Psyllid ID: psy7817

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------23
EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVKD
cHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHcHHHHHHHHHcccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHcccccEEcccccccHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccc
cHHHHHHHHHHHHHHHHHHHcccccEcccccccccccHHHHHHHHHHHccccccccccccEHHHHHHHHHHHHHHHHHcccccccccHHHHHcccHHHHHHHHHHHHHHHHcccEEEcHHHHHHHccccccccccccccHHHHHHHHHHHHcccccccccccHHHcccHHHHHHHHHHccccccHHHHHHccHHHHHHHHHHHHHHHHccccccccHHHHHHHccccc
EQERVQKKTFVNWINSYlskrhpplriddlteDLKDGTKLLALLEVLsneklpvekgrnlrrphflsNANTALQFLQSKRiklvninssdlvdgrpAVVLGLIWTIILYFQIEENTRALAALSaegytspepgkkdvESAKKTLLRWVSNalpehikvsdfgpswrdghAFLSVIDNIQKDlvdipalskqtnrhRLDTAFNVAESNLGIARLLDPEVRQFLFLHVKD
eqervqkkTFVNWInsylskrhpplriDDLTEDLKDGTKLLALLEvlsneklpvekgrnlrrphfLSNANTALQFLQSKRIKLVninssdlvdgrpAVVLGLIWTIILYFQIEENTRALAALSAEgytspepgkkdvESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVKD
EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVKD
********TFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAAL********************TLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHV**
EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVE*GRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA*************************LLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVK*
EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVKD
EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSP*****DVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLH***
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVKD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query228 2.2.26 [Sep-21-2011]
Q6ZWR6 8799 Nesprin-1 OS=Mus musculus yes N/A 0.951 0.024 0.529 7e-64
Q8NF91 8797 Nesprin-1 OS=Homo sapiens yes N/A 0.951 0.024 0.529 3e-63
Q6ZWQ0 6874 Nesprin-2 OS=Mus musculus no N/A 0.942 0.031 0.430 7e-45
Q8WXH0 6885 Nesprin-2 OS=Homo sapiens no N/A 0.938 0.031 0.415 3e-42
D3ZHV2 5430 Microtubule-actin cross-l no N/A 0.859 0.036 0.461 4e-42
Q9UPN3 7388 Microtubule-actin cross-l no N/A 0.859 0.026 0.461 5e-42
Q9QXZ0 7354 Microtubule-actin cross-l no N/A 0.859 0.026 0.457 7e-42
Q15149 4684 Plectin OS=Homo sapiens G no N/A 0.864 0.042 0.434 8e-42
P11277 2137 Spectrin beta chain, eryt no N/A 0.881 0.094 0.463 1e-41
Q9QXS1 4691 Plectin OS=Mus musculus G no N/A 0.864 0.041 0.424 2e-41
>sp|Q6ZWR6|SYNE1_MOUSE Nesprin-1 OS=Mus musculus GN=Syne1 PE=1 SV=2 Back     alignment and function desciption
 Score =  243 bits (620), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 125/236 (52%), Positives = 163/236 (69%), Gaps = 19/236 (8%)

Query: 1   EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
           EQE VQK+TF  WINS+L+KR PP+ +DDL ED+KDG KLLALLEVLS +KLP E+G  +
Sbjct: 24  EQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGIKLLALLEVLSGQKLPCEQGHRV 83

Query: 61  RRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALA 120
           +R H ++N  TAL+FL+ ++IKLVNIN++D+ DGRP++VLGL+WTIILYFQIEE T  L 
Sbjct: 84  KRIHAVANIGTALKFLEGRKIKLVNINATDIADGRPSIVLGLMWTIILYFQIEELTSNLP 143

Query: 121 ALSAEGY------------TSPEPGKKDVES-----AKKTLLRWVSNALPEH--IKVSDF 161
            L +               T+  P K+ V +     AKKTLL+WV +   +   I+V DF
Sbjct: 144 QLQSLSSSASSVDSMVSTETASPPSKRKVAAKIQGNAKKTLLKWVQHTAGKQMGIEVKDF 203

Query: 162 GPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
           G SWR G AF SVI  IQ +LVD+  +  ++NR  L+ AF +AE+ LGI RLLDPE
Sbjct: 204 GKSWRTGLAFHSVIHAIQPELVDLEKVKTRSNRENLEDAFTIAETQLGIPRLLDPE 259
Multi-isomeric modular protein which forms a linking network between organelles and the actin cytoskeleton to maintain the subcellular spatial organization. Component of SUN-protein-containing multivariate complexes also called LINC complexes which link the nucleoskeleton and cytoskeleton by providing versatile outer nuclear membrane attachment sites for cytoskeletal filaments. Involved in the maintenance of nuclear organization and structural integrity. Connects nuclei to the cytoskeleton by interacting with the nuclear envelope and with F-actin in the cytoplasm (By similarity). Required for centrosome migration to the apical cell surface during early ciliogenesis.
Mus musculus (taxid: 10090)
>sp|Q8NF91|SYNE1_HUMAN Nesprin-1 OS=Homo sapiens GN=SYNE1 PE=1 SV=4 Back     alignment and function description
>sp|Q6ZWQ0|SYNE2_MOUSE Nesprin-2 OS=Mus musculus GN=Syne2 PE=1 SV=2 Back     alignment and function description
>sp|Q8WXH0|SYNE2_HUMAN Nesprin-2 OS=Homo sapiens GN=SYNE2 PE=1 SV=3 Back     alignment and function description
>sp|D3ZHV2|MACF1_RAT Microtubule-actin cross-linking factor 1 OS=Rattus norvegicus GN=Macf1 PE=1 SV=1 Back     alignment and function description
>sp|Q9UPN3|MACF1_HUMAN Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5 OS=Homo sapiens GN=MACF1 PE=1 SV=4 Back     alignment and function description
>sp|Q9QXZ0|MACF1_MOUSE Microtubule-actin cross-linking factor 1 OS=Mus musculus GN=Macf1 PE=1 SV=2 Back     alignment and function description
>sp|Q15149|PLEC_HUMAN Plectin OS=Homo sapiens GN=PLEC PE=1 SV=3 Back     alignment and function description
>sp|P11277|SPTB1_HUMAN Spectrin beta chain, erythrocytic OS=Homo sapiens GN=SPTB PE=1 SV=5 Back     alignment and function description
>sp|Q9QXS1|PLEC_MOUSE Plectin OS=Mus musculus GN=Plec PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
340709092 16892 PREDICTED: hypothetical protein LOC10064 0.951 0.012 0.717 7e-90
350413217 7873 PREDICTED: nesprin-1-like [Bombus impati 0.951 0.027 0.717 8e-90
383859152 12235 PREDICTED: nesprin-1-like [Megachile rot 0.951 0.017 0.717 3e-89
328698520 3808 PREDICTED: hypothetical protein LOC10016 0.947 0.056 0.7 9e-87
307206051 7966 Nesprin-1 [Harpegnathos saltator] 0.951 0.027 0.694 2e-86
345495296 7973 PREDICTED: nesprin-1-like [Nasonia vitri 0.951 0.027 0.690 9e-86
189240992 12040 PREDICTED: similar to Muscle-specific pr 0.942 0.017 0.719 4e-84
270014225 15417 muscle-specific protein 300 [Tribolium c 0.942 0.013 0.719 7e-84
307175148 7969 Nesprin-1 [Camponotus floridanus] 0.951 0.027 0.677 1e-83
194760671 8003 GF14378 [Drosophila ananassae] gi|190616 0.951 0.027 0.676 2e-79
>gi|340709092|ref|XP_003393148.1| PREDICTED: hypothetical protein LOC100648310 [Bombus terrestris] Back     alignment and taxonomy information
 Score =  335 bits (860), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 168/234 (71%), Positives = 192/234 (82%), Gaps = 17/234 (7%)

Query: 1   EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
           EQERVQKKTFVNWINSYLSKR PPLR+DDL EDLKDGT+LLALLEVLS EKLPVE+GRNL
Sbjct: 197 EQERVQKKTFVNWINSYLSKRSPPLRVDDLIEDLKDGTRLLALLEVLSGEKLPVERGRNL 256

Query: 61  RRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA-- 118
           +RPHFLSNANTALQFLQSK+IKLVNINSSDLVDGRP VVLGLIWTIILYFQIEENTRA  
Sbjct: 257 KRPHFLSNANTALQFLQSKKIKLVNINSSDLVDGRPPVVLGLIWTIILYFQIEENTRALE 316

Query: 119 -----------LAALSAEGYTSPE----PGKKDVESAKKTLLRWVSNALPEHIKVSDFGP 163
                      L +LS +G  + E      +K  + A+KTLL+WV+NALP+ I+V DFG 
Sbjct: 317 YLGHTWGSQSSLESLSTQGSATSERKRISSEKWKQGARKTLLQWVTNALPKDIQVRDFGE 376

Query: 164 SWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
           SWRDG+AFL++ID I+ +LV+I A+ + TNR RL TAF+VAES LGIARLLDPE
Sbjct: 377 SWRDGNAFLAIIDAIKANLVNIAAMREATNRARLATAFDVAESELGIARLLDPE 430

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350413217|ref|XP_003489920.1| PREDICTED: nesprin-1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|383859152|ref|XP_003705060.1| PREDICTED: nesprin-1-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|328698520|ref|XP_001949103.2| PREDICTED: hypothetical protein LOC100165351 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|307206051|gb|EFN84144.1| Nesprin-1 [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|345495296|ref|XP_001606812.2| PREDICTED: nesprin-1-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|189240992|ref|XP_001809722.1| PREDICTED: similar to Muscle-specific protein 300 CG33715-PD [Tribolium castaneum] Back     alignment and taxonomy information
>gi|270014225|gb|EFA10673.1| muscle-specific protein 300 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|307175148|gb|EFN65250.1| Nesprin-1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|194760671|ref|XP_001962561.1| GF14378 [Drosophila ananassae] gi|190616258|gb|EDV31782.1| GF14378 [Drosophila ananassae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query228
UNIPROTKB|F5GYQ7 615 SYNE1 "Nesprin-1" [Homo sapien 0.543 0.201 0.645 1.6e-58
UNIPROTKB|F5H4Q0 754 SYNE1 "Nesprin-1" [Homo sapien 0.543 0.164 0.645 3.2e-57
ZFIN|ZDB-GENE-071218-4 8759 syne1b "spectrin repeat contai 0.543 0.014 0.645 8e-56
MGI|MGI:1927152 8799 Syne1 "spectrin repeat contain 0.543 0.014 0.629 3.1e-54
UNIPROTKB|E7ENN3 8409 SYNE1 "Nesprin-1" [Homo sapien 0.543 0.014 0.645 5.7e-54
UNIPROTKB|Q8NF91 8797 SYNE1 "Nesprin-1" [Homo sapien 0.543 0.014 0.645 6.3e-54
UNIPROTKB|F1NG02 8787 SYNE1 "Uncharacterized protein 0.543 0.014 0.629 1e-53
UNIPROTKB|F5GXQ8 1433 SYNE1 "Nesprin-1" [Homo sapien 0.543 0.086 0.610 1.2e-53
UNIPROTKB|E9PEL9 8749 SYNE1 "Nesprin-1" [Homo sapien 0.543 0.014 0.610 1e-51
UNIPROTKB|F1N7N9 527 SYNE2 "Uncharacterized protein 0.513 0.222 0.546 8.8e-44
UNIPROTKB|F5GYQ7 SYNE1 "Nesprin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
 Score = 424 (154.3 bits), Expect = 1.6e-58, Sum P(2) = 1.6e-58
 Identities = 80/124 (64%), Positives = 102/124 (82%)

Query:     1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
             EQE VQK+TF  WINS+L+KR PP+ +DDL ED+KDG KLLALLEVLS +KLP E+GR +
Sbjct:    24 EQEIVQKRTFTKWINSHLAKRKPPMVVDDLFEDMKDGVKLLALLEVLSGQKLPCEQGRRM 83

Query:    61 RRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALA 120
             +R H ++N  TAL+FL+ ++IKLVNINS+D+ DGRP++VLGL+WTIILYFQIEE T  L 
Sbjct:    84 KRIHAVANIGTALKFLEGRKIKLVNINSTDIADGRPSIVLGLMWTIILYFQIEELTSNLP 143

Query:   121 ALSA 124
              L +
Sbjct:   144 QLQS 147
GO:0003779 "actin binding" evidence=IEA
UNIPROTKB|F5H4Q0 SYNE1 "Nesprin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-071218-4 syne1b "spectrin repeat containing, nuclear envelope 1b" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1927152 Syne1 "spectrin repeat containing, nuclear envelope 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E7ENN3 SYNE1 "Nesprin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q8NF91 SYNE1 "Nesprin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1NG02 SYNE1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F5GXQ8 SYNE1 "Nesprin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E9PEL9 SYNE1 "Nesprin-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1N7N9 SYNE2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8NF91SYNE1_HUMANNo assigned EC number0.52960.95170.0246yesN/A
Q6ZWR6SYNE1_MOUSENo assigned EC number0.52960.95170.0246yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
COG5069 612 COG5069, SAC6, Ca2+-binding actin-bundling protein 1e-29
cd00014107 cd00014, CH, Calponin homology domain; actin-bindi 1e-21
pfam00307104 pfam00307, CH, Calponin homology (CH) domain 6e-18
smart00033101 smart00033, CH, Calponin homology domain 4e-17
pfam00307104 pfam00307, CH, Calponin homology (CH) domain 3e-12
smart00033101 smart00033, CH, Calponin homology domain 4e-08
cd00014107 cd00014, CH, Calponin homology domain; actin-bindi 1e-07
>gnl|CDD|227401 COG5069, SAC6, Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information 
 Score =  115 bits (288), Expect = 1e-29
 Identities = 77/225 (34%), Positives = 104/225 (46%), Gaps = 27/225 (12%)

Query: 1   EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGRNL 60
           + ++VQKKTF  W N  L          DL  DLKDG KL  LLE L  +    E     
Sbjct: 5   KWQKVQKKTFTKWTNEKLISGGQK-EFGDLDTDLKDGVKLAQLLEALQKDNA-GEYNETP 62

Query: 61  R-RPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRAL 119
             R H + N +  L+F++ K +KL NI   D+VDG P ++LGLIW++I    I       
Sbjct: 63  ETRIHVMENVSGRLEFIKGKGVKLFNIGPQDIVDGNPKLILGLIWSLISRLTI------- 115

Query: 120 AALSAEGYTSPEPGKKDVESAKKTLLRW----VSNALPEHIKVSDFGPSWRDGHAFLSVI 175
           A ++ EG            +    LL W         PE +   DF  SWRDG AF ++I
Sbjct: 116 ATINEEGEL----------TKHINLLLWCDEDTGGYKPE-VDTFDFFRSWRDGLAFSALI 164

Query: 176 DNIQKDLVDIPALSKQTNRHRLDT--AFNVAESNLGIARLLDPEV 218
            + + D +D   L  Q     L+   AF  A   +GIARL+  E 
Sbjct: 165 HDSRPDTLDPNVLDLQKKNKALNNFQAFENANKVIGIARLIGVED 209

Length = 612
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain Back     alignment and domain information
>gnl|CDD|214479 smart00033, CH, Calponin homology domain Back     alignment and domain information
>gnl|CDD|215849 pfam00307, CH, Calponin homology (CH) domain Back     alignment and domain information
>gnl|CDD|214479 smart00033, CH, Calponin homology domain Back     alignment and domain information
>gnl|CDD|237981 cd00014, CH, Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 228
KOG0517|consensus 2473 100.0
KOG0046|consensus 627 100.0
COG5069 612 SAC6 Ca2+-binding actin-bundling protein fimbrin/p 99.97
KOG0046|consensus627 99.97
KOG0035|consensus 890 99.97
cd00014107 CH Calponin homology domain; actin-binding domain 99.81
smart00033103 CH Calponin homology domain. Actin binding domains 99.77
KOG3631|consensus365 99.73
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 99.73
PF00307108 CH: Calponin homology (CH) domain; InterPro: IPR00 99.57
COG5069 612 SAC6 Ca2+-binding actin-bundling protein fimbrin/p 99.51
cd00014107 CH Calponin homology domain; actin-binding domain 99.48
smart00033103 CH Calponin homology domain. Actin binding domains 99.42
KOG3631|consensus365 99.4
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 99.27
KOG2046|consensus193 98.68
KOG0518|consensus 1113 98.66
COG5199178 SCP1 Calponin [Cytoskeleton] 98.28
PF1197185 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 T 98.12
KOG0516|consensus 1047 97.63
PF06294158 DUF1042: Domain of Unknown Function (DUF1042); Int 97.58
KOG0035|consensus 890 97.34
PF06294158 DUF1042: Domain of Unknown Function (DUF1042); Int 97.14
KOG0517|consensus 2473 96.88
KOG0532|consensus722 96.78
KOG2996|consensus 865 96.33
KOG2046|consensus193 95.87
KOG0532|consensus722 94.38
KOG2128|consensus 1401 94.37
KOG2996|consensus 865 91.72
PF05622 713 HOOK: HOOK protein; InterPro: IPR008636 This famil 87.5
COG5261 1054 IQG1 Protein involved in regulation of cellular mo 86.97
COG5199178 SCP1 Calponin [Cytoskeleton] 86.47
KOG3000|consensus295 84.67
KOG3000|consensus 295 82.37
>KOG0517|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-52  Score=401.54  Aligned_cols=212  Identities=47%  Similarity=0.728  Sum_probs=194.6

Q ss_pred             ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCcC-CCCCCccchhhhHHHHHHHHHhC
Q psy7817           1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEK-GRNLRRPHFLSNANTALQFLQSK   79 (228)
Q Consensus         1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~~-~~~~~~~~~i~N~~~~l~~~~~~   79 (228)
                      |++.+||||||+|+|+||...  .+.|.|||+||+||+.|++|+|+|+|+.+|.+. ++.  |+|++||+++||+|++..
T Consensus        44 ERe~vQKKTFTKWvNShL~rv--~c~I~DLy~DlrDG~~LlkLLEvlSGE~LpkPtrGRM--RIH~LENvdKaLqFLkeq  119 (2473)
T KOG0517|consen   44 EREAVQKKTFTKWVNSHLARV--SCRIGDLYTDLRDGIMLLKLLEVLSGERLPKPTRGRM--RIHCLENVDKALQFLKEQ  119 (2473)
T ss_pred             HHHHHHHHhHHHHHHHHHHHh--cchhHHHHHHHhhhHHHHHHHHHHccccCCCCCCCce--eehhHhhhHHHHHHHHhc
Confidence            688999999999999999643  688999999999999999999999999999764 444  899999999999999999


Q ss_pred             CceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCC--cc
Q psy7817          80 RIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IK  157 (228)
Q Consensus        80 g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~--~~  157 (228)
                      .+.+.+|+++||||||..+||||||+||++|||+++.-.     .       ..+.+..+++.+||-||+.++.+|  +.
T Consensus       120 kVhLEniGshDIVDGN~rL~LGLIWTIILRFQIq~I~ie-----~-------edn~E~rSAKDALLLWCQmKTAGYpnVN  187 (2473)
T KOG0517|consen  120 KVHLENIGSHDIVDGNHRLILGLIWTIILRFQIQDISIE-----T-------EDNRETRSAKDALLLWCQMKTAGYPNVN  187 (2473)
T ss_pred             ccccccCCcccccCCcchhhHHHHHHHHHheeeeeeEee-----c-------ccchhhhhHHHHHHHHHHhhccCCCCcc
Confidence            999999999999999999999999999999999863211     1       111255689999999999999999  99


Q ss_pred             eecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhcccCCCCCC
Q psy7817         158 VSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVKD  228 (228)
Q Consensus       158 I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~~~~~~~  228 (228)
                      |+|||+||+||.+|.+|||+.+|+++||+.+.++++..|++.||+.|+.+|||+++|+||||..-+||+|.
T Consensus       188 I~nFTtSWRdGLaFNALIHkHRPDLvDf~~L~k~na~~NL~~AFdvAE~~LGia~LLDpEDV~v~~PDEKS  258 (2473)
T KOG0517|consen  188 ITNFTTSWRDGLAFNALIHKHRPDLVDFDKLKKSNALYNLQHAFDVAEQELGIAKLLDPEDVNVEQPDEKS  258 (2473)
T ss_pred             cccCccchhcchhHHHHHHhcCcchhhhcccCCCchhhHHHHHHHHHHHHcCchhcCCHhhcCccCCCcch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999983

>KOG0046|consensus Back     alignment and domain information
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information
>KOG0046|consensus Back     alignment and domain information
>KOG0035|consensus Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>KOG3631|consensus Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>PF00307 CH: Calponin homology (CH) domain; InterPro: IPR001715 The calponin homology domain (also known as CH-domain) is a superfamily of actin-binding domains found in both cytoskeletal proteins and signal transduction proteins [] Back     alignment and domain information
>COG5069 SAC6 Ca2+-binding actin-bundling protein fimbrin/plastin (EF-Hand superfamily) [Cytoskeleton] Back     alignment and domain information
>cd00014 CH Calponin homology domain; actin-binding domain which may be present as a single copy or in tandem repeats (which increases binding affinity) Back     alignment and domain information
>smart00033 CH Calponin homology domain Back     alignment and domain information
>KOG3631|consensus Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>KOG2046|consensus Back     alignment and domain information
>KOG0518|consensus Back     alignment and domain information
>COG5199 SCP1 Calponin [Cytoskeleton] Back     alignment and domain information
>PF11971 CAMSAP_CH: CAMSAP CH domain; InterPro: IPR022613 This domain is the N-terminal CH domain from calmodulin-regulated spectrin-associated proteins - CAMSAP proteins Back     alignment and domain information
>KOG0516|consensus Back     alignment and domain information
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function Back     alignment and domain information
>KOG0035|consensus Back     alignment and domain information
>PF06294 DUF1042: Domain of Unknown Function (DUF1042); InterPro: IPR010441 This is a family of proteins of unknown function Back     alignment and domain information
>KOG0517|consensus Back     alignment and domain information
>KOG0532|consensus Back     alignment and domain information
>KOG2996|consensus Back     alignment and domain information
>KOG2046|consensus Back     alignment and domain information
>KOG0532|consensus Back     alignment and domain information
>KOG2128|consensus Back     alignment and domain information
>KOG2996|consensus Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>COG5261 IQG1 Protein involved in regulation of cellular morphogenesis/cytokinesis [Cell division and chromosome partitioning / Signal transduction mechanisms] Back     alignment and domain information
>COG5199 SCP1 Calponin [Cytoskeleton] Back     alignment and domain information
>KOG3000|consensus Back     alignment and domain information
>KOG3000|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
3f7p_A296 Crystal Structure Of A Complex Between Integrin Bet 3e-42
1sh5_A245 Crystal Structure Of Actin-Binding Domain Of Mouse 7e-42
1mb8_A243 Crystal Structure Of The Actin Binding Domain Of Pl 1e-41
1dxx_A246 N-Terminal Actin-Binding Domain Of Human Dystrophin 8e-36
2eyi_A234 Crystal Structure Of The Actin-Binding Domain Of Hu 2e-32
1wku_A254 High Resolution Structure Of The Human Alpha-Actini 3e-32
1tjt_A250 X-Ray Structure Of The Human Alpha-Actinin Isoform 3e-32
1qag_A226 Actin Binding Region Of The Dystrophin Homologue Ut 8e-32
2r0o_A237 Crystal Structure Of The Actin-Binding Domain Of Hu 1e-31
1sjj_A 863 Cryo-Em Structure Of Chicken Gizzard Smooth Muscle 5e-31
2wa5_A245 Crystal Structure Of Human Filamin B Actin Binding 6e-25
4b7l_A 347 Crystal Structure Of Human Filamin B Actin Binding 6e-25
2wa7_A245 Structure Of The M202v Mutant Of Human Filamin B Ac 9e-25
3hoc_A272 Structure Of The Actin-Binding Domain Of Human Fila 5e-24
3hop_A272 Structure Of The Actin-Binding Domain Of Human Fila 5e-24
2wfn_A278 Filamin A Actin Binding Domain Length = 278 6e-24
3fer_A262 Crystal Structure Of N-Terminal Actin-Binding Domai 1e-23
2wa6_A245 Structure Of The W148r Mutant Of Human Filamin B Ac 4e-23
3lue_K109 Model Of Alpha-Actinin Ch1 Bound To F-Actin Length 3e-21
1bkr_A109 Calponin Homology (Ch) Domain From Human Beta-Spect 2e-11
1aa2_A108 Calponin Homology (Ch) Domain From Human Beta-Spect 2e-11
2yrn_A129 Solution Structure Of The Ch Domain From Human Neur 4e-11
1wyq_A127 Solution Structure Of The Second Ch Domain Of Human 6e-11
1aoa_A275 N-Terminal Actin-Crosslinking Domain From Human Fim 2e-10
2d87_A128 Solution Structure Of The Ch Domain From Human Smoo 5e-08
1bhd_A118 Second Calponin Homology Domain From Utrophin Lengt 4e-07
2d89_A119 Solution Structure Of The Ch Domain From Human Eh D 5e-06
2jv9_A119 The Solution Structure Of Calponin Homology Domain 5e-05
2d88_A121 Solution Structure Of The Ch Domain From Human Mica 2e-04
1pxy_A 506 Crystal Structure Of The Actin-Crosslinking Core Of 2e-04
2e9k_A121 Solution Structure Of The Ch Domain From Human Mica 6e-04
>pdb|3F7P|A Chain A, Crystal Structure Of A Complex Between Integrin Beta4 And Plectin Length = 296 Back     alignment and structure 
Iteration: 1

 Score =  167 bits (424), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/221 (43%), Positives = 136/221 (61%), Gaps = 24/221 (10%)
Query: 1   EQERVQKKTFVNWINSYL--SKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKGR 58
           E++RVQKKTF  W+N +L  ++RH    I DL EDL+DG  L++LLEVLS + LP EKGR
Sbjct: 69  ERDRVQKKTFTKWVNKHLIKAQRH----ISDLYEDLRDGHNLISLLEVLSGDSLPREKGR 124
Query: 59  NLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRA 118
              R H L N   AL +L+ +++KLVNI + D+ DG P + LGLIWTIIL+FQI +   +
Sbjct: 125 --MRFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQVS 182
Query: 119 LAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVID 176
                         G+ +  +AK+ LL W    +  +  ++  +F  SWRDG  F ++I 
Sbjct: 183 --------------GQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTSSWRDGRLFNAIIH 228
Query: 177 NIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
             +  L+D+  + +QTN   LD AF+VAE +LG+ RLLDPE
Sbjct: 229 RHKPLLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPE 269
>pdb|1SH5|A Chain A, Crystal Structure Of Actin-Binding Domain Of Mouse Plectin Length = 245 Back     alignment and structure
>pdb|1MB8|A Chain A, Crystal Structure Of The Actin Binding Domain Of Plectin Length = 243 Back     alignment and structure
>pdb|1DXX|A Chain A, N-Terminal Actin-Binding Domain Of Human Dystrophin Length = 246 Back     alignment and structure
>pdb|2EYI|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin 1 At 1.7 Angstrom Resolution Length = 234 Back     alignment and structure
>pdb|1WKU|A Chain A, High Resolution Structure Of The Human Alpha-Actinin Isoform 3 Length = 254 Back     alignment and structure
>pdb|1TJT|A Chain A, X-Ray Structure Of The Human Alpha-Actinin Isoform 3 At 2.2a Resolution Length = 250 Back     alignment and structure
>pdb|1QAG|A Chain A, Actin Binding Region Of The Dystrophin Homologue Utrophin Length = 226 Back     alignment and structure
>pdb|2R0O|A Chain A, Crystal Structure Of The Actin-Binding Domain Of Human Alpha-Actinin-4 Mutant(K255e) Length = 237 Back     alignment and structure
>pdb|1SJJ|A Chain A, Cryo-Em Structure Of Chicken Gizzard Smooth Muscle Alpha- Actinin Length = 863 Back     alignment and structure
>pdb|2WA5|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain At 1.9 Angstroms Resolution Length = 245 Back     alignment and structure
>pdb|4B7L|A Chain A, Crystal Structure Of Human Filamin B Actin Binding Domain With 1st Filamin Repeat Length = 347 Back     alignment and structure
>pdb|2WA7|A Chain A, Structure Of The M202v Mutant Of Human Filamin B Actin Binding Domain At 1.85 Angstroms Resolution Length = 245 Back     alignment and structure
>pdb|3HOC|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A Mutant E254k Length = 272 Back     alignment and structure
>pdb|3HOP|A Chain A, Structure Of The Actin-Binding Domain Of Human Filamin A Length = 272 Back     alignment and structure
>pdb|2WFN|A Chain A, Filamin A Actin Binding Domain Length = 278 Back     alignment and structure
>pdb|3FER|A Chain A, Crystal Structure Of N-Terminal Actin-Binding Domain From Human Filamin B (Tandem Ch-Domains). Northeast Structural Genomics Consortium Target Hr5571a. Length = 262 Back     alignment and structure
>pdb|2WA6|A Chain A, Structure Of The W148r Mutant Of Human Filamin B Actin Binding Domain At 1.95 Angstroms Resolution Length = 245 Back     alignment and structure
>pdb|3LUE|K Chain K, Model Of Alpha-Actinin Ch1 Bound To F-Actin Length = 109 Back     alignment and structure
>pdb|1BKR|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin At 1.1 Angstrom Resolution Length = 109 Back     alignment and structure
>pdb|1AA2|A Chain A, Calponin Homology (Ch) Domain From Human Beta-Spectrin Length = 108 Back     alignment and structure
>pdb|2YRN|A Chain A, Solution Structure Of The Ch Domain From Human Neuron Navigator 2 Length = 129 Back     alignment and structure
>pdb|1WYQ|A Chain A, Solution Structure Of The Second Ch Domain Of Human Spectrin Beta Chain, Brain 2 Length = 127 Back     alignment and structure
>pdb|1AOA|A Chain A, N-Terminal Actin-Crosslinking Domain From Human Fimbrin Length = 275 Back     alignment and structure
>pdb|2D87|A Chain A, Solution Structure Of The Ch Domain From Human Smoothelin Splice Isoform L2 Length = 128 Back     alignment and structure
>pdb|1BHD|A Chain A, Second Calponin Homology Domain From Utrophin Length = 118 Back     alignment and structure
>pdb|2D89|A Chain A, Solution Structure Of The Ch Domain From Human Eh Domain Binding Protein 1 Length = 119 Back     alignment and structure
>pdb|2JV9|A Chain A, The Solution Structure Of Calponin Homology Domain From Smoothelin-Like 1 Length = 119 Back     alignment and structure
>pdb|2D88|A Chain A, Solution Structure Of The Ch Domain From Human Mical-3 Protein Length = 121 Back     alignment and structure
>pdb|1PXY|A Chain A, Crystal Structure Of The Actin-Crosslinking Core Of Arabidopsis Fimbrin Length = 506 Back     alignment and structure
>pdb|2E9K|A Chain A, Solution Structure Of The Ch Domain From Human Mical-2 Length = 121 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query228
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 5e-71
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 2e-69
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 4e-69
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 3e-68
3hoc_A272 Filamin-A; calponin homology domain, actin binding 2e-64
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 4e-64
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 2e-63
1pxy_A 506 Fimbrin-like protein; calponin homology, F-actin-b 7e-63
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 6e-43
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 8e-56
1rt8_A 513 Fimbrin; filamentous actin binding domain (ABD), c 2e-55
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 7e-44
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 2e-50
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 1e-40
1wyl_A116 NEDD9 interacting protein with calponin homology a 6e-29
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 1e-28
2d88_A121 Protein mical-3; all alpha, calponin homology doma 2e-28
1bhd_A118 Utrophin; calponin homology, actin binding, struct 2e-28
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 2e-28
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 4e-28
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 8e-27
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-04
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Length = 245 Back     alignment and structure
 Score =  216 bits (550), Expect = 5e-71
 Identities = 95/222 (42%), Positives = 132/222 (59%), Gaps = 21/222 (9%)

Query: 1   EQERVQKKTFVNWINSYLSKRH---PPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVEKG 57
           E++RVQKKTF  W+N +L K         I DL EDL+DG  L++LLEVLS + LP EKG
Sbjct: 8   ERDRVQKKTFTKWVNKHLIKHWRAEAQRHISDLYEDLRDGHNLISLLEVLSGDSLPREKG 67

Query: 58  RNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTR 117
           R   R H L N   AL +L+ +++KLVNI + D+ DG P + LGLIWTIIL+FQI +   
Sbjct: 68  RM--RFHKLQNVQIALDYLRHRQVKLVNIRNDDIADGNPKLTLGLIWTIILHFQISDIQ- 124

Query: 118 ALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEH--IKVSDFGPSWRDGHAFLSVI 175
                          G+ +  +AK+ LL W    +  +  ++  +F  SWRDG  F ++I
Sbjct: 125 -------------VSGQSEDMTAKEKLLLWSQRMVEGYQGLRCDNFTTSWRDGRLFNAII 171

Query: 176 DNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
              +  L+D+  + +QTN   LD AF+VAE +LG+ RLLDPE
Sbjct: 172 HRHKPMLIDMNKVYRQTNLENLDQAFSVAERDLGVTRLLDPE 213
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Length = 296 Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Length = 246 Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Length = 254 Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A 2wfn_A Length = 272 Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Length = 275 Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Length = 245 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Length = 506 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Length = 863 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Length = 513 Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 129 Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Length = 131 Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Length = 116 Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Length = 128 Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Length = 121 Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Length = 118 Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Length = 109 Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Length = 127 Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 119 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
4b7l_A 347 Filamin-B; structural protein, FR 1 filamin hinge 100.0
3hoc_A272 Filamin-A; calponin homology domain, actin binding 100.0
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 100.0
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 100.0
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 100.0
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 100.0
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 100.0
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 100.0
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 100.0
1rt8_A 513 Fimbrin; filamentous actin binding domain (ABD), c 100.0
1pxy_A506 Fimbrin-like protein; calponin homology, F-actin-b 100.0
1rt8_A513 Fimbrin; filamentous actin binding domain (ABD), c 100.0
1pxy_A 506 Fimbrin-like protein; calponin homology, F-actin-b 100.0
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 99.98
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 99.97
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 99.95
1wyl_A116 NEDD9 interacting protein with calponin homology a 99.94
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 99.94
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 99.94
1bhd_A118 Utrophin; calponin homology, actin binding, struct 99.94
2d88_A121 Protein mical-3; all alpha, calponin homology doma 99.94
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 99.93
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 99.83
1wjo_A124 T-plastin; CH domain, actin binding, structural ge 99.7
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 99.47
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 99.39
2d89_A119 EHBP1 protein; all alpha, calponin homology domain 99.3
1wyl_A116 NEDD9 interacting protein with calponin homology a 99.26
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 99.24
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 99.24
1ujo_A144 Transgelin; CH domain, actin binding, structural g 99.23
2d88_A121 Protein mical-3; all alpha, calponin homology doma 99.2
2d87_A128 Smoothelin splice isoform L2; all alpha, calponin 99.2
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 99.19
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 99.18
2vzc_A131 Alpha-parvin; membrane, cytoplasm, cytoskeleton, c 99.17
1wyq_A127 Spectrin beta chain, brain 2; NPPSFA, structural g 99.15
1bkr_A109 Spectrin beta chain; filamentous actin-binding dom 99.15
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 99.14
1aoa_A275 T-fimbrin; actin-binding protein, calcium-binding, 99.12
2l3g_A126 RHO guanine nucleotide exchange factor 7; structur 99.1
1bhd_A118 Utrophin; calponin homology, actin binding, struct 99.07
3i6x_A193 P195, RAS GTPase-activating-like protein iqgap1; a 99.05
2rr8_A190 Iqgap1 protein; F-actin binding protein, protein b 99.03
1wku_A254 Alpha-actinin 3; calponin homology domain, actin b 98.98
1dxx_A246 Dystrophin; structural protein, muscular dystrophy 98.95
1sh5_A245 Plectin 1, PLTN, PCN; actin-binding domain, calpon 98.94
3f7p_A296 Plectin-1; plakin, hemidesmosome, cell adhesion, e 98.9
2wa7_A245 Filamin-B; disease mutation, skeletal dysplasia, s 98.83
2qjz_A123 Microtubule-associated protein RP/EB family member 98.82
2yrn_A129 Neuron navigator 2 isoform 4; calponin homolgy dom 98.82
3hoc_A272 Filamin-A; calponin homology domain, actin binding 98.77
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 98.77
4b7l_A347 Filamin-B; structural protein, FR 1 filamin hinge 98.67
1sjj_A 863 Actinin; 3-helix bundle, calponin homology domain, 98.44
2qjz_A123 Microtubule-associated protein RP/EB family member 98.28
1wyo_A159 Protein EB3, microtubule-associated protein RP/EB 98.24
1ujo_A144 Transgelin; CH domain, actin binding, structural g 98.08
1h67_A108 Calponin alpha; cytoskeleton, calponin homology do 98.01
1wyp_A136 Calponin 1; CH domain, F-actin binding, all-alpha, 98.0
1wyn_A146 Calponin-2; CH domain, F-actin binding, all alpha 97.92
1wym_A155 Transgelin-2; CH domain, F-actin binding, all heli 97.92
1p2x_A159 RNG2 protein, RAS GTPase-activating-like protein; 97.91
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 97.9
2ee7_A127 Sperm flagellar protein 1; all alpha protein, CH d 97.87
1p5s_A203 RAS GTPase-activating-like protein RNG2; alpha-hel 97.87
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 97.83
3i6x_A193 P195, RAS GTPase-activating-like protein iqgap1; a 97.81
2rr8_A190 Iqgap1 protein; F-actin binding protein, protein b 97.78
2r8u_A268 Microtubule-associated protein RP/EB family member 97.74
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 97.57
2ee7_A127 Sperm flagellar protein 1; all alpha protein, CH d 97.54
1wyr_A121 RHO guanine nucleotide exchange factor 6; CH domai 97.5
2l3g_A126 RHO guanine nucleotide exchange factor 7; structur 97.49
2r8u_A 268 Microtubule-associated protein RP/EB family member 97.44
4abo_I145 MAL3, microtubule integrity protein MAL3; structur 97.25
2qjx_A127 Protein BIM1; calponin homology domain, protein bi 96.85
3ky9_A 587 Proto-oncogene VAV; calponin homology domain, DBL 95.9
1wix_A164 HOOK homolog 1, RSGI RUH-026; structural genomics, 94.91
1wix_A164 HOOK homolog 1, RSGI RUH-026; structural genomics, 94.53
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
Probab=100.00  E-value=8.8e-57  Score=391.19  Aligned_cols=214  Identities=32%  Similarity=0.547  Sum_probs=189.7

Q ss_pred             ChHHHHHHHHHHHHHhhhccCCCCCCccchHHHhhhHHHHHHHHHHHcCCCCCCc-CCCCCCccchhhhHHHHHHHHHhC
Q psy7817           1 EQERVQKKTFVNWINSYLSKRHPPLRIDDLTEDLKDGTKLLALLEVLSNEKLPVE-KGRNLRRPHFLSNANTALQFLQSK   79 (228)
Q Consensus         1 ~~~~~q~~~~~~WiN~~L~~~~~~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~-~~~~~~~~~~i~N~~~~l~~~~~~   79 (228)
                      |||++|++|||+|||++|.+..  ..|+||++||+||++|++|+|.|++++++.. ..++.+++|+++|++.||+|+++.
T Consensus        13 ~we~iQ~ktFt~WiN~~L~~~~--~~V~dL~~Dl~DG~~L~~Lle~ls~~~l~~~~~~~p~~r~~k~eNv~~al~~~~~~   90 (347)
T 4b7l_A           13 PWKKIQQNTFTRWCNEHLKSVN--KRIGNLQTDLSDGLRLIALLEVLSQKRMYRKYHQRPTFRQMQLENVSVALEFLDRE   90 (347)
T ss_dssp             CHHHHHHHHHHHHHHHHHGGGT--CCCSCTTTTTTTSHHHHHHHHHHHTCCCSSCCCSSCCSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhCcCC--CCcCCHHHHhcCHHHHHHHHHHHcCCccChhhcCCcccHHHHHHHHHHHHHHHHHh
Confidence            6999999999999999998763  4699999999999999999999999998753 345667999999999999999999


Q ss_pred             CceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhhhHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHhhCCCCccee
Q psy7817          80 RIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEENTRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSNALPEHIKVS  159 (228)
Q Consensus        80 g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~~l~~~~~I~  159 (228)
                      |+++++|+++||++|++++||||+|+||+||+++...       ..++   ........++++.||+|||+++.. +.|+
T Consensus        91 g~~lv~i~~~DIvdGn~~liLgLiW~li~~~~i~~~~-------~~~~---~~~~~~~~~~k~~LL~W~~~~~~~-~~v~  159 (347)
T 4b7l_A           91 SIKLVSIDSKAIVDGNLKLILGLVWTLILHYSISMPV-------WEDE---GDDDAKKQTPKQRLLGWIQNKIPY-LPIT  159 (347)
T ss_dssp             TCCCSSCCHHHHHTTCHHHHHHHHHHHHHHHHTTSSC-------CC----------CCCCHHHHHHHHHHHHCTT-SCCC
T ss_pred             ccccCCCCcchhhcCCHhhHHHHHHHHHHHHhhhhhh-------cccc---cchhhhhhhHHHHHHHHHHhhCCC-cccC
Confidence            9999999999999999999999999999999997421       1111   122234568999999999999877 7999


Q ss_pred             cCCCCCcchhhHHHHHHHhcCCCC-CCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhcccCCCCC
Q psy7817         160 DFGPSWRDGHAFLSVIDNIQKDLV-DIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLFLHVK  227 (228)
Q Consensus       160 nf~~s~~DG~~l~~Li~~~~p~~~-~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~~~~~~  227 (228)
                      ||++||+||+|||+|||+|+|+.+ |++.+...+..+|+++||+.|+++||||++|+||||+...+|+|
T Consensus       160 nF~~sw~DG~af~aLi~~~~P~~~~d~~~l~~~~~~~n~~~Af~~Ae~~lGip~ll~peDi~~~~pDek  228 (347)
T 4b7l_A          160 NFNQNWQDGKALGALVDSCAPGLCPDWESWDPQKPVDNAREAMQQADDWLGVPQVITPEEIIHPDVDEH  228 (347)
T ss_dssp             CSSGGGTTSHHHHHHHHHHSTTSSTTGGGSCTTCHHHHHHHHHHHHHHHHCCCCSSCHHHHTCTTCCHH
T ss_pred             CCCCCccchHHHHHHHHHhCCccccchhhcCcCCHHHHHHHHHHHHHHhcCCCcccCHHHcCCCCCChh
Confidence            999999999999999999999998 89999999999999999999998899999999999999888865
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>1rt8_A Fimbrin; filamentous actin binding domain (ABD), calponin homology, actin-crosslinking, structural protein; 2.00A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1pxy_A Fimbrin-like protein; calponin homology, F-actin-binding domain (ABD), F-actin- crosslinking, structural genomics; 2.40A {Arabidopsis thaliana} SCOP: a.40.1.1 PDB: 3byh_B Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>1wjo_A T-plastin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: a.40.1.1 PDB: 2d85_A Back     alignment and structure
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>2d89_A EHBP1 protein; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wyl_A NEDD9 interacting protein with calponin homology and LIM domains; CH domain, mical, structural genomics; NMR {Homo sapiens} PDB: 2dk9_A Back     alignment and structure
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Back     alignment and structure
>2d88_A Protein mical-3; all alpha, calponin homology domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2e9k_A Back     alignment and structure
>2d87_A Smoothelin splice isoform L2; all alpha, calponin homology domain, actin binding, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2jv9_A 2k3s_A Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>2vzc_A Alpha-parvin; membrane, cytoplasm, cytoskeleton, cell junction, alternative splicing, calponin homology domain, actin-binding, cell membrane; 1.05A {Homo sapiens} PDB: 2vzd_A* 2vzg_B* 2vzi_B* 2k2r_A 3kmu_B 3kmw_B* 3rep_B* Back     alignment and structure
>1wyq_A Spectrin beta chain, brain 2; NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} Back     alignment and structure
>1bkr_A Spectrin beta chain; filamentous actin-binding domain, cytoskeleton; 1.10A {Homo sapiens} SCOP: a.40.1.1 PDB: 1aa2_A Back     alignment and structure
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1aoa_A T-fimbrin; actin-binding protein, calcium-binding, phosphorylation; 2.40A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 Back     alignment and structure
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Back     alignment and structure
>1bhd_A Utrophin; calponin homology, actin binding, structural protein; 2.00A {Homo sapiens} SCOP: a.40.1.1 Back     alignment and structure
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Back     alignment and structure
>1wku_A Alpha-actinin 3; calponin homology domain, actin binding domain, contractIle protein; 1.60A {Homo sapiens} PDB: 1tjt_A 2r0o_A 2eyi_A 2eyn_A 3lue_K Back     alignment and structure
>1dxx_A Dystrophin; structural protein, muscular dystrophy, calponin homology domain, actin-binding, utrophin; 2.6A {Homo sapiens} SCOP: a.40.1.1 a.40.1.1 PDB: 1qag_A Back     alignment and structure
>1sh5_A Plectin 1, PLTN, PCN; actin-binding domain, calponin-homology domain, structural protein; 2.00A {Mus musculus} SCOP: a.40.1.1 a.40.1.1 PDB: 1sh6_A 1mb8_A Back     alignment and structure
>3f7p_A Plectin-1; plakin, hemidesmosome, cell adhesion, epidermolysis bullosa, actin-binding, alternative splicing, coiled coil, cytoplasm; 2.75A {Homo sapiens} Back     alignment and structure
>2wa7_A Filamin-B; disease mutation, skeletal dysplasia, structural protein, actin-crosslinking, myogenesis, cytoskeleton; 1.85A {Homo sapiens} PDB: 2wa5_A 2wa6_A 3fer_A Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>2yrn_A Neuron navigator 2 isoform 4; calponin homolgy domain, helicase, all alpha, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>3hoc_A Filamin-A; calponin homology domain, actin binding domain, acetylation, actin-binding, alternative splicing, cytoplasm, cytoskeleton; 2.30A {Homo sapiens} PDB: 3hop_A 3hor_A Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>4b7l_A Filamin-B; structural protein, FR 1 filamin hinge ABD-1; 2.05A {Homo sapiens} PDB: 2wfn_A Back     alignment and structure
>1sjj_A Actinin; 3-helix bundle, calponin homology domain, calmodulin-like domain, actin binding protein, contractIle protein; 20.00A {Gallus gallus} SCOP: i.15.1.1 Back     alignment and structure
>2qjz_A Microtubule-associated protein RP/EB family member 1; calponin homology domain, microtubule plus END, +TIP, protein binding; 1.25A {Homo sapiens} SCOP: a.40.1.1 PDB: 1pa7_A 1ueg_A 3co1_A 1v5k_A Back     alignment and structure
>1wyo_A Protein EB3, microtubule-associated protein RP/EB family member 3; CH domain, microtubule-binding, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1ujo_A Transgelin; CH domain, actin binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Mus musculus} SCOP: a.40.1.1 Back     alignment and structure
>1h67_A Calponin alpha; cytoskeleton, calponin homology domain, actin binding,; NMR {Gallus gallus} SCOP: a.40.1.1 Back     alignment and structure
>1wyp_A Calponin 1; CH domain, F-actin binding, all-alpha, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wyn_A Calponin-2; CH domain, F-actin binding, all alpha helix, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>1wym_A Transgelin-2; CH domain, F-actin binding, all helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1p2x_A RNG2 protein, RAS GTPase-activating-like protein; helices, bundle, protein binding; 2.21A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1p5s_A RAS GTPase-activating-like protein RNG2; alpha-helical bundle, cytokine; 2.22A {Schizosaccharomyces pombe} SCOP: a.40.1.1 Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>3i6x_A P195, RAS GTPase-activating-like protein iqgap1; all helical, calmodulin-binding, cell membrane, membrane, phosphoprotein, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>2rr8_A Iqgap1 protein; F-actin binding protein, protein binding; NMR {Homo sapiens} Back     alignment and structure
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1wyr_A RHO guanine nucleotide exchange factor 6; CH domain, all-alpha, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} Back     alignment and structure
>2l3g_A RHO guanine nucleotide exchange factor 7; structural genomics, northeast structural genomics consortiu PSI-biology, calponin-homology domain; NMR {Homo sapiens} Back     alignment and structure
>2r8u_A Microtubule-associated protein RP/EB family member 1; cytoskeleton, acetylation, cell cycle, cell division, cytoplasm, mitosis, phosphorylation; 1.35A {Homo sapiens} SCOP: a.40.1.1 PDB: 1vka_A 1txq_B 1wu9_A 2hkq_A 2hl5_A 3tq7_A 3gjo_A 1yib_A 1yig_A Back     alignment and structure
>4abo_I MAL3, microtubule integrity protein MAL3; structural protein, cytoskeleton, GTPase, END binding; HET: GTP GSP; 8.60A {Schizosaccharomyces pombe} Back     alignment and structure
>2qjx_A Protein BIM1; calponin homology domain, protein binding; 1.90A {Saccharomyces cerevisiae} Back     alignment and structure
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A Back     alignment and structure
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1 Back     alignment and structure
>1wix_A HOOK homolog 1, RSGI RUH-026; structural genomics, mouse cDNA, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.40.3.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 228
d1pxya_ 500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 1e-64
d1pxya_500 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 2e-44
d1rt8a_ 505 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 1e-55
d1rt8a_505 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 2e-43
d1sh5a1120 a.40.1.1 (A:8-127) Actin binding domain of plectin 5e-39
d1dxxa1111 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens 3e-35
d1aoaa1131 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-cros 1e-29
d1bhda_108 a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxI 2e-21
d1wjoa_124 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 1e-20
d1wjoa_124 a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinkin 1e-08
d1sh5a2110 a.40.1.1 (A:128-237) Actin binding domain of plect 5e-20
d1aoaa2116 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros 2e-19
d1aoaa2116 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-cros 1e-08
d1bkra_108 a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) 9e-19
d1p2xa_159 a.40.1.1 (A:) Ras GTPase-activating-like protein r 1e-17
d1dxxa2127 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapie 2e-17
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure

class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  206 bits (525), Expect = 1e-64
 Identities = 52/226 (23%), Positives = 88/226 (38%), Gaps = 15/226 (6%)

Query: 6   QKKTFVNWINSYLSKRHP-------PLRIDDLTEDLKDGTKLLALLEVLSNEKLP---VE 55
           +K  FV  IN YL                + L E +KDG  L  L+ V     +    + 
Sbjct: 2   EKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAIN 61

Query: 56  KGRNLRRPHFLSNANTALQFLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEEN 115
             R L       N    L   ++    +VNI + DL +GRP +VLGLI  +I    + + 
Sbjct: 62  TKRVLNPWERNENHTLCLNSAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADL 121

Query: 116 TRALAALSAEGYTSPEPGKKDVE-SAKKTLLRWVSNALPE---HIKVSDFGPSWRDGHAF 171
                    E     +  ++ +    +K LL+W++  L +      VS+F    +D  A+
Sbjct: 122 NLKKTPQLVELLEDSDDVEELLRLPPEKVLLKWMNFHLKKGGYKKTVSNFSADLKDAQAY 181

Query: 172 LSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPE 217
             +++ +  +  D   L  +    R +   + AE  +   R L  E
Sbjct: 182 AFLLNVLAPEHCDPATLDAKDPLERAELVLSHAE-RMNCKRYLTAE 226
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 500 Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505 Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 505 Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 120 Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 111 Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 131 Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 124 Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Length = 110 Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Length = 116 Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Length = 108 Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 159 Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Length = 127 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query228
d1pxya_ 500 Fimbrin (Plastin), actin-crosslinking domain {Thal 100.0
d1rt8a_ 505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 100.0
d1pxya_500 Fimbrin (Plastin), actin-crosslinking domain {Thal 100.0
d1rt8a_505 Fimbrin (Plastin), actin-crosslinking domain {Fiss 100.0
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 99.97
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.97
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.96
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 99.94
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 99.94
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.93
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.86
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.84
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 99.82
d1aoaa2116 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.78
d1wjoa_124 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.73
d1bkra_108 beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} 99.25
d1dxxa1111 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.23
d1aoaa1131 Fimbrin (Plastin), actin-crosslinking domain {Huma 99.19
d1sh5a1120 Actin binding domain of plectin {Human (Homo sapie 99.18
d1dxxa2127 Dystrophin {Human (Homo sapiens) [TaxId: 9606]} 99.17
d1sh5a2110 Actin binding domain of plectin {Human (Homo sapie 99.13
d1bhda_108 Utrophin {Human (Homo sapiens) [TaxId: 9606]} 99.05
d1ujoa_144 Transgelin {Mouse (Mus musculus) [TaxId: 10090]} 99.04
d1h67a_108 Calponin {Chicken (Gallus gallus) [TaxId: 9031]} 99.02
d1p2xa_159 Ras GTPase-activating-like protein rng2 {Fission y 98.45
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 98.44
d2qjza1120 Microtubule-associated protein eb1, N-terminal mic 98.26
d1ujoa_144 Transgelin {Mouse (Mus musculus) [TaxId: 10090]} 98.22
d1h67a_108 Calponin {Chicken (Gallus gallus) [TaxId: 9031]} 97.97
d1wixa_164 Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId 94.08
d1wixa_164 Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId 92.92
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
class: All alpha proteins
fold: CH domain-like
superfamily: Calponin-homology domain, CH-domain
family: Calponin-homology domain, CH-domain
domain: Fimbrin (Plastin), actin-crosslinking domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.9e-49  Score=356.83  Aligned_cols=215  Identities=25%  Similarity=0.304  Sum_probs=180.1

Q ss_pred             HHHHHHHHHHHhhhccCCC-------CCCccchHHHhhhHHHHHHHHHHHcCCCCCCc---CCCCCCccchhhhHHHHHH
Q psy7817           5 VQKKTFVNWINSYLSKRHP-------PLRIDDLTEDLKDGTKLLALLEVLSNEKLPVE---KGRNLRRPHFLSNANTALQ   74 (228)
Q Consensus         5 ~q~~~~~~WiN~~L~~~~~-------~~~v~dl~~dl~DGv~L~~Lle~l~~~~~~~~---~~~~~~~~~~i~N~~~~l~   74 (228)
                      .|++|||+|||++|.++..       +..|+||++||+||++||+|+|.++|++++..   +.++.+++|+++|++.||+
T Consensus         1 ~qk~tft~WiN~~L~~~~~~~~~lpi~~~v~dL~~dl~DG~~L~~Lle~ls~~~l~~~~~~~~~~~~r~~~~eN~~~aL~   80 (500)
T d1pxya_           1 SEKGPFVQHINRYLGDDPFLKQFLPLDPHSNQLYELVKDGVLLCKLINVAVPGTIDERAINTKRVLNPWERNENHTLCLN   80 (500)
T ss_dssp             CTHHHHHHHHHHHHTTCTTTTTTCSCCTTSSHHHHHSTTSHHHHHHHHHHSTTSSCGGGSCCCSSCCHHHHHHHHHHHHH
T ss_pred             CcHhHHHHHHHHHhccCccccccCCCCCcHHHHHHHhhhHHHHHHHHHHHcCCccchhhhcCCCCccHHHHHHHHHHHHH
Confidence            3899999999999987521       34699999999999999999999999998743   3455678999999999999


Q ss_pred             HHHhCCceeeecCCCCccCCchhHHHHHHHHHHHHhhhhhh----hHHHHhhccCCCCCCCCCCcccccHHHHHHHHHHh
Q psy7817          75 FLQSKRIKLVNINSSDLVDGRPAVVLGLIWTIILYFQIEEN----TRALAALSAEGYTSPEPGKKDVESAKKTLLRWVSN  150 (228)
Q Consensus        75 ~~~~~g~~~~~i~~~di~~g~~~~iL~llw~li~~~~i~~~----~~~~~~l~~~~~~~~~~~~~~~~~~~~~Ll~Wv~~  150 (228)
                      |++..||++++|+++||++|++++||||+|+||++|++...    .+.+..+...++   ........+++++||+|||.
T Consensus        81 ~~k~~gi~lvnI~~~dIvdGn~~liLgLlW~ii~~~~i~~i~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~LL~W~n~  157 (500)
T d1pxya_          81 SAKAVGCSVVNIGTQDLAEGRPHLVLGLISQLIKIQLLADLNLKKTPQLVELLEDSD---DVEELLRLPPEKVLLKWMNF  157 (500)
T ss_dssp             HHHHTTCCCTTCCHHHHHHTCHHHHHHHHHHHHHHHHHSSSSSCC--------------------CCSCHHHHHHHHHHH
T ss_pred             HHHHcCCEEeccChhhhhcCCHHHHHHHHHHHHHHHHHhhhccccCcchhccccCCc---cchhhccCCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998742    223322222222   23445667899999999999


Q ss_pred             hCCC--C-cceecCCCCCcchhhHHHHHHHhcCCCCCCcccCcCCHHHHHHHHHHHHHhcCCCCCCCChhhhcccC
Q psy7817         151 ALPE--H-IKVSDFGPSWRDGHAFLSVIDNIQKDLVDIPALSKQTNRHRLDTAFNVAESNLGIARLLDPEVRQFLF  223 (228)
Q Consensus       151 ~l~~--~-~~I~nf~~s~~DG~~l~~Li~~~~p~~~~~~~~~~~~~~~n~~~a~~~A~~~lgip~ll~p~Di~~~~  223 (228)
                      +++.  + ++|+||++||+||++|++|+++|+|+.++++.++..+..+|++.||+.|+ ++|||++++|+||+..+
T Consensus       158 ~l~~~~~~~~v~nf~~d~~dG~~~~~Ll~~~~P~~~~~~~~~~~~~~~~~~~a~~~a~-~lgip~~l~peDI~~~~  232 (500)
T d1pxya_         158 HLKKGGYKKTVSNFSADLKDAQAYAFLLNVLAPEHCDPATLDAKDPLERAELVLSHAE-RMNCKRYLTAEEIVEGS  232 (500)
T ss_dssp             HHHHTTCCSCCCCSSTTTTTSHHHHHHHHHHCGGGCCGGGGGCCSHHHHHHHHHHHHH-HTTCCCCCCHHHHHTTC
T ss_pred             hccccCCCceeecCcCCchhHHHHHHHHHHHCCCccChhhcCcCCHHHHHHHHHHHHH-HhCCCccCCHHHhcCCc
Confidence            9843  2 78999999999999999999999999999999999999999999999887 79999999999999765
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1pxya_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1aoaa2 a.40.1.1 (A:260-375) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wjoa_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bkra_ a.40.1.1 (A:) beta-spectrin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa1 a.40.1.1 (A:9-119) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1aoaa1 a.40.1.1 (A:121-251) Fimbrin (Plastin), actin-crosslinking domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a1 a.40.1.1 (A:8-127) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dxxa2 a.40.1.1 (A:120-246) Dystrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1sh5a2 a.40.1.1 (A:128-237) Actin binding domain of plectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1bhda_ a.40.1.1 (A:) Utrophin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1p2xa_ a.40.1.1 (A:) Ras GTPase-activating-like protein rng2 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2qjza1 a.40.1.1 (A:13-132) Microtubule-associated protein eb1, N-terminal microtubule binding domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujoa_ a.40.1.1 (A:) Transgelin {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1h67a_ a.40.1.1 (A:) Calponin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure