
T ss_dssp             TTSCHHHHHHHHHTSCTTCEEEEEEEEEC
T ss_pred             CCCCHHHHHHHHHhCCCCCEEEEEEEeCC
Confidence            46779999999986  5889999998864

>2edz_A PDZ domain-containing protein 1; CFTR-associated protein of 70 kDa, Na/PI cotransporter C- terminal-associated protein, NAPI-CAP1; NMR {Mus musculus}

Probab=84.35  E-value=0.96  Score=29.58  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=24.6

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+.+|++++++|+..++.|.|+|.|+..
T Consensus        71 ~~~~~~~~~~~l~~~g~~v~l~v~R~~~   98 (114)
T 2edz_A           71 DKEEHAQVVELVRKSGNSVTLLVLDGDS   98 (114)
T ss_dssp             SSSCHHHHHHHHHHTCSEEEEEEECHHH
T ss_pred             CCCCHHHHHHHHHcCCCEEEEEEEECCc
Confidence            4678999999999999999999998655

>2cs5_A Tyrosine-protein phosphatase, non-receptor type 4; PDZ domain, ptpase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.36.1.1

Probab=84.13  E-value=0.93  Score=29.85  Aligned_cols=29  Identities=10%  Similarity=0.142  Sum_probs=24.1

Q ss_pred             CCcccHHHHHHHHhhCC----CeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCG----NSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g----~~v~L~V~r~~~   29 (173)
                      +.+++|++++.+|+.++    ..|.|+|.|+..
T Consensus        75 v~~~~~~~~~~~~~~~~~~~~~~v~l~v~R~~~  107 (119)
T 2cs5_A           75 IAEHTHDQVVLFIKASCERHSGELMLLVRPNAV  107 (119)
T ss_dssp             TTSSCHHHHHHHHHHHHHCCSSCEEEEEECCCC
T ss_pred             CCCCCHHHHHHHHHhccccCCCEEEEEEEcccc
Confidence            35679999999999985    489999998754

>2qbw_A PDZ-fibronectin fusion protein; fibronectin PDZ, unknown function; 1.80A {Homo sapiens} PDB: 3ch8_A

Probab=83.91  E-value=1.4  Score=31.51  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=23.8

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEe
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQY   26 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r   26 (173)
                      +.+++|++++.+|+.+++.|.|+|.|
T Consensus        55 v~~~~~~~~~~~~~~~~~~v~l~v~r   80 (195)
T 2qbw_A           55 FINIEHGQAVSLLKTFQNTVELIIVR   80 (195)
T ss_dssp             CTTCCHHHHHHHHHHCCSEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEE
Confidence            45788999999999999999999998

>1tp5_A Presynaptic density protein 95; PDZ-peptide ligand complex, peptide binding protein; 1.54A {Rattus norvegicus} SCOP: b.36.1.1 PDB: 1tp3_A 1tq3_A 1be9_A 1bfe_A

Probab=83.72  E-value=0.91  Score=29.88  Aligned_cols=32  Identities=34%  Similarity=0.736  Sum_probs=27.1

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCccC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYH   32 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~   32 (173)
                      +.+++|.+++.+++.+++.|.|+|.|.+..+.
T Consensus        71 v~~~~~~~~~~~~~~~~~~v~l~v~r~~~~~~  102 (119)
T 1tp5_A           71 LRNASHEQAAIALKNAGQTVTIIAQYKPEEYS  102 (119)
T ss_dssp             CTTCCHHHHHHHHHTSCSEEEEEEEECHHHHH
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEECCchhc
Confidence            35678999999999999999999998877654

>1wf7_A Enigma homologue protein; PDZ domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: b.36.1.1

Probab=83.52  E-value=1.5  Score=27.96  Aligned_cols=29  Identities=21%  Similarity=0.307  Sum_probs=24.8

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      .+++|.+++.+++.+++.|.|+|.|+...
T Consensus        62 ~~~~~~~~~~~~~~~g~~v~l~v~R~g~~   90 (103)
T 1wf7_A           62 QGMTHLEAQNKIKACTGSLNMTLQRASAA   90 (103)
T ss_dssp             SSCCHHHHHHHHHHCSSEEEEEECCCSCC
T ss_pred             CCCCHHHHHHHHHcCCCeEEEEEEeCCCc
Confidence            56789999999999999999999887553

>2d90_A PDZ domain containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=83.28  E-value=1.4  Score=28.10  Aligned_cols=28  Identities=18%  Similarity=0.235  Sum_probs=23.8

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++|++++++|+.+++.|.|+|.|...
T Consensus        63 ~~~~~~~~~~~l~~~g~~v~l~v~r~~~   90 (102)
T 2d90_A           63 EALDHDGVVEMIRKGGDQTTLLVLDKEA   90 (102)
T ss_dssp             TTSCHHHHHHHHHHSTTEEEEEECSTTC
T ss_pred             CCCCHHHHHHHHHcCCCEEEEEEEECCC
Confidence            4567899999999999999999987544

>1v5l_A PDZ and LIM domain 3; actinin alpha 2 associated LIM protein; PDZ domain, cytoskeleton, actin binding, structural genomics; NMR {Mus musculus} SCOP: b.36.1.1

Probab=83.25  E-value=1.4  Score=28.24  Aligned_cols=29  Identities=10%  Similarity=0.142  Sum_probs=25.0

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      .++++++++++|+..++.|.|.|.|+...
T Consensus        62 ~~~~~~~~~~~l~~~g~~v~l~v~R~g~~   90 (103)
T 1v5l_A           62 ESMTHADAQDRIKAASYQLCLKIDRAETR   90 (103)
T ss_dssp             SSCCHHHHHHHHTTCCSEEECEECCCTTT
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEEEECCeE
Confidence            45679999999999999999999987664

>2eei_A PDZ domain-containing protein 1; regulatory factor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.95  E-value=1.2  Score=28.65  Aligned_cols=28  Identities=11%  Similarity=0.226  Sum_probs=24.2

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++|++++.+++.+++.+.|+|.|...
T Consensus        65 ~~~~~~~~~~~~~~~~~~v~l~v~r~~~   92 (106)
T 2eei_A           65 EDASHEEVVEKVKKSGSRVMFLLVDKET   92 (106)
T ss_dssp             TTCCHHHHHHHHHHHCSEEEEEECCTTT
T ss_pred             CCCCHHHHHHHHHhCCCeEEEEEEcCch
Confidence            4678999999999999999999987654

>2rcz_A Tight junction protein ZO-1; PDZ, domain-swapping, cell junction, membrane, phosphorylati domain, protein binding; 1.70A {Homo sapiens} PDB: 2jwe_A 2osg_A

Probab=82.58  E-value=1.8  Score=25.95  Aligned_cols=26  Identities=15%  Similarity=0.276  Sum_probs=21.7

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYS   27 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~   27 (173)
                      .+++++++..+|+..++.|.|.|.|+
T Consensus        55 ~~~~~~~~~~~l~~~~~~v~l~v~R~   80 (81)
T 2rcz_A           55 ENMSLTDAKTLIERSKGKLKMVVQRD   80 (81)
T ss_dssp             TTCCHHHHHHHHHTSTTEEEEEEEC-
T ss_pred             CCCCHHHHHHHHHCCCCeEEEEEEeC
Confidence            35689999999999888999999874

>1wif_A RSGI RUH-020, riken cDNA 4930408O21; PDZ domain, structural genomics, mouse cDNA, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.36.1.1

Probab=82.32  E-value=1.6  Score=29.51  Aligned_cols=25  Identities=12%  Similarity=0.125  Sum_probs=22.4

Q ss_pred             cccHHHHHHHHhh--CCCeEEEEEEeC
Q psy7774           3 SATYQLAASVLRQ--CGNSITMLVQYS   27 (173)
Q Consensus         3 ~~th~~av~~L~~--~g~~v~L~V~r~   27 (173)
                      +.+|++++++|+.  .|..|+|+|.|+
T Consensus        84 ~~s~~d~~~~l~~~~~G~~v~l~V~R~  110 (126)
T 1wif_A           84 GYTLREFLKLLQNITIGTVLQIKAYRG  110 (126)
T ss_dssp             TCCHHHHHHHHTSCCSSCEEEEEEESS
T ss_pred             CCCHHHHHHHHhcCCCCCEEEEEEEEC
Confidence            4689999999998  588999999997

>2dls_A PDZ-rhogef, RHO guanine nucleotide exchange factor 11; PDZ domain, arhgef11, KIAA0380, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2omj_A 2os6_A

Probab=82.11  E-value=2  Score=26.88  Aligned_cols=27  Identities=7%  Similarity=0.166  Sum_probs=22.8

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++|.+++..++ .++.|.|+|.|+..
T Consensus        62 ~~~~~~~~~~~~~-~g~~v~l~v~R~~~   88 (93)
T 2dls_A           62 TNSSHLEVVKLIK-SGAYVALTLLGSSS   88 (93)
T ss_dssp             SSSCHHHHHHHHT-SSSEEEEEEECCCC
T ss_pred             CCCCHHHHHHhhc-CCCEEEEEEEECCC
Confidence            5677889999998 59999999998754

>1g9o_A NHE-RF; PDZ domain, complex, signaling protein; 1.50A {Homo sapiens} SCOP: b.36.1.1 PDB: 1i92_A 1gq4_A 1gq5_A 2ocs_A

Probab=81.59  E-value=2.6  Score=26.06  Aligned_cols=26  Identities=27%  Similarity=0.256  Sum_probs=21.3

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYS   27 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~   27 (173)
                      .+++|++++++|+++++.+.+++.+.
T Consensus        60 ~~~~~~~~~~~l~~~~~~~~~~~~~r   85 (91)
T 1g9o_A           60 EKETHQQVVSRIRAALNAVRLLVVDP   85 (91)
T ss_dssp             TTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred             CCCCHHHHHHHHHcCCCcEEEEEEcC
Confidence            56789999999999888888877643

>3cyy_A Tight junction protein ZO-1; protein-ligand complex, cell junction, membrane, phosphoprot domain, tight junction, transmembrane; 2.40A {Homo sapiens}

Probab=80.21  E-value=2.3  Score=26.28  Aligned_cols=28  Identities=14%  Similarity=0.247  Sum_probs=22.2

Q ss_pred             CcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           2 RSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         2 ~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      .+++++++..+|+.+++.|.|.|.|+..
T Consensus        57 ~~~~~~~~~~~l~~~~~~v~l~v~r~g~   84 (92)
T 3cyy_A           57 ENMSLTDAKTLIERSKGKLKMVVQRDER   84 (92)
T ss_dssp             TTCCHHHHHHHHHTTTTEEEEEEEC---
T ss_pred             CCCCHHHHHHHHHcCCCcEEEEEEeCCc
Confidence            3568999999999988899999988654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1g9oa_	91	b.36.1.1 (A:) Na+/H+ exchanger regulatory factor,	4e-15
d1uita_	117	b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Huma	1e-14
d2fcfa1	96	b.36.1.1 (A:1148-1243) Multiple PDZ domain protein	1e-13
d2f5ya1	77	b.36.1.1 (A:19-95) Regulator of G-protein signalin	2e-13
d1x5na1	101	b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens)	6e-13
d1x5qa1	97	b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Hom	8e-13
d1t2ma1	92	b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [Ta	9e-13
d1wi4a1	96	b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mou	9e-13
d1m5za_	91	b.36.1.1 (A:) Glutamate receptor interacting prote	1e-12
d1q3oa_	104	b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norv	2e-12
d1qava_	90	b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [Ta	4e-12
d2csja1	104	b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tj	6e-12
d1ueza_	101	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	6e-12
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	1e-11
d1tp5a1	102	b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat	6e-06
d1w9ea1	85	b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapie	1e-11
d1wi2a_	104	b.36.1.1 (A:) PDZ domain containing protein 11, Pd	1e-11
d1kwaa_	88	b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [Ta	3e-11
d2cs5a1	106	b.36.1.1 (A:8-113) Tyrosine-protein phosphatase no	3e-11
d1p1da2	99	b.36.1.1 (A:115-213) Glutamate receptor interactin	6e-11
d1uf1a_	128	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	1e-10
d2h3la1	103	b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens)	2e-10
d1n7ea_	95	b.36.1.1 (A:) Glutamate receptor-interacting prote	2e-10
d1y7na1	79	b.36.1.1 (A:12-90) Amyloid beta A4 precursor prote	3e-10
d1rgwa_	85	b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo	3e-10
d2fnea1	88	b.36.1.1 (A:1955-2042) Multiple PDZ domain protein	5e-10
d2cssa1	108	b.36.1.1 (A:8-115) Regulating synaptic membrane ex	8e-10
d1ujda_	117	b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human	9e-10
d2fe5a1	92	b.36.1.1 (A:223-314) Synapse-associated protein 10	1e-09
d1rgra_	93	b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus	2e-09
d2z9ia1	88	b.36.1.4 (A:227-314) Protease PepD {Mycobacterium	2e-09
d1ihja_	94	b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanoga	2e-09
d1x5ra1	99	b.36.1.1 (A:8-106) Glutamate receptor interacting	2e-09
d1v6ba_	118	b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxI	2e-09
d1vb7a_	94	b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus	2e-09
d1wf8a1	94	b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens	3e-09
d2i6va1	87	b.36.1.5 (A:219-305) General secretion pathway pro	6e-09
d1x6da1	107	b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sap	6e-09
d1x45a1	85	b.36.1.1 (A:8-92) Amyloid beta A4 precursor protei	6e-09
d1ufxa_	103	b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapien	8e-09
d1r6ja_	82	b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [Ta	1e-08
d1v62a_	117	b.36.1.1 (A:) Glutamate receptor interacting prote	2e-08
d1ueqa_	123	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-08
d1va8a1	100	b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {M	2e-08
d2f0aa1	92	b.36.1.1 (A:251-342) Segment polarity protein dish	4e-08
d1whaa_	105	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	5e-08
d1um1a_	110	b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human	6e-08
d1rzxa_	98	b.36.1.1 (A:) GTPase-binding domain of the cell po	7e-08
d1wfva_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	1e-07
d1ozia_	99	b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus muscu	2e-07
d1v5la_	103	b.36.1.1 (A:) Alpha-actinin-2 associated LIM prote	2e-07
d1uepa_	103	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-07
d1ky9b2	88	b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-t	3e-07
d1uhpa_	107	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	3e-07
d1wg6a_	127	b.36.1.1 (A:) Partitioning-defective 3-like protei	7e-07
d1i16a_	130	b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens)	7e-07
d1ujua_	111	b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sap	2e-06
d1ujva_	96	b.36.1.1 (A:) Membrane associated guanylate kinase	2e-06
d1v5qa_	122	b.36.1.1 (A:) Glutamate receptor interacting prote	3e-06
d1wf7a_	103	b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus muscu	4e-06
d1wh1a_	124	b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human	4e-06
d1qaua_	112	b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS	4e-06
d1uewa_	114	b.36.1.1 (A:) Membrane associated guanylate kinase	6e-06
d1wifa_	126	b.36.1.1 (A:) hypothetical PDZ domain containing p	8e-06
d1vaea_	111	b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [T	1e-05
d1lcya1	100	b.36.1.4 (A:226-325) Mitochondrial serine protease	3e-05
d1fc6a3	92	b.36.1.3 (A:157-248) Photosystem II D1 C-terminal	2e-04
d2hgaa1	103	b.36.1.6 (A:23-125) Uncharacterized protein MTH136	0.001

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 65.2 bits (159), Expect = 4e-15
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)

Query: 89  EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRA 147
            PR   +E +  +  G  L G    +G Y+  V+ GS    AGL  GDR++E NG ++  
Sbjct: 3   LPRLCCLE-KGPNGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEK 61

Query: 148 ATAEEAAYELAKPADKVTVL 167
            T ++    +    + V +L
Sbjct: 62  ETHQQVVSRIRAALNAVRLL 81

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.6 bits (157), Expect = 1e-14
 Identities = 33/81 (40%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
             EPR + ++ +    LGIS+V G   GIYV  V  GS+ + AGL  GD++LE+NG +LR
Sbjct: 17  VEEPRHVKVQ-KGSEPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLR 75

Query: 147 AATAEEAAYELAKPADKVTVL 167
           +AT ++A   + +  D +T+L
Sbjct: 76  SATEQQARLIIGQQCDTITIL 96

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.1 bits (148), Expect = 1e-13
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 12/91 (13%)

Query: 89  EPRFLMIETRKCSNLGISLVGGNAV-----------GIYVHSVQSGSLGYSAG-LRTGDR 136
           +PR + +      +LGIS+VGG  +           GI++  V   S     G L+ GDR
Sbjct: 1   QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDR 60

Query: 137 ILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           I+E +G DLR A+ E+A   + K  + V  +
Sbjct: 61  IVEVDGMDLRDASHEQAVEAIRKAGNPVVFM 91

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]} Length = 77

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.2 bits (146), Expect = 2e-13
 Identities = 16/71 (22%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 97  TRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYE 156
            R     G ++   +   + V +V SG     AGL+  D +L+ N   +      E A+E
Sbjct: 4   PRGKDGFGFTICCDS--PVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHE 61

Query: 157 LAKPADKVTVL 167
           +     ++ +L
Sbjct: 62  IRSCPSEIILL 72

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (144), Expect = 6e-13
 Identities = 25/84 (29%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 86  RSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
           R  + + + I       LG S+  G     GI++  V+ GSL    GL  GD+I+E NG 
Sbjct: 5   RENKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGV 64

Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
           D      +EA   + K +  +T+ 
Sbjct: 65  DFSNLDHKEAV-NVLKSSRSLTIS 87

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.2 bits (143), Expect = 8e-13
 Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 9/88 (10%)

Query: 89  EPRFLMIETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTGDRILE 139
           E   L +   + +  LGIS+ GG        +  GI++  V        AG+R GD++LE
Sbjct: 6   EEEELTLTILRQTGGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLE 65

Query: 140 YNGTDLRAATAEEAAYELAKPADKVTVL 167
            NG  L+ A   EA   L      V + 
Sbjct: 66  VNGVALQGAEHHEAVEALRGAGTAVQMR 93

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (142), Expect = 9e-13
 Identities = 25/85 (29%), Positives = 42/85 (49%), Gaps = 6/85 (7%)

Query: 89  EPRFLMIETRKCSNLGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
           EP  + +  +K + +G+S+V       + +GIYV SV  G      G L  GD++L  +G
Sbjct: 2   EPEIITVTLKKQNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDG 61

Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
             L   + E AA  + + +  VT+ 
Sbjct: 62  RSLVGLSQERAAELMTRTSSVVTLE 86

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 58.8 bits (142), Expect = 9e-13
 Identities = 21/71 (29%), Positives = 35/71 (49%), Gaps = 5/71 (7%)

Query: 89  EPRFLMIETRKCSNLGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
           +P F +I   K + LG+ ++GG        +Y+H V  G   Y  G L+ GD+++  N  
Sbjct: 6   DPAFRVITVTKETGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKE 65

Query: 144 DLRAATAEEAA 154
            +   + EEA 
Sbjct: 66  SMIGVSFEEAK 76

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.8 bits (142), Expect = 1e-12
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 89  EPRFLMIETRKCSN-LGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
           E   + +         G S+  G    G+YV +++    G   GL+  DR+L+ N    R
Sbjct: 6   ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTR 65

Query: 147 AATAEEAAYELAKPADKVTVL 167
                     +A+  +K+ ++
Sbjct: 66  DFDCCLVVPLIAESGNKLDLV 86

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.5 bits (141), Expect = 2e-12
 Identities = 17/93 (18%), Positives = 36/93 (38%), Gaps = 14/93 (15%)

Query: 89  EPRFLMIETRKCSNLGISLVGG--------------NAVGIYVHSVQSGSLGYSAGLRTG 134
           + + ++++ +     G  L G                    Y+ SV  G + + AGLR G
Sbjct: 5   KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMG 64

Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           D ++E NG ++      +    + +  + + V 
Sbjct: 65  DFLIEVNGQNVVKVGHRQVVNMIRQGGNTLMVK 97

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]} Length = 90

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (138), Expect = 4e-12
 Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGT 143
           S + R + +       LGIS+ GG  N + I +  +  G        L  GD IL  NG 
Sbjct: 2   SLQRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGE 61

Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
           DL +AT +EA   L K   +V + 
Sbjct: 62  DLSSATHDEAVQALKKTGKEVVLE 85

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.2 bits (138), Expect = 6e-12
 Identities = 18/92 (19%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG--------NAVGIYVHSVQSGSLGYSAGLRTGD 135
           +E   E   + ++       GI++ GG            I +  V  G       L+  D
Sbjct: 2   EEVIWEQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPA-DGLLQEND 60

Query: 136 RILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           R++  NGT +       A  +L K      ++
Sbjct: 61  RVVMVNGTPMEDVLHSFAVQQLRKSGKIAAIV 92

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.8 bits (137), Expect = 6e-12
 Identities = 33/84 (39%), Positives = 43/84 (51%), Gaps = 4/84 (4%)

Query: 87  SGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
           SGE R + +   K    LG S+ GG  + VGIYV  V+ GSL    GLR GD+IL  N  
Sbjct: 6   SGEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDK 65

Query: 144 DLRAATAEEAAYELAKPADKVTVL 167
            L   T  EA  +  K + K+ + 
Sbjct: 66  SLARVTHAEAV-KALKGSKKLVLS 88

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.1 bits (135), Expect = 1e-11
 Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
           ++   EPR ++I  R  + LG ++VGG +  GI++  + +G     +G LR GD+IL  N
Sbjct: 4   EDIPREPRRIVIH-RGSTGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVN 62

Query: 142 GTDLRAATAEEAAYELAKPADKVTVL 167
           G DLR A+ E+AA  L      VT++
Sbjct: 63  GVDLRNASHEQAAIALKNAGQTVTII 88

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 102

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.0 bits (96), Expect = 6e-06
 Identities = 12/37 (32%), Positives = 25/37 (67%)

Query: 1   MRSATYQLAASVLRQCGNSITMLVQYSPDKYHELEGS 37
           +R+A+++ AA  L+  G ++T++ QY P++Y   E +
Sbjct: 66  LRNASHEQAAIALKNAGQTVTIIAQYKPEEYSRFEAN 102

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (134), Expect = 1e-11
 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 2/80 (2%)

Query: 89  EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAA 148
           +PR +++   +   +G+ L   +  GI+V  VQ+ S     GLR GD++L+ NG +    
Sbjct: 2   DPREVILCKDQDGKIGLRLKSIDN-GIFVQLVQANSPASLVGLRFGDQVLQINGENCAGW 60

Query: 149 TAEEAAYEL-AKPADKVTVL 167
           ++++A   L     +K+T+ 
Sbjct: 61  SSDKAHKVLKQAFGEKITMT 80

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]} Length = 104

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.1 bits (135), Expect = 1e-11
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)

Query: 89  EPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
            PR + ++    + LG ++ GG  + +GI++  V   S  + AGL+ GD++L  N  D +
Sbjct: 15  LPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQ 74

Query: 147 AATAEEAAYELAKPADKVTVL 167
                +A  E+ K A ++++ 
Sbjct: 75  DIEHSKAV-EILKTAREISMR 94

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.8 bits (132), Expect = 3e-11
 Identities = 17/79 (21%), Positives = 28/79 (35%), Gaps = 1/79 (1%)

Query: 90  PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLR-TGDRILEYNGTDLRAA 148
            R +  +      +GI+L         V  +  G + +  G    GD I E NG  +   
Sbjct: 2   SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQ 61

Query: 149 TAEEAAYELAKPADKVTVL 167
           T E+    L +    +T  
Sbjct: 62  TVEQLQKMLREMRGSITFK 80

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (132), Expect = 3e-11
 Identities = 15/84 (17%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 89  EPRFLMIETRKCSN--LGISLVGG--NAVGIYVHSVQSGSLGYSA--GLRTGDRILEYNG 142
               ++I  +   N   G ++ GG    + + V  V  G+        L  GD+++  NG
Sbjct: 6   HDNLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLING 65

Query: 143 TDLRAATAEEAAYELAKPADKVTV 166
            D+   T ++    +    ++ + 
Sbjct: 66  RDIAEHTHDQVVLFIKASCERHSG 89

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.1 bits (130), Expect = 6e-11
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 5/92 (5%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
           S     + +  +    LGI++           + +  ++ GS+ +  G L  GD++L  +
Sbjct: 8   SSGTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAID 67

Query: 142 GTDLRAATAEEAAYELAKPADKVTVLAHSDTN 173
              L + + E+A   L +  D V +    D +
Sbjct: 68  NIRLDSCSMEDAVQILQQCEDLVKLKIRKDED 99

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 128

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.2 bits (130), Expect = 1e-10
 Identities = 26/96 (27%), Positives = 45/96 (46%), Gaps = 3/96 (3%)

Query: 74  STLTRTHVCKDERSGEPRFLMIETRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAGL 131
           S+  R       + G+ + + +      +LG+++ GG    +GIY+  V  GS    +GL
Sbjct: 5   SSGDRRSTLHLLQGGDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGL 64

Query: 132 RTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           + GD+ILE NG        +EA   L K +  + + 
Sbjct: 65  KVGDQILEVNGRSFLNILHDEAV-RLLKSSRHLILT 99

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (127), Expect = 2e-10
 Identities = 20/89 (22%), Positives = 34/89 (38%), Gaps = 11/89 (12%)

Query: 89  EPRFLMIETRKCSNLGISLVGG----------NAVGIYVHSVQSGSLGYSAGLRTGDRIL 138
             + + +   K   LG S+ GG          +  GI+V  VQ         L+ GD+I+
Sbjct: 9   AKQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKII 67

Query: 139 EYNGTDLRAATAEEAAYELAKPADKVTVL 167
           + NG         +A   L    + V ++
Sbjct: 68  QANGYSFINIEHGQAVSLLKTFQNTVELI 96

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 95

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 52.6 bits (126), Expect = 2e-10
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 3/74 (4%)

Query: 97  TRKCSNLGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEA 153
            R    LGI++ G       I + S+  G L    G +  GDRIL  N + L+     EA
Sbjct: 10  KRYGGPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEA 69

Query: 154 AYELAKPADKVTVL 167
            + L    + VT+ 
Sbjct: 70  IHLLQMAGETVTLK 83

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (125), Expect = 3e-10
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPAD 162
           LG S+  G      + S+  G +    G+R G RI+E NG  + A   E+  + L+    
Sbjct: 15  LGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVG 69

Query: 163 KVTV 166
           ++ +
Sbjct: 70  EIHM 73

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (125), Expect = 3e-10
 Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP 160
            G  L GG    + + +  +  GS    + L  GD ++  +G +    T  EA  ++   
Sbjct: 13  WGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSA 72

Query: 161 ADKVTVL 167
           +  +++ 
Sbjct: 73  SYNLSLT 79

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (123), Expect = 5e-10
 Identities = 26/85 (30%), Positives = 39/85 (45%), Gaps = 7/85 (8%)

Query: 90  PRFLMIETRKCSN-LGISLVGG-----NAVGIYVHSVQSGSLGYSAGL-RTGDRILEYNG 142
           P+   I   +  + LG S+VGG       + IYV +V +       G  + GD+I+  NG
Sbjct: 1   PQCKSITLERGPDGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNG 60

Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
             L   T EEA   L +    VT++
Sbjct: 61  QSLEGVTHEEAVAILKRTKGTVTLM 85

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 8e-10
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 6/82 (7%)

Query: 91  RFLMIETRKCSNLGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 144
           +   +     + LG+ +VGG       +G ++  V+ GSL    G LR GD +LE+NG  
Sbjct: 20  KRTTMPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKP 79

Query: 145 LRAATAEEAAYELAKPADKVTV 166
           L  AT EE    + +   +  V
Sbjct: 80  LPGATNEEVYNIILESKSEPQV 101

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (123), Expect = 9e-10
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 8/73 (10%)

Query: 103 LGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 154
           LGI +VGG         +G Y+  +  G      G L  G ++LE+NG  L + T EE  
Sbjct: 32  LGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQ 91

Query: 155 YELAKPADKVTVL 167
             +++ + +  + 
Sbjct: 92  SIISQQSGEAEIC 104

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (120), Expect = 1e-09
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 8/79 (10%)

Query: 97  TRKCSNLGISLVGG-------NAVGIYVHSVQSGSLGYSAGL-RTGDRILEYNGTDLRAA 148
            +    LG S+ GG           IY+  +  G      G  + GDR+L  N T+L+  
Sbjct: 8   LKGPKGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDV 67

Query: 149 TAEEAAYELAKPADKVTVL 167
             EEA   L   +D V + 
Sbjct: 68  RHEEAVASLKNTSDMVYLK 86

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 93

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.3 bits (120), Expect = 2e-09
 Identities = 22/79 (27%), Positives = 30/79 (37%), Gaps = 8/79 (10%)

Query: 97  TRKCSNLGISLVGG-------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAA 148
            R  S LG S+ GG       +   I++  +  G      G LR  D IL  N  D+R  
Sbjct: 8   ERGNSGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREV 67

Query: 149 TAEEAAYELAKPADKVTVL 167
           T   A   L +    V + 
Sbjct: 68  THSAAVEALKEAGSIVRLY 86

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 49.9 bits (119), Expect = 2e-09
 Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 1/65 (1%)

Query: 103 LGISLVGG-NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPA 161
           LG+ +    + +G  +  V +G    +AG+  G  + + +   + +A A  AA     P 
Sbjct: 5   LGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPG 64

Query: 162 DKVTV 166
             V +
Sbjct: 65  ATVAL 69

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 50.3 bits (120), Expect = 2e-09
 Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 9/74 (12%)

Query: 103 LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEA 153
            GI +V G           GI++  +   S  +  G L+ GDRIL  NG D+R +T +  
Sbjct: 17  FGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAV 76

Query: 154 AYELAKPADKVTVL 167
              + +   K+ + 
Sbjct: 77  IDLIKEADFKIELE 90

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (119), Expect = 2e-09
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 7/86 (8%)

Query: 89  EPRFLMIETRKCSNLGISLVG------GNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYN 141
           E   +++     S  G+ L G        +    V  ++  S     G L+ GDR+L  N
Sbjct: 8   ETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSIN 67

Query: 142 GTDLRAATAEEAAYELAKPADKVTVL 167
           G      T EEA   L   A    V+
Sbjct: 68  GIATEDGTMEEANQLLRDAALAHKVV 93

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]} Length = 118

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.4 bits (120), Expect = 2e-09
 Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 85  ERSGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
           E+       ++  +K  +L ++L GG       + V +V  G      G +  GD I+  
Sbjct: 12  EQIAGKDVRLLRIKKEGSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAI 71

Query: 141 NGTDLRAATAEEAA 154
           NG  +   T  EA 
Sbjct: 72  NGKIVTDYTLAEAE 85

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.9 bits (119), Expect = 2e-09
 Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 2/77 (2%)

Query: 93  LMIETRKCSNLGISLVGGNAV--GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATA 150
           L ++    +  G  + GG      I V  V       +A LR GD I+  NG        
Sbjct: 8   LTVDVAGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLH 67

Query: 151 EEAAYELAKPADKVTVL 167
            EA  ++ + A  + + 
Sbjct: 68  AEAQSKIRQSASPLRLQ 84

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.5 bits (118), Expect = 3e-09
 Identities = 23/83 (27%), Positives = 36/83 (43%), Gaps = 10/83 (12%)

Query: 95  IETRKCSN-LGISLVGG--------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTD 144
           +E  K  + LGIS++G           +GI+V +V  G      G ++  D+I+E +G  
Sbjct: 6   VELEKDEDGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGIS 65

Query: 145 LRAATAEEAAYELAKPADKVTVL 167
           L   T   AA  L      V  +
Sbjct: 66  LVGVTQNFAATVLRNTKGNVRFV 88

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]} Length = 87

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

 Score = 48.4 bits (115), Expect = 6e-09
 Identities = 14/66 (21%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 103 LGISLV--GGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP 160
           + +S V      +G  V   +   L  S GL+ GD  +  NG DL         ++    
Sbjct: 7   VRLSQVKRDDKVLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNE 66

Query: 161 ADKVTV 166
             ++++
Sbjct: 67  MTEMSL 72

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 6e-09
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 4/87 (4%)

Query: 85  ERSGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
           ++       ++   + + LG SL GG       I VH V    L    G ++ G+ +L  
Sbjct: 4   KQLDGIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSI 63

Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
           NG  L+  T  +A   L +  +    +
Sbjct: 64  NGKSLKGTTHHDALAILRQAREPRQAV 90

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (116), Expect = 6e-09
 Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%)

Query: 95  IETRKCSNLGISLVGGNA----VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAAT 149
           IE +K   LG+ +V          + + ++  G     +G L  GD+I+  NGT L    
Sbjct: 4   IEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLP 63

Query: 150 AEEAAYELAKPADKVTV 166
                  +    ++  V
Sbjct: 64  LSTCQSIIKGLKNQSRV 80

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 8e-09
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 4/83 (4%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
           SG    L+   +  + LGI++ GG         + ++Q G   ++ G L+ G  ILE NG
Sbjct: 3   SGSSGTLVRVKKSAATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNG 62

Query: 143 TDLRAATAEEAAYELAKPADKVT 165
             LR     EAA  +A+      
Sbjct: 63  LTLRGKEHREAARIIAEAFKTKD 85

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 82

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.7 bits (113), Expect = 1e-08
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLR 146
           + +PR + +      ++G            + S+   S     GL T   I E NG ++ 
Sbjct: 2   AMDPRTITMHKDSTGHVGFIFKN-----GKITSIVKDSSAARNGLLTEHNICEINGQNVI 56

Query: 147 AATAEEAAYELAKPADKVTVL 167
                + A  L+     VT+ 
Sbjct: 57  GLKDSQIADILSTSGTVVTIT 77

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (114), Expect = 2e-08
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 4/85 (4%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG---NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
           +  P  + I     S LGISL      N   I +  ++  S+   +G L  GD IL  +G
Sbjct: 13  ASGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDG 72

Query: 143 TDLRAATAEEAAYELAKPADKVTVL 167
           T +   +  EA   LA  ++KV + 
Sbjct: 73  TSMEHCSLLEATKLLASISEKVRLE 97

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 123

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (114), Expect = 2e-08
 Identities = 18/91 (19%), Positives = 32/91 (35%), Gaps = 6/91 (6%)

Query: 83  KDERSGEPRFLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAG-LRTGDRIL 138
           +D    +  FL    +K +   G +++GG      + V SV         G + TGD I+
Sbjct: 11  RDASQLKGTFLSTTLKKSNMGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIV 70

Query: 139 EYNGTDLRAATAEEAAYEL--AKPADKVTVL 167
             N   +   T  +             V ++
Sbjct: 71  YINEVCVLGHTHADVVKLFQSVPIGQSVNLV 101

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.2 bits (112), Expect = 2e-08
 Identities = 17/80 (21%), Positives = 31/80 (38%), Gaps = 2/80 (2%)

Query: 89  EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGY-SAGLRTGDRILEYNGTDLRA 147
             + + IE  +   LG ++       + +  +  G     S  L  GD +LE NG ++R 
Sbjct: 18  TVKIVRIEKARDIPLGATVRNEMD-SVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRG 76

Query: 148 ATAEEAAYELAKPADKVTVL 167
               E    L+     +T +
Sbjct: 77  KDVNEVFDLLSDMHGTLTFV 96

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

 Score = 46.4 bits (110), Expect = 4e-08
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 5/70 (7%)

Query: 103 LGISLVGG----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL 157
           LGIS+VG        GIY+ S+  G    + G +  GD +L+ N  +    + ++A   L
Sbjct: 15  LGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVL 74

Query: 158 AKPADKVTVL 167
                K   +
Sbjct: 75  RDIVHKPGPI 84

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 5e-08
 Identities = 24/90 (26%), Positives = 36/90 (40%), Gaps = 10/90 (11%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG--------NAVGIYVHSVQSGSLGYSAGL-RTGDRI 137
           S       +  R    LG S+ GG           GI+V  +  G   + AG  + GDR+
Sbjct: 5   SSGRHVACLA-RSERGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRV 63

Query: 138 LEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           L  NG D+  A  + A   L   +  + +L
Sbjct: 64  LSINGVDVTEARHDHAVSLLTAASPTIALL 93

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.5 bits (110), Expect = 6e-08
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 7/87 (8%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG-----NAVGIYVHSVQSGSLGYSAG-LRTGDRILEY 140
           SG    + +E R  S LG+ L+ G      A G+Y+ ++  GS   + G L  GDRILE 
Sbjct: 6   SGYVFTVELE-RGPSGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEV 64

Query: 141 NGTDLRAATAEEAAYELAKPADKVTVL 167
           NG+ L       A   +     K+  L
Sbjct: 65  NGSSLLGLGYLRAVDLIRHGGKKMRFL 91

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 98

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 46.1 bits (109), Expect = 7e-08
 Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 12/77 (15%)

Query: 103 LGISLVGGNAV-----------GIYVHSVQSGSLGY-SAGLRTGDRILEYNGTDLRAATA 150
           LG  +  G +V           GI++  +  G L   +  L   D ++E NG ++   T 
Sbjct: 17  LGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTL 76

Query: 151 EEAAYELAKPADKVTVL 167
           ++    +   +  + + 
Sbjct: 77  DQVTDMMVANSSNLIIT 93

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (107), Expect = 1e-07
 Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 5/86 (5%)

Query: 87  SGEPR-FLMIETRKCSN-LGISLVGG--NAVGIYVHSVQSGSLGYSAGL-RTGDRILEYN 141
           SG+   +  ++  K +   G S+ GG    + +YV  +         G  R GD+I+E N
Sbjct: 6   SGQDFDYFTVDMEKGAKGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEIN 65

Query: 142 GTDLRAATAEEAAYELAKPADKVTVL 167
           G   R  T   A   +     +V +L
Sbjct: 66  GESTRDMTHARAIELIKSGGRRVRLL 91

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.0 bits (106), Expect = 2e-07
 Identities = 23/82 (28%), Positives = 33/82 (40%), Gaps = 11/82 (13%)

Query: 97  TRKCSNLGISLVGGNAVG----------IYVHSVQSGSLGYSAG-LRTGDRILEYNGTDL 145
            +   +LGIS+      G          IYV ++       S G +  GDR+L  NG  L
Sbjct: 11  AKTDGSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSL 70

Query: 146 RAATAEEAAYELAKPADKVTVL 167
             AT ++A   L      V +L
Sbjct: 71  EGATHKQAVETLRNTGQVVHLL 92

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.6 bits (105), Expect = 2e-07
 Identities = 15/67 (22%), Positives = 27/67 (40%), Gaps = 2/67 (2%)

Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP 160
            G  L GG      + +  +  GS   +A L  GD IL  +G    + T  +A   +   
Sbjct: 17  WGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAA 76

Query: 161 ADKVTVL 167
           + ++ + 
Sbjct: 77  SYQLCLK 83

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (105), Expect = 2e-07
 Identities = 17/87 (19%), Positives = 34/87 (39%), Gaps = 6/87 (6%)

Query: 87  SGEPRFLMIETRKCSN-LGISLVGGNAVG--IYVHSVQSGSLGYSAG-LRTGDRILEYNG 142
           S   + L +  R+  +  G  ++GG+  G  I + +V +       G L  GD ++  +G
Sbjct: 5   SSGYKELDVHLRRMESGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDG 64

Query: 143 TDLRAATAEEAAYEL--AKPADKVTVL 167
             +   T       +  A    +V + 
Sbjct: 65  IPVAGKTHRYVIDLMHHAARNGQVNLT 91

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]} Length = 88

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

 Score = 44.1 bits (104), Expect = 3e-07
 Identities = 14/66 (21%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 103 LGISL-VGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPA 161
            G  +   G   G+ V++V++G+     GL+ GD I+  N   ++     E    L    
Sbjct: 14  EGAEMSNKGKDQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVK--NIAELRKVLDSKP 71

Query: 162 DKVTVL 167
             + + 
Sbjct: 72  SVLALN 77

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (105), Expect = 3e-07
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 12/92 (13%)

Query: 87  SGEPRFLMIETRKCSNLGISLVGG----------NAVGIYVHSVQSGSLGYSAG-LRTGD 135
           SG+   L++  R   +LG +++GG          ++ GI+V  +         G L+  D
Sbjct: 6   SGKSLTLVLH-RDSGSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHD 64

Query: 136 RILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           RI+E NG DL  AT ++A        + + V 
Sbjct: 65  RIIEVNGRDLSRATHDQAVEAFKTAKEPIVVQ 96

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (103), Expect = 7e-07
 Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 7/59 (11%)

Query: 103 LGISLVGG------NAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAA 154
           LG+SL G         +GI++ S+  G   +  G LR  D+++  NG  L   +  EA 
Sbjct: 39  LGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAM 97

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 7e-07
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 10/114 (8%)

Query: 61  PGTNRKSSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGG-----NAVG 114
           P  N  +    + S  +   V   E + E     +   K S  LG SL GG         
Sbjct: 2   PDLNSSTDSAASASAASDVSV---ESTAEATVCTVTLEKMSAGLGFSLEGGKGSLHGDKP 58

Query: 115 IYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           + ++ +  G+    +  ++ GD IL+  GT ++  T  EA   +    D    +
Sbjct: 59  LTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPDGPVTI 112

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 2e-06
 Identities = 29/91 (31%), Positives = 35/91 (38%), Gaps = 12/91 (13%)

Query: 89  EPRFLMIETRKCSNLGISLVGG-----------NAVGIYVHSVQSGSLGYSAG-LRTGDR 136
             R L I+      LGIS+ GG              GI++  V         G LR G R
Sbjct: 9   GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLR 68

Query: 137 ILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           +LE N   L   T  EA   L    D +TVL
Sbjct: 69  LLEVNQQSLLGLTHGEAVQLLRSVGDTLTVL 99

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 6/84 (7%)

Query: 87  SGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDL 145
           SG+   + +   K +   G ++             Q   +    GL  GD I+E N  ++
Sbjct: 6   SGQAELMTLTIVKGAQGFGFTIADSPT---GQRVKQILDIQGCPGLCEGDLIVEINQQNV 62

Query: 146 RAATAEEAAYEL--AKPADKVTVL 167
           +  +  E    L       + +++
Sbjct: 63  QNLSHTEVVDILKDCPIGSETSLI 86

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]} Length = 122

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.9 bits (98), Expect = 3e-06
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 103 LGISLVGG------NAVGIYVHSVQSGSLGYSAGL-RTGDRILEYNGTDLRAATAEEAAY 155
            GI L G        +    +  +++ S     G+ + GDR++  NG     +T EEA  
Sbjct: 29  FGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQ 88

Query: 156 ELAKPADKVTVL 167
            L   +    V 
Sbjct: 89  LLRDSSITSKVT 100

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.5 bits (97), Expect = 4e-06
 Identities = 15/67 (22%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 103 LGISLVGG--NAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP 160
            G  L GG    + + + S++ G     A +R GD +L  +G   +  T  EA  ++   
Sbjct: 17  WGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKAC 76

Query: 161 ADKVTVL 167
              + + 
Sbjct: 77  TGSLNMT 83

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (98), Expect = 4e-06
 Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 6/70 (8%)

Query: 103 LGISLVGG----NAVGIYVHSVQSGSLGY-SAGLRTGDRILEYNGTDLRAATAEEAAYEL 157
           LG+++       + +GIY+  +   S+      +R GDRI++ NG +++    E  A   
Sbjct: 34  LGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQNRE-EAVALLT 92

Query: 158 AKPADKVTVL 167
           ++     ++L
Sbjct: 93  SEENKNFSLL 102

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 112

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.6 bits (97), Expect = 4e-06
 Identities = 17/72 (23%), Positives = 28/72 (38%), Gaps = 2/72 (2%)

Query: 98  RKCSNLGISLVGG-NAVGIYVHSVQSGSLGYSAGL-RTGDRILEYNGTDLRAATAEEAAY 155
           RK   LG  +    +   + +  +  G     +GL + GD IL  N   L   + + A  
Sbjct: 10  RKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALE 69

Query: 156 ELAKPADKVTVL 167
            L   A +  V+
Sbjct: 70  VLRGIASETHVV 81

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]} Length = 114

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.2 bits (96), Expect = 6e-06
 Identities = 18/93 (19%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 87  SGEPRFLMIETRKCSN--LGISLVGG---------NAVGIYVHSVQSGSLGY-SAGLRTG 134
           SG  +   +   +  N   G  ++             V   +  +  GS     A L+ G
Sbjct: 6   SGSLQTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVG 65

Query: 135 DRILEYNGTDLRAATAEEAAYELAKPADKVTVL 167
           DRIL  NG  +      +    +      VT+ 
Sbjct: 66  DRILAVNGQSIINMPHADIVKLIKDAGLSVTLR 98

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 126

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.2 bits (96), Expect = 8e-06
 Identities = 13/105 (12%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 67  SSIQHNTSTLTRTHVCKDERSGEPRFLMIETRKCSN-LGISLVGGNAVGIYVHSVQSGSL 125
           S    + +   +    K   S   + +  +    +  LG+ ++      + +  + +   
Sbjct: 3   SGSSGSKNEKEQLSKAKASVSSLNKVIQTKLTVGNLGLGLVVIQNG-PYLQISHLINKGA 61

Query: 126 GYSAG-LRTGDRILEYNGTDLRAATAEEAAYEL--AKPADKVTVL 167
             S G L+ GD ++     ++   T  E    L        + + 
Sbjct: 62  AASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVLQIK 106

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 111

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.4 bits (94), Expect = 1e-05
 Identities = 21/84 (25%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 84  DERSGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGT 143
            +R   PR +   T +  +LG +L G     + VH +        AG + GD I+   G 
Sbjct: 10  SKRWSPPRGIHF-TVEEGDLGFTLRGNT--PVQVHFLDPHCSASLAGAKEGDYIVSIQGV 66

Query: 144 DLRAATAEEAAYEL-AKPADKVTV 166
           D +  T  E    L +   ++V +
Sbjct: 67  DCKWLTVSEVMKLLKSFGGEEVEM 90

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]} Length = 100

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (90), Expect = 3e-05
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 96  ETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAY 155
                  L          G+ +H V  GS  + AGLR GD IL      ++ A   E  Y
Sbjct: 14  SILAELQLREPSFPDVQHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQNA---EDVY 70

Query: 156 ELAKPADKVTV 166
           E  +   ++ V
Sbjct: 71  EAVRTQSQLAV 81

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]} Length = 92

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

 Score = 36.5 bits (84), Expect = 2e-04
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 103 LGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYEL-AKPA 161
           L I+  GG+   + V +   G     AG R GD I+  +GT ++  +  + +  L  +  
Sbjct: 9   LEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEAD 68

Query: 162 DKVTV 166
            +V V
Sbjct: 69  SQVEV 73

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 103

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 34.6 bits (79), Expect = 0.001
 Identities = 13/53 (24%), Positives = 19/53 (35%), Gaps = 1/53 (1%)

Query: 114 GIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV 166
           G+ + SV  GS      L  G  I   NG      T   AA +     + + +
Sbjct: 4   GVQIDSVVPGSPASKV-LTPGLVIESINGMPTSNLTTYSAALKTISVGEVINI 55

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d2fcfa1	96	Multiple PDZ domain protein {Human (Homo sapiens)	99.85
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	99.83
d1qava_	90	Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}	99.83
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.82
d1m5za_	91	Glutamate receptor interacting protein {Rat (Rattu	99.82
d1wi2a_	104	PDZ domain containing protein 11, Pdzk11 {Mouse (M	99.82
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	99.82
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	99.82
d1rgra_	93	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	99.81
d2fe5a1	92	Synapse-associated protein 102 {Human (Homo sapien	99.81
d1t2ma1	92	Afadin {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1uhpa_	107	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.8
d1ihja_	94	Inad {Fruit fly (Drosophila melanogaster) [TaxId:	99.8
d1ozia_	99	Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 1	99.8
d1x5qa1	97	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.8
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	99.79
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1p1da2	99	Glutamate receptor interacting protein {Rat (Rattu	99.79
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.79
d1q3oa_	104	Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId	99.79
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1wf8a1	94	Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}	99.79
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.79
d2h3la1	103	Erbin {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	99.78
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.78
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	99.78
d1ujua_	111	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	99.77
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	99.77
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	99.77
d2fnea1	88	Multiple PDZ domain protein {Human (Homo sapiens)	99.76
d1i16a_	130	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.76
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	99.76
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	99.75
d2f0aa1	92	Segment polarity protein dishevelled homolog Dvl-2	99.75
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	99.74
d1rzxa_	98	GTPase-binding domain of the cell polarity protein	99.74
d1ujda_	117	Hypothetical protein KIAA0559 {Human (Homo sapiens	99.74
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	99.74
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	99.73
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	99.73
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	99.73
d1x45a1	85	Amyloid beta A4 precursor protein-binding family A	99.72
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	99.72
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.72
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	99.72
d1wi4a1	96	Syntaxin binding protein 4 {Mouse (Mus musculus) [	99.71
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	99.71
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	99.7
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	99.7
d1va8a1	100	Maguk p55 subfamily member 5 {Mouse (Mus musculus)	99.69
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	99.69
d2cssa1	108	Regulating synaptic membrane exocytosis protein 1,	99.69
d1x5ra1	99	Glutamate receptor interacting protein 2, GRIP2 (K	99.68
d1wg6a_	127	Partitioning-defective 3-like protein, PAR3-L (RIK	99.66
d1v6ba_	118	Harmonin {Mouse (Mus musculus) [TaxId: 10090]}	99.64
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	99.63
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	99.62
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	99.61
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	99.6
d1wh1a_	124	Hypothetical protein KIAA1095 {Human (Homo sapiens	99.5
d2z9ia1	88	Protease PepD {Mycobacterium tuberculosis [TaxId:	99.43
d1ky9b2	88	Protease Do (DegP, HtrA), C-terminal domains {Esch	99.16
d1lcya1	100	Mitochondrial serine protease HtrA2 {Human (Homo s	99.02
d1k32a1	91	Tricorn protease {Archaeon Thermoplasma acidophilu	98.99
d2hgaa1	103	Uncharacterized protein MTH1368 {Methanobacterium	98.95
d1ky9a1	94	Protease Do (DegP, HtrA), C-terminal domains {Esch	98.94
d1sota1	99	Stress sensor protease DegS, C-terminal domain {Es	98.92
d2i6va1	87	General secretion pathway protein C, EpsC {Vibrio	98.86
d1wf7a_	103	Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 1	97.42
d1tp5a1	102	Synaptic protein PSD-95 {Rat (Rattus norvegicus) [	97.37
d1uita_	117	Discs large 5 protein KIAA0583 {Human (Homo sapien	97.25
d1rgwa_	85	Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [Tax	97.11
d1ujva_	96	Membrane associated guanylate kinase inverted-2 (M	97.09
d1v5la_	103	Alpha-actinin-2 associated LIM protein {Mouse (Mus	97.06
d1vb7a_	94	PDZ-LIM protein mystique {Mouse (Mus musculus) [Ta	97.05
d1um1a_	110	Hypothetical protein KIAA1849 {Human (Homo sapiens	97.0
d1whaa_	105	Scribble (KIAA0147) {Human (Homo sapiens) [TaxId:	96.96
d1n7ea_	95	Glutamate receptor-interacting protein 1, GRIP1 {R	96.81
d2csja1	104	Tight junction protein ZO-2, Tjp2 {Mouse (Mus musc	96.72
d1v62a_	117	Glutamate receptor interacting protein 2, GRIP2 (K	96.72
d1ueqa_	123	Membrane associated guanylate kinase inverted-2 (M	96.71
d1wfva_	103	Membrane associated guanylate kinase inverted-2 (M	96.58
d1r6ja_	82	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	96.54
d1g9oa_	91	Na+/H+ exchanger regulatory factor, NHERF {Human (	96.44
d1uewa_	114	Membrane associated guanylate kinase inverted-2 (M	96.43
d2f5ya1	77	Regulator of G-protein signaling 3, RGS3 {Human (H	96.19
d1y7na1	79	Amyloid beta A4 precursor protein-binding family A	95.97
d1kwaa_	88	Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}	95.92
d1wifa_	126	hypothetical PDZ domain containing protein Uqcrc2	95.88
d1x6da1	107	Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]	95.71
d1uepa_	103	Membrane associated guanylate kinase inverted-2 (M	95.59
d1vaea_	111	Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}	95.31
d1uf1a_	128	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	94.79
d1v5qa_	122	Glutamate receptor interacting protein {Mouse (Mus	93.7
d1ueza_	101	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	92.58
d1qaua_	112	Neuronal nitric oxide synthase, NNOS {Rat (Rattus	92.38
d1fc6a3	92	Photosystem II D1 C-terminal processing protease {	91.43
d1x5na1	101	Harmonin {Human (Homo sapiens) [TaxId: 9606]}	89.03
d2cs5a1	106	Tyrosine-protein phosphatase non-receptor type 4,	84.04
d1ufxa_	103	KIAA1526 protein {Human (Homo sapiens) [TaxId: 960	83.25
d1w9ea1	85	Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}	83.09

>d2fcfa1 b.36.1.1 (A:1148-1243) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=5.1e-21  Score=126.35  Aligned_cols=83  Identities=36%  Similarity=0.571  Sum_probs=74.2

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-----------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHH
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-----------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYE  156 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-----------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~  156 (173)
                      +||+|+|.|.++.+|||+|.||.           ..++||..|.++|+|+++| |++||+|++|||.++.+++|++++.+
T Consensus         1 qpr~V~l~k~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~V~~v~~~s~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   80 (96)
T d2fcfa1           1 QPRRVELWREPSKSLGISIVGGRGMGSRLSNGEVMRGIFIKHVLEDSPAGKNGTLKPGDRIVEVDGMDLRDASHEQAVEA   80 (96)
T ss_dssp             SCEEEEECCCC-CCCCEEEECCCC-------------EEEEEECSSSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEeCCCCCCCEEEEcccCCCcccccccCCCCEEEEEECCCCHHHHcCCCcCCCEEEEECCEECCCCCHHHHHHH
Confidence            47999999988889999999864           2489999999999999976 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEEC
Q psy7774         157 LAKPADKVTVLAHSD  171 (173)
Q Consensus       157 l~~~g~~v~l~v~r~  171 (173)
                      |+++++.++|+|+|.
T Consensus        81 lk~~~~~v~L~V~r~   95 (96)
T d2fcfa1          81 IRKAGNPVVFMVQSI   95 (96)
T ss_dssp             HHTCCSSEEEEEECC
T ss_pred             HHcCCCeEEEEEEEc
Confidence            999999999999974

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=3.1e-20  Score=121.32  Aligned_cols=83  Identities=28%  Similarity=0.478  Sum_probs=77.0

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      -||.|+|.|+. .+|||++.++. ..++||..|.+|++|+++||+.||+|++|||.++.+++|++++.+++.+++.++|+
T Consensus         3 ~Pr~v~l~k~~-~g~Gf~i~~~~~~~~~~V~~V~~g~~A~~aGl~~GD~Il~VNg~~v~~~t~~e~~~ll~~~~~~v~L~   81 (91)
T d1g9oa_           3 LPRLCCLEKGP-NGYGFHLHGEKGKLGQYIRLVEPGSPAEKAGLLAGDRLVEVNGENVEKETHQQVVSRIRAALNAVRLL   81 (91)
T ss_dssp             CCEEEEEECBT-TBCCEEEEECTTCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEE
T ss_pred             CCEEEEEEECC-CeeeEEEEecCCCCCEEEEEEcCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEE
Confidence            48999999987 78999999876 56899999999999999999999999999999999999999999999999999999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      |.+..
T Consensus        82 v~~~~   86 (91)
T d1g9oa_          82 VVDPE   86 (91)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            98753

>d1qava_ b.36.1.1 (A:) Syntrophin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntrophin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.83  E-value=1.9e-20  Score=122.10  Aligned_cols=83  Identities=30%  Similarity=0.422  Sum_probs=77.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      ++++|+|.|.+.++|||+|.+|.  ..++||..|.++|+|+++| |++||+|++|||.++.+++|++++.+|++++..++
T Consensus         4 q~r~V~l~k~~~~~lG~~i~gg~~~~~~i~V~~V~~~~~A~~~G~L~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~   83 (90)
T d1qava_           4 QRRRVTVRKADAGGLGISIKGGRENKMPILISKIFKGLAADQTEALFVGDAILSVNGEDLSSATHDEAVQALKKTGKEVV   83 (90)
T ss_dssp             SCEEEEEECCTTTCCCEEEEEEGGGTEEEEEEEECTTSHHHHTTCCCTTEEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             eEEEEEEEeCCCCccCEEEEccccCCCCEEEEEEcCCCceeeCCCCCccCEEEEECCEECCCCCHHHHHHHHHhCCCeEE
Confidence            57999999987789999999875  4589999999999999977 99999999999999999999999999999999999


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      |+|+|.
T Consensus        84 l~v~~~   89 (90)
T d1qava_          84 LEVKYM   89 (90)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999985

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=6e-20  Score=122.36  Aligned_cols=85  Identities=38%  Similarity=0.645  Sum_probs=78.5

Q ss_pred             CCCCEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          87 SGEPRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        87 ~~~~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      ..++|.|+|.|.+ .+|||+|.++. ..++||..|.+||+|+++| |++||+|++|||+++.+++|++++.+|+.+++.+
T Consensus         7 ~~~~r~V~l~k~~-~glG~~i~~~~~~~gv~V~~v~~gs~A~~~G~l~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v   85 (102)
T d1tp5a1           7 PREPRRIVIHRGS-TGLGFNIVGGEDGEGIFISFILAGGPADLSGELRKGDQILSVNGVDLRNASHEQAAIALKNAGQTV   85 (102)
T ss_dssp             CCSCEEEEEECTT-SCCCEEEEECGGGCCEEEEEECTTSHHHHHSCCCTTEEEEEETTEECTTCCHHHHHHHHHTSCSEE
T ss_pred             CCCCEEEEEEeCC-CcccEEEEeccCCCCEEEEEecCCchHHHcCCCcccCEEEEECCeEcCCCCHHHHHHHHHcCCCeE
Confidence            4578999999976 79999999886 6699999999999999977 9999999999999999999999999999999999


Q ss_pred             EEEEEECC
Q psy7774         165 TVLAHSDT  172 (173)
Q Consensus       165 ~l~v~r~~  172 (173)
                      +|+++|++
T Consensus        86 ~L~v~~~~   93 (102)
T d1tp5a1          86 TIIAQYKP   93 (102)
T ss_dssp             EEEEEECH
T ss_pred             EEEEEECC
Confidence            99998863

>d1m5za_ b.36.1.1 (A:) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.82  E-value=9.1e-20  Score=119.07  Aligned_cols=84  Identities=20%  Similarity=0.329  Sum_probs=77.5

Q ss_pred             CCEEEEEEccC-CCcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          89 EPRFLMIETRK-CSNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        89 ~~~~v~l~~~~-~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      +.+.++|.|.. ..+|||+|.++. ..++||..|.++|+|+++||+.||+|++|||.++.++++.+++.+++.+++.+.|
T Consensus         6 e~~~v~l~k~~~~~~~Gf~i~~~~~~~g~~V~~V~~~g~A~~~gL~~GD~Il~VNg~~v~~~t~~~~~~~l~~~~~~v~L   85 (91)
T d1m5za_           6 ELHKVTLYKDSGMEDFGFSVADGLLEKGVYVKNIRPAGPGDLGGLKPYDRLLQVNHVRTRDFDCCLVVPLIAESGNKLDL   85 (91)
T ss_dssp             EEEEEEEECCTTCSSSSEEEEECTTSSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTSTTEEEE
T ss_pred             ceEEEEEEECCCCCceeEEEeccCCCCCEEEEEECCCChhHhCcCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEE
Confidence            56889999966 468999999876 6799999999999999999999999999999999999999999999999999999


Q ss_pred             EEEECC
Q psy7774         167 LAHSDT  172 (173)
Q Consensus       167 ~v~r~~  172 (173)
                      +|.|++
T Consensus        86 ~v~R~P   91 (91)
T d1m5za_          86 VISRNP   91 (91)
T ss_dssp             EEEECC
T ss_pred             EEEECc
Confidence            999974

>d1wi2a_ b.36.1.1 (A:) PDZ domain containing protein 11, Pdzk11 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ domain containing protein 11, Pdzk11
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.82  E-value=5e-20  Score=123.21  Aligned_cols=84  Identities=24%  Similarity=0.398  Sum_probs=76.0

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      ..||+|+|.|.++.+|||+|.||.  ..++||..|.++++|+++||++||+|++|||+++.+++|++++.+|+..+ .+.
T Consensus        14 ~~pr~V~l~r~~~~~lGf~i~gg~~~~~gi~V~~V~~~s~A~~~GL~~GD~Il~VNg~~v~~~~~~ev~~llk~~~-~v~   92 (104)
T d1wi2a_          14 FLPRIVTLKKPPGAQLGFNIRGGKASQLGIFISKVIPDSDAHRAGLQEGDQVLAVNDVDFQDIEHSKAVEILKTAR-EIS   92 (104)
T ss_dssp             SCCEEEEECCCTTCCCSEEEECCSSSCCCCEEEEECTTSHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHHHSS-SEE
T ss_pred             CcCEEEEEEeCCCCCcceEEEccccCCCCEEEEEECCCChhHhcccccCCEEEEECCEECCCCCHHHHHHHHhcCC-eEE
Confidence            468999999987789999999876  45899999999999999999999999999999999999999999998764 689


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|+|.+
T Consensus        93 l~V~~~~   99 (104)
T d1wi2a_          93 MRVRFFS   99 (104)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            9998764

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=4.7e-20  Score=125.84  Aligned_cols=84  Identities=40%  Similarity=0.697  Sum_probs=79.1

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      .+++.|+|.|.. .+|||+|.++.+.++||..|.++++|++++|++||+|++|||+++.+++|++++.+|+.+++.|+|+
T Consensus        18 ~~~r~v~l~k~~-~glG~~i~gg~~~gi~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~~l~~~~~~v~l~   96 (117)
T d1uita_          18 EEPRHVKVQKGS-EPLGISIVSGEKGGIYVSKVTVGSIAHQAGLEYGDQLLEFNGINLRSATEQQARLIIGQQCDTITIL   96 (117)
T ss_dssp             CCCEEEEEECSS-CCCCEEEEECTTSCEEEEEECTTSHHHHHTCCTTCEECEETTEETTTCCHHHHHHHTTSCCSEEEEE
T ss_pred             CCCEEEEEEeCC-CccCEEEEccCCCCEEEEEEecCChHHhCCCCCCCEeeeECCcccCCCCHHHHHHHHHCCCCeEEEE
Confidence            478999999976 7999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      ++|++
T Consensus        97 v~~~p  101 (117)
T d1uita_          97 AQYNP  101 (117)
T ss_dssp             ECCCS
T ss_pred             EEECC
Confidence            98764

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2e-20  Score=120.74  Aligned_cols=82  Identities=16%  Similarity=0.277  Sum_probs=74.7

Q ss_pred             CEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      |++|++.+  +.+|||++.||.  ..++||..|.+|++|++++|++||+|++|||.++.+++|++++.+++.+++.++|+
T Consensus         2 p~~V~l~~--~~~~Gf~i~gg~~~~~~v~V~~v~~gs~A~~~~L~~GD~Il~VNg~~v~~~s~~ev~~~i~~~~~~v~L~   79 (85)
T d1rgwa_           2 AYSVTLTG--PGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIKSASYNLSLT   79 (85)
T ss_dssp             EEEEEECC--SSCCCEEECCCGGGTSCCBEEEECTTSHHHHSSCCCCSBEEEETTEECTTCCHHHHHHHHTTCSSCEEEE
T ss_pred             CEEEEecC--CCCCCEEEEeecCCCCCEEEEEecCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEE
Confidence            57788865  379999999886  56799999999999999999999999999999999999999999999999999999


Q ss_pred             EEECCC
Q psy7774         168 AHSDTN  173 (173)
Q Consensus       168 v~r~~~  173 (173)
                      |+|..+
T Consensus        80 V~R~~r   85 (85)
T d1rgwa_          80 LQKSKR   85 (85)
T ss_dssp             EESCCC
T ss_pred             EEECCC
Confidence            999753

>d1rgra_ b.36.1.1 (A:) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.81  E-value=4.7e-20  Score=120.97  Aligned_cols=82  Identities=27%  Similarity=0.396  Sum_probs=74.8

Q ss_pred             CEEEEEEccCCCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774          90 PRFLMIETRKCSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA  161 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g  161 (173)
                      .++|+|.|.. .+|||+|.||.       ..++||..|.+||+|+++| |+.||+|++|||.++.+++|++++.+|+.++
T Consensus         2 ~~~V~l~k~~-~glG~~i~gg~~~~~~~~~~gi~I~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~   80 (93)
T d1rgra_           2 YEEITLERGN-SGLGFSIAGGTDNPHIGDDPSIFITKIIPGGAAAQDGRLRVNDSILFVNEVDVREVTHSAAVEALKEAG   80 (93)
T ss_dssp             EEEEEEECCS-SCCSEEECCCSSSCSCTTCCCCCEEEECTTSHHHHHCCCCTTCEEEEETTEECSSSCHHHHHHHHHHTT
T ss_pred             CEEEEEEeCC-CcCCEEEEeecCCCCcCCCCCEEEEEECCCChHHhcCCCCcCcEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            4679999876 78999998864       3589999999999999987 9999999999999999999999999999999


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      +.+.|+|.|..
T Consensus        81 ~~v~L~v~R~~   91 (93)
T d1rgra_          81 SIVRLYVMRRK   91 (93)
T ss_dssp             TEEEEEEECSC
T ss_pred             CEEEEEEEeCC
Confidence            99999999864

>d2fe5a1 b.36.1.1 (A:223-314) Synapse-associated protein 102 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synapse-associated protein 102
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=1.2e-19  Score=118.72  Aligned_cols=81  Identities=28%  Similarity=0.414  Sum_probs=74.3

Q ss_pred             EEEEEEccCCCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCC
Q psy7774          91 RFLMIETRKCSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPAD  162 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~  162 (173)
                      ..|+|.|.+ .+|||+|.||.       ..++||..|.++|+|+++| |++||+|++|||.++.+++|++++.+|+.+++
T Consensus         3 ~~V~L~k~~-~glG~~i~gg~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lk~~~~   81 (92)
T d2fe5a1           3 MEVNLLKGP-KGLGFSIAGGIGNQHIPGDNSIYITKIIEGGAAQKDGRLQIGDRLLAVNNTNLQDVRHEEAVASLKNTSD   81 (92)
T ss_dssp             EEEEEECCT-TCSCEEEEECBTSCSBTTBCCEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCBHHHHHHHHHTCCS
T ss_pred             EEEEEEECC-CccCEEEEeecCCccCCCCCCEEEEEECCCCChhhcCCCCCCCEEEEeCCeecCCCCHHHHHHHHHcCCC
Confidence            578999977 79999999864       3589999999999999976 99999999999999999999999999999999


Q ss_pred             eEEEEEEECC
Q psy7774         163 KVTVLAHSDT  172 (173)
Q Consensus       163 ~v~l~v~r~~  172 (173)
                      .++|+|.|+.
T Consensus        82 ~v~L~v~Rpg   91 (92)
T d2fe5a1          82 MVYLKVAKPG   91 (92)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEECCC
Confidence            9999999863

>d1t2ma1 b.36.1.1 (A:2-93) Afadin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Afadin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.2e-19  Score=117.50  Aligned_cols=80  Identities=28%  Similarity=0.439  Sum_probs=70.5

Q ss_pred             CEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774          90 PRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADK  163 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~  163 (173)
                      ..+|++.+  ..+|||+|.++.     ..++||..|.+||+|+++| |++||+|++|||.++.+++|++++.+|+.+++.
T Consensus         5 i~~v~l~~--~~glG~~i~g~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~ea~~~l~~~~~~   82 (92)
T d1t2ma1           5 IITVTLKK--QNGMGLSIVAAKGAGQDKLGIYVKSVVKGGAADVDGRLAAGDQLLSVDGRSLVGLSQERAAELMTRTSSV   82 (92)
T ss_dssp             EEEEEEEC--SSSCCEEEEEECCSSCCSCEEEEEEECTTSHHHHHTCCCSSEEEEEETTEECTTCCHHHHHHHHHSCCSE
T ss_pred             EEEEEEeC--CCccCEEEEeecCCCCCCCCEEEEEEcCCChHHhcCCCCcccEeeeeCCeecCCCCHHHHHHHHHcCCCe
Confidence            34455555  368999998765     3479999999999999977 999999999999999999999999999999999


Q ss_pred             EEEEEEEC
Q psy7774         164 VTVLAHSD  171 (173)
Q Consensus       164 v~l~v~r~  171 (173)
                      |+|+|.|.
T Consensus        83 v~L~v~R~   90 (92)
T d1t2ma1          83 VTLEVAKQ   90 (92)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEeC
Confidence            99999986

>d1uhpa_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.9e-19  Score=120.92  Aligned_cols=84  Identities=29%  Similarity=0.503  Sum_probs=75.9

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC----------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHH
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN----------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYE  156 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~----------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~  156 (173)
                      .+.++|+|.|.. .+|||+|.||.          ..++||..|.++++|+++| |++||+|++|||+++.+++|++++.+
T Consensus         7 g~~~~V~l~k~~-~~lGf~i~GG~~~~~~~~~~~~~gi~V~~V~~gs~A~~~G~L~~GD~Il~VNg~~v~~~t~~eav~~   85 (107)
T d1uhpa_           7 GKSLTLVLHRDS-GSLGFNIIGGRPSVDNHDGSSSEGIFVSKIVDSGPAAKEGGLQIHDRIIEVNGRDLSRATHDQAVEA   85 (107)
T ss_dssp             SEEEEEEECCSS-SCCSEEEECCCSCCCCTTSSCSCCCEEEEECSSSHHHHTTCCCSSCEEEEETTEECTTCCHHHHHHH
T ss_pred             CCEEEEEEEECC-CccCEEEEecccCCCcccccCCCCEEEEEECCCCHHHHhCCCcceeEEeEECCEECCCCCHHHHHHH
Confidence            356889998876 78999999874          3489999999999999976 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEECC
Q psy7774         157 LAKPADKVTVLAHSDT  172 (173)
Q Consensus       157 l~~~g~~v~l~v~r~~  172 (173)
                      |+.+++.+.|+|.|..
T Consensus        86 lk~~~~~v~l~v~r~~  101 (107)
T d1uhpa_          86 FKTAKEPIVVQVLRRT  101 (107)
T ss_dssp             HHHCCSSEEEEEEECC
T ss_pred             HHhCCCcEEEEEEECC
Confidence            9999999999998864

>d1ihja_ b.36.1.1 (A:) Inad {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Inad
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.80  E-value=1.3e-19  Score=119.03  Aligned_cols=81  Identities=25%  Similarity=0.462  Sum_probs=74.1

Q ss_pred             CEEEEEEccCCCcccEEEEccC--------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          90 PRFLMIETRKCSNLGISLVGGN--------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~--------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      .+.|+|.|.++.+|||+|.+|.        ..++||..|.++|+|+++| |++||+|++|||.++.+++|++++.+|+++
T Consensus         4 i~~V~L~k~~~~~lG~~i~gg~~~~~~~~~~~gi~I~~v~~gs~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~ll~~~   83 (94)
T d1ihja_           4 IHMVTLDKTGKKSFGICIVRGEVKDSPNTKTTGIFIKGIVPDSPAHLCGRLKVGDRILSLNGKDVRNSTEQAVIDLIKEA   83 (94)
T ss_dssp             EEEEEEECTTSSSCCEEEEEEEECCSSSCCEEEEEEEEECTTSHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHHS
T ss_pred             EEEEEEEeCCCCCcCEEEeccccCCCCccCCCCEEEEEECCCCHHHHhCCCChhcEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4678999987789999998864        2369999999999999976 999999999999999999999999999999


Q ss_pred             CCeEEEEEEE
Q psy7774         161 ADKVTVLAHS  170 (173)
Q Consensus       161 g~~v~l~v~r  170 (173)
                      ++.++|+|+|
T Consensus        84 ~~~v~L~V~R   93 (94)
T d1ihja_          84 DFKIELEIQT   93 (94)
T ss_dssp             CSEEEEEEEE
T ss_pred             CCEEEEEEEe
Confidence            9999999998

>d1ozia_ b.36.1.1 (A:) Phosphatase hPTP1e {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Phosphatase hPTP1e
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.80  E-value=3.4e-19  Score=118.11  Aligned_cols=84  Identities=29%  Similarity=0.398  Sum_probs=75.6

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC----------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHH
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN----------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYE  156 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~----------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~  156 (173)
                      .+.++|+|.|.. .+|||+|.++.          ..++||..|.++|+|+++| |++||+|++|||+++.+++|++++.+
T Consensus         3 g~~~~V~L~k~~-~~lG~~i~~~~~~~g~~~~~~~~~i~V~~V~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~~a~~~   81 (99)
T d1ozia_           3 GDTFEVELAKTD-GSLGISVTVLFDKGGVNTSVRHGGIYVKAIIPKGAAESDGRIHKGDRVLAVNGVSLEGATHKQAVET   81 (99)
T ss_dssp             TCEEEEEEECCS-SSCSEEEESCCSSSCSSCSSSCCCEEEEEECSSSHHHHHTCCCTTCEEEEETTEECSSCCHHHHHHH
T ss_pred             CCEEEEEEEECC-CCCcEEEEeeccCCCcccccCCCCEEEEEECCCChHHhcCCCCccCEEEEECCEEcCCCCHHHHHHH
Confidence            357899999976 68999998532          3479999999999999977 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEECC
Q psy7774         157 LAKPADKVTVLAHSDT  172 (173)
Q Consensus       157 l~~~g~~v~l~v~r~~  172 (173)
                      |+.++..|+|+|+|..
T Consensus        82 lk~~~~~v~L~v~R~~   97 (99)
T d1ozia_          82 LRNTGQVVHLLLEKGQ   97 (99)
T ss_dssp             HHHSCSEEEEEEECCC
T ss_pred             HHCCCCeEEEEEEeCC
Confidence            9999999999999875

>d1x5qa1 b.36.1.1 (A:8-104) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=5.3e-19  Score=116.74  Aligned_cols=82  Identities=33%  Similarity=0.497  Sum_probs=75.0

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      +..++++.|.. .+|||+|.++.        ..++||..|.+||+|+++||++||+|++|||.++.+++|.+++.+++++
T Consensus         8 ~~~~v~l~k~~-~glG~~i~gg~~~~~~~~~~~~i~V~~V~~gg~A~~~GL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~   86 (97)
T d1x5qa1           8 EELTLTILRQT-GGLGISIAGGKGSTPYKGDDEGIFISRVSEEGPAARAGVRVGDKLLEVNGVALQGAEHHEAVEALRGA   86 (97)
T ss_dssp             EEEEEEEECSS-SSCSEEEEECTTSCCSSTTCCSEEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHSC
T ss_pred             eEEEEEEEeCC-CeeCEEEEeccCCCCccCCCCCEEEEEECCCChhHhhcccCCCEEEEECCEECCCCCHHHHHHHHhCC
Confidence            45778888876 78999998775        3479999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEEEEEC
Q psy7774         161 ADKVTVLAHSD  171 (173)
Q Consensus       161 g~~v~l~v~r~  171 (173)
                      +..++|+|.|+
T Consensus        87 ~~~v~l~v~R~   97 (97)
T d1x5qa1          87 GTAVQMRVWRE   97 (97)
T ss_dssp             CSEEEEEEEEC
T ss_pred             CCEEEEEEEEC
Confidence            99999999985

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=5.1e-19  Score=119.40  Aligned_cols=84  Identities=31%  Similarity=0.436  Sum_probs=76.5

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA  161 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g  161 (173)
                      .+.++|+|.|.. .+|||.|.++.     ..++||..|.++++|+++| |++||+|++|||+++.+++|++++.+|+.++
T Consensus         7 g~~~~V~l~k~~-~glG~~i~~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~llk~~~   85 (110)
T d1um1a_           7 GYVFTVELERGP-SGLGMGLIDGMHTHLGAPGLYIQTLLPGSPAAADGRLSLGDRILEVNGSSLLGLGYLRAVDLIRHGG   85 (110)
T ss_dssp             CCEEEEEEECCT-TCCCEEEEETTTSTTCCSSEEEEEECTTSHHHHHSCCCTTCEEEEESSCBCSSCCHHHHHHHHHTCC
T ss_pred             CCEEEEEEEECC-CCCCEEEEeecCCCCCCCCEEEEEECCCCHHHHcCCCccCCEEEEECCEECCCCCHHHHHHHHHcCC
Confidence            467999999987 68999999875     3479999999999999976 9999999999999999999999999999999


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      ..+.|+|.|..
T Consensus        86 ~~v~l~v~r~~   96 (110)
T d1um1a_          86 KKMRFLVAKSD   96 (110)
T ss_dssp             SEEEEEEECCC
T ss_pred             CeEEEEEEeCC
Confidence            99999998753

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.6e-19  Score=113.97  Aligned_cols=78  Identities=22%  Similarity=0.295  Sum_probs=72.2

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      .+||+|+|.|...++|||++.++     +|..|.+||+|+++||+.||+|++|||+++.+++|++++.+++++++.++|+
T Consensus         3 ~~pr~V~l~k~~~g~~Gf~i~~g-----~V~~v~~g~~A~~~Gl~~GD~Il~INg~~v~~~t~~~~~~ll~~~~~~v~l~   77 (82)
T d1r6ja_           3 MDPRTITMHKDSTGHVGFIFKNG-----KITSIVKDSSAARNGLLTEHNICEINGQNVIGLKDSQIADILSTSGTVVTIT   77 (82)
T ss_dssp             TCCEEEEEECCTTSCCCEEEETT-----EEEEECTTSHHHHHTCCSSEEEEEETTEECTTCCHHHHHHHHHHSCSEEEEE
T ss_pred             CCCEEEEEEeCCCCCcCEEEEEE-----EEEEECCCChHHhcCcCCCCEEEEeCCeEEeeCCHHHHHHHHHcCCCEEEEE
Confidence            47899999998766799999875     6999999999999999999999999999999999999999999999999999


Q ss_pred             EEE
Q psy7774         168 AHS  170 (173)
Q Consensus       168 v~r  170 (173)
                      |..
T Consensus        78 v~p   80 (82)
T d1r6ja_          78 IMP   80 (82)
T ss_dssp             EEE
T ss_pred             EEc
Confidence            863

>d1p1da2 b.36.1.1 (A:115-213) Glutamate receptor interacting protein {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=2.2e-19  Score=119.03  Aligned_cols=85  Identities=20%  Similarity=0.360  Sum_probs=77.5

Q ss_pred             CCEEEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADK  163 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~  163 (173)
                      ..++|++.|.++.+|||++.++.    ..++||..|.++|+|+++| |++||+|++|||.++.+++|++++.+|+.+++.
T Consensus        10 ~~~~V~l~k~~~~~lG~~v~~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~ll~~~~~~   89 (99)
T d1p1da2          10 GTFHVKLPKKHSVELGITISSPSSRKPGDPLVISDIKKGSVAHRTGTLELGDKLLAIDNIRLDSCSMEDAVQILQQCEDL   89 (99)
T ss_dssp             SCEEEEECCCSSCCCCCEEECSCSSSTTCCCEEEECCSSSHHHHTSCCCTTCEEEEETTEEGGGCCHHHHHHHHHHCTTC
T ss_pred             CcEEEEEEECCCCccCEEEEecCCCCCCCCEEEEEEcCCchhhhcCCCCCCCEEEeeCCEECCCCCHHHHHHHHHcCCCe
Confidence            46889999977789999998764    3479999999999999977 999999999999999999999999999999999


Q ss_pred             EEEEEEECCC
Q psy7774         164 VTVLAHSDTN  173 (173)
Q Consensus       164 v~l~v~r~~~  173 (173)
                      ++|+|+|+.+
T Consensus        90 v~L~V~r~~d   99 (99)
T d1p1da2          90 VKLKIRKDED   99 (99)
T ss_dssp             EEEEEECCCC
T ss_pred             EEEEEEeCCC
Confidence            9999999865

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2e-19  Score=120.40  Aligned_cols=83  Identities=28%  Similarity=0.522  Sum_probs=75.7

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      .++.++|.|.+ .+|||+|.||.        ..++||..|.++++|+++| |++||+|++|||+++.+++|++++.+|++
T Consensus         7 ~~~~v~l~k~~-~glGf~i~gg~~~~~~~~~~~gi~V~~v~~gs~A~~~G~L~~GD~Il~INg~~v~~~~~~ev~~~l~~   85 (105)
T d1whaa_           7 GRHVACLARSE-RGLGFSIAGGKGSTPYRAGDAGIFVSRIAEGGAAHRAGTLQVGDRVLSINGVDVTEARHDHAVSLLTA   85 (105)
T ss_dssp             EEEEEEECCCT-TCCSCEEECCTTSCCSSTTCCSCEEEECCTTSSHHHHSSCCTTCEEEEESSCBCTTCCHHHHHHHHTS
T ss_pred             CCEEEEEEECC-CccCEEEEeccCCcccccCCCCEEEEEEcCCCchhhcCCccCCCEEEEECCEEcCCCcHHHHHHHHHc
Confidence            57889999877 78999999874        3479999999999999976 99999999999999999999999999999


Q ss_pred             CCCeEEEEEEECC
Q psy7774         160 PADKVTVLAHSDT  172 (173)
Q Consensus       160 ~g~~v~l~v~r~~  172 (173)
                      +++.|.|+|+|..
T Consensus        86 ~~~~v~l~v~R~~   98 (105)
T d1whaa_          86 ASPTIALLLEREA   98 (105)
T ss_dssp             CCSCEEEEEEECC
T ss_pred             CCCeEEEEEEECC
Confidence            9999999999864

>d1q3oa_ b.36.1.1 (A:) Shank1, PDZ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Shank1, PDZ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.79  E-value=3.7e-19  Score=118.88  Aligned_cols=84  Identities=21%  Similarity=0.410  Sum_probs=76.5

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--------------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHH
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--------------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAA  154 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--------------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~  154 (173)
                      ++++|+|.|.++.+|||.+.|+.              ..++||..|.+||+|+++||++||+|++|||.++.+++|.+++
T Consensus         5 ~~~tV~l~r~~~~~fGf~l~g~~~~~~~~~~~~~~~~~~~~~I~~v~~g~~A~~aGL~~GD~Il~INg~~v~~~~h~evv   84 (104)
T d1q3oa_           5 KEKTVLLQKKDSEGFGFVLRGAKAQTPIEEFTPTPAFPALQYLESVDEGGVAWRAGLRMGDFLIEVNGQNVVKVGHRQVV   84 (104)
T ss_dssp             EEEEEEEECCTTSCCSEEEEESSCCCTTSCCCCCSSCCSSEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHH
T ss_pred             ceEEEEEEECCCCccCEEEEeecccCccccccccccCCCCEEEEEECCCCHHHHcCCCCCCEEEEEcCeEcCCCCHHHHH
Confidence            46889999988789999999864              2368999999999999999999999999999999999999999


Q ss_pred             HHHhCCCCeEEEEEEECC
Q psy7774         155 YELAKPADKVTVLAHSDT  172 (173)
Q Consensus       155 ~~l~~~g~~v~l~v~r~~  172 (173)
                      .++++++..++|+|.+.+
T Consensus        85 ~~ik~~~~~v~L~V~~~~  102 (104)
T d1q3oa_          85 NMIRQGGNTLMVKVVMVT  102 (104)
T ss_dssp             HHHHHTTTEEEEEEEEEE
T ss_pred             HHHHcCCCeEEEEEEecC
Confidence            999999999999998753

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=3.2e-19  Score=115.73  Aligned_cols=81  Identities=22%  Similarity=0.276  Sum_probs=76.0

Q ss_pred             CEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      +|.|.|.|.++++|||++.++...++||..|.+||+|+++| |++||+|++|||.++.++++++++.+++.+++.|+|++
T Consensus         2 ~R~V~l~k~~~~~lG~~l~~~~~~~~~I~~v~~gg~A~~~g~l~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~L~i   81 (88)
T d1kwaa_           2 SRLVQFQKNTDEPMGITLKMNELNHCIVARIMHGGMIHRQGTLHVGDEIREINGISVANQTVEQLQKMLREMRGSITFKI   81 (88)
T ss_dssp             CEEEEEEECSSSCCCEEEECSCGGGEEEEEECTTSHHHHHTCCCTTCEEEEETTEEGGGSCHHHHHHHHHHCCEEEEEEE
T ss_pred             cEEEEEEeCCCCCccEEEEEcCCCCEEEEEECCCCHHHHcCCCccCcEEEEECCEECCCCCHHHHHHHHHcCCCcEEEEE
Confidence            68999999888999999998877899999999999999987 99999999999999999999999999999888999988


Q ss_pred             EE
Q psy7774         169 HS  170 (173)
Q Consensus       169 ~r  170 (173)
                      ..
T Consensus        82 ~p   83 (88)
T d1kwaa_          82 VP   83 (88)
T ss_dssp             EC
T ss_pred             Ee
Confidence            64

>d1wf8a1 b.36.1.1 (A:8-101) Neurabin-i {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neurabin-i
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.9e-19  Score=118.25  Aligned_cols=82  Identities=27%  Similarity=0.420  Sum_probs=73.9

Q ss_pred             CEEEEEEccCCCcccEEEEccC--------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          90 PRFLMIETRKCSNLGISLVGGN--------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~--------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      .++|+|.|.+ .+|||++.|+.        ..++||..|.++|+|+++| |+.||+|++|||.++.+++|++++.+|+++
T Consensus         3 ~~~V~L~k~~-~glG~~i~g~~~~~~~~~~~~gi~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~~~~~l~~~   81 (94)
T d1wf8a1           3 LFPVELEKDE-DGLGISIIGMGVGADAGLEKLGIFVKTVTEGGAAQRDGRIQVNDQIVEVDGISLVGVTQNFAATVLRNT   81 (94)
T ss_dssp             EEEEEEECBT-TBSCEEEEEEEESCCTTCCEEEEEEEEECTTCHHHHHCSSCTTCBEEEETTEECBSCCHHHHHHHHHHC
T ss_pred             EEEEEEEeCC-CCcCEEEEeccCCCCCCcCCCCEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            4679999977 79999998742        3479999999999999977 999999999999999999999999999999


Q ss_pred             CCeEEEEEEECC
Q psy7774         161 ADKVTVLAHSDT  172 (173)
Q Consensus       161 g~~v~l~v~r~~  172 (173)
                      ++.++|+|.|+.
T Consensus        82 ~~~v~L~V~R~k   93 (94)
T d1wf8a1          82 KGNVRFVIGREK   93 (94)
T ss_dssp             CSEEEEEEEEEC
T ss_pred             CCeEEEEEEeCC
Confidence            999999998863

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=1.4e-18  Score=120.22  Aligned_cols=83  Identities=28%  Similarity=0.485  Sum_probs=75.1

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      .+.+.|+|.+.++.+|||+|.||.  ..++||..|.+|++|+++||++||+|++|||+++.+++|++++.+|+.. ..+.
T Consensus        19 ~~~~~v~l~~~~~~~lGf~i~gg~~~~~gv~V~~V~~g~~A~~~gL~~GD~Il~INg~~v~~~s~~evv~~lr~~-~~v~   97 (128)
T d1uf1a_          19 GDEKKVNLVLGDGRSLGLTIRGGAEYGLGIYITGVDPGSEAEGSGLKVGDQILEVNGRSFLNILHDEAVRLLKSS-RHLI   97 (128)
T ss_dssp             SSEEEEEEECCSSCCCCEEEECCTTTTCCCEEEEECTTCHHHHHTCCTTCEEEEETTEECSSCCHHHHHHHHTTC-SEEE
T ss_pred             CCeEEEEEEECCCCccCEEEEeeccCCCCEEEEEECCCChHHhcCCCCCCEEEEECCEECCCCCHHHHHHHHhcC-CcEE
Confidence            467899999988789999999987  4589999999999999999999999999999999999999999999875 4788


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      |+|++.
T Consensus        98 l~v~~~  103 (128)
T d1uf1a_          98 LTVKDV  103 (128)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            988765

>d2h3la1 b.36.1.1 (A:1310-1412) Erbin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Erbin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.1e-18  Score=116.43  Aligned_cols=82  Identities=24%  Similarity=0.357  Sum_probs=71.7

Q ss_pred             CEEEEEEccCCCcccEEEEccC----------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC
Q psy7774          90 PRFLMIETRKCSNLGISLVGGN----------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK  159 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~----------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~  159 (173)
                      .+.+.+.+..+.+|||+|.||.          +.+|||+.|.++|||+++ |++||+|++|||.++.+++|++++.+|+.
T Consensus        10 ~~~v~v~~~~~~~lGf~I~Gg~~~~~~~~~~~~~gI~I~~V~~gs~A~~~-L~~GD~Il~VNg~~v~~~t~~eav~~l~~   88 (103)
T d2h3la1          10 KQEIRVRVEKDPELGFSISGGVGGRGNPFRPDDDGIFVTRVQPEGPASKL-LQPGDKIIQANGYSFINIEHGQAVSLLKT   88 (103)
T ss_dssp             EEEEEEEEECSSSCSEEEEETTTTCCCSSSTTCCSEEEEEECTTSTTTTT-CCTTCEEEEETTEECSSCCHHHHHHHHHH
T ss_pred             cEEEEEEEccCCCCCEEEeeecCCCCCccccCCCCEEEEEeCCCChHHhc-cCCCCEEEEECCEECCCCCHHHHHHHHHh
Confidence            3556666555578999999874          248999999999999875 99999999999999999999999999999


Q ss_pred             CCCeEEEEEEECC
Q psy7774         160 PADKVTVLAHSDT  172 (173)
Q Consensus       160 ~g~~v~l~v~r~~  172 (173)
                      +++.++|+|.|+.
T Consensus        89 ~~~~v~L~V~R~~  101 (103)
T d2h3la1          89 FQNTVELIIVREV  101 (103)
T ss_dssp             CCSEEEEEEEEEE
T ss_pred             CCCeEEEEEEEEC
Confidence            9999999999863

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.78  E-value=2.1e-19  Score=118.02  Aligned_cols=80  Identities=21%  Similarity=0.274  Sum_probs=71.5

Q ss_pred             EEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          91 RFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      .+|.+  ....+|||+|.||.  ..++||..|.++++|++++|++||+|++|||+++.+++|.+++.+|+.+++.+.|+|
T Consensus         8 ~tv~~--~g~~~~Gf~i~gg~d~~~~i~V~~v~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~~~~~l~~~~~~v~L~V   85 (94)
T d1vb7a_           8 LTVDV--AGPAPWGFRISGGRDFHTPIIVTKVTERGKAEAADLRPGDIIVAINGQSAENMLHAEAQSKIRQSASPLRLQL   85 (94)
T ss_dssp             EEEEE--CSSSCCSBCCEEETTTTEEEECCCBCTTSSHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSSEEEEE
T ss_pred             EEEEE--ECCCcCCEEEEeeccCCCCEEEEeccCCChhhhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            44554  33479999999987  457999999999999999999999999999999999999999999999999999999


Q ss_pred             EECC
Q psy7774         169 HSDT  172 (173)
Q Consensus       169 ~r~~  172 (173)
                      +|..
T Consensus        86 ~R~~   89 (94)
T d1vb7a_          86 DRSS   89 (94)
T ss_dssp             ECCC
T ss_pred             EECC
Confidence            9864

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.9e-18  Score=111.33  Aligned_cols=83  Identities=27%  Similarity=0.420  Sum_probs=75.0

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~  167 (173)
                      +||.+.+.|....+|||.+..+. .++||..|.+||+|+++||+.||+|++|||.++.++++++++.+++ ..+..+.|+
T Consensus         2 ~pr~v~l~k~~~~~lG~~l~~~~-~g~~V~~v~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~lk~~~~~~v~l~   80 (85)
T d1w9ea1           2 DPREVILCKDQDGKIGLRLKSID-NGIFVQLVQANSPASLVGLRFGDQVLQINGENCAGWSSDKAHKVLKQAFGEKITMT   80 (85)
T ss_dssp             CCEEEEEECCTTSCCSEEEEEET-TEEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHHHCCSSEEEEE
T ss_pred             CCEEEEEEeCCCCCEeEEEEeCC-CCEEEEEECCCCHHHHcCCCCccEEEEECCEEeCCCCHHHHHHHHhcCCCCEEEEE
Confidence            58999999988889999998654 5899999999999999999999999999999999999999999997 457889999


Q ss_pred             EEECC
Q psy7774         168 AHSDT  172 (173)
Q Consensus       168 v~r~~  172 (173)
                      |++++
T Consensus        81 v~~rP   85 (85)
T d1w9ea1          81 IRDRP   85 (85)
T ss_dssp             EECCT
T ss_pred             EeCCC
Confidence            98753

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.78  E-value=1.8e-18  Score=113.75  Aligned_cols=83  Identities=27%  Similarity=0.354  Sum_probs=75.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      ..++|.|.|.. ++|||+|.++.  ..++||..|.++++|+++| |++||+|++|||+++.+++|++++.+|+..++.+.
T Consensus         3 ~i~tV~l~k~~-~~lG~~i~g~~~~~~~v~I~~I~~g~~A~~~g~L~~GD~Il~INg~~v~~~~~~ev~~~l~~~~~~v~   81 (95)
T d1n7ea_           3 IIYTVELKRYG-GPLGITISGTEEPFDPIIISSLTKGGLAERTGAIHIGDRILAINSSSLKGKPLSEAIHLLQMAGETVT   81 (95)
T ss_dssp             CEEEEEEECTT-SCCCEEEECCSSTTSCCEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHTCCSEEE
T ss_pred             EEEEEEEEECC-CcEeEEEEecccCCCCEEEEEECCCChHHhcCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEE
Confidence            35789998865 89999999876  4579999999999999976 99999999999999999999999999999999999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|+|..
T Consensus        82 l~v~r~~   88 (95)
T d1n7ea_          82 LKIKKQT   88 (95)
T ss_dssp             EEEECCC
T ss_pred             EEEEECC
Confidence            9999864

>d1ujua_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.5e-19  Score=122.21  Aligned_cols=84  Identities=35%  Similarity=0.413  Sum_probs=76.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-----------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHH
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-----------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYE  156 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-----------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~  156 (173)
                      ..++|+|.|.++.+|||+|.||.           ..++||..|.++++|+++| |++||+|++|||+++.+++|++++.+
T Consensus         9 ~~~~V~l~k~~~~~lG~~i~gG~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~t~~ea~~~   88 (111)
T d1ujua_           9 GLRELCIQKAPGERLGISIRGGARGHAGNPRDPTDEGIFISKVSPTGAAGRDGRLRVGLRLLEVNQQSLLGLTHGEAVQL   88 (111)
T ss_dssp             SSSCEEEECCTTCCCCEEEECCSSSSCSCSSCTTCCCCEEEEECTTSHHHHHSSCCTTCBCCBBSSCBCTTSCHHHHHHH
T ss_pred             CeEEEEEEeCCCCccCEEEeccccCCcccccccCCCCEEEEEECCCChHHHcCCCccceeeeeeCCcccCCCCHHHHHHH
Confidence            45789999988789999999864           2589999999999999977 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEECC
Q psy7774         157 LAKPADKVTVLAHSDT  172 (173)
Q Consensus       157 l~~~g~~v~l~v~r~~  172 (173)
                      |+.+++.|+|+|.|..
T Consensus        89 lk~~~~~v~L~V~r~~  104 (111)
T d1ujua_          89 LRSVGDTLTVLVCDGF  104 (111)
T ss_dssp             HSSCSSEEEECCCCCC
T ss_pred             HHcCCCeEEEEEEECC
Confidence            9999999999998763

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.6e-18  Score=109.62  Aligned_cols=76  Identities=22%  Similarity=0.298  Sum_probs=70.5

Q ss_pred             EEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774          93 LMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD  171 (173)
Q Consensus        93 v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~  171 (173)
                      |+|.|.. .+|||++.++  .++||..|.+||||+++||+.||+|++|||.++.+++|.+++..++++++.++|.+.|.
T Consensus         1 v~l~r~~-~g~Gf~l~~~--~~~~V~~V~~gspA~~aGL~~GD~Il~Vng~~v~~~~~~~v~~~i~~~~~~v~L~v~R~   76 (77)
T d2f5ya1           1 ITIPRGK-DGFGFTICCD--SPVRVQAVDSGGPAERAGLQQLDTVLQLNERPVEHWKCVELAHEIRSCPSEIILLVWRM   76 (77)
T ss_dssp             EEEECBT-TBTSEEEECS--SSCEEEEECTTSHHHHHTCCTTCEEEEETTEECTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             CEEecCC-CcccEEEECC--CCEEEEEECCCCHHHHcCCCCCCEEEEECCEECCCCCHHHHHHHHHCCCCEEEEEEEEE
Confidence            5788877 7899999964  46999999999999999999999999999999999999999999999999999999984

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=2.3e-18  Score=116.85  Aligned_cols=84  Identities=18%  Similarity=0.263  Sum_probs=76.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccC---------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHh
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN---------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELA  158 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~---------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~  158 (173)
                      +.++|+|.|.+..+|||+|.++.         ..++||..|.++++|+++| |++||+|++|||+++.+++|++++.+|+
T Consensus        10 ~~~~V~l~r~~~~~lGf~l~~g~~~~~~~~~~~~~~~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ev~~ll~   89 (114)
T d1uewa_          10 QTSDVVIHRKENEGFGFVIISSLNRPESGSTITVPHKIGRIIDGSPADRCAKLKVGDRILAVNGQSIINMPHADIVKLIK   89 (114)
T ss_dssp             CCEEEEEECCTTSCCCEEEECCCCSCCSSCCSCCSCEEEEECTTCTTGGGSSCCTTCBEEEETTBCTTTSCHHHHHHHHH
T ss_pred             eeEEEEEEeCCCCCCCEEEeeecccCCCCccCcCCEEEEEECCCCHHHhhccCCcCcEEeEeCCcccCCCcHHHHHHHHH
Confidence            57889999988789999999864         2369999999999999976 9999999999999999999999999999


Q ss_pred             CCCCeEEEEEEECC
Q psy7774         159 KPADKVTVLAHSDT  172 (173)
Q Consensus       159 ~~g~~v~l~v~r~~  172 (173)
                      +.+..|+|+|.|..
T Consensus        90 ~~~~~v~l~V~r~~  103 (114)
T d1uewa_          90 DAGLSVTLRIIPQE  103 (114)
T ss_dssp             HTTTEEEEEECCCS
T ss_pred             cCCCeEEEEEEeCC
Confidence            99999999998864

>d2fnea1 b.36.1.1 (A:1955-2042) Multiple PDZ domain protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Multiple PDZ domain protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=7.9e-19  Score=113.86  Aligned_cols=80  Identities=33%  Similarity=0.512  Sum_probs=72.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPAD  162 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~  162 (173)
                      +.++|+|.|.+ .+|||+|.++.     ..++||.+|.++|+|+++| |++||+|++|||+++.+++|++++.+++++++
T Consensus         2 ~~~~V~l~K~~-~~lG~~i~~g~~~~~~~~~i~I~~v~~~g~A~~~g~l~~GD~Il~INg~~v~~~~~~~v~~~l~~~~~   80 (88)
T d2fnea1           2 QCKSITLERGP-DGLGFSIVGGYGSPHGDLPIYVKTVFAKGAASEDGRLKRGDQIIAVNGQSLEGVTHEEAVAILKRTKG   80 (88)
T ss_dssp             EEEEEEECCBT-TBTSEEEEEEEEETTEEEEEEEEEECTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCS
T ss_pred             eEEEEEEEeCC-CccCEEEEeccCCCCCCcCEEEEEEcCCChHHHhCCCcCCcEEEEECCEECCCCCHHHHHHHHHcCCC
Confidence            46889999876 68999998764     3479999999999999966 99999999999999999999999999999999


Q ss_pred             eEEEEEE
Q psy7774         163 KVTVLAH  169 (173)
Q Consensus       163 ~v~l~v~  169 (173)
                      .++|+|.
T Consensus        81 ~v~L~Vl   87 (88)
T d2fnea1          81 TVTLMVL   87 (88)
T ss_dssp             SEEEEEE
T ss_pred             cEEEEEE
Confidence            9999874

>d1i16a_ b.36.1.2 (A:) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=2.5e-18  Score=119.24  Aligned_cols=83  Identities=23%  Similarity=0.338  Sum_probs=73.6

Q ss_pred             CCEEEEEEccCCCcccEEEEccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCC-
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPA-  161 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g-  161 (173)
                      +.+.|.|.|.. .+|||+|.||.     ..++||..|.+||+|+++| |++||+|++|||.++.+++|++++.+|+..+ 
T Consensus        29 ~~~~V~l~k~~-~glG~~i~gg~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~~~~~t~~eav~~l~~~~~  107 (130)
T d1i16a_          29 TVCTVTLEKMS-AGLGFSLEGGKGSLHGDKPLTINRIFKGAASEQSETVQPGDEILQLGGTAMQGLTRFEAWNIIKALPD  107 (130)
T ss_dssp             EEEEEEEETTS-SSTTEEEECCCCCSSSCCCCEEEEECSSCCCSSSCCCCTTCCEEECSSCBGGGSCHHHHHHHHHTSCS
T ss_pred             eEEEEEEEeCC-CccCEEEeeccCCCCCCCCEEEEEECCCChHHhcCCcccCceeeeECCeecCCCcHHHHHHHHHcCCC
Confidence            45778899876 78999999875     3589999999999999977 9999999999999999999999999999764 


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      ..|.|+|+|..
T Consensus       108 ~~v~l~v~r~~  118 (130)
T d1i16a_         108 GPVTIVIRRKS  118 (130)
T ss_dssp             SEEEEEEEEES
T ss_pred             CeEEEEEEcCC
Confidence            58999998863

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=1.1e-18  Score=116.60  Aligned_cols=82  Identities=21%  Similarity=0.319  Sum_probs=75.1

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--------CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--------AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--------~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      ++++|+|.|..+.+|||+|.++.        ..++||..|.+||+|+ ++|++||+|++|||+++.+++|.+++.+|+.+
T Consensus         7 e~~tV~l~k~~~~~~G~~i~gg~~~~~~~~~~~~i~V~~v~~gs~A~-~~L~~GD~Il~INg~~v~~~~~~ev~~ll~~~   85 (104)
T d2csja1           7 EQYTVTLQKDSKRGFGIAVSGGRDNPHFENGETSIVISDVLPGGPAD-GLLQENDRVVMVNGTPMEDVLHSFAVQQLRKS   85 (104)
T ss_dssp             EEEEEEEECCSSSTTCEEEECCSSCCCCSSCCCBCEEEEECTTSSHH-HHBCTTCEEEEESSCBCBTCCHHHHHHHHHHS
T ss_pred             ccEEEEEEeCCCCCcCEEEEcccCCCccccCCCCEEEEEECCCChhh-cCCCCCCEEEEECCEECCCCCHHHHHHHHHcC
Confidence            56889999988789999999875        2479999999999997 67999999999999999999999999999999


Q ss_pred             CCeEEEEEEEC
Q psy7774         161 ADKVTVLAHSD  171 (173)
Q Consensus       161 g~~v~l~v~r~  171 (173)
                      +..+.|+|+|+
T Consensus        86 ~~~v~l~V~R~   96 (104)
T d2csja1          86 GKIAAIVVKRP   96 (104)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCEEEEEEEeC
Confidence            99999999986

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=3.8e-18  Score=113.25  Aligned_cols=83  Identities=29%  Similarity=0.458  Sum_probs=73.1

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~  165 (173)
                      ..++.|.|.+.++.+|||+|.+|.  ..++||..|.++++|+++||+.||+|++|||+++.+++|.+++.+|+.++. +.
T Consensus         7 ~~~~~v~i~~~~~~glG~~i~~g~~~~~gi~V~~V~~gs~A~~~gL~~GD~Il~VNg~~v~~~~~~~v~~~lk~~~~-~~   85 (101)
T d1x5na1           7 NKEKKVFISLVGSRGLGCSISSGPIQKPGIFISHVKPGSLSAEVGLEIGDQIVEVNGVDFSNLDHKEAVNVLKSSRS-LT   85 (101)
T ss_dssp             CSSEEEEECCCSSCCCCEEEEECCSSSCSEEEEEECTTSTTTTTTCCTTCEEEEETTEETTSCCTTHHHHHHHHCSS-EE
T ss_pred             CccEEEEEEeeCCCcccEEEeccCCCCCCEEEEEECCCChHHhCCCCcccEEEEECCEECCCCCHHHHHHHHhCCCC-EE
Confidence            367899998877799999999876  458999999999999999999999999999999999999999999987764 66


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      +++.+.
T Consensus        86 l~v~~~   91 (101)
T d1x5na1          86 ISIVAA   91 (101)
T ss_dssp             EEECSS
T ss_pred             EEEEEC
Confidence            666554

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=4.5e-18  Score=115.89  Aligned_cols=85  Identities=28%  Similarity=0.334  Sum_probs=77.1

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC---CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCe
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN---AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADK  163 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~---~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~  163 (173)
                      ..|+.|+|.|.++.+|||.|.++.   ..++||..|.++++|++.| |++||+|++|||.++.+++|++++.+|+.++..
T Consensus        14 ~~p~~V~l~k~~~~~lGi~i~~~~~~~~~gi~V~~I~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~~v~~~l~~~~~~   93 (117)
T d1v62a_          14 SGPLMVEIVKTPGSALGISLTTTSLRNKSVITIDRIKPASVVDRSGALHPGDHILSIDGTSMEHCSLLEATKLLASISEK   93 (117)
T ss_dssp             SSSEEEEEECCTTCCCCCEEEEECCSSSCEEEEEECCTTSHHHHHTCCCTTCBEEEETTEETTSCCHHHHHHHHHSCSSE
T ss_pred             CCCEEEEEEcCCCCCcCEEEEeeccCCCCCEEEEEECCCCHHHHcCCCChhheeeeECCEecCCCCHHHHHHHHHcCCCc
Confidence            368999999987789999999765   4589999999999999965 999999999999999999999999999999999


Q ss_pred             EEEEEEECC
Q psy7774         164 VTVLAHSDT  172 (173)
Q Consensus       164 v~l~v~r~~  172 (173)
                      ++|+|.|..
T Consensus        94 v~l~v~~~~  102 (117)
T d1v62a_          94 VRLEILPVP  102 (117)
T ss_dssp             EEEEECCBT
T ss_pred             EEEEEEECC
Confidence            999997753

>d2f0aa1 b.36.1.1 (A:251-342) Segment polarity protein dishevelled homolog Dvl-2 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Segment polarity protein dishevelled homolog Dvl-2
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=99.75  E-value=1.1e-18  Score=113.98  Aligned_cols=81  Identities=23%  Similarity=0.386  Sum_probs=71.6

Q ss_pred             EEEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC---CCC
Q psy7774          91 RFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK---PAD  162 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~---~g~  162 (173)
                      .+|+|.+..+.+|||++.|+.    +.++||..|.+||+|+++| |++||+|++|||.++.+++|++|+.+|+.   ...
T Consensus         3 ~tV~l~k~~~~~lGi~i~gg~~~~~~~~i~I~~I~~gg~A~~~G~L~~GD~Il~VNg~~l~~~s~~eav~llk~~~~~~~   82 (92)
T d2f0aa1           3 ITVTLNMEKYNFLGISIVGQSNERGDGGIYIGSIMKGGAVAADGRIEPGDMLLQVNDINFENMSNDDAVRVLRDIVHKPG   82 (92)
T ss_dssp             EEEEECHHHHCSCCEEEECCCCTTSCCCEEEEEEBTTSHHHHHCCCCTTCEEEEETTEECTTCCHHHHHHHHHHHHHSSS
T ss_pred             EEEEEEeCCCCccCEEEEccCCCCCCCCEEEEEECCCCcHHHcCCCCCccEEEEECCEECCCCCHHHHHHHHHhccCCCC
Confidence            568888876679999999875    3599999999999999976 99999999999999999999999999975   356


Q ss_pred             eEEEEEEEC
Q psy7774         163 KVTVLAHSD  171 (173)
Q Consensus       163 ~v~l~v~r~  171 (173)
                      .++|+|.|.
T Consensus        83 ~v~L~V~R~   91 (92)
T d2f0aa1          83 PIVLTVAKL   91 (92)
T ss_dssp             CEEEEEECC
T ss_pred             cEEEEEEeC
Confidence            799999885

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.2e-18  Score=114.84  Aligned_cols=81  Identities=25%  Similarity=0.392  Sum_probs=71.1

Q ss_pred             CCEEEEEEccCCCcccEEEEccC---CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN---AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~---~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      ..+.+.|.|..+.+|||+|.||.   ..++||..|.+||+|+++| |++||+|++|||.++.+++|++++.+|+.++..+
T Consensus         8 ~~~~v~l~k~~~~~lG~~i~gg~~~~~~~i~V~~v~~gs~A~~~g~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~~   87 (107)
T d1x6da1           8 GIHVTILHKEEGAGLGFSLAGGADLENKVITVHRVFPNGLASQEGTIQKGNEVLSINGKSLKGTTHHDALAILRQAREPR   87 (107)
T ss_dssp             TEEEEEEECCTTSCCSEEEECCSSSSCSSCEEEEECSSSHHHHHTSSCTTCBCCEETTEECSSCCHHHHHHHHHHTTSSS
T ss_pred             CcEEEEEEcCCCCccCEEEeeccCCCCCCEEEEEECCCCHHHHcCCCCcCCEEEEECCEecCCCCHHHHHHHHHcCCCCE
Confidence            57889999888789999999875   4589999999999999976 9999999999999999999999999998776655


Q ss_pred             EEEEE
Q psy7774         165 TVLAH  169 (173)
Q Consensus       165 ~l~v~  169 (173)
                      .+++.
T Consensus        88 ~l~v~   92 (107)
T d1x6da1          88 QAVIV   92 (107)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            55543

>d1rzxa_ b.36.1.1 (A:) GTPase-binding domain of the cell polarity protein par6 (Par-6B) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: GTPase-binding domain of the cell polarity protein par6 (Par-6B)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.74  E-value=6.2e-18  Score=111.67  Aligned_cols=82  Identities=20%  Similarity=0.366  Sum_probs=72.9

Q ss_pred             CEEEEEEccC-CCcccEEEEccC-----------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHH
Q psy7774          90 PRFLMIETRK-CSNLGISLVGGN-----------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYE  156 (173)
Q Consensus        90 ~~~v~l~~~~-~~~lG~~l~gg~-----------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~  156 (173)
                      .|.|.|.|.. ..+|||++.+|.           ..++||..|.+||+|+++| |++||+|++|||.++.+++|++++.+
T Consensus         3 ~r~V~L~k~~~~~~lG~~i~gg~~~~~~~~~~~~~~gi~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~~~~~~~~~   82 (98)
T d1rzxa_           3 HRRVRLLKHGSDKPLGFYIRDGTSVRVTASGLEKQPGIFISRLVPGGLAESTGLLAVNDEVIEVNGIEVAGKTLDQVTDM   82 (98)
T ss_dssp             CEEEEEECCCSSSCCSEEEEEEEEEECCSSSCEEEEEEEEEEECTTCHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHH
T ss_pred             cEEEEEEECCCCCcccEEEecccCCCccccCccCCCCEEEEEECCCChHHhcCcCCCCcEEeeECCEECCCCCHHHHHHH
Confidence            5788888865 468999998764           2379999999999999977 99999999999999999999999999


Q ss_pred             HhCCCCeEEEEEEEC
Q psy7774         157 LAKPADKVTVLAHSD  171 (173)
Q Consensus       157 l~~~g~~v~l~v~r~  171 (173)
                      |+.+++.++|+|+..
T Consensus        83 l~~~~~~v~l~v~p~   97 (98)
T d1rzxa_          83 MVANSSNLIITVKPA   97 (98)
T ss_dssp             HHHTCTEEEEEEECC
T ss_pred             HHcCCCeEEEEEEeC
Confidence            999999999998753

>d1ujda_ b.36.1.1 (A:) Hypothetical protein KIAA0559 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA0559
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=8.6e-18  Score=114.42  Aligned_cols=84  Identities=27%  Similarity=0.471  Sum_probs=72.3

Q ss_pred             CEEEEEEccC------CCcccEEEEccC-------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHH
Q psy7774          90 PRFLMIETRK------CSNLGISLVGGN-------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAY  155 (173)
Q Consensus        90 ~~~v~l~~~~------~~~lG~~l~gg~-------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~  155 (173)
                      ...+.+.+..      +.+|||+|.||.       ..++||..|.++++|+++| |++||+|++|||+++.+++|++++.
T Consensus        13 ~~~v~l~r~~~~~~~~g~glG~~i~gg~~~~~~~~~~gi~I~~V~~gs~A~~~G~L~~GD~Il~INg~~v~~~s~~e~~~   92 (117)
T d1ujda_          13 HARIKITRDSKDHTVSGNGLGIRIVGGKEIPGHSGEIGAYIAKILPGGSAEQTGKLMEGMQVLEWNGIPLTSKTYEEVQS   92 (117)
T ss_dssp             EEEEEECCCSSSSCSSCCSCSEEEEEEEECSSSSSCEEEEEEEECTTCHHHHHSSCCTTCEEEEETTEECTTCCHHHHHH
T ss_pred             ceeEEEEecccccccCCcccCEEEeccccCCCCCCCcCEEEEEECCCCHHHHcCCCCCCCEEEEECCEECCCCcHHHHHH
Confidence            3556666543      367999999875       2379999999999999977 9999999999999999999999999


Q ss_pred             HHhCCCCeEEEEEEECCC
Q psy7774         156 ELAKPADKVTVLAHSDTN  173 (173)
Q Consensus       156 ~l~~~g~~v~l~v~r~~~  173 (173)
                      +|++++..+.|+|+|..+
T Consensus        93 ~i~~~~~~v~l~v~r~~~  110 (117)
T d1ujda_          93 IISQQSGEAEICVRLDLN  110 (117)
T ss_dssp             HHSCCSSCEEEEEESSCC
T ss_pred             HHHcCCCeEEEEEEECCC
Confidence            999999999999998753

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=9.5e-19  Score=116.68  Aligned_cols=84  Identities=25%  Similarity=0.375  Sum_probs=76.6

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      .+.++|.|.|.. .+|||+|.++.  ..++||..|.++++|+++| |++||+|++|||.++.+++|.+++.+|+.++..+
T Consensus        10 ~e~~~v~l~k~~-~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~s~~ev~~~l~~~~~~v   88 (103)
T d1wfva_          10 FDYFTVDMEKGA-KGFGFSIRGGREYKMDLYVLRLAEDGPAIRNGRMRVGDQIIEINGESTRDMTHARAIELIKSGGRRV   88 (103)
T ss_dssp             SCCEECCEECCT-TSSSBCCEEETTTTEEEECCCBCTTSHHHHHCSSCTTCEEEEETTEECSSCCHHHHHHHHHHHCSEE
T ss_pred             ceEEEEEEEeCC-CccCEEEEeeccCCCCEEEEEEcCCChHHhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHcCCCEE
Confidence            477889999876 78999999876  4479999999999999977 9999999999999999999999999999999999


Q ss_pred             EEEEEECC
Q psy7774         165 TVLAHSDT  172 (173)
Q Consensus       165 ~l~v~r~~  172 (173)
                      .|+|+|..
T Consensus        89 ~l~v~R~~   96 (103)
T d1wfva_          89 RLLLKRGT   96 (103)
T ss_dssp             CEEEECTT
T ss_pred             EEEEEECC
Confidence            99999864

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=3.6e-18  Score=113.86  Aligned_cols=82  Identities=16%  Similarity=0.258  Sum_probs=72.3

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC--CCe
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP--ADK  163 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~--g~~  163 (173)
                      +.++|+|.|.. .+|||+|.++.  ..++||..|.++++|+++| |++||+|++|||+++.+++|++++.+|+.+  +..
T Consensus         9 ~~~~V~l~k~~-~glG~~i~gg~~~~~~i~V~~v~~g~~A~~~G~L~~GD~Il~VNg~~v~~~t~~e~~~~l~~~~~~~~   87 (103)
T d1uepa_           9 KELDVHLRRME-SGFGFRILGGDEPGQPILIGAVIAMGSADRDGRLHPGDELVYVDGIPVAGKTHRYVIDLMHHAARNGQ   87 (103)
T ss_dssp             EEECCEEESSS-SSCCEEECCCCSTTSCCBEEEECTTSTTGGGTCCCTTCEEEEETTEECTTSCHHHHHHHHHHHHHHTE
T ss_pred             EEEEEEEEeCC-ceEeEEEEecccCCCcEEEEEECCCChHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCE
Confidence            44668888876 78999999876  4579999999999999976 999999999999999999999999999865  468


Q ss_pred             EEEEEEEC
Q psy7774         164 VTVLAHSD  171 (173)
Q Consensus       164 v~l~v~r~  171 (173)
                      |+|+++|.
T Consensus        88 v~l~v~r~   95 (103)
T d1uepa_          88 VNLTVRRK   95 (103)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEeC
Confidence            99999885

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.73  E-value=8.8e-19  Score=118.35  Aligned_cols=82  Identities=24%  Similarity=0.298  Sum_probs=72.3

Q ss_pred             CCCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCC-CCeEE
Q psy7774          87 SGEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKP-ADKVT  165 (173)
Q Consensus        87 ~~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~-g~~v~  165 (173)
                      +..||.|+|.|.. .+|||+|.|+  .++||..|.++++|+++||+.||+|++|||+++.+++|++++.+|+.+ +..++
T Consensus        13 ~~~pr~v~l~k~~-~g~Gf~i~g~--~~v~V~~V~~~spA~~~GL~~GD~Il~INg~~v~~~~~~ev~~llk~~~~~~v~   89 (111)
T d1vaea_          13 WSPPRGIHFTVEE-GDLGFTLRGN--TPVQVHFLDPHCSASLAGAKEGDYIVSIQGVDCKWLTVSEVMKLLKSFGGEEVE   89 (111)
T ss_dssp             ECCCCCCCEECCS-SCCSCCEESS--SSCEECCCCTTSSHHHHHCCTTCEEEEETTEECSSCCHHHHHHHHHHTTTSEEC
T ss_pred             CCCCEEEEEEECC-CccCEEEECC--ccEEEEEEcCCChHHhcccCcccEEEEECCEEcCCCCHHHHHHHHHcCCCCeEE
Confidence            4567889999977 6899999875  469999999999999988999999999999999999999999999865 56888


Q ss_pred             EEEEEC
Q psy7774         166 VLAHSD  171 (173)
Q Consensus       166 l~v~r~  171 (173)
                      |+|.+.
T Consensus        90 l~v~~~   95 (111)
T d1vaea_          90 MKVVSL   95 (111)
T ss_dssp             EEEECE
T ss_pred             EEEECC
Confidence            887653

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.1e-17  Score=112.94  Aligned_cols=77  Identities=21%  Similarity=0.216  Sum_probs=67.9

Q ss_pred             CEEEEEEccCCCcccEEEEccC-CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEE
Q psy7774          90 PRFLMIETRKCSNLGISLVGGN-AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTV  166 (173)
Q Consensus        90 ~~~v~l~~~~~~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l  166 (173)
                      ..+|.|.|....+|||++.++. ..++||..|.+||+|+++| |++||+|++|||.++.+++|++++.+|+.+...+.+
T Consensus         2 i~~V~l~k~~~~glG~~i~~~~~~~~i~I~~v~~ggpA~~~G~L~~GD~Il~INg~~v~~~s~~e~~~~l~~~~~~~~~   80 (112)
T d1qaua_           2 VISVRLFKRKVGGLGFLVKERVSKPPVIISDLIRGGAAEQSGLIQAGDIILAVNDRPLVDLSYDSALEVLRGIASETHV   80 (112)
T ss_dssp             EEEEEEECBTTTBTSEEEEECSSSSCEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTSCHHHHHHHHHHSCSSSEE
T ss_pred             eEEEEEEECCCCcEeEEEEeecCCCCEEEEEEcCCCHHHHhhhcccccEeEEECCcCccCCCHHHHHHHHHcCCCCcEE
Confidence            3678999988889999999875 5689999999999999988 999999999999999999999999999876544333

>d1x45a1 b.36.1.1 (A:8-92) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.3e-17  Score=106.12  Aligned_cols=77  Identities=22%  Similarity=0.326  Sum_probs=66.3

Q ss_pred             EEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCC--eE
Q psy7774          92 FLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPAD--KV  164 (173)
Q Consensus        92 ~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~--~v  164 (173)
                      .|.|.|.++.+|||++.++.    ..++||..|.++|+|+++| |++||+|++|||.++.+++|++++.+|+.+..  .+
T Consensus         1 eV~l~k~~g~~LGi~i~~~~~~~~~~~i~I~~v~~gg~A~~~G~l~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~v   80 (85)
T d1x45a1           1 DVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKLNIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRV   80 (85)
T ss_dssp             EEEEECCTTSCCCEEEECCTTTSSSCCCEEEEECTTCHHHHHCSCCTTCEEEEETTEECTTCCHHHHHHHHHTTTTCSEE
T ss_pred             CeEEEeCCCCccCEEEEeCCCCCCCCCEEEEEeCCCCHHHHcCCCCcCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEE
Confidence            47889988889999997432    3589999999999999976 99999999999999999999999999997655  45


Q ss_pred             EEEE
Q psy7774         165 TVLA  168 (173)
Q Consensus       165 ~l~v  168 (173)
                      +|.|
T Consensus        81 ~L~V   84 (85)
T d1x45a1          81 KLNI   84 (85)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=5.2e-17  Score=111.37  Aligned_cols=82  Identities=17%  Similarity=0.216  Sum_probs=73.5

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC--CCe
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP--ADK  163 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~--g~~  163 (173)
                      +...++|.|.. .+|||++.++.  ..++||..|.++++|+++| |++||+|++|||+++.+++|++++.+|+..  +..
T Consensus        19 ~~~~v~l~k~~-~glG~~i~gg~~~~~~i~I~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~~t~~eav~~l~~~~~g~~   97 (123)
T d1ueqa_          19 TFLSTTLKKSN-MGFGFTIIGGDEPDEFLQVKSVIPDGPAAQDGKMETGDVIVYINEVCVLGHTHADVVKLFQSVPIGQS   97 (123)
T ss_dssp             EEEEEEEECCT-TSCSEEEECCSSSSCCCEEEEECTTSHHHHTSCCCTTCEEEEETTEECTTSCHHHHHHHHHTSCTTCE
T ss_pred             eEEEEEEEECC-CeeCEEEEeecCCCCCEEEEEECCCCHHHHcCCCeeCCEEEEECCEECCCCCHHHHHHHHHcCCCCCE
Confidence            55678888876 79999999876  5689999999999999976 999999999999999999999999999864  688


Q ss_pred             EEEEEEEC
Q psy7774         164 VTVLAHSD  171 (173)
Q Consensus       164 v~l~v~r~  171 (173)
                      |.|+|.|.
T Consensus        98 v~L~v~R~  105 (123)
T d1ueqa_          98 VNLVLCRG  105 (123)
T ss_dssp             EEEEEEES
T ss_pred             EEEEEEcC
Confidence            99999885

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.7e-18  Score=111.31  Aligned_cols=83  Identities=39%  Similarity=0.569  Sum_probs=72.2

Q ss_pred             CCCEEEEEEccC-CCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeE
Q psy7774          88 GEPRFLMIETRK-CSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~~-~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v  164 (173)
                      .+.+.|.|.|.+ ..+|||.|.++.  ..++||..|.++++|+++||+.||+|++|||+++.+++|.+++.+|+..+. +
T Consensus         7 ~~~~~v~l~r~~~~~glG~~i~gg~~~~~~i~V~~v~~gg~A~~~gL~~GD~Il~ING~~v~~~~~~~v~~ll~~~~~-~   85 (101)
T d1ueza_           7 GEVRLVSLRRAKAHEGLGFSIRGGSEHGVGIYVSLVEPGSLAEKEGLRVGDQILRVNDKSLARVTHAEAVKALKGSKK-L   85 (101)
T ss_dssp             CCCEEECCCCCCTTTCSSEEEEECTTTTCCEEEEEECTTSHHHHHTCCSSCCEEEETTEECSSCCHHHHHHHSSSSSS-C
T ss_pred             CCEEEEEEEECCCCCeeCEEEEecccCCCCEEEEEECCCChHHhcCCCCCcEEEEECCEECCCCCHHHHHHHHhcCCC-E
Confidence            367889998865 468999999876  458999999999999998999999999999999999999999999987764 6


Q ss_pred             EEEEEEC
Q psy7774         165 TVLAHSD  171 (173)
Q Consensus       165 ~l~v~r~  171 (173)
                      .|+|.|.
T Consensus        86 ~l~V~~~   92 (101)
T d1ueza_          86 VLSVYSA   92 (101)
T ss_dssp             CEEECCC
T ss_pred             EEEEEEC
Confidence            6777664

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=2.6e-17  Score=104.44  Aligned_cols=75  Identities=24%  Similarity=0.398  Sum_probs=67.2

Q ss_pred             EEEEEEcc-CCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEE
Q psy7774          91 RFLMIETR-KCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAH  169 (173)
Q Consensus        91 ~~v~l~~~-~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~  169 (173)
                      .++.+.+. ...+|||++.++     +|..|.+||+|+++||+.||+|++|||.++.+++|++++.+|+.+++.++|++.
T Consensus         2 ~tv~l~r~~~~~~lGf~i~~g-----~V~~V~~gs~A~~~gL~~GD~Il~INg~~v~~~~~~~~~~ll~~~~~~v~l~vi   76 (79)
T d1y7na1           2 TTVLIRRPDLRYQLGFSVQNG-----IICSLMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTM   76 (79)
T ss_dssp             EEEEEEESSTTSCCCEEEETT-----EEEEECTTSHHHHHTCCSSCEEEEETTEECTTSCHHHHHHHHHHCCEEEEEEEE
T ss_pred             EEEEEEcCCCCCCcCEEEECC-----EEEEEcCCCHHHHCCCCCCCEEEEECCEEeCCCCHHHHHHHHHcCCCEEEEEEE
Confidence            45677764 357999999875     799999999999999999999999999999999999999999999999999986


Q ss_pred             E
Q psy7774         170 S  170 (173)
Q Consensus       170 r  170 (173)
                      .
T Consensus        77 P   77 (79)
T d1y7na1          77 P   77 (79)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1wi4a1 b.36.1.1 (A:8-103) Syntaxin binding protein 4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntaxin binding protein 4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=2.4e-17  Score=108.37  Aligned_cols=80  Identities=23%  Similarity=0.422  Sum_probs=68.0

Q ss_pred             CCEEEEEEccCCCcccEEEEccC----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC---
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP---  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~---  160 (173)
                      +.+.+++.+.  .+|||+|.||.    ..++||..|.+||+|+++| |+.||+|++|||+++.+++|++++.+|+++   
T Consensus         8 ~~~~v~~~~~--~glG~~i~gg~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~ea~~~l~~~~~~   85 (96)
T d1wi4a1           8 AFRVITVTKE--TGLGLKILGGINRNEGPLVYIHEVIPGGDCYKDGRLKPGDQLVSINKESMIGVSFEEAKSIITRAKLR   85 (96)
T ss_dssp             TEEEEEECCS--SCCCEEEEECSSSSSCSSEEEEEECTTSHHHHHCSCCTTCBEEEETTSCCTTCCHHHHHHHHHHSCCS
T ss_pred             cEEEEEecCC--CccCEEEEeccCCCCCCCEEEEEEeCCCccccCCCCCCCCEEEEECCEECCCCCHHHHHHHHHhccCC
Confidence            4456666553  57999999875    3579999999999999977 999999999999999999999999999754   


Q ss_pred             -CCeEEEEEEE
Q psy7774         161 -ADKVTVLAHS  170 (173)
Q Consensus       161 -g~~v~l~v~r  170 (173)
                       +..+.|.+.|
T Consensus        86 ~~~~vel~~~R   96 (96)
T d1wi4a1          86 SESPWEIAFIR   96 (96)
T ss_dssp             SSSCEEEEEEC
T ss_pred             CCCeEEEEEEC
Confidence             5778888875

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.71  E-value=5.7e-18  Score=112.84  Aligned_cols=80  Identities=19%  Similarity=0.290  Sum_probs=71.3

Q ss_pred             EEEEEEccCCCcccEEEEccCC--CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEE
Q psy7774          91 RFLMIETRKCSNLGISLVGGNA--VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLA  168 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~~--~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v  168 (173)
                      ..|++..  ..+|||+|.++.+  .++||..|.++++|++++|++||+|++|||+++.+++|++++.+|+.+++.|.|+|
T Consensus         7 ~~v~~~g--~~g~Gf~i~gg~d~~~~v~V~~v~~g~~a~~~~L~~GD~Il~INg~~v~~~t~~eav~li~~~~~~v~L~v   84 (103)
T d1wf7a_           7 GSVSLVG--PAPWGFRLQGGKDFNMPLTISSLKDGGKASQAHVRIGDVVLSIDGISAQGMTHLEAQNKIKACTGSLNMTL   84 (103)
T ss_dssp             EEEEEES--SSCCSCCEEEETTTTEEEEECCCCTTCHHHHTTCCTTCBEEEETTEECSSCCHHHHHHHHHHCSSEEEEEE
T ss_pred             eEEEEEC--CCCccEEEEcccCCCCCEEEEecCCCChHHHCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCeEEEEE
Confidence            4466643  3699999999873  57999999999999999999999999999999999999999999999999999999


Q ss_pred             EECC
Q psy7774         169 HSDT  172 (173)
Q Consensus       169 ~r~~  172 (173)
                      +|..
T Consensus        85 ~R~~   88 (103)
T d1wf7a_          85 QRAS   88 (103)
T ss_dssp             CCCS
T ss_pred             EECC
Confidence            8864

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=5.8e-17  Score=108.42  Aligned_cols=83  Identities=17%  Similarity=0.346  Sum_probs=72.2

Q ss_pred             CCEEEEEEccCCCcccEEEEccC--CCCEEEEEecCCCccccc--CCCCCCEEEEECCEecCCCCHHHHHHHHhC----C
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGN--AVGIYVHSVQSGSLGYSA--GLRTGDRILEYNGTDLRAATAEEAAYELAK----P  160 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~--gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~----~  160 (173)
                      ..+.|.+.+....+|||++.|+.  ..++||..|.++|+|+++  +|+.||+|++|||.++.+++|++++.+|+.    .
T Consensus         8 ~~~~v~l~~~~~g~lG~~l~gg~d~~~~i~V~~v~~g~~A~~~~g~L~~GD~Il~VNg~~v~~~~~~e~~~ll~~~~~~~   87 (106)
T d2cs5a1           8 NLVLIRMKPDENGRFGFNVKGGYDQKMPVIVSRVAPGTPADLCVPRLNEGDQVVLINGRDIAEHTHDQVVLFIKASCERH   87 (106)
T ss_dssp             CCEEEEECCCSSSCCSEEEEEEGGGTEEEEEEEECSSSTTTSSSSCCCTTCEEEEETTBCTTSSCHHHHHHHHHHHHHCC
T ss_pred             cEEEEEEEeCCCCCccEEEEeeecCCCCEEEEEEcCCCcchhccCCCCCCCEEEEECCEECCCCCHHHHHHHHHhCCCCC
Confidence            56789998887778999999876  457999999999999884  799999999999999999999999999975    3


Q ss_pred             CCeEEEEEEEC
Q psy7774         161 ADKVTVLAHSD  171 (173)
Q Consensus       161 g~~v~l~v~r~  171 (173)
                      ...+.|+++++
T Consensus        88 ~~~v~L~vrp~   98 (106)
T d2cs5a1          88 SGELMLLVRPN   98 (106)
T ss_dssp             SSCEEEEEECC
T ss_pred             CcEEEEEECCC
Confidence            45688888765

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.2e-17  Score=114.43  Aligned_cols=84  Identities=25%  Similarity=0.327  Sum_probs=71.3

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      .+.+.|+|.+.+..+|||+|.|+.      ..++||..|.++++|++.| |++||+|++|||+++.+++|++++.+|+.+
T Consensus        14 ~~~~ev~l~k~~~~glGf~i~gg~~~~~~~~~~i~V~~I~~gg~A~~~G~L~~GD~Il~INg~~v~~~~~~e~~~~lk~~   93 (122)
T d1v5qa_          14 TETTEVVLTADPVTGFGIQLQGSVFATETLSSPPLISYIEADSPAERCGVLQIGDRVMAINGIPTEDSTFEEANQLLRDS   93 (122)
T ss_dssp             EEEEEEEECCCSSSSSCEEEECCSCCSSSCSSCCEEEEECTTSHHHHSCCCCTTCCEEEETTEESSSSCHHHHHHHHHHH
T ss_pred             ceeEEEEEecCCCCccCEEEecccCCCccCCCCeEEEEECCCCHHHHhCCCCcCCEEEEECCCcCCCCCHHHHHHHHHcC
Confidence            356789999988789999999875      3579999999999999976 999999999999999999999999999876


Q ss_pred             CCe--EEEEEEEC
Q psy7774         161 ADK--VTVLAHSD  171 (173)
Q Consensus       161 g~~--v~l~v~r~  171 (173)
                      +..  +.|.+.|+
T Consensus        94 ~~~~~l~l~~~~~  106 (122)
T d1v5qa_          94 SITSKVTLEIEFD  106 (122)
T ss_dssp             TTTTCEEEEEEEE
T ss_pred             CCceEEEEEEecc
Confidence            544  55555543

>d1va8a1 b.36.1.1 (A:8-107) Maguk p55 subfamily member 5 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Maguk p55 subfamily member 5
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=9.1e-17  Score=106.31  Aligned_cols=80  Identities=21%  Similarity=0.335  Sum_probs=73.1

Q ss_pred             CCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEE
Q psy7774          89 EPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVL  167 (173)
Q Consensus        89 ~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~  167 (173)
                      ..+.|.+.|..+.+|||.+.++ ..++||..|.+||+|+++| |+.||+|++|||.++.++++++++.+|+..++.|+|+
T Consensus        18 ~i~~V~l~k~~~~~lG~~v~~~-~~~i~I~~V~~gs~A~~~g~l~~GD~Il~VNg~~v~~~~~~~~~~ll~~~~~~v~L~   96 (100)
T d1va8a1          18 TVKIVRIEKARDIPLGATVRNE-MDSVIISRIVKGGAAEKSGLLHEGDEVLEINGIEIRGKDVNEVFDLLSDMHGTLTFV   96 (100)
T ss_dssp             ECEEEEEEECTTCCCCEEEEEC-SSSEEEEEECTTSHHHHHTCCCTTCEEEEETTEECTTCCHHHHHHHHHHCCEEEEEE
T ss_pred             eEEEEEEEeCCCCCccEEEEec-CCCEEEEEECCCChhhhhcccCccCEEEEECCEEEcCCCHHHHHHHHHcCCCeEEEE
Confidence            4688999998878999999875 4589999999999999977 9999999999999999999999999999888899998


Q ss_pred             EE
Q psy7774         168 AH  169 (173)
Q Consensus       168 v~  169 (173)
                      |.
T Consensus        97 v~   98 (100)
T d1va8a1          97 LI   98 (100)
T ss_dssp             EE
T ss_pred             EE
Confidence            75

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1e-17  Score=111.50  Aligned_cols=73  Identities=21%  Similarity=0.282  Sum_probs=67.9

Q ss_pred             CCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         100 CSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       100 ~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      +.+|||+|.|+.  ..++||..|.++++|+.++|++||+|++|||+++.+++|++++.+|+.+++.|+|+|+|..
T Consensus        14 ~~~~Gf~l~gg~d~~~~i~V~~v~~g~~A~~~~L~~GD~Il~VNg~~v~~~~~~e~v~ll~~~~~~v~l~V~R~~   88 (103)
T d1v5la_          14 PAPWGFRLSGGIDFNQPLVITRITPGSKAAAANLCPGDVILAIDGFGTESMTHADAQDRIKAASYQLCLKIDRAE   88 (103)
T ss_dssp             SSCCSBCCEEETTTTEEEECSCBCTTSTTGGGTCCTTCBEEEETTEECSSCCHHHHHHHHTTCCSEEECEECCCT
T ss_pred             CCCCCEEEEeecCCCCCEEEEEccCCChHHhCCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            379999999986  4579999999999999999999999999999999999999999999999999999999864

>d2cssa1 b.36.1.1 (A:8-115) Regulating synaptic membrane exocytosis protein 1, RIMS1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulating synaptic membrane exocytosis protein 1, RIMS1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1e-17  Score=112.47  Aligned_cols=77  Identities=32%  Similarity=0.580  Sum_probs=66.9

Q ss_pred             EEccCCCcccEEEEccC-----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeEEE
Q psy7774          95 IETRKCSNLGISLVGGN-----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVTV  166 (173)
Q Consensus        95 l~~~~~~~lG~~l~gg~-----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v~l  166 (173)
                      +.+..+.+|||+|.||.     ..++||..|.+||+|+++| |++||+|++|||.++.+++|++++.+++.  .+..++|
T Consensus        24 ~~~~~~~~lG~~i~gg~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~VNg~~~~~~t~~ea~~~l~~~~~~~~v~l  103 (108)
T d2cssa1          24 MPKDSGALLGLKVVGGKMTDLGRLGAFITKVKKGSLADVVGHLRAGDEVLEWNGKPLPGATNEEVYNIILESKSEPQVEI  103 (108)
T ss_dssp             CSSSCSSCSSEEEEEEEECTTSSEEEEEEEECTTSHHHHTSCCCTTCEEEEESSCBCTTSCHHHHHHHHHHGGGCSCEEE
T ss_pred             EecCCCCCcCEEEeccCCCCCCCcCEEEEEECCCCchhhcCCCCcCCEEEEECCEECCCCCHHHHHHHHHhCCCCCEEEE
Confidence            33445689999999875     2389999999999999966 99999999999999999999999999985  4668999


Q ss_pred             EEEEC
Q psy7774         167 LAHSD  171 (173)
Q Consensus       167 ~v~r~  171 (173)
                      +|.|+
T Consensus       104 ~v~RP  108 (108)
T d2cssa1         104 IVSRP  108 (108)
T ss_dssp             EEEEC
T ss_pred             EEeCc
Confidence            99885

>d1x5ra1 b.36.1.1 (A:8-106) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=7.3e-17  Score=106.64  Aligned_cols=84  Identities=30%  Similarity=0.354  Sum_probs=73.1

Q ss_pred             CCCEEEEEEccCCCcccEEEEccC------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGN------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP  160 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~  160 (173)
                      .+.+.|.+.+.++.+|||+|.||.      ..++||..+.++|+|+++| |++||+|++|||.++.+++|++++.+|+++
T Consensus         7 ~e~~~V~l~~~~~~~lG~~i~gg~~~~~~~~~~~~V~~i~~~s~A~~~G~l~~GD~Il~INg~~v~~~t~~e~~~~lr~~   86 (99)
T d1x5ra1           7 TETTEVVLCGDPLSGFGLQLQGGIFATETLSSPPLVCFIEPDSPAERCGLLQVGDRVLSINGIATEDGTMEEANQLLRDA   86 (99)
T ss_dssp             SEEEEEEECCCTTTCCCEEEECCSCSSSBCSSCCEEEEECTTSHHHHTSSCCTTCBCSEETTEESTTSBHHHHHHHHHHH
T ss_pred             eeeEEEEEEcCCCCCcCEEEEEeccCCCCCCCCEEEEEECCCChHHHcCCCCCCCEEEEECCEECCCCCHHHHHHHHHhC
Confidence            356789999988789999999874      4589999999999999976 999999999999999999999999999854


Q ss_pred             --CCeEEEEEEEC
Q psy7774         161 --ADKVTVLAHSD  171 (173)
Q Consensus       161 --g~~v~l~v~r~  171 (173)
                        ...+.|.++++
T Consensus        87 ~~~~~l~l~v~~~   99 (99)
T d1x5ra1          87 ALAHKVVLEVEFD   99 (99)
T ss_dssp             HTTTCEEEEEEEC
T ss_pred             CCCCEEEEEEEcC
Confidence              56677777664

>d1wg6a_ b.36.1.1 (A:) Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Partitioning-defective 3-like protein, PAR3-L (RIKEN cDNA 2810455b10)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=4.7e-17  Score=112.17  Aligned_cols=81  Identities=23%  Similarity=0.468  Sum_probs=69.3

Q ss_pred             EEEEEccCCCcccEEEEccC------CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC----
Q psy7774          92 FLMIETRKCSNLGISLVGGN------AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP----  160 (173)
Q Consensus        92 ~v~l~~~~~~~lG~~l~gg~------~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~----  160 (173)
                      .|.+.+....+|||+|.|+.      ..++||..|.++++|+++| |+.||+|++|||+++.+++|.+++.+|+++    
T Consensus        28 ~v~l~~~~~~glG~~i~gg~~~~~~~~~~i~V~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~~~~e~~~~lr~a~~~~  107 (127)
T d1wg6a_          28 EIPLNDSGSAGLGVSLKGNKSRETGTDLGIFIKSIIHGGAAFKDGRLRMNDQLIAVNGETLLGKSNHEAMETLRRSMSME  107 (127)
T ss_dssp             EEECSSSTTTCCCCEEEEEEETTTTEEEEEEEEECCSSSSTHHHHTSCSCCBEEEETTEESTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEccCCCCcEeEEEEeecCCCCCCcCCEEEEEECCCCchhccCCCCCCCEEEeECCEECCCCCHHHHHHHHHhccccc
Confidence            34455555578999999865      2489999999999999966 999999999999999999999999999864    


Q ss_pred             ---CCeEEEEEEECC
Q psy7774         161 ---ADKVTVLAHSDT  172 (173)
Q Consensus       161 ---g~~v~l~v~r~~  172 (173)
                         ...|+|+|.|..
T Consensus       108 ~~~~~~V~L~V~R~~  122 (127)
T d1wg6a_         108 GNIRGMIQLVILRRS  122 (127)
T ss_dssp             HHHTCEEEEEEEECS
T ss_pred             CCCCCEEEEEEeeCC
Confidence               678999999864

>d1v6ba_ b.36.1.1 (A:) Harmonin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=5.6e-16  Score=105.38  Aligned_cols=81  Identities=25%  Similarity=0.303  Sum_probs=68.5

Q ss_pred             EEEEEEccCCCcccEEEEccCC---CCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC----CCC
Q psy7774          91 RFLMIETRKCSNLGISLVGGNA---VGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK----PAD  162 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~~---~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~----~g~  162 (173)
                      ..+...+.. .+|||.|.||.+   .++||..|.++|+|++.| |+.||+|++|||.++.+++|++++.+|++    .+.
T Consensus        19 v~~~~~~~~-~~lG~~i~gg~d~~~~~v~I~~v~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~~~~~~~~   97 (118)
T d1v6ba_          19 VRLLRIKKE-GSLDLALEGGVDSPVGKVVVSAVYEGGAAERHGGVVKGDEIMAINGKIVTDYTLAEAEAALQKAWNQGGD   97 (118)
T ss_dssp             EEEEEEESC-SCCCCEEEEBTTSSSCSEEEEECCTTSHHHHHCSSCTTCEEEEESSCBCTTCBHHHHHHHHHHHHHHTCS
T ss_pred             EEEEEecCC-CCCCEEEEeeecCCCCCEEEEEECCCChHHhcCCCCCCCEEeeECCEECCCCcHHHHHHHHHhcccCCCC
Confidence            333333444 689999999863   379999999999999976 99999999999999999999999999975    477


Q ss_pred             eEEEEEEECC
Q psy7774         163 KVTVLAHSDT  172 (173)
Q Consensus       163 ~v~l~v~r~~  172 (173)
                      .|+|++.|.+
T Consensus        98 ~V~L~v~r~p  107 (118)
T d1v6ba_          98 WIDLVVAVCP  107 (118)
T ss_dssp             EEEEEEECCC
T ss_pred             EEEEEEEeCC
Confidence            8999998863

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=2.7e-15  Score=98.42  Aligned_cols=81  Identities=17%  Similarity=0.230  Sum_probs=66.3

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeEE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAK--PADKVT  165 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v~  165 (173)
                      .+.++|+|.|+. .+|||+|.++.....++..+   .++..++|++||+|++|||+++.+++|++++.+|+.  .+..|+
T Consensus         9 ~e~~~v~l~k~~-~glGf~i~g~~~~~~~~~~~---~~~~~~~L~~GD~Il~VNg~~v~~~t~~evv~~lk~~~~g~~v~   84 (96)
T d1ujva_           9 AELMTLTIVKGA-QGFGFTIADSPTGQRVKQIL---DIQGCPGLCEGDLIVEINQQNVQNLSHTEVVDILKDCPIGSETS   84 (96)
T ss_dssp             CCCEEEEEECCS-SSSSEEEEEETTEEEEEEES---CGGGSTTCCSSCEEEEETTEECSSCCHHHHHHHHHHSCTTSEEE
T ss_pred             ceEEEEEEEeCC-CcccEEEEeeCCCceEeecc---CcccccCCCCCCEEEEECCEECCCCCHHHHHHHHHcCCCCCEEE
Confidence            367899999987 78999999877544444432   234447899999999999999999999999999985  478999


Q ss_pred             EEEEECC
Q psy7774         166 VLAHSDT  172 (173)
Q Consensus       166 l~v~r~~  172 (173)
                      |+|+|.+
T Consensus        85 l~v~R~~   91 (96)
T d1ujva_          85 LIIHRGS   91 (96)
T ss_dssp             EEEECCS
T ss_pred             EEEEECC
Confidence            9999864

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=3.5e-16  Score=104.01  Aligned_cols=80  Identities=29%  Similarity=0.419  Sum_probs=68.0

Q ss_pred             EEEEEEccCCCcccEEEEccC---CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhCC-----C
Q psy7774          91 RFLMIETRKCSNLGISLVGGN---AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAKP-----A  161 (173)
Q Consensus        91 ~~v~l~~~~~~~lG~~l~gg~---~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~~-----g  161 (173)
                      ..|.+.|.. .+|||+|.|+.   ..++||..|.++++|+++| |++||+|++|||+++.+++|++++.+|+++     .
T Consensus         8 ~vv~~~k~~-~~lG~~i~gg~~~~~~~~~I~~i~~gg~A~~~G~L~~GD~Il~VNg~~v~~~s~~e~~~~l~~a~~~~~~   86 (103)
T d1ufxa_           8 TLVRVKKSA-ATLGIAIEGGANTRQPLPRIVTIQRGGSAHNCGQLKVGHVILEVNGLTLRGKEHREAARIIAEAFKTKDR   86 (103)
T ss_dssp             EEEEEECCS-SSCCEEEECBTTSSCSSCEEEEECTTSHHHHHCSSCTTCBCCEETTEECTTCBHHHHHHHHHHHHHCSSC
T ss_pred             EEEEEEeCC-CccCEEEeeecCCCCCCEEEEEEcCCcchhhcCCCCCCCEEEEECCEECCCCcHHHHHHHHHHccCCCcc
Confidence            557777765 89999999876   3358999999999999976 999999999999999999999999999864     3


Q ss_pred             CeEEEEEEEC
Q psy7774         162 DKVTVLAHSD  171 (173)
Q Consensus       162 ~~v~l~v~r~  171 (173)
                      ..+.|.+.+.
T Consensus        87 ~~~~l~v~~~   96 (103)
T d1ufxa_          87 DYIDFLVTEF   96 (103)
T ss_dssp             SEEEEEECCC
T ss_pred             ceEEEEEeCC
Confidence            5677777654

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=2.5e-15  Score=103.18  Aligned_cols=82  Identities=13%  Similarity=0.139  Sum_probs=72.6

Q ss_pred             CCCEEEEEEccCCCcccEEEEccCCCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC--CCCeE
Q psy7774          88 GEPRFLMIETRKCSNLGISLVGGNAVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK--PADKV  164 (173)
Q Consensus        88 ~~~~~v~l~~~~~~~lG~~l~gg~~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~--~g~~v  164 (173)
                      .+...+.+.++. .||||.+..+ ..+++|..|.++++|+++| |+.||+|++|||.++.+++|++++.+|+.  .|..|
T Consensus        26 ~~~~~v~l~~g~-~GlG~~i~~~-~~~i~V~~v~~gg~A~~~G~l~~GD~Il~Ing~~v~~~~~~e~~~llr~~~~g~~v  103 (126)
T d1wifa_          26 NKVIQTKLTVGN-LGLGLVVIQN-GPYLQISHLINKGAAASDGILQPGDVLISVGHANVLGYTLREFLKLLQNITIGTVL  103 (126)
T ss_dssp             CCEEEEEEECCT-TCCCCCEEEE-TTEEEECCCCTTSSGGGCSSSCTTCBEEEESSSCCTTCCHHHHHHHHTSCCSSCEE
T ss_pred             CcEEEEEEeeCC-CcEEEEEEec-CCcEEEEEECCCChHHHcCCCCCCCEEEEECCEEeEeccHHHHHHHHhCCCCCCEE
Confidence            356778888877 7899999764 4579999999999999987 99999999999999999999999999986  36899


Q ss_pred             EEEEEEC
Q psy7774         165 TVLAHSD  171 (173)
Q Consensus       165 ~l~v~r~  171 (173)
                      .|+|.|.
T Consensus       104 ~L~v~R~  110 (126)
T d1wifa_         104 QIKAYRG  110 (126)
T ss_dssp             EEEEESS
T ss_pred             EEEEEeC
Confidence            9999985

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=99.60  E-value=5.7e-15  Score=96.07  Aligned_cols=72  Identities=21%  Similarity=0.355  Sum_probs=65.1

Q ss_pred             CCcccEEEEccC--CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEEC
Q psy7774         100 CSNLGISLVGGN--AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSD  171 (173)
Q Consensus       100 ~~~lG~~l~gg~--~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~  171 (173)
                      ..|+|+.+....  ..+++|..+.++|||+++||++||+|++|||.++.++++.+++.+++ ..|.+|.|+++|+
T Consensus         4 ~~GiGi~i~~~~~~~~~v~V~~v~~gsPA~~AGl~~GD~I~~Ing~~v~~~~~~~~~~~l~g~~g~~v~l~i~R~   78 (92)
T d1fc6a3           4 VTGVGLEITYDGGSGKDVVVLTPAPGGPAEKAGARAGDVIVTVDGTAVKGMSLYDVSDLLQGEADSQVEVVLHAP   78 (92)
T ss_dssp             CBBCSEEEEECTTCSSCEEEEEECTTSHHHHTTCCTTCEEEEETTEECTTCCHHHHHHHHCBSTTCEEEEEEEET
T ss_pred             eEEEEEEEEEcCCCCceEEEEEecCCCChhHHhhHcCCcceecCceEcCCCCHHHHHHHhhCCCCCEEEEEEEEC
Confidence            468999886543  45899999999999999999999999999999999999999999998 7889999999996

>d1wh1a_ b.36.1.1 (A:) Hypothetical protein KIAA1095 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1095
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=2.3e-14  Score=98.12  Aligned_cols=82  Identities=24%  Similarity=0.433  Sum_probs=65.9

Q ss_pred             CCEEEEEEccC-CCcccEEEEccC----CCCEEEEEecCCCcccccC-CCCCCEEEEECCEecCCCCHHHHHHHHhC-CC
Q psy7774          89 EPRFLMIETRK-CSNLGISLVGGN----AVGIYVHSVQSGSLGYSAG-LRTGDRILEYNGTDLRAATAEEAAYELAK-PA  161 (173)
Q Consensus        89 ~~~~v~l~~~~-~~~lG~~l~gg~----~~~i~V~~v~~gs~A~~~g-L~~gD~Il~Vng~~~~~~~~~~~~~~l~~-~g  161 (173)
                      +.+.|.|.|.. ..+|||+|.++.    ..+|||..|.+|++|++.| |+.||+|++|||.++.+  +.+++.+++. .+
T Consensus        19 e~~~V~l~k~~~~~~lG~~i~~~~~~~~~~gi~V~~v~~gg~A~~~g~L~~GD~Il~INg~~v~~--~~~~~~~l~~~~~   96 (124)
T d1wh1a_          19 ELEEVDLYRMNSQDKLGLTVCYRTDDEDDIGIYISEIDPNSIAAKDGRIREGDRIIQINGIEVQN--REEAVALLTSEEN   96 (124)
T ss_dssp             EECCBCCCCSSTTCCCCEEEECCCCCSSCCCEEEEEECSSSHHHHTCCCCTTCEEEEESSCBCCS--HHHHHHHHTCSSC
T ss_pred             eeEEEEEEECCCCCcccEEEEecCCCCCCCCEEEEEECCCChhhhhcccCCCCEEEEECCEECCC--HHHHHHHHhhCCC
Confidence            34567777743 468999998764    4689999999999999966 99999999999999975  5566667765 57


Q ss_pred             CeEEEEEEECC
Q psy7774         162 DKVTVLAHSDT  172 (173)
Q Consensus       162 ~~v~l~v~r~~  172 (173)
                      ..|.|++.|..
T Consensus        97 ~~v~l~v~r~~  107 (124)
T d1wh1a_          97 KNFSLLIARPE  107 (124)
T ss_dssp             CSCCEEEEECS
T ss_pred             CcEEEEEEeCC
Confidence            78899988753

>d2z9ia1 b.36.1.4 (A:227-314) Protease PepD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease PepD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.43  E-value=4.5e-13  Score=86.13  Aligned_cols=71  Identities=20%  Similarity=0.311  Sum_probs=59.0

Q ss_pred             CcccEEEEccC-CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEEC
Q psy7774         101 SNLGISLVGGN-AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSD  171 (173)
Q Consensus       101 ~~lG~~l~gg~-~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~  171 (173)
                      ..||+.+.... ..|++|..|.++|||+++||+.||+|++|||..+.++.+........++|+.+.|++.|.
T Consensus         3 ~~LGv~~~~~~~~~Gv~V~~V~~~spA~~aGl~~GD~I~~ing~~i~~~~~~~~~i~~~~~g~~v~l~v~r~   74 (88)
T d2z9ia1           3 ASLGVQVTNDKDTLGAKIVEVVAGGAAANAGVPKGVVVTKVDDRPINSADALVAAVRSKAPGATVALTFQDP   74 (88)
T ss_dssp             EECCEEEECCC-CCSEEEEEECTTSTTGGGTCCTTCEEEEETTEECCSHHHHHHHHHTSCTTCEEEEEEEET
T ss_pred             CEEeEEEEecCCCCcEEEEEECCCCHHHHcCCCCCCEEEEeCCCcCCcHHHHHHHHHhCCCCCEEEEEEEEC
Confidence            47899887655 568999999999999999999999999999999987654444333346799999999985

>d1ky9b2 b.36.1.4 (B:359-446) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=99.16  E-value=1.2e-11  Score=79.32  Aligned_cols=59  Identities=20%  Similarity=0.319  Sum_probs=53.1

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ..|++|..|.+++||+++||++||+|++|||.++.+  ..+...+++..+..+.|+|.|..
T Consensus        24 ~~Gv~V~~V~~~spA~~aGl~~GDvI~~ing~~v~~--~~~~~~~l~~~~~~v~l~v~R~~   82 (88)
T d1ky9b2          24 DQGVVVNNVKTGTPAAQIGLKKGDVIIGANQQAVKN--IAELRKVLDSKPSVLALNIQRGD   82 (88)
T ss_dssp             TSCCCBCCCCSSCTTGGGTCCSSCEEEEETTEECSS--HHHHHHHTTTCCSCCCEEEESSS
T ss_pred             CCeEEEEEECCCCHHHHcCCCCCcEEEEECCEEcCC--HHHHHHHHHhCCCEEEEEEEECC
Confidence            568999999999999999999999999999999964  57777888888899999999875

>d1lcya1 b.36.1.4 (A:226-325) Mitochondrial serine protease HtrA2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Mitochondrial serine protease HtrA2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=5.7e-10  Score=72.81  Aligned_cols=58  Identities=28%  Similarity=0.396  Sum_probs=50.4

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ..|++|..|.+++||+++||++||.|++|||..+.+  ..+....+ +.|+.+.|+|.|+.
T Consensus        30 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~V~s--~~dl~~~l-~~g~~v~l~v~R~g   87 (100)
T d1lcya1          30 QHGVLIHKVILGSPAHRAGLRPGDVILAIGEQMVQN--AEDVYEAV-RTQSQLAVQIRRGR   87 (100)
T ss_dssp             SSCEEEEEECTTSHHHHHTCCTTCEEEEETTEECCS--HHHHHHHH-TTCSSEEEEEEETT
T ss_pred             CCcEEEEEECCCchHhhcCCCCCcEEEEECCEEcCC--HHHHHHHh-cCCCEEEEEEEECC
Confidence            458999999999999999999999999999999975  45566666 47899999999974

>d1k32a1 b.36.1.3 (A:763-853) Tricorn protease {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Tricorn protease
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.99  E-value=1.4e-09  Score=69.84  Aligned_cols=68  Identities=16%  Similarity=0.164  Sum_probs=53.9

Q ss_pred             cccEEEEccCCCCEEEEEecCC--------CcccccCC-CCCCEEEEECCEecCCCCHHHHHHHHh-CCCCeEEEEEEEC
Q psy7774         102 NLGISLVGGNAVGIYVHSVQSG--------SLGYSAGL-RTGDRILEYNGTDLRAATAEEAAYELA-KPADKVTVLAHSD  171 (173)
Q Consensus       102 ~lG~~l~gg~~~~i~V~~v~~g--------s~A~~~gL-~~gD~Il~Vng~~~~~~~~~~~~~~l~-~~g~~v~l~v~r~  171 (173)
                      .||.-+.-. ..++.|..|.+|        |||+++|| ++||+|++|||.++.++.  +++.+++ ..|..|.|++.|.
T Consensus         2 ~lG~d~~~~-~~~~~I~~i~~G~~~~~~~~sPa~~aGl~k~GD~I~~IdG~~v~~~~--~~~~~l~g~~G~~V~L~i~R~   78 (91)
T d1k32a1           2 RIACDFKLD-GDHYVVAKAYAGDYSNEGEKSPIFEYGIDPTGYLIEDIDGETVGAGS--NIYRVLSEKAGTSARIRLSGK   78 (91)
T ss_dssp             BCSEEEEEE-TTEEEEEEECBSCTTSTTCBCGGGGGTCCCTTCEEEEETTEECBTTB--CHHHHHHTTTTSEEEEEEECS
T ss_pred             cccEEEEEE-CCeEEEEEEecCCCCCcccCChhHhcCCCCCCCEEEEECCEeecCcc--eeEEEEecCCCCEEEEEEEeC
Confidence            455554322 346889999987        99999998 899999999999998764  4556665 7899999999996


Q ss_pred             C
Q psy7774         172 T  172 (173)
Q Consensus       172 ~  172 (173)
                      .
T Consensus        79 g   79 (91)
T d1k32a1          79 G   79 (91)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d2hgaa1 b.36.1.6 (A:23-125) Uncharacterized protein MTH1368 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: MTH1368 C-terminal domain-like
domain: Uncharacterized protein MTH1368
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.95  E-value=4.4e-10  Score=73.86  Aligned_cols=56  Identities=20%  Similarity=0.218  Sum_probs=48.1

Q ss_pred             CCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHh--CCCCeEEEEEEEC
Q psy7774         113 VGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELA--KPADKVTVLAHSD  171 (173)
Q Consensus       113 ~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~--~~g~~v~l~v~r~  171 (173)
                      .|++|..|.+++||+.+ |+.||+|++|||..+.+  ..+....+.  ++|+.|.|++.|+
T Consensus         3 ~Gv~V~~V~~~sPA~~~-L~~GD~I~~ing~~v~~--~~~l~~~i~~~~~G~~v~l~v~R~   60 (103)
T d2hgaa1           3 DGVQIDSVVPGSPASKV-LTPGLVIESINGMPTSN--LTTYSAALKTISVGEVINITTDQG   60 (103)
T ss_dssp             CCEEEEEECSSSGGGGT-SCTTCEEEEETTEECSS--HHHHHHHHTTCCTTCEEEEEETTE
T ss_pred             CcEEEEEECCCChHHhc-CCCCCEEEEECCEEcCC--HHHHHHHHhhCCCCCEEEEEEEEC
Confidence            48999999999999875 99999999999999975  566666664  5699999999875

>d1ky9a1 b.36.1.4 (A:260-353) Protease Do (DegP, HtrA), C-terminal domains {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Protease Do (DegP, HtrA), C-terminal domains
species: Escherichia coli [TaxId: 562]

Probab=98.94  E-value=8e-11  Score=76.23  Aligned_cols=61  Identities=26%  Similarity=0.299  Sum_probs=50.7

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ..|++|..|.+++||+++||+.||.|++|||..+.+..+........+.|+.+.|++.|+.
T Consensus        26 ~~Gv~V~~V~~~spA~~aGl~~gDvI~~i~g~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g   86 (94)
T d1ky9a1          26 QRGAFVSQVLPNSSAAKAGIKAGDVITSLNGKPISSFAALRAQVGTMPVGSKLTLGLLRDG   86 (94)
T ss_dssp             CCSEECCCCTTCSSSTTTTCCTTCEECBSSSSBCCSSHHHHHHTTSSBTTCCCEEEEESSS
T ss_pred             CCCcEEEECCCChhHHHhCCCcccEEEEECCEEeCCHHHHHHHHHhCCCCCEEEEEEEECC
Confidence            3589999999999999999999999999999999887654443222357899999999974

>d1sota1 b.36.1.4 (A:255-353) Stress sensor protease DegS, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: HtrA-like serine proteases
domain: Stress sensor protease DegS, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.92  E-value=1.6e-10  Score=75.44  Aligned_cols=61  Identities=20%  Similarity=0.273  Sum_probs=47.7

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ..|++|..|.+++||+++||+.||.|++|||..+.+..+......-.+.|+.+.|++.|+.
T Consensus        25 ~~Gv~V~~V~~~spA~~aGl~~GDiI~~ing~~v~~~~~l~~~l~~~~~g~~v~l~v~R~g   85 (99)
T d1sota1          25 LQGIVVNEVSPDGPAANAGIQVNDLIISVDNKPAISALETMDQVAEIRPGSVIPVVVMRDD   85 (99)
T ss_dssp             --CEECCCCCSSSTTTSSSCCTTCEECBSSSSBCCCSHHHHHHHHHSCTTCEEEECC----
T ss_pred             CCccEEEEecCCCCHHHcCCCcceEEEEECCEecccHHHHHHHHHcCCCCCEEEEEEEECC
Confidence            3579999999999999999999999999999999987665443333578999999998874

>d2i6va1 b.36.1.5 (A:219-305) General secretion pathway protein C, EpsC {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: EpsC C-terminal domain-like
domain: General secretion pathway protein C, EpsC
species: Vibrio cholerae [TaxId: 666]

Probab=98.86  E-value=1.2e-09  Score=69.57  Aligned_cols=61  Identities=21%  Similarity=0.300  Sum_probs=49.7

Q ss_pred             CCCEEEEEecCCCcccccCCCCCCEEEEECCEecCCCCHHHHHHHHhCCCCeEEEEEEECC
Q psy7774         112 AVGIYVHSVQSGSLGYSAGLRTGDRILEYNGTDLRAATAEEAAYELAKPADKVTVLAHSDT  172 (173)
Q Consensus       112 ~~~i~V~~v~~gs~A~~~gL~~gD~Il~Vng~~~~~~~~~~~~~~l~~~g~~v~l~v~r~~  172 (173)
                      ..|+.|..+.++++|+++||+.||.|++|||.++.+..+...+......++.+.|++.|+.
T Consensus        18 ~~G~~v~~v~~~s~~~~aGl~~GDiI~~ing~~v~~~~~~~~~~~~~~~~~~~~l~v~R~g   78 (87)
T d2i6va1          18 VLGYRVSPGKDPVLFESIGLQDGDMAVALNGLDLTDPNVMNTLFQSMNEMTEMSLTVERDG   78 (87)
T ss_dssp             EEEEEEEECSCHHHHHHTTCCTTCEEEEETTEETTCHHHHHHHHHTGGGCSEEEEEEEETT
T ss_pred             EEEEEEecCCCCCHHHHCCCCCCCEEEEECCEEeecHHHHHHHHHhhccccccEEEEEECC
Confidence            4467788899999999999999999999999999876554433333467999999999974

>d1wf7a_ b.36.1.1 (A:) Enigma homolog ENH {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Enigma homolog ENH
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.42  E-value=0.00012  Score=47.04  Aligned_cols=30  Identities=20%  Similarity=0.289  Sum_probs=27.1

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      |.+++|+||+++||++++.|.|+|.|....
T Consensus        61 v~~~t~~eav~li~~~~~~v~L~v~R~~~~   90 (103)
T d1wf7a_          61 AQGMTHLEAQNKIKACTGSLNMTLQRASAA   90 (103)
T ss_dssp             CSSCCHHHHHHHHHHCSSEEEEEECCCSCC
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEECCCC
Confidence            578999999999999999999999987654

>d1tp5a1 b.36.1.1 (A:302-403) Synaptic protein PSD-95 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Synaptic protein PSD-95
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.37  E-value=5.3e-05  Score=48.72  Aligned_cols=33  Identities=33%  Similarity=0.718  Sum_probs=29.9

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCccCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYHE   33 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~~   33 (173)
                      +.+++|+||+++||++++.|+|+|+|.++.|..
T Consensus        66 v~~~~~~ev~~~l~~~~~~v~L~v~~~~~~~~~   98 (102)
T d1tp5a1          66 LRNASHEQAAIALKNAGQTVTIIAQYKPEEYSR   98 (102)
T ss_dssp             CTTCCHHHHHHHHHTSCSEEEEEEEECHHHHHT
T ss_pred             cCCCCHHHHHHHHHcCCCeEEEEEEECCccccc
Confidence            578999999999999999999999999887664

>d1uita_ b.36.1.1 (A:) Discs large 5 protein KIAA0583 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Discs large 5 protein KIAA0583
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.0002  Score=46.98  Aligned_cols=32  Identities=41%  Similarity=0.515  Sum_probs=28.9

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCccC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDKYH   32 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~~~   32 (173)
                      |.+++|+||+++|+++++.|+|+|.|.++.+.
T Consensus        74 v~~~~~~~~~~~l~~~~~~v~l~v~~~p~~~~  105 (117)
T d1uita_          74 LRSATEQQARLIIGQQCDTITILAQYNPHVHQ  105 (117)
T ss_dssp             TTTCCHHHHHHHTTSCCSEEEEEECCCSCCCC
T ss_pred             cCCCCHHHHHHHHHCCCCeEEEEEEECCccee
Confidence            57899999999999999999999999888655

>d1rgwa_ b.36.1.1 (A:) Zasp (Cypher, Oracle 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Zasp (Cypher, Oracle 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00023  Score=44.01  Aligned_cols=28  Identities=14%  Similarity=0.158  Sum_probs=25.6

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSP   28 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~   28 (173)
                      +.+++|+||+++||++++.|+|+|.|..
T Consensus        57 v~~~s~~ev~~~i~~~~~~v~L~V~R~~   84 (85)
T d1rgwa_          57 TDTMTHLEAQNKIKSASYNLSLTLQKSK   84 (85)
T ss_dssp             CTTCCHHHHHHHHTTCSSCEEEEEESCC
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEEEEECC
Confidence            4789999999999999999999999864

>d1ujva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=0.0003  Score=44.49  Aligned_cols=29  Identities=10%  Similarity=0.458  Sum_probs=25.2

Q ss_pred             CCcccHHHHHHHHhhC--CCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQC--GNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~--g~~v~L~V~r~~~   29 (173)
                      +++++|+|||++||++  ++.|+|+|.|...
T Consensus        62 v~~~t~~evv~~lk~~~~g~~v~l~v~R~~~   92 (96)
T d1ujva_          62 VQNLSHTEVVDILKDCPIGSETSLIIHRGSG   92 (96)
T ss_dssp             CSSCCHHHHHHHHHHSCTTSEEEEEEECCSS
T ss_pred             CCCCCHHHHHHHHHcCCCCCEEEEEEEECCC
Confidence            5789999999999996  6899999998643

>d1v5la_ b.36.1.1 (A:) Alpha-actinin-2 associated LIM protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Alpha-actinin-2 associated LIM protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00038  Score=44.58  Aligned_cols=29  Identities=10%  Similarity=0.104  Sum_probs=26.3

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +++++|+||+++|+++++.|+|+|.|..+
T Consensus        61 v~~~~~~e~v~ll~~~~~~v~l~V~R~~~   89 (103)
T d1v5la_          61 TESMTHADAQDRIKAASYQLCLKIDRAET   89 (103)
T ss_dssp             CSSCCHHHHHHHHTTCCSEEECEECCCTT
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEEEEECCc
Confidence            57899999999999999999999998654

>d1vb7a_ b.36.1.1 (A:) PDZ-LIM protein mystique {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: PDZ-LIM protein mystique
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.05  E-value=0.0003  Score=44.32  Aligned_cols=29  Identities=17%  Similarity=0.181  Sum_probs=26.2

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+++|+||+++|+++++.|+|+|.|...
T Consensus        62 v~~~~~~~~~~~l~~~~~~v~L~V~R~~~   90 (94)
T d1vb7a_          62 AENMLHAEAQSKIRQSASPLRLQLDRSSG   90 (94)
T ss_dssp             CTTCCHHHHHHHHHTCCSSEEEEEECCCC
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            56899999999999999999999998654

>d1um1a_ b.36.1.1 (A:) Hypothetical protein KIAA1849 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Hypothetical protein KIAA1849
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.00035  Score=45.19  Aligned_cols=30  Identities=23%  Similarity=0.340  Sum_probs=26.9

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      +++++|+||+++||++++.|+|+|.|.+..
T Consensus        69 v~~~~~~ev~~llk~~~~~v~l~v~r~~~~   98 (110)
T d1um1a_          69 LLGLGYLRAVDLIRHGGKKMRFLVAKSDVE   98 (110)
T ss_dssp             CSSCCHHHHHHHHHTCCSEEEEEEECCCHH
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEeCCCC
Confidence            578999999999999999999999886654

>d1whaa_ b.36.1.1 (A:) Scribble (KIAA0147) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Scribble (KIAA0147)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.96  E-value=0.00038  Score=44.69  Aligned_cols=29  Identities=21%  Similarity=0.299  Sum_probs=26.4

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      |.+++|+||+++||++++.|+|+|.|...
T Consensus        71 v~~~~~~ev~~~l~~~~~~v~l~v~R~~~   99 (105)
T d1whaa_          71 VTEARHDHAVSLLTAASPTIALLLEREAG   99 (105)
T ss_dssp             CTTCCHHHHHHHHTSCCSCEEEEEEECCC
T ss_pred             cCCCcHHHHHHHHHcCCCeEEEEEEECCC
Confidence            57899999999999999999999998654

>d1n7ea_ b.36.1.1 (A:) Glutamate receptor-interacting protein 1, GRIP1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor-interacting protein 1, GRIP1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.81  E-value=0.00069  Score=42.61  Aligned_cols=29  Identities=17%  Similarity=0.392  Sum_probs=26.4

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+++|+||+++||++++.|+|+|.|..+
T Consensus        61 v~~~~~~ev~~~l~~~~~~v~l~v~r~~~   89 (95)
T d1n7ea_          61 LKGKPLSEAIHLLQMAGETVTLKIKKQTD   89 (95)
T ss_dssp             CTTCCHHHHHHHHHTCCSEEEEEEECCCC
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEEECCC
Confidence            57899999999999999999999998755

>d2csja1 b.36.1.1 (A:8-111) Tight junction protein ZO-2, Tjp2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tight junction protein ZO-2, Tjp2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00074  Score=43.18  Aligned_cols=29  Identities=21%  Similarity=0.327  Sum_probs=26.1

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+++|++|+++||++++.|+|+|.|..+
T Consensus        70 v~~~~~~ev~~ll~~~~~~v~l~V~R~~~   98 (104)
T d2csja1          70 MEDVLHSFAVQQLRKSGKIAAIVVKRPRK   98 (104)
T ss_dssp             CBTCCHHHHHHHHHHSCSEEEEEEEEEEE
T ss_pred             CCCCCHHHHHHHHHcCCCEEEEEEEeCCC
Confidence            56899999999999999999999998644

>d1v62a_ b.36.1.1 (A:) Glutamate receptor interacting protein 2, GRIP2 (KIAA1719) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein 2, GRIP2 (KIAA1719)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.72  E-value=0.0013  Score=42.96  Aligned_cols=30  Identities=13%  Similarity=0.222  Sum_probs=27.0

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~~   30 (173)
                      |++++|++|+++||++++.|+|+|.|.+..
T Consensus        75 v~~~~~~~v~~~l~~~~~~v~l~v~~~~~~  104 (117)
T d1v62a_          75 MEHCSLLEATKLLASISEKVRLEILPVPQS  104 (117)
T ss_dssp             TTSCCHHHHHHHHHSCSSEEEEEECCBTTB
T ss_pred             cCCCCHHHHHHHHHcCCCcEEEEEEECCCC
Confidence            578999999999999999999999886664

>d1ueqa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.71  E-value=0.0019  Score=42.50  Aligned_cols=30  Identities=10%  Similarity=0.121  Sum_probs=25.6

Q ss_pred             CCcccHHHHHHHHhhC--CCeEEEEEEeCCCc
Q psy7774           1 MRSATYQLAASVLRQC--GNSITMLVQYSPDK   30 (173)
Q Consensus         1 l~~~th~~av~~L~~~--g~~v~L~V~r~~~~   30 (173)
                      |.+++|+||+++||++  +..|.|+|.|....
T Consensus        77 v~~~t~~eav~~l~~~~~g~~v~L~v~R~~~~  108 (123)
T d1ueqa_          77 VLGHTHADVVKLFQSVPIGQSVNLVLCRGYPL  108 (123)
T ss_dssp             CTTSCHHHHHHHHHTSCTTCEEEEEEEESCCC
T ss_pred             CCCCCHHHHHHHHHcCCCCCEEEEEEEcCCCC
Confidence            5789999999999997  68899999986443

>d1wfva_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.00075  Score=43.12  Aligned_cols=29  Identities=17%  Similarity=0.319  Sum_probs=26.3

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+++|+||+++||++++.|+|+|.|...
T Consensus        69 v~~~s~~ev~~~l~~~~~~v~l~v~R~~~   97 (103)
T d1wfva_          69 TRDMTHARAIELIKSGGRRVRLLLKRGTG   97 (103)
T ss_dssp             CSSCCHHHHHHHHHHHCSEECEEEECTTC
T ss_pred             CCCCcHHHHHHHHHcCCCEEEEEEEECCC
Confidence            57899999999999999999999998654

>d1r6ja_ b.36.1.1 (A:) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0011  Score=40.52  Aligned_cols=26  Identities=15%  Similarity=0.198  Sum_probs=23.7

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEe
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQY   26 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r   26 (173)
                      +.+++|+||+++|+++++.|+|+|..
T Consensus        55 v~~~t~~~~~~ll~~~~~~v~l~v~p   80 (82)
T d1r6ja_          55 VIGLKDSQIADILSTSGTVVTITIMP   80 (82)
T ss_dssp             CTTCCHHHHHHHHHHSCSEEEEEEEE
T ss_pred             EeeCCHHHHHHHHHcCCCEEEEEEEc
Confidence            47899999999999999999999863

>d1g9oa_ b.36.1.1 (A:) Na+/H+ exchanger regulatory factor, NHERF {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Na+/H+ exchanger regulatory factor, NHERF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.44  E-value=0.002  Score=40.08  Aligned_cols=27  Identities=26%  Similarity=0.266  Sum_probs=24.3

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYS   27 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~   27 (173)
                      +.+++|+||+++||++++.|+|+|.+.
T Consensus        59 v~~~t~~e~~~ll~~~~~~v~L~v~~~   85 (91)
T d1g9oa_          59 VEKETHQQVVSRIRAALNAVRLLVVDP   85 (91)
T ss_dssp             CTTCCHHHHHHHHHTCSSEEEEEEECC
T ss_pred             CCCCCHHHHHHHHHcCCCeEEEEEECC
Confidence            468999999999999999999999863

>d1uewa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.0013  Score=42.54  Aligned_cols=29  Identities=10%  Similarity=0.170  Sum_probs=26.0

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+++|+||+++||+++..|+|+|.|...
T Consensus        76 v~~~~~~ev~~ll~~~~~~v~l~V~r~~~  104 (114)
T d1uewa_          76 IINMPHADIVKLIKDAGLSVTLRIIPQEE  104 (114)
T ss_dssp             TTTSCHHHHHHHHHHTTTEEEEEECCCSC
T ss_pred             cCCCcHHHHHHHHHcCCCeEEEEEEeCCC
Confidence            56899999999999999999999998644

>d2f5ya1 b.36.1.1 (A:19-95) Regulator of G-protein signaling 3, RGS3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Regulator of G-protein signaling 3, RGS3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.19  E-value=0.0028  Score=38.11  Aligned_cols=27  Identities=22%  Similarity=0.236  Sum_probs=24.7

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYS   27 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~   27 (173)
                      +++++|++++.+|+++++.++|+|.|-
T Consensus        50 v~~~~~~~v~~~i~~~~~~v~L~v~R~   76 (77)
T d2f5ya1          50 VEHWKCVELAHEIRSCPSEIILLVWRM   76 (77)
T ss_dssp             CTTCCHHHHHHHHHTCSSEEEEEEEEC
T ss_pred             CCCCCHHHHHHHHHCCCCEEEEEEEEE
Confidence            468999999999999999999999873

>d1y7na1 b.36.1.1 (A:12-90) Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Amyloid beta A4 precursor protein-binding family A member 1 (APBA1, X11)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.97  E-value=0.0027  Score=38.38  Aligned_cols=25  Identities=12%  Similarity=0.111  Sum_probs=23.1

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEE
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQ   25 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~   25 (173)
                      +.+++|++|+++||++++.|+|+|.
T Consensus        52 v~~~~~~~~~~ll~~~~~~v~l~vi   76 (79)
T d1y7na1          52 VVATPHEKIVHILSNAVGEIHMKTM   76 (79)
T ss_dssp             CTTSCHHHHHHHHHHCCEEEEEEEE
T ss_pred             eCCCCHHHHHHHHHcCCCEEEEEEE
Confidence            4689999999999999999999885

>d1kwaa_ b.36.1.1 (A:) Cask/Lin-2 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Cask/Lin-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.0031  Score=38.82  Aligned_cols=27  Identities=26%  Similarity=0.265  Sum_probs=23.8

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYS   27 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~   27 (173)
                      +.+++|++|+++|+++++.|+|+|.+.
T Consensus        58 v~~~~~~~~~~ll~~~~~~v~L~i~p~   84 (88)
T d1kwaa_          58 VANQTVEQLQKMLREMRGSITFKIVPS   84 (88)
T ss_dssp             GGGSCHHHHHHHHHHCCEEEEEEEECC
T ss_pred             CCCCCHHHHHHHHHcCCCcEEEEEEeC
Confidence            468899999999999999999998743

>d1wifa_ b.36.1.1 (A:) hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: hypothetical PDZ domain containing protein Uqcrc2 (4930408O21Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.88  E-value=0.0084  Score=39.43  Aligned_cols=29  Identities=10%  Similarity=0.012  Sum_probs=25.0

Q ss_pred             CCcccHHHHHHHHhhC--CCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQC--GNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~--g~~v~L~V~r~~~   29 (173)
                      |++++|+||+++||.+  |..|+|+|.|...
T Consensus        82 v~~~~~~e~~~llr~~~~g~~v~L~v~R~~~  112 (126)
T d1wifa_          82 VLGYTLREFLKLLQNITIGTVLQIKAYRGFL  112 (126)
T ss_dssp             CTTCCHHHHHHHHTSCCSSCEEEEEEESSSS
T ss_pred             eEeccHHHHHHHHhCCCCCCEEEEEEEeCCC
Confidence            5789999999999986  5899999998743

>d1x6da1 b.36.1.2 (A:8-114) Interleukin 16 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Interleukin 16
domain: Interleukin 16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0061  Score=38.82  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=22.0

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEe
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQY   26 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r   26 (173)
                      +++++|+||+++||++++.+.|++.+
T Consensus        68 v~~~~~~ea~~~l~~~~~~~~l~v~~   93 (107)
T d1x6da1          68 LKGTTHHDALAILRQAREPRQAVIVT   93 (107)
T ss_dssp             CSSCCHHHHHHHHHHTTSSSEEEEEE
T ss_pred             cCCCCHHHHHHHHHcCCCCEEEEEEE
Confidence            57899999999999998877776653

>d1uepa_ b.36.1.1 (A:) Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Membrane associated guanylate kinase inverted-2 (MAGI-2, KIAA0705)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0037  Score=39.66  Aligned_cols=29  Identities=7%  Similarity=0.153  Sum_probs=24.4

Q ss_pred             CCcccHHHHHHHHhhCC--CeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCG--NSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g--~~v~L~V~r~~~   29 (173)
                      +.+++|+||+++||+++  ..|+|+|.|+..
T Consensus        67 v~~~t~~e~~~~l~~~~~~~~v~l~v~r~~~   97 (103)
T d1uepa_          67 VAGKTHRYVIDLMHHAARNGQVNLTVRRKVL   97 (103)
T ss_dssp             CTTSCHHHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             CCCCCHHHHHHHHHhCCCCCEEEEEEEeCCC
Confidence            57899999999999974  579999998643

>d1vaea_ b.36.1.1 (A:) Rhophilin-2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Rhophilin-2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.31  E-value=0.011  Score=37.91  Aligned_cols=27  Identities=19%  Similarity=0.178  Sum_probs=22.8

Q ss_pred             CCcccHHHHHHHHhhCC-CeEEEEEEeC
Q psy7774           1 MRSATYQLAASVLRQCG-NSITMLVQYS   27 (173)
Q Consensus         1 l~~~th~~av~~L~~~g-~~v~L~V~r~   27 (173)
                      +++++|+||+++||+++ +.|+|+|.+.
T Consensus        68 v~~~~~~ev~~llk~~~~~~v~l~v~~~   95 (111)
T d1vaea_          68 CKWLTVSEVMKLLKSFGGEEVEMKVVSL   95 (111)
T ss_dssp             CSSCCHHHHHHHHHHTTTSEECEEEECE
T ss_pred             cCCCCHHHHHHHHHcCCCCeEEEEEECC
Confidence            57899999999999984 6799988753

>d1uf1a_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.056  Score=35.29  Aligned_cols=28  Identities=11%  Similarity=0.084  Sum_probs=23.1

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +.+++|+||+++||+++ .|.|+|.+...
T Consensus        78 v~~~s~~evv~~lr~~~-~v~l~v~~~~~  105 (128)
T d1uf1a_          78 FLNILHDEAVRLLKSSR-HLILTVKDVGR  105 (128)
T ss_dssp             CSSCCHHHHHHHHTTCS-EEEEEEECCSC
T ss_pred             CCCCCHHHHHHHHhcCC-cEEEEEEECCc
Confidence            57899999999999875 68999976543

>d1v5qa_ b.36.1.1 (A:) Glutamate receptor interacting protein {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Glutamate receptor interacting protein
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.70  E-value=0.018  Score=37.53  Aligned_cols=26  Identities=15%  Similarity=0.286  Sum_probs=21.1

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEe
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQY   26 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r   26 (173)
                      |.+++|+||+++||+++..+.|+|.+
T Consensus        78 v~~~~~~e~~~~lk~~~~~~~l~l~~  103 (122)
T d1v5qa_          78 TEDSTFEEANQLLRDSSITSKVTLEI  103 (122)
T ss_dssp             SSSSCHHHHHHHHHHHTTTTCEEEEE
T ss_pred             CCCCCHHHHHHHHHcCCCceEEEEEE
Confidence            57899999999999998776665554

>d1ueza_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.58  E-value=0.036  Score=34.70  Aligned_cols=28  Identities=14%  Similarity=0.122  Sum_probs=22.3

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r~~~   29 (173)
                      +++++|++|+++||++++ +.|+|.+...
T Consensus        67 v~~~~~~~v~~ll~~~~~-~~l~V~~~~~   94 (101)
T d1ueza_          67 LARVTHAEAVKALKGSKK-LVLSVYSAGR   94 (101)
T ss_dssp             CSSCCHHHHHHHSSSSSS-CCEEECCCCC
T ss_pred             CCCCCHHHHHHHHhcCCC-EEEEEEECCC
Confidence            578999999999999876 6677776543

>d1qaua_ b.36.1.1 (A:) Neuronal nitric oxide synthase, NNOS {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Neuronal nitric oxide synthase, NNOS
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.38  E-value=0.046  Score=34.60  Aligned_cols=29  Identities=21%  Similarity=0.378  Sum_probs=22.1

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEE-EeCCC
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLV-QYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V-~r~~~   29 (173)
                      |.+++|++|+++||+++..+.|++ .+.++
T Consensus        59 v~~~s~~e~~~~l~~~~~~~~~~l~~~~~~   88 (112)
T d1qaua_          59 LVDLSYDSALEVLRGIASETHVVLILRGPE   88 (112)
T ss_dssp             CTTSCHHHHHHHHHHSCSSSEEEEEEECCT
T ss_pred             ccCCCHHHHHHHHHcCCCCcEEEEEEeCCC
Confidence            578999999999999987766644 34443

>d1fc6a3 b.36.1.3 (A:157-248) Photosystem II D1 C-terminal processing protease {Algae (Scenedesmus obliquus) [TaxId: 3088]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: Tail specific protease PDZ domain
domain: Photosystem II D1 C-terminal processing protease
species: Algae (Scenedesmus obliquus) [TaxId: 3088]

Probab=91.43  E-value=0.11  Score=31.63  Aligned_cols=29  Identities=3%  Similarity=0.208  Sum_probs=24.5

Q ss_pred             CCcccHHHHHHHHh-hCCCeEEEEEEeCCC
Q psy7774           1 MRSATYQLAASVLR-QCGNSITMLVQYSPD   29 (173)
Q Consensus         1 l~~~th~~av~~L~-~~g~~v~L~V~r~~~   29 (173)
                      +.+++|++|+++|+ ..|..|+|.|.|+..
T Consensus        51 v~~~~~~~~~~~l~g~~g~~v~l~i~R~g~   80 (92)
T d1fc6a3          51 VKGMSLYDVSDLLQGEADSQVEVVLHAPGA   80 (92)
T ss_dssp             CTTCCHHHHHHHHCBSTTCEEEEEEEETTE
T ss_pred             cCCCCHHHHHHHhhCCCCCEEEEEEEECCC
Confidence            35789999999999 578899999999654

>d1x5na1 b.36.1.1 (A:8-108) Harmonin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Harmonin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.03  E-value=0.09  Score=32.77  Aligned_cols=25  Identities=16%  Similarity=0.220  Sum_probs=20.6

Q ss_pred             CCcccHHHHHHHHhhCCCeEEEEEEe
Q psy7774           1 MRSATYQLAASVLRQCGNSITMLVQY   26 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~v~L~V~r   26 (173)
                      +++++|++|+++||.++. ++|+|.+
T Consensus        66 v~~~~~~~v~~~lk~~~~-~~l~v~~   90 (101)
T d1x5na1          66 FSNLDHKEAVNVLKSSRS-LTISIVA   90 (101)
T ss_dssp             TTSCCTTHHHHHHHHCSS-EEEEECS
T ss_pred             CCCCCHHHHHHHHhCCCC-EEEEEEE
Confidence            578999999999999875 6676654

>d2cs5a1 b.36.1.1 (A:8-113) Tyrosine-protein phosphatase non-receptor type 4, PTPN4 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Tyrosine-protein phosphatase non-receptor type 4, PTPN4
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.04  E-value=0.29  Score=30.48  Aligned_cols=17  Identities=6%  Similarity=0.051  Sum_probs=15.0

Q ss_pred             CCcccHHHHHHHHhhCC
Q psy7774           1 MRSATYQLAASVLRQCG   17 (173)
Q Consensus         1 l~~~th~~av~~L~~~g   17 (173)
                      +.+++|+||+++||+++
T Consensus        68 v~~~~~~e~~~ll~~~~   84 (106)
T d2cs5a1          68 IAEHTHDQVVLFIKASC   84 (106)
T ss_dssp             TTSSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHhCC
Confidence            57899999999999864

>d1ufxa_ b.36.1.1 (A:) KIAA1526 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: KIAA1526 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.25  E-value=0.1  Score=32.58  Aligned_cols=19  Identities=16%  Similarity=0.232  Sum_probs=16.5

Q ss_pred             CCcccHHHHHHHHhhCCCe
Q psy7774           1 MRSATYQLAASVLRQCGNS   19 (173)
Q Consensus         1 l~~~th~~av~~L~~~g~~   19 (173)
                      |++++|+||+++||++++.
T Consensus        65 v~~~s~~e~~~~l~~a~~~   83 (103)
T d1ufxa_          65 LRGKEHREAARIIAEAFKT   83 (103)
T ss_dssp             CTTCBHHHHHHHHHHHHHC
T ss_pred             CCCCcHHHHHHHHHHccCC
Confidence            5789999999999998654

>d1w9ea1 b.36.1.1 (A:110-194) Syntenin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: PDZ domain-like
superfamily: PDZ domain-like
family: PDZ domain
domain: Syntenin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.09  E-value=0.8  Score=26.99  Aligned_cols=17  Identities=24%  Similarity=0.071  Sum_probs=14.6

Q ss_pred             CCcccHHHHHHHHhhCC
Q psy7774           1 MRSATYQLAASVLRQCG   17 (173)
Q Consensus         1 l~~~th~~av~~L~~~g   17 (173)
                      +.+++|++++++||++.
T Consensus        57 v~~~~~~~v~~~lk~~~   73 (85)
T d1w9ea1          57 CAGWSSDKAHKVLKQAF   73 (85)
T ss_dssp             CTTCCHHHHHHHHHHCC
T ss_pred             eCCCCHHHHHHHHhcCC
Confidence            46789999999999873