Psyllid ID: psy7794

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MEGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQKTENESKPESSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIFD
Secondary Structure (PSIPRED)
ccccccccccccccEEEHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEEEHcccccccccccccccHHHHccccccccccccccccccccHHHHHHHHHHHcccccccEccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
megvfprdnpkntrFAINFFTSiglggltryygdsgrkdqrdstkqtpqnkqkteneskpessepktstnilssktggayippaklKLMQQSISDKSSVEYQRISWETLKKSIhgsvnkvntgnIGIIARKLFQENIFD
Flexible Loop (DISEMBL)
megvfprdnpkntrfAINFFTSIGLGGLTRYYGDsgrkdqrdstkqtpqnkqkteneskpessepktstnilssktggaYIPPAKLKLMQQSISDKSSVEYQRISWETLkksihgsvnkvntgnigiIARKLFQENIFD
Low Complexity Region (SEG)
MEGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQkteneskpessepktstNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIFD
Disordered region (IsUnstruct)
************TRFAINFFTSIGLGGLTRYYG******************************************************************EYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQE****
Disordered Region (DISOPRED)
*EGVFP*DNPKNTRFAINFFTSIGLGGLT*************************************************AYIPPA********************SWETLKKSIHGSVNKVNTGNIGIIARKLFQENIFD
Disordered Region (DISEMBL)
MEGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGD***********************************NILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIFD
Disordered Region (DISPRO)
**GVFPRDNPKNTRFAINFFTSIGLGGLTRYY*****************************SSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIFD
Transmembrane Helix (TMHMM)
ooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQKTENESKPESSEPKTSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIFD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

No hits with e-value below 0.001 by BLAST

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
FB|FBgn0086707	1330	ncm "nucampholin" [Drosophila	0.741	0.077	0.475	4.3e-20
UNIPROTKB|F1MWG3	899	CWC22 "Uncharacterized protein	0.474	0.073	0.666	7.7e-19
UNIPROTKB|F1RYP5	904	CWC22 "Uncharacterized protein	0.474	0.073	0.666	7.7e-19
UNIPROTKB|J9P9J1	908	CWC22 "Uncharacterized protein	0.474	0.072	0.666	7.8e-19
UNIPROTKB|E2RIF6	914	CWC22 "Uncharacterized protein	0.474	0.072	0.666	7.9e-19
MGI|MGI:2136773	908	Cwc22 "CWC22 spliceosome-assoc	0.474	0.072	0.666	1.6e-18
UNIPROTKB|B7WP74	745	CWC22 "Pre-mRNA-splicing facto	0.474	0.088	0.651	2.5e-18
RGD|1565385	905	Cwc22 "CWC22 spliceosome-assoc	0.474	0.072	0.651	3.4e-18
UNIPROTKB|B7WP27	908	CWC22 "Pre-mRNA-splicing facto	0.474	0.072	0.651	3.4e-18
UNIPROTKB|Q9HCG8	908	CWC22 "Pre-mRNA-splicing facto	0.474	0.072	0.651	3.4e-18

FB|FBgn0086707 ncm "nucampholin" [Drosophila melanogaster (taxid:7227)]

 Score = 252 (93.8 bits), Expect = 4.3e-20, P = 4.3e-20
 Identities = 49/103 (47%), Positives = 65/103 (63%)

Query:    35 SGRKDQRDSTKQTPQNKQXXXXXXXXXXXXXXXXXNILSSKTGGAYIPPAKLKLMQQSIS 94
             S +  +   T +T  + +                 ++L+S+TGGAYIPPAKL++MQ  I+
Sbjct:   345 SSKTPRHTETTETNADNETVTEPAAKITERQRKTVDVLTSRTGGAYIPPAKLRMMQSQIT 404

Query:    95 DKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENI 137
             DKSS  YQRI+WE LKKSIHG +NKVN  NI II R+L +ENI
Sbjct:   405 DKSSAAYQRIAWEALKKSIHGYINKVNVTNIAIITRELLRENI 447

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

UNIPROTKB|F1MWG3 CWC22 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 238 (88.8 bits), Expect = 7.7e-19, P = 7.7e-19
 Identities = 44/66 (66%), Positives = 57/66 (86%)

Query:    72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
             L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN  NIGII ++
Sbjct:   123 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQE 182

Query:   132 LFQENI 137
             L QENI
Sbjct:   183 LLQENI 188

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|F1RYP5 CWC22 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 238 (88.8 bits), Expect = 7.7e-19, P = 7.7e-19
 Identities = 44/66 (66%), Positives = 57/66 (86%)

Query:    72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
             L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN  NIGII ++
Sbjct:   124 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQE 183

Query:   132 LFQENI 137
             L QENI
Sbjct:   184 LLQENI 189

GO:0071013 "catalytic step 2 spliceosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|J9P9J1 CWC22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 238 (88.8 bits), Expect = 7.8e-19, P = 7.8e-19
 Identities = 44/66 (66%), Positives = 57/66 (86%)

Query:    72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
             L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN  NIGII ++
Sbjct:   125 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQE 184

Query:   132 LFQENI 137
             L QENI
Sbjct:   185 LLQENI 190

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

UNIPROTKB|E2RIF6 CWC22 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 238 (88.8 bits), Expect = 7.9e-19, P = 7.9e-19
 Identities = 44/66 (66%), Positives = 57/66 (86%)

Query:    72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
             L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN  NIGII ++
Sbjct:   124 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNIGIIIQE 183

Query:   132 LFQENI 137
             L QENI
Sbjct:   184 LLQENI 189

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

MGI|MGI:2136773 Cwc22 "CWC22 spliceosome-associated protein homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 235 (87.8 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 44/66 (66%), Positives = 56/66 (84%)

Query:    72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
             L ++TGGAYIPPAKL++MQ+ I+DKSS+ YQR+SWE LKKSI+G +NKVN  NI II ++
Sbjct:   123 LLTRTGGAYIPPAKLRMMQEQITDKSSLAYQRMSWEALKKSINGLINKVNISNISIIIQE 182

Query:   132 LFQENI 137
             L QENI
Sbjct:   183 LLQENI 188

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

UNIPROTKB|B7WP74 CWC22 "Pre-mRNA-splicing factor CWC22 homolog" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 43/66 (65%), Positives = 56/66 (84%)

Query:    72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
             L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN  NI II ++
Sbjct:   125 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQE 184

Query:   132 LFQENI 137
             L QENI
Sbjct:   185 LLQENI 190

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

RGD|1565385 Cwc22 "CWC22 spliceosome-associated protein homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 232 (86.7 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 43/66 (65%), Positives = 56/66 (84%)

Query:    72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
             L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN  NI II ++
Sbjct:   126 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQE 185

Query:   132 LFQENI 137
             L QENI
Sbjct:   186 LLQENI 191

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA;ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005681 "spliceosomal complex" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0071013 "catalytic step 2 spliceosome" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|B7WP27 CWC22 "Pre-mRNA-splicing factor CWC22 homolog" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 43/66 (65%), Positives = 56/66 (84%)

Query:    72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
             L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN  NI II ++
Sbjct:   125 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQE 184

Query:   132 LFQENI 137
             L QENI
Sbjct:   185 LLQENI 190

GO:0003677 "DNA binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0016070 "RNA metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q9HCG8 CWC22 "Pre-mRNA-splicing factor CWC22 homolog" [Homo sapiens (taxid:9606)]

 Score = 232 (86.7 bits), Expect = 3.4e-18, P = 3.4e-18
 Identities = 43/66 (65%), Positives = 56/66 (84%)

Query:    72 LSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARK 131
             L ++TGGAYIPPAKL++MQ+ I+DK+S+ YQR+SWE LKKSI+G +NKVN  NI II ++
Sbjct:   125 LLTRTGGAYIPPAKLRMMQEQITDKNSLAYQRMSWEALKKSINGLINKVNISNISIIIQE 184

Query:   132 LFQENI 137
             L QENI
Sbjct:   185 LLQENI 190

GO:0003677 "DNA binding" evidence=IEA

GO:0048024 "regulation of mRNA splicing, via spliceosome" evidence=IC

GO:0003723 "RNA binding" evidence=IDA

GO:0005681 "spliceosomal complex" evidence=IDA

GO:0000398 "mRNA splicing, via spliceosome" evidence=IC

GO:0071013 "catalytic step 2 spliceosome" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG2140|consensus	739		99.96
KOG2140|consensus	739		99.69
KOG2141|consensus	822		96.88

>KOG2140|consensus

Probab=99.96  E-value=2e-30  Score=233.95  Aligned_cols=73  Identities=60%  Similarity=1.000  Sum_probs=69.9

Q ss_pred             CCCCccCCCCCCCCCCHHHHHHHhhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCcHHHHHHHHHHhhcCC
Q psy7794          67 TSTNILSSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENIFD  139 (139)
Q Consensus        67 sssdslsSr~GG~YIpp~kl~~~~~~~~d~~s~eyQR~~We~LkksInglvNkvn~sNI~~iv~ELF~eNlir  139 (139)
                      ++.+++.+|+||+|||||||++||++++|++|.+||||+||+|||+|||||||||.+||++|++|||+|||||
T Consensus       122 ~P~~l~~trtGG~YIPPaKL~~mq~qi~Dk~s~~yQRmnWEalkksInglInkvn~sNi~~ii~eLfqeNiir  194 (739)
T KOG2140|consen  122 DPLDLLRTRTGGAYIPPAKLRMMQAQITDKNSIEYQRMNWEALKKSINGLINKVNASNIQEIIRELFQENIIR  194 (739)
T ss_pred             CHHHHhhccCCCeecCHHHHHHHHHHhcccchHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHHHHHHHHh
Confidence            3446788999999999999999999999999999999999999999999999999999999999999999997

>KOG2140|consensus

Probab=99.69  E-value=5.6e-18  Score=153.82  Aligned_cols=49  Identities=57%  Similarity=0.966  Sum_probs=44.2

Q ss_pred             CCCCCCCCCCCCcceechhhhhcccccccccccCcchhhhhhhcccCCccccc
Q psy7794           1 MEGVFPRDNPKNTRFAINFFTSIGLGGLTRYYGDSGRKDQRDSTKQTPQNKQK   53 (139)
Q Consensus         1 ~~glfp~d~~~~~rfaiN~ft~iglg~lt~~~~~~~~~~~~~~~~~~~~~k~~   53 (139)
                      |.||||.|||+|+||||||||+||||+||+    +||++|...+|...+.++.
T Consensus       611 l~glFP~dnp~n~RfsINfFTsIGLGgLTe----elRe~L~~~pk~~~a~~eq  659 (739)
T KOG2140|consen  611 LEGLFPRDNPRNTRFSINFFTSIGLGGLTE----ELREYLKNMPKVEDAEKEQ  659 (739)
T ss_pred             hhccCcCCCcccceeeeehhhhhccccchH----HHHHHHHhcchhhhhhHHH
Confidence            689999999999999999999999999997    6899999998888766643

>KOG2141|consensus

Probab=96.88  E-value=0.0019  Score=61.40  Aligned_cols=53  Identities=28%  Similarity=0.498  Sum_probs=43.5

Q ss_pred             CCCCCCCCCCHHHHHHHhhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCcHHHHHHHHH
Q psy7794          73 SSKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLF  133 (139)
Q Consensus        73 sSr~GG~YIpp~kl~~~~~~~~d~~s~eyQR~~We~LkksInglvNkvn~sNI~~iv~ELF  133 (139)
                      .+-+|..||||+=-+.|.   +++++++.||     |++.+||++||++.+||-.|+.+|=
T Consensus       291 ~~~s~sKYvPPslRkkl~---~~~~sE~l~r-----l~rkv~g~LNKLSdaNi~~I~~~i~  343 (822)
T KOG2141|consen  291 KINSSSKYVPPSLRKKLE---TSSESEQLQR-----LRRKVNGSLNKLSDANIIKIIAGIA  343 (822)
T ss_pred             ccccccccCCHHHHHHhc---CccchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355677899999655554   6778888887     6899999999999999999988763

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Homologous Structure Templates

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
2vso_E	284	Eukaryotic initiation factor 4F subunit P150; acet	98.93
3rk6_A	234	Polyadenylate-binding protein-interacting protein;	85.09

>2vso_E Eukaryotic initiation factor 4F subunit P150; acetylation, ATP-binding, phosphoprotein, protein biosynthesis, translation regulation; HET: AMP; 2.6A {Saccharomyces cerevisiae} PDB: 2vsx_E*

Probab=98.93  E-value=2.1e-10  Score=93.50  Aligned_cols=62  Identities=10%  Similarity=0.219  Sum_probs=40.6

Q ss_pred             CCCCCCCCCHHHHHHHhhhccCCCchHHHHHHHHHHHHHHhhhhhhccCCcHHHHHHHHHHhhc
Q psy7794          74 SKTGGAYIPPAKLKLMQQSISDKSSVEYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENI  137 (139)
Q Consensus        74 Sr~GG~YIpp~kl~~~~~~~~d~~s~eyQR~~We~LkksInglvNkvn~sNI~~iv~ELF~eNl  137 (139)
                      .+++|+|+||++.+.++.+..+.++  .|+..|++|+|+|+|++||||.+|+..|+.+|+..|+
T Consensus         3 ~~s~~~w~P~~~~~~~~~~~~~~~~--~~~~~~e~l~r~vkgiLNKLT~~nf~~i~~ql~~~~~   64 (284)
T 2vso_E            3 VPSANRWVPKFKSKKTEKKLAPDGK--TELLDKDEVERKMKSLLNKLTLEMFDAISSEILAIAN   64 (284)
T ss_dssp             ----CCCCCC-----------------CCCCCHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHH
T ss_pred             CCCCCCCCChhhhcccccccCCCcc--cccccHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHh
Confidence            4688999999999887655433222  2788999999999999999999999999999999876

>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}

Probab=85.09  E-value=0.39  Score=38.11  Aligned_cols=30  Identities=13%  Similarity=0.214  Sum_probs=25.7

Q ss_pred             HHHHHHHHhhhhhhcc--CCcHHHHHHHHHHh
Q psy7794         106 WETLKKSIHGSVNKVN--TGNIGIIARKLFQE  135 (139)
Q Consensus       106 We~LkksInglvNkvn--~sNI~~iv~ELF~e  135 (139)
                      =+.|++.++|++||++  .+|...++.+++..
T Consensus        16 ~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~   47 (234)
T 3rk6_A           16 GSTLSEYVQDFLNHLTEQPGSFETEIEQFAET   47 (234)
T ss_dssp             --CHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHccCChhhHHHHHHHHHHH
Confidence            4679999999999999  99999999887764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d1hu3a_	243	a.118.1.14 (A:) Eukaryotic initiation factor eIF4G	0.001

>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human (Homo sapiens) [TaxId: 9606]} Length = 243

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: MIF4G domain-like
domain: Eukaryotic initiation factor eIF4G
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 4/38 (10%), Positives = 16/38 (42%)

Query: 100 EYQRISWETLKKSIHGSVNKVNTGNIGIIARKLFQENI 137
           + + I  + L + +   +NK+       + +++    +
Sbjct: 2   DPENIKTQELFRKVRSILNKLTPQMFNQLMKQVSGLTV 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00