Psyllid ID: psy7791

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-

MLDIATQQESSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEDGDDEEDEDEEESEAEEGEKENKETIIDNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDP

cccccccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccEEEEEEEccccccHHccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccHHHHHHHHHHHHccccccccHHHcHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHccc

ccccccccHHHcccHcHcHccccccccEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHcccccccccEEEEEEccccccHHHcccEEcccccHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHcccEEEEEccHHHHHHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHEEEEHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccHHHEEEEEcccccccHHHHHHHHHHHHHHHHccHHHHHHHHccc

mldiatqqessepktstnilssktggayippaklKLMQQSISDKSSVEYQRISWETLKKSIhgsvnkvntgnIGIIARKLFQENIIRGRGLLTRTILQaqaasptfTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSfkrndkalcINSVTFIAHLVNQQVAHEIIVLEILTLLvetptndsdfslepyskhklhHLRSLMCMPLWWISSIQSFQALESFFSTdvynsskgkLEKRVQYMIEVLAQVRKdnfkdfpdviedldlvpeedkfthlmtldgvkdTQDILNVFqydpeylmneeKYTTLRREilgdededdedgddeededeeeseaeegekenketiiDNTETNLVALRRTIYLTIHSSLDFEECAHKLLRmqlkpgqeselchivhidtslwglfgdQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYstvhrldinklrddvcVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIhlneeettssgRIFIKILFQELSEYMglsklnqkikdp

mldiatqqessepktstnilssktggaYIPPAKLKLMQQSISDKSSVEYQRISWETLkksihgsvnkvntgnigIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQvrkdnfkdFPDVIEDLDLVPEEDKFTHLmtldgvkdtqDILNVFQydpeylmneeKYTTLRReilgdededdedgddeededeeeseaeegekenketiidntetnLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLdinklrddvCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNeeettssgRIFIKILFQELSeymglsklnqkikdp

MLDIATQQESSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHeiivleiltllvetPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILgdededdedgddeededeeeseaeegekeNKETIIDNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDP

***********************************************EYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLR*************************************IIDNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGL**********

**************************AYIP************************ETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESF*****************QYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFT******************QYDPEYLMNEEKYTTLRREI************************************DNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIK**

*****************NILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGD*****************************ETIIDNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSK********

****************TNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILG***************************ENKETIIDNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIK**

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MLDIATQQESSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEDGDDEEDEDEEESEAEEGExxxxxxxxxxxxxxxxxxxxxIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDP

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		551	2.2.26 [Sep-21-2011]
Q9VJ87		1330	Pre-mRNA-splicing factor	yes	N/A	0.865	0.358	0.554	1e-163
Q52KN9		803	Pre-mRNA-splicing factor	N/A	N/A	0.887	0.608	0.503	1e-137
Q5ZKA3		926	Pre-mRNA-splicing factor	yes	N/A	0.863	0.514	0.490	1e-133
Q08C72		985	Pre-mRNA-splicing factor	yes	N/A	0.874	0.489	0.503	1e-132
Q9HCG8		908	Pre-mRNA-splicing factor	yes	N/A	0.863	0.524	0.518	1e-132
Q8C5N3		908	Pre-mRNA-splicing factor	yes	N/A	0.874	0.530	0.506	1e-132
Q5RA93		908	Pre-mRNA-splicing factor	yes	N/A	0.865	0.525	0.517	1e-132
Q17336		897	Pre-mRNA-splicing factor	yes	N/A	0.885	0.544	0.473	1e-130
Q4WKB9		881	Pre-mRNA-splicing factor	yes	N/A	0.858	0.536	0.481	1e-127
Q9P6R9		887	Pre-mRNA-splicing factor	yes	N/A	0.858	0.533	0.452	1e-123

>sp\|Q9VJ87\|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster GN=ncm PE=1 SV=3	Back alignment and function desciption

 Score =  575 bits (1482), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 303/546 (55%), Positives = 377/546 (69%), Gaps = 69/546 (12%)

Query: 14  KTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNI 73
           + + ++L+S+TGGAYIPPAKL++MQ  I+DKSS  YQRI+WE LKKSIHG +NKVN  NI
Sbjct: 376 RKTVDVLTSRTGGAYIPPAKLRMMQSQITDKSSAAYQRIAWEALKKSIHGYINKVNVTNI 435

Query: 74  GIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCI 133
            II R+L +ENI+RGRGLL+R+I+QAQAASPTFT+VYAALV IINSKFP+IGELLL R +
Sbjct: 436 AIITRELLRENIVRGRGLLSRSIIQAQAASPTFTHVYAALVSIINSKFPNIGELLLKRLV 495

Query: 134 QQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETPTNDSDFSLEPYSK 193
            QF+R+F+RNDK +C+++  FI HLVNQ+VAHEI+ LEILTLLVETPT+DS      + K
Sbjct: 496 IQFRRAFRRNDKMVCMSATRFIGHLVNQRVAHEILALEILTLLVETPTDDSVEVAIAFLK 555

Query: 194 HKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDN 253
                L  +    +  I     F+ L +          +GKL+KRVQYMIEVL Q+RKD 
Sbjct: 556 ECGMKLTEVSSKGIGAI-----FEMLRNIL-------HEGKLDKRVQYMIEVLFQIRKDG 603

Query: 254 FKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREIL 313
           FKD   V+ +L+LV E+D+FTHLM LD   +T+DILNVF++D  Y  NE+KY  L REIL
Sbjct: 604 FKDHQAVVPELELVEEDDQFTHLMMLDEATETEDILNVFKFDDNYAENEDKYKGLSREIL 663

Query: 314 GDEDEDDEDGDDEEDEDEE---------ESEAEEGEKENKETIIDNTETNLVALRRTIYL 364
           G +D          D D +         E +AE G+      IID+TETNL+ALRRTIYL
Sbjct: 664 GSDDGSSSGSGSGSDSDSDSDGESGSDAEKKAEAGD------IIDSTETNLIALRRTIYL 717

Query: 365 TIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRF 424
           TI+SSLD+EECAHKL++MQLKPGQE ELCH+  +D         + RTYEKF+GLLAQRF
Sbjct: 718 TINSSLDYEECAHKLMKMQLKPGQEIELCHMF-LDCCA------EQRTYEKFYGLLAQRF 770

Query: 425 CQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVS 484
           C INK+Y+ P E+IF+++Y T HRLD N                                
Sbjct: 771 CNINKIYIPPFEEIFKDTYQTTHRLDTN-------------------------------- 798

Query: 485 NYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKL 544
              +LRNV+KFFAH LFTDAI W VL CI LNE++TTSS RIFIKILFQEL+EYMGL KL
Sbjct: 799 ---RLRNVSKFFAHLLFTDAISWDVLECIQLNEDDTTSSSRIFIKILFQELAEYMGLGKL 855

Query: 545 NQKIKD 550
           N K+KD
Sbjct: 856 NAKLKD 861

May be involved in pre-mRNA splicing.
Drosophila melanogaster (taxid: 7227)

>sp\|Q52KN9\|CWC22_XENLA Pre-mRNA-splicing factor CWC22 homolog OS=Xenopus laevis GN=cwc22 PE=2 SV=1	Back alignment and function description

>sp\|Q5ZKA3\|CWC22_CHICK Pre-mRNA-splicing factor CWC22 homolog OS=Gallus gallus GN=CWC22 PE=2 SV=2	Back alignment and function description

>sp\|Q08C72\|CWC22_DANRE Pre-mRNA-splicing factor CWC22 homolog OS=Danio rerio GN=cwc22 PE=2 SV=1	Back alignment and function description

>sp\|Q9HCG8\|CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens GN=CWC22 PE=1 SV=3	Back alignment and function description

>sp\|Q8C5N3\|CWC22_MOUSE Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus GN=Cwc22 PE=1 SV=1	Back alignment and function description

>sp\|Q5RA93\|CWC22_PONAB Pre-mRNA-splicing factor CWC22 homolog OS=Pongo abelii GN=CWC22 PE=2 SV=1	Back alignment and function description

>sp\|Q17336\|CWC22_CAEEL Pre-mRNA-splicing factor CWC22 homolog OS=Caenorhabditis elegans GN=let-858 PE=2 SV=1	Back alignment and function description

>sp\|Q4WKB9\|CWC22_ASPFU Pre-mRNA-splicing factor cwc22 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc22 PE=3 SV=1	Back alignment and function description

>sp\|Q9P6R9\|CWC22_SCHPO Pre-mRNA-splicing factor cwf22 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cwf22 PE=1 SV=3	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		551
383849238		750	PREDICTED: pre-mRNA-splicing factor CWC2	0.891	0.654	0.586	1e-169
307199307		770	Nucampholin [Harpegnathos saltator]	0.885	0.633	0.587	1e-168
158297380		971	AGAP007874-PA [Anopheles gambiae str. PE	0.878	0.498	0.572	1e-168
340721736		633	PREDICTED: pre-mRNA-splicing factor CWC2	0.872	0.759	0.583	1e-167
328711239		988	PREDICTED: pre-mRNA-splicing factor CWC2	0.872	0.486	0.567	1e-167
350406897		633	PREDICTED: pre-mRNA-splicing factor CWC2	0.871	0.758	0.582	1e-166
157108499		845	cell cycle control protein cwf22 [Aedes	0.878	0.572	0.555	1e-164
242006078		761	pre-mRNA-splicing factor CWC22, putative	0.874	0.633	0.576	1e-163
195388260		1263	GJ19836 [Drosophila virilis] gi\|19414925	0.883	0.385	0.551	1e-162
195115120		1273	GI17204 [Drosophila mojavensis] gi\|19391	0.876	0.379	0.548	1e-161

>gi\|383849238\|ref\|XP_003700252.1\| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Megachile rotundata]	Back alignment and taxonomy information

 Score =  600 bits (1546), Expect = e-169,   Method: Compositional matrix adjust.
 Identities = 320/546 (58%), Positives = 389/546 (71%), Gaps = 55/546 (10%)

Query: 6   TQQESSEPKTST-NILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGS 64
           T  E+ E +  T  +L+S+TGGAYIPPAKL+LMQ  I+DKS   YQRI+WE LKKSIHG 
Sbjct: 122 TSNEALERQNRTVELLTSRTGGAYIPPAKLRLMQAEITDKSGAAYQRIAWEALKKSIHGH 181

Query: 65  VNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSI 124
           +NKVN  NIG+I R+L +ENI+RGRGLL R+I+QAQAASPTFT+VYAAL  IINSKFP+I
Sbjct: 182 INKVNISNIGLITRELLKENIVRGRGLLARSIIQAQAASPTFTSVYAALTAIINSKFPNI 241

Query: 125 GELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVETPTNDS 184
           GEL+L R + QFKR F+RNDK LCI+S TFIAHLVNQ+VAHEI+ LEILTLLVETPT+DS
Sbjct: 242 GELILKRLVIQFKRGFRRNDKPLCISSGTFIAHLVNQRVAHEILALEILTLLVETPTDDS 301

Query: 185 DFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIE 244
                 + K           M L  +S     + +E+ F        +G+L+KRVQYMIE
Sbjct: 302 VEVAIAFLKE--------CGMKLTEVSR----KGIEAIFEMLRNILHEGQLDKRVQYMIE 349

Query: 245 VLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEK 304
           V+ QVRKD FKD   V ++LDLV EE++FTHL+TLD   D+QDILNVF++D EY+ NE+K
Sbjct: 350 VMFQVRKDGFKDHEAVPDELDLVEEENQFTHLVTLDEATDSQDILNVFKFDAEYVNNEDK 409

Query: 305 YTTLRREILGDEDEDDEDGDDEEDEDEEESEAEEGEKENKETIIDNTETNLVALRRTIYL 364
           Y  L +EILG +    E  +D+E+E  +E  +    +  ++ I+DNTETNL ALRRTIYL
Sbjct: 410 YKQLSKEILGSDVSGSESEEDDEEETSDEDSSTAVTEGKEDVIVDNTETNLTALRRTIYL 469

Query: 365 TIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRF 424
           TIHSSLDFEECAHKL++MQLKPGQE+ELCH+  +D         ++RTYEKFFGLLA RF
Sbjct: 470 TIHSSLDFEECAHKLMKMQLKPGQETELCHMF-LDCCA------EMRTYEKFFGLLAGRF 522

Query: 425 CQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVS 484
           C INK+YV P EQIFR+SY T+HRLD N                                
Sbjct: 523 CAINKIYVTPFEQIFRDSYHTIHRLDTN-------------------------------- 550

Query: 485 NYDKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKL 544
              KLRNV+KFFAH LFTD+I W VLSCI L EE+TTSS RIFIKILFQELSEYMGLSKL
Sbjct: 551 ---KLRNVSKFFAHLLFTDSISWEVLSCIKLTEEDTTSSNRIFIKILFQELSEYMGLSKL 607

Query: 545 NQKIKD 550
           NQ++KD
Sbjct: 608 NQRVKD 613

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi\|307199307\|gb\|EFN79960.1\| Nucampholin [Harpegnathos saltator]	Back alignment and taxonomy information

>gi\|158297380\|ref\|XP_317618.4\| AGAP007874-PA [Anopheles gambiae str. PEST] gi\|157015167\|gb\|EAA12244.4\| AGAP007874-PA [Anopheles gambiae str. PEST]	Back alignment and taxonomy information

>gi\|340721736\|ref\|XP_003399271.1\| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Bombus terrestris]	Back alignment and taxonomy information

>gi\|328711239\|ref\|XP_001943019.2\| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Acyrthosiphon pisum]	Back alignment and taxonomy information

>gi\|350406897\|ref\|XP_003487916.1\| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Bombus impatiens]	Back alignment and taxonomy information

>gi\|157108499\|ref\|XP_001650254.1\| cell cycle control protein cwf22 [Aedes aegypti] gi\|108884014\|gb\|EAT48239.1\| AAEL000707-PA [Aedes aegypti]	Back alignment and taxonomy information

>gi\|242006078\|ref\|XP_002423883.1\| pre-mRNA-splicing factor CWC22, putative [Pediculus humanus corporis] gi\|212507129\|gb\|EEB11145.1\| pre-mRNA-splicing factor CWC22, putative [Pediculus humanus corporis]	Back alignment and taxonomy information

>gi\|195388260\|ref\|XP_002052801.1\| GJ19836 [Drosophila virilis] gi\|194149258\|gb\|EDW64956.1\| GJ19836 [Drosophila virilis]	Back alignment and taxonomy information

>gi\|195115120\|ref\|XP_002002112.1\| GI17204 [Drosophila mojavensis] gi\|193912687\|gb\|EDW11554.1\| GI17204 [Drosophila mojavensis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		551
FB\|FBgn0086707		1330	ncm "nucampholin" [Drosophila	0.767	0.318	0.539	2.4e-142
UNIPROTKB\|F1RYP5		904	CWC22 "Uncharacterized protein	0.785	0.478	0.480	3.4e-126
UNIPROTKB\|J9P9J1		908	CWC22 "Uncharacterized protein	0.785	0.476	0.478	5.6e-126
RGD\|1565385		905	Cwc22 "CWC22 spliceosome-assoc	0.785	0.478	0.478	5.6e-126
UNIPROTKB\|E2RIF6		914	CWC22 "Uncharacterized protein	0.785	0.473	0.476	1.5e-125
UNIPROTKB\|F1MWG3		899	CWC22 "Uncharacterized protein	0.785	0.481	0.475	1.9e-125
MGI\|MGI:2136773		908	Cwc22 "CWC22 spliceosome-assoc	0.782	0.474	0.477	8.1e-125
UNIPROTKB\|B7WP74		745	CWC22 "Pre-mRNA-splicing facto	0.785	0.581	0.473	1.3e-124
UNIPROTKB\|Q9HCG8		908	CWC22 "Pre-mRNA-splicing facto	0.785	0.476	0.473	1.3e-124
UNIPROTKB\|Q52KN9		803	cwc22 "Pre-mRNA-splicing facto	0.782	0.536	0.477	2.7e-124

FB\|FBgn0086707 ncm "nucampholin" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

 Score = 1154 (411.3 bits), Expect = 2.4e-142, Sum P(2) = 2.4e-142
 Identities = 241/447 (53%), Positives = 309/447 (69%)

Query:    14 KTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNI 73
             + + ++L+S+TGGAYIPPAKL++MQ  I+DKSS  YQRI+WE LKKSIHG +NKVN  NI
Sbjct:   376 RKTVDVLTSRTGGAYIPPAKLRMMQSQITDKSSAAYQRIAWEALKKSIHGYINKVNVTNI 435

Query:    74 GIIARKLFQENIIRGRGLLTRTILQAQAASPTFTNVYAALVDIINSKFPSIGELLLNRCI 133
              II R+L +ENI+RGRGLL+R+I+QAQAASPTFT+VYAALV IINSKFP+IGELLL R +
Sbjct:   436 AIITRELLRENIVRGRGLLSRSIIQAQAASPTFTHVYAALVSIINSKFPNIGELLLKRLV 495

Query:   134 QQFKRSFKRNDKALCINSVTFIAHLVNQQVAHXXXXXXXXXXXXXXPTNDSDFSLEPYSK 193
              QF+R+F+RNDK +C+++  FI HLVNQ+VAH              PT+DS   +E    
Sbjct:   496 IQFRRAFRRNDKMVCMSATRFIGHLVNQRVAHEILALEILTLLVETPTDDS---VEV--- 549

Query:   194 HKLHHLRSLMC-MPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKD 252
               +  L+   C M L  +SS +   A+       ++   +GKL+KRVQYMIEVL Q+RKD
Sbjct:   550 -AIAFLKE--CGMKLTEVSS-KGIGAIFEMLRNILH---EGKLDKRVQYMIEVLFQIRKD 602

Query:   253 NFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREI 312
              FKD   V+ +L+LV E+D+FTHLM LD   +T+DILNVF++D  Y  NE+KY  L REI
Sbjct:   603 GFKDHQAVVPELELVEEDDQFTHLMMLDEATETEDILNVFKFDDNYAENEDKYKGLSREI 662

Query:   313 LXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNKET---IIDNTETNLVALRRTIYLTIHSS 369
             L                              K     IID+TETNL+ALRRTIYLTI+SS
Sbjct:   663 LGSDDGSSSGSGSGSDSDSDSDGESGSDAEKKAEAGDIIDSTETNLIALRRTIYLTINSS 722

Query:   370 LDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFFGLLAQRFCQINK 429
             LD+EECAHKL++MQLKPGQE ELCH+  +D        +Q RTYEKF+GLLAQRFC INK
Sbjct:   723 LDYEECAHKLMKMQLKPGQEIELCHMF-LDCC-----AEQ-RTYEKFYGLLAQRFCNINK 775

Query:   430 MYVAPLEQIFRESYSTVHRLDINKLRD 456
             +Y+ P E+IF+++Y T HRLD N+LR+
Sbjct:   776 IYIPPFEEIFKDTYQTTHRLDTNRLRN 802

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB\|F1RYP5 CWC22 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|J9P9J1 CWC22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

RGD\|1565385 Cwc22 "CWC22 spliceosome-associated protein homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RIF6 CWC22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|F1MWG3 CWC22 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

MGI\|MGI:2136773 Cwc22 "CWC22 spliceosome-associated protein homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|B7WP74 CWC22 "Pre-mRNA-splicing factor CWC22 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q9HCG8 CWC22 "Pre-mRNA-splicing factor CWC22 homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|Q52KN9 cwc22 "Pre-mRNA-splicing factor CWC22 homolog" [Xenopus laevis (taxid:8355)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8C5N3	CWC22_MOUSE	No assigned EC number	0.5064	0.8747	0.5308	yes	N/A
Q9VJ87	CWC22_DROME	No assigned EC number	0.5549	0.8656	0.3586	yes	N/A
Q08C72	CWC22_DANRE	No assigned EC number	0.5036	0.8747	0.4893	yes	N/A
Q6BU84	CWC22_DEBHA	No assigned EC number	0.3521	0.8402	0.7268	yes	N/A
Q5RA93	CWC22_PONAB	No assigned EC number	0.5177	0.8656	0.5253	yes	N/A
Q9HCG8	CWC22_HUMAN	No assigned EC number	0.5186	0.8638	0.5242	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		551
pfam02854		198	pfam02854, MIF4G, MIF4G domain	3e-25
smart00543		200	smart00543, MIF4G, Middle domain of eukaryotic ini	8e-23
smart00544		113	smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and	2e-11
pfam02847		113	pfam02847, MA3, MA3 domain	3e-10
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	2e-04
pfam03066		146	pfam03066, Nucleoplasmin, Nucleoplasmin	4e-04
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.001
pfam05432		291	pfam05432, BSP_II, Bone sialoprotein II (BSP-II)	0.001
TIGR00927		1096	TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	0.002
pfam03066		146	pfam03066, Nucleoplasmin, Nucleoplasmin	0.002
pfam05764		238	pfam05764, YL1, YL1 nuclear protein	0.002
pfam09805		134	pfam09805, Nop25, Nucleolar protein 12 (25kDa)	0.002
pfam03066		146	pfam03066, Nucleoplasmin, Nucleoplasmin	0.003
PTZ00248		319	PTZ00248, PTZ00248, eukaryotic translation initiat	0.003

>gnl\|CDD\|217253 pfam02854, MIF4G, MIF4G domain	Back alignment and domain information

 Score =  102 bits (257), Expect = 3e-25
 Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 18/205 (8%)

Query: 59  KSIHGSVNKVNTGNIGIIARKLFQENII--RGRGLLTRTILQAQAASPTFTNVYAALVDI 116
           K + G +NK++  N   I  +L + N+        +   I +     P F   YA L   
Sbjct: 2   KKVKGLLNKLSPSNFEKIIDELLKLNMSDKNLLKYILELIFEKAVEEPNFIPAYARLCAG 61

Query: 117 INSKFPSIGELLLNRCIQQFKR---SFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEIL 173
           +NSK P  GELLLNR  ++F++     +R ++   +  V F+  L N +V  E I+LE L
Sbjct: 62  LNSKNPDFGELLLNRLQEEFEKGVEEEERGNRKRRLGLVRFLGELFNFKVLTEKIILECL 121

Query: 174 TLLVETPTN---DSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFS--TDVY 228
             L+E+ T      +FSLE         L  L       +   +  + ++          
Sbjct: 122 KELLESLTEEDPRDEFSLEIL-------LLLLTTCG-KLLDREKLKKLMDEILERIQKYL 173

Query: 229 NSSKGKLEKRVQYMIEVLAQVRKDN 253
            S+  +L  R+++M+E L ++RK+ 
Sbjct: 174 LSADPELSSRLRFMLEDLIELRKNK 198

MIF4G is named after Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Length = 198

>gnl\|CDD\|214713 smart00543, MIF4G, Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>gnl\|CDD\|214714 smart00544, MA3, Domain in DAP-5, eIF4G, MA-3 and other proteins	Back alignment and domain information

>gnl\|CDD\|111714 pfam02847, MA3, MA3 domain	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|145949 pfam03066, Nucleoplasmin, Nucleoplasmin	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II)	Back alignment and domain information

>gnl\|CDD\|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger	Back alignment and domain information

>gnl\|CDD\|145949 pfam03066, Nucleoplasmin, Nucleoplasmin	Back alignment and domain information

>gnl\|CDD\|218737 pfam05764, YL1, YL1 nuclear protein	Back alignment and domain information

>gnl\|CDD\|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa)	Back alignment and domain information

>gnl\|CDD\|145949 pfam03066, Nucleoplasmin, Nucleoplasmin	Back alignment and domain information

>gnl\|CDD\|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		551
KOG2140\|consensus		739		100.0
KOG2141\|consensus		822		100.0
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	99.93
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	99.93
smart00544		113	MA3 Domain in DAP-5, eIF4G, MA-3 and other protein	99.75
PF02847		113	MA3: MA3 domain; InterPro: IPR003891 This entry re	99.65
KOG0401\|consensus		970		99.4
KOG2051\|consensus		1128		99.2
KOG1104\|consensus		759		98.16
KOG2051\|consensus		1128		97.93
PF02854		209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	95.24
smart00543		200	MIF4G Middle domain of eukaryotic initiation facto	93.65
KOG2412\|consensus		591		92.58
KOG3942\|consensus		348		91.63
PF09088		191	MIF4G_like: MIF4G like; InterPro: IPR015172 This e	88.82
PF07817		256	GLE1: GLE1-like protein; InterPro: IPR012476 The m	82.89

>KOG2140\|consensus	Back alignment and domain information

Probab=100.00  E-value=6.4e-125  Score=981.35  Aligned_cols=479  Identities=59%  Similarity=0.935  Sum_probs=458.6

Q ss_pred             ccCCCCCCcccChHHhhhhhhhcCCcchhHHHHhhHHHHHHHHhHHhhhcCCCcHHHHHHHHHHHHhhhhhhHHHHHHHH
Q psy7791          19 ILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGRGLLTRTILQ   98 (551)
Q Consensus        19 ~~~~~~~~kYVPP~~~r~~~~~~~d~~see~Q~~~w~~L~r~I~glLNKLs~~Ni~~i~~eL~~~n~~~gr~ll~~~Il~   98 (551)
                      .+.++++|+||||+++|+|+++.+|+.|.+|||.+|++|+++|+|++|||+.+||..|+.|||+.|+.+|||++|++||+
T Consensus       126 l~~trtGG~YIPPaKL~~mq~qi~Dk~s~~yQRmnWEalkksInglInkvn~sNi~~ii~eLfqeNiirgRgl~crsv~~  205 (739)
T KOG2140|consen  126 LLRTRTGGAYIPPAKLRMMQAQITDKNSIEYQRMNWEALKKSINGLINKVNASNIQEIIRELFQENIIRGRGLLCRSVMQ  205 (739)
T ss_pred             HhhccCCCeecCHHHHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHhccchhHHHHHH
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCchHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhccCccchhhHHHHHHHHHhcccccHHHHHHHHHHHhc
Q psy7791          99 AQAASPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVE  178 (551)
Q Consensus        99 ~~~~~~~~~~vyAaLia~L~~~~pevG~~ll~~lv~~F~~~~~~~d~k~~~n~~~fia~Lynf~Vv~~~li~dii~~Lle  178 (551)
                      +|.++|.|+++||||+|+||+++|+||++|+.+++.+|.++|++||+-.|.|.+.|||||+|++|+|++++++|+.+||+
T Consensus       206 aq~asp~ft~vyaALvAviNskfP~IgElLlkrLilqf~r~f~RnDk~~c~~~~kfiahLinq~VahEIv~Leil~lLLe  285 (739)
T KOG2140|consen  206 AQAASPGFTPVYAALVAVINSKFPQIGELLLKRLILQFKRSFRRNDKVSCLNASKFIAHLINQQVAHEIVALEILTLLLE  285 (739)
T ss_pred             HHhcCCCCcHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcHHHHHHHHHHhhhhhhcccCccccchhhhcchHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHcCCcCCC
Q psy7791         179 TPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFP  258 (551)
Q Consensus       179 ~~te~~iEll~~lL~~~G~~LR~~dG~~L~~~~~~q~~~~l~~i~~~lr~~l~~~~~ssR~~fmie~l~dLr~n~~k~~~  258 (551)
                      .||+++||+++.+|+.|        |..|.+++    |.+++.||+|+|.|++++++++|++||||+++.+|+.+|+.+|
T Consensus       286 ~PTddSvevaI~flkec--------GakL~~VS----pr~~n~IfErlR~ILhe~Eld~rvqy~iEtlf~iRkdkfk~~p  353 (739)
T KOG2140|consen  286 RPTDDSVEVAIAFLKEC--------GAKLAEVS----PRALNGIFERLRYILHEGELDRRVQYMIETLFQIRKDKFKSHP  353 (739)
T ss_pred             CCCCchHHHHHHHHHHH--------HHHHHHhC----hHHHhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHhhccCC
Confidence            99999999999999999        99999999    9999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCcCCcceeEEecCCCCChhhhhccccCChhhhhhhhhhhhccccccCCCCCCCCCCCCCcccchhhhhh-h
Q psy7791         259 DVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEDGDDEEDEDEEESEA-E  337 (551)
Q Consensus       259 ~~~~~l~~v~~~~~~~~~~~l~~~~~~~~~L~~~~~d~~~~~~e~~~~~gkwwivG~~~~~~~~~~~~~~~~~~~~~~-~  337 (551)
                      ++.++||+|+++||+||.+.+++..+++..|++|++||+|.++|.+|+..|..|+|.+...++++++++++++++.+. +
T Consensus       354 ~v~~~LDlvee~dq~tH~l~l~de~dpe~~L~vFk~dp~f~ene~kydaikkeiLgn~dsen~d~~~~s~E~~~eee~e~  433 (739)
T KOG2140|consen  354 AVLEELDLVEEEDQITHSLSLEDEDDPEKELGVFKKDPNFEENEEKYDAIKKEILGNEDSENEDDEDGSSEDDDEEEDES  433 (739)
T ss_pred             ccccccCccchhhheeeeeecccccChhhhhcccccCccHHHHHHHHHHHHHHHhcCCcccccccccccccccccccccc
Confidence            999999999999999999999999999999999999999999999999999999999887555544444333322221 2


Q ss_pred             hhhccchhhhhhhhccccchhhhhhhhhcccCCCHHHHHHHHHccCCCCCCccchheeeeeccccccccccccccchhhH
Q psy7791         338 EGEKENKETIIDNTETNLVALRRTIYLTIHSSLDFEECAHKLLRMQLKPGQESELCHIVHIDTSLWGLFGDQLRTYEKFF  417 (551)
Q Consensus       338 ~~~~~~~~~l~d~~~mn~td~RR~If~~ImSS~d~~dA~~kLlkL~lk~~qerEi~~vl~i~C~~~~~~c~qEktyNpyY  417 (551)
                      .++.++.++|.|+|..|++++||+||++||||.||+||+|||||+.++++|+.|+|.|| |+|      |.||+||.+||
T Consensus       434 ~ee~~e~~qI~D~T~~Nlv~frr~IYLti~SSldfeEaaHKLLKmkip~~q~~elc~mi-i~c------c~QerTy~kFY  506 (739)
T KOG2140|consen  434 VEEDEEKLQIIDMTETNLVNFRRTIYLTIQSSLDFEEAAHKLLKMKIPESQEKELCNMI-IDC------CAQERTYEKFY  506 (739)
T ss_pred             cccccccceeeccccchhHHhhhhheeeeeccCcHHHHHHHHHhccCCchhhHHHHHHH-HHH------hhhHHHHHHHH
Confidence            23445688999999999999999999999999999999999999999999999999999 999      99999999999


Q ss_pred             HHHHHHHhhcchhhHHHHHHHHHHHhhhhhcccccccccchhhhhhhhhhcchhhhhhhhccccccchhhHHhhHHHHHH
Q psy7791         418 GLLAQRFCQINKMYVAPLEQIFRESYSTVHRLDINKLRDDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFA  497 (551)
Q Consensus       418 ~~la~rlC~~~~~~~~tfq~~fwd~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Nlak~~a  497 (551)
                      |+|++|||..++.||.+|..||.+.|.+||++++|+                                   |||+|||||
T Consensus       507 glL~eRfc~l~r~~q~~fe~~f~q~YstIhr~Etnk-----------------------------------LRnlakffa  551 (739)
T KOG2140|consen  507 GLLGERFCMLHREWQEAFEKCFKQQYSTIHRYETNK-----------------------------------LRNLAKFFA  551 (739)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-----------------------------------HHHHHHHHH
Confidence            999999999999999999999999999999999999                                   999999999


Q ss_pred             HHHhhCccccccccceecCccccCcchHHHHHHHHHHHHHHhcHHHHhhhhcCC
Q psy7791         498 HQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDP  551 (551)
Q Consensus       498 ~Ll~~~~l~l~vLk~i~~~e~~t~~~~riF~k~Lf~el~~~lg~~~l~~~l~~~  551 (551)
                      ||+++++|||.||++|.+||++|++++|||||+|||||+++||+++|++||+||
T Consensus       552 hLlstd~lpw~vl~~ikLTEEdTtsssRIfiKilFqELve~lGl~~L~~RL~dp  605 (739)
T KOG2140|consen  552 HLLSTDALPWDVLACIKLTEEDTTSSSRIFIKILFQELVEALGLDKLNERLNDP  605 (739)
T ss_pred             HHhcccccchHHHHHhhcccccCCccceehHHHHHHHHHHHhChHHHHHHhcCc
Confidence            999999999999999999999999999999999999999999999999999998

>KOG2141\|consensus	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins	Back alignment and domain information

>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]	Back alignment and domain information

>KOG0401\|consensus	Back alignment and domain information

>KOG2051\|consensus	Back alignment and domain information

>KOG1104\|consensus	Back alignment and domain information

>KOG2051\|consensus	Back alignment and domain information

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain	Back alignment and domain information

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)	Back alignment and domain information

>KOG2412\|consensus	Back alignment and domain information

>KOG3942\|consensus	Back alignment and domain information

>PF09088 MIF4G_like: MIF4G like; InterPro: IPR015172 This entry represents an MIF4G-like domain	Back alignment and domain information

>PF07817 GLE1: GLE1-like protein; InterPro: IPR012476 The members of this family are sequences that are similar to the human protein GLE1 (O75458 from SWISSPROT)	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		551
1h2v_C		771	80 kDa nuclear CAP binding protein; CAP-binding-co	5e-38
1hu3_A		260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	6e-14
2vso_E		284	Eukaryotic initiation factor 4F subunit P150; acet	1e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
3rk6_A		234	Polyadenylate-binding protein-interacting protein;	4e-07

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Length = 771	Back alignment and structure

 Score =  148 bits (373), Expect = 5e-38
 Identities = 58/516 (11%), Positives = 140/516 (27%), Gaps = 77/516 (14%)

Query: 50  QRISWETLKKSIHGSVNKVN-------TGNIGIIARKLFQENIIRGRGLLTRTILQAQAA 102
           +       +  +   + KV          N+  +A  + + ++   +  + R +      
Sbjct: 1   KTSDANETEDHLESLICKVGEKSACSLESNLEGLA-GVLEADLPNYKSKILRLLCTVARL 59

Query: 103 SPTFTNVYAALVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQ 162
            P    +Y  LV ++N++  + G   +   I+Q K S K N+    +  V F++ LVN  
Sbjct: 60  LPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCH 119

Query: 163 VAHEIIVLEILTLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESF 222
           V     ++ +    V     +      P  +   +    L  +P               +
Sbjct: 120 VIAAPSMVAMFENFVSVTQEEDV----PQVRRDWYVYAFLSSLP---------------W 160

Query: 223 FSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEE---DKFTHLMTL 279
              ++Y     ++++        L + +K +         D     EE     +  +  L
Sbjct: 161 VGKELYEKKDAEMDRIFANTESYLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKL 220

Query: 280 DGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEDGDDEEDEDEEESEAEEG 339
              +  +  +        YL  +       +  L          D             + 
Sbjct: 221 KKDRWQERHILRP-----YLAFDSILCEALQHNLPPFTPPPHTEDSVYPMPRVIFRMFDY 275

Query: 340 EKENKETIIDNTETNLVALRRTIYLTIHSSLDFE--ECAHKLLRMQLKPGQESELCHIVH 397
             + +  ++  + +    +       I  S   E   CA +L+    K            
Sbjct: 276 TDDPEGPVMPGSHSVERFVIEENLHCIIKSHWKERKTCAAQLVSYPGKNKIPLNYH---I 332

Query: 398 IDTSLWGLFGDQL-RTYEKFFGLLAQRFCQINKMYVAP-LEQIFRESYSTVHRLDINKLR 455
           ++     LF        +  +  L    C++    +   L Q     Y  +  ++     
Sbjct: 333 VEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMN----- 387

Query: 456 DDVCVINVVVKINGLTRLQFLYLSSNVVSNYDKLRNVAKFFAHQLFTDAIGWHVLSCIHL 515
                                            +     +F+H L      W        
Sbjct: 388 ------------------------------TTCVDRFINWFSHHLSNFQFRWSWEDWSDC 417

Query: 516 NEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDP 551
             ++  S    F++ + ++        ++   +   
Sbjct: 418 LSQDPESPKPKFVREVLEKCMRLSYHQRILDIVPPT 453

PyMOL of 1h2v

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14 Length = 260	Back alignment and structure

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E* Length = 284	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens} Length = 234	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		551
2vso_E		284	Eukaryotic initiation factor 4F subunit P150; acet	100.0
1h2v_C		771	80 kDa nuclear CAP binding protein; CAP-binding-co	100.0
1hu3_A		260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	100.0
3rk6_A		234	Polyadenylate-binding protein-interacting protein;	99.95
2i2o_A		224	EIF4G-like protein; protein structure initiative,	99.83
1uw4_B		248	UPF2, regulator of nonsense transcripts 2; nonsens	99.27
4gmj_A		229	CCR4-NOT transcription complex subunit 1; mRNA dec	94.7
3pev_B		297	Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, he	93.98
4b89_A		249	General negative regulator of transcription subun;	93.82
1ug3_A		339	EIF4GI, eukaryotic protein synthesis initiation fa	91.16
3l6a_A		364	Eukaryotic translation initiation factor 4 gamma;	88.44
1hu3_A		260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	85.39
2rg8_A		165	Programmed cell death protein 4; MA3 domain, heat	83.05

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*	Back alignment and structure

Probab=100.00  E-value=2.1e-40  Score=337.96  Aligned_cols=228  Identities=15%  Similarity=0.290  Sum_probs=179.3

Q ss_pred             CCCCcccChHHhhhhhhhcCCcchhHHHHhhHHHHHHHHhHHhhhcCCCcHHHHHHHHHHHHhh-----hh---hhHHHH
Q psy7791          23 KTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENII-----RG---RGLLTR   94 (551)
Q Consensus        23 ~~~~kYVPP~~~r~~~~~~~d~~see~Q~~~w~~L~r~I~glLNKLs~~Ni~~i~~eL~~~n~~-----~g---r~ll~~   94 (551)
                      +++|+||||+++++++.+..+.++.  |+..|++++|+|+|+|||||++||+.|+.+|+..++.     ++   ++ +++
T Consensus         4 ~s~~~w~P~~~~~~~~~~~~~~~~~--~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~~~~~~~~~~~l~~-vi~   80 (284)
T 2vso_E            4 PSANRWVPKFKSKKTEKKLAPDGKT--ELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIANISVWETNGETLKA-VIE   80 (284)
T ss_dssp             ---CCCCCC---------------C--CCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHGGGGCSBCHHHHH-HHH
T ss_pred             CCCCCCCChhhhcccccccCCCccc--ccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHhhccccCcHHHHHH-HHH
Confidence            5789999999887754332222211  4567999999999999999999999999999998873     33   44 568


Q ss_pred             HHHHHHhcCCchHHHHHHHHHHHHccCC-c--------------hHHHHHHHHHHHHHHHHhc-----------------
Q psy7791          95 TILQAQAASPTFTNVYAALVDIINSKFP-S--------------IGELLLNRCIQQFKRSFKR-----------------  142 (551)
Q Consensus        95 ~Il~~~~~~~~~~~vyAaLia~L~~~~p-e--------------vG~~ll~~lv~~F~~~~~~-----------------  142 (551)
                      .|++.++.+|+|+++||.||+.|+..+| +              |+.+|+++|+.+|++.|..                 
T Consensus        81 ~If~kA~~ep~fs~~YA~Lc~~l~~~l~~~i~~e~~~~k~g~~~Fr~~LL~rcq~eFe~~~~~~~~~~~~~~~~e~e~~~  160 (284)
T 2vso_E           81 QIFLKACDEPHWSSMYAQLCGKVVKELNPDITDETNEGKTGPKLVLHYLVARCHAEFDKGWTDKLPTNEDGTPLEPEMMS  160 (284)
T ss_dssp             HHHHHHHHCGGGHHHHHHHHHHHHHHSCTTCCBCC---CCTHHHHHHHHHHHHHHHHHHCCCSSCC------------CC
T ss_pred             HHHHHHHcCcchHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHhhhhhhhhhhccccchhhhhhhh
Confidence            8999999999999999999999998763 3              4468899999999997742                 


Q ss_pred             -------cCccchhhHHHHHHHHHhcccccHHHHHHHHHHHhc----CCCCCcHHHHHHHHHHhhhhhhcccCccccchh
Q psy7791         143 -------NDKALCINSVTFIAHLVNQQVAHEIIVLEILTLLVE----TPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWIS  211 (551)
Q Consensus       143 -------~d~k~~~n~~~fia~Lynf~Vv~~~li~dii~~Lle----~~te~~iEll~~lL~~~G~~LR~~dG~~L~~~~  211 (551)
                             ..++++.|+++||||||+++|+++.+|++||+.|++    .|+|++||++|.+|++||.+|+++++..=..  
T Consensus       161 ~e~~~~~~~k~r~lg~i~FIgeLyk~~~l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~--  238 (284)
T 2vso_E          161 EEYYAAASAKRRGLGLVRFIGFLYRLNLLTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQA--  238 (284)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHhccCCcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhccccccccc--
Confidence                   124679999999999999999999999999999997    8999999999999999988888776532111  


Q ss_pred             hhcchHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHHHHc-CCc
Q psy7791         212 SIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKD-NFK  255 (551)
Q Consensus       212 ~~q~~~~l~~i~~~lr~~l~~~~~ssR~~fmie~l~dLr~n-~~k  255 (551)
                      ....+..++.||++++.+.+++++++|+||||++|++||+| +|+
T Consensus       239 ~~~~~~~md~~f~~l~~l~~~~~ls~RirFml~dlidLR~n~~W~  283 (284)
T 2vso_E          239 TLEGSQLLDSLFGILDNIIQTAKISSRIKFKLIDIKELRHDKNWN  283 (284)
T ss_dssp             --CHHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHTSTTC
T ss_pred             chhhHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhcccCCC
Confidence            11126789999999999999999999999999999999997 996

PyMOL of 2vso

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*	Back alignment and structure

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14	Back alignment and structure

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}	Back alignment and structure

>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}	Back alignment and structure

>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14	Back alignment and structure

>4gmj_A CCR4-NOT transcription complex subunit 1; mRNA decay, deadenylase, RNA bindin; HET: GOL; 2.70A {Homo sapiens} PDB: 4gml_A	Back alignment and structure

>3pev_B Nucleoporin GLE1; RECA, heat, DEAD-BOX, ATPase, helicase, mRNA export, nuclear hydrolase; HET: IHP; 2.50A {Saccharomyces cerevisiae} PDB: 3peu_B* 3pex_B* 3pez_B* 3rrm_B* 3rrn_B*	Back alignment and structure

>4b89_A General negative regulator of transcription subun; 1.50A {Saccharomyces cerevisiae S288C} PDB: 4b8a_A 4b8c_B	Back alignment and structure

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14	Back alignment and structure

>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}	Back alignment and structure

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14	Back alignment and structure

>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		551
d1h2vc1		262	a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-bin	2e-30
d1uw4b_		248	a.118.1.14 (B:) Regulator of nonsense transcripts	3e-24
d1hu3a_		243	a.118.1.14 (A:) Eukaryotic initiation factor eIF4G	7e-19

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 262	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  117 bits (294), Expect = 2e-30
 Identities = 32/237 (13%), Positives = 82/237 (34%), Gaps = 24/237 (10%)

Query: 55  ETLKKSIHGSVNKVNTGNIGIIAR--KLFQENIIRGRGLLTRTILQAQAASPTFTNVYAA 112
           + L+  I     K        +     + + ++   +  + R +       P    +Y  
Sbjct: 1   DHLESLICKVGEKSACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTT 60

Query: 113 LVDIINSKFPSIGELLLNRCIQQFKRSFKRNDKALCINSVTFIAHLVNQQVAHEIIVLEI 172
           LV ++N++  + G   +   I+Q K S K N+    +  V F++ LVN  V     ++ +
Sbjct: 61  LVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAM 120

Query: 173 LTLLVETPTND------SDFSLE------PYSKHKLHH-----LRSLMCMPLWWISSIQS 215
               V     +       D+ +       P+   +L+      +  +      ++   Q 
Sbjct: 121 FENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDAEMDRIFANTESYLKRRQK 180

Query: 216 F-QALESFFSTDVYNSSKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEED 271
               +   ++ D  +      E+ +  +   + +++KD +++   +   L       
Sbjct: 181 THVPMLQVWTADKPHPQ----EEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILC 233

PyMOL of d1h2vc1

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]} Length = 248	Back information, alignment and structure

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		551
d1hu3a_		243	Eukaryotic initiation factor eIF4G {Human (Homo sa	99.97
d1uw4b_		248	Regulator of nonsense transcripts 2, UPF2 {Human (	99.91
d1h2vc1		262	CBP80, 80KDa nuclear cap-binding protein {Human (H	99.83
d1ug3a1		193	Eukaryotic initiation factor eIF4G {Human (Homo sa	94.42
d1hu3a_		243	Eukaryotic initiation factor eIF4G {Human (Homo sa	92.91
d1h2vc2		190	CBP80, 80KDa nuclear cap-binding protein {Human (H	92.77
d1uw4b_		248	Regulator of nonsense transcripts 2, UPF2 {Human (	82.29
d1h2vc1		262	CBP80, 80KDa nuclear cap-binding protein {Human (H	80.97

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=3.6e-31  Score=259.82  Aligned_cols=192  Identities=16%  Similarity=0.246  Sum_probs=168.3

Q ss_pred             HHHHHHHHhHHhhhcCCCcHHHHHHHHHHHHhhhhh--hHHHHHHHHHHhcCCchHHHHHHHHHHHHccCC---------
Q psy7791          54 WETLKKSIHGSVNKVNTGNIGIIARKLFQENIIRGR--GLLTRTILQAQAASPTFTNVYAALVDIINSKFP---------  122 (551)
Q Consensus        54 w~~L~r~I~glLNKLs~~Ni~~i~~eL~~~n~~~gr--~ll~~~Il~~~~~~~~~~~vyAaLia~L~~~~p---------  122 (551)
                      +++|+|+|+|+|||||++|++.|+.+|...+..+.+  ..+++.|+..++..|+|+++||.||..|+...|         
T Consensus         8 ~~~l~r~v~~lLNKLt~~n~~~i~~ei~~l~~~~~~~l~~~v~~I~~kai~e~~f~~~YA~Lc~~l~~~~~~~~~~~~~~   87 (243)
T d1hu3a_           8 TQELFRKVRSILNKLTPQMFNQLMKQVSGLTVDTEERLKGVIDLVFEKAIDEPSFSVAYANMCRCLVTLKVPMADKPGNT   87 (243)
T ss_dssp             HHHHHHHHHHHHTCSSCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHTTCCCC--------
T ss_pred             HHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHcCccccHHHHHHHHHHHHhcCccccccccc
Confidence            579999999999999999999999999988765543  347788999888899999999999999997664         


Q ss_pred             -chHHHHHHHHHHHHHHHHhcc--------------------------------CccchhhHHHHHHHHHhcccccHHHH
Q psy7791         123 -SIGELLLNRCIQQFKRSFKRN--------------------------------DKALCINSVTFIAHLVNQQVAHEIIV  169 (551)
Q Consensus       123 -evG~~ll~~lv~~F~~~~~~~--------------------------------d~k~~~n~~~fia~Lynf~Vv~~~li  169 (551)
                       +|+..|+++|+..|.......                                .+++..|+++||||||+++|+++.++
T Consensus        88 ~~F~~~Ll~~~q~~F~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~k~~~~g~i~figeLy~~~~v~~~~i  167 (243)
T d1hu3a_          88 VNFRKLLLNRCQKEFEKDKADDDVFEKKQKELEAASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIM  167 (243)
T ss_dssp             -CHHHHHHHHHHHHHHHHTC------------------------------CCSSHHHHHHHHHHHHHHHHTTTCSCHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhhHhhhcccccccchHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHccccchHHHH
Confidence             588999999999999865321                                14567899999999999999999999


Q ss_pred             HHHHHHHhcCCCCCcHHHHHHHHHHhhhhhhcccCccccchhhhcchHHHHHHHHHHHhhhcCCCchhHHHHHHHHHHHH
Q psy7791         170 LEILTLLVETPTNDSDFSLEPYSKHKLHHLRSLMCMPLWWISSIQSFQALESFFSTDVYNSSKGKLEKRVQYMIEVLAQV  249 (551)
Q Consensus       170 ~dii~~Lle~~te~~iEll~~lL~~~G~~LR~~dG~~L~~~~~~q~~~~l~~i~~~lr~~l~~~~~ssR~~fmie~l~dL  249 (551)
                      ++|++.|+.+|+|++||++|.+|++||.+||+++|           +..++.+|++++.+...+++++|+||||++|+++
T Consensus       168 ~~~l~~Ll~~~~e~~ie~l~~lL~~~G~~L~~~~~-----------~~~~~~~~~~l~~~~~~~~~s~Rirfml~~l~el  236 (243)
T d1hu3a_         168 HDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKA-----------KPRMDQYFNQMEKIVKERKTSSRIRFMLQDVIDL  236 (243)
T ss_dssp             HHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCCTTT-----------HHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhcccc-----------HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999777776554           2345679999999998899999999999999999


Q ss_pred             HHcCCcC
Q psy7791         250 RKDNFKD  256 (551)
Q Consensus       250 r~n~~k~  256 (551)
                      |+|+|+.
T Consensus       237 R~~~W~s  243 (243)
T d1hu3a_         237 RLCNWVS  243 (243)
T ss_dssp             HHTTTCC
T ss_pred             HHcCCCC
Confidence            9999973

PyMOL of d1hu3a_

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1ug3a1 a.118.1.14 (A:1235-1427) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h2vc2 a.118.1.14 (C:291-480) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure