Psyllid ID: psy7793

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310------
Protein Sequence
MKMMESLYLPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPFRPVARWKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEETNLVALRRTIYLTIHSSLDFEDCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHcccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEEcccccccHHHcccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccccHHHcEEcccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHcccccHHHHccccccccccccEEEEccc
Secondary Structure Prediction (SSPRO)
cccHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcHccHHHHHHHHHHHHHHHHHccccccccccHHcccccccccEEEEEcccccccHHccccEEcccccHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHEEEEEcccccccHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mkmmeslylpglvfHKLRNVAKFFAHQLFTDAIGWHVLSCIhlneeettssgRIFIKILFQELSEYMGlsklnqkikdpfrpvarwkgKLEKRVQYMIEVLAQVRKdnfkdfpdviedldlvpeedkfthlmtldgvkdTQDILNVFqydpeylmneeKYTTLRREilgdededdeETNLVALRRTIYLTIhssldfedCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIhlneeettssgRIFIKILFQELSEYMglsklnqkikdpllapamegvfprdnpkntrfainff
Flexible Loop (DISEMBL)
MKMMESLYLPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNeeettssgRIFIKILFQELSEYMGLSklnqkikdpfrpvarwkgkleKRVQYMIEVLAQvrkdnfkdFPDVIEDLDLVPEEDKFTHLmtldgvkdtqDILNVFQydpeylmneeKYTTLRReilgdededdeETNLVALRRTIYLTIHSSLDFEDCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNeeettssgRIFIKILFQELSEYMGLSKLNQKIKDPLLAPamegvfprdnpknTRFAINFF
Low Complexity Region (SEG)
MKMMESLYLPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPFRPVARWKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGdededdeeTNLVALRRTIYLTIHSSLDFEDCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF
Disordered region (IsUnstruct)
******LYLPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPFRPVARWKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILG********TNLVALRRTIYLTIHSSLDFEDCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLA**********************
Disordered Region (DISOPRED)
***MESLYLPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPFRPVARWKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLR**********DEETNLVALRRTIYLTIHSSLDFEDCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF
Disordered Region (DISEMBL)
MKMMESLYLPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPFRPVARWKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEETNLVALRRTIYLTIHSSLDFEDCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF
Disordered Region (DISPRO)
*KMMESLYLPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPFRPVARWKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEETNLVALRRTIYLTIHSSLDFEDCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKMMESLYLPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPFRPVARWKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDDEETNLVALRRTIYLTIHSSLDFEDCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	316	2.2.26 [Sep-21-2011]
Q9VJ87	1330	Pre-mRNA-splicing factor	yes	N/A	0.724	0.172	0.501	1e-76
Q08C72	985	Pre-mRNA-splicing factor	yes	N/A	0.727	0.233	0.456	8e-69
Q8C5N3	908	Pre-mRNA-splicing factor	yes	N/A	0.718	0.25	0.455	9e-68
Q9HCG8	908	Pre-mRNA-splicing factor	yes	N/A	0.724	0.252	0.454	1e-67
Q5RA93	908	Pre-mRNA-splicing factor	yes	N/A	0.724	0.252	0.454	1e-67
Q52KN9	803	Pre-mRNA-splicing factor	N/A	N/A	0.727	0.286	0.452	2e-67
Q4WKB9	881	Pre-mRNA-splicing factor	yes	N/A	0.718	0.257	0.461	6e-67
Q5ZKA3	926	Pre-mRNA-splicing factor	yes	N/A	0.724	0.247	0.455	5e-65
P0CM96	831	Pre-mRNA-splicing factor	yes	N/A	0.914	0.347	0.373	8e-62
P0CM97	831	Pre-mRNA-splicing factor	N/A	N/A	0.914	0.347	0.373	9e-62

>sp|Q9VJ87|CWC22_DROME Pre-mRNA-splicing factor CWC22 homolog OS=Drosophila melanogaster GN=ncm PE=1 SV=3

 Score =  286 bits (732), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 153/305 (50%), Positives = 189/305 (61%), Gaps = 76/305 (24%)

Query: 88  GKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVF 147
           GKL+KRVQYMIEVL Q+RKD FKD   V+ +L+LV E+D+FTHLM LD   +T+DILNVF
Sbjct: 583 GKLDKRVQYMIEVLFQIRKDGFKDHQAVVPELELVEEDDQFTHLMMLDEATETEDILNVF 642

Query: 148 QYDPEYLMNEEKYTTLRREILGDEDE---------------------------------D 174
           ++D  Y  NE+KY  L REILG +D                                  D
Sbjct: 643 KFDDNYAENEDKYKGLSREILGSDDGSSSGSGSGSDSDSDSDGESGSDAEKKAEAGDIID 702

Query: 175 DEETNLVALRRTIYLTIHSSLDFEDCL--------------------------------- 201
             ETNL+ALRRTIYLTI+SSLD+E+C                                  
Sbjct: 703 STETNLIALRRTIYLTINSSLDYEECAHKLMKMQLKPGQEIELCHMFLDCCAEQRTYEKF 762

Query: 202 ----------INKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLS 251
                     INK+Y+ P E+IF+++Y T HRLD N+LRNV+KFFAH LFTDAI W VL 
Sbjct: 763 YGLLAQRFCNINKIYIPPFEEIFKDTYQTTHRLDTNRLRNVSKFFAHLLFTDAISWDVLE 822

Query: 252 CIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRF 311
           CI LNE++TTSS RIFIKILFQEL+EYMGL KLN K+KD +L  ++ G+FP+DNP+NTRF
Sbjct: 823 CIQLNEDDTTSSSRIFIKILFQELAEYMGLGKLNAKLKDDVLVESIAGLFPKDNPRNTRF 882

Query: 312 AINFF 316
           +INFF
Sbjct: 883 SINFF 887

May be involved in pre-mRNA splicing.
Drosophila melanogaster (taxid: 7227)

>sp|Q08C72|CWC22_DANRE Pre-mRNA-splicing factor CWC22 homolog OS=Danio rerio GN=cwc22 PE=2 SV=1

 Score =  260 bits (665), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 140/307 (45%), Positives = 178/307 (57%), Gaps = 77/307 (25%)

Query: 87  KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 146
           + +++KRVQYMIEV+  +RKD FKD P + E LDLV EED+FTH++ L+   +T+DILNV
Sbjct: 419 ESEIDKRVQYMIEVMFAIRKDGFKDHPIIPEGLDLVEEEDQFTHMLPLEDEYNTEDILNV 478

Query: 147 FQYDPEYLMNEEKYTTLRREILGDEDE--------------------------------- 173
           F+ DP +L NEEKY T++REIL +                                    
Sbjct: 479 FKLDPNFLENEEKYKTIKREILDEGSSDSGDDAGGSGDDEDDDEEDEEAAAGEEQEKVTI 538

Query: 174 -DDEETNLVALRRTIYLTIHSSLDFEDC-------------------------------- 200
            D  E NLVA RRTIYL I SSLDFE+C                                
Sbjct: 539 FDQTEVNLVAFRRTIYLAIQSSLDFEECAHKLIKMDFPESQTKELCNMILDCCAQQRTYE 598

Query: 201 -----------LINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHV 249
                      L+ K Y+   E IF+E Y T+HRL+ NKLRNVA+ FAH L+TD++ W V
Sbjct: 599 KFFGLLAGRFCLLKKEYMESFEAIFQEQYETIHRLETNKLRNVARIFAHLLYTDSVPWSV 658

Query: 250 LSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNT 309
           L C+ ++E+ TTSS RIF+KILFQEL  YMGL KLN+++KD  L P  EG+FPRDNP+NT
Sbjct: 659 LECVRMSEDTTTSSSRIFVKILFQELCAYMGLPKLNERLKDTTLQPFFEGLFPRDNPRNT 718

Query: 310 RFAINFF 316
           RFAINFF
Sbjct: 719 RFAINFF 725

May be involved in pre-mRNA splicing.

Danio rerio (taxid: 7955)

>sp|Q8C5N3|CWC22_MOUSE Pre-mRNA-splicing factor CWC22 homolog OS=Mus musculus GN=Cwc22 PE=1 SV=1

 Score =  257 bits (656), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 139/305 (45%), Positives = 175/305 (57%), Gaps = 78/305 (25%)

Query: 90  LEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQY 149
           ++KRVQYMIEV+  VRKD FKD P ++E LDLV E+D+FTH++ L+   + +D+LNVF+ 
Sbjct: 326 IDKRVQYMIEVMFAVRKDGFKDHPVILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVFKM 385

Query: 150 DPEYLMNEEKYTTLRREIL--GDEDE---------------------------------D 174
           DP ++ NEEKY  +++EIL  GD D                                  D
Sbjct: 386 DPNFMENEEKYKAIKKEILDEGDSDSNTDQGAGSSEDEEEEDEEEEGEDEEGGQKVTIHD 445

Query: 175 DEETNLVALRRTIYLTIHSSLDFEDC---------------------------------- 200
             E NLV+ RRTIYL I SSLDFE+C                                  
Sbjct: 446 KTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFAESQTKELCNMILDCCAQQRTYEKF 505

Query: 201 ---------LINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLS 251
                    ++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD++ W VL 
Sbjct: 506 FGLLAGRFCMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLE 565

Query: 252 CIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRF 311
           CI L+EE TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  EG+ PRDNP+NTRF
Sbjct: 566 CIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRF 625

Query: 312 AINFF 316
           AINFF
Sbjct: 626 AINFF 630

May be involved in pre-mRNA splicing.

Mus musculus (taxid: 10090)

>sp|Q9HCG8|CWC22_HUMAN Pre-mRNA-splicing factor CWC22 homolog OS=Homo sapiens GN=CWC22 PE=1 SV=3

 Score =  256 bits (655), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 139/306 (45%), Positives = 176/306 (57%), Gaps = 77/306 (25%)

Query: 88  GKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVF 147
            +++KRVQYMIEV+  VRKD FKD P ++E LDLV E+D+FTH++ L+   + +D+LNVF
Sbjct: 326 SEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVF 385

Query: 148 QYDPEYLMNEEKYTTLRREIL--GDEDE-------------------------------- 173
           + DP ++ NEEKY  +++EIL  GD D                                 
Sbjct: 386 KMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQKVTIH 445

Query: 174 DDEETNLVALRRTIYLTIHSSLDFEDC--------------------------------- 200
           D  E NLV+ RRTIYL I SSLDFE+C                                 
Sbjct: 446 DKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQRTYEK 505

Query: 201 ----------LINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVL 250
                     ++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD++ W VL
Sbjct: 506 FFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVL 565

Query: 251 SCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTR 310
            CI L+EE TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  EG+ PRDNP+NTR
Sbjct: 566 ECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTR 625

Query: 311 FAINFF 316
           FAINFF
Sbjct: 626 FAINFF 631

May be involved in pre-mRNA splicing.

Homo sapiens (taxid: 9606)

>sp|Q5RA93|CWC22_PONAB Pre-mRNA-splicing factor CWC22 homolog OS=Pongo abelii GN=CWC22 PE=2 SV=1

 Score =  256 bits (654), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 139/306 (45%), Positives = 176/306 (57%), Gaps = 77/306 (25%)

Query: 88  GKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVF 147
            +++KRVQYMIEV+  VRKD FKD P ++E LDLV E+D+FTH++ L+   + +D+LNVF
Sbjct: 326 SEIDKRVQYMIEVMFAVRKDGFKDHPIILEGLDLVEEDDQFTHMLPLEDDYNPEDVLNVF 385

Query: 148 QYDPEYLMNEEKYTTLRREIL--GDEDE-------------------------------- 173
           + DP ++ NEEKY  +++EIL  GD D                                 
Sbjct: 386 KMDPNFMENEEKYKAIKKEILDEGDTDSNTDQDAGSSEEDEEEEEEEGEEDEEGQKVTIH 445

Query: 174 DDEETNLVALRRTIYLTIHSSLDFEDC--------------------------------- 200
           D  E NLV+ RRTIYL I SSLDFE+C                                 
Sbjct: 446 DKTEINLVSFRRTIYLAIQSSLDFEECAHKLLKMEFPESQTKELCNMILDCCAQQRTYEK 505

Query: 201 ----------LINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVL 250
                     ++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD++ W VL
Sbjct: 506 FFGLLAGRFCMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVL 565

Query: 251 SCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTR 310
            CI L+EE TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  EG+ PRDNP+NTR
Sbjct: 566 ECIKLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTR 625

Query: 311 FAINFF 316
           FAINFF
Sbjct: 626 FAINFF 631

May be involved in pre-mRNA splicing.

Pongo abelii (taxid: 9601)

>sp|Q52KN9|CWC22_XENLA Pre-mRNA-splicing factor CWC22 homolog OS=Xenopus laevis GN=cwc22 PE=2 SV=1

 Score =  256 bits (653), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 139/307 (45%), Positives = 177/307 (57%), Gaps = 77/307 (25%)

Query: 87  KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 146
           + +++KRVQYMIEV+  VRKD FKD P + E LDLV EED+FTH++ L+   + +D+LNV
Sbjct: 372 ESEIDKRVQYMIEVMFAVRKDGFKDHPVIPEGLDLVEEEDQFTHMLPLEDDYNQEDVLNV 431

Query: 147 FQYDPEYLMNEEKYTTLRREILGDEDEDDE------------------------------ 176
           F+ DP++L NEEKY  +++EIL + D D E                              
Sbjct: 432 FKMDPDFLENEEKYKAIKKEILDEGDSDSEGDANEGSEDESEEEEEDGQEAGTEGEKMTI 491

Query: 177 ----ETNLVALRRTIYLTIHSSLDFEDC-------------------------------- 200
               E NLVA RRTIYL I SSLDFE+C                                
Sbjct: 492 HDKTEVNLVAFRRTIYLAIQSSLDFEECAHKLIKMDFPESQTKELCNMILDCCAQQRTYE 551

Query: 201 -----------LINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHV 249
                      L+ K Y+   E IF+E + T+HRL+ NKLRNVAK FAH L+TD++ W V
Sbjct: 552 KFFGLLAGRFCLLKKEYLEAFENIFKEQFETIHRLETNKLRNVAKMFAHLLYTDSLPWSV 611

Query: 250 LSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNT 309
           L C++L+EE TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  +G+ P DNPKNT
Sbjct: 612 LECMNLSEETTTSSSRIFVKIFFQELCEYMGLPKLNARLKDVTLQPFFQGLLPMDNPKNT 671

Query: 310 RFAINFF 316
           RFAINFF
Sbjct: 672 RFAINFF 678

May be involved in pre-mRNA splicing.

Xenopus laevis (taxid: 8355)

>sp|Q4WKB9|CWC22_ASPFU Pre-mRNA-splicing factor cwc22 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=cwc22 PE=3 SV=1

 Score =  254 bits (649), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 136/295 (46%), Positives = 179/295 (60%), Gaps = 68/295 (23%)

Query: 90  LEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQY 149
           ++KRVQYMIEVL QVRKD +KD P + ++LDLV EED+ TH + LD   DTQD LNVF+Y
Sbjct: 310 IDKRVQYMIEVLFQVRKDRYKDNPAIKDELDLVEEEDQITHRIGLDDEIDTQDGLNVFKY 369

Query: 150 DPEYLMNEEKYTTLRREILGD-------------------------EDEDDEETNLVALR 184
           DP++  +EE Y  L+ EILG+                         E +D   T+LV LR
Sbjct: 370 DPQWEEHEEAYKKLKAEILGEGSDDDEEDEDETDESSDEEEEERQMEIKDQSNTDLVNLR 429

Query: 185 RTIYLTIHSSLDFEDCL------------------------------------------- 201
           RTIYLTI SS+DFE+C                                            
Sbjct: 430 RTIYLTIMSSIDFEECCHKLMKISLPPGLEPELPSMIIECCSQERTYSKFYGLIGERFAK 489

Query: 202 INKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETT 261
           IN+++    E  F + Y T+HR + N+LRN+A+FF H L TDAIGWHV+S IHLNE+ETT
Sbjct: 490 INRLWSDLFEAAFAKYYDTIHRYETNRLRNIARFFGHMLSTDAIGWHVMSVIHLNEDETT 549

Query: 262 SSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
           SS RIFIKILFQ+L E++GL+KL ++++D +L P+ EG+FP DNP+NTRF+IN+F
Sbjct: 550 SSSRIFIKILFQDLGEHLGLAKLQERMRDEILRPSFEGLFPLDNPRNTRFSINYF 604

Involved in pre-mRNA splicing.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|Q5ZKA3|CWC22_CHICK Pre-mRNA-splicing factor CWC22 homolog OS=Gallus gallus GN=CWC22 PE=2 SV=2

 Score =  248 bits (633), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 138/303 (45%), Positives = 171/303 (56%), Gaps = 74/303 (24%)

Query: 88  GKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVF 147
            K++ RVQYMIEV+  VRKD FKD P + E LDLV EED+FTH++ L+   + +D+LNVF
Sbjct: 332 SKIDMRVQYMIEVMFAVRKDGFKDHPIIPEGLDLVEEEDQFTHMLPLEDEYNPEDVLNVF 391

Query: 148 QYDPEYLMNEEKYTTLRREILGDEDEDDE------------------------------- 176
           + DP ++ NEEKY  L++EIL + D + E                               
Sbjct: 392 KMDPNFMENEEKYKALKKEILDEGDSESEPDQEAGSSDEEEEEDEEEDEDGQKVTVHDKT 451

Query: 177 ETNLVALRRTIYLTIHSSLDFEDC------------------------------------ 200
           E NLV    TIYL I SSLDFE+C                                    
Sbjct: 452 EINLVPSVGTIYLAIQSSLDFEECAHKLLKMDFPESQTKELCNMILDCCAQQRTYEKFFG 511

Query: 201 -------LINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCI 253
                  ++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD+I W VL CI
Sbjct: 512 LLAGRFCMLKKEYMESFEAIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSIPWSVLECI 571

Query: 254 HLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAI 313
            L+EE TTSS RIF+KI FQELSEYMGL  LN ++KD  L P  EG+ PRDNP+NTRFAI
Sbjct: 572 ILSEETTTSSSRIFVKIFFQELSEYMGLPNLNARLKDITLQPFFEGLLPRDNPRNTRFAI 631

Query: 314 NFF 316
           NFF
Sbjct: 632 NFF 634

May be involved in pre-mRNA splicing.

Gallus gallus (taxid: 9031)

>sp|P0CM96|CWC22_CRYNJ Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=CWC22 PE=3 SV=1

 Score =  237 bits (605), Expect = 8e-62,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 200/367 (54%), Gaps = 78/367 (21%)

Query: 22  KFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPFR 81
           ++ AH++    I   +L C+    +++      F++ + Q LSE     K N  + + FR
Sbjct: 277 QYVAHEIVALQI---LLLCLDRPTDDSIEVAVGFMREVGQFLSE--NSPKANNTVFERFR 331

Query: 82  PVARWKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQ 141
            V   +G++ KR QYMIEVL QVRKD +KD P V E LDLV EE++ TH +TLD     Q
Sbjct: 332 AVLH-EGQISKRCQYMIEVLFQVRKDKYKDNPAVPEGLDLVEEEEQITHRVTLDDELQVQ 390

Query: 142 DILNVFQYDPEYLMNEEKYTTLRREILGDED----------------------------- 172
           + LN+F+ DP ++ NEE+Y  ++REILGD D                             
Sbjct: 391 ESLNLFKADPNFVQNEERYNAIKREILGDSDDESGTESGSEYSESEDDEDEDVAPEKAGI 450

Query: 173 EDDEETNLVALRRTIYLTIHSSLDFED--------------------------------- 199
           +D  ETNL+ LRRTIYLTI +SL+FE+                                 
Sbjct: 451 QDMTETNLINLRRTIYLTIMNSLNFEEAVHKLMKVNIPEGREIELCNMVIECCSQERTYS 510

Query: 200 ----------CLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHV 249
                     C +++++    ++ F++ Y T+HR + NKLRN+ +FF H L +D I W V
Sbjct: 511 NFYGLIGERFCKLHRIWTDAFQEAFQKYYDTIHRYETNKLRNIGRFFGHLLASDGISWAV 570

Query: 250 LSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNT 309
           L  +H+NEEETTSS RIF+KI+ QE+ E MG++++ ++ + P L PA  G+FP DNPKN 
Sbjct: 571 LHVVHMNEEETTSSSRIFVKIVLQEMVEEMGINRVAERFRIPDLKPAFAGMFPMDNPKNA 630

Query: 310 RFAINFF 316
           RF+IN+F
Sbjct: 631 RFSINYF 637

Involved in pre-mRNA splicing.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CM97|CWC22_CRYNB Pre-mRNA-splicing factor CWC22 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=CWC22 PE=3 SV=1

 Score =  237 bits (604), Expect = 9e-62,   Method: Compositional matrix adjust.
 Identities = 137/367 (37%), Positives = 200/367 (54%), Gaps = 78/367 (21%)

Query: 22  KFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPFR 81
           ++ AH++    I   +L C+    +++      F++ + Q LSE     K N  + + FR
Sbjct: 277 QYVAHEIVALQI---LLLCLDRPTDDSIEVAVGFMREVGQFLSE--NSPKANNTVFERFR 331

Query: 82  PVARWKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQ 141
            V   +G++ KR QYMIEVL QVRKD +KD P V E LDLV EE++ TH +TLD     Q
Sbjct: 332 AVL-HEGQISKRCQYMIEVLFQVRKDKYKDNPAVPEGLDLVEEEEQITHRVTLDDELQVQ 390

Query: 142 DILNVFQYDPEYLMNEEKYTTLRREILGDED----------------------------- 172
           + LN+F+ DP ++ NEE+Y  ++REILGD D                             
Sbjct: 391 ESLNLFKADPNFVQNEERYNAIKREILGDSDDESGTESGSEYSESEDDEDEDVAPEKAGI 450

Query: 173 EDDEETNLVALRRTIYLTIHSSLDFED--------------------------------- 199
           +D  ETNL+ LRRTIYLTI +SL+FE+                                 
Sbjct: 451 QDMTETNLINLRRTIYLTIMNSLNFEEAVHKLMKVNIPEGREIELCNMVIECCSQERTYS 510

Query: 200 ----------CLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHV 249
                     C +++++    ++ F++ Y T+HR + NKLRN+ +FF H L +D I W V
Sbjct: 511 NFYGLIGERFCKLHRIWTDAFQEAFQKYYDTIHRYETNKLRNIGRFFGHLLASDGISWAV 570

Query: 250 LSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNT 309
           L  +H+NEEETTSS RIF+KI+ QE+ E MG++++ ++ + P L PA  G+FP DNPKN 
Sbjct: 571 LHVVHMNEEETTSSSRIFVKIVLQEMVEEMGINRVAERFRIPDLKPAFAGMFPMDNPKNA 630

Query: 310 RFAINFF 316
           RF+IN+F
Sbjct: 631 RFSINYF 637

Involved in pre-mRNA splicing.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
340721736	633	PREDICTED: pre-mRNA-splicing factor CWC2	0.727	0.363	0.557	3e-82
383849238	750	PREDICTED: pre-mRNA-splicing factor CWC2	0.727	0.306	0.547	4e-82
350406897	633	PREDICTED: pre-mRNA-splicing factor CWC2	0.727	0.363	0.557	4e-82
328711239	988	PREDICTED: pre-mRNA-splicing factor CWC2	0.724	0.231	0.514	1e-81
328779011	687	PREDICTED: pre-mRNA-splicing factor CWC2	0.727	0.334	0.546	2e-81
307199307	770	Nucampholin [Harpegnathos saltator]	0.727	0.298	0.542	9e-81
158297380	971	AGAP007874-PA [Anopheles gambiae str. PE	0.813	0.264	0.487	1e-80
322796279	728	hypothetical protein SINV_80645 [Solenop	0.727	0.315	0.539	2e-79
307173007	734	Nucampholin [Camponotus floridanus]	0.727	0.313	0.536	5e-79
157108499	845	cell cycle control protein cwf22 [Aedes	0.813	0.304	0.479	4e-78

>gi|340721736|ref|XP_003399271.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Bombus terrestris]

 Score =  311 bits (797), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 169/303 (55%), Positives = 195/303 (64%), Gaps = 73/303 (24%)

Query: 87  KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 146
           +G+L+KRVQYMIEV+ QVRKD FKD   V E+LDLV EE++FTHL+TLD   D+QDILNV
Sbjct: 221 EGQLDKRVQYMIEVIFQVRKDGFKDHEAVPEELDLVEEENQFTHLITLDEATDSQDILNV 280

Query: 147 FQYDPEYLMNEEKYTTLRREIL----------------------------GDED--EDDE 176
           F++D EY+ NE+KY  L +EIL                            G ED   D+ 
Sbjct: 281 FKFDAEYINNEDKYKELSKEILNSDVSGSESEEEDDEEESSDEDSTAVAEGKEDIIVDNT 340

Query: 177 ETNLVALRRTIYLTIHSSLDFEDCL----------------------------------- 201
           ETNL ALRRTIYLTIHSSLDFE+C                                    
Sbjct: 341 ETNLTALRRTIYLTIHSSLDFEECAHKLMKMQLKPGQETELCHMFLDCCAEMRTYEKFFG 400

Query: 202 --------INKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCI 253
                   INKMYV P EQIF++SY T+HRLD NKLRNV+KFFAH LFTD+I W VLSCI
Sbjct: 401 LLAGRFCAINKMYVTPFEQIFQDSYHTIHRLDTNKLRNVSKFFAHLLFTDSISWEVLSCI 460

Query: 254 HLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAI 313
            L EE+TTSS RIFIKILFQELSEYMGLSKLNQ++KD  L  A EG+FPRD+PKNTRFAI
Sbjct: 461 KLTEEDTTSSNRIFIKILFQELSEYMGLSKLNQRVKDVTLKNAFEGLFPRDDPKNTRFAI 520

Query: 314 NFF 316
           NFF
Sbjct: 521 NFF 523

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383849238|ref|XP_003700252.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Megachile rotundata]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 166/303 (54%), Positives = 194/303 (64%), Gaps = 73/303 (24%)

Query: 87  KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 146
           +G+L+KRVQYMIEV+ QVRKD FKD   V ++LDLV EE++FTHL+TLD   D+QDILNV
Sbjct: 337 EGQLDKRVQYMIEVMFQVRKDGFKDHEAVPDELDLVEEENQFTHLVTLDEATDSQDILNV 396

Query: 147 FQYDPEYLMNEEKYTTLRREILGDEDE------------------------------DDE 176
           F++D EY+ NE+KY  L +EILG +                                D+ 
Sbjct: 397 FKFDAEYVNNEDKYKQLSKEILGSDVSGSESEEDDEEETSDEDSSTAVTEGKEDVIVDNT 456

Query: 177 ETNLVALRRTIYLTIHSSLDFEDCL----------------------------------- 201
           ETNL ALRRTIYLTIHSSLDFE+C                                    
Sbjct: 457 ETNLTALRRTIYLTIHSSLDFEECAHKLMKMQLKPGQETELCHMFLDCCAEMRTYEKFFG 516

Query: 202 --------INKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCI 253
                   INK+YV P EQIFR+SY T+HRLD NKLRNV+KFFAH LFTD+I W VLSCI
Sbjct: 517 LLAGRFCAINKIYVTPFEQIFRDSYHTIHRLDTNKLRNVSKFFAHLLFTDSISWEVLSCI 576

Query: 254 HLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAI 313
            L EE+TTSS RIFIKILFQELSEYMGLSKLNQ++KD  L  A EG+FPRD+PKNTRFAI
Sbjct: 577 KLTEEDTTSSNRIFIKILFQELSEYMGLSKLNQRVKDVTLQHAFEGLFPRDDPKNTRFAI 636

Query: 314 NFF 316
           NFF
Sbjct: 637 NFF 639

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350406897|ref|XP_003487916.1| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Bombus impatiens]

 Score =  310 bits (795), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 169/303 (55%), Positives = 195/303 (64%), Gaps = 73/303 (24%)

Query: 87  KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 146
           +G+L+KRVQYMIEV+ QVRKD FKD   V E+LDLV EE++FTHL+TLD   D+QDILNV
Sbjct: 221 EGQLDKRVQYMIEVIFQVRKDGFKDHEAVPEELDLVEEENQFTHLITLDEATDSQDILNV 280

Query: 147 FQYDPEYLMNEEKYTTLRREIL----------------------------GDED--EDDE 176
           F++D EY+ NE+KY  L +EIL                            G ED   D+ 
Sbjct: 281 FKFDAEYINNEDKYKELSKEILNSDVSGSESEEEDDEEESSDEDSTAVAEGKEDIIVDNT 340

Query: 177 ETNLVALRRTIYLTIHSSLDFEDCL----------------------------------- 201
           ETNL ALRRTIYLTIHSSLDFE+C                                    
Sbjct: 341 ETNLTALRRTIYLTIHSSLDFEECAHKLMKMQLKPGQETELCHMFLDCCAEMRTYEKFFG 400

Query: 202 --------INKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCI 253
                   INKMYV P EQIF++SY T+HRLD NKLRNV+KFFAH LFTD+I W VLSCI
Sbjct: 401 LLAGRFCAINKMYVTPFEQIFQDSYHTIHRLDTNKLRNVSKFFAHLLFTDSISWEVLSCI 460

Query: 254 HLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAI 313
            L EE+TTSS RIFIKILFQELSEYMGLSKLNQ++KD  L  A EG+FPRD+PKNTRFAI
Sbjct: 461 KLTEEDTTSSNRIFIKILFQELSEYMGLSKLNQRVKDVTLKHAFEGLFPRDDPKNTRFAI 520

Query: 314 NFF 316
           NFF
Sbjct: 521 NFF 523

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328711239|ref|XP_001943019.2| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Acyrthosiphon pisum]

 Score =  309 bits (792), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 159/309 (51%), Positives = 200/309 (64%), Gaps = 80/309 (25%)

Query: 88  GKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVF 147
           G+L+KRVQYMIEV+ Q+RKD FKD P VIE LDLVPEED+FTHL+TLD  KDTQDILNV+
Sbjct: 388 GQLDKRVQYMIEVMFQIRKDGFKDHPAVIEQLDLVPEEDQFTHLLTLDSAKDTQDILNVY 447

Query: 148 QYDPEYLMNEEKYTTLRREILGDEDEDDE------------------------------- 176
           ++D ++  NEE+Y +LR EILG ++EDD                                
Sbjct: 448 KFDTDFESNEERYKSLRAEILGSDNEDDSASENEGDDDDDDDDDDDDDEDNGEEKEGEGK 507

Query: 177 ------ETNLVALRRTIYLTIHSSLDFEDCL----------------------------- 201
                 ETN+++LR+TIYLTIHSSLD+E+C                              
Sbjct: 508 VIIDNTETNMISLRKTIYLTIHSSLDYEECAHKLMKMQLKPGQEIEMCHMFLDCCGEQRT 567

Query: 202 --------------INKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGW 247
                         IN +++ PLE+IF +SY+TVHRL+ NKLRNVA+FFAH LFTD+I W
Sbjct: 568 YEKFFGLLAQRFCQINNVFIEPLEKIFIDSYATVHRLETNKLRNVARFFAHLLFTDSISW 627

Query: 248 HVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPK 307
            VLS IHLNEEETTSS RI+IKILFQEL+E+MGL+KLN ++++P L  A EG+FP+DNPK
Sbjct: 628 AVLSTIHLNEEETTSSSRIYIKILFQELAEHMGLNKLNARVQNPELKLAFEGIFPKDNPK 687

Query: 308 NTRFAINFF 316
           NTRF+INFF
Sbjct: 688 NTRFSINFF 696

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779011|ref|XP_001120152.2| PREDICTED: pre-mRNA-splicing factor CWC22 homolog [Apis mellifera]

 Score =  308 bits (790), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 166/304 (54%), Positives = 194/304 (63%), Gaps = 74/304 (24%)

Query: 87  KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 146
           +G+L+KRVQYMIEV+ QVRKD FKD   V E+LDLV EE++FTHL+TLD   D+QDILNV
Sbjct: 252 EGQLDKRVQYMIEVMFQVRKDGFKDHEAVAEELDLVEEENQFTHLITLDEATDSQDILNV 311

Query: 147 FQYDPEYLMNEEKYTTLRREILGDEDE-------------------------------DD 175
           F++D EY+ NE+KY  L +EILG +                                 D+
Sbjct: 312 FKFDGEYINNEDKYKQLSKEILGSDISDSENEEEDDEEESSDEDSSTAATEGKEGVIVDN 371

Query: 176 EETNLVALRRTIYLTIHSSLDFEDCL---------------------------------- 201
            ETNL ALRRTIYLTIHSSLDFE+C                                   
Sbjct: 372 TETNLTALRRTIYLTIHSSLDFEECAHKLMKMQLKPGQETELCHMFLDCCAEMRTYEKFF 431

Query: 202 ---------INKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSC 252
                    INK+YV P EQIF++SY T+HRLD NKLRNV+KFFAH LFTD+I W VLSC
Sbjct: 432 GLLAGRFCAINKIYVTPFEQIFQDSYHTIHRLDTNKLRNVSKFFAHLLFTDSISWEVLSC 491

Query: 253 IHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFA 312
           I L EE+TTSS RIFIKILFQELSEYMGLSKLNQ++KD  L  A EG+FPRD+PKNTRFA
Sbjct: 492 IKLTEEDTTSSNRIFIKILFQELSEYMGLSKLNQRVKDITLQHAFEGLFPRDDPKNTRFA 551

Query: 313 INFF 316
           INFF
Sbjct: 552 INFF 555

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307199307|gb|EFN79960.1| Nucampholin [Harpegnathos saltator]

 Score =  306 bits (783), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 165/304 (54%), Positives = 192/304 (63%), Gaps = 74/304 (24%)

Query: 87  KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 146
           +G+L+KRVQYMIEV+ Q+RKD FKD   V ++LDLV EE +FTHL+TLD V D QDILNV
Sbjct: 346 EGQLDKRVQYMIEVMFQIRKDGFKDHEAVPDELDLVEEESQFTHLITLDEVTDAQDILNV 405

Query: 147 FQYDPEYLMNEEKYTTLRREILGDEDE-------------------------------DD 175
           F++D EYL NE+KY  L +EILG +                                 D+
Sbjct: 406 FKFDAEYLANEDKYKQLSKEILGSDVSDSEAEEEDGEDESSDEDSGAEQTEGKEGVILDN 465

Query: 176 EETNLVALRRTIYLTIHSSLDFEDCL---------------------------------- 201
            ETNL ALRRTIYLTIHSSLDFE+C                                   
Sbjct: 466 TETNLTALRRTIYLTIHSSLDFEECAHKLMKMQLKPGQEIELCHMFLDCCAEMRTYEKFF 525

Query: 202 ---------INKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSC 252
                    INK+YV P EQIF++SY T+HRLD NKLRNV+KFFAH LFTD+I W VLSC
Sbjct: 526 GLLAGRFCSINKIYVTPFEQIFKDSYHTIHRLDTNKLRNVSKFFAHLLFTDSISWSVLSC 585

Query: 253 IHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFA 312
           I LNEE+TTSS RIFIKILFQELSE MGLSKLNQ++KD  L    EG+FPRD+PKNTRFA
Sbjct: 586 IKLNEEDTTSSSRIFIKILFQELSENMGLSKLNQRVKDVTLQEVFEGLFPRDDPKNTRFA 645

Query: 313 INFF 316
           INFF
Sbjct: 646 INFF 649

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297380|ref|XP_317618.4| AGAP007874-PA [Anopheles gambiae str. PEST] gi|157015167|gb|EAA12244.4| AGAP007874-PA [Anopheles gambiae str. PEST]

 Score =  306 bits (783), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 170/349 (48%), Positives = 211/349 (60%), Gaps = 92/349 (26%)

Query: 55  FIKILFQELSEYMG--LSKLNQKIKDPFRPVARWKGKLEKRVQYMIEVLAQVRKDNFKDF 112
           F+K + Q+L+E  G  ++ + + +K+        +GKL+KRVQYMIEV+ Q+RKD FKD 
Sbjct: 355 FLKEVGQKLTEVSGKGINAIFEMLKNIL-----HEGKLDKRVQYMIEVVFQIRKDGFKDH 409

Query: 113 PDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDED 172
             VI+ L+LV E+D+FTHL+ LD   DTQDILNVF+ DPEY +NE KY  + REILG + 
Sbjct: 410 VAVIDALELVEEDDQFTHLIMLDEATDTQDILNVFKVDPEYEVNETKYKEISREILGSDA 469

Query: 173 EDDE------------------------------------------ETNLVALRRTIYLT 190
           EDDE                                          ETNL+ALRRTIYLT
Sbjct: 470 EDDEDGDKSGDSSSGDSDDSDDDEADSDSDDGDNAKQKQDTIIDNTETNLIALRRTIYLT 529

Query: 191 IHSSLDFEDC-------------------------------------------LINKMYV 207
           IHSSLD+E+C                                           +INK+Y+
Sbjct: 530 IHSSLDYEECAHKLMKMELKPGQEQELCHMFLDCCAEQRTYEKFYGLLAQRFCMINKIYI 589

Query: 208 APLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIF 267
           AP EQIF ++Y+T HRLD N+LRNV+KFFAH LFTD+IGW VL CI LNEE+TTSS RIF
Sbjct: 590 APFEQIFHDTYTTTHRLDTNRLRNVSKFFAHLLFTDSIGWDVLQCIRLNEEDTTSSSRIF 649

Query: 268 IKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
           IKILFQEL+EYMGL KLN ++KDP L     G+FPRDNPKNTRFAIN+F
Sbjct: 650 IKILFQELAEYMGLFKLNARLKDPTLQEPFSGLFPRDNPKNTRFAINYF 698

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322796279|gb|EFZ18855.1| hypothetical protein SINV_80645 [Solenopsis invicta]

 Score =  302 bits (773), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 164/304 (53%), Positives = 191/304 (62%), Gaps = 74/304 (24%)

Query: 87  KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 146
           +G+L+KRVQYMIEV+ QVRKD FKD   V E+LDLV EE++ THL+ LD   + QDILNV
Sbjct: 350 EGQLDKRVQYMIEVIFQVRKDGFKDHEAVPEELDLVEEENQITHLIKLDDEINAQDILNV 409

Query: 147 FQYDPEYLMNEEKYTTLRREILGDEDE-------------------------------DD 175
           F++DP+YL  EEKY  L +EILG +                                 D+
Sbjct: 410 FKFDPDYLATEEKYKQLCKEILGSDVSDSEGDDEDGEGESSDEESGTEQTEGKEGIIVDN 469

Query: 176 EETNLVALRRTIYLTIHSSLDFEDCL---------------------------------- 201
            ETNL ALRRTIYLTIHSSLDFE+C                                   
Sbjct: 470 TETNLTALRRTIYLTIHSSLDFEECAHKLMKMQLKPGQEIELCHMFLDCCAEMRTYEKFF 529

Query: 202 ---------INKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSC 252
                    INKMYV P EQIFR+SY T+HRLD NKLRNV+KFFAH LFTD+I W VLSC
Sbjct: 530 GLLAGRFCAINKMYVTPFEQIFRDSYQTIHRLDTNKLRNVSKFFAHLLFTDSISWSVLSC 589

Query: 253 IHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFA 312
           I LNEE+TTSS RIFIKILFQELSEYMGL+KLN+++KD  L    EG+FPRD+PKNTRFA
Sbjct: 590 IKLNEEDTTSSNRIFIKILFQELSEYMGLAKLNERVKDITLQEVFEGLFPRDDPKNTRFA 649

Query: 313 INFF 316
           INFF
Sbjct: 650 INFF 653

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307173007|gb|EFN64149.1| Nucampholin [Camponotus floridanus]

 Score =  300 bits (769), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 163/304 (53%), Positives = 190/304 (62%), Gaps = 74/304 (24%)

Query: 87  KGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNV 146
           +G+L+KRVQYMIEV+ Q+RKD FKD   V ++LDLV EED+ THL+ LD   D QDILNV
Sbjct: 323 EGQLDKRVQYMIEVMFQIRKDGFKDHEAVPQELDLVEEEDQITHLIRLDDEMDMQDILNV 382

Query: 147 FQYDPEYLMNEEKYTTLRREILGDEDE-------------------------------DD 175
           F++D  YL +EEKY  L +EILG +                                 D+
Sbjct: 383 FKFDATYLESEEKYKQLCKEILGSDVSDSEDNDENEEEESSDEDSSAEQAEGKKDVIFDN 442

Query: 176 EETNLVALRRTIYLTIHSSLDFEDCL---------------------------------- 201
            ETNL ALRRTIYLTIHSSLDFE+C                                   
Sbjct: 443 TETNLTALRRTIYLTIHSSLDFEECAHKLMKMQLKPGQEIELCHMFLDCCAEMRTYEKFF 502

Query: 202 ---------INKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSC 252
                    INKMYV P EQIF++SY T+HRLD NKLRNV+KFFAH LFTD+I W VLSC
Sbjct: 503 GLLAGRFCAINKMYVTPFEQIFKDSYHTIHRLDTNKLRNVSKFFAHLLFTDSISWSVLSC 562

Query: 253 IHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFA 312
           I LNEE+TTSS RIFIKILFQELSEYMGL KLN+++KDP L    EG+FPRD+PKNTRFA
Sbjct: 563 IKLNEEDTTSSNRIFIKILFQELSEYMGLVKLNERVKDPTLQEVFEGLFPRDDPKNTRFA 622

Query: 313 INFF 316
           INFF
Sbjct: 623 INFF 626

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157108499|ref|XP_001650254.1| cell cycle control protein cwf22 [Aedes aegypti] gi|108884014|gb|EAT48239.1| AAEL000707-PA [Aedes aegypti]

 Score =  297 bits (760), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 166/346 (47%), Positives = 208/346 (60%), Gaps = 89/346 (25%)

Query: 55  FIKILFQELSEYMG--LSKLNQKIKDPFRPVARWKGKLEKRVQYMIEVLAQVRKDNFKDF 112
           F+K + Q+L+E  G  ++ + + +K+        +GKL+KRVQYMIEV+ Q+RKD FKD 
Sbjct: 318 FLKEVGQKLTEVSGKGINAIFEMLKNILH-----EGKLDKRVQYMIEVVFQIRKDGFKDH 372

Query: 113 PDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDE- 171
             V+E L+LV E+D+FTHL+ LD   D QDILNVF+ D EY  NE KY  + +EILG + 
Sbjct: 373 TAVVEALELVEEDDQFTHLIMLDEATDAQDILNVFKVDNEYEENESKYKAISKEILGSDA 432

Query: 172 -------------------------------DE-------DDEETNLVALRRTIYLTIHS 193
                                          DE       D+ ETNL+ALRRTIYLTIHS
Sbjct: 433 SDDEDGGGSSSGSGSGSDSDDEDASGSGEEGDETKQQLIVDNTETNLIALRRTIYLTIHS 492

Query: 194 SLDFEDC-------------------------------------------LINKMYVAPL 210
           SLD+E+C                                           +INK+Y+ P 
Sbjct: 493 SLDYEECAHKLMKMELKPGQESELCHMFLDCCAEQRTYEKFYGLLAQRFCMINKIYIEPF 552

Query: 211 EQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKI 270
           EQIF+++Y+T HRLD N+LRNV+KFFAH LFTD+IGW V+ CI LNEE+TTSS RIFIKI
Sbjct: 553 EQIFQDTYTTTHRLDTNRLRNVSKFFAHLLFTDSIGWDVMRCIRLNEEDTTSSSRIFIKI 612

Query: 271 LFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
           LFQEL+EYMGL KLN + KDP LA    G+FPRDNPKNTRFAINFF
Sbjct: 613 LFQELAEYMGLYKLNARFKDPTLAEPFSGLFPRDNPKNTRFAINFF 658

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	316
UNIPROTKB|B7WP74	745	CWC22 "Pre-mRNA-splicing facto	0.370	0.157	0.641	6.1e-69
UNIPROTKB|F1NI57	854	CWC22 "Pre-mRNA-splicing facto	0.370	0.137	0.649	1.5e-68
UNIPROTKB|F1MWG3	899	CWC22 "Uncharacterized protein	0.370	0.130	0.641	2.2e-68
UNIPROTKB|F1RYP5	904	CWC22 "Uncharacterized protein	0.370	0.129	0.641	2.3e-68
UNIPROTKB|J9P9J1	908	CWC22 "Uncharacterized protein	0.370	0.128	0.641	2.4e-68
UNIPROTKB|E2RIF6	914	CWC22 "Uncharacterized protein	0.370	0.128	0.641	2.5e-68
UNIPROTKB|B7WP27	908	CWC22 "Pre-mRNA-splicing facto	0.370	0.128	0.641	3.9e-68
UNIPROTKB|Q9HCG8	908	CWC22 "Pre-mRNA-splicing facto	0.370	0.128	0.641	3.9e-68
UNIPROTKB|Q5RA93	908	CWC22 "Pre-mRNA-splicing facto	0.370	0.128	0.641	1e-67
FB|FBgn0086707	1330	ncm "nucampholin" [Drosophila	0.424	0.100	0.629	1.7e-67

UNIPROTKB|B7WP74 CWC22 "Pre-mRNA-splicing factor CWC22 homolog" [Homo sapiens (taxid:9606)]

 Score = 411 (149.7 bits), Expect = 6.1e-69, Sum P(3) = 6.1e-69
 Identities = 75/117 (64%), Positives = 90/117 (76%)

Query:   200 CLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEE 259
             C++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD++ W VL CI L+EE 
Sbjct:   515 CMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEET 574

Query:   260 TTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
             TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  EG+ PRDNP+NTRFAINFF
Sbjct:   575 TTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFF 631

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

UNIPROTKB|F1NI57 CWC22 "Pre-mRNA-splicing factor CWC22 homolog" [Gallus gallus (taxid:9031)]

 Score = 410 (149.4 bits), Expect = 1.5e-68, Sum P(3) = 1.5e-68
 Identities = 76/117 (64%), Positives = 90/117 (76%)

Query:   200 CLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEE 259
             C++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD+I W VL CI L+EE 
Sbjct:   446 CMLKKEYMESFEAIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSIPWSVLECIILSEET 505

Query:   260 TTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
             TTSS RIF+KI FQELSEYMGL  LN ++KD  L P  EG+ PRDNP+NTRFAINFF
Sbjct:   506 TTSSSRIFVKIFFQELSEYMGLPNLNARLKDITLQPFFEGLLPRDNPRNTRFAINFF 562

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

UNIPROTKB|F1MWG3 CWC22 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 413 (150.4 bits), Expect = 2.2e-68, Sum P(3) = 2.2e-68
 Identities = 75/117 (64%), Positives = 90/117 (76%)

Query:   200 CLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEE 259
             C++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD++ W VL CI L+EE 
Sbjct:   513 CMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEET 572

Query:   260 TTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
             TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  EG+ PRDNP+NTRFAINFF
Sbjct:   573 TTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFF 629

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1RYP5 CWC22 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 413 (150.4 bits), Expect = 2.3e-68, Sum P(3) = 2.3e-68
 Identities = 75/117 (64%), Positives = 90/117 (76%)

Query:   200 CLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEE 259
             C++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD++ W VL CI L+EE 
Sbjct:   514 CMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEET 573

Query:   260 TTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
             TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  EG+ PRDNP+NTRFAINFF
Sbjct:   574 TTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFF 630

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|J9P9J1 CWC22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 413 (150.4 bits), Expect = 2.4e-68, Sum P(3) = 2.4e-68
 Identities = 75/117 (64%), Positives = 90/117 (76%)

Query:   200 CLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEE 259
             C++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD++ W VL CI L+EE 
Sbjct:   515 CMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEET 574

Query:   260 TTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
             TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  EG+ PRDNP+NTRFAINFF
Sbjct:   575 TTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFF 631

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2RIF6 CWC22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 413 (150.4 bits), Expect = 2.5e-68, Sum P(3) = 2.5e-68
 Identities = 75/117 (64%), Positives = 90/117 (76%)

Query:   200 CLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEE 259
             C++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD++ W VL CI L+EE 
Sbjct:   516 CMLKKEYMESFESIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEET 575

Query:   260 TTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
             TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  EG+ PRDNP+NTRFAINFF
Sbjct:   576 TTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFF 632

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|B7WP27 CWC22 "Pre-mRNA-splicing factor CWC22 homolog" [Homo sapiens (taxid:9606)]

 Score = 411 (149.7 bits), Expect = 3.9e-68, Sum P(3) = 3.9e-68
 Identities = 75/117 (64%), Positives = 90/117 (76%)

Query:   200 CLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEE 259
             C++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD++ W VL CI L+EE 
Sbjct:   515 CMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEET 574

Query:   260 TTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
             TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  EG+ PRDNP+NTRFAINFF
Sbjct:   575 TTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFF 631

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q9HCG8 CWC22 "Pre-mRNA-splicing factor CWC22 homolog" [Homo sapiens (taxid:9606)]

 Score = 411 (149.7 bits), Expect = 3.9e-68, Sum P(3) = 3.9e-68
 Identities = 75/117 (64%), Positives = 90/117 (76%)

Query:   200 CLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEE 259
             C++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD++ W VL CI L+EE 
Sbjct:   515 CMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEET 574

Query:   260 TTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
             TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  EG+ PRDNP+NTRFAINFF
Sbjct:   575 TTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFF 631

GO:0003677 "DNA binding" evidence=IEA

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=IC

GO:0003723 "RNA binding" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q5RA93 CWC22 "Pre-mRNA-splicing factor CWC22 homolog" [Pongo abelii (taxid:9601)]

 Score = 411 (149.7 bits), Expect = 1.0e-67, Sum P(3) = 1.0e-67
 Identities = 75/117 (64%), Positives = 90/117 (76%)

Query:   200 CLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEE 259
             C++ K Y+   E IF+E Y T+HRL+ NKLRNVAK FAH L+TD++ W VL CI L+EE 
Sbjct:   515 CMLKKEYMESFEGIFKEQYDTIHRLETNKLRNVAKMFAHLLYTDSLPWSVLECIKLSEET 574

Query:   260 TTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF 316
             TTSS RIF+KI FQEL EYMGL KLN ++KD  L P  EG+ PRDNP+NTRFAINFF
Sbjct:   575 TTSSSRIFVKIFFQELCEYMGLPKLNARLKDETLQPFFEGLLPRDNPRNTRFAINFF 631

GO:0003723 "RNA binding" evidence=ISS

GO:0005681 "spliceosomal complex" evidence=ISS

FB|FBgn0086707 ncm "nucampholin" [Drosophila melanogaster (taxid:7227)]

 Score = 452 (164.2 bits), Expect = 1.7e-67, Sum P(2) = 1.7e-67
 Identities = 85/135 (62%), Positives = 106/135 (78%)

Query:   182 ALRRTIYLTIHSSLDFEDCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLF 241
             A +RT Y   +  L    C INK+Y+ P E+IF+++Y T HRLD N+LRNV+KFFAH LF
Sbjct:   754 AEQRT-YEKFYGLLAQRFCNINKIYIPPFEEIFKDTYQTTHRLDTNRLRNVSKFFAHLLF 812

Query:   242 TDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVF 301
             TDAI W VL CI LNE++TTSS RIFIKILFQEL+EYMGL KLN K+KD +L  ++ G+F
Sbjct:   813 TDAISWDVLECIQLNEDDTTSSSRIFIKILFQELAEYMGLGKLNAKLKDDVLVESIAGLF 872

Query:   302 PRDNPKNTRFAINFF 316
             P+DNP+NTRF+INFF
Sbjct:   873 PKDNPRNTRFSINFF 887

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9VJ87	CWC22_DROME	No assigned EC number	0.5016	0.7246	0.1721	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	316
KOG2140|consensus	739		100.0
KOG2141|consensus	822		99.97
KOG2140|consensus	739		99.18
PF02854	209	MIF4G: MIF4G domain; InterPro: IPR003890 This entr	98.42
smart00544	113	MA3 Domain in DAP-5, eIF4G, MA-3 and other protein	98.38
smart00543	200	MIF4G Middle domain of eukaryotic initiation facto	98.38
PF02847	113	MA3: MA3 domain; InterPro: IPR003891 This entry re	98.28

>KOG2140|consensus

Probab=100.00  E-value=9.8e-107  Score=798.99  Aligned_cols=299  Identities=52%  Similarity=0.838  Sum_probs=289.2

Q ss_pred             chhhHhHHHHHHHHHhhcCccceeeeeeee----cccCCCCchHHHHHHHH---HHHHHhhhChhhhHHHHHhhchhhhh
Q psy7793          13 VFHKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNEEETTSSGRIFIKIL---FQELSEYMGLSKLNQKIKDPFRPVAR   85 (316)
Q Consensus        13 e~~ql~n~~kFlaHL~n~~~V~~~eililq----LlE~~Td~Svei~i~~L---Gq~L~e~~~~~~l~~~I~erlr~~iL   85 (316)
                      +--.|-|+++|+|||+||+ | +||+++||    |||.|||+||||||.||   |++|.+++|. |++ +||+|||. ||
T Consensus       251 Dk~~c~~~~kfiahLinq~-V-ahEIv~Leil~lLLe~PTddSvevaI~flkecGakL~~VSpr-~~n-~IfErlR~-IL  325 (739)
T KOG2140|consen  251 DKVSCLNASKFIAHLINQQ-V-AHEIVALEILTLLLERPTDDSVEVAIAFLKECGAKLAEVSPR-ALN-GIFERLRY-IL  325 (739)
T ss_pred             chHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHhChH-HHh-HHHHHHHH-HH
Confidence            3457899999999999999 9 99999999    89999999999999999   9999999999 988 99999999 99


Q ss_pred             hhcchhHHHHHHHHHHHHHHhcCCCCCCCccCcCCCCCCCCcceeEeeccCcCCccccCCceeeChhhhhhHHHHHHhhH
Q psy7793          86 WKGKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEEDKFTHLMTLDGVKDTQDILNVFQYDPEYLMNEEKYTTLRR  165 (316)
Q Consensus        86 ~e~~i~~r~q~~IE~Lf~ir~~~fk~~p~v~~eLdLve~~dq~tH~i~ld~~~~~e~~L~~F~~d~~~~~~E~~y~~~k~  165 (316)
                      |+|++++|+|||||+||++|+++||++|+++++||||+++||+||.++|+|+++|++.|++|++||+|++||++|++||+
T Consensus       326 he~Eld~rvqy~iEtlf~iRkdkfk~~p~v~~~LDlvee~dq~tH~l~l~de~dpe~~L~vFk~dp~f~ene~kydaikk  405 (739)
T KOG2140|consen  326 HEGELDRRVQYMIETLFQIRKDKFKSHPAVLEELDLVEEEDQITHSLSLEDEDDPEKELGVFKKDPNFEENEEKYDAIKK  405 (739)
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHhhccCCccccccCccchhhheeeeeecccccChhhhhcccccCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHcCCCCC---C--------hh--------------------HHHHHHhhhhHHHHhhccCChhhh--------------
Q psy7793         166 EILGDEDE---D--------DE--------------------ETNLVALRRTIYLTIHSSLDFEDC--------------  200 (316)
Q Consensus       166 eilg~~~~---d--------~~--------------------e~~lv~lRr~IYLtimSSld~eEa--------------  200 (316)
                      +|||++++   |        ++                    ++|+|+|||+||||||||+||+||              
T Consensus       406 eiLgn~dsen~d~~~~s~E~~~eee~e~~ee~~e~~qI~D~T~~Nlv~frr~IYLti~SSldfeEaaHKLLKmkip~~q~  485 (739)
T KOG2140|consen  406 EILGNEDSENEDDEDGSSEDDDEEEDESVEEDEEKLQIIDMTETNLVNFRRTIYLTIQSSLDFEEAAHKLLKMKIPESQE  485 (739)
T ss_pred             HHhcCCcccccccccccccccccccccccccccccceeeccccchhHHhhhhheeeeeccCcHHHHHHHHHhccCCchhh
Confidence            99997533   1        00                    679999999999999999999999              


Q ss_pred             -----------------------------hhhhhchHHHHHHHHHHHhhhhccchhhHhHHHHHHHHHHhhCCcccchhc
Q psy7793         201 -----------------------------LINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVLS  251 (316)
Q Consensus       201 -----------------------------~~~r~~~~~F~~~F~~~Y~~i~~~e~n~Lrn~akff~hLl~td~l~w~vl~  251 (316)
                                                   .++|.||.+|++||.++|.+|||+|||||||+||||||||+||+|||+||.
T Consensus       486 ~elc~mii~cc~QerTy~kFYglL~eRfc~l~r~~q~~fe~~f~q~YstIhr~EtnkLRnlakffahLlstd~lpw~vl~  565 (739)
T KOG2140|consen  486 KELCNMIIDCCAQERTYEKFYGLLGERFCMLHREWQEAFEKCFKQQYSTIHRYETNKLRNLAKFFAHLLSTDALPWDVLA  565 (739)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhcccccchHHHH
Confidence                                         889999999999999999999999999999999999999999999999999


Q ss_pred             eeEeCcCccCchhHHHHHHHHHHHHHHhChHHHHhhhcCCCchhhhcCCCCCCCCCCceeecccC
Q psy7793         252 CIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTRFAINFF  316 (316)
Q Consensus       252 ~I~ltE~dttss~RIfiK~lfqel~e~lGi~~l~~rl~d~~l~~~~~glFP~d~~~~~rfsINfF  316 (316)
                      ||+|||+|||||||||||||||||||+||+++|++||+||+|||+|+||||+|||+|+|||||||
T Consensus       566 ~ikLTEEdTtsssRIfiKilFqELve~lGl~~L~~RL~dptl~~~l~glFP~dnp~n~RfsINfF  630 (739)
T KOG2140|consen  566 CIKLTEEDTTSSSRIFIKILFQELVEALGLDKLNERLNDPTLQPKLEGLFPRDNPRNTRFSINFF  630 (739)
T ss_pred             HhhcccccCCccceehHHHHHHHHHHHhChHHHHHHhcCcchhhhhhccCcCCCcccceeeeehh
Confidence            99999999999999999999999999999999999999999999999999999999999999999

>KOG2141|consensus

Probab=99.97  E-value=1.1e-31  Score=273.69  Aligned_cols=284  Identities=18%  Similarity=0.225  Sum_probs=218.2

Q ss_pred             CCCcchhhHhHHHHHHHHHhhcCccceeeeeeee----cccCCCCchHHHHHHHH---HHHHHhhhChhhhHHHHHhhch
Q psy7793           9 LPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNEEETTSSGRIFIKIL---FQELSEYMGLSKLNQKIKDPFR   81 (316)
Q Consensus         9 ~~~~e~~ql~n~~kFlaHL~n~~~V~~~eililq----LlE~~Td~Svei~i~~L---Gq~L~e~~~~~~l~~~I~erlr   81 (316)
                      ..++.+|+|.|++.|+|||||++ | +++.++++    |.+++|.-++++++.++   |+.|+.++|. ++...|-+-..
T Consensus       416 ~~~~~~K~~~Nl~~~l~ylynF~-i-vs~~LiydiI~kl~~~l~e~~ve~ll~ii~~~G~~LRkDDp~-alk~~i~eiq~  492 (822)
T KOG2141|consen  416 EMDLKDKSLNNIVLFLSYLYNFG-I-VSCSLIYDIIRKLAENLNETNVEALLTIIANCGFSLRKDDPL-ALKDIITEIQS  492 (822)
T ss_pred             hcccccchhhhHHHHHHHHHHhh-c-ccHHHHHHHHHHHHhchhhhhHHHHHHHHHHccchhcCCChH-HHHHHHHHHHH
Confidence            45677999999999999999999 7 78888776    88999999999999988   9999999999 89866666555


Q ss_pred             hhhhhh--cchhHHHHHHHHHHHHHHhcCCCCCCCccCcCCCCC--------------CCCcceeEeeccCcCCccccCC
Q psy7793          82 PVARWK--GKLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVP--------------EEDKFTHLMTLDGVKDTQDILN  145 (316)
Q Consensus        82 ~~iL~e--~~i~~r~q~~IE~Lf~ir~~~fk~~p~v~~eLdLve--------------~~dq~tH~i~ld~~~~~e~~L~  145 (316)
                      . +-.-  .-++.|++||+|++.++++|+.++.|..+++.  |+              ...+..-.++|+|-+++|....
T Consensus       493 ~-a~~a~~s~~~pR~rFmleti~aLKnN~~kki~~~d~e~--ve~lrk~~k~l~~~~~s~~~~~l~vTledll~ae~kGr  569 (822)
T KOG2141|consen  493 K-AASAKISAISPRLRFMLETISALKNNKLKKIPYADPER--VENLRKLKKALGSSASSSVSLPLSVTLEDLLHAEQKGR  569 (822)
T ss_pred             H-hhcCCccccchHHHHHHHHHHHHhcCCCcCCCcCChHH--HHHHHHHHHHHHhccchhhhccccccHHHhhChHhcCc
Confidence            5 3222  23589999999999999999999999887764  32              2224444578888888888888


Q ss_pred             ceeeChhhhhhHHHH--------HHhhHhHcCCCCCCh-h----HHHHHHhhhhHHHHhhccCChhhh------------
Q psy7793         146 VFQYDPEYLMNEEKY--------TTLRREILGDEDEDD-E----ETNLVALRRTIYLTIHSSLDFEDC------------  200 (316)
Q Consensus       146 ~F~~d~~~~~~E~~y--------~~~k~eilg~~~~d~-~----e~~lv~lRr~IYLtimSSld~eEa------------  200 (316)
                      ||.++..|-.+++--        ....+.--|...++- +    +.+++++||.|||+||||.||.+|            
T Consensus       570 WWlVGsaw~g~~~~~~s~~~~~d~~~~k~~~gs~~~kmL~lArkqrMNTdiRr~IFcsImsaeDyiDAFEklLkL~LK~~  649 (822)
T KOG2141|consen  570 WWLVGSAWRGNEQFMGSINTASDSAKSKKAEGSFADKMLELARKQRMNTDIRRAIFCSIMSAEDYIDAFEKLLKLSLKGK  649 (822)
T ss_pred             eEEecchhcCCcccccccchHhHHhhhhcccCCccHHHHHHHHHhhcchHhhhhheeeeecchHHHHHHHHHHhccCCCc
Confidence            888888777755411        111111111111110 0    789999999999999999999999            


Q ss_pred             -------------------------------hhhhhchHHHHHHHHHHHhhhhccchhhHhHHHHHHHHHHhhCCcccch
Q psy7793         201 -------------------------------LINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHV  249 (316)
Q Consensus       201 -------------------------------~~~r~~~~~F~~~F~~~Y~~i~~~e~n~Lrn~akff~hLl~td~l~w~v  249 (316)
                                                     ..++.++.+||.|+|+.+..++.+.+-+++|+|+|+|||++++++|++|
T Consensus       650 Q~rEI~~VllhC~l~EK~yNpfYa~lA~KfCe~~~~~~~tfQF~~WD~f~ele~ls~~ri~nLa~l~a~Li~~~~lsLtV  729 (822)
T KOG2141|consen  650 QEREIARVLLHCCLNEKTYNPFYALLALKFCEFNKNLKKTFQFALWDRFKELEQLSLFRISNLAKLLASLISNAVLSLTV  729 (822)
T ss_pred             chHHHHHHHHHHHhhhcccchHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcchhhHhHHHHHHHHHHHhcccceee
Confidence                                           7899999999999999999999999999999999999999999999999


Q ss_pred             hceeEeCcCccCchhHHHHHHHHHHHHHH---hChHHHHhhh-cCCCchhhhcCC
Q psy7793         250 LSCIHLNEEETTSSGRIFIKILFQELSEY---MGLSKLNQKI-KDPLLAPAMEGV  300 (316)
Q Consensus       250 l~~I~ltE~dttss~RIfiK~lfqel~e~---lGi~~l~~rl-~d~~l~~~~~gl  300 (316)
                      |+.|.+.+.++  .+--|+|.+|-.|.-.   =-+-.+..|. +.|.++-..+|+
T Consensus       730 LK~Vdfm~l~~--~~~~fl~~~l~~l~l~~~~~~v~~~ftr~~kn~k~~~l~~gv  782 (822)
T KOG2141|consen  730 LKHVDFMELNA--RRTTFLKKLLFGLILEPEEKDVFQLFTRVAKNTKLELLSEGV  782 (822)
T ss_pred             eeeccHhhcCh--HHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            99999995544  4445666555554332   1233445555 455565555553

>KOG2140|consensus

Probab=99.18  E-value=5e-12  Score=127.20  Aligned_cols=96  Identities=44%  Similarity=0.677  Sum_probs=83.9

Q ss_pred             CCcchhhHhHHHHHHHHHhhcCccceeeeeeeecccCCCCchHHHHHHHHHHHHHhhhChhhhHHHHHhhchhhhhh---
Q psy7793          10 PGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPFRPVARW---   86 (316)
Q Consensus        10 ~~~e~~ql~n~~kFlaHL~n~~~V~~~eililqLlE~~Td~Svei~i~~LGq~L~e~~~~~~l~~~I~erlr~~iL~---   86 (316)
                      +..|+++|||+++|||||+.++++||+++.++.|+|+.|++|.||+|+||||+|++..|..    .+-+||.+.-||   
T Consensus       536 hr~EtnkLRnlakffahLlstd~lpw~vl~~ikLTEEdTtsssRIfiKilFqELve~lGl~----~L~~RL~dptl~~~l  611 (739)
T KOG2140|consen  536 HRYETNKLRNLAKFFAHLLSTDALPWDVLACIKLTEEDTTSSSRIFIKILFQELVEALGLD----KLNERLNDPTLQPKL  611 (739)
T ss_pred             HHHhHHHHHHHHHHHHHHhcccccchHHHHHhhcccccCCccceehHHHHHHHHHHHhChH----HHHHHhcCcchhhhh
Confidence            6799999999999999999999999999999999999999999999999999999998874    555666663333   


Q ss_pred             ----hcchhHHHHHHHHHHHHHHhcCC
Q psy7793          87 ----KGKLEKRVQYMIEVLAQVRKDNF  109 (316)
Q Consensus        87 ----e~~i~~r~q~~IE~Lf~ir~~~f  109 (316)
                          +.+..+.++|.|+.+..|..++.
T Consensus       612 ~glFP~dnp~n~RfsINfFTsIGLGgL  638 (739)
T KOG2140|consen  612 EGLFPRDNPRNTRFSINFFTSIGLGGL  638 (739)
T ss_pred             hccCcCCCcccceeeeehhhhhccccc
Confidence                34677889999999999988776

>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain

Probab=98.42  E-value=3.3e-07  Score=79.97  Aligned_cols=92  Identities=17%  Similarity=0.204  Sum_probs=76.8

Q ss_pred             cchhhHhHHHHHHHHHhhcCccceeeeeeee----cccCCCC--------chHHHHHHHH---HHHHH--hhhChhhhHH
Q psy7793          12 LVFHKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNEEETT--------SSGRIFIKIL---FQELS--EYMGLSKLNQ   74 (316)
Q Consensus        12 ~e~~ql~n~~kFlaHL~n~~~V~~~eililq----LlE~~Td--------~Svei~i~~L---Gq~L~--e~~~~~~l~~   74 (316)
                      ...++..+.++|+|+||+++ | +++-.+++    |+...++        .++++++.+|   |..|.  ...+. .++ 
T Consensus        98 ~~~~~~~~~~~fl~eL~~~~-v-v~~~~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G~~l~~~~~~~~-~l~-  173 (209)
T PF02854_consen   98 SSKQRRRGNIRFLAELFNFG-V-VSEKIIFDILRELLSDGTDECQPPPDEENIECLCTLLKTCGKKLENSEESPK-ALD-  173 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-S-SCHHHHHHHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHHHHHHHCHHHHH-HHH-
T ss_pred             HHHHHHhhhhhHHHhhHhhc-c-ccchhHHHHHHHHHhcccccccCCCcHhHHHHHHHHHHHHHHHHhcCCCchh-HHH-
Confidence            34567899999999999999 6 56555544    6666555        8999999999   99999  88777 677 


Q ss_pred             HHHhhchhhhhhh---cchhHHHHHHHHHHHHHHhcC
Q psy7793          75 KIKDPFRPVARWK---GKLEKRVQYMIEVLAQVRKDN  108 (316)
Q Consensus        75 ~I~erlr~~iL~e---~~i~~r~q~~IE~Lf~ir~~~  108 (316)
                      .++++++. ....   +.++.|+++|++.++++|+++
T Consensus       174 ~~~~~~~~-~~~~~~~~~~~~r~~~~l~~l~~lr~~~  209 (209)
T PF02854_consen  174 EIFERLQK-YANSKKDPNLSSRIRFMLEDLIELRNNK  209 (209)
T ss_dssp             HHHHHHHH-HHHHCHSSSSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHH-HHHhhcccCCCHHHHHHHHHHHHHhcCC
Confidence            99999999 6665   899999999999999999985

MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....

>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins

Probab=98.38  E-value=4.5e-07  Score=74.00  Aligned_cols=46  Identities=22%  Similarity=0.324  Sum_probs=43.2

Q ss_pred             hhhhhchHHHHHHHHHHHhhhhccch---hhHhHHHHHHHHHHhhCCcc
Q psy7793         201 LINKMYVAPLEQIFRESYSTVHRLDI---NKLRNVAKFFAHQLFTDAIG  246 (316)
Q Consensus       201 ~~~r~~~~~F~~~F~~~Y~~i~~~e~---n~Lrn~akff~hLl~td~l~  246 (316)
                      +.+..++..|+++||+.|+.+++++.   +...|+|+|+|++++.|.+|
T Consensus        65 ~~~~~~~~~~~~~f~~~~~~l~dl~~D~P~a~~~la~~~a~~v~~~~l~  113 (113)
T smart00544       65 QANVISTKQFEKGFWRLLEDIEDLELDIPNAWRNLAEFVARLISDGILP  113 (113)
T ss_pred             HcCCcCHHHHHHHHHHHHhhChhhhcccccHHHHHHHHHHHHHHcCCCC
Confidence            56788999999999999999999998   89999999999999999987

Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press

>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G)

Probab=98.38  E-value=5e-07  Score=79.10  Aligned_cols=92  Identities=18%  Similarity=0.248  Sum_probs=76.6

Q ss_pred             cchhhHhHHHHHHHHHhhcCccceeeeeeee----cccCCCC-------chHHHHHHHH---HHHHH-hhhChhhhHHHH
Q psy7793          12 LVFHKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNEEETT-------SSGRIFIKIL---FQELS-EYMGLSKLNQKI   76 (316)
Q Consensus        12 ~e~~ql~n~~kFlaHL~n~~~V~~~eililq----LlE~~Td-------~Svei~i~~L---Gq~L~-e~~~~~~l~~~I   76 (316)
                      ..-++.++.++|+|+|++++ | ++.-.+++    |++.++.       .++++++.+|   |+.|. ...|. .++ .+
T Consensus        91 ~~~~~~~~~i~fl~eL~~~~-~-i~~~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~~~~~~-~~~-~~  166 (200)
T smart00543       91 SDKQRRLGLVRFLGELYNFQ-V-LTSKIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLEREKSPK-LLD-EI  166 (200)
T ss_pred             HhhhhHHhHHHHHHHHHHcc-c-CcHHHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcCcccHH-HHH-HH
Confidence            45578899999999999999 6 55555554    6666665       7999999999   99999 77777 777 99


Q ss_pred             Hhhchhhhhhhc---chhHHHHHHHHHHHHHHhcC
Q psy7793          77 KDPFRPVARWKG---KLEKRVQYMIEVLAQVRKDN  108 (316)
Q Consensus        77 ~erlr~~iL~e~---~i~~r~q~~IE~Lf~ir~~~  108 (316)
                      +++++. ....+   ..+.|++||++.+.++|++.
T Consensus       167 l~~l~~-~~~~~~~~~~~~r~~~~l~~l~~l~~~~  200 (200)
T smart00543      167 LERLQD-YLLKKDKTELSSRLRFMLELLIELRKNK  200 (200)
T ss_pred             HHHHHH-HHhcccccCCChHHHHHHHHHHHHhhCc
Confidence            999999 66665   79999999999999999863

Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)

>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]

Probab=98.28  E-value=1.1e-06  Score=71.53  Aligned_cols=46  Identities=13%  Similarity=0.235  Sum_probs=41.7

Q ss_pred             hhhhhchHHHHHHHHHHHhhhhccchh---hHhHHHHHHHHHHhhCCcc
Q psy7793         201 LINKMYVAPLEQIFRESYSTVHRLDIN---KLRNVAKFFAHQLFTDAIG  246 (316)
Q Consensus       201 ~~~r~~~~~F~~~F~~~Y~~i~~~e~n---~Lrn~akff~hLl~td~l~  246 (316)
                      ..+...+..|+++|++.++.+++++..   ..+|+|+|+||+++.|+||
T Consensus        65 ~~~~~~~~~~~~gf~~~l~~l~Dl~~D~P~~~~~la~~~~~~i~~~~lp  113 (113)
T PF02847_consen   65 KRKLISKEQFQEGFEDLLESLEDLELDIPKAPEYLAKFLARLIADGILP  113 (113)
T ss_dssp             HTTSS-HHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTSS-
T ss_pred             hcCCCCHHHHHHHHHHHHhHhhhccccchHHHHHHHHHHHHHHHcCCcC
Confidence            567888999999999999999999988   9999999999999999997

It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	316
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1h2v_C	771	80 kDa nuclear CAP binding protein; CAP-binding-co	5e-09
1h2v_C	771	80 kDa nuclear CAP binding protein; CAP-binding-co	6e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.3 bits (140), Expect = 1e-09
 Identities = 61/349 (17%), Positives = 105/349 (30%), Gaps = 120/349 (34%)

Query: 3   MMESLYLPGLVFHKLRNV-----AKFFAHQ---LFT-------DAIG---WHVLSCIH-- 42
           +    Y   L+   L NV        F      L T       D +       +S  H  
Sbjct: 238 LKSKPYENCLLV--LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295

Query: 43  --LNEEETTSSGRIFIKIL---FQELSEYM------GLSKLNQKIKDPFRPVARWKG--- 88
             L  +E  S   + +K L    Q+L   +       LS + + I+D    +A W     
Sbjct: 296 MTLTPDEVKS---LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG---LATWDNWKH 349

Query: 89  ----KLEKRVQYMIEVL-AQVRKDNFKD---FPDVIEDLDLVPEEDKFTHLMTLDGVKDT 140
               KL   ++  + VL     +  F     FP        +P          L      
Sbjct: 350 VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP---PSAH-IPTI-------LLS----- 393

Query: 141 QDIL--NVFQYDPEYLMNEEKYTTLRREILGDEDEDDEETNLVALRRTIYLTIHSSLDFE 198
             ++  +V + D   ++N+     L +  L ++   +             ++I S +  E
Sbjct: 394 --LIWFDVIKSDVMVVVNK-----LHKYSLVEKQPKES-----------TISIPS-IYLE 434

Query: 199 DCLINKMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDA--------IGWHVL 250
                        ++  E+   +HR  ++       F +  L            IG H L
Sbjct: 435 ------------LKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-L 481

Query: 251 SCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEG 299
             I   E  T          LF+ +  ++    L QKI+    A    G
Sbjct: 482 KNIEHPERMT----------LFRMV--FLDFRFLEQKIRHDSTAWNASG 518

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Length = 771

 Score = 56.4 bits (135), Expect = 5e-09
 Identities = 17/122 (13%), Positives = 42/122 (34%), Gaps = 6/122 (4%)

Query: 192 HSSLDFEDCLINKMYVAP-LEQIFRESYSTVHRLDINKLRNVAKFFAHQLFTDAIGWHVL 250
           +++L  E C +    +   L Q     Y  +  ++   +     +F+H L      W   
Sbjct: 353 YTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFSHHLSNFQFRWSWE 412

Query: 251 SCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRDNPKNTR 310
                  ++  S    F++ + ++          +Q+I D +  P    + P +     +
Sbjct: 413 DWSDCLSQDPESPKPKFVREVLEKCMRLSY----HQRILDIVP-PTFSALCPSNPTCIYK 467

Query: 311 FA 312
           + 
Sbjct: 468 YG 469

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A* Length = 771

 Score = 40.6 bits (94), Expect = 6e-04
 Identities = 8/74 (10%), Positives = 22/74 (29%)

Query: 9   LPGLVFHKLRNVAKFFAHQLFTDAIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMG 68
           L  +    +     +F+H L      W          ++  S    F++ + ++      
Sbjct: 383 LDTMNTTCVDRFINWFSHHLSNFQFRWSWEDWSDCLSQDPESPKPKFVREVLEKCMRLSY 442

Query: 69  LSKLNQKIKDPFRP 82
             ++   +   F  
Sbjct: 443 HQRILDIVPPTFSA 456

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	316
1h2v_C	771	80 kDa nuclear CAP binding protein; CAP-binding-co	99.92
1hu3_A	260	EIF4GII; heat repeat, translation; 2.37A {Homo sap	99.34
2vso_E	284	Eukaryotic initiation factor 4F subunit P150; acet	99.21
3rk6_A	234	Polyadenylate-binding protein-interacting protein;	98.99
2i2o_A	224	EIF4G-like protein; protein structure initiative,	98.46
1uw4_B	248	UPF2, regulator of nonsense transcripts 2; nonsens	83.8
1ug3_A	339	EIF4GI, eukaryotic protein synthesis initiation fa	82.77

>1h2v_C 80 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14 a.118.1.14 PDB: 1n52_A* 1n54_A 3fex_A 3fey_A 1h6k_A 1h2t_C* 1h2u_A*

Probab=99.92  E-value=2.3e-25  Score=234.12  Aligned_cols=266  Identities=14%  Similarity=0.215  Sum_probs=209.3

Q ss_pred             cchhhHhHHHHHHHHHhhcCccceeeeeeee----cccCCCCc---------hHHHHHHHH---HHHHHhhhChhhhHHH
Q psy7793          12 LVFHKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNEEETTS---------SGRIFIKIL---FQELSEYMGLSKLNQK   75 (316)
Q Consensus        12 ~e~~ql~n~~kFlaHL~n~~~V~~~eililq----LlE~~Td~---------Svei~i~~L---Gq~L~e~~~~~~l~~~   75 (316)
                      .+-..++.+.+|+|||+|++ | +++..+++    |++.++++         .+.+++..|   |+.|.+..+. +++ +
T Consensus       100 ~~~~~~k~~lrFLa~L~n~~-V-v~~~~il~lL~~Ll~~~~e~~~~q~r~D~~v~~vL~~Lp~~G~~L~e~~~~-~l~-~  175 (771)
T 1h2v_C          100 NNYNEAVYLVRFLSDLVNCH-V-IAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDA-EMD-R  175 (771)
T ss_dssp             TCHHHHHHHHHHHHHHHHTT-S-BCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHH-HHH-H
T ss_pred             cChHHHHHHHHHHHHhccCC-e-ecHHHHHHHHHHHHHhhhhcCCcccchhHHHHHHHHHHHHHHHHHHhcCHH-HHH-H
Confidence            35578999999999999999 8 89888877    77777654         444566555   9999999998 888 9


Q ss_pred             HHhhchhhhh-hhcc-----h-----------hHHHHHHHHHHHHHHhcCCCCCCCccCcCCCCC--CCCcceeEee-cc
Q psy7793          76 IKDPFRPVAR-WKGK-----L-----------EKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVP--EEDKFTHLMT-LD  135 (316)
Q Consensus        76 I~erlr~~iL-~e~~-----i-----------~~r~q~~IE~Lf~ir~~~fk~~p~v~~eLdLve--~~dq~tH~i~-ld  135 (316)
                      |+++++. ++ +++.     +           +++++++++.|.++|+++++. |.+++.++.++  .+|+.+|.+. ++
T Consensus       176 lle~~~~-yl~~r~~~~~~ll~~~~~~~~~~~~~~l~~L~~ql~~lr~~~w~~-~~iprp~~~f~~~l~d~~~H~lp~~~  253 (771)
T 1h2v_C          176 IFANTES-YLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQE-RHILRPYLAFDSILCEALQHNLPPFT  253 (771)
T ss_dssp             HHHHHHH-HHHTCCCTTHHHHCSBCCCSSCCCCBHHHHHHHHHHHHHHTTTCC-SCCCCGGGGGTTTCCGGGCBCCCCCC
T ss_pred             HHHHHHH-HHHhcCccchhhhhccccCCCCchhhHHHHHHHHHHHHHHCCCCC-cCCCchhhhccccccccccCCCCCCC
Confidence            9999999 65 4443     2           579999999999999999984 77777766665  5678899876 44


Q ss_pred             CcCCccccCCceeeChhhhhhHHHHHHhhHhHcCCCCCCh-------hHHHHHHhhhhHHHHhhccC--Chhhh------
Q psy7793         136 GVKDTQDILNVFQYDPEYLMNEEKYTTLRREILGDEDEDD-------EETNLVALRRTIYLTIHSSL--DFEDC------  200 (316)
Q Consensus       136 ~~~~~e~~L~~F~~d~~~~~~E~~y~~~k~eilg~~~~d~-------~e~~lv~lRr~IYLtimSSl--d~eEa------  200 (316)
                      .+.+.+        ++.|.     |-.++.+|.|+++..+       ...+ ..+.|++|++||+|+  +..||      
T Consensus       254 ~p~~~~--------~~~yp-----~p~~~f~if~~~d~~e~~~~p~~~~id-r~l~re~ildIi~~~~~nrkecA~~Ll~  319 (771)
T 1h2v_C          254 PPPHTE--------DSVYP-----MPRVIFRMFDYTDDPEGPVMPGSHSVE-RFVIEENLHCIIKSHWKERKTCAAQLVS  319 (771)
T ss_dssp             CCCCCT--------TCCCC-----CCCBCCCCCCGGGCTTSSCCCCTTSHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred             CCCCcc--------cccCC-----ccceeeeccCCccccccccCCCcchHH-HHHHHHHHHHHHHHccCCHHHHHHHHhc
Confidence            333222        12222     3334455666433221       1233 778899999999999  66998      


Q ss_pred             ------------------------------------------hhh-hhchHHHHHHHHHHHhhhhccchhhHhHHHHHHH
Q psy7793         201 ------------------------------------------LIN-KMYVAPLEQIFRESYSTVHRLDINKLRNVAKFFA  237 (316)
Q Consensus       201 ------------------------------------------~~~-r~~~~~F~~~F~~~Y~~i~~~e~n~Lrn~akff~  237 (316)
                                                                +.+ +.|...|.+||+..|+++|+++++.+++++++|+
T Consensus       320 l~~~~~~~~e~~iVE~i~~el~~LP~p~~~~iyY~sll~eLCkl~P~~~~~v~~~ai~~lY~~i~~md~e~~~Rf~dwFS  399 (771)
T 1h2v_C          320 YPGKNKIPLNYHIVEVIFAELFQLPAPPHIDVMYTTLLIELCKLQPGSLPQVLAQATEMLYMRLDTMNTTCVDRFINWFS  399 (771)
T ss_dssp             CCCSSCCCHHHHHHHHHHHHHTCSSCCSSCHHHHHHHHHHHHHHSTTTHHHHHHHHHHHHHHTGGGBCHHHHHHHHHHHH
T ss_pred             CCCCCcccHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHhhcccCHHHHHHHHHHHH
Confidence                                                      555 7899999999999999999999999999999999


Q ss_pred             HHHhhC--CcccchhceeEeCcCccCchhHHHHHHHHHHHHHHhChHHHHhhhcCCCchhhhcCCCCCC
Q psy7793         238 HQLFTD--AIGWHVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLSKLNQKIKDPLLAPAMEGVFPRD  304 (316)
Q Consensus       238 hLl~td--~l~w~vl~~I~ltE~dttss~RIfiK~lfqel~e~lGi~~l~~rl~d~~l~~~~~glFP~d  304 (316)
                      |.|+++  ..||+.|..+  ++.++++++|+|||.+||+++. |.-   .+|+++ ++.+.+.+++|.+
T Consensus       400 hhLSNF~f~W~W~eW~~~--~e~~~~~p~r~Fik~ll~k~~R-LSy---~~rIk~-~lP~~~~~llp~~  461 (771)
T 1h2v_C          400 HHLSNFQFRWSWEDWSDC--LSQDPESPKPKFVREVLEKCMR-LSY---HQRILD-IVPPTFSALCPSN  461 (771)
T ss_dssp             HHHTTTTTCCCGGGGGGG--TTSCTTSHHHHHHHHHHHHHHH-TSC---HHHHHT-TSCGGGGGGSCCC
T ss_pred             HHHhcCCcCccHHHhHHh--hcCCccCcHHHHHHHHHHHHHh-hhh---HHHHHH-hCcHHHHhhCCCC
Confidence            999999  6899988766  7889999999999999999985 332   468876 8889999999964

>1hu3_A EIF4GII; heat repeat, translation; 2.37A {Homo sapiens} SCOP: a.118.1.14

Probab=99.34  E-value=5.9e-13  Score=123.25  Aligned_cols=95  Identities=12%  Similarity=0.122  Sum_probs=82.6

Q ss_pred             hhHhHHHHHHHHHhhcCccceeeeeeee----cccCCCCchHHHHHHHH---HHHHHhhhChhhhHHHHHhhchhhhhhh
Q psy7793          15 HKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNEEETTSSGRIFIKIL---FQELSEYMGLSKLNQKIKDPFRPVARWK   87 (316)
Q Consensus        15 ~ql~n~~kFlaHL~n~~~V~~~eililq----LlE~~Td~Svei~i~~L---Gq~L~e~~~~~~l~~~I~erlr~~iL~e   87 (316)
                      ++..+.++||||||+++ | +++.++.+    |+++|+++++|+++.+|   |+.|....+...++ .+|++++. ++++
T Consensus       144 ~r~lg~i~FIgeLy~~~-~-l~~~i~~~~l~~Ll~~~~e~~iE~l~~lL~tvG~~L~~~~~~~~l~-~~f~~l~~-~~~~  219 (260)
T 1hu3_A          144 RRSIGNIKFIGELFKLK-M-LTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAKPRMD-QYFNQMEK-IVKE  219 (260)
T ss_dssp             HHHHHHHHHHHHHHTTT-C-SCHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCCTTTHHHHH-HHHHHHHH-HHHS
T ss_pred             HHHHhHHHHHHHHHhcC-C-CCHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHhCcccHHHHH-HHHHHHHH-HHhC
Confidence            45779999999999999 7 78777655    89999999999999999   99998854432666 99999999 9999


Q ss_pred             cchhHHHHHHHHHHHHHHhcCCCCCC
Q psy7793          88 GKLEKRVQYMIEVLAQVRKDNFKDFP  113 (316)
Q Consensus        88 ~~i~~r~q~~IE~Lf~ir~~~fk~~p  113 (316)
                      ++++.|+||||+.++++|++|++..+
T Consensus       220 ~~ls~Rirfmi~~l~dLR~~~W~~~~  245 (260)
T 1hu3_A          220 RKTSSRIRFMLQDVIDLRLCNWVSRR  245 (260)
T ss_dssp             CSSCHHHHHHHHHHHHHHHTTTCC--
T ss_pred             CCCCHHHHHHHHHHHHHHHcCCCCCc
Confidence            99999999999999999999997544

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*

Probab=99.21  E-value=6.7e-12  Score=117.54  Aligned_cols=92  Identities=10%  Similarity=0.144  Sum_probs=79.6

Q ss_pred             hhHhHHHHHHHHHhhcCccceeeeeeee----ccc----CCCCchHHHHHHHH---HHHHHhhhC---------hhhhHH
Q psy7793          15 HKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNE----EETTSSGRIFIKIL---FQELSEYMG---------LSKLNQ   74 (316)
Q Consensus        15 ~ql~n~~kFlaHL~n~~~V~~~eililq----LlE----~~Td~Svei~i~~L---Gq~L~e~~~---------~~~l~~   74 (316)
                      ++..+.++||||||+++ | +++.++.+    |++    .|+++++|+++++|   |+.|....+         ...++ 
T Consensus       171 ~r~lg~i~FIgeLyk~~-~-l~~~i~~~ci~~LL~~~~~~p~e~~iE~l~~lL~tvG~~Ld~~~~~~~~~~~~~~~~md-  247 (284)
T 2vso_E          171 RRGLGLVRFIGFLYRLN-L-LTGKMMFECFRRLMKDLTDSPSEETLESVVELLNTVGEQFETDSFRTGQATLEGSQLLD-  247 (284)
T ss_dssp             HHHHHHHHHHHHHHHTT-S-SCHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTSCC--------CHHHHHH-
T ss_pred             HHHhhHHHHHHHHHhcc-C-CcHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcccccccccchhhHHHHH-
Confidence            46778899999999999 7 78777654    776    89999999999999   999988764         22556 


Q ss_pred             HHHhhchhhhhhhcchhHHHHHHHHHHHHHHhc-CCC
Q psy7793          75 KIKDPFRPVARWKGKLEKRVQYMIEVLAQVRKD-NFK  110 (316)
Q Consensus        75 ~I~erlr~~iL~e~~i~~r~q~~IE~Lf~ir~~-~fk  110 (316)
                      .+|++++. +.+.++++.|+||||+.++++|++ |++
T Consensus       248 ~~f~~l~~-l~~~~~ls~RirFml~dlidLR~n~~W~  283 (284)
T 2vso_E          248 SLFGILDN-IIQTAKISSRIKFKLIDIKELRHDKNWN  283 (284)
T ss_dssp             HHHHHHHH-HHTTSCCCHHHHHHHHHHHHHHHTSTTC
T ss_pred             HHHHHHHH-HHhCCCCCHHHHHHHHHHHHHhcccCCC
Confidence            99999999 999999999999999999999997 884

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}

Probab=98.99  E-value=2.9e-10  Score=104.13  Aligned_cols=86  Identities=12%  Similarity=0.133  Sum_probs=73.1

Q ss_pred             hhHhHHHHHHHHHhhc--------Cccceeeeee----ee----cccCCCCchHHHHHHHH---HHHHHh----hhChhh
Q psy7793          15 HKLRNVAKFFAHQLFT--------DAIGWHVLSC----IH----LNEEETTSSGRIFIKIL---FQELSE----YMGLSK   71 (316)
Q Consensus        15 ~ql~n~~kFlaHL~n~--------~~V~~~eili----lq----LlE~~Td~Svei~i~~L---Gq~L~e----~~~~~~   71 (316)
                      ++....++||||||++        + + +++.++    .+    ++++|+++++|+++++|   |+.|.+    ..+. .
T Consensus       126 ~r~lg~i~FIgELf~~l~~~~~~~~-~-l~e~I~~~ci~~Ll~~l~~~p~ee~vE~l~~lL~tvG~~Ld~~~~~~~~~-~  202 (234)
T 3rk6_A          126 KRFHAFVLFLGELYLNLEIKGTNGQ-V-TRADILQVGLRELLNALFSNPMDDNLICAVKLLKLTGSVLEDAWKEKGKM-D  202 (234)
T ss_dssp             HHHHHHHHHHHHHHHHCCEECTTSS-E-ECCHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCC-H
T ss_pred             HHHHHHHHHHHHHHhhhcccccccc-h-hHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhhcchhhhHH-H
Confidence            4677889999999998        6 6 565552    22    46789999999999999   999997    4455 6


Q ss_pred             hHHHHHhhchhhhhhhcchhHHHHHHHHHHHHHH
Q psy7793          72 LNQKIKDPFRPVARWKGKLEKRVQYMIEVLAQVR  105 (316)
Q Consensus        72 l~~~I~erlr~~iL~e~~i~~r~q~~IE~Lf~ir  105 (316)
                      ++ .+|+|+++ +++++++++|+||||+.++++|
T Consensus       203 md-~~f~rl~~-i~~~~~ls~Rirfml~dlieLR  234 (234)
T 3rk6_A          203 ME-EIIQRIEN-VVLDANCSRDVKQMLLKLVELR  234 (234)
T ss_dssp             HH-HHHHHHHH-HHHHCCCCHHHHHHHHHHHHHC
T ss_pred             HH-HHHHHHHH-HHhCCCCCHHHHHHHHHHHHhC
Confidence            66 99999999 9999999999999999999987

>2i2o_A EIF4G-like protein; protein structure initiative, PSI, cente eukaryotic structural genomics, CESG, structural genomics, function; HET: MSE; 1.92A {Danio rerio}

Probab=98.46  E-value=1.4e-07  Score=85.80  Aligned_cols=93  Identities=11%  Similarity=0.143  Sum_probs=75.1

Q ss_pred             hHhHHHHHHHHHhhc----Cccceeee-----eeee-cccC---CCCchHHHHHHHH---HHHHHhhhChhhhHHHHHhh
Q psy7793          16 KLRNVAKFFAHQLFT----DAIGWHVL-----SCIH-LNEE---ETTSSGRIFIKIL---FQELSEYMGLSKLNQKIKDP   79 (316)
Q Consensus        16 ql~n~~kFlaHL~n~----~~V~~~ei-----lilq-LlE~---~Td~Svei~i~~L---Gq~L~e~~~~~~l~~~I~er   79 (316)
                      +....++|+|+||.+    + ++...+     .+++ |++.   |+++++|+++++|   |..|....+. .++ .+|.+
T Consensus       102 r~lG~i~FIgELf~~l~~~~-~~~~~l~~i~~~cl~~Ll~~~~~p~Ee~lEcl~~LL~tvG~~Ld~~~~~-~md-~~f~~  178 (224)
T 2i2o_A          102 EWVCLVSFICNIFDYLKVNN-MPMVALVHPVYDCLFRLAQSDALKNEEEVDCLVLQLHRIGDQLEKMNVQ-LMD-ELFNL  178 (224)
T ss_dssp             HHHHHHHHHHHHHHHSCBTT-BCCGGGHHHHHHHHHHHTSHHHHTSHHHHHHHHHHHHHHHHHHHHHCHH-HHH-HHHHH
T ss_pred             HHhHHHHHHHHHHhHhcccC-cchHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHHHHHHHcccHH-HHH-HHHHH
Confidence            455788999999999    6 423332     1233 7775   7889999999999   9999988775 666 99999


Q ss_pred             chhhhhhhcchhHHHHHHHHHHHHHHhcCCCC
Q psy7793          80 FRPVARWKGKLEKRVQYMIEVLAQVRKDNFKD  111 (316)
Q Consensus        80 lr~~iL~e~~i~~r~q~~IE~Lf~ir~~~fk~  111 (316)
                      +++++++.+.++.|++|||..++++|++|++.
T Consensus       179 l~~~l~~~~~ls~RiRfml~dlieLR~~~W~~  210 (224)
T 2i2o_A          179 LRDGFLLQEDLSSMGRLLLLEILEFRAGGWKL  210 (224)
T ss_dssp             HHHHHHHCCCCCHHHHHHHHHHHHHHHTTSCC
T ss_pred             HHHHHhcCcCCCHHHHHHHHHHHHHHHCCCCC
Confidence            99944666799999999999999999999974

>1uw4_B UPF2, regulator of nonsense transcripts 2; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: a.118.1.14

Probab=83.80  E-value=0.76  Score=42.17  Aligned_cols=98  Identities=16%  Similarity=0.131  Sum_probs=61.2

Q ss_pred             CCcchhhHh-HHHHHHHHHhhcCccceeeeeeee----ccc--CC-----CCch-------HHHHHHHH---HHHHHhhh
Q psy7793          10 PGLVFHKLR-NVAKFFAHQLFTDAIGWHVLSCIH----LNE--EE-----TTSS-------GRIFIKIL---FQELSEYM   67 (316)
Q Consensus        10 ~~~e~~ql~-n~~kFlaHL~n~~~V~~~eililq----LlE--~~-----Td~S-------vei~i~~L---Gq~L~e~~   67 (316)
                      ++...+|-| +.++|+|+|||++ + ++.-+++.    |+.  .|     ...+       +++++.+|   |+.....+
T Consensus        93 n~~~~nQrRia~vkyLgELYny~-l-v~s~vIf~~Ly~li~fg~~~~~~~~~~D~p~d~FRIrLvCtLL~tcg~~f~~~~  170 (248)
T 1uw4_B           93 NQPKFNQRRISSAKFLGELYNYR-M-VESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGS  170 (248)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHTT-S-SCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHcCCCCCCCCCCCCCCCccchhHHHHHHHHHHHHHHhcchh
Confidence            444455544 6689999999999 6 66556554    221  11     2223       89999888   77664443


Q ss_pred             ChhhhHHHHHhhchhhhh---------hhcchhHHHHHHHHHHHHHHhcCCC
Q psy7793          68 GLSKLNQKIKDPFRPVAR---------WKGKLEKRVQYMIEVLAQVRKDNFK  110 (316)
Q Consensus        68 ~~~~l~~~I~erlr~~iL---------~e~~i~~r~q~~IE~Lf~ir~~~fk  110 (316)
                      ..+.++ ..+-.|+.-++         .+..++.+++||++.+++.=|.+++
T Consensus       171 ~~kkLd-~fL~ffQ~Y~~~K~~~~~~~k~~plP~~vef~l~D~~~~lrp~~~  221 (248)
T 1uw4_B          171 SKRKLD-CFLVYFQRYVWWKKSLEVWTKDHPFPIDIDYMISDTLELLRPKIK  221 (248)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHTSTTCCSSSCCCHHHHHHHHHHHHHHCTTCC
T ss_pred             hHHHHH-HHHHHHHHHHhhcccccccccCCCCCHHHHHHHHHHHHHhcccCc
Confidence            333444 44555554122         1335899999999999988554554

>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14

Probab=82.77  E-value=1.3  Score=41.67  Aligned_cols=94  Identities=13%  Similarity=0.126  Sum_probs=74.4

Q ss_pred             hHHHHHHHHHHHhhhhccc---hhhHhHHHHHHHHHHhhCCccc-chhceeEeCcCccCchhHHHHHHHHHHHHHHhChH
Q psy7793         207 VAPLEQIFRESYSTVHRLD---INKLRNVAKFFAHQLFTDAIGW-HVLSCIHLNEEETTSSGRIFIKILFQELSEYMGLS  282 (316)
Q Consensus       207 ~~~F~~~F~~~Y~~i~~~e---~n~Lrn~akff~hLl~td~l~w-~vl~~I~ltE~dttss~RIfiK~lfqel~e~lGi~  282 (316)
                      ...|.+.|..-++.+.++.   |+.=..+|+|.|.++..+.+|. +++..+- ......-.+.-|+.-+|+.++.+.|.+
T Consensus        80 ~~~~~~Gf~~~~~~l~Dl~lDiP~a~~~La~~v~~~i~~g~l~~~~l~~~~~-~~l~~~g~~~~fl~~vl~~l~~~~g~~  158 (339)
T 1ug3_A           80 TAQYYQGLYEILELAEDMEIDIPHVWLYLAELVTPILQEGGVPMGELFREIT-KPLRPLGKAASLLLEILGLLCKSMGPK  158 (339)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCTTHHHHHHHHHGGGGSTTSCCHHHHHHHHT-TTHHHHTCHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHhhChHhhcCccchHHHHHHHHHHHHHCCCCCHHHHHHHHH-HhhhccchHHHHHHHHHHHHHHHcCHH
Confidence            5678888999999999887   5777899999999999999998 5665332 111122346689999999999999999


Q ss_pred             HHHhhhcCCCchhhhcCCCCC
Q psy7793         283 KLNQKIKDPLLAPAMEGVFPR  303 (316)
Q Consensus       283 ~l~~rl~d~~l~~~~~glFP~  303 (316)
                      .+..-+++..+.  +..+||.
T Consensus       159 ~l~~~~~~s~l~--l~~f~P~  177 (339)
T 1ug3_A          159 KVGTLWREAGLS--WKEFLPE  177 (339)
T ss_dssp             HHHHHHHHTTCC--GGGTSCT
T ss_pred             HHHHHHHHcCCC--HHHhCCC
Confidence            999998776676  6788885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	316
d1hu3a_	243	Eukaryotic initiation factor eIF4G {Human (Homo sa	98.84
d1uw4b_	248	Regulator of nonsense transcripts 2, UPF2 {Human (	98.23
d1h2vc1	262	CBP80, 80KDa nuclear cap-binding protein {Human (H	97.32

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=1.2e-09  Score=96.25  Aligned_cols=93  Identities=12%  Similarity=0.082  Sum_probs=79.0

Q ss_pred             hhhHhHHHHHHHHHhhcCccceeeeeeee----cccCCCCchHHHHHHHH---HHHHHhhhChhhhHHHHHhhchhhhhh
Q psy7793          14 FHKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNEEETTSSGRIFIKIL---FQELSEYMGLSKLNQKIKDPFRPVARW   86 (316)
Q Consensus        14 ~~ql~n~~kFlaHL~n~~~V~~~eililq----LlE~~Td~Svei~i~~L---Gq~L~e~~~~~~l~~~I~erlr~~iL~   86 (316)
                      -++..+.++|+||||+++ | ++.-+++.    |+..|++..|+.++.+|   |..|....+. +..+.++++++. +..
T Consensus       143 k~~~~g~i~figeLy~~~-~-v~~~~i~~~l~~Ll~~~~e~~ie~l~~lL~~~G~~L~~~~~~-~~~~~~~~~l~~-~~~  218 (243)
T d1hu3a_         143 RRRSIGNIKFIGELFKLK-M-LTEAIMHDCVVKLLKNHDEESLECLCRLLTTIGKDLDFEKAK-PRMDQYFNQMEK-IVK  218 (243)
T ss_dssp             HHHHHHHHHHHHHHHTTT-C-SCHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHCCTTTH-HHHHHHHHHHHH-HHH
T ss_pred             HHHhcchHHHHHHHHccc-c-chHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhccccH-HHHHHHHHHHHH-HHh
Confidence            445668899999999999 5 55544443    89999999999999999   9999776665 444489999999 888


Q ss_pred             hcchhHHHHHHHHHHHHHHhcCCC
Q psy7793          87 KGKLEKRVQYMIEVLAQVRKDNFK  110 (316)
Q Consensus        87 e~~i~~r~q~~IE~Lf~ir~~~fk  110 (316)
                      .+.++.|++|||+.++++|++|.+
T Consensus       219 ~~~~s~Rirfml~~l~elR~~~W~  242 (243)
T d1hu3a_         219 ERKTSSRIRFMLQDVIDLRLCNWV  242 (243)
T ss_dssp             SCSSCHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCCCHHHHHHHHHHHHHHHcCCC
Confidence            899999999999999999999885

>d1uw4b_ a.118.1.14 (B:) Regulator of nonsense transcripts 2, UPF2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Regulator of nonsense transcripts 2, UPF2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=1.9e-07  Score=83.39  Aligned_cols=98  Identities=13%  Similarity=0.069  Sum_probs=69.3

Q ss_pred             hhhHhHHHHHHHHHhhcCccceeeeeeee----cc------------cCCCCch--HHHHHHHH---HHHHHhhhChhhh
Q psy7793          14 FHKLRNVAKFFAHQLFTDAIGWHVLSCIH----LN------------EEETTSS--GRIFIKIL---FQELSEYMGLSKL   72 (316)
Q Consensus        14 ~~ql~n~~kFlaHL~n~~~V~~~eililq----Ll------------E~~Td~S--vei~i~~L---Gq~L~e~~~~~~l   72 (316)
                      -++..+.++|+|+||+++ | ++.-++++    |+            ++|+++.  +|+++.+|   |..+....+.+.+
T Consensus        98 ~~r~~~~v~figeLy~~~-~-v~~~~i~~~l~~Ll~~~~~~~~~~~~~d~~~d~~rIe~l~~lL~t~G~~l~~~~~~~~l  175 (248)
T d1uw4b_          98 NQRRISSAKFLGELYNYR-M-VESAVIFRTLYSFTSFGVNPDGSPSSLDPPEHLFRIRLVCTILDTCGQYFDRGSSKRKL  175 (248)
T ss_dssp             HHHHHHHHHHHHHHHHTT-S-SCHHHHHHHHHHHHHTTCCTTSCCCSSSCTTCCHHHHHHHHHHHHHGGGCSSHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHc-c-CcHHHHHHHHHHHHhcCCCcccccccCCCCcchhHHHHHHHHHHHHhHHhcCccchhhH
Confidence            344557889999999999 6 56555544    43            2344443  89999998   9988776665222


Q ss_pred             HHHHH----------hhchhhhhhhcchhHHHHHHHHHHHHHHhcCCCCCCCc
Q psy7793          73 NQKIK----------DPFRPVARWKGKLEKRVQYMIEVLAQVRKDNFKDFPDV  115 (316)
Q Consensus        73 ~~~I~----------erlr~~iL~e~~i~~r~q~~IE~Lf~ir~~~fk~~p~v  115 (316)
                      . .++          ..+.. +.+++.++.|++|||+.++++|+++++.++.+
T Consensus       176 ~-~~~~~fq~y~~~~~~~~~-~~~~~~lp~ri~f~i~dll~lr~~~wk~~~~~  226 (248)
T d1uw4b_         176 D-CFLVYFQRYVWWKKSLEV-WTKDHPFPIDIDYMISDTLELLRPKIKLCNSL  226 (248)
T ss_dssp             H-HHHHHHHHHHHHHHTSTT-CCSSSCCCHHHHHHHHHHHHHHCTTCCCCSSH
T ss_pred             H-HHHHHHHHHHHHHHHHHH-HhccCCCCHHHHHHHHHHHHHHhCCCCcCCCh
Confidence            2 333          22444 45567899999999999999999999765444

>d1h2vc1 a.118.1.14 (C:29-290) CBP80, 80KDa nuclear cap-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: CBP80, 80KDa nuclear cap-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00018  Score=64.17  Aligned_cols=115  Identities=11%  Similarity=0.107  Sum_probs=78.3

Q ss_pred             chhhHhHHHHHHHHHhhcCccceeeeeeee----cccCCCCch---------HHHHHHHH---HHHHHhhhChhhhHHHH
Q psy7793          13 VFHKLRNVAKFFAHQLFTDAIGWHVLSCIH----LNEEETTSS---------GRIFIKIL---FQELSEYMGLSKLNQKI   76 (316)
Q Consensus        13 e~~ql~n~~kFlaHL~n~~~V~~~eililq----LlE~~Td~S---------vei~i~~L---Gq~L~e~~~~~~l~~~I   76 (316)
                      +-++++++.+|+|||+|++ | ++.-.+++    |++..++++         +.+++..|   |..|.+..+. +++ .+
T Consensus        92 ~~~~~~~llrFla~L~n~~-V-v~~~~i~~ll~~ll~~~~e~~~~~~~~d~~~~~vL~~LP~~g~~l~~~~~~-~~~-~l  167 (262)
T d1h2vc1          92 NYNEAVYLVRFLSDLVNCH-V-IAAPSMVAMFENFVSVTQEEDVPQVRRDWYVYAFLSSLPWVGKELYEKKDA-EMD-RI  167 (262)
T ss_dssp             CHHHHHHHHHHHHHHHHTT-S-BCHHHHHHHHHHHHHGGGCSSCCHHHHHHHHHHHHTTHHHHHHHHHHHHHH-HHH-HH
T ss_pred             CHHHHHHHHHHHHHHccCC-C-CcHhHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHHhcCHH-HHH-HH
Confidence            5688999999999999999 7 77766665    444443332         33444333   9999999888 887 88


Q ss_pred             Hhhchhhhh--------------hhc---chhHHHHHHHHHHHHHHhcCCCCCCCccCcCCCCCCCC-cceeEe
Q psy7793          77 KDPFRPVAR--------------WKG---KLEKRVQYMIEVLAQVRKDNFKDFPDVIEDLDLVPEED-KFTHLM  132 (316)
Q Consensus        77 ~erlr~~iL--------------~e~---~i~~r~q~~IE~Lf~ir~~~fk~~p~v~~eLdLve~~d-q~tH~i  132 (316)
                      .+++.. .+              +.+   .....+..+...+-++|+++++..+...|.++..+... ..+|..
T Consensus       168 l~~i~~-y~~~r~~~~~~ll~~~~~~~~~~~~~~l~~l~~qi~~l~~~~w~~~~i~rp~~~f~~~l~~~~~H~l  240 (262)
T d1h2vc1         168 FANTES-YLKRRQKTHVPMLQVWTADKPHPQEEYLDCLWAQIQKLKKDRWQERHILRPYLAFDSILCEALQHNL  240 (262)
T ss_dssp             HHHHHH-HHHTCCCTTHHHHCSBCCCSSCCCCBHHHHHHHHHHHHHHTTTCCSCCCCGGGGGTTTCCGGGCBCC
T ss_pred             HHHHHH-HHHhccccchhhhhccccCCCCcHHHHHHHHHHHHHHHHhcCCchhccCChhhhhHHHhhhcccCCC
Confidence            877664 21              111   22346677788888899999987776677776544332 445663